From 11cd5bfe0129a777289d2768d13ce5043e2404ca Mon Sep 17 00:00:00 2001 From: shyu2kko Date: Wed, 20 Mar 2024 11:55:27 -0400 Subject: [PATCH 01/11] remove high-pass filter for multi-echo processing; no upper limit for filter --- functions/.02_proc-func.sh.swp | Bin 0 -> 16384 bytes 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 functions/.02_proc-func.sh.swp diff --git a/functions/.02_proc-func.sh.swp b/functions/.02_proc-func.sh.swp new file mode 100644 index 0000000000000000000000000000000000000000..3f8d3469dd71ffcda9679eacd3ccdd5d1cb8b3d9 GIT binary patch literal 16384 zcmeHNU5p!76}}K4=}(|)c}6E=N7;zjUhk%9vcW{|{v?Tbt#0vsmctTKq9uQUECSn4L0~rGu z0~rGu0~rGu0~rGu0~rJV?+k?AVewfE;=Rd0+~ogzX8!*xxt>VMy&3sG6L~!;|H+K} zokafWr2J6QK-$hf68X7A-kp)ZoygY``FCdIZzb|pB7c2G{`W-w@kCxp2AsD4w?zKY zM1EsN{^m^k&&|l+n34ZwM*i1Co{n$fK-^H;{_RA5C~5!dj65mM{$&hg3}g&s3}g&s z3}g&s3}g&s3}g&s3}g(vD+Xj&h=)=0Py8Z^-~ZG1|JxrD;uYYlfCH=m2Y?@aP>3%9 zM}RjD3vnBG8TcjeE#Mn~4VgS z9?%6^z~jJ4;3)86-~jOE146tG+yY((UILy2z79MCTmTkc`eGI09?LVO#z0;~Y% zfH~kn;6C6Ga1eOw{TM&+IbaSr2E6hK0cZn{06dRr?&D5}uzK{=Q)J|a(sG)nbef@WP^CgEt83Nm^%h;ee3rt2azu_y z87L|*QD8ZJTahvcE=luhWCa#~kU@J^I3U+i#I`7aF$!JcPc&2zkf(eKa05+|EBsfl z9EMbPLq$e2@_W)$G`^M$jO~W6OxGD1iPDPidemx+btqQqqPW!c}uPRd;Evc4=ZMR&rbvrYc*?@45bv&Nq`5b!%XQOHnwhSKm($g{fXc?J6G= zu{Gf7z@_c+H!yAAQ>j)g)pHQ{ZlX0&+8EDMG6JnM?Fnb8XNmvRMJS$w{jG)rD_{xx zm~obr9jIhFYRgr$a*aYCVz^d3Aafv{zN(pW&AQe~B^eQGuY0ch9oNvZ zSY(Kr({stFIbIY7ONPkhaxit8Z<$noGpAoghzBsT|YAZ1+!45c-iBMm{E< zz4rv%m>ZN%m(bY)&v?(WRe*h{+zwQ~Z7N@Nlx;`D3cRgr`R!d752I54#^be>ri90g z+JOhpEa2AKRWRFbmG{~*v}I73R4+P~RqQ`)q=tj2W4eB*uDvU}No{;yWsePyJI5BG zz~5T6Q8+4j(l^1;R2h~Prk{xG@EEuX6Vi?e!crkh$Hy|O%TFlQvrE(}2Uw43*V!;X zk4i(|Dz(bRArCaRp2{Y=tT*l;$WuW9kMZi$4Y$e@Du*)INvmqI?@D}!U8>FX#>{Yk zCnmMRyRf;xxqC7+WrCT<))lH#XYMq?M3xeXA!g>tjlya2N_Uc1Vuog?E}8ZHh)zha zjOo|*N~7_o%C#3wz(Xr!VR-5^nc2>AV;-Bp)RbJ#p zHf~Uku+i~0r587KT@^UTLQ>bPAjH{b+vK<*`4Jz5O%>wH#=h<^pEoPxk@b9cNHY!K zoW>gDuNT|qK$$!3uJV-A#fAeWW_0y=#nb-DWuC*d%R{#t*{U$39QPdkS!S~|Hf!Oy zYKAh5f+gD8Y_{6XR%3g)wcV($3(>KyFmh4~;1JS%_xml~rf8jj*uesX9Wls$3~`WhmR}=c8r*BDC+zVKDw+w6Hs0T)>B{IX=c< zXREQfj0lH}tMK^(+cD@e-MqPvP~t#YE{wM*Lk7WUUT6z7d=Tp3ZQj)IC>si6YBuLamV6!kV5wKRU$l{mof$Y6k8(9wIn z=u@@x+tgZZwrchBbaA!OtZmlsW(Ey$*cEwL=BkUKdLH+rbDf?5+aPOh17XX67UmZg zk0;8q+l^mHK!>CbLOi^d^r$C!zwOzwAL#o0E@DcW+r*L7QGTKB?y4bf*w%b%%R*4- zW0mRU%&#-NlNWd^XB!O}*)&&;`cV)Tn##k>%^HxjH*oQ`WaI46XG2r^Xf&>arpjm1 zrX+#->(sICP+U`;SgTmX6w#Bu6^6>;#+MQQU#Bg3HF9mKS!yT?r;1M(-GEjUJt-A> zhvBh-)5p2`o%8EWyM)LcDRnHT#Pcio{eJ`R@?Qk_{U5Kk`nrX8{TG2B1J3{+@Br}L zME47 zirY4a$PJ`9R!(!o*-xD|h91(WNFL)qGD1oA8jm_Vtdm&z8=>qY*%2$nxz;4*JW1V7 z%-*v_oshqye@H&4E)wHN4F$W#q!A>FJX?i2e}UXLr*Nk_%E?ds$Y%90RQ;1H(i+n> z@PoE*Av>slnvIj=Mjk~*>C`-O=Sb<<$Qn*mjJ%CswjwG}UfQk|O3tu%%;VzU6qL^L literal 0 HcmV?d00001 From b9f844a53e3d81f9615cc51e41130f49c144a8f0 Mon Sep 17 00:00:00 2001 From: shyu2kko Date: Wed, 20 Mar 2024 23:13:58 -0400 Subject: [PATCH 02/11] removed high pass filtering for multi echo --- functions/02_proc-func.sh | 23 ++++++++++++++--------- 1 file changed, 14 insertions(+), 9 deletions(-) diff --git a/functions/02_proc-func.sh b/functions/02_proc-func.sh index d166e6b0..aab470fd 100755 --- a/functions/02_proc-func.sh +++ b/functions/02_proc-func.sh @@ -6,7 +6,8 @@ # and incorporation to mica-pipe by Raul (August-September 2020) # and addition of a bunch of fancy flags by Jessica (October-November 2020) # and updated mapping by Jordan (March 2023) -# +# + # Resting state fMRI processing with bash: # # Preprocessing workflow for func. @@ -83,6 +84,7 @@ else dir_anat="${proc_struct}" fi subject_dir + dir_volum="${subject_dir}/parc" T1_seg_subcortex="${dir_volum}/${BIDSanat}_space-nativepro_T1w_atlas-subcortical.nii.gz" T1_seg_cerebellum="${dir_volum}/${BIDSanat}_space-nativepro_T1w_atlas-cerebellum.nii.gz" @@ -466,7 +468,7 @@ if [[ ! -f "${func_volum}/${idBIDS}${func_lab}_preproc".nii.gz ]]; then Do_cmd antsApplyTransforms -d 3 -i "$T1nativepro_mask" -r "$tmp_func_mean" -t "$tmp_aff_mat" -o "${tmp_func_mask}" -u int # Run tedana - tedana -d $(printf "%s " "${scans4tedana[@]}") -e $(printf "%s " "${EchoTime[@]}") --out-dir "${tedana_dir}" --mask "${tmp_func_mask}" + tedana -d $(printf "%s " "${scans4tedana[@]}") -e $(printf "%s " "${EchoTime[@]}") --out-dir "${tedana_dir}" --mask "${tmp_func_mask}" # Overwite the motion corrected to insert this into topup. ## TODO: func_topup should take proper input arguments instead of relying on architecture implemented in other functions. @@ -507,13 +509,16 @@ else Info "Subject ${id} has a brain masked from func"; ((Nsteps++)); ((N++)) fi -# High-pass filter - Remove all frequencies EXCEPT those in the range -if [[ ! -f "${func_volum}/${idBIDS}${func_lab}_tSNR.nii.gz" ]]; then ((N++)) - Info "High pass filter" - Do_cmd 3dTproject -input "${func_nii}" -prefix "$fmri_HP" -passband 0.01 666 - if [[ -f "${fmri_HP}" ]] ; then ((Nsteps++)); fi -else - Info "Subject ${id} has High-pass filter"; ((Nsteps++)); ((N++)) +# High-pass filter - Remove all frequencies in the range (only for single echo processing) +# retaining frequencies above 0.01Hz +if [[ ${acq} == "se" ]]; then + if [[ ! -f "${func_volum}/${idBIDS}${func_lab}_tSNR.nii.gz" ]]; then ((N++)) + Info "High pass filter" + Do_cmd 3dTproject -input "${func_nii}" -prefix "$fmri_HP" -stopband 0 0.0099 + if [[ -f "${fmri_HP}" ]] ; then ((Nsteps++)); fi + else + Info "Subject ${id} has Highpass filter"; ((Nsteps++)); ((N++)) + fi fi #------------------------------------------------------------------------------# From 49b8944a1efda25ca3ba444027ffed986b216c70 Mon Sep 17 00:00:00 2001 From: shyu2kko Date: Thu, 21 Mar 2024 11:11:00 -0400 Subject: [PATCH 03/11] tight mask for tedana based on first echo - highest contrast for skull-stripping --- 7tqc_functest.sh | 37 + 7tqc_tedana.sh | 38 + functions/.02_proc-func.sh.swp | Bin 16384 -> 0 bytes functions/02_proc-func.sh | 22 +- functions/init.sh | 14 +- micapipe | 16 + nohup.out | 94640 +++++++++++++++++++++++++++++++ submit_reprocess.sh | 24 + 8 files changed, 94773 insertions(+), 18 deletions(-) create mode 100755 7tqc_functest.sh create mode 100755 7tqc_tedana.sh delete mode 100644 functions/.02_proc-func.sh.swp create mode 100644 nohup.out create mode 100755 submit_reprocess.sh diff --git a/7tqc_functest.sh b/7tqc_functest.sh new file mode 100755 index 00000000..de0a1043 --- /dev/null +++ b/7tqc_functest.sh @@ -0,0 +1,37 @@ +#!/bin/bash + +# test micapipe functional processing +# with changed micapipe script as to save tedana outputs elsewhere +# MAKE SURE PROC SURF WAS RUN BEFORE +# MAKE SURE TO MAKE YOURSELF A MICAPIPE DEV - + +source ~/.bashrc +micapipe_dev # this function exists in ~/.bashrc + +testpath=/mica/mica1/03_projects/yigu/7t_funcQC/release # a micapipe directory will be created here which is great +tmpDir="${testpath}"/tmp_remask +bidsDir=/data/mica3/BIDS_PNI/data_release/rawdata +#bidsDir="${testpath}"/data/rawdata + + +#------set the subject and session MANUALLY-----# +subjid="PNC002" +sesid="02" + +#-------------call proc func----------# +MICAPIPE=/mica/mica1/03_projects/yigu/software/micapipe + +cd $MICAPIPE + +./micapipe -sub $subjid \ + -ses $sesid \ + -out $testpath \ + -bids $bidsDir \ + -tmpDir $tmpDir \ + -proc_func \ + -mainScanStr "task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold" \ + -nocleanup \ + -mica # this is required as environment. + +echo "---------------> DONE PROC-FUNC FOR RUN" +echo " sub-${subjid}_ses-${sesid}" diff --git a/7tqc_tedana.sh b/7tqc_tedana.sh new file mode 100755 index 00000000..babc4ecd --- /dev/null +++ b/7tqc_tedana.sh @@ -0,0 +1,38 @@ +#!/bin/bash + +# this script resubmits proc_func temp files through tedana +# for testing + +source /home/bic/yiguz/.bashrc +micapipe_dev +source $MICAPIPE/functions/init.sh + +#-------figure out echo time------# +mainScanStr="task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold" +subject_bids="/mica/mica1/03_projects/yigu/7t_funcQC/data/rawdata/sub-PNC003/ses-01" +idBIDS="sub-PNC003_ses-01" +tmp="/mica/mica1/03_projects/yigu/7t_funcQC/tmp/3431_micapipe_proc-func_sub-PNC003_ses-01" + +IFS=',' read -ra func_json <<< $mainScanStr +for i in "${!func_json[@]}"; do + func_json[i]=$(ls "${subject_bids}/func/${idBIDS}_${func_json[$i]}".json 2>/dev/null) +done # Full path +mainScanJson=(${func_json[*]}) + + +unset EchoTime +for json in ${mainScanJson[*]}; do + EchoTime+=($(grep EchoTime "${json}" | awk -F ' ' '{print $2}' | awk -F ',' '{print $1}')) +done + +# retrieve scans for tedana +tedana_dir="${tmp}"/tedana +tmp_func_mask="${tmp}/mainScan01_mean_mask.nii.gz" +scans4tedana=("${tmp}"/mainScan_mc.nii.gz $(ls "${tmp}"/mainScan?_mc.nii.gz)) +echo "Files : ${scans4tedana[*]/${tmp}/}" +echo "EchoNumber : ${EchoNumber[*]}" +#echo "EchoTime :" "${EchoTime[*]}" + +mkdir -p "${tedana_dir}" + +tedana -d $(printf "%s " "${scans4tedana[@]}") -e $(printf "%s " "${EchoTime[@]}") --out-dir "${tedana_dir}" --mask "${tmp_func_mask}" diff --git a/functions/.02_proc-func.sh.swp b/functions/.02_proc-func.sh.swp deleted file mode 100644 index 3f8d3469dd71ffcda9679eacd3ccdd5d1cb8b3d9..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 16384 zcmeHNU5p!76}}K4=}(|)c}6E=N7;zjUhk%9vcW{|{v?Tbt#0vsmctTKq9uQUECSn4L0~rGu z0~rGu0~rGu0~rGu0~rJV?+k?AVewfE;=Rd0+~ogzX8!*xxt>VMy&3sG6L~!;|H+K} zokafWr2J6QK-$hf68X7A-kp)ZoygY``FCdIZzb|pB7c2G{`W-w@kCxp2AsD4w?zKY zM1EsN{^m^k&&|l+n34ZwM*i1Co{n$fK-^H;{_RA5C~5!dj65mM{$&hg3}g&s3}g&s z3}g&s3}g&s3}g&s3}g(vD+Xj&h=)=0Py8Z^-~ZG1|JxrD;uYYlfCH=m2Y?@aP>3%9 zM}RjD3vnBG8TcjeE#Mn~4VgS z9?%6^z~jJ4;3)86-~jOE146tG+yY((UILy2z79MCTmTkc`eGI09?LVO#z0;~Y% zfH~kn;6C6Ga1eOw{TM&+IbaSr2E6hK0cZn{06dRr?&D5}uzK{=Q)J|a(sG)nbef@WP^CgEt83Nm^%h;ee3rt2azu_y z87L|*QD8ZJTahvcE=luhWCa#~kU@J^I3U+i#I`7aF$!JcPc&2zkf(eKa05+|EBsfl z9EMbPLq$e2@_W)$G`^M$jO~W6OxGD1iPDPidemx+btqQqqPW!c}uPRd;Evc4=ZMR&rbvrYc*?@45bv&Nq`5b!%XQOHnwhSKm($g{fXc?J6G= zu{Gf7z@_c+H!yAAQ>j)g)pHQ{ZlX0&+8EDMG6JnM?Fnb8XNmvRMJS$w{jG)rD_{xx zm~obr9jIhFYRgr$a*aYCVz^d3Aafv{zN(pW&AQe~B^eQGuY0ch9oNvZ zSY(Kr({stFIbIY7ONPkhaxit8Z<$noGpAoghzBsT|YAZ1+!45c-iBMm{E< zz4rv%m>ZN%m(bY)&v?(WRe*h{+zwQ~Z7N@Nlx;`D3cRgr`R!d752I54#^be>ri90g z+JOhpEa2AKRWRFbmG{~*v}I73R4+P~RqQ`)q=tj2W4eB*uDvU}No{;yWsePyJI5BG zz~5T6Q8+4j(l^1;R2h~Prk{xG@EEuX6Vi?e!crkh$Hy|O%TFlQvrE(}2Uw43*V!;X zk4i(|Dz(bRArCaRp2{Y=tT*l;$WuW9kMZi$4Y$e@Du*)INvmqI?@D}!U8>FX#>{Yk zCnmMRyRf;xxqC7+WrCT<))lH#XYMq?M3xeXA!g>tjlya2N_Uc1Vuog?E}8ZHh)zha zjOo|*N~7_o%C#3wz(Xr!VR-5^nc2>AV;-Bp)RbJ#p zHf~Uku+i~0r587KT@^UTLQ>bPAjH{b+vK<*`4Jz5O%>wH#=h<^pEoPxk@b9cNHY!K zoW>gDuNT|qK$$!3uJV-A#fAeWW_0y=#nb-DWuC*d%R{#t*{U$39QPdkS!S~|Hf!Oy zYKAh5f+gD8Y_{6XR%3g)wcV($3(>KyFmh4~;1JS%_xml~rf8jj*uesX9Wls$3~`WhmR}=c8r*BDC+zVKDw+w6Hs0T)>B{IX=c< zXREQfj0lH}tMK^(+cD@e-MqPvP~t#YE{wM*Lk7WUUT6z7d=Tp3ZQj)IC>si6YBuLamV6!kV5wKRU$l{mof$Y6k8(9wIn z=u@@x+tgZZwrchBbaA!OtZmlsW(Ey$*cEwL=BkUKdLH+rbDf?5+aPOh17XX67UmZg zk0;8q+l^mHK!>CbLOi^d^r$C!zwOzwAL#o0E@DcW+r*L7QGTKB?y4bf*w%b%%R*4- zW0mRU%&#-NlNWd^XB!O}*)&&;`cV)Tn##k>%^HxjH*oQ`WaI46XG2r^Xf&>arpjm1 zrX+#->(sICP+U`;SgTmX6w#Bu6^6>;#+MQQU#Bg3HF9mKS!yT?r;1M(-GEjUJt-A> zhvBh-)5p2`o%8EWyM)LcDRnHT#Pcio{eJ`R@?Qk_{U5Kk`nrX8{TG2B1J3{+@Br}L zME47 zirY4a$PJ`9R!(!o*-xD|h91(WNFL)qGD1oA8jm_Vtdm&z8=>qY*%2$nxz;4*JW1V7 z%-*v_oshqye@H&4E)wHN4F$W#q!A>FJX?i2e}UXLr*Nk_%E?ds$Y%90RQ;1H(i+n> z@PoE*Av>slnvIj=Mjk~*>C`-O=Sb<<$Qn*mjJ%CswjwG}UfQk|O3tu%%;VzU6qL^L diff --git a/functions/02_proc-func.sh b/functions/02_proc-func.sh index aab470fd..222caccd 100755 --- a/functions/02_proc-func.sh +++ b/functions/02_proc-func.sh @@ -49,10 +49,10 @@ here=$(pwd) #------------------------------------------------------------------------------# # qsub configuration -if [ "$PROC" = "qsub-MICA" ] || [ "$PROC" = "qsub-all.q" ] || [ "$PROC" = "LOCAL-MICA" ]; then - MICAPIPE=/data_/mica1/01_programs/micapipe-v0.2.0 - source "${MICAPIPE}/functions/init.sh" "$threads" -fi +#if [ "$PROC" = "qsub-MICA" ] || [ "$PROC" = "qsub-all.q" ] || [ "$PROC" = "LOCAL-MICA" ]; then +# MICAPIPE=/data_/mica1/01_programs/micapipe-v0.2.0 +# source "${MICAPIPE}/functions/init.sh" "$threads" +#fi # source utilities source "$MICAPIPE"/functions/utilities.sh @@ -83,7 +83,7 @@ else BIDSanat="${idBIDS}" dir_anat="${proc_struct}" fi -subject_dir + dir_volum="${subject_dir}/parc" T1_seg_subcortex="${dir_volum}/${BIDSanat}_space-nativepro_T1w_atlas-subcortical.nii.gz" @@ -456,16 +456,12 @@ if [[ ! -f "${func_volum}/${idBIDS}${func_lab}_preproc".nii.gz ]]; then tmp_t1w_brain_res="${tmp}/nativepro_brain_rescaled.nii.gz" tmp_affineStr="${tmp}/from-nativepro_to-mainScan01_" tmp_aff_mat="${tmp_affineStr}0GenericAffine.mat" + tmp_func_strip="${tmp}/mainScan01_mean_stripped.nii.gz" tmp_func_mask="${tmp}/mainScan01_mean_mask.nii.gz" - # Create a loose mask for tedana + # Create a tight mask for tedana fslmaths "${scans4tedana[0]}" -Tmean "${tmp_func_mean}" - voxels=$(mrinfo "${tmp_func_mean}" -spacing); voxels="${voxels// /,}" - Do_cmd flirt -applyisoxfm "${voxels}" -in "${T1nativepro_brain}" -ref "${T1nativepro_brain}" -out "${tmp_t1w_brain_res}" - # [fixedImage,movingImage,initializationFeature] - centeralign="[${tmp_func_mean},${tmp_t1w_brain_res},0]" - Do_cmd antsRegistrationSyNQuick.sh -d 3 -m "$tmp_t1w_brain_res" -f "$tmp_func_mean" -o "$tmp_affineStr" -t a -n "$threads" -p d -i ${centeralign} - Do_cmd antsApplyTransforms -d 3 -i "$T1nativepro_mask" -r "$tmp_func_mean" -t "$tmp_aff_mat" -o "${tmp_func_mask}" -u int + Do_cmd mri_synthstrip -i "${tmp_func_mean}" -o "${tmp_func_strip}" -m "${tmp_func_mask}" # Run tedana tedana -d $(printf "%s " "${scans4tedana[@]}") -e $(printf "%s " "${EchoTime[@]}") --out-dir "${tedana_dir}" --mask "${tmp_func_mask}" @@ -519,6 +515,8 @@ if [[ ${acq} == "se" ]]; then else Info "Subject ${id} has Highpass filter"; ((Nsteps++)); ((N++)) fi +else + fmri_HP=${func_nii} # no need to filter post tedana fi #------------------------------------------------------------------------------# diff --git a/functions/init.sh b/functions/init.sh index 6b50f894..eac707c7 100755 --- a/functions/init.sh +++ b/functions/init.sh @@ -103,12 +103,14 @@ export OMP_NUM_THREADS="$threads" # Where processing will run if [[ -z "$PROC" ]]; then export PROC="LOCAL-MICA"; fi +# YIGU MODIFICATION--------- # Set tmpDir depending on the node -host=$(echo "$HOSTNAME" | awk -F '.' '{print $1}') -case $host in - fladgate*|yeatman*|oncilla*) export tmpDir="/host/$host/local_raid/temporaryLocalProcessing" ;; - cassio*|varro*) export tmpDir="/host/$host/export02/data/temporaryLocalProcessing" ;; - *) export tmpDir="/data/mica2/temporaryNetworkProcessing" ;; -esac +#host=$(echo "$HOSTNAME" | awk -F '.' '{print $1}') +#case $host in +# fladgate*|yeatman*|oncilla*) export tmpDir="/host/$host/local_raid/temporaryLocalProcessing" ;; +# cassio*|varro*) export tmpDir="/host/$host/export02/data/temporaryLocalProcessing" ;; +# *) export tmpDir="/data/mica2/temporaryNetworkProcessing" ;; +#esac +#------------- export SGE_ROOT=/opt/sge diff --git a/micapipe b/micapipe index 9d011207..dd2ae160 100755 --- a/micapipe +++ b/micapipe @@ -522,6 +522,7 @@ do esac done + # Argument check out & WARNINGS if [ "$QCgroup" = "TRUE" ]; then if [ -z ${out} ]; then @@ -535,6 +536,7 @@ if [ "$QCgroup" = "TRUE" ]; then fi fi + # argument check out & WARNINGS missing_arg @@ -557,6 +559,7 @@ Error "A processing flag is missing: -cleanup" exit 1; fi + # -----------------------------------------------------------------------------------------------# # Call micapipe_cleanup within micapipe echo -e "\n\nmicapipe ${argCP}" @@ -608,6 +611,7 @@ else for i in "${!dwis_main[@]}"; do dwis_main[i]=$(realpath ${dwis_main[$i]}); done # Full path dwi_main=$(IFS=','; echo "${dwis_main[*]}") fi + # User provided DWI reverse phase encoded if [ -z ${dwi_rpe} ]; then dwi_rpe=DEFAULT @@ -769,6 +773,7 @@ if [ "$procVOL" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # # # Surface processing: Freesurfer | FastSurfer if [ "$procSurf" = "TRUE" ]; then @@ -794,6 +799,7 @@ if [ "$procSurf" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # POST Structural processing mica-02 # -----------------------------------------------------------------------------------------------# @@ -824,6 +830,7 @@ if [ "$postVOL" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # # # Diffusion processing # -----------------------------------------------------------------------------------------------# @@ -854,6 +861,7 @@ if [ "$procDWI" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # # # Arterial spin labelling processing # -----------------------------------------------------------------------------------------------# @@ -882,6 +890,7 @@ if [ "$procASL" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # # # T2/FLAIR processing # -----------------------------------------------------------------------------------------------# @@ -910,6 +919,7 @@ if [ "$procFLAIR" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # POST Microstructural profile covariance mica-03 # -----------------------------------------------------------------------------------------------# @@ -945,6 +955,7 @@ if [ "$postMPC" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # POST Geodesic distance mica-03 # -----------------------------------------------------------------------------------------------# @@ -975,6 +986,7 @@ if [ "$postGD" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # Superficial White Matter # -----------------------------------------------------------------------------------------------# @@ -987,6 +999,7 @@ if [ "$SWM" = "TRUE" ]; then $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt fi + # -----------------------------------------------------------------------------------------------# # Microstructural Profile Covariance - Superficial White Matter # -----------------------------------------------------------------------------------------------# @@ -1001,6 +1014,7 @@ if [ "$MPC_SWM" = "TRUE" ]; then "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" fi + # -----------------------------------------------------------------------------------------------# # SC: Structural Connectome processing (tractography) # -----------------------------------------------------------------------------------------------# @@ -1031,6 +1045,7 @@ if [ "$postDWI" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # # # functional MRI # -----------------------------------------------------------------------------------------------# @@ -1064,6 +1079,7 @@ if [ "$procFunc" = "TRUE" ]; then fi fi + # -----------------------------------------------------------------------------------------------# # # # Individual QC # -----------------------------------------------------------------------------------------------# diff --git a/nohup.out b/nohup.out new file mode 100644 index 00000000..ae016aae --- /dev/null +++ b/nohup.out @@ -0,0 +1,94640 @@ +========================reprocessing without filter=================== +sub-PNC001_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC001 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC001 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC001 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC001 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 22:57:24 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 22:57:24 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz is 37.500004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 22:59:28 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:01:34 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:01:48 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.34 (mm) at sub-brick 177 +++ Max delta displ in automask = 0.23 (mm) at sub-brick 206 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:15:02 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:15:20 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz is 37.500004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:17:28 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:19:37 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz is 37.500004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:21:49 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.683 -2.097 1.790 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.5 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.727 -3.371 3.159 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 73.1 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:26:37 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.899999737739563 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:27:05 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x556f002b96f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [107.102, 60.5536, -118.798] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556f00130730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x556f002d0320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x556f002bcfa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.8093, 121.5, -129.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556f002c2e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x556f00acd230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x556f00acb5c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [107.102, 60.5536, -118.798] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556f002bf3f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x556f015f7450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x556f00ac9da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.8093, 121.5, -129.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556f002c6360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x556f01df1780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.684097482949e-01, 1.797693134862e+308, 2.1739e-01, 2.1739e-01, + 2DIAGNOSTIC, 2, -7.722058692756e-01, 1.797693134862e+308, 2.1879e-01, 1.4009e-03, + 2DIAGNOSTIC, 3, -7.739926935655e-01, 1.797693134862e+308, 2.2022e-01, 1.4319e-03, + 2DIAGNOSTIC, 4, -7.757289564199e-01, 1.797693134862e+308, 2.2166e-01, 1.4360e-03, + 2DIAGNOSTIC, 5, -7.785032033207e-01, 1.797693134862e+308, 2.2309e-01, 1.4281e-03, + 2DIAGNOSTIC, 6, -7.849556631314e-01, 1.797693134862e+308, 2.2476e-01, 1.6661e-03, + 2DIAGNOSTIC, 7, -7.853440315376e-01, 1.797693134862e+308, 2.2633e-01, 1.5740e-03, + 2DIAGNOSTIC, 8, -7.863460767953e-01, 1.797693134862e+308, 2.2781e-01, 1.4830e-03, + 2DIAGNOSTIC, 9, -7.876342019866e-01, 1.797693134862e+308, 2.2928e-01, 1.4679e-03, + 2DIAGNOSTIC, 10, -7.867991199121e-01, 1.682817417802e-03, 2.3237e-01, 3.0921e-03, + 2DIAGNOSTIC, 11, -7.868787017038e-01, 1.258824581556e-03, 2.3391e-01, 1.5399e-03, + 2DIAGNOSTIC, 12, -7.872858629780e-01, 9.205518407312e-04, 2.3538e-01, 1.4639e-03, + 2DIAGNOSTIC, 13, -7.885327816167e-01, 6.378010561042e-04, 2.3687e-01, 1.4892e-03, + 2DIAGNOSTIC, 14, -7.900693312336e-01, 4.217495729682e-04, 2.3902e-01, 2.1560e-03, + 2DIAGNOSTIC, 15, -7.909384914716e-01, 2.803683992397e-04, 2.4048e-01, 1.4620e-03, + 2DIAGNOSTIC, 16, -7.917736996217e-01, 2.973735960695e-04, 2.4200e-01, 1.5140e-03, + 2DIAGNOSTIC, 17, -7.976603959519e-01, 4.182357544596e-04, 2.4346e-01, 1.4582e-03, + 2DIAGNOSTIC, 18, -8.149035737765e-01, 8.485538928156e-04, 2.4493e-01, 1.4770e-03, + 2DIAGNOSTIC, 19, -8.328186184858e-01, 1.508812528669e-03, 2.4663e-01, 1.6999e-03, + 2DIAGNOSTIC, 20, -8.101239353774e-01, 1.535444473459e-03, 2.5017e-01, 3.5400e-03, + 2DIAGNOSTIC, 21, -8.105719201337e-01, 1.445187510473e-03, 2.5166e-01, 1.4861e-03, + 2DIAGNOSTIC, 22, -8.121019567559e-01, 1.257520845851e-03, 2.5313e-01, 1.4760e-03, + 2DIAGNOSTIC, 23, -8.127011787512e-01, 9.853391625870e-04, 2.5458e-01, 1.4479e-03, + 2DIAGNOSTIC, 24, -8.131331048785e-01, 6.707681495836e-04, 2.5604e-01, 1.4620e-03, + 2DIAGNOSTIC, 25, -8.134156306702e-01, 3.451253030953e-04, 2.5751e-01, 1.4701e-03, + 2DIAGNOSTIC, 26, -8.146369147539e-01, 4.672914689343e-05, 2.5897e-01, 1.4510e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.324281030697e-01, 1.797693134862e+308, 3.0521e-01, 4.6249e-02, + 2DIAGNOSTIC, 2, -4.319020309533e-01, 1.797693134862e+308, 3.0772e-01, 2.5091e-03, + 2DIAGNOSTIC, 3, -4.329840687971e-01, 1.797693134862e+308, 3.1041e-01, 2.6839e-03, + 2DIAGNOSTIC, 4, -4.346966428035e-01, 1.797693134862e+308, 3.1294e-01, 2.5330e-03, + 2DIAGNOSTIC, 5, -4.361237075399e-01, 1.797693134862e+308, 3.1531e-01, 2.3720e-03, + 2DIAGNOSTIC, 6, -4.373333662910e-01, 1.797693134862e+308, 3.1760e-01, 2.2850e-03, + 2DIAGNOSTIC, 7, -4.466636378544e-01, 1.797693134862e+308, 3.2013e-01, 2.5308e-03, + 2DIAGNOSTIC, 8, -4.591480756284e-01, 1.797693134862e+308, 3.2237e-01, 2.2461e-03, + 2DIAGNOSTIC, 9, -4.689549573255e-01, 1.797693134862e+308, 3.2495e-01, 2.5790e-03, + 2DIAGNOSTIC, 10, -4.873821442237e-01, 7.095004225791e-03, 3.2818e-01, 3.2299e-03, + 2DIAGNOSTIC, 11, -5.017671478144e-01, 8.795020876305e-03, 3.3085e-01, 2.6650e-03, + 2DIAGNOSTIC, 12, -5.038514051326e-01, 9.467713571238e-03, 3.3364e-01, 2.7881e-03, + 2DIAGNOSTIC, 13, -5.149323941327e-01, 9.745163474623e-03, 3.3703e-01, 3.3972e-03, + 2DIAGNOSTIC, 14, -5.152270163885e-01, 9.179156206246e-03, 3.3942e-01, 2.3890e-03, + 2DIAGNOSTIC, 15, -5.335930010541e-01, 8.644929288380e-03, 3.4177e-01, 2.3479e-03, + 2DIAGNOSTIC, 16, -5.392476416986e-01, 7.629010465380e-03, 3.4411e-01, 2.3389e-03, + 2DIAGNOSTIC, 17, -5.512014015785e-01, 6.786815111001e-03, 3.4676e-01, 2.6479e-03, + 2DIAGNOSTIC, 18, -5.690322171986e-01, 6.409855627087e-03, 3.4907e-01, 2.3148e-03, + 2DIAGNOSTIC, 19, -5.908191530869e-01, 6.423086628268e-03, 3.5235e-01, 3.2759e-03, + 2DIAGNOSTIC, 20, -5.992430904572e-01, 6.589496392734e-03, 3.5758e-01, 5.2309e-03, + 2DIAGNOSTIC, 21, -5.995627455996e-01, 6.532616433899e-03, 3.6075e-01, 3.1700e-03, + 2DIAGNOSTIC, 22, -6.000756657782e-01, 5.947593407248e-03, 3.6351e-01, 2.7590e-03, + 2DIAGNOSTIC, 23, -6.009064346566e-01, 5.160341840598e-03, 3.6662e-01, 3.1099e-03, + 2DIAGNOSTIC, 24, -6.016592954358e-01, 3.976979523331e-03, 3.6948e-01, 2.8608e-03, + 2DIAGNOSTIC, 25, -6.019662422646e-01, 2.945991607685e-03, 3.7244e-01, 2.9659e-03, + 2DIAGNOSTIC, 26, -6.029599379024e-01, 1.875993861163e-03, 3.7545e-01, 3.0079e-03, + 2DIAGNOSTIC, 27, -6.044945809574e-01, 9.910942612018e-04, 3.7838e-01, 2.9302e-03, + 2DIAGNOSTIC, 28, -6.056054855254e-01, 4.413507807327e-04, 3.8130e-01, 2.9140e-03, + 2DIAGNOSTIC, 29, -6.082004964843e-01, 3.418191504259e-04, 3.8403e-01, 2.7330e-03, + 2DIAGNOSTIC, 30, -6.100897651796e-01, 4.012572210681e-04, 3.8718e-01, 3.1550e-03, + 2DIAGNOSTIC, 31, -6.106647282472e-01, 4.336292177133e-04, 3.9047e-01, 3.2861e-03, + 2DIAGNOSTIC, 32, -6.056998491957e-01, 3.492829853676e-04, 3.9402e-01, 3.5539e-03, + 2DIAGNOSTIC, 33, -6.077867001216e-01, 2.868017191730e-04, 3.9682e-01, 2.8000e-03, + 2DIAGNOSTIC, 34, -6.237024986813e-01, 4.570227314422e-04, 3.9967e-01, 2.8501e-03, + 2DIAGNOSTIC, 35, -6.315301359454e-01, 6.861843953767e-04, 4.0286e-01, 3.1879e-03, + 2DIAGNOSTIC, 36, -6.352717306656e-01, 9.043397298407e-04, 4.0832e-01, 5.4569e-03, + 2DIAGNOSTIC, 37, -6.352753343424e-01, 1.049714092813e-03, 4.1187e-01, 3.5481e-03, + 2DIAGNOSTIC, 38, -6.361808061732e-01, 1.114882495662e-03, 4.1444e-01, 2.5721e-03, + 2DIAGNOSTIC, 39, -6.374952922437e-01, 1.116704823971e-03, 4.1701e-01, 2.5749e-03, + 2DIAGNOSTIC, 40, -6.391603135099e-01, 1.054355406048e-03, 4.1967e-01, 2.6519e-03, + 2DIAGNOSTIC, 41, -6.412670857037e-01, 9.326022368670e-04, 4.2257e-01, 2.9089e-03, + 2DIAGNOSTIC, 42, -6.441658613637e-01, 7.064526862757e-04, 4.2600e-01, 3.4242e-03, + 2DIAGNOSTIC, 43, -6.444833810603e-01, 4.493989892540e-04, 4.2830e-01, 2.3050e-03, + 2DIAGNOSTIC, 44, -6.450814137011e-01, 3.508142747224e-04, 4.3060e-01, 2.2941e-03, + 2DIAGNOSTIC, 45, -6.458468977888e-01, 3.188815787693e-04, 4.3296e-01, 2.3649e-03, + 2DIAGNOSTIC, 46, -6.471010662300e-01, 3.123500089368e-04, 4.3565e-01, 2.6829e-03, + 2DIAGNOSTIC, 47, -6.474028604401e-01, 2.790298394571e-04, 4.3830e-01, 2.6569e-03, + 2DIAGNOSTIC, 48, -6.478668212121e-01, 2.351198205761e-04, 4.4076e-01, 2.4581e-03, + 2DIAGNOSTIC, 49, -6.505834171398e-01, 2.119682170315e-04, 4.4374e-01, 2.9769e-03, + 2DIAGNOSTIC, 50, -6.573388898485e-01, 2.520827310948e-04, 4.4715e-01, 3.4089e-03, + 2DIAGNOSTIC, 51, -6.627264331343e-01, 3.365598450709e-04, 4.5035e-01, 3.2001e-03, + 2DIAGNOSTIC, 52, -6.656793216547e-01, 4.403254981991e-04, 4.5391e-01, 3.5670e-03, + 2DIAGNOSTIC, 53, -6.669630729715e-01, 5.131199226528e-04, 4.5622e-01, 2.3069e-03, + 2DIAGNOSTIC, 54, -6.708747688187e-01, 5.747163619188e-04, 4.5884e-01, 2.6181e-03, + 2DIAGNOSTIC, 55, -6.722276311270e-01, 5.956179319447e-04, 4.6149e-01, 2.6550e-03, + 2DIAGNOSTIC, 56, -6.731520650123e-01, 5.771052384785e-04, 4.6407e-01, 2.5780e-03, + 2DIAGNOSTIC, 57, -6.733005758390e-01, 5.088527543200e-04, 4.6641e-01, 2.3360e-03, + 2DIAGNOSTIC, 58, -6.733038244884e-01, 3.990881926851e-04, 4.6906e-01, 2.6522e-03, + 2DIAGNOSTIC, 59, -6.733344424370e-01, 2.767299027696e-04, 4.7135e-01, 2.2941e-03, + 2DIAGNOSTIC, 60, -6.732873594747e-01, 1.853519182824e-04, 4.7604e-01, 4.6809e-03, + 2DIAGNOSTIC, 61, -6.732876335460e-01, 1.219542874062e-04, 4.7947e-01, 3.4370e-03, + 2DIAGNOSTIC, 62, -6.732876429725e-01, 7.229632264033e-05, 4.8264e-01, 3.1638e-03, + 2DIAGNOSTIC, 63, -6.732876461663e-01, 2.667383268834e-05, 4.8617e-01, 3.5291e-03, + 2DIAGNOSTIC, 64, -6.732876481192e-01, 9.181795333421e-06, 4.8948e-01, 3.3162e-03, + 2DIAGNOSTIC, 65, -6.732876485566e-01, 1.221844792121e-06, 4.9212e-01, 2.6391e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.957757026030e-01, 1.797693134862e+308, 5.6041e-01, 6.8289e-02, + 2DIAGNOSTIC, 2, -4.965363756068e-01, 1.797693134862e+308, 5.7217e-01, 1.1761e-02, + 2DIAGNOSTIC, 3, -4.978251444741e-01, 1.797693134862e+308, 5.8472e-01, 1.2554e-02, + 2DIAGNOSTIC, 4, -4.997686540757e-01, 1.797693134862e+308, 5.9732e-01, 1.2597e-02, + 2DIAGNOSTIC, 5, -5.021959200093e-01, 1.797693134862e+308, 6.0984e-01, 1.2522e-02, + 2DIAGNOSTIC, 6, -5.045422969313e-01, 1.797693134862e+308, 6.2177e-01, 1.1927e-02, + 2DIAGNOSTIC, 7, -5.067189034624e-01, 1.797693134862e+308, 6.3350e-01, 1.1727e-02, + 2DIAGNOSTIC, 8, -5.072583155262e-01, 1.797693134862e+308, 6.4679e-01, 1.3289e-02, + 2DIAGNOSTIC, 9, -5.077210800292e-01, 1.797693134862e+308, 6.6745e-01, 2.0661e-02, + 2DIAGNOSTIC, 10, -5.077743362262e-01, 1.814101255411e-03, 6.8177e-01, 1.4324e-02, + 2DIAGNOSTIC, 11, -5.079505635953e-01, 1.462063148344e-03, 6.9412e-01, 1.2349e-02, + 2DIAGNOSTIC, 12, -5.080444071139e-01, 1.077804225763e-03, 7.0760e-01, 1.3484e-02, + 2DIAGNOSTIC, 13, -5.080737526832e-01, 7.130351981824e-04, 7.1911e-01, 1.1510e-02, + 2DIAGNOSTIC, 14, -5.081083638788e-01, 4.154178473674e-04, 7.3087e-01, 1.1754e-02, + 2DIAGNOSTIC, 15, -5.081788645116e-01, 2.125934154198e-04, 7.4404e-01, 1.3175e-02, + 2DIAGNOSTIC, 16, -5.082623415249e-01, 9.966649519977e-05, 7.6202e-01, 1.7978e-02, + 2DIAGNOSTIC, 17, -5.082677147800e-01, 6.296995772487e-05, 7.7514e-01, 1.3120e-02, + 2DIAGNOSTIC, 18, -5.082685239141e-01, 4.135082781579e-05, 7.8773e-01, 1.2585e-02, + 2DIAGNOSTIC, 19, -5.082765564151e-01, 3.237000791781e-05, 7.9967e-01, 1.1944e-02, + 2DIAGNOSTIC, 20, -5.082803488276e-01, 2.289937165229e-05, 8.1022e-01, 1.0545e-02, + 2DIAGNOSTIC, 21, -5.083057964262e-01, 1.765825605203e-05, 8.2222e-01, 1.2003e-02, + 2DIAGNOSTIC, 22, -5.083655095813e-01, 1.530695522065e-05, 8.3569e-01, 1.3471e-02, + 2DIAGNOSTIC, 23, -5.083766557247e-01, 1.285005496660e-05, 8.4774e-01, 1.2054e-02, + 2DIAGNOSTIC, 24, -5.083704439392e-01, 1.018347158386e-05, 8.5979e-01, 1.2045e-02, + 2DIAGNOSTIC, 25, -5.083663745935e-01, 8.365341509761e-06, 8.7057e-01, 1.0782e-02, + 2DIAGNOSTIC, 26, -5.083574918896e-01, 7.622607105802e-06, 8.8236e-01, 1.1787e-02, + 2DIAGNOSTIC, 27, -5.083676608615e-01, 6.637378079953e-06, 8.9408e-01, 1.1723e-02, + 2DIAGNOSTIC, 28, -5.083902503772e-01, 5.665097322867e-06, 9.0599e-01, 1.1914e-02, + 2DIAGNOSTIC, 29, -5.084448073899e-01, 5.555626706066e-06, 9.3750e-01, 3.1507e-02, + 2DIAGNOSTIC, 30, -5.084455404796e-01, 5.101608020475e-06, 9.5167e-01, 1.4165e-02, + 2DIAGNOSTIC, 31, -5.084403239085e-01, 4.651212151513e-06, 9.6537e-01, 1.3708e-02, + 2DIAGNOSTIC, 32, -5.084351826613e-01, 4.849258987555e-06, 9.7872e-01, 1.3349e-02, + 2DIAGNOSTIC, 33, -5.084241691940e-01, 4.662999448776e-06, 9.9087e-01, 1.2142e-02, + 2DIAGNOSTIC, 34, -5.084250072312e-01, 4.037300533485e-06, 1.0033e+00, 1.2438e-02, + 2DIAGNOSTIC, 35, -5.084259025714e-01, 3.107158461021e-06, 1.0166e+00, 1.3324e-02, + 2DIAGNOSTIC, 36, -5.084212699665e-01, 1.821720048832e-06, 1.0304e+00, 1.3809e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.218905166807e-01, 1.797693134862e+308, 1.2492e+00, 2.1879e-01, + Elapsed time (stage 0): 1.3670e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -1.013993493343e+00, 1.797693134862e+308, 4.5016e-02, 4.5016e-02, + 2DIAGNOSTIC, 2, -1.015640820013e+00, 1.797693134862e+308, 4.6928e-02, 1.9121e-03, + 2DIAGNOSTIC, 3, -1.017950928370e+00, 1.797693134862e+308, 4.8564e-02, 1.6360e-03, + 2DIAGNOSTIC, 4, -1.020278227874e+00, 1.797693134862e+308, 5.0152e-02, 1.5881e-03, + 2DIAGNOSTIC, 5, -1.024731667969e+00, 1.797693134862e+308, 5.1809e-02, 1.6570e-03, + 2DIAGNOSTIC, 6, -1.030299963805e+00, 1.797693134862e+308, 5.3456e-02, 1.6470e-03, + 2DIAGNOSTIC, 7, -1.037666169952e+00, 1.797693134862e+308, 5.5342e-02, 1.8861e-03, + 2DIAGNOSTIC, 8, -1.064980618191e+00, 1.797693134862e+308, 5.7508e-02, 2.1651e-03, + 2DIAGNOSTIC, 9, -1.085635625928e+00, 1.797693134862e+308, 6.0294e-02, 2.7869e-03, + 2DIAGNOSTIC, 10, -1.085630412536e+00, 4.782736681163e-03, 6.2334e-02, 2.0392e-03, + 2DIAGNOSTIC, 11, -1.087330404565e+00, 4.871127745193e-03, 6.4267e-02, 1.9338e-03, + 2DIAGNOSTIC, 12, -1.089459313898e+00, 4.595508491597e-03, 6.6260e-02, 1.9929e-03, + 2DIAGNOSTIC, 13, -1.091447487861e+00, 4.028244328164e-03, 6.8265e-02, 2.0051e-03, + 2DIAGNOSTIC, 14, -1.093101521908e+00, 3.248951893434e-03, 7.0357e-02, 2.0919e-03, + 2DIAGNOSTIC, 15, -1.096903860520e+00, 2.434324579772e-03, 7.2907e-02, 2.5499e-03, + 2DIAGNOSTIC, 16, -1.098223994451e+00, 1.624044565067e-03, 7.5216e-02, 2.3091e-03, + 2DIAGNOSTIC, 17, -1.098653526523e+00, 8.774253818277e-04, 7.7800e-02, 2.5840e-03, + 2DIAGNOSTIC, 18, -1.097636419360e+00, 5.179344980262e-04, 8.0056e-02, 2.2559e-03, + 2DIAGNOSTIC, 19, -1.096484485893e+00, 4.243267788151e-04, 8.2038e-02, 1.9820e-03, + 2DIAGNOSTIC, 20, -1.094252415860e+00, 2.708508617408e-04, 8.4281e-02, 2.2430e-03, + 2DIAGNOSTIC, 21, -1.094530660202e+00, 1.321680038629e-04, 8.6272e-02, 1.9910e-03, + 2DIAGNOSTIC, 22, -1.093325764011e+00, 4.920250490509e-06, 8.8312e-02, 2.0399e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.924266901038e-01, 1.797693134862e+308, 1.3869e-01, 5.0380e-02, + 2DIAGNOSTIC, 2, -6.922974656178e-01, 1.797693134862e+308, 1.4197e-01, 3.2802e-03, + 2DIAGNOSTIC, 3, -6.941520491934e-01, 1.797693134862e+308, 1.4516e-01, 3.1900e-03, + 2DIAGNOSTIC, 4, -6.983789255039e-01, 1.797693134862e+308, 1.4773e-01, 2.5661e-03, + 2DIAGNOSTIC, 5, -7.043828553606e-01, 1.797693134862e+308, 1.5011e-01, 2.3849e-03, + 2DIAGNOSTIC, 6, -7.138605675996e-01, 1.797693134862e+308, 1.5240e-01, 2.2871e-03, + 2DIAGNOSTIC, 7, -7.251435647732e-01, 1.797693134862e+308, 1.5476e-01, 2.3601e-03, + 2DIAGNOSTIC, 8, -7.380514013425e-01, 1.797693134862e+308, 1.5855e-01, 3.7849e-03, + 2DIAGNOSTIC, 9, -7.397438361778e-01, 1.797693134862e+308, 1.6204e-01, 3.4990e-03, + 2DIAGNOSTIC, 10, -7.401310734509e-01, 5.339687900409e-03, 1.6551e-01, 3.4690e-03, + 2DIAGNOSTIC, 11, -7.402317103239e-01, 4.862874797280e-03, 1.6835e-01, 2.8379e-03, + 2DIAGNOSTIC, 12, -7.405055320780e-01, 4.033128080585e-03, 1.7109e-01, 2.7418e-03, + 2DIAGNOSTIC, 13, -7.411171382071e-01, 3.041425272452e-03, 1.7392e-01, 2.8279e-03, + 2DIAGNOSTIC, 14, -7.419275604298e-01, 2.062340718913e-03, 1.7674e-01, 2.8141e-03, + 2DIAGNOSTIC, 15, -7.425713710388e-01, 1.204981340651e-03, 1.7992e-01, 3.1810e-03, + 2DIAGNOSTIC, 16, -7.428005625597e-01, 5.819548438629e-04, 1.8310e-01, 3.1829e-03, + 2DIAGNOSTIC, 17, -7.427963027830e-01, 2.328984730146e-04, 1.8624e-01, 3.1402e-03, + 2DIAGNOSTIC, 18, -7.429679155069e-01, 1.855984050362e-04, 1.8905e-01, 2.8121e-03, + 2DIAGNOSTIC, 19, -7.433649528641e-01, 1.688355627779e-04, 1.9224e-01, 3.1850e-03, + 2DIAGNOSTIC, 20, -7.435148692687e-01, 1.484869404826e-04, 1.9507e-01, 2.8329e-03, + 2DIAGNOSTIC, 21, -7.437906152393e-01, 1.236167013535e-04, 1.9803e-01, 2.9602e-03, + 2DIAGNOSTIC, 22, -7.449354908564e-01, 1.148108793944e-04, 2.0128e-01, 3.2461e-03, + 2DIAGNOSTIC, 23, -7.453347141685e-01, 1.125663915293e-04, 2.0408e-01, 2.8040e-03, + 2DIAGNOSTIC, 24, -7.459132587012e-01, 1.223316338157e-04, 2.0658e-01, 2.5051e-03, + 2DIAGNOSTIC, 25, -7.467062065502e-01, 1.422425660154e-04, 2.0966e-01, 3.0730e-03, + 2DIAGNOSTIC, 26, -7.467279262902e-01, 1.509417138272e-04, 2.1242e-01, 2.7630e-03, + 2DIAGNOSTIC, 27, -7.473095922337e-01, 1.531689257322e-04, 2.1530e-01, 2.8839e-03, + 2DIAGNOSTIC, 28, -7.475416107173e-01, 1.461956215029e-04, 2.1842e-01, 3.1161e-03, + 2DIAGNOSTIC, 29, -7.475193437327e-01, 1.310860866089e-04, 2.2123e-01, 2.8059e-03, + 2DIAGNOSTIC, 30, -7.474705203037e-01, 1.061507115007e-04, 2.2371e-01, 2.4869e-03, + 2DIAGNOSTIC, 31, -7.474371414351e-01, 7.569749823215e-05, 2.2642e-01, 2.7030e-03, + 2DIAGNOSTIC, 32, -7.473861866155e-01, 5.330165859059e-05, 2.2879e-01, 2.3739e-03, + 2DIAGNOSTIC, 33, -7.473516989201e-01, 3.145445969049e-05, 2.3121e-01, 2.4219e-03, + 2DIAGNOSTIC, 34, -7.474169087889e-01, 1.518237048158e-05, 2.3398e-01, 2.7671e-03, + 2DIAGNOSTIC, 35, -7.473166277712e-01, 6.234242088898e-06, 2.3642e-01, 2.4440e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.520699146992e-01, 1.797693134862e+308, 3.0235e-01, 6.5924e-02, + 2DIAGNOSTIC, 2, -5.522088160240e-01, 1.797693134862e+308, 3.1592e-01, 1.3568e-02, + 2DIAGNOSTIC, 3, -5.524015113176e-01, 1.797693134862e+308, 3.2882e-01, 1.2902e-02, + 2DIAGNOSTIC, 4, -5.527454416772e-01, 1.797693134862e+308, 3.4168e-01, 1.2860e-02, + 2DIAGNOSTIC, 5, -5.531952646550e-01, 1.797693134862e+308, 3.5490e-01, 1.3222e-02, + 2DIAGNOSTIC, 6, -5.539754419355e-01, 1.797693134862e+308, 3.6777e-01, 1.2873e-02, + 2DIAGNOSTIC, 7, -5.557373389544e-01, 1.797693134862e+308, 3.8214e-01, 1.4364e-02, + 2DIAGNOSTIC, 8, -5.599563004598e-01, 1.797693134862e+308, 3.9778e-01, 1.5648e-02, + 2DIAGNOSTIC, 9, -5.756400619268e-01, 1.797693134862e+308, 4.2798e-01, 3.0192e-02, + 2DIAGNOSTIC, 10, -5.756811817760e-01, 2.594515569307e-03, 4.4303e-01, 1.5053e-02, + 2DIAGNOSTIC, 11, -5.762706821125e-01, 2.952220605363e-03, 4.5756e-01, 1.4527e-02, + 2DIAGNOSTIC, 12, -5.770766965559e-01, 3.032721483644e-03, 4.7254e-01, 1.4980e-02, + 2DIAGNOSTIC, 13, -5.779410011119e-01, 2.862666223056e-03, 4.8691e-01, 1.4373e-02, + 2DIAGNOSTIC, 14, -5.788396007127e-01, 2.493304059167e-03, 4.9957e-01, 1.2660e-02, + 2DIAGNOSTIC, 15, -5.798373927963e-01, 1.995847313452e-03, 5.1241e-01, 1.2842e-02, + 2DIAGNOSTIC, 16, -5.810924974680e-01, 1.450794578435e-03, 5.2571e-01, 1.3297e-02, + 2DIAGNOSTIC, 17, -5.822892010034e-01, 9.266597829995e-04, 5.4021e-01, 1.4503e-02, + 2DIAGNOSTIC, 18, -5.830807112602e-01, 5.033712311238e-04, 5.5719e-01, 1.6981e-02, + 2DIAGNOSTIC, 19, -5.834544174967e-01, 5.020288118617e-04, 5.6874e-01, 1.1552e-02, + 2DIAGNOSTIC, 20, -5.835625622566e-01, 4.581224555490e-04, 5.8049e-01, 1.1750e-02, + 2DIAGNOSTIC, 21, -5.836557092527e-01, 3.919138329603e-04, 5.9356e-01, 1.3069e-02, + 2DIAGNOSTIC, 22, -5.836949327434e-01, 3.141151895863e-04, 6.0511e-01, 1.1550e-02, + 2DIAGNOSTIC, 23, -5.838600989834e-01, 2.360415115386e-04, 6.1884e-01, 1.3727e-02, + 2DIAGNOSTIC, 24, -5.839875927491e-01, 1.637564676656e-04, 6.3859e-01, 1.9751e-02, + 2DIAGNOSTIC, 25, -5.840089957966e-01, 1.021198497362e-04, 6.5119e-01, 1.2600e-02, + 2DIAGNOSTIC, 26, -5.841205814296e-01, 6.160033206752e-05, 6.6384e-01, 1.2646e-02, + 2DIAGNOSTIC, 27, -5.842169686755e-01, 4.186080003127e-05, 6.7786e-01, 1.4025e-02, + 2DIAGNOSTIC, 28, -5.842510397034e-01, 3.411718928296e-05, 7.0188e-01, 2.4021e-02, + 2DIAGNOSTIC, 29, -5.842468699222e-01, 3.007962224758e-05, 7.1395e-01, 1.2063e-02, + 2DIAGNOSTIC, 30, -5.842522444506e-01, 2.547378578997e-05, 7.2594e-01, 1.1996e-02, + 2DIAGNOSTIC, 31, -5.842579072848e-01, 2.045433712948e-05, 7.3792e-01, 1.1974e-02, + 2DIAGNOSTIC, 32, -5.842678264800e-01, 1.459439868653e-05, 7.4965e-01, 1.1735e-02, + 2DIAGNOSTIC, 33, -5.842871840097e-01, 1.053111176306e-05, 7.6155e-01, 1.1896e-02, + 2DIAGNOSTIC, 34, -5.843177147594e-01, 8.127045456510e-06, 7.7352e-01, 1.1970e-02, + 2DIAGNOSTIC, 35, -5.843670498320e-01, 6.149493541288e-06, 7.8571e-01, 1.2192e-02, + 2DIAGNOSTIC, 36, -5.844689196926e-01, 6.667230358224e-06, 7.9916e-01, 1.3454e-02, + 2DIAGNOSTIC, 37, -5.846347577774e-01, 1.006313558885e-05, 8.1129e-01, 1.2127e-02, + 2DIAGNOSTIC, 38, -5.848911533579e-01, 1.613372192425e-05, 8.3089e-01, 1.9603e-02, + 2DIAGNOSTIC, 39, -5.849029104053e-01, 2.047296307995e-05, 8.4311e-01, 1.2216e-02, + 2DIAGNOSTIC, 40, -5.849143268716e-01, 2.298023760927e-05, 8.5801e-01, 1.4897e-02, + 2DIAGNOSTIC, 41, -5.849718005657e-01, 2.402959193894e-05, 8.7045e-01, 1.2444e-02, + 2DIAGNOSTIC, 42, -5.850277547909e-01, 2.352505174579e-05, 8.8539e-01, 1.4943e-02, + 2DIAGNOSTIC, 43, -5.850706216978e-01, 2.153336049206e-05, 9.0206e-01, 1.6664e-02, + 2DIAGNOSTIC, 44, -5.850975391522e-01, 1.830864809011e-05, 9.1387e-01, 1.1817e-02, + 2DIAGNOSTIC, 45, -5.851397148782e-01, 1.458678367360e-05, 9.2738e-01, 1.3504e-02, + 2DIAGNOSTIC, 46, -5.851448977821e-01, 1.081560721184e-05, 9.3910e-01, 1.1724e-02, + 2DIAGNOSTIC, 47, -5.851553969543e-01, 8.004456441401e-06, 9.5128e-01, 1.2181e-02, + 2DIAGNOSTIC, 48, -5.851663515359e-01, 7.350369415925e-06, 9.6350e-01, 1.2217e-02, + 2DIAGNOSTIC, 49, -5.851940636073e-01, 6.483262821530e-06, 9.7588e-01, 1.2380e-02, + 2DIAGNOSTIC, 50, -5.852322988929e-01, 5.565044011713e-06, 9.8929e-01, 1.3408e-02, + 2DIAGNOSTIC, 51, -5.852799150167e-01, 5.208925463983e-06, 1.0062e+00, 1.6925e-02, + 2DIAGNOSTIC, 52, -5.852918039423e-01, 5.059724930489e-06, 1.0184e+00, 1.2193e-02, + 2DIAGNOSTIC, 53, -5.853050655201e-01, 5.013286515844e-06, 1.0307e+00, 1.2288e-02, + 2DIAGNOSTIC, 54, -5.853233524570e-01, 4.946658545286e-06, 1.0432e+00, 1.2475e-02, + 2DIAGNOSTIC, 55, -5.853969971619e-01, 5.489752147068e-06, 1.0568e+00, 1.3638e-02, + 2DIAGNOSTIC, 56, -5.854768319796e-01, 6.266164533985e-06, 1.0735e+00, 1.6734e-02, + 2DIAGNOSTIC, 57, -5.854799451902e-01, 6.577696979305e-06, 1.0919e+00, 1.8347e-02, + 2DIAGNOSTIC, 58, -5.854787939955e-01, 6.401717634500e-06, 1.1064e+00, 1.4471e-02, + 2DIAGNOSTIC, 59, -5.854755381162e-01, 5.876248500639e-06, 1.1206e+00, 1.4284e-02, + 2DIAGNOSTIC, 60, -5.854722032656e-01, 5.120627813705e-06, 1.1331e+00, 1.2497e-02, + 2DIAGNOSTIC, 61, -5.854728456691e-01, 4.324907719205e-06, 1.1460e+00, 1.2889e-02, + 2DIAGNOSTIC, 62, -5.854739994245e-01, 3.297340122943e-06, 1.1605e+00, 1.4519e-02, + 2DIAGNOSTIC, 63, -5.854746046166e-01, 2.155575689736e-06, 1.1736e+00, 1.3044e-02, + 2DIAGNOSTIC, 64, -5.854738563677e-01, 1.017860320175e-06, 1.1889e+00, 1.5297e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.817510752875e-01, 1.797693134862e+308, 1.3812e+00, 1.9227e-01, + Elapsed time (stage 1): 1.4063e+00 + + +Total elapsed time: 2.7745e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:27:13 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 34 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 76 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 83.43% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 83.43% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[15555 12257 12499 3826 21499 15814 1031 0 0 1980 1373 6265 + 0 2832 571 1082 483 6748 551 1175 0 0 0 0 + 373 223 0 0 0 0 0 191 0 0] +[186958 94557 98486 40832 17225 19670 21702 5380 9554 15305 + 13629 9980 9934 8946 9739 11120 2346 7041 2580 1168 + 1292 1087 1308 1604 784 928 350 914 1188 990 + 785 607 0 576] +[ 0 937 13474 10448 2268 9813 495 593 14772 210 2111 13669 + 19529 627 527 5425 13356 1950 0 0 0 0 418 186 + 579 0 11163 383 0 9208 0 0 179 242] +[ 0 19398 1867 0 32947 734 14934 8529 160146 7885 + 0 264 427 512 16107 0 147344 22582 2512 944 + 2229 225 5435 2675 462 1043 152378 15556 1454 173 + 2628 5427 4636 3008] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:37:39 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:37:44 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:31 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:31 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:31 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:42 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:47 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC001 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:43:04 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.899999737739563 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:43:29 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:46:28 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:46:29 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:47:49 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:47:49 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55e24e138d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [75.2585, 121.949, -129.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e24dfaf730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc9d3f83010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55e24e13c020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 61.0027, -119.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e24e1420c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc9d08c4010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55e24e152840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [75.2585, 121.949, -129.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e24e13e890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc9cbbf0010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55e24e1563e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 61.0027, -119.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e24e145130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc9c8531010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.877033114309e-01, 1.797693134862e+308, 2.5204e-01, 2.5204e-01, + 2DIAGNOSTIC, 2, -4.901131791822e-01, 1.797693134862e+308, 2.5338e-01, 1.3390e-03, + 2DIAGNOSTIC, 3, -4.933533540394e-01, 1.797693134862e+308, 2.5473e-01, 1.3490e-03, + 2DIAGNOSTIC, 4, -4.967956689342e-01, 1.797693134862e+308, 2.5603e-01, 1.2951e-03, + 2DIAGNOSTIC, 5, -5.087479400760e-01, 1.797693134862e+308, 2.5739e-01, 1.3661e-03, + 2DIAGNOSTIC, 6, -5.162271248019e-01, 1.797693134862e+308, 2.5870e-01, 1.3061e-03, + 2DIAGNOSTIC, 7, -5.331212362346e-01, 1.797693134862e+308, 2.5999e-01, 1.2910e-03, + 2DIAGNOSTIC, 8, -5.776495245995e-01, 1.797693134862e+308, 2.6186e-01, 1.8730e-03, + 2DIAGNOSTIC, 9, -6.198207397678e-01, 1.797693134862e+308, 2.6468e-01, 2.8181e-03, + 2DIAGNOSTIC, 10, -6.207125220599e-01, 1.721780923458e-02, 2.6633e-01, 1.6429e-03, + 2DIAGNOSTIC, 11, -6.208748152057e-01, 1.731545436775e-02, 2.6820e-01, 1.8702e-03, + 2DIAGNOSTIC, 12, -6.201401836327e-01, 1.595037563372e-02, 2.6981e-01, 1.6141e-03, + 2DIAGNOSTIC, 13, -6.204157746072e-01, 1.350247502721e-02, 2.7137e-01, 1.5609e-03, + 2DIAGNOSTIC, 14, -6.212872167547e-01, 1.035068764578e-02, 2.7298e-01, 1.6060e-03, + 2DIAGNOSTIC, 15, -6.222722385908e-01, 7.176166372116e-03, 2.7500e-01, 2.0232e-03, + 2DIAGNOSTIC, 16, -6.225901195139e-01, 4.050406386760e-03, 2.7661e-01, 1.6141e-03, + 2DIAGNOSTIC, 17, -6.228188651283e-01, 1.436242664357e-03, 2.7845e-01, 1.8392e-03, + 2DIAGNOSTIC, 18, -6.241973595964e-01, 2.376884927703e-04, 2.8033e-01, 1.8759e-03, + 2DIAGNOSTIC, 19, -6.252949011233e-01, 2.756123732247e-04, 2.8219e-01, 1.8570e-03, + 2DIAGNOSTIC, 20, -6.253936338712e-01, 3.074215325922e-04, 2.8405e-01, 1.8671e-03, + 2DIAGNOSTIC, 21, -6.249256956074e-01, 3.019222405584e-04, 2.8567e-01, 1.6170e-03, + 2DIAGNOSTIC, 22, -6.255471669614e-01, 2.674018822419e-04, 2.8778e-01, 2.1071e-03, + 2DIAGNOSTIC, 23, -6.256197962582e-01, 2.174332216921e-04, 2.8938e-01, 1.6000e-03, + 2DIAGNOSTIC, 24, -6.262717136121e-01, 1.815345646164e-04, 2.9117e-01, 1.7889e-03, + 2DIAGNOSTIC, 25, -6.266542305897e-01, 1.583524622289e-04, 2.9350e-01, 2.3310e-03, + 2DIAGNOSTIC, 26, -6.267726838624e-01, 1.310075913234e-04, 2.9534e-01, 1.8480e-03, + 2DIAGNOSTIC, 27, -6.268067662226e-01, 9.791600685749e-05, 2.9695e-01, 1.6079e-03, + 2DIAGNOSTIC, 28, -6.263892003241e-01, 7.406531739028e-05, 2.9880e-01, 1.8461e-03, + 2DIAGNOSTIC, 29, -6.268983555174e-01, 7.167593390312e-05, 3.0048e-01, 1.6789e-03, + 2DIAGNOSTIC, 30, -6.264788698017e-01, 5.758874083132e-05, 3.0210e-01, 1.6181e-03, + 2DIAGNOSTIC, 31, -6.266031978579e-01, 3.385275001520e-05, 3.0392e-01, 1.8280e-03, + 2DIAGNOSTIC, 32, -6.266372726517e-01, 1.851969414449e-05, 3.0629e-01, 2.3630e-03, + 2DIAGNOSTIC, 33, -6.266715497502e-01, 3.853641910523e-06, 3.0794e-01, 1.6561e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.707629494228e-01, 1.797693134862e+308, 5.5903e-01, 2.5109e-01, + 2DIAGNOSTIC, 2, -4.696469049592e-01, 1.797693134862e+308, 5.6160e-01, 2.5702e-03, + 2DIAGNOSTIC, 3, -4.747426802525e-01, 1.797693134862e+308, 5.6430e-01, 2.7041e-03, + 2DIAGNOSTIC, 4, -4.761020184679e-01, 1.797693134862e+308, 5.6686e-01, 2.5592e-03, + 2DIAGNOSTIC, 5, -4.755039943030e-01, 1.797693134862e+308, 5.6892e-01, 2.0549e-03, + 2DIAGNOSTIC, 6, -4.778647396206e-01, 1.797693134862e+308, 5.7159e-01, 2.6689e-03, + 2DIAGNOSTIC, 7, -4.795068317081e-01, 1.797693134862e+308, 5.7420e-01, 2.6121e-03, + 2DIAGNOSTIC, 8, -4.790952010813e-01, 1.797693134862e+308, 5.7729e-01, 3.0940e-03, + 2DIAGNOSTIC, 9, -4.798012494356e-01, 1.797693134862e+308, 5.7981e-01, 2.5141e-03, + 2DIAGNOSTIC, 10, -4.812655031815e-01, 1.459257121131e-03, 5.8232e-01, 2.5139e-03, + 2DIAGNOSTIC, 11, -4.845743311445e-01, 1.365804016960e-03, 5.8612e-01, 3.7959e-03, + 2DIAGNOSTIC, 12, -4.894467228009e-01, 1.339262756769e-03, 5.8841e-01, 2.2981e-03, + 2DIAGNOSTIC, 13, -4.901031522840e-01, 1.454896002912e-03, 5.9067e-01, 2.2571e-03, + 2DIAGNOSTIC, 14, -4.906791417032e-01, 1.510054556389e-03, 5.9294e-01, 2.2690e-03, + 2DIAGNOSTIC, 15, -4.913923420995e-01, 1.423730879509e-03, 5.9612e-01, 3.1829e-03, + 2DIAGNOSTIC, 16, -4.916364189610e-01, 1.309785228949e-03, 5.9838e-01, 2.2531e-03, + 2DIAGNOSTIC, 17, -4.918658829565e-01, 1.152701900223e-03, 6.0093e-01, 2.5539e-03, + 2DIAGNOSTIC, 18, -4.920660071627e-01, 9.011868919793e-04, 6.0319e-01, 2.2640e-03, + 2DIAGNOSTIC, 19, -4.934325952323e-01, 6.594322604016e-04, 6.0543e-01, 2.2390e-03, + 2DIAGNOSTIC, 20, -4.941166881284e-01, 4.422202749772e-04, 6.0864e-01, 3.2029e-03, + 2DIAGNOSTIC, 21, -4.942909007753e-01, 2.988383412625e-04, 6.1180e-01, 3.1660e-03, + 2DIAGNOSTIC, 22, -4.943411049138e-01, 2.727600789924e-04, 6.1406e-01, 2.2562e-03, + 2DIAGNOSTIC, 23, -4.947146891908e-01, 2.498246840402e-04, 6.1629e-01, 2.2290e-03, + 2DIAGNOSTIC, 24, -4.950253599535e-01, 2.260353095533e-04, 6.1857e-01, 2.2800e-03, + 2DIAGNOSTIC, 25, -4.936937929076e-01, 1.681427998455e-04, 6.2114e-01, 2.5718e-03, + 2DIAGNOSTIC, 26, -4.939007769857e-01, 1.105872523774e-04, 6.2338e-01, 2.2440e-03, + 2DIAGNOSTIC, 27, -4.957033204095e-01, 9.107148789426e-05, 6.2687e-01, 3.4831e-03, + 2DIAGNOSTIC, 28, -4.958326343607e-01, 6.915100716190e-05, 6.2915e-01, 2.2810e-03, + 2DIAGNOSTIC, 29, -4.959397718696e-01, 7.206150948934e-05, 6.3172e-01, 2.5699e-03, + 2DIAGNOSTIC, 30, -4.958490616686e-01, 8.057725845673e-05, 6.3398e-01, 2.2581e-03, + 2DIAGNOSTIC, 31, -4.960900948106e-01, 8.898402043495e-05, 6.3652e-01, 2.5492e-03, + 2DIAGNOSTIC, 32, -4.962879413755e-01, 9.182943397782e-05, 6.3873e-01, 2.2080e-03, + 2DIAGNOSTIC, 33, -4.964196146692e-01, 9.418097354288e-05, 6.4102e-01, 2.2910e-03, + 2DIAGNOSTIC, 34, -4.966042370220e-01, 9.723210509624e-05, 6.4328e-01, 2.2590e-03, + 2DIAGNOSTIC, 35, -4.979618961124e-01, 9.168040105733e-05, 6.4616e-01, 2.8791e-03, + 2DIAGNOSTIC, 36, -4.984506427278e-01, 8.763632609482e-05, 6.4871e-01, 2.5461e-03, + 2DIAGNOSTIC, 37, -4.974072594227e-01, 8.743747481485e-05, 6.5253e-01, 3.8180e-03, + 2DIAGNOSTIC, 38, -4.976847838421e-01, 8.604823253353e-05, 6.5474e-01, 2.2149e-03, + 2DIAGNOSTIC, 39, -4.978247418829e-01, 8.010522030380e-05, 6.5700e-01, 2.2571e-03, + 2DIAGNOSTIC, 40, -4.981357563874e-01, 6.944115410537e-05, 6.5925e-01, 2.2511e-03, + 2DIAGNOSTIC, 41, -4.988546874233e-01, 6.614758062214e-05, 6.6156e-01, 2.3122e-03, + 2DIAGNOSTIC, 42, -5.003986579830e-01, 8.109387680329e-05, 6.6391e-01, 2.3460e-03, + 2DIAGNOSTIC, 43, -5.018865039924e-01, 1.093007040561e-04, 6.6792e-01, 4.0171e-03, + 2DIAGNOSTIC, 44, -5.020798165997e-01, 1.299177682291e-04, 6.7012e-01, 2.1980e-03, + 2DIAGNOSTIC, 45, -5.021272903864e-01, 1.554085429336e-04, 6.7262e-01, 2.4951e-03, + 2DIAGNOSTIC, 46, -5.022521839018e-01, 1.732108968709e-04, 6.7512e-01, 2.5051e-03, + 2DIAGNOSTIC, 47, -5.020857632678e-01, 1.584171960731e-04, 6.7730e-01, 2.1791e-03, + 2DIAGNOSTIC, 48, -5.020248340087e-01, 1.316028204041e-04, 6.7952e-01, 2.2218e-03, + 2DIAGNOSTIC, 49, -5.021685329616e-01, 9.691673605558e-05, 6.8172e-01, 2.1961e-03, + 2DIAGNOSTIC, 50, -5.023404932138e-01, 6.014662057295e-05, 6.8399e-01, 2.2671e-03, + 2DIAGNOSTIC, 51, -5.028166958730e-01, 3.233972785802e-05, 6.8648e-01, 2.4939e-03, + 2DIAGNOSTIC, 52, -5.028624760737e-01, 1.970877236824e-05, 6.8961e-01, 3.1340e-03, + 2DIAGNOSTIC, 53, -5.032371182421e-01, 2.605683381985e-05, 6.9217e-01, 2.5580e-03, + 2DIAGNOSTIC, 54, -5.033317811829e-01, 3.271367085173e-05, 6.9445e-01, 2.2790e-03, + 2DIAGNOSTIC, 55, -5.038633978818e-01, 4.200954854746e-05, 6.9702e-01, 2.5649e-03, + 2DIAGNOSTIC, 56, -5.049521396344e-01, 5.936175850591e-05, 6.9982e-01, 2.8021e-03, + 2DIAGNOSTIC, 57, -5.051690664529e-01, 7.074325971698e-05, 7.0206e-01, 2.2380e-03, + 2DIAGNOSTIC, 58, -5.050164005581e-01, 7.300481333268e-05, 7.0461e-01, 2.5508e-03, + 2DIAGNOSTIC, 59, -5.054991766491e-01, 7.453906228076e-05, 7.0679e-01, 2.1868e-03, + 2DIAGNOSTIC, 60, -5.059279033832e-01, 7.435131644327e-05, 7.0936e-01, 2.5640e-03, + 2DIAGNOSTIC, 61, -5.063215770535e-01, 7.502824767467e-05, 7.1153e-01, 2.1751e-03, + 2DIAGNOSTIC, 62, -5.061370643324e-01, 6.717247031392e-05, 7.1401e-01, 2.4760e-03, + 2DIAGNOSTIC, 63, -5.053619467268e-01, 4.985893181698e-05, 7.1649e-01, 2.4829e-03, + 2DIAGNOSTIC, 64, -5.053677727890e-01, 2.941674176041e-05, 7.1898e-01, 2.4910e-03, + 2DIAGNOSTIC, 65, -5.055686358533e-01, 1.282350434810e-05, 7.2163e-01, 2.6510e-03, + 2DIAGNOSTIC, 66, -5.057282486292e-01, 6.183801945100e-06, 7.2465e-01, 3.0169e-03, + 2DIAGNOSTIC, 67, -5.057704590263e-01, 1.585457369779e-06, 7.2717e-01, 2.5170e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.759007612773e-01, 1.797693134862e+308, 9.8881e-01, 2.6164e-01, + 2DIAGNOSTIC, 2, -3.767633307335e-01, 1.797693134862e+308, 1.0012e+00, 1.2400e-02, + 2DIAGNOSTIC, 3, -3.786248392525e-01, 1.797693134862e+308, 1.0139e+00, 1.2687e-02, + 2DIAGNOSTIC, 4, -3.800447181702e-01, 1.797693134862e+308, 1.0264e+00, 1.2491e-02, + 2DIAGNOSTIC, 5, -3.817584522830e-01, 1.797693134862e+308, 1.0385e+00, 1.2144e-02, + 2DIAGNOSTIC, 6, -3.831788083374e-01, 1.797693134862e+308, 1.0511e+00, 1.2595e-02, + 2DIAGNOSTIC, 7, -3.858061773763e-01, 1.797693134862e+308, 1.0638e+00, 1.2706e-02, + 2DIAGNOSTIC, 8, -3.876935212759e-01, 1.797693134862e+308, 1.0837e+00, 1.9898e-02, + 2DIAGNOSTIC, 9, -3.892103826695e-01, 1.797693134862e+308, 1.0963e+00, 1.2521e-02, + 2DIAGNOSTIC, 10, -3.901514294576e-01, 2.557644091146e-03, 1.1109e+00, 1.4695e-02, + 2DIAGNOSTIC, 11, -3.933657465673e-01, 2.447024968338e-03, 1.1275e+00, 1.6556e-02, + 2DIAGNOSTIC, 12, -3.952783646712e-01, 2.299036329919e-03, 1.1429e+00, 1.5388e-02, + 2DIAGNOSTIC, 13, -4.063426514254e-01, 2.691779365567e-03, 1.1554e+00, 1.2514e-02, + 2DIAGNOSTIC, 14, -4.374444988260e-01, 4.444979949795e-03, 1.1681e+00, 1.2675e-02, + 2DIAGNOSTIC, 15, -4.620563367451e-01, 6.740506287598e-03, 1.1837e+00, 1.5592e-02, + 2DIAGNOSTIC, 16, -4.648658408403e-01, 8.266288375578e-03, 1.1960e+00, 1.2305e-02, + 2DIAGNOSTIC, 17, -5.094238757106e-01, 1.074398711361e-02, 1.2119e+00, 1.5921e-02, + 2DIAGNOSTIC, 18, -5.150037167898e-01, 1.213644061501e-02, 1.2238e+00, 1.1897e-02, + 2DIAGNOSTIC, 19, -5.205956130452e-01, 1.247728227316e-02, 1.2359e+00, 1.2140e-02, + 2DIAGNOSTIC, 20, -5.309386517599e-01, 1.200247073951e-02, 1.2535e+00, 1.7549e-02, + 2DIAGNOSTIC, 21, -5.341442269253e-01, 1.068262608201e-02, 1.2674e+00, 1.3965e-02, + 2DIAGNOSTIC, 22, -5.364296804443e-01, 8.641618501434e-03, 1.2819e+00, 1.4418e-02, + 2DIAGNOSTIC, 23, -5.436022463921e-01, 6.508442034929e-03, 1.2964e+00, 1.4500e-02, + 2DIAGNOSTIC, 24, -5.675819479527e-01, 5.445150916232e-03, 1.3110e+00, 1.4678e-02, + 2DIAGNOSTIC, 25, -5.715759479222e-01, 4.701692928501e-03, 1.3236e+00, 1.2599e-02, + 2DIAGNOSTIC, 26, -5.761585134101e-01, 3.747205178064e-03, 1.3381e+00, 1.4495e-02, + 2DIAGNOSTIC, 27, -5.796295177821e-01, 3.641822494145e-03, 1.3576e+00, 1.9427e-02, + 2DIAGNOSTIC, 28, -5.819486610547e-01, 3.374432750991e-03, 1.3706e+00, 1.3018e-02, + 2DIAGNOSTIC, 29, -5.866228083563e-01, 3.015814351000e-03, 1.3853e+00, 1.4749e-02, + 2DIAGNOSTIC, 30, -5.938690429297e-01, 2.753315125508e-03, 1.4001e+00, 1.4757e-02, + 2DIAGNOSTIC, 31, -5.956364179852e-01, 2.353051815650e-03, 1.4147e+00, 1.4583e-02, + 2DIAGNOSTIC, 32, -5.960873663200e-01, 1.816766759025e-03, 1.4271e+00, 1.2420e-02, + 2DIAGNOSTIC, 33, -5.968631211475e-01, 1.282423323613e-03, 1.4414e+00, 1.4281e-02, + 2DIAGNOSTIC, 34, -6.002558099242e-01, 1.134714987206e-03, 1.4579e+00, 1.6503e-02, + 2DIAGNOSTIC, 35, -6.018940170034e-01, 9.791237937307e-04, 1.4708e+00, 1.2895e-02, + 2DIAGNOSTIC, 36, -6.024392853313e-01, 8.230997323476e-04, 1.4836e+00, 1.2837e-02, + 2DIAGNOSTIC, 37, -6.029017447525e-01, 6.628638173441e-04, 1.4983e+00, 1.4667e-02, + 2DIAGNOSTIC, 38, -6.028012390684e-01, 4.830802843427e-04, 1.5152e+00, 1.6931e-02, + 2DIAGNOSTIC, 39, -6.030496218669e-01, 3.369757534093e-04, 1.5302e+00, 1.5009e-02, + 2DIAGNOSTIC, 40, -6.030951637589e-01, 2.695632325604e-04, 1.5462e+00, 1.6015e-02, + 2DIAGNOSTIC, 41, -6.031285903576e-01, 2.057077038328e-04, 1.5589e+00, 1.2664e-02, + 2DIAGNOSTIC, 42, -6.031573422291e-01, 1.329084103971e-04, 1.5715e+00, 1.2615e-02, + 2DIAGNOSTIC, 43, -6.032832091624e-01, 6.232827176430e-05, 1.5859e+00, 1.4380e-02, + 2DIAGNOSTIC, 44, -6.032400720084e-01, 3.138424638862e-05, 1.6014e+00, 1.5515e-02, + 2DIAGNOSTIC, 45, -6.032101762874e-01, 1.875610692839e-05, 1.6158e+00, 1.4379e-02, + 2DIAGNOSTIC, 46, -6.032364890973e-01, 1.179086139178e-05, 1.6303e+00, 1.4485e-02, + 2DIAGNOSTIC, 47, -6.032826648411e-01, 1.009959282221e-05, 1.6427e+00, 1.2446e-02, + 2DIAGNOSTIC, 48, -6.032890491454e-01, 6.420628866268e-06, 1.6573e+00, 1.4619e-02, + 2DIAGNOSTIC, 49, -6.033189711823e-01, 5.476943699106e-06, 1.6720e+00, 1.4692e-02, + 2DIAGNOSTIC, 50, -6.033691566366e-01, 5.186068475205e-06, 1.6881e+00, 1.6049e-02, + 2DIAGNOSTIC, 51, -6.033574900124e-01, 4.697753374232e-06, 1.7015e+00, 1.3433e-02, + 2DIAGNOSTIC, 52, -6.033114354576e-01, 3.628067112047e-06, 1.7138e+00, 1.2320e-02, + 2DIAGNOSTIC, 53, -6.033134415399e-01, 3.652599339682e-06, 1.7262e+00, 1.2384e-02, + 2DIAGNOSTIC, 54, -6.033142821715e-01, 2.975568290112e-06, 1.7399e+00, 1.3686e-02, + 2DIAGNOSTIC, 55, -6.033318569009e-01, 1.968693755384e-06, 1.7540e+00, 1.4078e-02, + 2DIAGNOSTIC, 56, -6.033503391313e-01, 1.294347881913e-06, 1.7699e+00, 1.5971e-02, + 2DIAGNOSTIC, 57, -6.033847812151e-01, 1.352279350084e-06, 1.7861e+00, 1.6130e-02, + 2DIAGNOSTIC, 58, -6.033715579626e-01, 1.268943249439e-06, 1.8057e+00, 1.9636e-02, + 2DIAGNOSTIC, 59, -6.033718210334e-01, 1.385978278205e-06, 1.8196e+00, 1.3934e-02, + 2DIAGNOSTIC, 60, -6.033552331247e-01, 1.718942706719e-06, 1.8318e+00, 1.2110e-02, + 2DIAGNOSTIC, 61, -6.033387301395e-01, 1.697471771249e-06, 1.8459e+00, 1.4117e-02, + 2DIAGNOSTIC, 62, -6.033222020624e-01, 1.036889526570e-06, 1.8599e+00, 1.4026e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.998057679723e-01, 1.797693134862e+308, 2.2938e+00, 4.3389e-01, + 2DIAGNOSTIC, 2, -5.001475865066e-01, 1.797693134862e+308, 2.3817e+00, 8.7922e-02, + 2DIAGNOSTIC, 3, -5.002379223996e-01, 1.797693134862e+308, 2.4812e+00, 9.9486e-02, + 2DIAGNOSTIC, 4, -5.002433308401e-01, 1.797693134862e+308, 2.5952e+00, 1.1400e-01, + 2DIAGNOSTIC, 5, -5.002430160772e-01, 1.797693134862e+308, 2.6939e+00, 9.8707e-02, + 2DIAGNOSTIC, 6, -5.002392187547e-01, 1.797693134862e+308, 2.7941e+00, 1.0022e-01, + 2DIAGNOSTIC, 7, -5.002386557369e-01, 1.797693134862e+308, 2.8934e+00, 9.9218e-02, + 2DIAGNOSTIC, 8, -5.002349196839e-01, 1.797693134862e+308, 3.0071e+00, 1.1375e-01, + 2DIAGNOSTIC, 9, -5.002322381769e-01, 1.797693134862e+308, 3.0941e+00, 8.7038e-02, + 2DIAGNOSTIC, 10, -5.002331974730e-01, 3.139038694105e-05, 3.1763e+00, 8.2145e-02, + 2DIAGNOSTIC, 11, -5.002316887042e-01, 6.420793844136e-06, 3.2701e+00, 9.3839e-02, + 2DIAGNOSTIC, 12, -5.002338425436e-01, 1.466328284835e-06, 3.3680e+00, 9.7890e-02, + 2DIAGNOSTIC, 13, -5.002325969787e-01, 1.265864557551e-06, 3.4511e+00, 8.3080e-02, + 2DIAGNOSTIC, 14, -5.002328108010e-01, 1.431404694399e-06, 3.5636e+00, 1.1252e-01, + 2DIAGNOSTIC, 15, -5.002391607154e-01, 1.882310022142e-06, 3.6622e+00, 9.8565e-02, + 2DIAGNOSTIC, 16, -5.002371797070e-01, 2.084352716467e-06, 3.7485e+00, 8.6333e-02, + 2DIAGNOSTIC, 17, -5.002345771398e-01, 2.154700583366e-06, 3.8504e+00, 1.0189e-01, + 2DIAGNOSTIC, 18, -5.002360640749e-01, 2.127312634381e-06, 3.9382e+00, 8.7843e-02, + 2DIAGNOSTIC, 19, -5.002374276098e-01, 2.025859120146e-06, 4.0508e+00, 1.1252e-01, + 2DIAGNOSTIC, 20, -5.002338387877e-01, 1.823918673288e-06, 4.1377e+00, 8.6933e-02, + 2DIAGNOSTIC, 21, -5.002337236694e-01, 1.577954334787e-06, 4.2379e+00, 1.0016e-01, + 2DIAGNOSTIC, 22, -5.002332438565e-01, 1.396079998967e-06, 4.3336e+00, 9.5753e-02, + 2DIAGNOSTIC, 23, -5.002307242553e-01, 1.140976483030e-06, 4.4130e+00, 7.9405e-02, + 2DIAGNOSTIC, 24, -5.002337200842e-01, 1.001096423224e-06, 4.5081e+00, 9.5119e-02, + 2DIAGNOSTIC, 25, -5.002371218216e-01, 1.124072586539e-06, 4.6039e+00, 9.5721e-02, + 2DIAGNOSTIC, 26, -5.002390517076e-01, 1.251075627505e-06, 4.6898e+00, 8.5988e-02, + 2DIAGNOSTIC, 27, -5.002382135503e-01, 1.292994207210e-06, 4.7877e+00, 9.7841e-02, + 2DIAGNOSTIC, 28, -5.002358926146e-01, 1.305212129231e-06, 4.8979e+00, 1.1020e-01, + 2DIAGNOSTIC, 29, -5.002353777996e-01, 1.319745726140e-06, 5.0028e+00, 1.0489e-01, + 2DIAGNOSTIC, 30, -5.002344648811e-01, 1.224212244209e-06, 5.0918e+00, 8.8975e-02, + 2DIAGNOSTIC, 31, -5.002340663910e-01, 1.109409095097e-06, 5.1872e+00, 9.5470e-02, + Elapsed time (stage 0): 5.3380e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.924056977014e-01, 1.797693134862e+308, 2.1563e-01, 2.1563e-01, + 2DIAGNOSTIC, 2, -7.945502365383e-01, 1.797693134862e+308, 2.1695e-01, 1.3139e-03, + 2DIAGNOSTIC, 3, -7.994270402790e-01, 1.797693134862e+308, 2.1824e-01, 1.2958e-03, + 2DIAGNOSTIC, 4, -8.072393426723e-01, 1.797693134862e+308, 2.1952e-01, 1.2729e-03, + 2DIAGNOSTIC, 5, -8.180778101041e-01, 1.797693134862e+308, 2.2087e-01, 1.3540e-03, + 2DIAGNOSTIC, 6, -8.296005351073e-01, 1.797693134862e+308, 2.2220e-01, 1.3270e-03, + 2DIAGNOSTIC, 7, -8.469875161987e-01, 1.797693134862e+308, 2.2351e-01, 1.3180e-03, + 2DIAGNOSTIC, 8, -8.665094250210e-01, 1.797693134862e+308, 2.2575e-01, 2.2402e-03, + 2DIAGNOSTIC, 9, -8.735708120663e-01, 1.797693134862e+308, 2.2709e-01, 1.3402e-03, + 2DIAGNOSTIC, 10, -8.767827160976e-01, 7.564995652126e-03, 2.2861e-01, 1.5109e-03, + 2DIAGNOSTIC, 11, -8.876774400747e-01, 7.199050873356e-03, 2.3039e-01, 1.7869e-03, + 2DIAGNOSTIC, 12, -8.909437558288e-01, 6.393822879967e-03, 2.3205e-01, 1.6592e-03, + 2DIAGNOSTIC, 13, -8.955481828754e-01, 5.382090461237e-03, 2.3423e-01, 2.1770e-03, + 2DIAGNOSTIC, 14, -8.964176383105e-01, 4.243735772722e-03, 2.3591e-01, 1.6840e-03, + 2DIAGNOSTIC, 15, -8.986149455404e-01, 3.172503723266e-03, 2.3735e-01, 1.4360e-03, + 2DIAGNOSTIC, 16, -9.003868214188e-01, 2.221481831617e-03, 2.3915e-01, 1.8051e-03, + 2DIAGNOSTIC, 17, -9.001172034648e-01, 1.507448795696e-03, 2.4095e-01, 1.7920e-03, + 2DIAGNOSTIC, 18, -9.019890864617e-01, 1.130297775668e-03, 2.4251e-01, 1.5671e-03, + 2DIAGNOSTIC, 19, -9.050935703171e-01, 8.670433865106e-04, 2.4468e-01, 2.1710e-03, + 2DIAGNOSTIC, 20, -9.059219369833e-01, 6.123541638038e-04, 2.4624e-01, 1.5600e-03, + 2DIAGNOSTIC, 21, -9.059243096723e-01, 4.962307528163e-04, 2.4802e-01, 1.7719e-03, + 2DIAGNOSTIC, 22, -9.062319246767e-01, 3.976968428438e-04, 2.4975e-01, 1.7331e-03, + 2DIAGNOSTIC, 23, -9.051075811997e-01, 3.204485763703e-04, 2.5122e-01, 1.4751e-03, + 2DIAGNOSTIC, 24, -9.055408554747e-01, 2.367482512517e-04, 2.5279e-01, 1.5619e-03, + 2DIAGNOSTIC, 25, -9.053676866268e-01, 1.633866501182e-04, 2.5452e-01, 1.7331e-03, + 2DIAGNOSTIC, 26, -9.049847550239e-01, 9.888251329793e-05, 2.5618e-01, 1.6608e-03, + 2DIAGNOSTIC, 27, -9.052358259221e-01, 3.006099932713e-05, 2.5777e-01, 1.5929e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.809847714050e-01, 1.797693134862e+308, 4.6952e-01, 2.1175e-01, + 2DIAGNOSTIC, 2, -7.819917168135e-01, 1.797693134862e+308, 4.7196e-01, 2.4381e-03, + 2DIAGNOSTIC, 3, -7.840962828528e-01, 1.797693134862e+308, 4.7402e-01, 2.0649e-03, + 2DIAGNOSTIC, 4, -7.864017374781e-01, 1.797693134862e+308, 4.7596e-01, 1.9341e-03, + 2DIAGNOSTIC, 5, -7.895838711976e-01, 1.797693134862e+308, 4.7796e-01, 2.0020e-03, + 2DIAGNOSTIC, 6, -7.956690747069e-01, 1.797693134862e+308, 4.8003e-01, 2.0649e-03, + 2DIAGNOSTIC, 7, -8.052262985121e-01, 1.797693134862e+308, 4.8239e-01, 2.3661e-03, + 2DIAGNOSTIC, 8, -8.068146616461e-01, 1.797693134862e+308, 4.8475e-01, 2.3620e-03, + 2DIAGNOSTIC, 9, -8.074605655044e-01, 1.797693134862e+308, 4.8709e-01, 2.3320e-03, + 2DIAGNOSTIC, 10, -8.079874121509e-01, 2.685567732731e-03, 4.9057e-01, 3.4888e-03, + 2DIAGNOSTIC, 11, -8.083751139967e-01, 2.329407698277e-03, 4.9312e-01, 2.5470e-03, + 2DIAGNOSTIC, 12, -8.093337350031e-01, 1.878459148917e-03, 4.9540e-01, 2.2800e-03, + 2DIAGNOSTIC, 13, -8.096876894686e-01, 1.395811368602e-03, 4.9795e-01, 2.5530e-03, + 2DIAGNOSTIC, 14, -8.100483388992e-01, 9.275814019433e-04, 5.0053e-01, 2.5790e-03, + 2DIAGNOSTIC, 15, -8.099475509102e-01, 5.103609688163e-04, 5.0310e-01, 2.5618e-03, + 2DIAGNOSTIC, 16, -8.098531197289e-01, 2.269378329405e-04, 5.0537e-01, 2.2779e-03, + 2DIAGNOSTIC, 17, -8.098052981034e-01, 1.542249575432e-04, 5.0826e-01, 2.8880e-03, + 2DIAGNOSTIC, 18, -8.098712303219e-01, 1.078526655443e-04, 5.1085e-01, 2.5930e-03, + 2DIAGNOSTIC, 19, -8.097280229048e-01, 6.585884314593e-05, 5.1344e-01, 2.5811e-03, + 2DIAGNOSTIC, 20, -8.095899917267e-01, 2.922827621603e-05, 5.1571e-01, 2.2762e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.794498779824e-01, 1.797693134862e+308, 7.5435e-01, 2.3864e-01, + 2DIAGNOSTIC, 2, -6.806223565207e-01, 1.797693134862e+308, 7.6799e-01, 1.3635e-02, + 2DIAGNOSTIC, 3, -6.820578648403e-01, 1.797693134862e+308, 7.8149e-01, 1.3503e-02, + 2DIAGNOSTIC, 4, -6.833657926486e-01, 1.797693134862e+308, 7.9499e-01, 1.3496e-02, + 2DIAGNOSTIC, 5, -6.850040973907e-01, 1.797693134862e+308, 8.0860e-01, 1.3619e-02, + 2DIAGNOSTIC, 6, -6.872378022419e-01, 1.797693134862e+308, 8.2412e-01, 1.5513e-02, + 2DIAGNOSTIC, 7, -6.900341679286e-01, 1.797693134862e+308, 8.5613e-01, 3.2015e-02, + 2DIAGNOSTIC, 8, -6.900743756260e-01, 1.797693134862e+308, 8.7036e-01, 1.4228e-02, + 2DIAGNOSTIC, 9, -6.901085016203e-01, 1.797693134862e+308, 8.8347e-01, 1.3108e-02, + 2DIAGNOSTIC, 10, -6.901504652003e-01, 1.167619065003e-03, 8.9703e-01, 1.3563e-02, + 2DIAGNOSTIC, 11, -6.901892701629e-01, 9.140793386391e-04, 9.1223e-01, 1.5199e-02, + 2DIAGNOSTIC, 12, -6.902650569675e-01, 6.625395693552e-04, 9.2554e-01, 1.3308e-02, + 2DIAGNOSTIC, 13, -6.902404989019e-01, 4.354501687182e-04, 9.3881e-01, 1.3271e-02, + 2DIAGNOSTIC, 14, -6.903384032142e-01, 2.439681053337e-04, 9.5416e-01, 1.5348e-02, + 2DIAGNOSTIC, 15, -6.903825508588e-01, 1.015567566356e-04, 9.6756e-01, 1.3402e-02, + 2DIAGNOSTIC, 16, -6.904480208986e-01, 2.522522216568e-05, 9.8105e-01, 1.3490e-02, + 2DIAGNOSTIC, 17, -6.905493030676e-01, 2.619021080166e-05, 9.9635e-01, 1.5298e-02, + 2DIAGNOSTIC, 18, -6.905893841082e-01, 2.661138428307e-05, 1.0118e+00, 1.5467e-02, + 2DIAGNOSTIC, 19, -6.906253126239e-01, 2.620817078752e-05, 1.0297e+00, 1.7910e-02, + 2DIAGNOSTIC, 20, -6.906239873632e-01, 2.438826438269e-05, 1.0479e+00, 1.8210e-02, + 2DIAGNOSTIC, 21, -6.906186301101e-01, 2.124960715705e-05, 1.0662e+00, 1.8286e-02, + 2DIAGNOSTIC, 22, -6.906068569611e-01, 1.777973608798e-05, 1.0829e+00, 1.6661e-02, + 2DIAGNOSTIC, 23, -6.905773143546e-01, 1.207537694408e-05, 1.0973e+00, 1.4415e-02, + 2DIAGNOSTIC, 24, -6.905721908665e-01, 7.459662837987e-06, 1.1117e+00, 1.4427e-02, + 2DIAGNOSTIC, 25, -6.906137139604e-01, 4.044793325796e-06, 1.1272e+00, 1.5500e-02, + 2DIAGNOSTIC, 26, -6.906499249238e-01, 2.192467208888e-06, 1.1487e+00, 2.1476e-02, + 2DIAGNOSTIC, 27, -6.906612251476e-01, 2.091667196523e-06, 1.1650e+00, 1.6275e-02, + 2DIAGNOSTIC, 28, -6.906387200828e-01, 2.174449419357e-06, 1.1814e+00, 1.6395e-02, + 2DIAGNOSTIC, 29, -6.906408157036e-01, 2.711631272023e-06, 1.1976e+00, 1.6222e-02, + 2DIAGNOSTIC, 30, -6.906204968286e-01, 2.743173860523e-06, 1.2130e+00, 1.5372e-02, + 2DIAGNOSTIC, 31, -6.905494681217e-01, 1.588329428849e-06, 1.2264e+00, 1.3396e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.740927949921e-01, 1.797693134862e+308, 1.6578e+00, 4.3145e-01, + 2DIAGNOSTIC, 2, -5.748744302925e-01, 1.797693134862e+308, 1.7558e+00, 9.7975e-02, + 2DIAGNOSTIC, 3, -5.757845805170e-01, 1.797693134862e+308, 1.8559e+00, 1.0015e-01, + 2DIAGNOSTIC, 4, -5.764704679908e-01, 1.797693134862e+308, 1.9532e+00, 9.7219e-02, + 2DIAGNOSTIC, 5, -5.771200606208e-01, 1.797693134862e+308, 2.0516e+00, 9.8484e-02, + 2DIAGNOSTIC, 6, -5.780650043437e-01, 1.797693134862e+308, 2.1646e+00, 1.1298e-01, + 2DIAGNOSTIC, 7, -5.802360783276e-01, 1.797693134862e+308, 2.3226e+00, 1.5799e-01, + 2DIAGNOSTIC, 8, -5.806474628290e-01, 1.797693134862e+308, 2.4242e+00, 1.0155e-01, + 2DIAGNOSTIC, 9, -5.809333135165e-01, 1.797693134862e+308, 2.5386e+00, 1.1442e-01, + 2DIAGNOSTIC, 10, -5.811206859490e-01, 8.711175835489e-04, 2.6649e+00, 1.2626e-01, + 2DIAGNOSTIC, 11, -5.812506119390e-01, 7.257211716904e-04, 2.8469e+00, 1.8209e-01, + 2DIAGNOSTIC, 12, -5.812787876676e-01, 5.711703129525e-04, 2.9425e+00, 9.5531e-02, + 2DIAGNOSTIC, 13, -5.813547225677e-01, 4.261061101536e-04, 3.0406e+00, 9.8145e-02, + 2DIAGNOSTIC, 14, -5.814580774866e-01, 2.918097231934e-04, 3.1387e+00, 9.8127e-02, + 2DIAGNOSTIC, 15, -5.815774843217e-01, 1.742108357725e-04, 3.2374e+00, 9.8689e-02, + 2DIAGNOSTIC, 16, -5.816853492910e-01, 8.614474983468e-05, 3.3344e+00, 9.6998e-02, + 2DIAGNOSTIC, 17, -5.817500706356e-01, 6.506092944697e-05, 3.4311e+00, 9.6628e-02, + 2DIAGNOSTIC, 18, -5.818248643559e-01, 5.362445857373e-05, 3.5245e+00, 9.3391e-02, + 2DIAGNOSTIC, 19, -5.819778757151e-01, 4.977686358189e-05, 3.6198e+00, 9.5385e-02, + 2DIAGNOSTIC, 20, -5.826275258483e-01, 6.217788677321e-05, 3.7132e+00, 9.3323e-02, + 2DIAGNOSTIC, 21, -5.831441640697e-01, 8.245586550779e-05, 3.8811e+00, 1.6798e-01, + 2DIAGNOSTIC, 22, -5.831808952732e-01, 9.465478394233e-05, 3.9914e+00, 1.1025e-01, + 2DIAGNOSTIC, 23, -5.832109887587e-01, 9.962342281131e-05, 4.0860e+00, 9.4623e-02, + 2DIAGNOSTIC, 24, -5.832393933295e-01, 9.769095472630e-05, 4.1845e+00, 9.8486e-02, + 2DIAGNOSTIC, 25, -5.833120504769e-01, 9.034571255843e-05, 4.2824e+00, 9.7929e-02, + 2DIAGNOSTIC, 26, -5.837099789076e-01, 8.450584097530e-05, 4.4119e+00, 1.2946e-01, + 2DIAGNOSTIC, 27, -5.846593222680e-01, 8.958929828665e-05, 4.5412e+00, 1.2932e-01, + 2DIAGNOSTIC, 28, -5.847542956129e-01, 8.876100582522e-05, 4.7004e+00, 1.5921e-01, + 2DIAGNOSTIC, 29, -5.847559483563e-01, 8.236867343558e-05, 4.7988e+00, 9.8381e-02, + 2DIAGNOSTIC, 30, -5.848136494847e-01, 8.025082536330e-05, 4.8984e+00, 9.9613e-02, + 2DIAGNOSTIC, 31, -5.848510511865e-01, 7.934319035702e-05, 5.0114e+00, 1.1295e-01, + 2DIAGNOSTIC, 32, -5.848661042173e-01, 7.159637642469e-05, 5.1240e+00, 1.1263e-01, + 2DIAGNOSTIC, 33, -5.848612645723e-01, 5.803546392807e-05, 5.2372e+00, 1.1319e-01, + 2DIAGNOSTIC, 34, -5.848673822657e-01, 4.062233048333e-05, 5.3349e+00, 9.7704e-02, + 2DIAGNOSTIC, 35, -5.848806843914e-01, 2.164630524545e-05, 5.4472e+00, 1.1233e-01, + 2DIAGNOSTIC, 36, -5.848909034616e-01, 6.926251258740e-06, 5.5749e+00, 1.2768e-01, + 2DIAGNOSTIC, 37, -5.848928761656e-01, 4.961375836315e-06, 5.7191e+00, 1.4421e-01, + 2DIAGNOSTIC, 38, -5.848893089074e-01, 3.904877324511e-06, 5.8257e+00, 1.0662e-01, + 2DIAGNOSTIC, 39, -5.848870298866e-01, 2.593014799799e-06, 5.9653e+00, 1.3962e-01, + 2DIAGNOSTIC, 40, -5.848856210790e-01, 1.850417964876e-06, 6.0789e+00, 1.1356e-01, + 2DIAGNOSTIC, 41, -5.848840245862e-01, 1.462318520568e-06, 6.1906e+00, 1.1169e-01, + 2DIAGNOSTIC, 42, -5.848806351493e-01, 1.167369461937e-06, 6.3052e+00, 1.1456e-01, + Elapsed time (stage 1): 6.4426e+00 + + +Total elapsed time: 1.1783e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:48:04 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:48:05 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5636137614f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 61.0027, -119.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x563613766fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f8ec8b02010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x563613762850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 61.0027, -119.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56361375ff30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f8ec5443010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x563613779b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 61.0027, -119.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x563613766550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f8ec1d84010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x56361377ed70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 61.0027, -119.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56361377cc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f8ebe6c5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x563613780f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 61.0027, -119.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56361377f3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f8ebb006010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x563613781540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 61.0027, -119.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5636137814d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f8eb7947010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.884072991055e-01, 1.797693134862e+308, 2.3478e-01, 2.3477e-01, + 2DIAGNOSTIC, 2, -5.920994404289e-01, 1.797693134862e+308, 2.3728e-01, 2.5010e-03, + 2DIAGNOSTIC, 3, -5.981833624861e-01, 1.797693134862e+308, 2.3949e-01, 2.2149e-03, + 2DIAGNOSTIC, 4, -6.073828113237e-01, 1.797693134862e+308, 2.4211e-01, 2.6169e-03, + 2DIAGNOSTIC, 5, -6.210812163253e-01, 1.797693134862e+308, 2.4481e-01, 2.7001e-03, + 2DIAGNOSTIC, 6, -6.366497188258e-01, 1.797693134862e+308, 2.4743e-01, 2.6181e-03, + 2DIAGNOSTIC, 7, -6.434380444677e-01, 1.797693134862e+308, 2.4982e-01, 2.3980e-03, + 2DIAGNOSTIC, 8, -6.461167366257e-01, 1.797693134862e+308, 2.5303e-01, 3.2079e-03, + 2DIAGNOSTIC, 9, -6.462339020703e-01, 1.797693134862e+308, 2.5535e-01, 2.3198e-03, + 2DIAGNOSTIC, 10, -6.466098335638e-01, 7.240794464180e-03, 2.5761e-01, 2.2540e-03, + 2DIAGNOSTIC, 11, -6.468206617378e-01, 5.672810581980e-03, 2.6006e-01, 2.4581e-03, + 2DIAGNOSTIC, 12, -6.468282266597e-01, 4.006638637972e-03, 2.6221e-01, 2.1470e-03, + 2DIAGNOSTIC, 13, -6.468950850738e-01, 2.461032437893e-03, 2.6433e-01, 2.1150e-03, + 2DIAGNOSTIC, 14, -6.471723091088e-01, 1.221607757820e-03, 2.6651e-01, 2.1791e-03, + 2DIAGNOSTIC, 15, -6.475567943010e-01, 4.535903313475e-04, 2.6871e-01, 2.2061e-03, + 2DIAGNOSTIC, 16, -6.480374419576e-01, 1.890078477826e-04, 2.7087e-01, 2.1570e-03, + 2DIAGNOSTIC, 17, -6.493417738704e-01, 1.509180259703e-04, 2.7356e-01, 2.6929e-03, + 2DIAGNOSTIC, 18, -6.500278914227e-01, 1.866654157566e-04, 2.7625e-01, 2.6901e-03, + 2DIAGNOSTIC, 19, -6.497449742384e-01, 1.973012078086e-04, 2.8321e-01, 6.9571e-03, + 2DIAGNOSTIC, 20, -6.497449482578e-01, 1.976264136263e-04, 2.8539e-01, 2.1818e-03, + 2DIAGNOSTIC, 21, -6.497449936517e-01, 1.841336973131e-04, 2.8752e-01, 2.1279e-03, + 2DIAGNOSTIC, 22, -6.497450703972e-01, 1.545435569064e-04, 2.8967e-01, 2.1570e-03, + 2DIAGNOSTIC, 23, -6.497452001107e-01, 1.143558877870e-04, 2.9180e-01, 2.1260e-03, + 2DIAGNOSTIC, 24, -6.497454192772e-01, 7.249078280953e-05, 2.9399e-01, 2.1880e-03, + 2DIAGNOSTIC, 25, -6.497457895652e-01, 3.446718894141e-05, 2.9615e-01, 2.1570e-03, + 2DIAGNOSTIC, 26, -6.497464145476e-01, 3.959991805066e-06, 2.9834e-01, 2.1901e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.530012392191e-01, 1.797693134862e+308, 5.3653e-01, 2.3820e-01, + 2DIAGNOSTIC, 2, -5.538513183629e-01, 1.797693134862e+308, 5.5026e-01, 1.3731e-02, + 2DIAGNOSTIC, 3, -5.544151323462e-01, 1.797693134862e+308, 5.6741e-01, 1.7147e-02, + 2DIAGNOSTIC, 4, -5.545665835266e-01, 1.797693134862e+308, 5.8611e-01, 1.8701e-02, + 2DIAGNOSTIC, 5, -5.545852057104e-01, 1.797693134862e+308, 6.0116e-01, 1.5043e-02, + 2DIAGNOSTIC, 6, -5.545722807806e-01, 1.797693134862e+308, 6.1563e-01, 1.4476e-02, + 2DIAGNOSTIC, 7, -5.545759714348e-01, 1.797693134862e+308, 6.3003e-01, 1.4403e-02, + 2DIAGNOSTIC, 8, -5.545725912826e-01, 1.797693134862e+308, 6.4506e-01, 1.5025e-02, + 2DIAGNOSTIC, 9, -5.545770159278e-01, 1.797693134862e+308, 6.5854e-01, 1.3482e-02, + 2DIAGNOSTIC, 10, -5.546253572858e-01, 1.247370001816e-04, 6.7450e-01, 1.5959e-02, + 2DIAGNOSTIC, 11, -5.546176973019e-01, 4.726614322931e-05, 6.9033e-01, 1.5833e-02, + 2DIAGNOSTIC, 12, -5.545977285386e-01, 1.363546338314e-05, 7.0406e-01, 1.3726e-02, + 2DIAGNOSTIC, 13, -5.546103803814e-01, 6.801772144113e-06, 7.1848e-01, 1.4416e-02, + 2DIAGNOSTIC, 14, -5.546236519860e-01, 6.522167991893e-06, 7.3445e-01, 1.5977e-02, + 2DIAGNOSTIC, 15, -5.546430178367e-01, 7.156099565128e-06, 7.5012e-01, 1.5667e-02, + 2DIAGNOSTIC, 16, -5.546457805561e-01, 6.915826068515e-06, 7.6957e-01, 1.9452e-02, + 2DIAGNOSTIC, 17, -5.546423485172e-01, 6.307121126585e-06, 7.8603e-01, 1.6461e-02, + 2DIAGNOSTIC, 18, -5.546406567228e-01, 5.228706338005e-06, 7.9991e-01, 1.3874e-02, + 2DIAGNOSTIC, 19, -5.546197830110e-01, 3.442839696589e-06, 8.1585e-01, 1.5946e-02, + 2DIAGNOSTIC, 20, -5.546478197447e-01, 3.636897095691e-06, 8.2964e-01, 1.3789e-02, + 2DIAGNOSTIC, 21, -5.546663875283e-01, 3.882092912022e-06, 8.4357e-01, 1.3924e-02, + 2DIAGNOSTIC, 22, -5.546795721859e-01, 3.717385069393e-06, 8.5985e-01, 1.6288e-02, + 2DIAGNOSTIC, 23, -5.546914768912e-01, 3.908907048898e-06, 8.7781e-01, 1.7960e-02, + 2DIAGNOSTIC, 24, -5.546833605819e-01, 3.953473409597e-06, 8.9358e-01, 1.5771e-02, + 2DIAGNOSTIC, 25, -5.546852942340e-01, 4.183944262756e-06, 9.0776e-01, 1.4177e-02, + 2DIAGNOSTIC, 26, -5.546835021456e-01, 4.128419790486e-06, 9.2354e-01, 1.5776e-02, + 2DIAGNOSTIC, 27, -5.547031663102e-01, 4.108850830742e-06, 9.3914e-01, 1.5603e-02, + 2DIAGNOSTIC, 28, -5.546687892923e-01, 3.162667615041e-06, 9.5319e-01, 1.4045e-02, + 2DIAGNOSTIC, 29, -5.546643607635e-01, 1.659315083752e-06, 9.6712e-01, 1.3936e-02, + 2DIAGNOSTIC, 30, -5.546862492895e-01, 1.053521221615e-06, 9.8284e-01, 1.5719e-02, + 2DIAGNOSTIC, 31, -5.547313329806e-01, 1.512357904153e-06, 9.9865e-01, 1.5807e-02, + 2DIAGNOSTIC, 32, -5.547289330235e-01, 2.041944214576e-06, 1.0144e+00, 1.5773e-02, + 2DIAGNOSTIC, 33, -5.546829617091e-01, 1.937712609507e-06, 1.0285e+00, 1.4075e-02, + 2DIAGNOSTIC, 34, -5.547028629172e-01, 1.960770412448e-06, 1.0443e+00, 1.5832e-02, + 2DIAGNOSTIC, 35, -5.546956142036e-01, 1.778651870777e-06, 1.0599e+00, 1.5613e-02, + 2DIAGNOSTIC, 36, -5.547217800730e-01, 1.839788604071e-06, 1.0756e+00, 1.5673e-02, + 2DIAGNOSTIC, 37, -5.547276258871e-01, 2.171361947568e-06, 1.0919e+00, 1.6320e-02, + 2DIAGNOSTIC, 38, -5.547512294128e-01, 2.240426387561e-06, 1.1122e+00, 2.0307e-02, + 2DIAGNOSTIC, 39, -5.547432326129e-01, 2.003216899488e-06, 1.1274e+00, 1.5200e-02, + 2DIAGNOSTIC, 40, -5.547413009285e-01, 1.900909272327e-06, 1.1424e+00, 1.4989e-02, + 2DIAGNOSTIC, 41, -5.547422231660e-01, 2.269970120691e-06, 1.1561e+00, 1.3665e-02, + 2DIAGNOSTIC, 42, -5.547301419184e-01, 2.314008624944e-06, 1.1697e+00, 1.3652e-02, + 2DIAGNOSTIC, 43, -5.547327153996e-01, 1.686564798112e-06, 1.1857e+00, 1.5913e-02, + 2DIAGNOSTIC, 44, -5.547347794257e-01, 1.258432063174e-06, 1.2009e+00, 1.5241e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.598987234389e-01, 1.797693134862e+308, 1.5632e+00, 3.6228e-01, + 2DIAGNOSTIC, 2, -4.602368303066e-01, 1.797693134862e+308, 1.6569e+00, 9.3762e-02, + 2DIAGNOSTIC, 3, -4.603324277160e-01, 1.797693134862e+308, 1.7510e+00, 9.4081e-02, + 2DIAGNOSTIC, 4, -4.603848984859e-01, 1.797693134862e+308, 1.8447e+00, 9.3682e-02, + 2DIAGNOSTIC, 5, -4.604306554345e-01, 1.797693134862e+308, 1.9383e+00, 9.3642e-02, + 2DIAGNOSTIC, 6, -4.610828489576e-01, 1.797693134862e+308, 2.0861e+00, 1.4774e-01, + 2DIAGNOSTIC, 7, -4.612281718821e-01, 1.797693134862e+308, 2.2296e+00, 1.4350e-01, + 2DIAGNOSTIC, 8, -4.612262395472e-01, 1.797693134862e+308, 2.3358e+00, 1.0625e-01, + 2DIAGNOSTIC, 9, -4.612253189607e-01, 1.797693134862e+308, 2.4822e+00, 1.4639e-01, + 2DIAGNOSTIC, 10, -4.612254590318e-01, 2.079398098966e-04, 2.6019e+00, 1.1970e-01, + 2DIAGNOSTIC, 11, -4.612247817500e-01, 1.572965580847e-04, 2.7084e+00, 1.0647e-01, + 2DIAGNOSTIC, 12, -4.612225057295e-01, 1.181976316854e-04, 2.8002e+00, 9.1775e-02, + 2DIAGNOSTIC, 13, -4.612218902295e-01, 7.963098776438e-05, 2.9088e+00, 1.0860e-01, + 2DIAGNOSTIC, 14, -4.612227728406e-01, 4.231140588797e-05, 3.0040e+00, 9.5242e-02, + 2DIAGNOSTIC, 15, -4.612215481777e-01, 7.446109655168e-06, 3.1109e+00, 1.0687e-01, + 2DIAGNOSTIC, 16, -4.612203212782e-01, 1.381374351433e-06, 3.2169e+00, 1.0601e-01, + 2DIAGNOSTIC, 17, -4.612189209920e-01, 1.311252656774e-06, 3.3376e+00, 1.2072e-01, + 2DIAGNOSTIC, 18, -4.612167299216e-01, 1.160818615793e-06, 3.4503e+00, 1.1271e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.965903147827e-01, 1.797693134862e+308, 4.6919e+00, 1.2416e+00, + 2DIAGNOSTIC, 2, -3.967574062270e-01, 1.797693134862e+308, 5.2711e+00, 5.7920e-01, + 2DIAGNOSTIC, 3, -3.968430100656e-01, 1.797693134862e+308, 5.9214e+00, 6.5028e-01, + 2DIAGNOSTIC, 4, -3.968874720636e-01, 1.797693134862e+308, 7.0290e+00, 1.1076e+00, + 2DIAGNOSTIC, 5, -3.968859859222e-01, 1.797693134862e+308, 7.9356e+00, 9.0652e-01, + 2DIAGNOSTIC, 6, -3.968862791381e-01, 1.797693134862e+308, 8.5275e+00, 5.9192e-01, + 2DIAGNOSTIC, 7, -3.968862936155e-01, 1.797693134862e+308, 9.0843e+00, 5.5684e-01, + 2DIAGNOSTIC, 8, -3.968860208401e-01, 1.797693134862e+308, 9.6378e+00, 5.5346e-01, + 2DIAGNOSTIC, 9, -3.968860809634e-01, 1.797693134862e+308, 1.0225e+01, 5.8728e-01, + 2DIAGNOSTIC, 10, -3.968856290926e-01, 3.450855790620e-05, 1.0849e+01, 6.2379e-01, + 2DIAGNOSTIC, 11, -3.968859267771e-01, 1.362112064411e-05, 1.1628e+01, 7.7887e-01, + 2DIAGNOSTIC, 12, -3.968859273673e-01, 5.108705197460e-06, 1.2360e+01, 7.3229e-01, + 2DIAGNOSTIC, 13, -3.968857189494e-01, 2.317572627419e-06, 1.3020e+01, 6.6020e-01, + 2DIAGNOSTIC, 14, -3.968856262639e-01, 2.209673732462e-06, 1.3577e+01, 5.5646e-01, + 2DIAGNOSTIC, 15, -3.968855687666e-01, 2.047884242462e-06, 1.4164e+01, 5.8783e-01, + 2DIAGNOSTIC, 16, -3.968853841683e-01, 1.917471794677e-06, 1.4776e+01, 6.1112e-01, + 2DIAGNOSTIC, 17, -3.968853067788e-01, 1.806434829214e-06, 1.5330e+01, 5.5424e-01, + 2DIAGNOSTIC, 18, -3.968854182968e-01, 1.707336035342e-06, 1.6023e+01, 6.9310e-01, + 2DIAGNOSTIC, 19, -3.968854627960e-01, 1.628624253854e-06, 1.6643e+01, 6.1967e-01, + 2DIAGNOSTIC, 20, -3.968853723646e-01, 1.542213380300e-06, 1.7291e+01, 6.4838e-01, + 2DIAGNOSTIC, 21, -3.968851384887e-01, 1.470869470263e-06, 1.7930e+01, 6.3887e-01, + 2DIAGNOSTIC, 22, -3.968850418302e-01, 1.407375173054e-06, 1.8479e+01, 5.4916e-01, + 2DIAGNOSTIC, 23, -3.968849775204e-01, 1.344387923846e-06, 1.9019e+01, 5.4025e-01, + 2DIAGNOSTIC, 24, -3.968851109870e-01, 1.291322963240e-06, 1.9634e+01, 6.1422e-01, + 2DIAGNOSTIC, 25, -3.968851265900e-01, 1.244574898612e-06, 2.0265e+01, 6.3138e-01, + 2DIAGNOSTIC, 26, -3.968850289478e-01, 1.196520699610e-06, 2.0900e+01, 6.3558e-01, + 2DIAGNOSTIC, 27, -3.968850075590e-01, 1.152048689460e-06, 2.1511e+01, 6.1095e-01, + 2DIAGNOSTIC, 28, -3.968848947388e-01, 1.113044506722e-06, 2.2079e+01, 5.6755e-01, + 2DIAGNOSTIC, 29, -3.968853318101e-01, 1.090739055569e-06, 2.2736e+01, 6.5656e-01, + 2DIAGNOSTIC, 30, -3.968853782298e-01, 1.069214750703e-06, 2.3376e+01, 6.4038e-01, + 2DIAGNOSTIC, 31, -3.968851155882e-01, 1.036955730636e-06, 2.4016e+01, 6.4039e-01, + 2DIAGNOSTIC, 32, -3.968850283462e-01, 1.002023791913e-06, 2.4683e+01, 6.6690e-01, + Elapsed time (stage 0): 2.5053e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.284591350135e-01, 1.797693134862e+308, 2.0340e-01, 2.0340e-01, + 2DIAGNOSTIC, 2, -6.303795620054e-01, 1.797693134862e+308, 2.0560e-01, 2.2051e-03, + 2DIAGNOSTIC, 3, -6.326893948567e-01, 1.797693134862e+308, 2.0781e-01, 2.2070e-03, + 2DIAGNOSTIC, 4, -6.352274666239e-01, 1.797693134862e+308, 2.0998e-01, 2.1708e-03, + 2DIAGNOSTIC, 5, -6.373873054186e-01, 1.797693134862e+308, 2.1221e-01, 2.2361e-03, + 2DIAGNOSTIC, 6, -6.392785988291e-01, 1.797693134862e+308, 2.1461e-01, 2.3901e-03, + 2DIAGNOSTIC, 7, -6.411480893694e-01, 1.797693134862e+308, 2.1728e-01, 2.6760e-03, + 2DIAGNOSTIC, 8, -6.421834797224e-01, 1.797693134862e+308, 2.2052e-01, 3.2392e-03, + 2DIAGNOSTIC, 9, -6.424092623199e-01, 1.797693134862e+308, 2.2287e-01, 2.3491e-03, + 2DIAGNOSTIC, 10, -6.432542248351e-01, 1.566272209814e-03, 2.2585e-01, 2.9821e-03, + 2DIAGNOSTIC, 11, -6.434275431773e-01, 1.212835354382e-03, 2.2855e-01, 2.7020e-03, + 2DIAGNOSTIC, 12, -6.436100899174e-01, 8.871232042015e-04, 2.3126e-01, 2.7089e-03, + 2DIAGNOSTIC, 13, -6.437940267957e-01, 6.163985008830e-04, 2.3397e-01, 2.7089e-03, + 2DIAGNOSTIC, 14, -6.445671004395e-01, 4.334184006951e-04, 2.3732e-01, 3.3531e-03, + 2DIAGNOSTIC, 15, -6.450990804279e-01, 3.140224114524e-04, 2.4011e-01, 2.7819e-03, + 2DIAGNOSTIC, 16, -6.450700472806e-01, 2.314768086974e-04, 2.4320e-01, 3.0951e-03, + 2DIAGNOSTIC, 17, -6.455700331399e-01, 1.995281885200e-04, 2.4603e-01, 2.8238e-03, + 2DIAGNOSTIC, 18, -6.457881363852e-01, 1.836530550576e-04, 2.4860e-01, 2.5699e-03, + 2DIAGNOSTIC, 19, -6.458038040699e-01, 1.574210654630e-04, 2.5103e-01, 2.4309e-03, + 2DIAGNOSTIC, 20, -6.458698839022e-01, 1.395339335618e-04, 2.5327e-01, 2.2409e-03, + 2DIAGNOSTIC, 21, -6.460633499294e-01, 1.184265635418e-04, 2.5551e-01, 2.2469e-03, + 2DIAGNOSTIC, 22, -6.461342972571e-01, 9.342661055176e-05, 2.5777e-01, 2.2550e-03, + 2DIAGNOSTIC, 23, -6.466637521578e-01, 7.535323100139e-05, 2.6059e-01, 2.8219e-03, + 2DIAGNOSTIC, 24, -6.467185135998e-01, 6.676992934766e-05, 2.6337e-01, 2.7840e-03, + 2DIAGNOSTIC, 25, -6.467274642974e-01, 6.256860145892e-05, 2.6561e-01, 2.2380e-03, + 2DIAGNOSTIC, 26, -6.467513290759e-01, 5.273643785304e-05, 2.6817e-01, 2.5580e-03, + 2DIAGNOSTIC, 27, -6.467689050383e-01, 4.712626733035e-05, 2.7039e-01, 2.2149e-03, + 2DIAGNOSTIC, 28, -6.468166248512e-01, 4.169155482670e-05, 2.7288e-01, 2.4931e-03, + 2DIAGNOSTIC, 29, -6.469752275045e-01, 3.542980763213e-05, 2.7636e-01, 3.4821e-03, + 2DIAGNOSTIC, 30, -6.469036878029e-01, 2.626022939885e-05, 2.7880e-01, 2.4350e-03, + 2DIAGNOSTIC, 31, -6.469183994005e-01, 1.840455552581e-05, 2.8114e-01, 2.3429e-03, + 2DIAGNOSTIC, 32, -6.469438673397e-01, 1.053986109242e-05, 2.8378e-01, 2.6381e-03, + 2DIAGNOSTIC, 33, -6.471060977149e-01, 1.145306682044e-05, 2.8598e-01, 2.2068e-03, + 2DIAGNOSTIC, 34, -6.471208061980e-01, 1.213704937643e-05, 2.8862e-01, 2.6319e-03, + 2DIAGNOSTIC, 35, -6.472837763703e-01, 1.392273067909e-05, 2.9204e-01, 3.4230e-03, + 2DIAGNOSTIC, 36, -6.474204868269e-01, 1.635034780748e-05, 2.9433e-01, 2.2910e-03, + 2DIAGNOSTIC, 37, -6.474277637858e-01, 1.743037818843e-05, 2.9646e-01, 2.1341e-03, + 2DIAGNOSTIC, 38, -6.474329252107e-01, 1.744400260709e-05, 2.9857e-01, 2.1021e-03, + 2DIAGNOSTIC, 39, -6.473052692973e-01, 1.626302910056e-05, 3.0094e-01, 2.3780e-03, + 2DIAGNOSTIC, 40, -6.473091845199e-01, 1.295627558196e-05, 3.0304e-01, 2.0928e-03, + 2DIAGNOSTIC, 41, -6.471762068305e-01, 7.346123279881e-06, 3.0512e-01, 2.0819e-03, + 2DIAGNOSTIC, 42, -6.471780598766e-01, 1.657058992983e-06, 3.0774e-01, 2.6212e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.478255209177e-01, 1.797693134862e+308, 5.2325e-01, 2.1551e-01, + 2DIAGNOSTIC, 2, -5.487433511889e-01, 1.797693134862e+308, 5.3787e-01, 1.4622e-02, + 2DIAGNOSTIC, 3, -5.497028727410e-01, 1.797693134862e+308, 5.5288e-01, 1.5011e-02, + 2DIAGNOSTIC, 4, -5.508289349912e-01, 1.797693134862e+308, 5.6777e-01, 1.4888e-02, + 2DIAGNOSTIC, 5, -5.519056209639e-01, 1.797693134862e+308, 5.8275e-01, 1.4977e-02, + 2DIAGNOSTIC, 6, -5.532280095612e-01, 1.797693134862e+308, 5.9931e-01, 1.6567e-02, + 2DIAGNOSTIC, 7, -5.540581118020e-01, 1.797693134862e+308, 6.2127e-01, 2.1960e-02, + 2DIAGNOSTIC, 8, -5.545457799632e-01, 1.797693134862e+308, 6.3610e-01, 1.4829e-02, + 2DIAGNOSTIC, 9, -5.547305093564e-01, 1.797693134862e+308, 6.5091e-01, 1.4812e-02, + 2DIAGNOSTIC, 10, -5.551622106611e-01, 9.140493857422e-04, 6.7359e-01, 2.2674e-02, + 2DIAGNOSTIC, 11, -5.552478903635e-01, 7.224441670555e-04, 6.9075e-01, 1.7159e-02, + 2DIAGNOSTIC, 12, -5.553444130912e-01, 5.414141286428e-04, 7.0568e-01, 1.4935e-02, + 2DIAGNOSTIC, 13, -5.555223874498e-01, 3.845337180853e-04, 7.2068e-01, 1.4998e-02, + 2DIAGNOSTIC, 14, -5.556310157614e-01, 2.604089761019e-04, 7.3549e-01, 1.4806e-02, + 2DIAGNOSTIC, 15, -5.558194032795e-01, 1.717262255492e-04, 7.5232e-01, 1.6835e-02, + 2DIAGNOSTIC, 16, -5.560889634252e-01, 1.290992716230e-04, 7.8225e-01, 2.9931e-02, + 2DIAGNOSTIC, 17, -5.560852984621e-01, 1.044395755024e-04, 7.9699e-01, 1.4734e-02, + 2DIAGNOSTIC, 18, -5.560903412881e-01, 8.722247239467e-05, 8.1145e-01, 1.4468e-02, + 2DIAGNOSTIC, 19, -5.560856847856e-01, 6.853527761267e-05, 8.2605e-01, 1.4595e-02, + 2DIAGNOSTIC, 20, -5.560999666650e-01, 5.688064862145e-05, 8.4059e-01, 1.4538e-02, + 2DIAGNOSTIC, 21, -5.561221073367e-01, 4.371536939966e-05, 8.5811e-01, 1.7519e-02, + 2DIAGNOSTIC, 22, -5.561451679168e-01, 3.054799184947e-05, 8.7741e-01, 1.9309e-02, + 2DIAGNOSTIC, 23, -5.561261564204e-01, 1.942635630456e-05, 8.9427e-01, 1.6854e-02, + 2DIAGNOSTIC, 24, -5.561331098860e-01, 9.991274205028e-06, 9.0890e-01, 1.4630e-02, + 2DIAGNOSTIC, 25, -5.561304862679e-01, 4.144451474966e-06, 9.2386e-01, 1.4960e-02, + 2DIAGNOSTIC, 26, -5.561471993187e-01, 4.111721785272e-06, 9.3879e-01, 1.4935e-02, + 2DIAGNOSTIC, 27, -5.561581608279e-01, 3.933740554955e-06, 9.5580e-01, 1.7005e-02, + 2DIAGNOSTIC, 28, -5.561682601355e-01, 3.799263610160e-06, 9.7289e-01, 1.7096e-02, + 2DIAGNOSTIC, 29, -5.561707465060e-01, 3.390086796486e-06, 9.8874e-01, 1.5846e-02, + 2DIAGNOSTIC, 30, -5.561774345380e-01, 3.141647676820e-06, 1.0040e+00, 1.5247e-02, + 2DIAGNOSTIC, 31, -5.562016866099e-01, 3.461306865571e-06, 1.0209e+00, 1.6903e-02, + 2DIAGNOSTIC, 32, -5.562124609732e-01, 4.067774382006e-06, 1.0356e+00, 1.4751e-02, + 2DIAGNOSTIC, 33, -5.561999314476e-01, 3.855168802511e-06, 1.0544e+00, 1.8722e-02, + 2DIAGNOSTIC, 34, -5.562048152131e-01, 3.577776935597e-06, 1.0709e+00, 1.6523e-02, + 2DIAGNOSTIC, 35, -5.561843624281e-01, 2.720283901712e-06, 1.0858e+00, 1.4867e-02, + 2DIAGNOSTIC, 36, -5.561928825307e-01, 2.094798900266e-06, 1.1008e+00, 1.4998e-02, + 2DIAGNOSTIC, 37, -5.562049504639e-01, 1.695986546681e-06, 1.1158e+00, 1.5090e-02, + 2DIAGNOSTIC, 38, -5.562214548763e-01, 1.597006443959e-06, 1.1306e+00, 1.4784e-02, + 2DIAGNOSTIC, 39, -5.562474091607e-01, 1.805985673998e-06, 1.1489e+00, 1.8312e-02, + 2DIAGNOSTIC, 40, -5.562514840179e-01, 2.037463242642e-06, 1.1714e+00, 2.2465e-02, + 2DIAGNOSTIC, 41, -5.562535867810e-01, 2.468023217902e-06, 1.1868e+00, 1.5397e-02, + 2DIAGNOSTIC, 42, -5.562544919258e-01, 2.861419827454e-06, 1.2014e+00, 1.4561e-02, + 2DIAGNOSTIC, 43, -5.562571389698e-01, 2.910772046425e-06, 1.2161e+00, 1.4773e-02, + 2DIAGNOSTIC, 44, -5.562646324735e-01, 2.898462697794e-06, 1.2322e+00, 1.6105e-02, + 2DIAGNOSTIC, 45, -5.562649288965e-01, 2.447529709598e-06, 1.2509e+00, 1.8691e-02, + 2DIAGNOSTIC, 46, -5.562653552318e-01, 1.953234442038e-06, 1.2714e+00, 2.0428e-02, + 2DIAGNOSTIC, 47, -5.562657624075e-01, 1.495069903996e-06, 1.2863e+00, 1.4922e-02, + 2DIAGNOSTIC, 48, -5.562688770191e-01, 1.179110135238e-06, 1.3011e+00, 1.4790e-02, + 2DIAGNOSTIC, 49, -5.562727307577e-01, 1.135021525860e-06, 1.3158e+00, 1.4748e-02, + 2DIAGNOSTIC, 50, -5.562727757761e-01, 1.087316389484e-06, 1.3307e+00, 1.4911e-02, + 2DIAGNOSTIC, 51, -5.562730831649e-01, 1.024668672245e-06, 1.3478e+00, 1.7044e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.612448949312e-01, 1.797693134862e+308, 1.7371e+00, 3.8936e-01, + 2DIAGNOSTIC, 2, -4.619625122940e-01, 1.797693134862e+308, 1.8389e+00, 1.0182e-01, + 2DIAGNOSTIC, 3, -4.625111438909e-01, 1.797693134862e+308, 1.9437e+00, 1.0475e-01, + 2DIAGNOSTIC, 4, -4.627596439587e-01, 1.797693134862e+308, 2.0492e+00, 1.0555e-01, + 2DIAGNOSTIC, 5, -4.629284710798e-01, 1.797693134862e+308, 2.1594e+00, 1.1020e-01, + 2DIAGNOSTIC, 6, -4.632753309883e-01, 1.797693134862e+308, 2.3023e+00, 1.4281e-01, + 2DIAGNOSTIC, 7, -4.632977100718e-01, 1.797693134862e+308, 2.4186e+00, 1.1633e-01, + 2DIAGNOSTIC, 8, -4.633016612302e-01, 1.797693134862e+308, 2.5333e+00, 1.1475e-01, + 2DIAGNOSTIC, 9, -4.633053869792e-01, 1.797693134862e+308, 2.6613e+00, 1.2797e-01, + 2DIAGNOSTIC, 10, -4.633079034083e-01, 2.549530337727e-04, 2.7660e+00, 1.0472e-01, + 2DIAGNOSTIC, 11, -4.633097612793e-01, 1.482796857255e-04, 2.8666e+00, 1.0060e-01, + 2DIAGNOSTIC, 12, -4.633118869475e-01, 8.259882993863e-05, 2.9956e+00, 1.2899e-01, + 2DIAGNOSTIC, 13, -4.633120259356e-01, 4.575012582043e-05, 3.1787e+00, 1.8305e-01, + 2DIAGNOSTIC, 14, -4.633120269921e-01, 2.111983621143e-05, 3.5278e+00, 3.4919e-01, + 2DIAGNOSTIC, 15, -4.633120269920e-01, 4.570525274861e-06, 3.6967e+00, 1.6886e-01, + 2DIAGNOSTIC, 16, -4.633120269920e-01, 3.152413149660e-06, 3.8119e+00, 1.1520e-01, + 2DIAGNOSTIC, 17, -4.633120269920e-01, 2.599712033535e-06, 3.9302e+00, 1.1828e-01, + 2DIAGNOSTIC, 18, -4.633120269920e-01, 2.174084456269e-06, 4.0618e+00, 1.3161e-01, + 2DIAGNOSTIC, 19, -4.633120269920e-01, 1.875542701646e-06, 4.1924e+00, 1.3061e-01, + 2DIAGNOSTIC, 20, -4.633120269920e-01, 1.664703236905e-06, 4.3118e+00, 1.1944e-01, + 2DIAGNOSTIC, 21, -4.633120269920e-01, 1.519692624262e-06, 4.4313e+00, 1.1947e-01, + 2DIAGNOSTIC, 22, -4.633120269920e-01, 1.446677060077e-06, 4.5504e+00, 1.1904e-01, + 2DIAGNOSTIC, 23, -4.633120269920e-01, 1.383718991929e-06, 4.6701e+00, 1.1978e-01, + 2DIAGNOSTIC, 24, -4.633120269920e-01, 1.326036913954e-06, 4.7857e+00, 1.1557e-01, + 2DIAGNOSTIC, 25, -4.633120269920e-01, 1.272971485826e-06, 4.8883e+00, 1.0263e-01, + 2DIAGNOSTIC, 26, -4.633120269920e-01, 1.223989785949e-06, 5.0070e+00, 1.1862e-01, + 2DIAGNOSTIC, 27, -4.633120269920e-01, 1.178637877158e-06, 5.1233e+00, 1.1633e-01, + 2DIAGNOSTIC, 28, -4.633120269920e-01, 1.136526696477e-06, 5.2376e+00, 1.1429e-01, + 2DIAGNOSTIC, 29, -4.633120269920e-01, 1.097320865603e-06, 5.3815e+00, 1.4396e-01, + 2DIAGNOSTIC, 30, -4.633120269920e-01, 1.060729740286e-06, 5.5142e+00, 1.3262e-01, + 2DIAGNOSTIC, 31, -4.633120269920e-01, 1.026500192340e-06, 5.6351e+00, 1.2095e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.962111721376e-01, 1.797693134862e+308, 7.1250e+00, 1.4899e+00, + 2DIAGNOSTIC, 2, -3.962881472342e-01, 1.797693134862e+308, 7.7423e+00, 6.1729e-01, + 2DIAGNOSTIC, 3, -3.963722787414e-01, 1.797693134862e+308, 8.3556e+00, 6.1327e-01, + 2DIAGNOSTIC, 4, -3.964924170864e-01, 1.797693134862e+308, 9.1435e+00, 7.8796e-01, + 2DIAGNOSTIC, 5, -3.965134809555e-01, 1.797693134862e+308, 9.8361e+00, 6.9259e-01, + 2DIAGNOSTIC, 6, -3.965316715810e-01, 1.797693134862e+308, 1.0523e+01, 6.8725e-01, + 2DIAGNOSTIC, 7, -3.965757119177e-01, 1.797693134862e+308, 1.1139e+01, 6.1528e-01, + 2DIAGNOSTIC, 8, -3.965852497563e-01, 1.797693134862e+308, 1.1841e+01, 7.0259e-01, + 2DIAGNOSTIC, 9, -3.965972969832e-01, 1.797693134862e+308, 1.2534e+01, 6.9255e-01, + 2DIAGNOSTIC, 10, -3.966107332348e-01, 6.490526261539e-05, 1.3139e+01, 6.0542e-01, + 2DIAGNOSTIC, 11, -3.975998114363e-01, 1.093698586227e-04, 1.4002e+01, 8.6258e-01, + 2DIAGNOSTIC, 12, -3.984483980378e-01, 1.903339291904e-04, 1.4814e+01, 8.1257e-01, + 2DIAGNOSTIC, 13, -3.984522612112e-01, 2.458511626038e-04, 1.5962e+01, 1.1472e+00, + 2DIAGNOSTIC, 14, -3.984536347797e-01, 2.788642869392e-04, 1.7062e+01, 1.1000e+00, + 2DIAGNOSTIC, 15, -3.984535166266e-01, 2.836929162446e-04, 1.7771e+01, 7.0919e-01, + 2DIAGNOSTIC, 16, -3.984534312111e-01, 2.619812081656e-04, 1.8493e+01, 7.2198e-01, + 2DIAGNOSTIC, 17, -3.984534665925e-01, 2.200018058529e-04, 1.9196e+01, 7.0342e-01, + 2DIAGNOSTIC, 18, -3.984533569817e-01, 1.634317893141e-04, 1.9886e+01, 6.8958e-01, + 2DIAGNOSTIC, 19, -3.984533284496e-01, 9.926113459142e-05, 2.0491e+01, 6.0549e-01, + 2DIAGNOSTIC, 20, -3.984530904005e-01, 3.228327318099e-05, 2.1249e+01, 7.5757e-01, + 2DIAGNOSTIC, 21, -3.984530349752e-01, 1.691385597136e-06, 2.1850e+01, 6.0139e-01, + 2DIAGNOSTIC, 22, -3.984528964764e-01, 1.441056512466e-06, 2.2638e+01, 7.8822e-01, + 2DIAGNOSTIC, 23, -3.984529653799e-01, 1.334260808526e-06, 2.3330e+01, 6.9158e-01, + 2DIAGNOSTIC, 24, -3.984528811809e-01, 1.279656945123e-06, 2.3934e+01, 6.0360e-01, + 2DIAGNOSTIC, 25, -3.984528389643e-01, 1.229593432441e-06, 2.4532e+01, 5.9867e-01, + 2DIAGNOSTIC, 26, -3.984530126953e-01, 1.190113416864e-06, 2.5215e+01, 6.8284e-01, + 2DIAGNOSTIC, 27, -3.984531659022e-01, 1.161775753329e-06, 2.5903e+01, 6.8800e-01, + 2DIAGNOSTIC, 28, -3.984529887400e-01, 1.129744738447e-06, 2.6506e+01, 6.0318e-01, + 2DIAGNOSTIC, 29, -3.984528895681e-01, 1.097944632683e-06, 2.7207e+01, 7.0059e-01, + 2DIAGNOSTIC, 30, -3.984529353410e-01, 1.063884553482e-06, 2.7916e+01, 7.0930e-01, + 2DIAGNOSTIC, 31, -3.984526236393e-01, 1.023279060014e-06, 2.8780e+01, 8.6350e-01, + Elapsed time (stage 1): 2.9198e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.017896946772e-01, 1.797693134862e+308, 2.9508e-01, 2.9507e-01, + 1DIAGNOSTIC, 2, -9.108819540315e-01, 1.797693134862e+308, 4.0234e-01, 1.0727e-01, + 1DIAGNOSTIC, 3, -9.184149534984e-01, 1.797693134862e+308, 5.0738e-01, 1.0504e-01, + 1DIAGNOSTIC, 4, -9.246874395280e-01, 1.797693134862e+308, 6.0632e-01, 9.8934e-02, + 1DIAGNOSTIC, 5, -9.297960859000e-01, 1.797693134862e+308, 7.0768e-01, 1.0137e-01, + 1DIAGNOSTIC, 6, -9.335258973397e-01, 1.797693134862e+308, 8.0185e-01, 9.4164e-02, + 1DIAGNOSTIC, 7, -9.368891612846e-01, 1.797693134862e+308, 9.0484e-01, 1.0300e-01, + 1DIAGNOSTIC, 8, -9.398527866005e-01, 1.797693134862e+308, 1.0023e+00, 9.7433e-02, + 1DIAGNOSTIC, 9, -9.424547030661e-01, 1.797693134862e+308, 1.0939e+00, 9.1669e-02, + 1DIAGNOSTIC, 10, -9.447603385819e-01, 2.817318611959e-03, 1.1874e+00, 9.3457e-02, + 1DIAGNOSTIC, 11, -9.468034605108e-01, 2.132763336590e-03, 1.2805e+00, 9.3048e-02, + 1DIAGNOSTIC, 12, -9.485757812622e-01, 1.646283370504e-03, 1.3787e+00, 9.8277e-02, + 1DIAGNOSTIC, 13, -9.502479830099e-01, 1.300494593859e-03, 1.4766e+00, 9.7907e-02, + 1DIAGNOSTIC, 14, -9.516590510131e-01, 1.051813386914e-03, 1.5763e+00, 9.9624e-02, + 1DIAGNOSTIC, 15, -9.530243760084e-01, 8.708772258769e-04, 1.6781e+00, 1.0184e-01, + 1DIAGNOSTIC, 16, -9.542140059379e-01, 7.254271442961e-04, 1.7785e+00, 1.0036e-01, + 1DIAGNOSTIC, 17, -9.553140494070e-01, 6.094226095270e-04, 1.8771e+00, 9.8594e-02, + 1DIAGNOSTIC, 18, -9.563124978141e-01, 5.162593411982e-04, 1.9817e+00, 1.0460e-01, + 1DIAGNOSTIC, 19, -9.572253171218e-01, 4.406741671177e-04, 2.0876e+00, 1.0591e-01, + 1DIAGNOSTIC, 20, -9.580587500682e-01, 3.788425388257e-04, 2.1881e+00, 1.0058e-01, + 1DIAGNOSTIC, 21, -9.588382121364e-01, 3.279684898089e-04, 2.2916e+00, 1.0348e-01, + 1DIAGNOSTIC, 22, -9.595072592707e-01, 2.843555042283e-04, 2.3952e+00, 1.0360e-01, + 1DIAGNOSTIC, 23, -9.601082644635e-01, 2.476004695808e-04, 2.5006e+00, 1.0534e-01, + 1DIAGNOSTIC, 24, -9.606490686910e-01, 2.150624232709e-04, 2.6082e+00, 1.0764e-01, + 1DIAGNOSTIC, 25, -9.611374206607e-01, 1.871549487197e-04, 2.7174e+00, 1.0918e-01, + 1DIAGNOSTIC, 26, -9.615748612896e-01, 1.625308870877e-04, 2.8177e+00, 1.0038e-01, + 1DIAGNOSTIC, 27, -9.619651583300e-01, 1.409585287956e-04, 2.9117e+00, 9.3956e-02, + 1DIAGNOSTIC, 28, -9.623103084226e-01, 1.220139423963e-04, 3.0079e+00, 9.6241e-02, + 1DIAGNOSTIC, 29, -9.626400412978e-01, 1.056932923857e-04, 3.1032e+00, 9.5225e-02, + 1DIAGNOSTIC, 30, -9.629198321761e-01, 9.157128740253e-05, 3.2111e+00, 1.0791e-01, + 1DIAGNOSTIC, 31, -9.631703028013e-01, 7.965424282774e-05, 3.3088e+00, 9.7766e-02, + 1DIAGNOSTIC, 32, -9.633946875142e-01, 6.931310720373e-05, 3.4151e+00, 1.0629e-01, + 1DIAGNOSTIC, 33, -9.635903784461e-01, 6.027315454055e-05, 3.5122e+00, 9.7015e-02, + 1DIAGNOSTIC, 34, -9.637623176144e-01, 5.234115094797e-05, 3.6110e+00, 9.8882e-02, + 1DIAGNOSTIC, 35, -9.639131432926e-01, 4.538362590449e-05, 3.7180e+00, 1.0697e-01, + 1DIAGNOSTIC, 36, -9.640497303656e-01, 3.930401580418e-05, 3.8202e+00, 1.0224e-01, + 1DIAGNOSTIC, 37, -9.640881678442e-01, 3.331880051881e-05, 3.9217e+00, 1.0144e-01, + 1DIAGNOSTIC, 38, -9.641944534998e-01, 2.808445860591e-05, 4.0264e+00, 1.0471e-01, + 1DIAGNOSTIC, 39, -9.642538970929e-01, 2.346341140400e-05, 4.1250e+00, 9.8644e-02, + 1DIAGNOSTIC, 40, -9.643341654678e-01, 1.957094786081e-05, 4.2294e+00, 1.0440e-01, + 1DIAGNOSTIC, 41, -9.642399696772e-01, 1.518862479400e-05, 4.3297e+00, 1.0025e-01, + 1DIAGNOSTIC, 42, -9.640900954850e-01, 1.018649180665e-05, 4.4268e+00, 9.7165e-02, + 1DIAGNOSTIC, 43, -9.640738293219e-01, 5.775038923295e-06, 4.5203e+00, 9.3436e-02, + 1DIAGNOSTIC, 44, -9.640624260488e-01, 2.129568076610e-06, 4.6205e+00, 1.0020e-01, + 1DIAGNOSTIC, 45, -9.639736586348e-01, -1.109205670362e-06, 4.7160e+00, 9.5498e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.266306428677e-01, 1.797693134862e+308, 5.5559e+00, 8.3993e-01, + 1DIAGNOSTIC, 2, -9.300475343744e-01, 1.797693134862e+308, 6.2339e+00, 6.7800e-01, + 1DIAGNOSTIC, 3, -9.337096129347e-01, 1.797693134862e+308, 6.9384e+00, 7.0446e-01, + 1DIAGNOSTIC, 4, -9.367985688515e-01, 1.797693134862e+308, 7.6121e+00, 6.7378e-01, + 1DIAGNOSTIC, 5, -9.391768655883e-01, 1.797693134862e+308, 8.2817e+00, 6.6954e-01, + 1DIAGNOSTIC, 6, -9.412631540024e-01, 1.797693134862e+308, 8.9529e+00, 6.7120e-01, + 1DIAGNOSTIC, 7, -9.428511162995e-01, 1.797693134862e+308, 9.6254e+00, 6.7255e-01, + 1DIAGNOSTIC, 8, -9.441455219870e-01, 1.797693134862e+308, 1.0333e+01, 7.0750e-01, + 1DIAGNOSTIC, 9, -9.452406737177e-01, 1.797693134862e+308, 1.1008e+01, 6.7531e-01, + 1DIAGNOSTIC, 10, -9.460825449260e-01, 1.311967873278e-03, 1.1693e+01, 6.8488e-01, + 1DIAGNOSTIC, 11, -9.468092867786e-01, 9.953060183985e-04, 1.2355e+01, 6.6184e-01, + 1DIAGNOSTIC, 12, -9.474531742234e-01, 7.436142501228e-04, 1.3046e+01, 6.9111e-01, + 1DIAGNOSTIC, 13, -9.480246830302e-01, 5.611930580971e-04, 1.3719e+01, 6.7339e-01, + 1DIAGNOSTIC, 14, -9.485401090237e-01, 4.311593705383e-04, 1.4395e+01, 6.7588e-01, + 1DIAGNOSTIC, 15, -9.489991072030e-01, 3.357690981578e-04, 1.5077e+01, 6.8139e-01, + 1DIAGNOSTIC, 16, -9.494294310425e-01, 2.687287410584e-04, 1.5754e+01, 6.7730e-01, + 1DIAGNOSTIC, 17, -9.498254809902e-01, 2.198395629535e-04, 1.6429e+01, 6.7455e-01, + 1DIAGNOSTIC, 18, -9.501871253810e-01, 1.836488027361e-04, 1.7101e+01, 6.7215e-01, + 1DIAGNOSTIC, 19, -9.505246249416e-01, 1.569061983495e-04, 1.7781e+01, 6.8052e-01, + 1DIAGNOSTIC, 20, -9.508409929912e-01, 1.356658115955e-04, 1.8466e+01, 6.8481e-01, + 1DIAGNOSTIC, 21, -9.511315798298e-01, 1.183761754646e-04, 1.9142e+01, 6.7608e-01, + 1DIAGNOSTIC, 22, -9.514059959423e-01, 1.041664624623e-04, 1.9824e+01, 6.8196e-01, + 1DIAGNOSTIC, 23, -9.516487211142e-01, 9.210785859665e-05, 2.0511e+01, 6.8641e-01, + 1DIAGNOSTIC, 24, -9.518757647658e-01, 8.175375384324e-05, 2.1182e+01, 6.7157e-01, + 1DIAGNOSTIC, 25, -9.520960134662e-01, 7.274978531984e-05, 2.1855e+01, 6.7333e-01, + 1DIAGNOSTIC, 26, -9.523018197991e-01, 6.498072880932e-05, 2.2544e+01, 6.8824e-01, + 1DIAGNOSTIC, 27, -9.524987500142e-01, 5.830494056997e-05, 2.3204e+01, 6.6004e-01, + 1DIAGNOSTIC, 28, -9.526818909015e-01, 5.249552523374e-05, 2.3872e+01, 6.6813e-01, + 1DIAGNOSTIC, 29, -9.528540692001e-01, 4.745451957440e-05, 2.4542e+01, 6.7033e-01, + 1DIAGNOSTIC, 30, -9.530087828541e-01, 4.302527939037e-05, 2.5213e+01, 6.7048e-01, + 1DIAGNOSTIC, 31, -9.531606380025e-01, 3.914207490635e-05, 2.5874e+01, 6.6131e-01, + 1DIAGNOSTIC, 32, -9.533047384715e-01, 3.576983495312e-05, 2.6547e+01, 6.7277e-01, + 1DIAGNOSTIC, 33, -9.534435672036e-01, 3.273193781610e-05, 2.7219e+01, 6.7237e-01, + 1DIAGNOSTIC, 34, -9.535792926061e-01, 3.001947085872e-05, 2.7898e+01, 6.7872e-01, + 1DIAGNOSTIC, 35, -9.537094659925e-01, 2.766705193520e-05, 2.8573e+01, 6.7553e-01, + 1DIAGNOSTIC, 36, -9.538352125734e-01, 2.562967843651e-05, 2.9248e+01, 6.7505e-01, + 1DIAGNOSTIC, 37, -9.539560623259e-01, 2.389155225225e-05, 2.9929e+01, 6.8094e-01, + 1DIAGNOSTIC, 38, -9.540724625515e-01, 2.238562870418e-05, 3.0617e+01, 6.8751e-01, + 1DIAGNOSTIC, 39, -9.541837138092e-01, 2.105665302212e-05, 3.1289e+01, 6.7210e-01, + 1DIAGNOSTIC, 40, -9.542930311403e-01, 1.981789869195e-05, 3.1966e+01, 6.7748e-01, + 1DIAGNOSTIC, 41, -9.543966752739e-01, 1.866909774398e-05, 3.2646e+01, 6.7963e-01, + 1DIAGNOSTIC, 42, -9.544988087891e-01, 1.760234653794e-05, 3.3324e+01, 6.7797e-01, + 1DIAGNOSTIC, 43, -9.545887913124e-01, 1.654976566880e-05, 3.4003e+01, 6.7860e-01, + 1DIAGNOSTIC, 44, -9.546895701609e-01, 1.562653888122e-05, 3.4681e+01, 6.7860e-01, + 1DIAGNOSTIC, 45, -9.547663020777e-01, 1.467641529136e-05, 3.5355e+01, 6.7411e-01, + 1DIAGNOSTIC, 46, -9.548470219089e-01, 1.376055110561e-05, 3.6034e+01, 6.7893e-01, + 1DIAGNOSTIC, 47, -9.549099454202e-01, 1.278851893384e-05, 3.6705e+01, 6.7120e-01, + 1DIAGNOSTIC, 48, -9.549789523521e-01, 1.184121624654e-05, 3.7388e+01, 6.8280e-01, + 1DIAGNOSTIC, 49, -9.550429965082e-01, 1.091796623431e-05, 3.8067e+01, 6.7861e-01, + 1DIAGNOSTIC, 50, -9.550974585668e-01, 1.001492142952e-05, 3.8748e+01, 6.8090e-01, + 1DIAGNOSTIC, 51, -9.551571733753e-01, 9.196752816840e-06, 3.9453e+01, 7.0517e-01, + 1DIAGNOSTIC, 52, -9.552054911473e-01, 8.443828465259e-06, 4.0130e+01, 6.7710e-01, + 1DIAGNOSTIC, 53, -9.552533917535e-01, 7.734881539396e-06, 4.0814e+01, 6.8407e-01, + 1DIAGNOSTIC, 54, -9.552987016715e-01, 7.168390434749e-06, 4.1555e+01, 7.4126e-01, + 1DIAGNOSTIC, 55, -9.553352268912e-01, 6.597554786193e-06, 4.2248e+01, 6.9268e-01, + 1DIAGNOSTIC, 56, -9.553715879695e-01, 6.089053396465e-06, 4.2923e+01, 6.7501e-01, + 1DIAGNOSTIC, 57, -9.553972729991e-01, 5.525804062254e-06, 4.3595e+01, 6.7199e-01, + 1DIAGNOSTIC, 58, -9.554223794362e-01, 4.984567273072e-06, 4.4274e+01, 6.7922e-01, + 1DIAGNOSTIC, 59, -9.554419177714e-01, 4.454271728883e-06, 4.4947e+01, 6.7318e-01, + 1DIAGNOSTIC, 60, -9.554690009833e-01, 3.966262711312e-06, 4.5632e+01, 6.8417e-01, + 1DIAGNOSTIC, 61, -9.554917093544e-01, 3.562836209718e-06, 4.6310e+01, 6.7889e-01, + 1DIAGNOSTIC, 62, -9.555107967921e-01, 3.200708899361e-06, 4.6983e+01, 6.7279e-01, + 1DIAGNOSTIC, 63, -9.555282571719e-01, 2.898503590112e-06, 4.7647e+01, 6.6336e-01, + 1DIAGNOSTIC, 64, -9.555452857393e-01, 2.663815434557e-06, 4.8311e+01, 6.6479e-01, + 1DIAGNOSTIC, 65, -9.555608411955e-01, 2.463238705723e-06, 4.8993e+01, 6.8147e-01, + 1DIAGNOSTIC, 66, -9.555746495372e-01, 2.303175389941e-06, 4.9670e+01, 6.7734e-01, + 1DIAGNOSTIC, 67, -9.555871580612e-01, 2.141010483868e-06, 5.0342e+01, 6.7224e-01, + 1DIAGNOSTIC, 68, -9.555990681181e-01, 1.984906375960e-06, 5.1015e+01, 6.7294e-01, + 1DIAGNOSTIC, 69, -9.556040455180e-01, 1.791013658750e-06, 5.1700e+01, 6.8446e-01, + 1DIAGNOSTIC, 70, -9.556134752389e-01, 1.629170941070e-06, 5.2391e+01, 6.9159e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.081700934717e-01, 1.797693134862e+308, 5.8127e+01, 5.7354e+00, + 1DIAGNOSTIC, 2, -9.111396536220e-01, 1.797693134862e+308, 6.3550e+01, 5.4236e+00, + 1DIAGNOSTIC, 3, -9.140779383039e-01, 1.797693134862e+308, 6.8982e+01, 5.4311e+00, + 1DIAGNOSTIC, 4, -9.168828479997e-01, 1.797693134862e+308, 7.4382e+01, 5.4005e+00, + 1DIAGNOSTIC, 5, -9.196057501068e-01, 1.797693134862e+308, 7.9737e+01, 5.3547e+00, + 1DIAGNOSTIC, 6, -9.219563453435e-01, 1.797693134862e+308, 8.5065e+01, 5.3282e+00, + 1DIAGNOSTIC, 7, -9.240023887805e-01, 1.797693134862e+308, 9.0416e+01, 5.3511e+00, + 1DIAGNOSTIC, 8, -9.256412955093e-01, 1.797693134862e+308, 9.5743e+01, 5.3269e+00, + 1DIAGNOSTIC, 9, -9.270323955997e-01, 1.797693134862e+308, 1.0113e+02, 5.3826e+00, + 1DIAGNOSTIC, 10, -9.282365548288e-01, 1.417977621549e-03, 1.0650e+02, 5.3768e+00, + 1DIAGNOSTIC, 11, -9.293026058085e-01, 1.148428684525e-03, 1.1187e+02, 5.3643e+00, + 1DIAGNOSTIC, 12, -9.301130462711e-01, 9.174175889464e-04, 1.1729e+02, 5.4208e+00, + 1DIAGNOSTIC, 13, -9.309584249992e-01, 7.284275789283e-04, 1.2264e+02, 5.3488e+00, + 1DIAGNOSTIC, 14, -9.316053873445e-01, 5.756531458027e-04, 1.2798e+02, 5.3439e+00, + 1DIAGNOSTIC, 15, -9.321805270477e-01, 4.579414684164e-04, 1.3337e+02, 5.3914e+00, + 1DIAGNOSTIC, 16, -9.326955231868e-01, 3.676758534244e-04, 1.3872e+02, 5.3533e+00, + 1DIAGNOSTIC, 17, -9.331612860740e-01, 2.993732254087e-04, 1.4414e+02, 5.4110e+00, + 1DIAGNOSTIC, 18, -9.335914211679e-01, 2.461355839638e-04, 1.4949e+02, 5.3586e+00, + 1DIAGNOSTIC, 19, -9.339791948512e-01, 2.042939214749e-04, 1.5488e+02, 5.3862e+00, + 1DIAGNOSTIC, 20, -9.343229886073e-01, 1.713105810436e-04, 1.6025e+02, 5.3645e+00, + 1DIAGNOSTIC, 21, -9.346526280329e-01, 1.458879696827e-04, 1.6561e+02, 5.3662e+00, + 1DIAGNOSTIC, 22, -9.349545067554e-01, 1.245836743854e-04, 1.7100e+02, 5.3841e+00, + 1DIAGNOSTIC, 23, -9.352317417201e-01, 1.084236662637e-04, 1.7636e+02, 5.3615e+00, + 1DIAGNOSTIC, 24, -9.354861278475e-01, 9.495885461664e-05, 1.8169e+02, 5.3309e+00, + 1DIAGNOSTIC, 25, -9.357255307286e-01, 8.365347233349e-05, 1.8710e+02, 5.4115e+00, + 1DIAGNOSTIC, 26, -9.359505041072e-01, 7.408767365471e-05, 1.9249e+02, 5.3861e+00, + 1DIAGNOSTIC, 27, -9.361603499243e-01, 6.593545241560e-05, 1.9789e+02, 5.4013e+00, + 1DIAGNOSTIC, 28, -9.363539947721e-01, 5.899746298075e-05, 2.0333e+02, 5.4475e+00, + 1DIAGNOSTIC, 29, -9.365335650137e-01, 5.299564369628e-05, 2.0878e+02, 5.4431e+00, + 1DIAGNOSTIC, 30, -9.367036297825e-01, 4.766419492431e-05, 2.1421e+02, 5.4278e+00, + 1DIAGNOSTIC, 31, -9.368599135628e-01, 4.300151438017e-05, 2.1963e+02, 5.4297e+00, + 1DIAGNOSTIC, 32, -9.370114555018e-01, 3.893471913254e-05, 2.2506e+02, 5.4294e+00, + 1DIAGNOSTIC, 33, -9.371503926596e-01, 3.532560740530e-05, 2.3047e+02, 5.4064e+00, + 1DIAGNOSTIC, 34, -9.372825461703e-01, 3.210075404787e-05, 2.3591e+02, 5.4360e+00, + 1DIAGNOSTIC, 35, -9.374046121353e-01, 2.921683748971e-05, 2.4136e+02, 5.4519e+00, + 1DIAGNOSTIC, 36, -9.375222734281e-01, 2.667434339892e-05, 2.4679e+02, 5.4268e+00, + 1DIAGNOSTIC, 37, -9.376351995499e-01, 2.444738217157e-05, 2.5220e+02, 5.4181e+00, + 1DIAGNOSTIC, 38, -9.377389972575e-01, 2.245221534290e-05, 2.5771e+02, 5.5036e+00, + 1DIAGNOSTIC, 39, -9.378352652437e-01, 2.063301852650e-05, 2.6320e+02, 5.4917e+00, + 1DIAGNOSTIC, 40, -9.379244218716e-01, 1.897076757747e-05, 2.6979e+02, 6.5946e+00, + 1DIAGNOSTIC, 41, -9.380074091479e-01, 1.741423605083e-05, 2.7700e+02, 7.2106e+00, + 1DIAGNOSTIC, 42, -9.380880414070e-01, 1.600996004624e-05, 2.8399e+02, 6.9861e+00, + 1DIAGNOSTIC, 43, -9.381684450220e-01, 1.475103892126e-05, 2.9116e+02, 7.1656e+00, + 1DIAGNOSTIC, 44, -9.382424180719e-01, 1.362197037592e-05, 2.9808e+02, 6.9239e+00, + 1DIAGNOSTIC, 45, -9.383099469282e-01, 1.257931231936e-05, 3.0531e+02, 7.2266e+00, + 1DIAGNOSTIC, 46, -9.383726257844e-01, 1.162762957004e-05, 3.1258e+02, 7.2696e+00, + 1DIAGNOSTIC, 47, -9.384299028091e-01, 1.076057181526e-05, 3.1955e+02, 6.9706e+00, + 1DIAGNOSTIC, 48, -9.384799369786e-01, 9.928419369691e-06, 3.2683e+02, 7.2796e+00, + 1DIAGNOSTIC, 49, -9.385285206301e-01, 9.133072899719e-06, 3.3389e+02, 7.0630e+00, + 1DIAGNOSTIC, 50, -9.385782621320e-01, 8.393706718166e-06, 3.4101e+02, 7.1214e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.053953452478e-01, 1.797693134862e+308, 4.0001e+02, 5.9000e+01, + 1DIAGNOSTIC, 2, -9.069880470059e-01, 1.797693134862e+308, 4.5326e+02, 5.3250e+01, + 1DIAGNOSTIC, 3, -9.087125101709e-01, 1.797693134862e+308, 4.9721e+02, 4.3946e+01, + 1DIAGNOSTIC, 4, -9.102081535995e-01, 1.797693134862e+308, 5.4692e+02, 4.9709e+01, + 1DIAGNOSTIC, 5, -9.117872875380e-01, 1.797693134862e+308, 5.9534e+02, 4.8421e+01, + 1DIAGNOSTIC, 6, -9.133153257957e-01, 1.797693134862e+308, 6.4659e+02, 5.1252e+01, + 1DIAGNOSTIC, 7, -9.146649280755e-01, 1.797693134862e+308, 6.9717e+02, 5.0584e+01, + 1DIAGNOSTIC, 8, -9.159486680500e-01, 1.797693134862e+308, 7.4756e+02, 5.0388e+01, + 1DIAGNOSTIC, 9, -9.171865706905e-01, 1.797693134862e+308, 7.9890e+02, 5.1343e+01, + 1DIAGNOSTIC, 10, -9.183903234355e-01, 9.165726459974e-04, 8.4724e+02, 4.8336e+01, + 1DIAGNOSTIC, 11, -9.194748755425e-01, 7.955395644845e-04, 8.9777e+02, 5.0529e+01, + 1DIAGNOSTIC, 12, -9.203725961335e-01, 6.873812371735e-04, 9.5014e+02, 5.2376e+01, + 1DIAGNOSTIC, 13, -9.210998420354e-01, 5.922345132838e-04, 1.0032e+03, 5.3040e+01, + 1DIAGNOSTIC, 14, -9.216795690059e-01, 5.026709483676e-04, 1.0557e+03, 5.2512e+01, + 1DIAGNOSTIC, 15, -9.221464480478e-01, 4.212260142491e-04, 1.1086e+03, 5.2946e+01, + 1DIAGNOSTIC, 16, -9.226317193537e-01, 3.502082889364e-04, 1.1615e+03, 5.2891e+01, + 1DIAGNOSTIC, 17, -9.228402406712e-01, 2.835764680496e-04, 1.2138e+03, 5.2282e+01, + 1DIAGNOSTIC, 18, -9.231051355138e-01, 2.248310348281e-04, 1.2664e+03, 5.2537e+01, + 1DIAGNOSTIC, 19, -9.233492331740e-01, 1.755306541023e-04, 1.3181e+03, 5.1734e+01, + 1DIAGNOSTIC, 20, -9.234928237684e-01, 1.355997073375e-04, 1.3694e+03, 5.1302e+01, + Elapsed time (stage 2): 1370 + + +Total elapsed time: 1424 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:29 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:29 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:32 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:36 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:40 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 14904 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:40 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:44 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 14956 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:44 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:47 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:47 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15001 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:47 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15007 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:47 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:16 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:18 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:18 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:23 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:23 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:24 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:25 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:28 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:37 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:49 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC001 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:50 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC001 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:50 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC001 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15786 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:52 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:53 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15829 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:54 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:54 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC001_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 76.600 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/logs/proc_func_17-03-2024-6776.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:14:00 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC001 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/QC/sub-PNC001_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC001* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 76.817 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC001_ses-01 +========================reprocessing without filter=================== +sub-PNC001_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC001 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC001 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC001 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC001 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:14:04 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:14:04 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz is 38.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:16:20 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:18:37 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:18:52 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.75 (mm) at sub-brick 1 +++ Max delta displ in automask = 0.23 (mm) at sub-brick 91 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:32:54 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:33:12 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz is 38.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:35:30 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:37:46 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz is 38.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:40:05 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.291 -2.799 2.676 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 75.5 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.288 -4.325 4.955 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 77.5 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:45:11 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:45:41 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5557cec446f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.3, 55.9598, -117.921] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5557ceabb730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5557cec5b320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5557cec47fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [78.064, 115.969, -133.842] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5557cec4de10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5557cf458230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5557cf4565c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.3, 55.9598, -117.921] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5557cec4a3f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5557cff82450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5557cf454da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [78.064, 115.969, -133.842] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5557cec51360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5557d077c780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.953753978840e-01, 1.797693134862e+308, 4.5794e-02, 4.5793e-02, + 2DIAGNOSTIC, 2, -7.986732697681e-01, 1.797693134862e+308, 4.7128e-02, 1.3340e-03, + 2DIAGNOSTIC, 3, -8.060505216898e-01, 1.797693134862e+308, 4.8919e-02, 1.7910e-03, + 2DIAGNOSTIC, 4, -8.168256004761e-01, 1.797693134862e+308, 5.0973e-02, 2.0540e-03, + 2DIAGNOSTIC, 5, -8.277713596338e-01, 1.797693134862e+308, 5.2968e-02, 1.9951e-03, + 2DIAGNOSTIC, 6, -8.369639497220e-01, 1.797693134862e+308, 5.4808e-02, 1.8401e-03, + 2DIAGNOSTIC, 7, -8.488297350840e-01, 1.797693134862e+308, 5.6023e-02, 1.2150e-03, + 2DIAGNOSTIC, 8, -8.584894125115e-01, 1.797693134862e+308, 5.8091e-02, 2.0678e-03, + 2DIAGNOSTIC, 9, -8.697841667389e-01, 1.797693134862e+308, 6.0293e-02, 2.2020e-03, + 2DIAGNOSTIC, 10, -8.715641561677e-01, 6.539735833138e-03, 6.1813e-02, 1.5202e-03, + 2DIAGNOSTIC, 11, -8.760583452725e-01, 5.809838584380e-03, 6.3581e-02, 1.7679e-03, + 2DIAGNOSTIC, 12, -8.773571633748e-01, 4.814351950264e-03, 6.5015e-02, 1.4341e-03, + 2DIAGNOSTIC, 13, -8.790425530012e-01, 3.773661685811e-03, 6.6460e-02, 1.4451e-03, + 2DIAGNOSTIC, 14, -8.815478634328e-01, 2.859258626817e-03, 6.8401e-02, 1.9410e-03, + 2DIAGNOSTIC, 15, -8.868038252806e-01, 2.170541366501e-03, 7.0068e-02, 1.6670e-03, + 2DIAGNOSTIC, 16, -8.898344620387e-01, 1.623392793226e-03, 7.1992e-02, 1.9240e-03, + 2DIAGNOSTIC, 17, -8.923482365606e-01, 1.273168754632e-03, 7.3445e-02, 1.4529e-03, + 2DIAGNOSTIC, 18, -8.928115567115e-01, 1.029008091660e-03, 7.4911e-02, 1.4660e-03, + 2DIAGNOSTIC, 19, -8.956045566105e-01, 9.625032410951e-04, 7.6602e-02, 1.6909e-03, + 2DIAGNOSTIC, 20, -8.973548749881e-01, 8.683192482706e-04, 7.8026e-02, 1.4241e-03, + 2DIAGNOSTIC, 21, -8.975308295503e-01, 7.752200018677e-04, 7.9540e-02, 1.5140e-03, + 2DIAGNOSTIC, 22, -8.995557124589e-01, 6.695827008534e-04, 8.1749e-02, 2.2089e-03, + 2DIAGNOSTIC, 23, -9.008124095690e-01, 5.528948796256e-04, 8.4396e-02, 2.6469e-03, + 2DIAGNOSTIC, 24, -9.019633574886e-01, 4.427732342250e-04, 8.5946e-02, 1.5500e-03, + 2DIAGNOSTIC, 25, -9.027784858117e-01, 3.789456667852e-04, 8.7474e-02, 1.5280e-03, + 2DIAGNOSTIC, 26, -9.036093354271e-01, 3.329519555558e-04, 8.9423e-02, 1.9491e-03, + 2DIAGNOSTIC, 27, -9.042728336866e-01, 2.978720243842e-04, 9.0961e-02, 1.5380e-03, + 2DIAGNOSTIC, 28, -9.052079113651e-01, 2.527287651814e-04, 9.2487e-02, 1.5261e-03, + 2DIAGNOSTIC, 29, -9.062302634166e-01, 2.293712575718e-04, 9.4438e-02, 1.9510e-03, + 2DIAGNOSTIC, 30, -9.068527671108e-01, 2.119067966602e-04, 9.5764e-02, 1.3261e-03, + 2DIAGNOSTIC, 31, -9.077622665646e-01, 1.866851593147e-04, 9.7108e-02, 1.3440e-03, + 2DIAGNOSTIC, 32, -9.090928491999e-01, 1.792354406376e-04, 9.8405e-02, 1.2970e-03, + 2DIAGNOSTIC, 33, -9.171084965559e-01, 2.458373374692e-04, 1.0033e-01, 1.9209e-03, + 2DIAGNOSTIC, 34, -9.195815032958e-01, 3.174502493364e-04, 1.0263e-01, 2.3022e-03, + 2DIAGNOSTIC, 35, -9.196483683925e-01, 3.631617862293e-04, 1.0392e-01, 1.2910e-03, + 2DIAGNOSTIC, 36, -9.191860703734e-01, 3.764246003833e-04, 1.0524e-01, 1.3249e-03, + 2DIAGNOSTIC, 37, -9.195654512592e-01, 3.622685895396e-04, 1.0658e-01, 1.3380e-03, + 2DIAGNOSTIC, 38, -9.198748379438e-01, 3.235903171697e-04, 1.0789e-01, 1.3070e-03, + 2DIAGNOSTIC, 39, -9.203377963178e-01, 2.679210728779e-04, 1.0937e-01, 1.4851e-03, + 2DIAGNOSTIC, 40, -9.208481175172e-01, 1.996661856584e-04, 1.1067e-01, 1.2980e-03, + 2DIAGNOSTIC, 41, -9.210824356368e-01, 1.256550809555e-04, 1.1237e-01, 1.6961e-03, + 2DIAGNOSTIC, 42, -9.212808789505e-01, 5.355314040838e-05, 1.1408e-01, 1.7099e-03, + 2DIAGNOSTIC, 43, -9.214908326823e-01, 4.055091144238e-05, 1.1536e-01, 1.2801e-03, + 2DIAGNOSTIC, 44, -9.216552910263e-01, 4.345265199440e-05, 1.1688e-01, 1.5199e-03, + 2DIAGNOSTIC, 45, -9.230593840417e-01, 5.267739113682e-05, 1.1980e-01, 2.9199e-03, + 2DIAGNOSTIC, 46, -9.231012447123e-01, 5.331594841474e-05, 1.2188e-01, 2.0859e-03, + 2DIAGNOSTIC, 47, -9.220028520813e-01, 4.413903138809e-05, 1.2341e-01, 1.5290e-03, + 2DIAGNOSTIC, 48, -9.209004645996e-01, 2.624218494967e-05, 1.2495e-01, 1.5328e-03, + 2DIAGNOSTIC, 49, -9.209233996861e-01, 9.822966288126e-06, 1.2640e-01, 1.4570e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.119777678373e-01, 1.797693134862e+308, 1.7180e-01, 4.5395e-02, + 2DIAGNOSTIC, 2, -5.123343860118e-01, 1.797693134862e+308, 1.7436e-01, 2.5599e-03, + 2DIAGNOSTIC, 3, -5.143613283785e-01, 1.797693134862e+308, 1.7684e-01, 2.4860e-03, + 2DIAGNOSTIC, 4, -5.159432749435e-01, 1.797693134862e+308, 1.7926e-01, 2.4190e-03, + 2DIAGNOSTIC, 5, -5.175451781427e-01, 1.797693134862e+308, 1.8156e-01, 2.2960e-03, + 2DIAGNOSTIC, 6, -5.201240083907e-01, 1.797693134862e+308, 1.8376e-01, 2.1970e-03, + 2DIAGNOSTIC, 7, -5.293531249105e-01, 1.797693134862e+308, 1.8628e-01, 2.5280e-03, + 2DIAGNOSTIC, 8, -5.350686784305e-01, 1.797693134862e+308, 1.8916e-01, 2.8782e-03, + 2DIAGNOSTIC, 9, -5.379742292018e-01, 1.797693134862e+308, 1.9136e-01, 2.1942e-03, + 2DIAGNOSTIC, 10, -5.396478388716e-01, 3.874273436851e-03, 1.9377e-01, 2.4149e-03, + 2DIAGNOSTIC, 11, -5.422646676674e-01, 3.800901201025e-03, 1.9616e-01, 2.3842e-03, + 2DIAGNOSTIC, 12, -5.448068893768e-01, 3.520154562322e-03, 1.9955e-01, 3.3948e-03, + 2DIAGNOSTIC, 13, -5.477537361418e-01, 3.165923793625e-03, 2.0323e-01, 3.6829e-03, + 2DIAGNOSTIC, 14, -5.481307005023e-01, 2.654201011666e-03, 2.0584e-01, 2.6071e-03, + 2DIAGNOSTIC, 15, -5.492759216150e-01, 2.074351559065e-03, 2.0843e-01, 2.5899e-03, + 2DIAGNOSTIC, 16, -5.513114075851e-01, 1.527026241087e-03, 2.1104e-01, 2.6081e-03, + 2DIAGNOSTIC, 17, -5.529513225689e-01, 1.240151089643e-03, 2.1364e-01, 2.6000e-03, + 2DIAGNOSTIC, 18, -5.621819033709e-01, 1.309701165105e-03, 2.1630e-01, 2.6650e-03, + 2DIAGNOSTIC, 19, -6.205284618043e-01, 2.935564475376e-03, 2.1978e-01, 3.4752e-03, + 2DIAGNOSTIC, 20, -7.105386879628e-01, 6.407784058465e-03, 2.2314e-01, 3.3631e-03, + 2DIAGNOSTIC, 21, -7.131344648526e-01, 8.950051387412e-03, 2.2911e-01, 5.9662e-03, + 2DIAGNOSTIC, 22, -7.141355542682e-01, 1.049717040902e-02, 2.3176e-01, 2.6562e-03, + 2DIAGNOSTIC, 23, -7.166705176786e-01, 1.104613468053e-02, 2.3456e-01, 2.7912e-03, + 2DIAGNOSTIC, 24, -7.181191680681e-01, 1.052239348052e-02, 2.3761e-01, 3.0541e-03, + 2DIAGNOSTIC, 25, -7.189067520300e-01, 9.077523369188e-03, 2.4060e-01, 2.9879e-03, + 2DIAGNOSTIC, 26, -7.190948285334e-01, 6.976520508432e-03, 2.4305e-01, 2.4509e-03, + 2DIAGNOSTIC, 27, -7.192903487820e-01, 4.479341255913e-03, 2.4538e-01, 2.3370e-03, + 2DIAGNOSTIC, 28, -7.202090198474e-01, 1.940677416297e-03, 2.4816e-01, 2.7750e-03, + 2DIAGNOSTIC, 29, -7.211902728181e-01, 3.554657930344e-04, 2.5202e-01, 3.8640e-03, + 2DIAGNOSTIC, 30, -7.220159624076e-01, 2.848408086540e-04, 2.5458e-01, 2.5589e-03, + 2DIAGNOSTIC, 31, -7.220124927854e-01, 2.323187223867e-04, 2.5710e-01, 2.5220e-03, + 2DIAGNOSTIC, 32, -7.222258591505e-01, 1.791666089370e-04, 2.6009e-01, 2.9860e-03, + 2DIAGNOSTIC, 33, -7.224708667763e-01, 1.513141401603e-04, 2.6372e-01, 3.6271e-03, + 2DIAGNOSTIC, 34, -7.224951323527e-01, 1.304846090621e-04, 2.6644e-01, 2.7189e-03, + 2DIAGNOSTIC, 35, -7.224444586393e-01, 1.084289765433e-04, 2.6903e-01, 2.5930e-03, + 2DIAGNOSTIC, 36, -7.223931265195e-01, 7.964999699919e-05, 2.7157e-01, 2.5411e-03, + 2DIAGNOSTIC, 37, -7.224824247367e-01, 4.864715295758e-05, 2.7409e-01, 2.5148e-03, + 2DIAGNOSTIC, 38, -7.225669209968e-01, 2.658828927646e-05, 2.7695e-01, 2.8620e-03, + 2DIAGNOSTIC, 39, -7.227910388370e-01, 1.701608662582e-05, 2.7985e-01, 2.8980e-03, + 2DIAGNOSTIC, 40, -7.232414323354e-01, 2.079624698222e-05, 2.8271e-01, 2.8660e-03, + 2DIAGNOSTIC, 41, -7.232826994478e-01, 2.276865945868e-05, 2.8553e-01, 2.8150e-03, + 2DIAGNOSTIC, 42, -7.232735054232e-01, 2.470152943605e-05, 2.8800e-01, 2.4700e-03, + 2DIAGNOSTIC, 43, -7.233216884711e-01, 2.732186766578e-05, 2.9042e-01, 2.4230e-03, + 2DIAGNOSTIC, 44, -7.237665823373e-01, 3.195694943670e-05, 2.9375e-01, 3.3259e-03, + 2DIAGNOSTIC, 45, -7.238457447313e-01, 3.350332474899e-05, 2.9735e-01, 3.6080e-03, + 2DIAGNOSTIC, 46, -7.236832786507e-01, 2.984286174522e-05, 3.0066e-01, 3.3059e-03, + 2DIAGNOSTIC, 47, -7.237417660072e-01, 2.515017614975e-05, 3.0301e-01, 2.3530e-03, + 2DIAGNOSTIC, 48, -7.238250770147e-01, 1.982859330181e-05, 3.0532e-01, 2.3100e-03, + 2DIAGNOSTIC, 49, -7.239637425650e-01, 1.593562826462e-05, 3.0819e-01, 2.8701e-03, + 2DIAGNOSTIC, 50, -7.244183884339e-01, 1.860534851124e-05, 3.1066e-01, 2.4641e-03, + 2DIAGNOSTIC, 51, -7.248683188966e-01, 2.363686479255e-05, 3.1301e-01, 2.3489e-03, + 2DIAGNOSTIC, 52, -7.251808232741e-01, 2.878365380122e-05, 3.1538e-01, 2.3758e-03, + 2DIAGNOSTIC, 53, -7.252069085670e-01, 3.152682969200e-05, 3.1777e-01, 2.3839e-03, + 2DIAGNOSTIC, 54, -7.255076674550e-01, 3.718997690979e-05, 3.2074e-01, 2.9750e-03, + 2DIAGNOSTIC, 55, -7.255721780056e-01, 4.020068253221e-05, 3.2296e-01, 2.2190e-03, + 2DIAGNOSTIC, 56, -7.255949379143e-01, 3.817351535262e-05, 3.2551e-01, 2.5489e-03, + 2DIAGNOSTIC, 57, -7.257331066689e-01, 3.414033295520e-05, 3.2808e-01, 2.5730e-03, + 2DIAGNOSTIC, 58, -7.256713052850e-01, 2.722685992373e-05, 3.3060e-01, 2.5191e-03, + 2DIAGNOSTIC, 59, -7.264163329870e-01, 2.440009967093e-05, 3.3303e-01, 2.4259e-03, + 2DIAGNOSTIC, 60, -7.264827852072e-01, 2.288513138933e-05, 3.3548e-01, 2.4500e-03, + 2DIAGNOSTIC, 61, -7.266485044349e-01, 2.360026724477e-05, 3.3798e-01, 2.5058e-03, + 2DIAGNOSTIC, 62, -7.266696419322e-01, 2.444048285880e-05, 3.4052e-01, 2.5401e-03, + 2DIAGNOSTIC, 63, -7.266766046834e-01, 2.313021712053e-05, 3.4276e-01, 2.2409e-03, + 2DIAGNOSTIC, 64, -7.266843022750e-01, 2.168212068150e-05, 3.4527e-01, 2.5060e-03, + 2DIAGNOSTIC, 65, -7.268060085551e-01, 1.943727155039e-05, 3.4774e-01, 2.4688e-03, + 2DIAGNOSTIC, 66, -7.268097939387e-01, 1.562462789217e-05, 3.5021e-01, 2.4719e-03, + 2DIAGNOSTIC, 67, -7.268124852390e-01, 1.145041986008e-05, 3.5264e-01, 2.4331e-03, + 2DIAGNOSTIC, 68, -7.268130261176e-01, 5.874788507304e-06, 3.5508e-01, 2.4371e-03, + 2DIAGNOSTIC, 69, -7.268131723818e-01, 4.520055712418e-06, 3.5780e-01, 2.7161e-03, + 2DIAGNOSTIC, 70, -7.268131896466e-01, 3.181786350410e-06, 3.6022e-01, 2.4250e-03, + 2DIAGNOSTIC, 71, -7.268131976580e-01, 2.603618550465e-06, 3.6274e-01, 2.5210e-03, + 2DIAGNOSTIC, 72, -7.268132039861e-01, 1.972752754664e-06, 3.6524e-01, 2.5001e-03, + 2DIAGNOSTIC, 73, -7.268132081923e-01, 1.263803094727e-06, 3.6746e-01, 2.2202e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.595801091595e-01, 1.797693134862e+308, 4.3346e-01, 6.6000e-02, + 2DIAGNOSTIC, 2, -5.598933650003e-01, 1.797693134862e+308, 4.4455e-01, 1.1089e-02, + 2DIAGNOSTIC, 3, -5.602769418206e-01, 1.797693134862e+308, 4.5495e-01, 1.0401e-02, + 2DIAGNOSTIC, 4, -5.608028813673e-01, 1.797693134862e+308, 4.6535e-01, 1.0400e-02, + 2DIAGNOSTIC, 5, -5.610671532823e-01, 1.797693134862e+308, 4.7572e-01, 1.0363e-02, + 2DIAGNOSTIC, 6, -5.615205963557e-01, 1.797693134862e+308, 4.8611e-01, 1.0391e-02, + 2DIAGNOSTIC, 7, -5.619063114524e-01, 1.797693134862e+308, 5.0196e-01, 1.5853e-02, + 2DIAGNOSTIC, 8, -5.622891811412e-01, 1.797693134862e+308, 5.1264e-01, 1.0679e-02, + 2DIAGNOSTIC, 9, -5.625327331572e-01, 1.797693134862e+308, 5.2322e-01, 1.0579e-02, + 2DIAGNOSTIC, 10, -5.626891922696e-01, 3.788032963243e-04, 5.3846e-01, 1.5246e-02, + 2DIAGNOSTIC, 11, -5.627877398411e-01, 3.181752952000e-04, 5.4926e-01, 1.0798e-02, + 2DIAGNOSTIC, 12, -5.628894064074e-01, 2.566151006381e-04, 5.6008e-01, 1.0821e-02, + 2DIAGNOSTIC, 13, -5.630655397806e-01, 2.029173329693e-04, 5.7507e-01, 1.4990e-02, + 2DIAGNOSTIC, 14, -5.631515694366e-01, 1.606677884277e-04, 5.8688e-01, 1.1809e-02, + 2DIAGNOSTIC, 15, -5.632200929700e-01, 1.206699124822e-04, 5.9787e-01, 1.0987e-02, + 2DIAGNOSTIC, 16, -5.632884331636e-01, 9.120757244598e-05, 6.0830e-01, 1.0428e-02, + 2DIAGNOSTIC, 17, -5.634239770940e-01, 7.227484603115e-05, 6.1887e-01, 1.0568e-02, + 2DIAGNOSTIC, 18, -5.635968386331e-01, 6.430155550417e-05, 6.3748e-01, 1.8614e-02, + 2DIAGNOSTIC, 19, -5.636372534858e-01, 5.876616480919e-05, 6.5003e-01, 1.2552e-02, + 2DIAGNOSTIC, 20, -5.636404046703e-01, 5.258293365891e-05, 6.6308e-01, 1.3052e-02, + 2DIAGNOSTIC, 21, -5.636572346635e-01, 4.506313829393e-05, 6.7698e-01, 1.3898e-02, + 2DIAGNOSTIC, 22, -5.636765830409e-01, 3.680798939855e-05, 6.9324e-01, 1.6255e-02, + 2DIAGNOSTIC, 23, -5.636832366988e-01, 2.988341141569e-05, 7.0641e-01, 1.3171e-02, + 2DIAGNOSTIC, 24, -5.636804546757e-01, 2.261951349984e-05, 7.1935e-01, 1.2946e-02, + 2DIAGNOSTIC, 25, -5.636768937075e-01, 1.530615756093e-05, 7.3144e-01, 1.2084e-02, + 2DIAGNOSTIC, 26, -5.636751693358e-01, 8.505283882430e-06, 7.4476e-01, 1.3322e-02, + 2DIAGNOSTIC, 27, -5.636747564482e-01, 3.960520480448e-06, 7.5695e-01, 1.2193e-02, + 2DIAGNOSTIC, 28, -5.636840144274e-01, 2.744507966272e-06, 7.6856e-01, 1.1608e-02, + 2DIAGNOSTIC, 29, -5.636993652875e-01, 2.434923896767e-06, 7.7966e-01, 1.1100e-02, + 2DIAGNOSTIC, 30, -5.637333030126e-01, 2.637348694753e-06, 7.9181e-01, 1.2151e-02, + 2DIAGNOSTIC, 31, -5.637742227727e-01, 3.600262710110e-06, 8.0288e-01, 1.1069e-02, + 2DIAGNOSTIC, 32, -5.638496323581e-01, 5.741587737064e-06, 8.1387e-01, 1.0994e-02, + 2DIAGNOSTIC, 33, -5.644949166580e-01, 1.725752209999e-05, 8.2775e-01, 1.3875e-02, + 2DIAGNOSTIC, 34, -5.645630143879e-01, 2.726159425737e-05, 8.3857e-01, 1.0825e-02, + 2DIAGNOSTIC, 35, -5.647110764788e-01, 3.636852479582e-05, 8.5520e-01, 1.6629e-02, + 2DIAGNOSTIC, 36, -5.648511396364e-01, 4.362522958744e-05, 8.6749e-01, 1.2283e-02, + 2DIAGNOSTIC, 37, -5.648785100696e-01, 4.672759765218e-05, 8.7828e-01, 1.0790e-02, + 2DIAGNOSTIC, 38, -5.648877404789e-01, 4.544462883537e-05, 8.8907e-01, 1.0794e-02, + 2DIAGNOSTIC, 39, -5.649256710989e-01, 4.065283744868e-05, 8.9971e-01, 1.0636e-02, + 2DIAGNOSTIC, 40, -5.649989636762e-01, 3.373670491821e-05, 9.1159e-01, 1.1889e-02, + 2DIAGNOSTIC, 41, -5.651275041751e-01, 2.612855719170e-05, 9.2209e-01, 1.0497e-02, + 2DIAGNOSTIC, 42, -5.652919108917e-01, 1.912233273044e-05, 9.3410e-01, 1.2013e-02, + 2DIAGNOSTIC, 43, -5.653243959972e-01, 1.863807551451e-05, 9.4828e-01, 1.4174e-02, + 2DIAGNOSTIC, 44, -5.653460672626e-01, 1.749549705303e-05, 9.5840e-01, 1.0121e-02, + 2DIAGNOSTIC, 45, -5.653905713345e-01, 1.692554384468e-05, 9.6999e-01, 1.1589e-02, + 2DIAGNOSTIC, 46, -5.654888282065e-01, 1.740243901467e-05, 9.8010e-01, 1.0114e-02, + 2DIAGNOSTIC, 47, -5.656469365102e-01, 1.820770175388e-05, 9.9339e-01, 1.3289e-02, + 2DIAGNOSTIC, 48, -5.657576758103e-01, 1.854022829695e-05, 1.0063e+00, 1.2953e-02, + 2DIAGNOSTIC, 49, -5.658562015741e-01, 1.856932419867e-05, 1.0176e+00, 1.1305e-02, + 2DIAGNOSTIC, 50, -5.658632960564e-01, 1.767752391025e-05, 1.0290e+00, 1.1334e-02, + 2DIAGNOSTIC, 51, -5.658602665676e-01, 1.639216103693e-05, 1.0405e+00, 1.1484e-02, + 2DIAGNOSTIC, 52, -5.658750375204e-01, 1.536545594989e-05, 1.0518e+00, 1.1343e-02, + 2DIAGNOSTIC, 53, -5.658786429490e-01, 1.328954253650e-05, 1.0631e+00, 1.1255e-02, + 2DIAGNOSTIC, 54, -5.658581434195e-01, 1.008762602884e-05, 1.0744e+00, 1.1328e-02, + 2DIAGNOSTIC, 55, -5.658705396016e-01, 6.623846525184e-06, 1.0861e+00, 1.1728e-02, + 2DIAGNOSTIC, 56, -5.658504877684e-01, 3.388032970477e-06, 1.0965e+00, 1.0420e-02, + 2DIAGNOSTIC, 57, -5.658563009635e-01, 1.429358635376e-06, 1.1085e+00, 1.2000e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.740378765121e-01, 1.797693134862e+308, 1.2850e+00, 1.7644e-01, + Elapsed time (stage 0): 1.3143e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -1.035658852149e+00, 1.797693134862e+308, 3.5966e-02, 3.5965e-02, + 2DIAGNOSTIC, 2, -1.038060033757e+00, 1.797693134862e+308, 3.7203e-02, 1.2369e-03, + 2DIAGNOSTIC, 3, -1.041995554734e+00, 1.797693134862e+308, 3.8633e-02, 1.4300e-03, + 2DIAGNOSTIC, 4, -1.044611475694e+00, 1.797693134862e+308, 3.9839e-02, 1.2062e-03, + 2DIAGNOSTIC, 5, -1.047004351117e+00, 1.797693134862e+308, 4.1280e-02, 1.4410e-03, + 2DIAGNOSTIC, 6, -1.047593603736e+00, 1.797693134862e+308, 4.2490e-02, 1.2100e-03, + 2DIAGNOSTIC, 7, -1.051442935778e+00, 1.797693134862e+308, 4.3971e-02, 1.4811e-03, + 2DIAGNOSTIC, 8, -1.058255801964e+00, 1.797693134862e+308, 4.5369e-02, 1.3978e-03, + 2DIAGNOSTIC, 9, -1.060738110643e+00, 1.797693134862e+308, 4.6526e-02, 1.1570e-03, + 2DIAGNOSTIC, 10, -1.061580995808e+00, 1.641109293248e-03, 4.8026e-02, 1.5001e-03, + 2DIAGNOSTIC, 11, -1.064308819999e+00, 1.493180357879e-03, 5.0102e-02, 2.0759e-03, + 2DIAGNOSTIC, 12, -1.066902128648e+00, 1.345318267883e-03, 5.2097e-02, 1.9948e-03, + 2DIAGNOSTIC, 13, -1.067264556350e+00, 1.184434739887e-03, 5.3384e-02, 1.2870e-03, + 2DIAGNOSTIC, 14, -1.069757218532e+00, 1.037740638301e-03, 5.4629e-02, 1.2448e-03, + 2DIAGNOSTIC, 15, -1.075556538114e+00, 9.646910362846e-04, 5.6431e-02, 1.8022e-03, + 2DIAGNOSTIC, 16, -1.076867763710e+00, 8.416884115950e-04, 5.7913e-02, 1.4820e-03, + 2DIAGNOSTIC, 17, -1.076570547903e+00, 7.102288266317e-04, 5.9788e-02, 1.8749e-03, + 2DIAGNOSTIC, 18, -1.077476196939e+00, 6.444536367279e-04, 6.1070e-02, 1.2820e-03, + 2DIAGNOSTIC, 19, -1.077120279020e+00, 5.559213178007e-04, 6.2400e-02, 1.3301e-03, + 2DIAGNOSTIC, 20, -1.076622228686e+00, 4.277150939037e-04, 6.3726e-02, 1.3258e-03, + 2DIAGNOSTIC, 21, -1.078009002117e+00, 3.240595924268e-04, 6.5244e-02, 1.5180e-03, + 2DIAGNOSTIC, 22, -1.082230385245e+00, 2.834144313140e-04, 6.7182e-02, 1.9381e-03, + 2DIAGNOSTIC, 23, -1.081850985230e+00, 2.185928372988e-04, 6.8806e-02, 1.6241e-03, + 2DIAGNOSTIC, 24, -1.080882103898e+00, 1.551409941847e-04, 7.0142e-02, 1.3359e-03, + 2DIAGNOSTIC, 25, -1.080147698838e+00, 1.372388601547e-04, 7.1686e-02, 1.5440e-03, + 2DIAGNOSTIC, 26, -1.080625380739e+00, 1.260953518814e-04, 7.3006e-02, 1.3201e-03, + 2DIAGNOSTIC, 27, -1.080049504449e+00, 9.391692265860e-05, 7.4522e-02, 1.5159e-03, + 2DIAGNOSTIC, 28, -1.081170587177e+00, 7.491001026991e-05, 7.5862e-02, 1.3402e-03, + 2DIAGNOSTIC, 29, -1.081026909996e+00, 4.649925273203e-05, 7.7545e-02, 1.6830e-03, + 2DIAGNOSTIC, 30, -1.088011657304e+00, 7.351314490895e-05, 7.9517e-02, 1.9720e-03, + 2DIAGNOSTIC, 31, -1.110184174886e+00, 2.910671201503e-04, 8.1699e-02, 2.1820e-03, + 2DIAGNOSTIC, 32, -1.123052180087e+00, 6.039898029844e-04, 8.4438e-02, 2.7390e-03, + 2DIAGNOSTIC, 33, -1.132673469184e+00, 9.141079570254e-04, 8.6173e-02, 1.7350e-03, + 2DIAGNOSTIC, 34, -1.139194910579e+00, 1.163234127421e-03, 8.7720e-02, 1.5471e-03, + 2DIAGNOSTIC, 35, -1.145563485842e+00, 1.328840135144e-03, 9.0028e-02, 2.3081e-03, + 2DIAGNOSTIC, 36, -1.147046571763e+00, 1.370227565474e-03, 9.1601e-02, 1.5728e-03, + 2DIAGNOSTIC, 37, -1.149215752823e+00, 1.289578175073e-03, 9.2951e-02, 1.3499e-03, + 2DIAGNOSTIC, 38, -1.152477650277e+00, 1.123003621885e-03, 9.4414e-02, 1.4629e-03, + 2DIAGNOSTIC, 39, -1.156143292867e+00, 8.827671748254e-04, 9.6337e-02, 1.9228e-03, + 2DIAGNOSTIC, 40, -1.159145188618e+00, 6.334272299473e-04, 9.8087e-02, 1.7500e-03, + 2DIAGNOSTIC, 41, -1.161775271006e+00, 4.935649407956e-04, 9.9836e-02, 1.7490e-03, + 2DIAGNOSTIC, 42, -1.166511745977e+00, 4.223158435643e-04, 1.0181e-01, 1.9748e-03, + 2DIAGNOSTIC, 43, -1.167890603993e+00, 3.796769114978e-04, 1.0355e-01, 1.7409e-03, + 2DIAGNOSTIC, 44, -1.171740296843e+00, 3.632752923698e-04, 1.0555e-01, 1.9979e-03, + 2DIAGNOSTIC, 45, -1.182345921318e+00, 4.105243782506e-04, 1.0719e-01, 1.6429e-03, + 2DIAGNOSTIC, 46, -1.198602157161e+00, 5.146034967726e-04, 1.0917e-01, 1.9779e-03, + 2DIAGNOSTIC, 47, -1.203330676131e+00, 6.005943189730e-04, 1.1099e-01, 1.8232e-03, + 2DIAGNOSTIC, 48, -1.205325852713e+00, 6.543671422207e-04, 1.1262e-01, 1.6258e-03, + 2DIAGNOSTIC, 49, -1.211550609792e+00, 6.960355295740e-04, 1.1419e-01, 1.5728e-03, + 2DIAGNOSTIC, 50, -1.217249358760e+00, 7.122950748691e-04, 1.1559e-01, 1.4021e-03, + 2DIAGNOSTIC, 51, -1.220069270775e+00, 6.848745661874e-04, 1.1804e-01, 2.4450e-03, + 2DIAGNOSTIC, 52, -1.220426282529e+00, 6.187504739681e-04, 1.1936e-01, 1.3170e-03, + 2DIAGNOSTIC, 53, -1.220971482790e+00, 5.069833104071e-04, 1.2065e-01, 1.2939e-03, + 2DIAGNOSTIC, 54, -1.221471129604e+00, 3.711378749908e-04, 1.2195e-01, 1.2960e-03, + 2DIAGNOSTIC, 55, -1.221788342166e+00, 2.533515398316e-04, 1.2327e-01, 1.3220e-03, + 2DIAGNOSTIC, 56, -1.222054418980e+00, 1.905269996823e-04, 1.2460e-01, 1.3349e-03, + 2DIAGNOSTIC, 57, -1.222637866048e+00, 1.359475546685e-04, 1.2612e-01, 1.5218e-03, + 2DIAGNOSTIC, 58, -1.223115727473e+00, 8.085502538873e-05, 1.2902e-01, 2.8980e-03, + 2DIAGNOSTIC, 59, -1.223123160806e+00, 4.620442553851e-05, 1.3050e-01, 1.4791e-03, + 2DIAGNOSTIC, 60, -1.223161946024e+00, 3.231170240376e-05, 1.3256e-01, 2.0611e-03, + 2DIAGNOSTIC, 61, -1.223214468967e+00, 2.774874658115e-05, 1.3447e-01, 1.9050e-03, + 2DIAGNOSTIC, 62, -1.223278774484e+00, 2.237045799281e-05, 1.3621e-01, 1.7428e-03, + 2DIAGNOSTIC, 63, -1.223351592913e+00, 1.747813022908e-05, 1.3766e-01, 1.4451e-03, + 2DIAGNOSTIC, 64, -1.223422659689e+00, 1.336619800198e-05, 1.3909e-01, 1.4291e-03, + 2DIAGNOSTIC, 65, -1.223494425021e+00, 9.681471059304e-06, 1.4078e-01, 1.6911e-03, + 2DIAGNOSTIC, 66, -1.223607568159e+00, 6.629536056717e-06, 1.4269e-01, 1.9150e-03, + 2DIAGNOSTIC, 67, -1.223630400823e+00, 5.292753441841e-06, 1.4538e-01, 2.6920e-03, + 2DIAGNOSTIC, 68, -1.223634121814e+00, 5.312383324216e-06, 1.4771e-01, 2.3260e-03, + 2DIAGNOSTIC, 69, -1.223640927914e+00, 4.922876846506e-06, 1.5002e-01, 2.3119e-03, + 2DIAGNOSTIC, 70, -1.223649458096e+00, 4.283075309697e-06, 1.5235e-01, 2.3270e-03, + 2DIAGNOSTIC, 71, -1.223671291331e+00, 3.550228720735e-06, 1.5473e-01, 2.3861e-03, + 2DIAGNOSTIC, 72, -1.223680049153e+00, 2.791436581412e-06, 1.5632e-01, 1.5891e-03, + 2DIAGNOSTIC, 73, -1.223681667395e+00, 2.087187840205e-06, 1.5790e-01, 1.5731e-03, + 2DIAGNOSTIC, 74, -1.223684420863e+00, 1.494586767894e-06, 1.5950e-01, 1.6060e-03, + 2DIAGNOSTIC, 75, -1.223692679272e+00, 1.073659276901e-06, 1.6248e-01, 2.9740e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.026384477455e-01, 1.797693134862e+308, 2.0723e-01, 4.4750e-02, + 2DIAGNOSTIC, 2, -8.022706433001e-01, 1.797693134862e+308, 2.1013e-01, 2.9049e-03, + 2DIAGNOSTIC, 3, -8.034347136763e-01, 1.797693134862e+308, 2.1304e-01, 2.9089e-03, + 2DIAGNOSTIC, 4, -8.050243066335e-01, 1.797693134862e+308, 2.1555e-01, 2.5141e-03, + 2DIAGNOSTIC, 5, -8.088190108147e-01, 1.797693134862e+308, 2.1769e-01, 2.1369e-03, + 2DIAGNOSTIC, 6, -8.108073131864e-01, 1.797693134862e+308, 2.1987e-01, 2.1832e-03, + 2DIAGNOSTIC, 7, -8.144209355757e-01, 1.797693134862e+308, 2.2240e-01, 2.5251e-03, + 2DIAGNOSTIC, 8, -8.178683264250e-01, 1.797693134862e+308, 2.2490e-01, 2.5022e-03, + 2DIAGNOSTIC, 9, -8.195371298117e-01, 1.797693134862e+308, 2.2806e-01, 3.1540e-03, + 2DIAGNOSTIC, 10, -8.208190620381e-01, 1.690214806826e-03, 2.3413e-01, 6.0740e-03, + 2DIAGNOSTIC, 11, -8.207993227099e-01, 1.554333445592e-03, 2.3667e-01, 2.5399e-03, + 2DIAGNOSTIC, 12, -8.211534768508e-01, 1.302194309485e-03, 2.3940e-01, 2.7301e-03, + 2DIAGNOSTIC, 13, -8.217258757837e-01, 1.017701972838e-03, 2.4206e-01, 2.6641e-03, + 2DIAGNOSTIC, 14, -8.226466400630e-01, 7.425841027637e-04, 2.4467e-01, 2.6081e-03, + 2DIAGNOSTIC, 15, -8.237280851300e-01, 5.504285042980e-04, 2.4727e-01, 2.6011e-03, + 2DIAGNOSTIC, 16, -8.248460698060e-01, 3.988625098415e-04, 2.4977e-01, 2.5010e-03, + 2DIAGNOSTIC, 17, -8.259723303064e-01, 3.245192773720e-04, 2.5228e-01, 2.5101e-03, + 2DIAGNOSTIC, 18, -8.271758102178e-01, 3.177559184555e-04, 2.5514e-01, 2.8541e-03, + 2DIAGNOSTIC, 19, -8.275954028205e-01, 3.196684950715e-04, 2.5911e-01, 3.9701e-03, + 2DIAGNOSTIC, 20, -8.275798815215e-01, 3.140333038203e-04, 2.6165e-01, 2.5439e-03, + 2DIAGNOSTIC, 21, -8.278961443123e-01, 2.849153842418e-04, 2.6417e-01, 2.5139e-03, + 2DIAGNOSTIC, 22, -8.280955783703e-01, 2.404855702913e-04, 2.6705e-01, 2.8880e-03, + 2DIAGNOSTIC, 23, -8.281916571207e-01, 1.873449796103e-04, 2.7011e-01, 3.0580e-03, + 2DIAGNOSTIC, 24, -8.282843278036e-01, 1.358226421099e-04, 2.7602e-01, 5.9052e-03, + 2DIAGNOSTIC, 25, -8.282609163960e-01, 9.052468869554e-05, 2.7865e-01, 2.6309e-03, + 2DIAGNOSTIC, 26, -8.282715627696e-01, 5.522220274905e-05, 2.8114e-01, 2.4891e-03, + 2DIAGNOSTIC, 27, -8.282889560429e-01, 3.172163174905e-05, 2.8363e-01, 2.4900e-03, + 2DIAGNOSTIC, 28, -8.283166593797e-01, 2.213704779503e-05, 2.8614e-01, 2.5160e-03, + 2DIAGNOSTIC, 29, -8.283853406316e-01, 1.713071822380e-05, 2.8868e-01, 2.5411e-03, + 2DIAGNOSTIC, 30, -8.284470790669e-01, 1.140539752736e-05, 2.9147e-01, 2.7812e-03, + 2DIAGNOSTIC, 31, -8.284981533411e-01, 9.133950456590e-06, 2.9385e-01, 2.3870e-03, + 2DIAGNOSTIC, 32, -8.285441618562e-01, 8.869743079912e-06, 2.9659e-01, 2.7370e-03, + 2DIAGNOSTIC, 33, -8.286136762390e-01, 9.577088069562e-06, 2.9899e-01, 2.3971e-03, + 2DIAGNOSTIC, 34, -8.286879714629e-01, 1.111343405767e-05, 3.0140e-01, 2.4121e-03, + 2DIAGNOSTIC, 35, -8.288541196428e-01, 1.298830460567e-05, 3.0388e-01, 2.4831e-03, + 2DIAGNOSTIC, 36, -8.291531433752e-01, 1.655400536638e-05, 3.0663e-01, 2.7511e-03, + 2DIAGNOSTIC, 37, -8.296845144841e-01, 2.350767153093e-05, 3.0967e-01, 3.0351e-03, + 2DIAGNOSTIC, 38, -8.298501024923e-01, 2.959425740123e-05, 3.1205e-01, 2.3851e-03, + 2DIAGNOSTIC, 39, -8.299401712422e-01, 3.406767852402e-05, 3.1502e-01, 2.9709e-03, + 2DIAGNOSTIC, 40, -8.300285405593e-01, 3.647668083392e-05, 3.1773e-01, 2.7049e-03, + 2DIAGNOSTIC, 41, -8.300504550079e-01, 3.593017405371e-05, 3.2040e-01, 2.6691e-03, + 2DIAGNOSTIC, 42, -8.300558219220e-01, 3.241751416312e-05, 3.2280e-01, 2.4002e-03, + 2DIAGNOSTIC, 43, -8.300786773369e-01, 2.679653192980e-05, 3.2517e-01, 2.3739e-03, + 2DIAGNOSTIC, 44, -8.301403588675e-01, 2.004709116214e-05, 3.2753e-01, 2.3601e-03, + 2DIAGNOSTIC, 45, -8.302026352015e-01, 1.348234665018e-05, 3.3018e-01, 2.6510e-03, + 2DIAGNOSTIC, 46, -8.303192083526e-01, 9.000895893334e-06, 3.3287e-01, 2.6870e-03, + 2DIAGNOSTIC, 47, -8.303476151679e-01, 7.994251938041e-06, 3.3618e-01, 3.3050e-03, + 2DIAGNOSTIC, 48, -8.304133614969e-01, 7.989974220638e-06, 3.3916e-01, 2.9879e-03, + 2DIAGNOSTIC, 49, -8.304405752675e-01, 8.087129180490e-06, 3.4155e-01, 2.3880e-03, + 2DIAGNOSTIC, 50, -8.304608012496e-01, 8.206683469261e-06, 3.4423e-01, 2.6801e-03, + 2DIAGNOSTIC, 51, -8.304880149421e-01, 7.925634870162e-06, 3.4688e-01, 2.6500e-03, + 2DIAGNOSTIC, 52, -8.304642043944e-01, 6.832262458113e-06, 3.5459e-01, 7.7050e-03, + 2DIAGNOSTIC, 53, -8.304642043847e-01, 5.338392892670e-06, 3.6236e-01, 7.7751e-03, + 2DIAGNOSTIC, 54, -8.304642043847e-01, 3.835846785916e-06, 3.6540e-01, 3.0379e-03, + 2DIAGNOSTIC, 55, -8.304642043847e-01, 2.449022271582e-06, 3.6849e-01, 3.0880e-03, + 2DIAGNOSTIC, 56, -8.304642043847e-01, 1.649573052338e-06, 3.7123e-01, 2.7421e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.144517357451e-01, 1.797693134862e+308, 4.3417e-01, 6.2945e-02, + 2DIAGNOSTIC, 2, -6.149959438196e-01, 1.797693134862e+308, 4.4731e-01, 1.3133e-02, + 2DIAGNOSTIC, 3, -6.158067440281e-01, 1.797693134862e+308, 4.5989e-01, 1.2582e-02, + 2DIAGNOSTIC, 4, -6.168611352897e-01, 1.797693134862e+308, 4.7259e-01, 1.2697e-02, + 2DIAGNOSTIC, 5, -6.179676052982e-01, 1.797693134862e+308, 4.8535e-01, 1.2767e-02, + 2DIAGNOSTIC, 6, -6.190017808675e-01, 1.797693134862e+308, 4.9838e-01, 1.3025e-02, + 2DIAGNOSTIC, 7, -6.196419178736e-01, 1.797693134862e+308, 5.1583e-01, 1.7452e-02, + 2DIAGNOSTIC, 8, -6.197664603990e-01, 1.797693134862e+308, 5.2836e-01, 1.2532e-02, + 2DIAGNOSTIC, 9, -6.198385293595e-01, 1.797693134862e+308, 5.4076e-01, 1.2397e-02, + 2DIAGNOSTIC, 10, -6.199279821747e-01, 6.451818416637e-04, 5.5441e-01, 1.3652e-02, + 2DIAGNOSTIC, 11, -6.199592778241e-01, 4.878385687778e-04, 5.7216e-01, 1.7751e-02, + 2DIAGNOSTIC, 12, -6.199730310244e-01, 3.344599061489e-04, 5.8622e-01, 1.4057e-02, + 2DIAGNOSTIC, 13, -6.199794931579e-01, 2.035662322272e-04, 5.9854e-01, 1.2317e-02, + 2DIAGNOSTIC, 14, -6.200111481480e-01, 1.084650011557e-04, 6.1131e-01, 1.2770e-02, + 2DIAGNOSTIC, 15, -6.200947047536e-01, 5.214725904415e-05, 6.2911e-01, 1.7799e-02, + 2DIAGNOSTIC, 16, -6.201524906785e-01, 2.912121952868e-05, 6.4366e-01, 1.4555e-02, + 2DIAGNOSTIC, 17, -6.202597814081e-01, 2.646093801819e-05, 6.5797e-01, 1.4306e-02, + 2DIAGNOSTIC, 18, -6.203712812360e-01, 2.780311219354e-05, 6.7046e-01, 1.2490e-02, + 2DIAGNOSTIC, 19, -6.205003857052e-01, 3.136168967594e-05, 6.8315e-01, 1.2690e-02, + 2DIAGNOSTIC, 20, -6.205833812325e-01, 3.569592342526e-05, 6.9571e-01, 1.2568e-02, + 2DIAGNOSTIC, 21, -6.206864726660e-01, 3.936657094593e-05, 7.1169e-01, 1.5973e-02, + 2DIAGNOSTIC, 22, -6.207585251141e-01, 4.094403581478e-05, 7.2961e-01, 1.7921e-02, + 2DIAGNOSTIC, 23, -6.207878940410e-01, 3.938027673424e-05, 7.4256e-01, 1.2954e-02, + 2DIAGNOSTIC, 24, -6.208667268534e-01, 3.647644784059e-05, 7.5577e-01, 1.3208e-02, + 2DIAGNOSTIC, 25, -6.209082320314e-01, 3.277237901743e-05, 7.6894e-01, 1.3169e-02, + 2DIAGNOSTIC, 26, -6.209882911950e-01, 2.879406901672e-05, 7.8154e-01, 1.2605e-02, + 2DIAGNOSTIC, 27, -6.211535488324e-01, 2.710292100493e-05, 7.9931e-01, 1.7771e-02, + 2DIAGNOSTIC, 28, -6.211801068203e-01, 2.526523547842e-05, 8.1379e-01, 1.4471e-02, + 2DIAGNOSTIC, 29, -6.212303524464e-01, 2.412840991958e-05, 8.2821e-01, 1.4428e-02, + 2DIAGNOSTIC, 30, -6.213642201070e-01, 2.418516574788e-05, 8.4225e-01, 1.4037e-02, + 2DIAGNOSTIC, 31, -6.213939507986e-01, 2.393551550581e-05, 8.5633e-01, 1.4079e-02, + 2DIAGNOSTIC, 32, -6.214165467216e-01, 2.287560548287e-05, 8.6867e-01, 1.2342e-02, + 2DIAGNOSTIC, 33, -6.214346353618e-01, 2.046691315266e-05, 8.8127e-01, 1.2599e-02, + 2DIAGNOSTIC, 34, -6.214458574028e-01, 1.758041888134e-05, 8.9379e-01, 1.2521e-02, + 2DIAGNOSTIC, 35, -6.214696712125e-01, 1.410525109271e-05, 9.0951e-01, 1.5719e-02, + 2DIAGNOSTIC, 36, -6.215187151794e-01, 1.115001867489e-05, 9.3191e-01, 2.2397e-02, + 2DIAGNOSTIC, 37, -6.215195559962e-01, 9.442552366283e-06, 9.4378e-01, 1.1872e-02, + 2DIAGNOSTIC, 38, -6.215212241655e-01, 7.362689786867e-06, 9.5568e-01, 1.1897e-02, + 2DIAGNOSTIC, 39, -6.215235566657e-01, 5.354236832237e-06, 9.6797e-01, 1.2293e-02, + 2DIAGNOSTIC, 40, -6.215265304549e-01, 4.570855416362e-06, 9.8117e-01, 1.3197e-02, + 2DIAGNOSTIC, 41, -6.215291059603e-01, 3.813396009002e-06, 9.9383e-01, 1.2660e-02, + 2DIAGNOSTIC, 42, -6.215345381875e-01, 3.105853532297e-06, 1.0077e+00, 1.3866e-02, + 2DIAGNOSTIC, 43, -6.215440416012e-01, 2.508040336687e-06, 1.0243e+00, 1.6559e-02, + 2DIAGNOSTIC, 44, -6.215443234379e-01, 1.885269875431e-06, 1.0362e+00, 1.1956e-02, + 2DIAGNOSTIC, 45, -6.215445931888e-01, 1.411784850792e-06, 1.0756e+00, 3.9406e-02, + 2DIAGNOSTIC, 46, -6.215445931849e-01, 1.381205176874e-06, 1.1161e+00, 4.0444e-02, + 2DIAGNOSTIC, 47, -6.215445931849e-01, 1.293254759969e-06, 1.1305e+00, 1.4456e-02, + 2DIAGNOSTIC, 48, -6.215445931849e-01, 1.164397104372e-06, 1.1466e+00, 1.6123e-02, + 2DIAGNOSTIC, 49, -6.215445931849e-01, 1.014601485900e-06, 1.1615e+00, 1.4846e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.032260086856e-01, 1.797693134862e+308, 1.3628e+00, 2.0128e-01, + Elapsed time (stage 1): 1.3836e+00 + + +Total elapsed time: 2.6990e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:45:45 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 45 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 77 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 90.05% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 90.05% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[14038 21190 23780 9438 7577 645 0 18404 16308 10340 13019 1769 + 19365 1684 5669 1924 2931 228 234 470 283 578 2146 1019 + 234 2798 1750 1432 768 750 784 249 433 236 506 796 + 201 498 217 537 496 525 277 471 197] +[147499 125247 121666 60175 65082 27201 22239 36821 40017 48802 + 42437 41809 25340 28900 23026 23492 17515 16530 13434 16597 + 8815 10699 9991 8629 8636 10144 8862 9331 2834 6300 + 6374 7945 6116 7074 5839 5985 6074 5207 5391 7218 + 5942 5344 4605 5823 2165] +[ 261 202 4474 201 412 2783 16065 3950 440 0 0 697 + 16624 417 688 885 433 1920 1286 0 200 507 0 22278 + 633 13867 0 0 485 0 212 36357 14236 3811 1192 0 + 17231 2102 6717 1658 244 0 485 9609 701] +[ 25533 9164 3084 9961 9704 41882 6837 46045 7929 2643 + 10521 22084 3618 3818 6151 7720 16111 37340 9772 2099 + 6777 6519 5192 120878 11629 152835 9219 11058 2583 5468 + 6447 7456 143268 6279 20310 5967 3320 49267 5152 46235 + 21084 10420 6269 2187 12103] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:57:17 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:57:22 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:11 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:11 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:22 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:26 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC001 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:39 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:02:04 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:03:56 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:03:57 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:05:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:05:21 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5600f804cd20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.5131, 116.418, -134.291] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f7ec3730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4f81d17010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5600f8050020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.749, 56.4089, -118.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f80560c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4f7e658010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5600f8066840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.5131, 116.418, -134.291] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f8052890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4f79984010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5600f806a3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.749, 56.4089, -118.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f8059130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4f762c5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.542870470039e-01, 1.797693134862e+308, 2.2696e-01, 2.2696e-01, + 2DIAGNOSTIC, 2, -5.551591374351e-01, 1.797693134862e+308, 2.2828e-01, 1.3220e-03, + 2DIAGNOSTIC, 3, -5.582031995662e-01, 1.797693134862e+308, 2.2951e-01, 1.2290e-03, + 2DIAGNOSTIC, 4, -5.609258788583e-01, 1.797693134862e+308, 2.3066e-01, 1.1511e-03, + 2DIAGNOSTIC, 5, -5.625864910145e-01, 1.797693134862e+308, 2.3213e-01, 1.4670e-03, + 2DIAGNOSTIC, 6, -5.637661434345e-01, 1.797693134862e+308, 2.3357e-01, 1.4429e-03, + 2DIAGNOSTIC, 7, -5.649797919651e-01, 1.797693134862e+308, 2.3487e-01, 1.2989e-03, + 2DIAGNOSTIC, 8, -5.675111377196e-01, 1.797693134862e+308, 2.3619e-01, 1.3220e-03, + 2DIAGNOSTIC, 9, -5.949152079192e-01, 1.797693134862e+308, 2.3785e-01, 1.6620e-03, + 2DIAGNOSTIC, 10, -6.159382037310e-01, 5.240270175826e-03, 2.3974e-01, 1.8852e-03, + 2DIAGNOSTIC, 11, -6.402624941624e-01, 7.262434482414e-03, 2.4176e-01, 2.0161e-03, + 2DIAGNOSTIC, 12, -6.463833954309e-01, 8.543566275168e-03, 2.4418e-01, 2.4271e-03, + 2DIAGNOSTIC, 13, -6.463312313949e-01, 8.964609706116e-03, 2.4583e-01, 1.6451e-03, + 2DIAGNOSTIC, 14, -6.481905387203e-01, 8.663921367717e-03, 2.4771e-01, 1.8799e-03, + 2DIAGNOSTIC, 15, -6.506787868402e-01, 7.735787946061e-03, 2.4972e-01, 2.0080e-03, + 2DIAGNOSTIC, 16, -6.517823569499e-01, 6.292112666002e-03, 2.5168e-01, 1.9650e-03, + 2DIAGNOSTIC, 17, -6.546707451814e-01, 4.580969935004e-03, 2.5429e-01, 2.6131e-03, + 2DIAGNOSTIC, 18, -6.554569760034e-01, 2.735894991881e-03, 2.5640e-01, 2.1050e-03, + 2DIAGNOSTIC, 19, -6.561347895697e-01, 1.533687915771e-03, 2.5819e-01, 1.7891e-03, + 2DIAGNOSTIC, 20, -6.580310440634e-01, 8.376494466133e-04, 2.6002e-01, 1.8291e-03, + 2DIAGNOSTIC, 21, -6.618331926091e-01, 7.515925527411e-04, 2.6165e-01, 1.6320e-03, + 2DIAGNOSTIC, 22, -6.804062627848e-01, 1.119967000515e-03, 2.6395e-01, 2.2960e-03, + 2DIAGNOSTIC, 23, -6.805172612667e-01, 1.340394499517e-03, 2.6538e-01, 1.4341e-03, + 2DIAGNOSTIC, 24, -6.824643516788e-01, 1.492842133616e-03, 2.6711e-01, 1.7259e-03, + 2DIAGNOSTIC, 25, -6.834474559453e-01, 1.559546459567e-03, 2.6889e-01, 1.7869e-03, + 2DIAGNOSTIC, 26, -6.830735468055e-01, 1.483807447206e-03, 2.7045e-01, 1.5621e-03, + 2DIAGNOSTIC, 27, -6.827329427987e-01, 1.313411222418e-03, 2.7203e-01, 1.5750e-03, + 2DIAGNOSTIC, 28, -6.831101629636e-01, 1.051664494469e-03, 2.7380e-01, 1.7710e-03, + 2DIAGNOSTIC, 29, -6.833915920335e-01, 7.290431984666e-04, 2.7536e-01, 1.5550e-03, + 2DIAGNOSTIC, 30, -6.830651571619e-01, 3.857300759211e-04, 2.7691e-01, 1.5502e-03, + 2DIAGNOSTIC, 31, -6.834420655286e-01, 8.334720494712e-05, 2.7864e-01, 1.7331e-03, + 2DIAGNOSTIC, 32, -6.854048782038e-01, 8.033450990406e-05, 2.8123e-01, 2.5940e-03, + 2DIAGNOSTIC, 33, -6.871175849136e-01, 9.308775372027e-05, 2.8272e-01, 1.4920e-03, + 2DIAGNOSTIC, 34, -6.879087709730e-01, 1.312712444469e-04, 2.8437e-01, 1.6479e-03, + 2DIAGNOSTIC, 35, -6.885655817637e-01, 1.761049440779e-04, 2.8618e-01, 1.8070e-03, + 2DIAGNOSTIC, 36, -6.902546724136e-01, 2.180993171340e-04, 2.8820e-01, 2.0161e-03, + 2DIAGNOSTIC, 37, -6.907064226691e-01, 2.373871603710e-04, 2.8987e-01, 1.6761e-03, + 2DIAGNOSTIC, 38, -6.912553026341e-01, 2.435282111104e-04, 2.9235e-01, 2.4800e-03, + 2DIAGNOSTIC, 39, -6.914732830335e-01, 2.323407217054e-04, 2.9406e-01, 1.7099e-03, + 2DIAGNOSTIC, 40, -6.912960351433e-01, 1.944964234811e-04, 2.9585e-01, 1.7860e-03, + 2DIAGNOSTIC, 41, -6.918639277683e-01, 1.498520997105e-04, 2.9824e-01, 2.3940e-03, + 2DIAGNOSTIC, 42, -6.915083665423e-01, 1.093882280002e-04, 2.9992e-01, 1.6761e-03, + 2DIAGNOSTIC, 43, -6.916362319316e-01, 7.942061847755e-05, 3.0156e-01, 1.6460e-03, + 2DIAGNOSTIC, 44, -6.912672369899e-01, 4.763099904968e-05, 3.0305e-01, 1.4842e-03, + 2DIAGNOSTIC, 45, -6.914709655691e-01, 2.092549374203e-05, 3.0563e-01, 2.5790e-03, + 2DIAGNOSTIC, 46, -6.915429426512e-01, 1.000337836275e-05, 3.0724e-01, 1.6119e-03, + 2DIAGNOSTIC, 47, -6.916097710273e-01, 3.312321126606e-06, 3.0888e-01, 1.6451e-03, + 2DIAGNOSTIC, 48, -6.919022565653e-01, 4.308957654558e-06, 3.1097e-01, 2.0900e-03, + 2DIAGNOSTIC, 49, -6.920618242478e-01, 8.299363888385e-06, 3.1263e-01, 1.6510e-03, + 2DIAGNOSTIC, 50, -6.921260708654e-01, 1.023381144749e-05, 3.1429e-01, 1.6611e-03, + 2DIAGNOSTIC, 51, -6.922573859892e-01, 1.717369512124e-05, 3.1618e-01, 1.8919e-03, + 2DIAGNOSTIC, 52, -6.915268315022e-01, 1.316040519252e-05, 3.1806e-01, 1.8790e-03, + 2DIAGNOSTIC, 53, -6.922667072856e-01, 1.543433758716e-05, 3.1970e-01, 1.6391e-03, + 2DIAGNOSTIC, 54, -7.061681633547e-01, 1.239486590985e-04, 3.2153e-01, 1.8320e-03, + 2DIAGNOSTIC, 55, -7.733974048639e-01, 7.398165870347e-04, 3.2346e-01, 1.9290e-03, + 2DIAGNOSTIC, 56, -8.257190991522e-01, 1.644502141127e-03, 3.2572e-01, 2.2628e-03, + 2DIAGNOSTIC, 57, -8.308570042005e-01, 2.387762354536e-03, 3.2764e-01, 1.9190e-03, + 2DIAGNOSTIC, 58, -8.358389247889e-01, 2.920020372670e-03, 3.2947e-01, 1.8260e-03, + 2DIAGNOSTIC, 59, -8.365621293359e-01, 3.158512269602e-03, 3.3154e-01, 2.0781e-03, + 2DIAGNOSTIC, 60, -8.375259552961e-01, 3.082945482603e-03, 3.3368e-01, 2.1338e-03, + 2DIAGNOSTIC, 61, -8.377774972853e-01, 2.711919901016e-03, 3.3552e-01, 1.8461e-03, + 2DIAGNOSTIC, 62, -8.373215105715e-01, 2.094158176683e-03, 3.3716e-01, 1.6379e-03, + 2DIAGNOSTIC, 63, -8.369224738020e-01, 1.309758083484e-03, 3.3870e-01, 1.5409e-03, + 2DIAGNOSTIC, 64, -8.359665318201e-01, 5.054949424255e-04, 3.4056e-01, 1.8580e-03, + 2DIAGNOSTIC, 65, -8.365672950445e-01, 1.052539508852e-04, 3.4236e-01, 1.8020e-03, + 2DIAGNOSTIC, 66, -8.375523687406e-01, 4.148420778402e-05, 3.4416e-01, 1.7979e-03, + 2DIAGNOSTIC, 67, -8.396652308388e-01, 1.960426657153e-05, 3.4577e-01, 1.6069e-03, + 2DIAGNOSTIC, 68, -8.529515160126e-01, 1.063609277914e-04, 3.4831e-01, 2.5480e-03, + 2DIAGNOSTIC, 69, -8.557756669347e-01, 1.987242730662e-04, 3.4993e-01, 1.6141e-03, + 2DIAGNOSTIC, 70, -8.573559081138e-01, 2.840610054970e-04, 3.5146e-01, 1.5340e-03, + 2DIAGNOSTIC, 71, -8.585026692646e-01, 3.481517260190e-04, 3.5300e-01, 1.5399e-03, + 2DIAGNOSTIC, 72, -8.649770631491e-01, 4.100759903472e-04, 3.5534e-01, 2.3389e-03, + 2DIAGNOSTIC, 73, -8.665995061090e-01, 4.354054685011e-04, 3.5687e-01, 1.5240e-03, + 2DIAGNOSTIC, 74, -8.668909493038e-01, 4.143274147133e-04, 3.5836e-01, 1.4930e-03, + 2DIAGNOSTIC, 75, -8.673057354780e-01, 3.610726615567e-04, 3.6002e-01, 1.6620e-03, + 2DIAGNOSTIC, 76, -8.681212530486e-01, 2.848643679198e-04, 3.6146e-01, 1.4410e-03, + 2DIAGNOSTIC, 77, -8.692809100400e-01, 1.982366752083e-04, 3.6358e-01, 2.1141e-03, + 2DIAGNOSTIC, 78, -8.704764400171e-01, 1.683214592192e-04, 3.6522e-01, 1.6410e-03, + 2DIAGNOSTIC, 79, -8.686337534261e-01, 1.283511187953e-04, 3.6687e-01, 1.6520e-03, + 2DIAGNOSTIC, 80, -8.768089455672e-01, 1.260766575696e-04, 3.6850e-01, 1.6339e-03, + 2DIAGNOSTIC, 81, -8.771169596057e-01, 1.168061740761e-04, 3.7015e-01, 1.6470e-03, + 2DIAGNOSTIC, 82, -8.809163212685e-01, 1.457301348594e-04, 3.7167e-01, 1.5171e-03, + 2DIAGNOSTIC, 83, -8.863382642146e-01, 1.930992154124e-04, 3.7350e-01, 1.8370e-03, + 2DIAGNOSTIC, 84, -9.088507232066e-01, 3.259231806863e-04, 3.7507e-01, 1.5690e-03, + 2DIAGNOSTIC, 85, -9.603553330000e-01, 6.576138000473e-04, 3.7678e-01, 1.7118e-03, + 2DIAGNOSTIC, 86, -9.909969625904e-01, 1.051584614045e-03, 3.7859e-01, 1.8070e-03, + 2DIAGNOSTIC, 87, -9.914194651643e-01, 1.339610169625e-03, 3.8052e-01, 1.9319e-03, + 2DIAGNOSTIC, 88, -9.981950855963e-01, 1.529569642385e-03, 3.8207e-01, 1.5421e-03, + 2DIAGNOSTIC, 89, -9.977193012177e-01, 1.554588944519e-03, 3.8347e-01, 1.4069e-03, + 2DIAGNOSTIC, 90, -1.002345812315e+00, 1.479641607986e-03, 3.8506e-01, 1.5891e-03, + 2DIAGNOSTIC, 91, -1.004565210230e+00, 1.273107360084e-03, 3.8694e-01, 1.8768e-03, + 2DIAGNOSTIC, 92, -1.007111731467e+00, 9.792043831519e-04, 3.8864e-01, 1.7021e-03, + 2DIAGNOSTIC, 93, -1.006333763763e+00, 6.197802949727e-04, 3.9002e-01, 1.3781e-03, + 2DIAGNOSTIC, 94, -1.006756816116e+00, 2.982199139432e-04, 3.9170e-01, 1.6861e-03, + 2DIAGNOSTIC, 95, -1.008119943018e+00, 1.618505065048e-04, 3.9323e-01, 1.5230e-03, + 2DIAGNOSTIC, 96, -1.009853714931e+00, 1.392146681717e-04, 3.9493e-01, 1.7002e-03, + 2DIAGNOSTIC, 97, -1.007941681191e+00, 9.733875754893e-05, 3.9816e-01, 3.2349e-03, + 2DIAGNOSTIC, 98, -1.008787191065e+00, 7.681393647377e-05, 3.9957e-01, 1.4040e-03, + 2DIAGNOSTIC, 99, -1.008135469123e+00, 4.490930063360e-05, 4.0104e-01, 1.4729e-03, + 2DIAGNOSTIC, 100, -1.009326769923e+00, 3.066597910253e-05, 4.0244e-01, 1.3959e-03, + 2DIAGNOSTIC, 101, -1.009571487116e+00, 2.234706258287e-05, 4.0405e-01, 1.6110e-03, + 2DIAGNOSTIC, 102, -1.009724931039e+00, 2.205375497411e-05, 4.0537e-01, 1.3242e-03, + 2DIAGNOSTIC, 103, -1.008996478230e+00, 1.450431724584e-05, 4.0670e-01, 1.3301e-03, + 2DIAGNOSTIC, 104, -1.009205042035e+00, 7.921400654037e-06, 4.0807e-01, 1.3719e-03, + 2DIAGNOSTIC, 105, -1.010380437877e+00, 9.232984820149e-06, 4.0945e-01, 1.3750e-03, + 2DIAGNOSTIC, 106, -1.010886271194e+00, 1.730967316462e-05, 4.1135e-01, 1.9019e-03, + 2DIAGNOSTIC, 107, -1.011004121207e+00, 1.747196984594e-05, 4.1337e-01, 2.0239e-03, + 2DIAGNOSTIC, 108, -1.011168752897e+00, 1.957711590721e-05, 4.1494e-01, 1.5650e-03, + 2DIAGNOSTIC, 109, -1.011370427540e+00, 1.819938177542e-05, 4.1637e-01, 1.4338e-03, + 2DIAGNOSTIC, 110, -1.013372448564e+00, 2.538835865801e-05, 4.1786e-01, 1.4839e-03, + 2DIAGNOSTIC, 111, -1.015931292372e+00, 3.876983688133e-05, 4.1993e-01, 2.0700e-03, + 2DIAGNOSTIC, 112, -1.016023006372e+00, 4.888838940675e-05, 4.2128e-01, 1.3552e-03, + 2DIAGNOSTIC, 113, -1.016060533141e+00, 5.214354920560e-05, 4.2288e-01, 1.5991e-03, + 2DIAGNOSTIC, 114, -1.016202838440e+00, 5.142226075982e-05, 4.2476e-01, 1.8780e-03, + 2DIAGNOSTIC, 115, -1.016332243484e+00, 4.961546201204e-05, 4.2621e-01, 1.4510e-03, + 2DIAGNOSTIC, 116, -1.016381923656e+00, 4.461789023205e-05, 4.2761e-01, 1.4050e-03, + 2DIAGNOSTIC, 117, -1.016447218263e+00, 3.605995951788e-05, 4.2915e-01, 1.5390e-03, + 2DIAGNOSTIC, 118, -1.016469557522e+00, 2.496142855262e-05, 4.3105e-01, 1.8978e-03, + 2DIAGNOSTIC, 119, -1.016494507258e+00, 1.230142085933e-05, 4.3252e-01, 1.4729e-03, + 2DIAGNOSTIC, 120, -1.016683092372e+00, 4.918266033360e-06, 4.3422e-01, 1.6911e-03, + 2DIAGNOSTIC, 121, -1.017950893625e+00, 8.266979790051e-06, 4.3587e-01, 1.6580e-03, + 2DIAGNOSTIC, 122, -1.017183948333e+00, 8.758458302813e-06, 4.3758e-01, 1.7071e-03, + 2DIAGNOSTIC, 123, -1.018218435933e+00, 1.156076082755e-05, 4.4277e-01, 5.1930e-03, + 2DIAGNOSTIC, 124, -1.018218431563e+00, 1.355687385521e-05, 4.4428e-01, 1.5109e-03, + 2DIAGNOSTIC, 125, -1.018218527999e+00, 1.456697780397e-05, 4.4559e-01, 1.3011e-03, + 2DIAGNOSTIC, 126, -1.018218691009e+00, 1.430398325657e-05, 4.4710e-01, 1.5140e-03, + 2DIAGNOSTIC, 127, -1.018218966477e+00, 1.288803006483e-05, 4.4843e-01, 1.3280e-03, + 2DIAGNOSTIC, 128, -1.018219431783e+00, 1.036288080082e-05, 4.4984e-01, 1.4079e-03, + 2DIAGNOSTIC, 129, -1.018220217156e+00, 6.962873585252e-06, 4.5133e-01, 1.4980e-03, + 2DIAGNOSTIC, 130, -1.018221543710e+00, 3.407406195114e-06, 4.5269e-01, 1.3530e-03, + 2DIAGNOSTIC, 131, -1.018223778824e+00, 3.028867042639e-06, 4.5417e-01, 1.4830e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.914815113364e-01, 1.797693134862e+308, 7.0719e-01, 2.5302e-01, + 2DIAGNOSTIC, 2, -8.910457929944e-01, 1.797693134862e+308, 7.0940e-01, 2.2111e-03, + 2DIAGNOSTIC, 3, -8.922840448763e-01, 1.797693134862e+308, 7.1147e-01, 2.0661e-03, + 2DIAGNOSTIC, 4, -8.936007482829e-01, 1.797693134862e+308, 7.1355e-01, 2.0781e-03, + 2DIAGNOSTIC, 5, -8.945820919261e-01, 1.797693134862e+308, 7.1555e-01, 2.0061e-03, + 2DIAGNOSTIC, 6, -8.952479694135e-01, 1.797693134862e+308, 7.1803e-01, 2.4781e-03, + 2DIAGNOSTIC, 7, -8.954573775974e-01, 1.797693134862e+308, 7.1994e-01, 1.9112e-03, + 2DIAGNOSTIC, 8, -8.970793551930e-01, 1.797693134862e+308, 7.2208e-01, 2.1398e-03, + 2DIAGNOSTIC, 9, -8.984467372141e-01, 1.797693134862e+308, 7.2482e-01, 2.7380e-03, + 2DIAGNOSTIC, 10, -9.001425979938e-01, 6.215070646621e-04, 7.2722e-01, 2.3980e-03, + 2DIAGNOSTIC, 11, -9.004771536709e-01, 6.059295973655e-04, 7.2960e-01, 2.3811e-03, + 2DIAGNOSTIC, 12, -9.007411901575e-01, 5.348243476703e-04, 7.3162e-01, 2.0261e-03, + 2DIAGNOSTIC, 13, -9.009518135648e-01, 4.614262802412e-04, 7.3366e-01, 2.0390e-03, + 2DIAGNOSTIC, 14, -9.026950915360e-01, 4.249914208951e-04, 7.3575e-01, 2.0909e-03, + 2DIAGNOSTIC, 15, -9.048076750063e-01, 4.187083115609e-04, 7.3844e-01, 2.6870e-03, + 2DIAGNOSTIC, 16, -9.052637464353e-01, 3.969626393259e-04, 7.4357e-01, 5.1310e-03, + 2DIAGNOSTIC, 17, -9.052643362402e-01, 3.459557380283e-04, 7.4572e-01, 2.1460e-03, + 2DIAGNOSTIC, 18, -9.052875704308e-01, 2.980663966852e-04, 7.4791e-01, 2.1961e-03, + 2DIAGNOSTIC, 19, -9.053218285349e-01, 2.499382049712e-04, 7.5007e-01, 2.1539e-03, + 2DIAGNOSTIC, 20, -9.053683588726e-01, 2.103760327385e-04, 7.5221e-01, 2.1439e-03, + 2DIAGNOSTIC, 21, -9.051882502624e-01, 1.575972736909e-04, 7.5441e-01, 2.2020e-03, + 2DIAGNOSTIC, 22, -9.052444456274e-01, 1.004480234986e-04, 7.5658e-01, 2.1620e-03, + 2DIAGNOSTIC, 23, -9.053013391153e-01, 4.242676242581e-05, 7.5874e-01, 2.1629e-03, + 2DIAGNOSTIC, 24, -9.053818584285e-01, 8.625116164403e-06, 7.6092e-01, 2.1789e-03, + 2DIAGNOSTIC, 25, -9.052609021441e-01, 1.829635786710e-06, 7.6311e-01, 2.1901e-03, + 2DIAGNOSTIC, 26, -9.054071913501e-01, 2.925602755562e-06, 7.6527e-01, 2.1651e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.654562500222e-01, 1.797693134862e+308, 1.0271e+00, 2.6182e-01, + 2DIAGNOSTIC, 2, -7.666995278344e-01, 1.797693134862e+308, 1.0405e+00, 1.3434e-02, + 2DIAGNOSTIC, 3, -7.676859972642e-01, 1.797693134862e+308, 1.0544e+00, 1.3854e-02, + 2DIAGNOSTIC, 4, -7.687384844232e-01, 1.797693134862e+308, 1.0677e+00, 1.3320e-02, + 2DIAGNOSTIC, 5, -7.699951874614e-01, 1.797693134862e+308, 1.0816e+00, 1.3920e-02, + 2DIAGNOSTIC, 6, -7.718736480107e-01, 1.797693134862e+308, 1.0978e+00, 1.6221e-02, + 2DIAGNOSTIC, 7, -7.747142587223e-01, 1.797693134862e+308, 1.1215e+00, 2.3656e-02, + 2DIAGNOSTIC, 8, -7.745231541223e-01, 1.797693134862e+308, 1.1347e+00, 1.3231e-02, + 2DIAGNOSTIC, 9, -7.747341281898e-01, 1.797693134862e+308, 1.1484e+00, 1.3671e-02, + 2DIAGNOSTIC, 10, -7.748857180415e-01, 9.008290822283e-04, 1.1622e+00, 1.3789e-02, + 2DIAGNOSTIC, 11, -7.750663103620e-01, 7.214097747634e-04, 1.1759e+00, 1.3702e-02, + 2DIAGNOSTIC, 12, -7.754144868986e-01, 5.549447266040e-04, 1.1895e+00, 1.3634e-02, + 2DIAGNOSTIC, 13, -7.758855108389e-01, 4.056740130387e-04, 1.2053e+00, 1.5755e-02, + 2DIAGNOSTIC, 14, -7.760531638012e-01, 2.738977330653e-04, 1.2211e+00, 1.5830e-02, + 2DIAGNOSTIC, 15, -7.768643846460e-01, 1.851929839150e-04, 1.2512e+00, 3.0047e-02, + 2DIAGNOSTIC, 16, -7.768906855245e-01, 1.323619391362e-04, 1.2674e+00, 1.6276e-02, + 2DIAGNOSTIC, 17, -7.768944159369e-01, 1.355904970783e-04, 1.2817e+00, 1.4273e-02, + 2DIAGNOSTIC, 18, -7.768765633987e-01, 1.218896678153e-04, 1.2959e+00, 1.4167e-02, + 2DIAGNOSTIC, 19, -7.768865470158e-01, 1.027213320391e-04, 1.3121e+00, 1.6257e-02, + 2DIAGNOSTIC, 20, -7.768738815810e-01, 7.849304371024e-05, 1.3253e+00, 1.3210e-02, + 2DIAGNOSTIC, 21, -7.769158471447e-01, 5.322623400442e-05, 1.3386e+00, 1.3211e-02, + 2DIAGNOSTIC, 22, -7.769434598740e-01, 3.171865239959e-05, 1.3519e+00, 1.3376e-02, + 2DIAGNOSTIC, 23, -7.770091472927e-01, 1.790687272812e-05, 1.3670e+00, 1.5118e-02, + 2DIAGNOSTIC, 24, -7.769847720862e-01, 5.529514580924e-06, 1.3807e+00, 1.3674e-02, + 2DIAGNOSTIC, 25, -7.769964377548e-01, 5.847063991225e-06, 1.3939e+00, 1.3215e-02, + 2DIAGNOSTIC, 26, -7.770711552167e-01, 7.129374505900e-06, 1.4092e+00, 1.5286e-02, + 2DIAGNOSTIC, 27, -7.771559272282e-01, 8.924703633797e-06, 1.4254e+00, 1.6194e-02, + 2DIAGNOSTIC, 28, -7.771508328071e-01, 9.531535570734e-06, 1.4399e+00, 1.4530e-02, + 2DIAGNOSTIC, 29, -7.772221067785e-01, 1.038018615027e-05, 1.4553e+00, 1.5381e-02, + 2DIAGNOSTIC, 30, -7.774199616483e-01, 1.254785779860e-05, 1.4767e+00, 2.1423e-02, + 2DIAGNOSTIC, 31, -7.774552468263e-01, 1.432053688089e-05, 1.4923e+00, 1.5570e-02, + 2DIAGNOSTIC, 32, -7.774140023181e-01, 1.455346111486e-05, 1.5106e+00, 1.8323e-02, + 2DIAGNOSTIC, 33, -7.774089225677e-01, 1.423098269526e-05, 1.5247e+00, 1.4100e-02, + 2DIAGNOSTIC, 34, -7.773973989203e-01, 1.228386744711e-05, 1.5390e+00, 1.4278e-02, + 2DIAGNOSTIC, 35, -7.774282334023e-01, 9.759562715282e-06, 1.5576e+00, 1.8551e-02, + 2DIAGNOSTIC, 36, -7.774345302531e-01, 7.322709850703e-06, 1.5751e+00, 1.7567e-02, + 2DIAGNOSTIC, 37, -7.774125293006e-01, 5.075074214940e-06, 1.5887e+00, 1.3590e-02, + 2DIAGNOSTIC, 38, -7.773918578640e-01, 2.319531639781e-06, 1.6017e+00, 1.2999e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.474893518770e-01, 1.797693134862e+308, 2.0927e+00, 4.9100e-01, + 2DIAGNOSTIC, 2, -6.483432069232e-01, 1.797693134862e+308, 2.1825e+00, 8.9725e-02, + 2DIAGNOSTIC, 3, -6.485591896673e-01, 1.797693134862e+308, 2.2733e+00, 9.0876e-02, + 2DIAGNOSTIC, 4, -6.486071858584e-01, 1.797693134862e+308, 2.3629e+00, 8.9550e-02, + 2DIAGNOSTIC, 5, -6.486930163854e-01, 1.797693134862e+308, 2.4620e+00, 9.9136e-02, + 2DIAGNOSTIC, 6, -6.487335732735e-01, 1.797693134862e+308, 2.5764e+00, 1.1436e-01, + 2DIAGNOSTIC, 7, -6.487609985763e-01, 1.797693134862e+308, 2.6663e+00, 8.9963e-02, + 2DIAGNOSTIC, 8, -6.487738374146e-01, 1.797693134862e+308, 2.7673e+00, 1.0098e-01, + 2DIAGNOSTIC, 9, -6.488109507729e-01, 1.797693134862e+308, 2.8848e+00, 1.1752e-01, + 2DIAGNOSTIC, 10, -6.488225656497e-01, 8.955569163660e-05, 2.9736e+00, 8.8769e-02, + 2DIAGNOSTIC, 11, -6.489975239379e-01, 4.550572797164e-05, 3.0891e+00, 1.1554e-01, + 2DIAGNOSTIC, 12, -6.490306279054e-01, 3.703356157717e-05, 3.1907e+00, 1.0160e-01, + 2DIAGNOSTIC, 13, -6.490247576712e-01, 3.388371262528e-05, 3.2932e+00, 1.0248e-01, + 2DIAGNOSTIC, 14, -6.490233688645e-01, 2.982429643007e-05, 3.3945e+00, 1.0123e-01, + 2DIAGNOSTIC, 15, -6.490193392673e-01, 2.614806016710e-05, 3.4932e+00, 9.8704e-02, + 2DIAGNOSTIC, 16, -6.490198069599e-01, 2.176562238415e-05, 3.5950e+00, 1.0189e-01, + 2DIAGNOSTIC, 17, -6.490179812500e-01, 1.671204710539e-05, 3.6945e+00, 9.9503e-02, + 2DIAGNOSTIC, 18, -6.490160931230e-01, 1.116208065496e-05, 3.7819e+00, 8.7322e-02, + 2DIAGNOSTIC, 19, -6.490216794323e-01, 6.366239584131e-06, 3.8854e+00, 1.0349e-01, + 2DIAGNOSTIC, 20, -6.490228809670e-01, 1.788587851902e-06, 3.9960e+00, 1.1067e-01, + 2DIAGNOSTIC, 21, -6.490221955091e-01, 1.242530720258e-06, 4.0875e+00, 9.1521e-02, + 2DIAGNOSTIC, 22, -6.490177896936e-01, 1.347939598446e-06, 4.1965e+00, 1.0892e-01, + 2DIAGNOSTIC, 23, -6.490256684198e-01, 1.494564387354e-06, 4.3006e+00, 1.0408e-01, + 2DIAGNOSTIC, 24, -6.490219068391e-01, 1.519265913977e-06, 4.3914e+00, 9.0807e-02, + 2DIAGNOSTIC, 25, -6.490273213245e-01, 1.548536164742e-06, 4.4999e+00, 1.0859e-01, + 2DIAGNOSTIC, 26, -6.490278425726e-01, 1.567501564749e-06, 4.5952e+00, 9.5275e-02, + 2DIAGNOSTIC, 27, -6.490418745244e-01, 1.753575429225e-06, 4.7305e+00, 1.3532e-01, + 2DIAGNOSTIC, 28, -6.490429681252e-01, 1.850830130434e-06, 4.8210e+00, 9.0426e-02, + 2DIAGNOSTIC, 29, -6.490507527290e-01, 2.076529228665e-06, 4.9417e+00, 1.2076e-01, + 2DIAGNOSTIC, 30, -6.490520066451e-01, 2.230940900745e-06, 5.0609e+00, 1.1915e-01, + 2DIAGNOSTIC, 31, -6.490571108644e-01, 2.329207803228e-06, 5.1795e+00, 1.1858e-01, + 2DIAGNOSTIC, 32, -6.490564432109e-01, 2.222556557706e-06, 5.3419e+00, 1.6245e-01, + 2DIAGNOSTIC, 33, -6.490493141834e-01, 2.018244995329e-06, 5.4473e+00, 1.0537e-01, + 2DIAGNOSTIC, 34, -6.490493325352e-01, 1.680481875758e-06, 5.7862e+00, 3.3891e-01, + 2DIAGNOSTIC, 35, -6.490493325351e-01, 1.359087608833e-06, 6.0002e+00, 2.1398e-01, + 2DIAGNOSTIC, 36, -6.490493325351e-01, 1.013422831257e-06, 6.1029e+00, 1.0274e-01, + Elapsed time (stage 0): 6.2500e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.935376860893e-01, 1.797693134862e+308, 2.1646e-01, 2.1646e-01, + 2DIAGNOSTIC, 2, -9.975597763366e-01, 1.797693134862e+308, 2.1780e-01, 1.3430e-03, + 2DIAGNOSTIC, 3, -1.000223538724e+00, 1.797693134862e+308, 2.1914e-01, 1.3361e-03, + 2DIAGNOSTIC, 4, -1.005584856517e+00, 1.797693134862e+308, 2.2062e-01, 1.4801e-03, + 2DIAGNOSTIC, 5, -1.008367947526e+00, 1.797693134862e+308, 2.2207e-01, 1.4470e-03, + 2DIAGNOSTIC, 6, -1.009261662507e+00, 1.797693134862e+308, 2.2333e-01, 1.2650e-03, + 2DIAGNOSTIC, 7, -1.012411944487e+00, 1.797693134862e+308, 2.2480e-01, 1.4648e-03, + 2DIAGNOSTIC, 8, -1.017715059012e+00, 1.797693134862e+308, 2.2631e-01, 1.5130e-03, + 2DIAGNOSTIC, 9, -1.021378402389e+00, 1.797693134862e+308, 2.2783e-01, 1.5230e-03, + 2DIAGNOSTIC, 10, -1.020322150294e+00, 1.784261366742e-03, 2.2959e-01, 1.7529e-03, + 2DIAGNOSTIC, 11, -1.019295854115e+00, 1.417279387672e-03, 2.3218e-01, 2.5971e-03, + 2DIAGNOSTIC, 12, -1.019366276867e+00, 1.081991246078e-03, 2.3366e-01, 1.4811e-03, + 2DIAGNOSTIC, 13, -1.018718702616e+00, 7.394972075250e-04, 2.3515e-01, 1.4899e-03, + 2DIAGNOSTIC, 14, -1.019016156191e+00, 4.910552893770e-04, 2.3670e-01, 1.5478e-03, + 2DIAGNOSTIC, 15, -1.019321631723e+00, 2.908930980395e-04, 2.3821e-01, 1.5080e-03, + 2DIAGNOSTIC, 16, -1.018790096130e+00, 9.648482168231e-05, 2.3971e-01, 1.4982e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.939729396530e-01, 1.797693134862e+308, 4.6231e-01, 2.2260e-01, + 2DIAGNOSTIC, 2, -8.940230193614e-01, 1.797693134862e+308, 4.6474e-01, 2.4309e-03, + 2DIAGNOSTIC, 3, -8.950878157746e-01, 1.797693134862e+308, 4.6718e-01, 2.4421e-03, + 2DIAGNOSTIC, 4, -8.973604875609e-01, 1.797693134862e+308, 4.7008e-01, 2.8989e-03, + 2DIAGNOSTIC, 5, -8.981228004999e-01, 1.797693134862e+308, 4.7267e-01, 2.5949e-03, + 2DIAGNOSTIC, 6, -8.986456640046e-01, 1.797693134862e+308, 4.7472e-01, 2.0511e-03, + 2DIAGNOSTIC, 7, -9.015577098136e-01, 1.797693134862e+308, 4.7708e-01, 2.3561e-03, + 2DIAGNOSTIC, 8, -9.021014827025e-01, 1.797693134862e+308, 4.7971e-01, 2.6329e-03, + 2DIAGNOSTIC, 9, -9.024317398832e-01, 1.797693134862e+308, 4.8293e-01, 3.2170e-03, + 2DIAGNOSTIC, 10, -9.020899527606e-01, 7.127498877699e-04, 4.8577e-01, 2.8441e-03, + 2DIAGNOSTIC, 11, -9.018368266253e-01, 5.729154964293e-04, 4.8802e-01, 2.2461e-03, + 2DIAGNOSTIC, 12, -9.017489365083e-01, 4.034395866342e-04, 4.9026e-01, 2.2440e-03, + 2DIAGNOSTIC, 13, -9.018466434063e-01, 2.503671497856e-04, 4.9251e-01, 2.2490e-03, + 2DIAGNOSTIC, 14, -9.019639170327e-01, 1.510432188123e-04, 4.9477e-01, 2.2540e-03, + 2DIAGNOSTIC, 15, -9.021656621765e-01, 7.237003959414e-05, 4.9737e-01, 2.6028e-03, + 2DIAGNOSTIC, 16, -9.021225267538e-01, 5.235192008568e-06, 5.0006e-01, 2.6910e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.859031990892e-01, 1.797693134862e+308, 7.5046e-01, 2.5040e-01, + 2DIAGNOSTIC, 2, -7.879423751436e-01, 1.797693134862e+308, 7.6403e-01, 1.3568e-02, + 2DIAGNOSTIC, 3, -7.903267940539e-01, 1.797693134862e+308, 7.7754e-01, 1.3510e-02, + 2DIAGNOSTIC, 4, -7.922867411472e-01, 1.797693134862e+308, 7.9096e-01, 1.3419e-02, + 2DIAGNOSTIC, 5, -7.933906422405e-01, 1.797693134862e+308, 8.0405e-01, 1.3086e-02, + 2DIAGNOSTIC, 6, -7.937968101909e-01, 1.797693134862e+308, 8.1965e-01, 1.5604e-02, + 2DIAGNOSTIC, 7, -7.939141047548e-01, 1.797693134862e+308, 8.3511e-01, 1.5456e-02, + 2DIAGNOSTIC, 8, -7.940126380982e-01, 1.797693134862e+308, 8.6840e-01, 3.3294e-02, + 2DIAGNOSTIC, 9, -7.939975855445e-01, 1.797693134862e+308, 8.8385e-01, 1.5450e-02, + 2DIAGNOSTIC, 10, -7.940021651846e-01, 6.062133532195e-04, 8.9784e-01, 1.3989e-02, + 2DIAGNOSTIC, 11, -7.939854605372e-01, 3.540120278654e-04, 9.1413e-01, 1.6287e-02, + 2DIAGNOSTIC, 12, -7.939924201083e-01, 1.727162706834e-04, 9.2815e-01, 1.4020e-02, + 2DIAGNOSTIC, 13, -7.939791064115e-01, 6.836550661289e-05, 9.4205e-01, 1.3904e-02, + 2DIAGNOSTIC, 14, -7.939952052066e-01, 2.294429531755e-05, 9.5602e-01, 1.3968e-02, + 2DIAGNOSTIC, 15, -7.939934351111e-01, 7.831313576873e-06, 9.7184e-01, 1.5822e-02, + 2DIAGNOSTIC, 16, -7.940177854891e-01, 3.685867255243e-06, 9.8622e-01, 1.4382e-02, + 2DIAGNOSTIC, 17, -7.939984133607e-01, 1.866325197754e-06, 1.0017e+00, 1.5523e-02, + 2DIAGNOSTIC, 18, -7.939530257402e-01, 1.331679159465e-06, 1.0153e+00, 1.3561e-02, + 2DIAGNOSTIC, 19, -7.939953074808e-01, 1.426999608298e-06, 1.0350e+00, 1.9646e-02, + 2DIAGNOSTIC, 20, -7.939818623628e-01, 1.343974078159e-06, 1.0509e+00, 1.5952e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.576097760385e-01, 1.797693134862e+308, 1.5208e+00, 4.6991e-01, + 2DIAGNOSTIC, 2, -6.581944414275e-01, 1.797693134862e+308, 1.6135e+00, 9.2672e-02, + 2DIAGNOSTIC, 3, -6.585550654657e-01, 1.797693134862e+308, 1.7059e+00, 9.2439e-02, + 2DIAGNOSTIC, 4, -6.589945725790e-01, 1.797693134862e+308, 1.7998e+00, 9.3920e-02, + 2DIAGNOSTIC, 5, -6.596603033622e-01, 1.797693134862e+308, 1.9155e+00, 1.1564e-01, + 2DIAGNOSTIC, 6, -6.597799959293e-01, 1.797693134862e+308, 2.0607e+00, 1.4518e-01, + 2DIAGNOSTIC, 7, -6.598438025061e-01, 1.797693134862e+308, 2.1529e+00, 9.2238e-02, + 2DIAGNOSTIC, 8, -6.598681691851e-01, 1.797693134862e+308, 2.2455e+00, 9.2579e-02, + 2DIAGNOSTIC, 9, -6.599589786545e-01, 1.797693134862e+308, 2.3374e+00, 9.1887e-02, + 2DIAGNOSTIC, 10, -6.601361982957e-01, 2.362408026838e-04, 2.4305e+00, 9.3156e-02, + 2DIAGNOSTIC, 11, -6.602448521494e-01, 1.681180339105e-04, 2.6114e+00, 1.8083e-01, + 2DIAGNOSTIC, 12, -6.602494501964e-01, 1.178835116797e-04, 2.7373e+00, 1.2598e-01, + 2DIAGNOSTIC, 13, -6.602466879087e-01, 7.686124065896e-05, 2.8512e+00, 1.1383e-01, + 2DIAGNOSTIC, 14, -6.602437611817e-01, 4.786230751540e-05, 2.9672e+00, 1.1604e-01, + 2DIAGNOSTIC, 15, -6.602410306654e-01, 3.744860580281e-05, 3.0853e+00, 1.1810e-01, + 2DIAGNOSTIC, 16, -6.602378722590e-01, 2.816744656219e-05, 3.2035e+00, 1.1819e-01, + 2DIAGNOSTIC, 17, -6.602320876796e-01, 1.911132124359e-05, 3.3464e+00, 1.4288e-01, + 2DIAGNOSTIC, 18, -6.602300100310e-01, 1.003746950614e-05, 3.4392e+00, 9.2783e-02, + 2DIAGNOSTIC, 19, -6.602279804661e-01, 3.082608669470e-06, 3.5467e+00, 1.0755e-01, + Elapsed time (stage 1): 3.6853e+00 + + +Total elapsed time: 9.9384e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:05:33 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:05:34 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5599f1f094f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.749, 56.4089, -118.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5599f1f0efa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7c239e5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5599f1f0a850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.749, 56.4089, -118.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5599f1f07f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7c20326010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5599f1f21b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.749, 56.4089, -118.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5599f1f0e550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7c1cc67010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5599f1f26d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.749, 56.4089, -118.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5599f1f24c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7c195a8010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x5599f1f28f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.749, 56.4089, -118.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5599f1f273a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7c15ee9010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5599f1f29540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.749, 56.4089, -118.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5599f1f294d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7c1282a010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.138507566848e-01, 1.797693134862e+308, 2.2445e-01, 2.2445e-01, + 2DIAGNOSTIC, 2, -7.149834144551e-01, 1.797693134862e+308, 2.2664e-01, 2.1961e-03, + 2DIAGNOSTIC, 3, -7.156963943618e-01, 1.797693134862e+308, 2.2872e-01, 2.0721e-03, + 2DIAGNOSTIC, 4, -7.161083954340e-01, 1.797693134862e+308, 2.3088e-01, 2.1648e-03, + 2DIAGNOSTIC, 5, -7.161940234091e-01, 1.797693134862e+308, 2.3314e-01, 2.2571e-03, + 2DIAGNOSTIC, 6, -7.165144565353e-01, 1.797693134862e+308, 2.3559e-01, 2.4509e-03, + 2DIAGNOSTIC, 7, -7.172797677538e-01, 1.797693134862e+308, 2.3808e-01, 2.4958e-03, + 2DIAGNOSTIC, 8, -7.176910097461e-01, 1.797693134862e+308, 2.4047e-01, 2.3820e-03, + 2DIAGNOSTIC, 9, -7.195870055028e-01, 1.797693134862e+308, 2.4337e-01, 2.8999e-03, + 2DIAGNOSTIC, 10, -7.192571605032e-01, 4.563602334689e-04, 2.4592e-01, 2.5501e-03, + 2DIAGNOSTIC, 11, -7.188458897307e-01, 3.719810571053e-04, 2.4839e-01, 2.4710e-03, + 2DIAGNOSTIC, 12, -7.189574880946e-01, 3.100019954708e-04, 2.5059e-01, 2.2042e-03, + 2DIAGNOSTIC, 13, -7.187986985266e-01, 2.456351014222e-04, 2.5282e-01, 2.2311e-03, + 2DIAGNOSTIC, 14, -7.188768321001e-01, 1.817240705439e-04, 2.5544e-01, 2.6159e-03, + 2DIAGNOSTIC, 15, -7.190332624542e-01, 1.164785816791e-04, 2.6270e-01, 7.2601e-03, + 2DIAGNOSTIC, 16, -7.190332579041e-01, 5.723853823843e-05, 2.6503e-01, 2.3270e-03, + 2DIAGNOSTIC, 17, -7.190332898130e-01, 1.793804041788e-05, 2.6727e-01, 2.2471e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.218212883008e-01, 1.797693134862e+308, 4.9554e-01, 2.2827e-01, + 2DIAGNOSTIC, 2, -6.237158787862e-01, 1.797693134862e+308, 5.0985e-01, 1.4304e-02, + 2DIAGNOSTIC, 3, -6.259896247219e-01, 1.797693134862e+308, 5.2411e-01, 1.4259e-02, + 2DIAGNOSTIC, 4, -6.278958848551e-01, 1.797693134862e+308, 5.3843e-01, 1.4325e-02, + 2DIAGNOSTIC, 5, -6.290593646227e-01, 1.797693134862e+308, 5.5306e-01, 1.4630e-02, + 2DIAGNOSTIC, 6, -6.294035621018e-01, 1.797693134862e+308, 5.7782e-01, 2.4759e-02, + 2DIAGNOSTIC, 7, -6.294379880180e-01, 1.797693134862e+308, 5.9423e-01, 1.6405e-02, + 2DIAGNOSTIC, 8, -6.296572052518e-01, 1.797693134862e+308, 6.1065e-01, 1.6425e-02, + 2DIAGNOSTIC, 9, -6.297295680774e-01, 1.797693134862e+308, 6.3259e-01, 2.1936e-02, + 2DIAGNOSTIC, 10, -6.297456441046e-01, 7.516857084806e-04, 6.4720e-01, 1.4612e-02, + 2DIAGNOSTIC, 11, -6.297287278806e-01, 4.500787238978e-04, 6.6673e-01, 1.9530e-02, + 2DIAGNOSTIC, 12, -6.297182578859e-01, 2.289425059775e-04, 6.8344e-01, 1.6713e-02, + 2DIAGNOSTIC, 13, -6.297061236144e-01, 9.885425609395e-05, 6.9754e-01, 1.4094e-02, + 2DIAGNOSTIC, 14, -6.297044376718e-01, 3.918742976529e-05, 7.1141e-01, 1.3874e-02, + 2DIAGNOSTIC, 15, -6.297327651538e-01, 1.986322340723e-05, 7.2759e-01, 1.6178e-02, + 2DIAGNOSTIC, 16, -6.297448238157e-01, 1.146176808479e-05, 7.4710e-01, 1.9510e-02, + 2DIAGNOSTIC, 17, -6.297365042624e-01, 3.743169811700e-06, 7.6361e-01, 1.6515e-02, + 2DIAGNOSTIC, 18, -6.297138179206e-01, 1.621339315479e-06, 7.7802e-01, 1.4409e-02, + 2DIAGNOSTIC, 19, -6.296965266083e-01, 1.044591408803e-06, 7.9479e-01, 1.6770e-02, + 2DIAGNOSTIC, 20, -6.297000664066e-01, 1.021661485981e-06, 8.1119e-01, 1.6393e-02, + 2DIAGNOSTIC, 21, -6.297163923026e-01, 1.023529484515e-06, 8.2692e-01, 1.5733e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.216688298740e-01, 1.797693134862e+308, 1.2319e+00, 4.0494e-01, + 2DIAGNOSTIC, 2, -5.217104848749e-01, 1.797693134862e+308, 1.3257e+00, 9.3793e-02, + 2DIAGNOSTIC, 3, -5.217696305474e-01, 1.797693134862e+308, 1.4210e+00, 9.5304e-02, + 2DIAGNOSTIC, 4, -5.219346895041e-01, 1.797693134862e+308, 1.5194e+00, 9.8399e-02, + 2DIAGNOSTIC, 5, -5.221326217895e-01, 1.797693134862e+308, 1.6158e+00, 9.6478e-02, + 2DIAGNOSTIC, 6, -5.224376799996e-01, 1.797693134862e+308, 1.8296e+00, 2.1372e-01, + 2DIAGNOSTIC, 7, -5.224385490168e-01, 1.797693134862e+308, 1.9360e+00, 1.0643e-01, + 2DIAGNOSTIC, 8, -5.224373461039e-01, 1.797693134862e+308, 2.0985e+00, 1.6247e-01, + 2DIAGNOSTIC, 9, -5.224383400882e-01, 1.797693134862e+308, 2.2114e+00, 1.1298e-01, + 2DIAGNOSTIC, 10, -5.224351242386e-01, 1.205693092041e-04, 2.3230e+00, 1.1158e-01, + 2DIAGNOSTIC, 11, -5.224329453369e-01, 9.195090770082e-05, 2.4185e+00, 9.5434e-02, + 2DIAGNOSTIC, 12, -5.224329218958e-01, 6.211684710325e-05, 2.5285e+00, 1.1005e-01, + 2DIAGNOSTIC, 13, -5.224304480714e-01, 3.398561069554e-05, 2.6273e+00, 9.8758e-02, + 2DIAGNOSTIC, 14, -5.224298911814e-01, 1.332931196357e-05, 2.7372e+00, 1.0989e-01, + 2DIAGNOSTIC, 15, -5.224288513928e-01, 1.246191167870e-06, 2.8457e+00, 1.0859e-01, + 2DIAGNOSTIC, 16, -5.224295825302e-01, 1.155277901954e-06, 2.9578e+00, 1.1211e-01, + 2DIAGNOSTIC, 17, -5.224272103027e-01, 1.102703438331e-06, 3.0684e+00, 1.1051e-01, + 2DIAGNOSTIC, 18, -5.224257743225e-01, 1.047264116052e-06, 3.2036e+00, 1.3528e-01, + 2DIAGNOSTIC, 19, -5.224250119152e-01, 1.074285316094e-06, 3.3113e+00, 1.0771e-01, + 2DIAGNOSTIC, 20, -5.224245781895e-01, 1.055220608760e-06, 3.4189e+00, 1.0759e-01, + 2DIAGNOSTIC, 21, -5.224241379755e-01, 1.018508652591e-06, 3.5200e+00, 1.0103e-01, + 2DIAGNOSTIC, 22, -5.224244390192e-01, 1.040470368689e-06, 3.6136e+00, 9.3678e-02, + 2DIAGNOSTIC, 23, -5.224259728086e-01, 1.076965302500e-06, 3.7224e+00, 1.0875e-01, + 2DIAGNOSTIC, 24, -5.224286349834e-01, 1.186244056879e-06, 3.8308e+00, 1.0838e-01, + 2DIAGNOSTIC, 25, -5.224251046724e-01, 1.197928796472e-06, 3.9407e+00, 1.0997e-01, + 2DIAGNOSTIC, 26, -5.224252459028e-01, 1.238275348411e-06, 4.0517e+00, 1.1098e-01, + 2DIAGNOSTIC, 27, -5.224249314127e-01, 1.220368965743e-06, 4.1605e+00, 1.0881e-01, + 2DIAGNOSTIC, 28, -5.224246089724e-01, 1.164164070568e-06, 4.2548e+00, 9.4301e-02, + 2DIAGNOSTIC, 29, -5.224251136743e-01, 1.104037679202e-06, 4.3663e+00, 1.1145e-01, + 2DIAGNOSTIC, 30, -5.224229086765e-01, 1.000618665981e-06, 4.4756e+00, 1.0931e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.495592557166e-01, 1.797693134862e+308, 5.8017e+00, 1.3261e+00, + 2DIAGNOSTIC, 2, -4.497091088690e-01, 1.797693134862e+308, 6.4137e+00, 6.1200e-01, + 2DIAGNOSTIC, 3, -4.498269044599e-01, 1.797693134862e+308, 7.2229e+00, 8.0924e-01, + 2DIAGNOSTIC, 4, -4.498481871525e-01, 1.797693134862e+308, 8.5601e+00, 1.3372e+00, + 2DIAGNOSTIC, 5, -4.498496811327e-01, 1.797693134862e+308, 9.2881e+00, 7.2806e-01, + 2DIAGNOSTIC, 6, -4.498492390863e-01, 1.797693134862e+308, 9.9574e+00, 6.6927e-01, + 2DIAGNOSTIC, 7, -4.498485400413e-01, 1.797693134862e+308, 1.0604e+01, 6.4673e-01, + 2DIAGNOSTIC, 8, -4.498478371104e-01, 1.797693134862e+308, 1.1395e+01, 7.9074e-01, + 2DIAGNOSTIC, 9, -4.498477809416e-01, 1.797693134862e+308, 1.2082e+01, 6.8742e-01, + 2DIAGNOSTIC, 10, -4.498475246656e-01, 2.998411414236e-05, 1.2646e+01, 5.6331e-01, + 2DIAGNOSTIC, 11, -4.498474790628e-01, 1.180233475780e-05, 1.3409e+01, 7.6371e-01, + 2DIAGNOSTIC, 12, -4.498475258157e-01, 3.582577284195e-06, 1.4058e+01, 6.4855e-01, + 2DIAGNOSTIC, 13, -4.498474045597e-01, 2.234003492946e-06, 1.4631e+01, 5.7323e-01, + 2DIAGNOSTIC, 14, -4.498473115495e-01, 2.051433668049e-06, 1.5282e+01, 6.5076e-01, + 2DIAGNOSTIC, 15, -4.498474106531e-01, 1.980452384032e-06, 1.5851e+01, 5.6899e-01, + 2DIAGNOSTIC, 16, -4.498470906417e-01, 1.901369819368e-06, 1.6516e+01, 6.6552e-01, + 2DIAGNOSTIC, 17, -4.498468409611e-01, 1.805219733537e-06, 1.7269e+01, 7.5313e-01, + 2DIAGNOSTIC, 18, -4.498464825560e-01, 1.688774117235e-06, 1.7992e+01, 7.2255e-01, + 2DIAGNOSTIC, 19, -4.498463716436e-01, 1.586682242781e-06, 1.8656e+01, 6.6363e-01, + 2DIAGNOSTIC, 20, -4.498462425288e-01, 1.490594443210e-06, 1.9338e+01, 6.8196e-01, + 2DIAGNOSTIC, 21, -4.498461276307e-01, 1.408087647148e-06, 1.9918e+01, 5.8048e-01, + 2DIAGNOSTIC, 22, -4.498458833876e-01, 1.337682539328e-06, 2.0550e+01, 6.3143e-01, + 2DIAGNOSTIC, 23, -4.498459983732e-01, 1.283620829372e-06, 2.1195e+01, 6.4596e-01, + 2DIAGNOSTIC, 24, -4.498459204465e-01, 1.238489815002e-06, 2.1784e+01, 5.8891e-01, + 2DIAGNOSTIC, 25, -4.498458585129e-01, 1.206151352053e-06, 2.2421e+01, 6.3694e-01, + 2DIAGNOSTIC, 26, -4.498457963260e-01, 1.173420000534e-06, 2.3078e+01, 6.5683e-01, + 2DIAGNOSTIC, 27, -4.498452889363e-01, 1.130365988804e-06, 2.3670e+01, 5.9148e-01, + 2DIAGNOSTIC, 28, -4.498453670346e-01, 1.088838223917e-06, 2.4316e+01, 6.4670e-01, + 2DIAGNOSTIC, 29, -4.498453826343e-01, 1.052346065414e-06, 2.5136e+01, 8.1941e-01, + 2DIAGNOSTIC, 30, -4.498454658817e-01, 1.021452339746e-06, 2.5798e+01, 6.6221e-01, + Elapsed time (stage 0): 2.6186e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.219866703126e-01, 1.797693134862e+308, 1.9863e-01, 1.9862e-01, + 2DIAGNOSTIC, 2, -7.234859752969e-01, 1.797693134862e+308, 2.0146e-01, 2.8341e-03, + 2DIAGNOSTIC, 3, -7.255549751226e-01, 1.797693134862e+308, 2.0425e-01, 2.7931e-03, + 2DIAGNOSTIC, 4, -7.277348301667e-01, 1.797693134862e+308, 2.0689e-01, 2.6391e-03, + 2DIAGNOSTIC, 5, -7.300563863582e-01, 1.797693134862e+308, 2.0910e-01, 2.2130e-03, + 2DIAGNOSTIC, 6, -7.334391216783e-01, 1.797693134862e+308, 2.1149e-01, 2.3861e-03, + 2DIAGNOSTIC, 7, -7.340897765627e-01, 1.797693134862e+308, 2.1430e-01, 2.8059e-03, + 2DIAGNOSTIC, 8, -7.349985342359e-01, 1.797693134862e+308, 2.1756e-01, 3.2599e-03, + 2DIAGNOSTIC, 9, -7.362106962873e-01, 1.797693134862e+308, 2.1983e-01, 2.2719e-03, + 2DIAGNOSTIC, 10, -7.372953102072e-01, 1.426448065819e-03, 2.2263e-01, 2.8040e-03, + 2DIAGNOSTIC, 11, -7.392156668164e-01, 1.216599460741e-03, 2.2488e-01, 2.2471e-03, + 2DIAGNOSTIC, 12, -7.395275689227e-01, 9.904828420381e-04, 2.2757e-01, 2.6948e-03, + 2DIAGNOSTIC, 13, -7.394548123050e-01, 7.708490535449e-04, 2.3024e-01, 2.6629e-03, + 2DIAGNOSTIC, 14, -7.390230371392e-01, 5.613921657575e-04, 2.3389e-01, 3.6530e-03, + 2DIAGNOSTIC, 15, -7.389330160738e-01, 3.844459726506e-04, 2.3612e-01, 2.2330e-03, + 2DIAGNOSTIC, 16, -7.389497842859e-01, 2.763189195750e-04, 2.3844e-01, 2.3160e-03, + 2DIAGNOSTIC, 17, -7.389749431250e-01, 1.708138794714e-04, 2.4069e-01, 2.2500e-03, + 2DIAGNOSTIC, 18, -7.388564137797e-01, 7.869858059362e-05, 2.4299e-01, 2.3038e-03, + 2DIAGNOSTIC, 19, -7.389076701851e-01, 1.512179566259e-05, 2.4558e-01, 2.5890e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.248280851706e-01, 1.797693134862e+308, 4.7185e-01, 2.2626e-01, + 2DIAGNOSTIC, 2, -6.255397051061e-01, 1.797693134862e+308, 4.8708e-01, 1.5230e-02, + 2DIAGNOSTIC, 3, -6.267100560338e-01, 1.797693134862e+308, 5.0247e-01, 1.5393e-02, + 2DIAGNOSTIC, 4, -6.285455967771e-01, 1.797693134862e+308, 5.1950e-01, 1.7035e-02, + 2DIAGNOSTIC, 5, -6.302558370939e-01, 1.797693134862e+308, 5.3723e-01, 1.7722e-02, + 2DIAGNOSTIC, 6, -6.303017685821e-01, 1.797693134862e+308, 5.5386e-01, 1.6636e-02, + 2DIAGNOSTIC, 7, -6.303503792500e-01, 1.797693134862e+308, 5.7098e-01, 1.7114e-02, + 2DIAGNOSTIC, 8, -6.304009187356e-01, 1.797693134862e+308, 5.8572e-01, 1.4744e-02, + 2DIAGNOSTIC, 9, -6.304639464763e-01, 1.797693134862e+308, 6.0059e-01, 1.4874e-02, + 2DIAGNOSTIC, 10, -6.305172984176e-01, 6.103305481842e-04, 6.1563e-01, 1.5030e-02, + 2DIAGNOSTIC, 11, -6.305707304713e-01, 4.046463299820e-04, 6.3075e-01, 1.5120e-02, + 2DIAGNOSTIC, 12, -6.308467424912e-01, 2.350634876435e-04, 6.4938e-01, 1.8634e-02, + 2DIAGNOSTIC, 13, -6.309477537401e-01, 1.134750259709e-04, 6.7247e-01, 2.3091e-02, + 2DIAGNOSTIC, 14, -6.309788036496e-01, 5.788186828061e-05, 6.8991e-01, 1.7444e-02, + 2DIAGNOSTIC, 15, -6.310625814252e-01, 5.875025861976e-05, 7.0513e-01, 1.5211e-02, + 2DIAGNOSTIC, 16, -6.311197727684e-01, 5.716303956925e-05, 7.2046e-01, 1.5334e-02, + 2DIAGNOSTIC, 17, -6.311423884441e-01, 5.243818087942e-05, 7.3572e-01, 1.5257e-02, + 2DIAGNOSTIC, 18, -6.311688831883e-01, 4.545657084655e-05, 7.5104e-01, 1.5324e-02, + 2DIAGNOSTIC, 19, -6.312303851866e-01, 3.818850980707e-05, 7.6807e-01, 1.7034e-02, + 2DIAGNOSTIC, 20, -6.312415580187e-01, 2.972617567253e-05, 7.8608e-01, 1.8001e-02, + 2DIAGNOSTIC, 21, -6.312470408783e-01, 2.057257577413e-05, 8.0423e-01, 1.8150e-02, + 2DIAGNOSTIC, 22, -6.312598955251e-01, 1.637898542625e-05, 8.2156e-01, 1.7336e-02, + 2DIAGNOSTIC, 23, -6.312747009008e-01, 1.342858002300e-05, 8.3921e-01, 1.7646e-02, + 2DIAGNOSTIC, 24, -6.312755023022e-01, 1.014346408692e-05, 8.5650e-01, 1.7288e-02, + 2DIAGNOSTIC, 25, -6.312758029560e-01, 7.792387963772e-06, 8.7163e-01, 1.5139e-02, + 2DIAGNOSTIC, 26, -6.312760951138e-01, 6.019254710381e-06, 9.2198e-01, 5.0349e-02, + 2DIAGNOSTIC, 27, -6.312760951080e-01, 4.301863522911e-06, 9.6654e-01, 4.4552e-02, + 2DIAGNOSTIC, 28, -6.312760951080e-01, 2.810057952718e-06, 9.8335e-01, 1.6814e-02, + 2DIAGNOSTIC, 29, -6.312760951080e-01, 2.217882570418e-06, 1.0031e+00, 1.9745e-02, + 2DIAGNOSTIC, 30, -6.312760951080e-01, 1.730781161141e-06, 1.0200e+00, 1.6949e-02, + 2DIAGNOSTIC, 31, -6.312760951080e-01, 1.288909014685e-06, 1.0369e+00, 1.6876e-02, + 2DIAGNOSTIC, 32, -6.312760951080e-01, 1.025235417375e-06, 1.0546e+00, 1.7641e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.226523253128e-01, 1.797693134862e+308, 1.4485e+00, 3.9398e-01, + 2DIAGNOSTIC, 2, -5.232534758390e-01, 1.797693134862e+308, 1.5506e+00, 1.0202e-01, + 2DIAGNOSTIC, 3, -5.234248494160e-01, 1.797693134862e+308, 1.6590e+00, 1.0841e-01, + 2DIAGNOSTIC, 4, -5.234800837381e-01, 1.797693134862e+308, 1.7672e+00, 1.0828e-01, + 2DIAGNOSTIC, 5, -5.235991654256e-01, 1.797693134862e+308, 1.9166e+00, 1.4932e-01, + 2DIAGNOSTIC, 6, -5.236545298281e-01, 1.797693134862e+308, 2.0627e+00, 1.4617e-01, + 2DIAGNOSTIC, 7, -5.236655528450e-01, 1.797693134862e+308, 2.1769e+00, 1.1411e-01, + 2DIAGNOSTIC, 8, -5.236764927583e-01, 1.797693134862e+308, 2.2857e+00, 1.0888e-01, + 2DIAGNOSTIC, 9, -5.236842713652e-01, 1.797693134862e+308, 2.3941e+00, 1.0838e-01, + 2DIAGNOSTIC, 10, -5.236965181977e-01, 9.509569988855e-05, 2.5046e+00, 1.1049e-01, + 2DIAGNOSTIC, 11, -5.237006227316e-01, 4.562246203967e-05, 2.6515e+00, 1.4688e-01, + 2DIAGNOSTIC, 12, -5.237033744173e-01, 2.777047581955e-05, 2.7620e+00, 1.1056e-01, + 2DIAGNOSTIC, 13, -5.237045754925e-01, 1.763252004179e-05, 2.8672e+00, 1.0519e-01, + 2DIAGNOSTIC, 14, -5.237064890978e-01, 9.674560676506e-06, 2.9851e+00, 1.1791e-01, + 2DIAGNOSTIC, 15, -5.237125219632e-01, 6.574997404071e-06, 3.1473e+00, 1.6221e-01, + 2DIAGNOSTIC, 16, -5.237133070451e-01, 5.348970789743e-06, 3.5088e+00, 3.6140e-01, + 2DIAGNOSTIC, 17, -5.237133070423e-01, 4.309684646472e-06, 3.8354e+00, 3.2660e-01, + 2DIAGNOSTIC, 18, -5.237133070423e-01, 3.492447234972e-06, 3.9571e+00, 1.2170e-01, + 2DIAGNOSTIC, 19, -5.237133070423e-01, 2.814981548131e-06, 4.0774e+00, 1.2039e-01, + 2DIAGNOSTIC, 20, -5.237133070423e-01, 2.426894302646e-06, 4.1979e+00, 1.2043e-01, + 2DIAGNOSTIC, 21, -5.237133070423e-01, 2.102198932846e-06, 4.3489e+00, 1.5098e-01, + 2DIAGNOSTIC, 22, -5.237133070423e-01, 1.822175291918e-06, 4.4786e+00, 1.2977e-01, + 2DIAGNOSTIC, 23, -5.237133070423e-01, 1.560398634803e-06, 4.6093e+00, 1.3072e-01, + 2DIAGNOSTIC, 24, -5.237133070423e-01, 1.343420346869e-06, 4.7403e+00, 1.3099e-01, + 2DIAGNOSTIC, 25, -5.237133070423e-01, 1.272628654798e-06, 4.8701e+00, 1.2974e-01, + 2DIAGNOSTIC, 26, -5.237133070423e-01, 1.223672883757e-06, 4.9872e+00, 1.1715e-01, + 2DIAGNOSTIC, 27, -5.237133070423e-01, 1.178344021149e-06, 5.1025e+00, 1.1523e-01, + 2DIAGNOSTIC, 28, -5.237133070423e-01, 1.136253461077e-06, 5.2209e+00, 1.1846e-01, + 2DIAGNOSTIC, 29, -5.237133070423e-01, 1.097066154088e-06, 5.3362e+00, 1.1531e-01, + 2DIAGNOSTIC, 30, -5.237133070423e-01, 1.060491730834e-06, 5.4375e+00, 1.0132e-01, + 2DIAGNOSTIC, 31, -5.237133070423e-01, 1.026277294446e-06, 5.5530e+00, 1.1550e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.495346537627e-01, 1.797693134862e+308, 6.8585e+00, 1.3054e+00, + 2DIAGNOSTIC, 2, -4.496801623029e-01, 1.797693134862e+308, 7.8287e+00, 9.7025e-01, + 2DIAGNOSTIC, 3, -4.496955490212e-01, 1.797693134862e+308, 8.4972e+00, 6.6844e-01, + 2DIAGNOSTIC, 4, -4.498071660664e-01, 1.797693134862e+308, 9.2393e+00, 7.4211e-01, + 2DIAGNOSTIC, 5, -4.498521406655e-01, 1.797693134862e+308, 9.8874e+00, 6.4816e-01, + 2DIAGNOSTIC, 6, -4.498759345944e-01, 1.797693134862e+308, 1.0516e+01, 6.2866e-01, + 2DIAGNOSTIC, 7, -4.499069380742e-01, 1.797693134862e+308, 1.1159e+01, 6.4297e-01, + 2DIAGNOSTIC, 8, -4.499749590561e-01, 1.797693134862e+308, 1.1982e+01, 8.2319e-01, + 2DIAGNOSTIC, 9, -4.499777092179e-01, 1.797693134862e+308, 1.2726e+01, 7.4404e-01, + 2DIAGNOSTIC, 10, -4.499858046801e-01, 6.369625066958e-05, 1.3425e+01, 6.9875e-01, + 2DIAGNOSTIC, 11, -4.499993071289e-01, 4.625088085644e-05, 1.5536e+01, 2.1114e+00, + 2DIAGNOSTIC, 12, -4.499993070872e-01, 3.551488434074e-05, 1.6191e+01, 6.5441e-01, + 2DIAGNOSTIC, 13, -4.499993072162e-01, 2.405367870953e-05, 1.6873e+01, 6.8248e-01, + 2DIAGNOSTIC, 14, -4.499993074334e-01, 1.727703815810e-05, 1.7519e+01, 6.4582e-01, + 2DIAGNOSTIC, 15, -4.499993077986e-01, 1.195396341094e-05, 1.8171e+01, 6.5155e-01, + 2DIAGNOSTIC, 16, -4.499993084104e-01, 7.323098904152e-06, 1.8829e+01, 6.5871e-01, + 2DIAGNOSTIC, 17, -4.499993094285e-01, 3.829952734645e-06, 1.9496e+01, 6.6646e-01, + 2DIAGNOSTIC, 18, -4.499993112011e-01, 2.939756981755e-06, 2.0146e+01, 6.4971e-01, + 2DIAGNOSTIC, 19, -4.499993141523e-01, 2.123891731140e-06, 2.0803e+01, 6.5782e-01, + 2DIAGNOSTIC, 20, -4.499993193248e-01, 1.591498117196e-06, 2.1488e+01, 6.8459e-01, + 2DIAGNOSTIC, 21, -4.499993278851e-01, 1.516169651508e-06, 2.2131e+01, 6.4337e-01, + 2DIAGNOSTIC, 22, -4.499993412418e-01, 1.447961932459e-06, 2.2784e+01, 6.5305e-01, + 2DIAGNOSTIC, 23, -4.499993600397e-01, 1.386030608438e-06, 2.3445e+01, 6.6014e-01, + 2DIAGNOSTIC, 24, -4.499993880113e-01, 1.329736058382e-06, 2.4078e+01, 6.3355e-01, + 2DIAGNOSTIC, 25, -4.499994186784e-01, 1.278331849194e-06, 2.4802e+01, 7.2428e-01, + 2DIAGNOSTIC, 26, -4.499994244734e-01, 1.230488063296e-06, 2.6109e+01, 1.3071e+00, + 2DIAGNOSTIC, 27, -4.499994244834e-01, 1.185576844649e-06, 2.8175e+01, 2.0651e+00, + 2DIAGNOSTIC, 28, -4.499994244834e-01, 1.143233460156e-06, 2.8932e+01, 7.5745e-01, + 2DIAGNOSTIC, 29, -4.499994244834e-01, 1.103204323123e-06, 2.9634e+01, 7.0158e-01, + 2DIAGNOSTIC, 30, -4.499994244834e-01, 1.065361031227e-06, 3.0357e+01, 7.2298e-01, + 2DIAGNOSTIC, 31, -4.499994244834e-01, 1.029672245453e-06, 3.1118e+01, 7.6126e-01, + Elapsed time (stage 1): 3.1521e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.229685933343e-01, 1.797693134862e+308, 2.5812e-01, 2.5812e-01, + 1DIAGNOSTIC, 2, -9.375578283307e-01, 1.797693134862e+308, 3.5930e-01, 1.0118e-01, + 1DIAGNOSTIC, 3, -9.473947278734e-01, 1.797693134862e+308, 4.5844e-01, 9.9139e-02, + 1DIAGNOSTIC, 4, -9.537944247735e-01, 1.797693134862e+308, 5.6162e-01, 1.0318e-01, + 1DIAGNOSTIC, 5, -9.582618857804e-01, 1.797693134862e+308, 6.6235e-01, 1.0072e-01, + 1DIAGNOSTIC, 6, -9.615435411389e-01, 1.797693134862e+308, 7.6926e-01, 1.0692e-01, + 1DIAGNOSTIC, 7, -9.643713153203e-01, 1.797693134862e+308, 8.6920e-01, 9.9941e-02, + 1DIAGNOSTIC, 8, -9.665719518681e-01, 1.797693134862e+308, 9.7030e-01, 1.0110e-01, + 1DIAGNOSTIC, 9, -9.680730486036e-01, 1.797693134862e+308, 1.0676e+00, 9.7262e-02, + 1DIAGNOSTIC, 10, -9.686200641178e-01, 2.719172242099e-03, 1.1727e+00, 1.0511e-01, + 1DIAGNOSTIC, 11, -9.687980998487e-01, 1.736460344317e-03, 1.2759e+00, 1.0324e-01, + 1DIAGNOSTIC, 12, -9.690038332598e-01, 1.125975843219e-03, 1.3815e+00, 1.0559e-01, + 1DIAGNOSTIC, 13, -9.689649487892e-01, 7.298762681023e-04, 1.4882e+00, 1.0669e-01, + 1DIAGNOSTIC, 14, -9.690437711616e-01, 4.605740175823e-04, 1.5961e+00, 1.0791e-01, + 1DIAGNOSTIC, 15, -9.689754398073e-01, 2.718149528583e-04, 1.6983e+00, 1.0223e-01, + 1DIAGNOSTIC, 16, -9.689504771791e-01, 1.417782621312e-04, 1.8020e+00, 1.0365e-01, + 1DIAGNOSTIC, 17, -9.689236157184e-01, 6.237589426267e-05, 1.9053e+00, 1.0336e-01, + 1DIAGNOSTIC, 18, -9.689261215444e-01, 2.190582786633e-05, 2.0108e+00, 1.0543e-01, + 1DIAGNOSTIC, 19, -9.688854543794e-01, 6.398082379962e-06, 2.1156e+00, 1.0484e-01, + 1DIAGNOSTIC, 20, -9.688497726966e-01, -4.542827784504e-07, 2.2206e+00, 1.0500e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.287608506221e-01, 1.797693134862e+308, 3.0592e+00, 8.3859e-01, + 1DIAGNOSTIC, 2, -9.324810354729e-01, 1.797693134862e+308, 3.7534e+00, 6.9424e-01, + 1DIAGNOSTIC, 3, -9.365495225937e-01, 1.797693134862e+308, 4.4408e+00, 6.8739e-01, + 1DIAGNOSTIC, 4, -9.400511774848e-01, 1.797693134862e+308, 5.1119e+00, 6.7105e-01, + 1DIAGNOSTIC, 5, -9.426159592581e-01, 1.797693134862e+308, 5.7830e+00, 6.7117e-01, + 1DIAGNOSTIC, 6, -9.451690646766e-01, 1.797693134862e+308, 6.5309e+00, 7.4788e-01, + 1DIAGNOSTIC, 7, -9.474344331685e-01, 1.797693134862e+308, 7.2102e+00, 6.7927e-01, + 1DIAGNOSTIC, 8, -9.493061730748e-01, 1.797693134862e+308, 7.8816e+00, 6.7144e-01, + 1DIAGNOSTIC, 9, -9.509131228990e-01, 1.797693134862e+308, 8.5672e+00, 6.8554e-01, + 1DIAGNOSTIC, 10, -9.521820239811e-01, 1.581679317644e-03, 9.2455e+00, 6.7832e-01, + 1DIAGNOSTIC, 11, -9.532735391237e-01, 1.250863041115e-03, 9.9354e+00, 6.8995e-01, + 1DIAGNOSTIC, 12, -9.542219452862e-01, 9.789752734799e-04, 1.0620e+01, 6.8490e-01, + 1DIAGNOSTIC, 13, -9.550456354246e-01, 7.727864766689e-04, 1.1306e+01, 6.8522e-01, + 1DIAGNOSTIC, 14, -9.557493769410e-01, 6.158024842477e-04, 1.2003e+01, 6.9758e-01, + 1DIAGNOSTIC, 15, -9.563556757598e-01, 4.865952651735e-04, 1.2686e+01, 6.8312e-01, + 1DIAGNOSTIC, 16, -9.568949705163e-01, 3.865507957402e-04, 1.3410e+01, 7.2343e-01, + 1DIAGNOSTIC, 17, -9.573780530794e-01, 3.108838764840e-04, 1.4117e+01, 7.0703e-01, + 1DIAGNOSTIC, 18, -9.578057092897e-01, 2.529396605902e-04, 1.4811e+01, 6.9419e-01, + 1DIAGNOSTIC, 19, -9.581864996608e-01, 2.088616766546e-04, 1.5524e+01, 7.1322e-01, + 1DIAGNOSTIC, 20, -9.585282717546e-01, 1.738070778051e-04, 1.6243e+01, 7.1856e-01, + 1DIAGNOSTIC, 21, -9.588239197115e-01, 1.456036655416e-04, 1.6927e+01, 6.8469e-01, + 1DIAGNOSTIC, 22, -9.590812864780e-01, 1.227246072598e-04, 1.7614e+01, 6.8656e-01, + 1DIAGNOSTIC, 23, -9.593019488004e-01, 1.039184666791e-04, 1.8303e+01, 6.8878e-01, + 1DIAGNOSTIC, 24, -9.594968519439e-01, 8.814139754834e-05, 1.8978e+01, 6.7481e-01, + 1DIAGNOSTIC, 25, -9.596778775091e-01, 7.478021892401e-05, 1.9656e+01, 6.7858e-01, + 1DIAGNOSTIC, 26, -9.598276972934e-01, 6.335659862706e-05, 2.0389e+01, 7.3336e-01, + 1DIAGNOSTIC, 27, -9.599591708310e-01, 5.365019570185e-05, 2.1068e+01, 6.7839e-01, + 1DIAGNOSTIC, 28, -9.600691039265e-01, 4.535718630819e-05, 2.1785e+01, 7.1685e-01, + 1DIAGNOSTIC, 29, -9.601749344976e-01, 3.841120294992e-05, 2.2505e+01, 7.2069e-01, + 1DIAGNOSTIC, 30, -9.602803545010e-01, 3.279483898490e-05, 2.3243e+01, 7.3711e-01, + 1DIAGNOSTIC, 31, -9.603599633216e-01, 2.810074128285e-05, 2.3942e+01, 6.9961e-01, + 1DIAGNOSTIC, 32, -9.604317106473e-01, 2.417143871162e-05, 2.4643e+01, 7.0074e-01, + 1DIAGNOSTIC, 33, -9.604938604273e-01, 2.081123436222e-05, 2.5330e+01, 6.8764e-01, + 1DIAGNOSTIC, 34, -9.605487306284e-01, 1.792572143949e-05, 2.6019e+01, 6.8805e-01, + 1DIAGNOSTIC, 35, -9.606031924848e-01, 1.557136679878e-05, 2.6700e+01, 6.8144e-01, + 1DIAGNOSTIC, 36, -9.606500058258e-01, 1.356054011160e-05, 2.7367e+01, 6.6661e-01, + 1DIAGNOSTIC, 37, -9.606954607650e-01, 1.186393565398e-05, 2.8041e+01, 6.7439e-01, + 1DIAGNOSTIC, 38, -9.607280834943e-01, 1.031251530978e-05, 2.8733e+01, 6.9247e-01, + 1DIAGNOSTIC, 39, -9.607698149202e-01, 9.050833104540e-06, 2.9410e+01, 6.7654e-01, + 1DIAGNOSTIC, 40, -9.608050504817e-01, 8.101423948473e-06, 3.0088e+01, 6.7839e-01, + 1DIAGNOSTIC, 41, -9.608375415627e-01, 7.304425842177e-06, 3.0763e+01, 6.7458e-01, + 1DIAGNOSTIC, 42, -9.608686153220e-01, 6.643303198581e-06, 3.1513e+01, 7.4981e-01, + 1DIAGNOSTIC, 43, -9.609036039833e-01, 6.116804345407e-06, 3.2245e+01, 7.3239e-01, + 1DIAGNOSTIC, 44, -9.609209932866e-01, 5.580547761990e-06, 3.2929e+01, 6.8345e-01, + 1DIAGNOSTIC, 45, -9.609453750679e-01, 5.120629373207e-06, 3.3661e+01, 7.3194e-01, + 1DIAGNOSTIC, 46, -9.609680096850e-01, 4.701820443050e-06, 3.4418e+01, 7.5700e-01, + 1DIAGNOSTIC, 47, -9.609862342926e-01, 4.315872198138e-06, 3.5130e+01, 7.1251e-01, + 1DIAGNOSTIC, 48, -9.610018369867e-01, 3.891326273944e-06, 3.5834e+01, 7.0404e-01, + 1DIAGNOSTIC, 49, -9.610187253156e-01, 3.527943607105e-06, 3.6527e+01, 6.9325e-01, + 1DIAGNOSTIC, 50, -9.610286618606e-01, 3.168904843739e-06, 3.7212e+01, 6.8468e-01, + 1DIAGNOSTIC, 51, -9.610493387790e-01, 2.888135269542e-06, 3.7894e+01, 6.8205e-01, + 1DIAGNOSTIC, 52, -9.610638071088e-01, 2.655654874013e-06, 3.8580e+01, 6.8606e-01, + 1DIAGNOSTIC, 53, -9.610766926666e-01, 2.503290559640e-06, 3.9275e+01, 6.9472e-01, + 1DIAGNOSTIC, 54, -9.610829715018e-01, 2.302420654521e-06, 3.9969e+01, 6.9449e-01, + 1DIAGNOSTIC, 55, -9.610951478175e-01, 2.140669424458e-06, 4.0651e+01, 6.8173e-01, + 1DIAGNOSTIC, 56, -9.611060225438e-01, 2.009716656617e-06, 4.1351e+01, 6.9991e-01, + 1DIAGNOSTIC, 57, -9.611117872675e-01, 1.867460082402e-06, 4.2033e+01, 6.8250e-01, + 1DIAGNOSTIC, 58, -9.611233385974e-01, 1.742787524277e-06, 4.2727e+01, 6.9325e-01, + 1DIAGNOSTIC, 59, -9.611333952671e-01, 1.643001913521e-06, 4.3423e+01, 6.9589e-01, + 1DIAGNOSTIC, 60, -9.611351413135e-01, 1.495820815767e-06, 4.4110e+01, 6.8728e-01, + 1DIAGNOSTIC, 61, -9.611436372868e-01, 1.402125771068e-06, 4.4797e+01, 6.8741e-01, + 1DIAGNOSTIC, 62, -9.611515853824e-01, 1.332708712914e-06, 4.5484e+01, 6.8649e-01, + 1DIAGNOSTIC, 63, -9.611570605015e-01, 1.272391891023e-06, 4.6169e+01, 6.8507e-01, + 1DIAGNOSTIC, 64, -9.611639712361e-01, 1.200241608625e-06, 4.6853e+01, 6.8456e-01, + 1DIAGNOSTIC, 65, -9.611721145339e-01, 1.154907502660e-06, 4.7538e+01, 6.8432e-01, + 1DIAGNOSTIC, 66, -9.611798033298e-01, 1.130086444309e-06, 4.8231e+01, 6.9326e-01, + 1DIAGNOSTIC, 67, -9.611870900909e-01, 1.099911931587e-06, 4.8919e+01, 6.8761e-01, + 1DIAGNOSTIC, 68, -9.611911750082e-01, 1.077693919299e-06, 4.9601e+01, 6.8188e-01, + 1DIAGNOSTIC, 69, -9.611966507861e-01, 1.064809058012e-06, 5.0286e+01, 6.8580e-01, + 1DIAGNOSTIC, 70, -9.612028559592e-01, 1.026955005182e-06, 5.0977e+01, 6.9111e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.141188521025e-01, 1.797693134862e+308, 5.6804e+01, 5.8269e+00, + 1DIAGNOSTIC, 2, -9.174331854373e-01, 1.797693134862e+308, 6.2282e+01, 5.4780e+00, + 1DIAGNOSTIC, 3, -9.212880995511e-01, 1.797693134862e+308, 6.7803e+01, 5.5208e+00, + 1DIAGNOSTIC, 4, -9.244310358137e-01, 1.797693134862e+308, 7.3382e+01, 5.5793e+00, + 1DIAGNOSTIC, 5, -9.269968862883e-01, 1.797693134862e+308, 7.8906e+01, 5.5234e+00, + 1DIAGNOSTIC, 6, -9.291359205512e-01, 1.797693134862e+308, 8.4579e+01, 5.6731e+00, + 1DIAGNOSTIC, 7, -9.309588148438e-01, 1.797693134862e+308, 9.0072e+01, 5.4927e+00, + 1DIAGNOSTIC, 8, -9.325470065826e-01, 1.797693134862e+308, 9.5660e+01, 5.5883e+00, + 1DIAGNOSTIC, 9, -9.339686162932e-01, 1.797693134862e+308, 1.0131e+02, 5.6523e+00, + 1DIAGNOSTIC, 10, -9.352281060870e-01, 1.440489901574e-03, 1.0686e+02, 5.5458e+00, + 1DIAGNOSTIC, 11, -9.361894668659e-01, 1.131765656725e-03, 1.1246e+02, 5.5970e+00, + 1DIAGNOSTIC, 12, -9.370279456879e-01, 8.780445967183e-04, 1.1799e+02, 5.5389e+00, + 1DIAGNOSTIC, 13, -9.377803244231e-01, 6.918038016335e-04, 1.2355e+02, 5.5522e+00, + 1DIAGNOSTIC, 14, -9.384657531506e-01, 5.523452258017e-04, 1.2905e+02, 5.5075e+00, + 1DIAGNOSTIC, 15, -9.389760994272e-01, 4.432722072816e-04, 1.3472e+02, 5.6657e+00, + 1DIAGNOSTIC, 16, -9.394668455718e-01, 3.571579805851e-04, 1.4044e+02, 5.7169e+00, + 1DIAGNOSTIC, 17, -9.399464853916e-01, 2.894541447932e-04, 1.4597e+02, 5.5337e+00, + 1DIAGNOSTIC, 18, -9.404252843960e-01, 2.373296835582e-04, 1.5146e+02, 5.4856e+00, + 1DIAGNOSTIC, 19, -9.409059707580e-01, 1.990020652148e-04, 1.5693e+02, 5.4750e+00, + 1DIAGNOSTIC, 20, -9.413791685113e-01, 1.723247865222e-04, 1.6248e+02, 5.5475e+00, + 1DIAGNOSTIC, 21, -9.418204053172e-01, 1.524219296963e-04, 1.6794e+02, 5.4581e+00, + 1DIAGNOSTIC, 22, -9.422235837828e-01, 1.372200289883e-04, 1.7335e+02, 5.4166e+00, + 1DIAGNOSTIC, 23, -9.425767870344e-01, 1.250710290405e-04, 1.7882e+02, 5.4637e+00, + 1DIAGNOSTIC, 24, -9.428906060185e-01, 1.148815490265e-04, 1.8427e+02, 5.4506e+00, + 1DIAGNOSTIC, 25, -9.431709054176e-01, 1.043477293991e-04, 1.8980e+02, 5.5305e+00, + 1DIAGNOSTIC, 26, -9.434235217065e-01, 9.352031035009e-05, 1.9527e+02, 5.4767e+00, + 1DIAGNOSTIC, 27, -9.436573928198e-01, 8.274194702097e-05, 2.0075e+02, 5.4730e+00, + 1DIAGNOSTIC, 28, -9.438697127353e-01, 7.245301641861e-05, 2.0617e+02, 5.4185e+00, + 1DIAGNOSTIC, 29, -9.440681710785e-01, 6.316870382951e-05, 2.1169e+02, 5.5195e+00, + 1DIAGNOSTIC, 30, -9.442521201004e-01, 5.520775735664e-05, 2.1718e+02, 5.4954e+00, + 1DIAGNOSTIC, 31, -9.444207229112e-01, 4.853455739873e-05, 2.2263e+02, 5.4540e+00, + 1DIAGNOSTIC, 32, -9.445791905678e-01, 4.304169986093e-05, 2.2809e+02, 5.4548e+00, + 1DIAGNOSTIC, 33, -9.447258704718e-01, 3.843509753041e-05, 2.3359e+02, 5.5016e+00, + 1DIAGNOSTIC, 34, -9.448514065361e-01, 3.441448999156e-05, 2.3901e+02, 5.4215e+00, + 1DIAGNOSTIC, 35, -9.449607150898e-01, 3.077965417998e-05, 2.4445e+02, 5.4349e+00, + 1DIAGNOSTIC, 36, -9.450566942555e-01, 2.740785935831e-05, 2.4985e+02, 5.4008e+00, + 1DIAGNOSTIC, 37, -9.451416792670e-01, 2.427562999989e-05, 2.5535e+02, 5.5004e+00, + 1DIAGNOSTIC, 38, -9.452107550200e-01, 2.129388953969e-05, 2.6085e+02, 5.5040e+00, + 1DIAGNOSTIC, 39, -9.452716660084e-01, 1.850763988968e-05, 2.6633e+02, 5.4805e+00, + 1DIAGNOSTIC, 40, -9.453281265507e-01, 1.597477708710e-05, 2.7182e+02, 5.4847e+00, + 1DIAGNOSTIC, 41, -9.453770119677e-01, 1.370383191832e-05, 2.7729e+02, 5.4717e+00, + 1DIAGNOSTIC, 42, -9.454182885674e-01, 1.172845897437e-05, 2.8275e+02, 5.4582e+00, + 1DIAGNOSTIC, 43, -9.454517840373e-01, 1.005160080884e-05, 2.8818e+02, 5.4289e+00, + 1DIAGNOSTIC, 44, -9.454796321327e-01, 8.604904786443e-06, 2.9357e+02, 5.3950e+00, + 1DIAGNOSTIC, 45, -9.455001689335e-01, 7.331456878965e-06, 2.9902e+02, 5.4446e+00, + 1DIAGNOSTIC, 46, -9.455165220607e-01, 6.209290444134e-06, 3.0443e+02, 5.4156e+00, + 1DIAGNOSTIC, 47, -9.455306916670e-01, 5.238577207113e-06, 3.0989e+02, 5.4615e+00, + 1DIAGNOSTIC, 48, -9.455385002578e-01, 4.350512256442e-06, 3.1533e+02, 5.4405e+00, + 1DIAGNOSTIC, 49, -9.455469803560e-01, 3.569252916898e-06, 3.2080e+02, 5.4638e+00, + 1DIAGNOSTIC, 50, -9.455508461706e-01, 2.900017201105e-06, 3.2622e+02, 5.4265e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.076490700021e-01, 1.797693134862e+308, 3.7137e+02, 4.5145e+01, + 1DIAGNOSTIC, 2, -9.087065862138e-01, 1.797693134862e+308, 4.1554e+02, 4.4167e+01, + 1DIAGNOSTIC, 3, -9.099732574662e-01, 1.797693134862e+308, 4.5989e+02, 4.4356e+01, + 1DIAGNOSTIC, 4, -9.111285347616e-01, 1.797693134862e+308, 5.0443e+02, 4.4536e+01, + 1DIAGNOSTIC, 5, -9.121571585478e-01, 1.797693134862e+308, 5.4939e+02, 4.4963e+01, + 1DIAGNOSTIC, 6, -9.131213624072e-01, 1.797693134862e+308, 5.9356e+02, 4.4164e+01, + 1DIAGNOSTIC, 7, -9.140453021134e-01, 1.797693134862e+308, 6.3777e+02, 4.4217e+01, + 1DIAGNOSTIC, 8, -9.149670995322e-01, 1.797693134862e+308, 6.8201e+02, 4.4236e+01, + 1DIAGNOSTIC, 9, -9.158975403603e-01, 1.797693134862e+308, 7.2630e+02, 4.4294e+01, + 1DIAGNOSTIC, 10, -9.168818750335e-01, 6.430234354609e-04, 7.7036e+02, 4.4063e+01, + 1DIAGNOSTIC, 11, -9.178252989687e-01, 5.679802710493e-04, 8.1529e+02, 4.4927e+01, + 1DIAGNOSTIC, 12, -9.189110017605e-01, 5.096529279965e-04, 8.5946e+02, 4.4172e+01, + 1DIAGNOSTIC, 13, -9.198257013679e-01, 4.659957405803e-04, 9.0352e+02, 4.4056e+01, + 1DIAGNOSTIC, 14, -9.208183881243e-01, 4.336660787831e-04, 9.4782e+02, 4.4295e+01, + 1DIAGNOSTIC, 15, -9.217555408928e-01, 4.064816697393e-04, 9.9210e+02, 4.4281e+01, + 1DIAGNOSTIC, 16, -9.225496261750e-01, 3.792946346945e-04, 1.0364e+03, 4.4266e+01, + 1DIAGNOSTIC, 17, -9.233023230372e-01, 3.508414326259e-04, 1.0810e+03, 4.4591e+01, + 1DIAGNOSTIC, 18, -9.240094259993e-01, 3.210733914337e-04, 1.1253e+03, 4.4317e+01, + 1DIAGNOSTIC, 19, -9.247004858890e-01, 2.909918928084e-04, 1.1698e+03, 4.4514e+01, + 1DIAGNOSTIC, 20, -9.252500596744e-01, 2.605116752694e-04, 1.2141e+03, 4.4357e+01, + Elapsed time (stage 2): 1215 + + +Total elapsed time: 1272 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:24 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:24 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:25 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:30 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:33 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:33 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7276 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:33 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:36 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:36 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7327 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:36 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:39 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:39 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7370 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:39 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7375 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:40 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:43 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:45 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:45 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:46 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:47 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:49 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:49 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:50 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:51 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:53 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:53 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:15 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC001 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:15 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC001 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:16 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC001 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:16 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8009 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:18 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:18 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8040 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:19 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:20 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC001_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 74.333 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/logs/proc_func_18-03-2024-5101.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:24 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC001 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/QC/sub-PNC001_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC001* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 74.383 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC001_ses-02 +========================reprocessing without filter=================== +sub-PNC001_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC001 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC001 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC001 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC001 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:29 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:29 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz is 38.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:30:39 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:32:48 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:33:02 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.35 (mm) at sub-brick 114 +++ Max delta displ in automask = 0.29 (mm) at sub-brick 189 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:46:24 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:46:50 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz is 38.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:49:05 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:51:37 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz is 38.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:53:59 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.731 -3.215 2.300 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 83.5 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.878 -4.386 4.300 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 97.6 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:59:49 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:00:53 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x56469608da50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [108.704, 59.2681, -109.004] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564695f04730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5646960a4350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x564696094600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.3624, 122.53, -125.641] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564696096e40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5646968a0f50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x56469689f270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [108.704, 59.2681, -109.004] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564696093640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5646973cb1c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x56469689ea00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.3624, 122.53, -125.641] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56469609a390) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x564697bc5300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.520512414807e-01, 1.797693134862e+308, 6.9439e-02, 6.9438e-02, + 2DIAGNOSTIC, 2, -7.542820326588e-01, 1.797693134862e+308, 7.1835e-02, 2.3959e-03, + 2DIAGNOSTIC, 3, -7.575725197056e-01, 1.797693134862e+308, 7.5384e-02, 3.5489e-03, + 2DIAGNOSTIC, 4, -7.657059549845e-01, 1.797693134862e+308, 7.8513e-02, 3.1290e-03, + 2DIAGNOSTIC, 5, -7.753983641018e-01, 1.797693134862e+308, 8.1005e-02, 2.4920e-03, + 2DIAGNOSTIC, 6, -7.852219943384e-01, 1.797693134862e+308, 8.3866e-02, 2.8610e-03, + 2DIAGNOSTIC, 7, -7.906619372037e-01, 1.797693134862e+308, 8.6488e-02, 2.6221e-03, + 2DIAGNOSTIC, 8, -8.199074174899e-01, 1.797693134862e+308, 9.2953e-02, 6.4650e-03, + 2DIAGNOSTIC, 9, -8.452431750762e-01, 1.797693134862e+308, 9.7346e-02, 4.3929e-03, + 2DIAGNOSTIC, 10, -8.573764149466e-01, 8.699461758847e-03, 1.0335e-01, 6.0050e-03, + 2DIAGNOSTIC, 11, -8.597115228211e-01, 8.764244626052e-03, 1.0675e-01, 3.3960e-03, + 2DIAGNOSTIC, 12, -8.739597049050e-01, 8.523370432398e-03, 1.0889e-01, 2.1439e-03, + 2DIAGNOSTIC, 13, -8.748709326952e-01, 7.651164961300e-03, 1.1196e-01, 3.0711e-03, + 2DIAGNOSTIC, 14, -8.650803240262e-01, 6.174545827258e-03, 1.1485e-01, 2.8892e-03, + 2DIAGNOSTIC, 15, -8.797751850128e-01, 4.916838518680e-03, 1.1717e-01, 2.3220e-03, + 2DIAGNOSTIC, 16, -8.849292750352e-01, 3.700525828917e-03, 1.2139e-01, 4.2150e-03, + 2DIAGNOSTIC, 17, -8.918247374296e-01, 2.532893826082e-03, 1.2795e-01, 6.5649e-03, + 2DIAGNOSTIC, 18, -9.063794420409e-01, 2.095074905046e-03, 1.3510e-01, 7.1449e-03, + 2DIAGNOSTIC, 19, -9.075650437072e-01, 1.985699558264e-03, 1.3871e-01, 3.6130e-03, + 2DIAGNOSTIC, 20, -9.120765950054e-01, 1.988857250923e-03, 1.4531e-01, 6.5989e-03, + 2DIAGNOSTIC, 21, -9.168605293425e-01, 1.911623925166e-03, 1.4960e-01, 4.2861e-03, + 2DIAGNOSTIC, 22, -9.328713163091e-01, 2.122666109513e-03, 1.5981e-01, 1.0218e-02, + 2DIAGNOSTIC, 23, -9.378318765535e-01, 2.199943332659e-03, 1.6701e-01, 7.2000e-03, + 2DIAGNOSTIC, 24, -9.404972268664e-01, 1.962927774481e-03, 1.7058e-01, 3.5701e-03, + 2DIAGNOSTIC, 25, -9.411553000272e-01, 1.771080337364e-03, 1.7535e-01, 4.7660e-03, + 2DIAGNOSTIC, 26, -9.412373478496e-01, 1.495227635809e-03, 1.7876e-01, 3.4151e-03, + 2DIAGNOSTIC, 27, -9.424248812513e-01, 1.192752864663e-03, 1.8306e-01, 4.2961e-03, + 2DIAGNOSTIC, 28, -9.425702607516e-01, 9.731018396953e-04, 1.8538e-01, 2.3150e-03, + 2DIAGNOSTIC, 29, -9.438824777701e-01, 7.080335205806e-04, 1.8836e-01, 2.9800e-03, + 2DIAGNOSTIC, 30, -9.443010478188e-01, 4.501275816054e-04, 1.9175e-01, 3.3948e-03, + 2DIAGNOSTIC, 31, -9.444235490098e-01, 2.155395039684e-04, 1.9623e-01, 4.4839e-03, + 2DIAGNOSTIC, 32, -9.434834963756e-01, 1.283066438197e-04, 1.9994e-01, 3.7081e-03, + 2DIAGNOSTIC, 33, -9.424674321892e-01, 7.297868937606e-05, 2.0361e-01, 3.6638e-03, + 2DIAGNOSTIC, 34, -9.425351809301e-01, 4.025757249006e-05, 2.0525e-01, 1.6420e-03, + 2DIAGNOSTIC, 35, -9.428251758695e-01, 1.429004882443e-05, 2.0682e-01, 1.5702e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.199024648572e-01, 1.797693134862e+308, 3.0673e-01, 9.9909e-02, + 2DIAGNOSTIC, 2, -5.206968349230e-01, 1.797693134862e+308, 3.1388e-01, 7.1549e-03, + 2DIAGNOSTIC, 3, -5.236769280076e-01, 1.797693134862e+308, 3.2118e-01, 7.2930e-03, + 2DIAGNOSTIC, 4, -5.273889361588e-01, 1.797693134862e+308, 3.2963e-01, 8.4550e-03, + 2DIAGNOSTIC, 5, -5.301132095043e-01, 1.797693134862e+308, 3.4143e-01, 1.1802e-02, + 2DIAGNOSTIC, 6, -5.330629193050e-01, 1.797693134862e+308, 3.5441e-01, 1.2977e-02, + 2DIAGNOSTIC, 7, -5.434115842886e-01, 1.797693134862e+308, 3.6509e-01, 1.0681e-02, + 2DIAGNOSTIC, 8, -5.506148129883e-01, 1.797693134862e+308, 3.7590e-01, 1.0809e-02, + 2DIAGNOSTIC, 9, -5.545137565256e-01, 1.797693134862e+308, 3.8289e-01, 6.9890e-03, + 2DIAGNOSTIC, 10, -5.556751844097e-01, 4.892684817204e-03, 3.9070e-01, 7.8142e-03, + 2DIAGNOSTIC, 11, -5.576373039754e-01, 4.576833277751e-03, 3.9722e-01, 6.5200e-03, + 2DIAGNOSTIC, 12, -5.639946319809e-01, 4.208098839023e-03, 4.0166e-01, 4.4420e-03, + 2DIAGNOSTIC, 13, -5.676479914255e-01, 3.771938255181e-03, 4.0623e-01, 4.5681e-03, + 2DIAGNOSTIC, 14, -5.716946903428e-01, 3.348557099651e-03, 4.1078e-01, 4.5488e-03, + 2DIAGNOSTIC, 15, -5.778394624709e-01, 2.990395296279e-03, 4.1639e-01, 5.6119e-03, + 2DIAGNOSTIC, 16, -5.839604246736e-01, 2.689323041577e-03, 4.1969e-01, 3.2940e-03, + 2DIAGNOSTIC, 17, -5.852805561259e-01, 2.523843635587e-03, 4.2247e-01, 2.7828e-03, + 2DIAGNOSTIC, 18, -5.912384338209e-01, 2.519113154476e-03, 4.2491e-01, 2.4409e-03, + 2DIAGNOSTIC, 19, -6.062823314153e-01, 2.787051516396e-03, 4.3066e-01, 5.7480e-03, + 2DIAGNOSTIC, 20, -6.064118091035e-01, 2.790914349464e-03, 4.3308e-01, 2.4250e-03, + 2DIAGNOSTIC, 21, -6.071334707170e-01, 2.601917980207e-03, 4.3563e-01, 2.5489e-03, + 2DIAGNOSTIC, 22, -6.082441739732e-01, 2.365380019877e-03, 4.3791e-01, 2.2769e-03, + 2DIAGNOSTIC, 23, -6.095655402232e-01, 2.036447192408e-03, 4.4759e-01, 9.6812e-03, + 2DIAGNOSTIC, 24, -6.114954811045e-01, 1.663734895930e-03, 4.6881e-01, 2.1218e-02, + 2DIAGNOSTIC, 25, -6.123898122723e-01, 1.305188597724e-03, 4.7551e-01, 6.7010e-03, + 2DIAGNOSTIC, 26, -6.129868813494e-01, 9.880678579319e-04, 4.8947e-01, 1.3960e-02, + 2DIAGNOSTIC, 27, -6.141683524121e-01, 6.496177151698e-04, 4.9556e-01, 6.0861e-03, + 2DIAGNOSTIC, 28, -6.162359983982e-01, 4.098102586147e-04, 5.0154e-01, 5.9798e-03, + 2DIAGNOSTIC, 29, -6.194837504581e-01, 4.599191060359e-04, 5.0741e-01, 5.8751e-03, + 2DIAGNOSTIC, 30, -6.253911633870e-01, 5.611718212650e-04, 5.1471e-01, 7.2961e-03, + 2DIAGNOSTIC, 31, -6.281634006144e-01, 6.562011699678e-04, 5.2402e-01, 9.3131e-03, + 2DIAGNOSTIC, 32, -6.314911004007e-01, 7.509285936574e-04, 5.2988e-01, 5.8560e-03, + 2DIAGNOSTIC, 33, -6.429546121884e-01, 9.564007085665e-04, 5.4483e-01, 1.4949e-02, + 2DIAGNOSTIC, 34, -6.475215738227e-01, 1.146206795957e-03, 5.5197e-01, 7.1428e-03, + 2DIAGNOSTIC, 35, -6.535816673167e-01, 1.311131943767e-03, 5.5749e-01, 5.5170e-03, + 2DIAGNOSTIC, 36, -6.603593840475e-01, 1.440658938091e-03, 5.6168e-01, 4.1921e-03, + 2DIAGNOSTIC, 37, -6.673741926617e-01, 1.530948185462e-03, 5.6534e-01, 3.6640e-03, + 2DIAGNOSTIC, 38, -6.707534123514e-01, 1.536435936137e-03, 5.8383e-01, 1.8489e-02, + 2DIAGNOSTIC, 39, -6.720088087046e-01, 1.449339301652e-03, 5.9494e-01, 1.1107e-02, + 2DIAGNOSTIC, 40, -6.744675322199e-01, 1.330454028472e-03, 6.0638e-01, 1.1439e-02, + 2DIAGNOSTIC, 41, -6.768853313986e-01, 1.151108829724e-03, 6.2095e-01, 1.4576e-02, + 2DIAGNOSTIC, 42, -6.790005993605e-01, 9.292358598395e-04, 6.4799e-01, 2.7041e-02, + 2DIAGNOSTIC, 43, -6.796569184913e-01, 7.632963225652e-04, 6.6627e-01, 1.8280e-02, + 2DIAGNOSTIC, 44, -6.796203552820e-01, 5.819006793803e-04, 6.7697e-01, 1.0697e-02, + 2DIAGNOSTIC, 45, -6.798173910989e-01, 4.186900730706e-04, 6.8416e-01, 7.1869e-03, + 2DIAGNOSTIC, 46, -6.801778687979e-01, 2.942039114445e-04, 6.9132e-01, 7.1580e-03, + 2DIAGNOSTIC, 47, -6.805391208138e-01, 2.199139265639e-04, 6.9521e-01, 3.8941e-03, + 2DIAGNOSTIC, 48, -6.810940737207e-01, 1.664148041705e-04, 6.9811e-01, 2.8999e-03, + 2DIAGNOSTIC, 49, -6.812503187978e-01, 1.127504636821e-04, 7.0072e-01, 2.6078e-03, + 2DIAGNOSTIC, 50, -6.811639928285e-01, 7.247709861050e-05, 7.0338e-01, 2.6591e-03, + 2DIAGNOSTIC, 51, -6.811801630343e-01, 4.872503762389e-05, 7.0569e-01, 2.3181e-03, + 2DIAGNOSTIC, 52, -6.811940766503e-01, 4.006689111664e-05, 7.0798e-01, 2.2860e-03, + 2DIAGNOSTIC, 53, -6.812068600568e-01, 3.378092119222e-05, 7.1018e-01, 2.2039e-03, + 2DIAGNOSTIC, 54, -6.812247086722e-01, 2.442097521916e-05, 7.1236e-01, 2.1801e-03, + 2DIAGNOSTIC, 55, -6.812494169282e-01, 1.503812946863e-05, 7.1442e-01, 2.0549e-03, + 2DIAGNOSTIC, 56, -6.813692913161e-01, 8.559995729449e-06, 7.2951e-01, 1.5088e-02, + 2DIAGNOSTIC, 57, -6.813815449476e-01, 4.416899038823e-06, 7.4843e-01, 1.8922e-02, + 2DIAGNOSTIC, 58, -6.813877118367e-01, 4.449609569458e-06, 7.6033e-01, 1.1897e-02, + 2DIAGNOSTIC, 59, -6.815838340926e-01, 6.867591279165e-06, 7.8082e-01, 2.0494e-02, + 2DIAGNOSTIC, 60, -6.817167510359e-01, 8.899760656957e-06, 8.0264e-01, 2.1815e-02, + 2DIAGNOSTIC, 61, -6.817222026044e-01, 1.019526321618e-05, 8.1800e-01, 1.5362e-02, + 2DIAGNOSTIC, 62, -6.816582977888e-01, 1.018514288705e-05, 8.2544e-01, 7.4420e-03, + 2DIAGNOSTIC, 63, -6.817587361120e-01, 1.009959614515e-05, 8.3298e-01, 7.5431e-03, + 2DIAGNOSTIC, 64, -6.817696966458e-01, 9.256683963274e-06, 8.4030e-01, 7.3168e-03, + 2DIAGNOSTIC, 65, -6.818138857312e-01, 8.038388403294e-06, 8.4235e-01, 2.0549e-03, + 2DIAGNOSTIC, 66, -6.816722944175e-01, 6.010318439432e-06, 8.4447e-01, 2.1160e-03, + 2DIAGNOSTIC, 67, -6.816337854625e-01, 3.408769676316e-06, 8.4663e-01, 2.1620e-03, + 2DIAGNOSTIC, 68, -6.822714390199e-01, 4.838681481011e-06, 8.4904e-01, 2.4049e-03, + 2DIAGNOSTIC, 69, -6.833627976390e-01, 1.402447139863e-05, 8.5204e-01, 3.0048e-03, + 2DIAGNOSTIC, 70, -6.845145579992e-01, 2.971466865018e-05, 8.5456e-01, 2.5129e-03, + 2DIAGNOSTIC, 71, -6.846823400708e-01, 4.318264295783e-05, 8.5681e-01, 2.2531e-03, + 2DIAGNOSTIC, 72, -6.846865339314e-01, 5.190804848081e-05, 8.7092e-01, 1.4114e-02, + 2DIAGNOSTIC, 73, -6.847682659661e-01, 5.655990488362e-05, 8.7610e-01, 5.1730e-03, + 2DIAGNOSTIC, 74, -6.848214645483e-01, 5.588636434625e-05, 8.7934e-01, 3.2430e-03, + 2DIAGNOSTIC, 75, -6.849060629420e-01, 5.059240107072e-05, 8.8228e-01, 2.9421e-03, + 2DIAGNOSTIC, 76, -6.848699024944e-01, 3.968128237161e-05, 9.0504e-01, 2.2764e-02, + 2DIAGNOSTIC, 77, -6.849366352524e-01, 2.554428685634e-05, 9.0932e-01, 4.2791e-03, + 2DIAGNOSTIC, 78, -6.849757157658e-01, 1.314099052532e-05, 9.1512e-01, 5.7979e-03, + 2DIAGNOSTIC, 79, -6.850184514788e-01, 6.049047980197e-06, 9.2946e-01, 1.4336e-02, + 2DIAGNOSTIC, 80, -6.850435514059e-01, 5.119884892914e-06, 9.3683e-01, 7.3700e-03, + 2DIAGNOSTIC, 81, -6.850517024525e-01, 4.739146373714e-06, 9.4899e-01, 1.2158e-02, + 2DIAGNOSTIC, 82, -6.850553129074e-01, 3.989905278990e-06, 9.5475e-01, 5.7650e-03, + 2DIAGNOSTIC, 83, -6.850680400608e-01, 3.410034944838e-06, 9.5756e-01, 2.8050e-03, + 2DIAGNOSTIC, 84, -6.851938477527e-01, 3.483924750343e-06, 9.6030e-01, 2.7409e-03, + 2DIAGNOSTIC, 85, -6.851987972109e-01, 3.717016661131e-06, 9.6698e-01, 6.6800e-03, + 2DIAGNOSTIC, 86, -6.851987972102e-01, 3.440866454393e-06, 9.6900e-01, 2.0239e-03, + 2DIAGNOSTIC, 87, -6.851987972410e-01, 3.225231731687e-06, 9.7097e-01, 1.9720e-03, + 2DIAGNOSTIC, 88, -6.851987972930e-01, 2.929887881763e-06, 9.7310e-01, 2.1269e-03, + 2DIAGNOSTIC, 89, -6.851987973807e-01, 2.593952774528e-06, 9.8707e-01, 1.3972e-02, + 2DIAGNOSTIC, 90, -6.851987975284e-01, 2.172358659935e-06, 9.9712e-01, 1.0051e-02, + 2DIAGNOSTIC, 91, -6.851987977760e-01, 1.636509484922e-06, 1.0022e+00, 5.0571e-03, + 2DIAGNOSTIC, 92, -6.851987981887e-01, 1.013907363722e-06, 1.0085e+00, 6.3581e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.219573346791e-01, 1.797693134862e+308, 1.1373e+00, 1.2876e-01, + 2DIAGNOSTIC, 2, -5.230755050195e-01, 1.797693134862e+308, 1.1543e+00, 1.6980e-02, + 2DIAGNOSTIC, 3, -5.250766049580e-01, 1.797693134862e+308, 1.1767e+00, 2.2419e-02, + 2DIAGNOSTIC, 4, -5.277000094231e-01, 1.797693134862e+308, 1.1962e+00, 1.9539e-02, + 2DIAGNOSTIC, 5, -5.299436168027e-01, 1.797693134862e+308, 1.2294e+00, 3.3202e-02, + 2DIAGNOSTIC, 6, -5.317777422062e-01, 1.797693134862e+308, 1.2456e+00, 1.6143e-02, + 2DIAGNOSTIC, 7, -5.324057865804e-01, 1.797693134862e+308, 1.2835e+00, 3.7879e-02, + 2DIAGNOSTIC, 8, -5.327761655318e-01, 1.797693134862e+308, 1.3359e+00, 5.2477e-02, + 2DIAGNOSTIC, 9, -5.327776583395e-01, 1.797693134862e+308, 1.3545e+00, 1.8597e-02, + 2DIAGNOSTIC, 10, -5.329537021572e-01, 1.473981011039e-03, 1.3919e+00, 3.7353e-02, + 2DIAGNOSTIC, 11, -5.329875093433e-01, 1.066089818254e-03, 1.4241e+00, 3.2173e-02, + 2DIAGNOSTIC, 12, -5.329944708478e-01, 6.813264793172e-04, 1.4553e+00, 3.1273e-02, + 2DIAGNOSTIC, 13, -5.330062022053e-01, 3.769023514504e-04, 1.4885e+00, 3.3218e-02, + 2DIAGNOSTIC, 14, -5.330662628301e-01, 1.836609011469e-04, 1.5076e+00, 1.9045e-02, + 2DIAGNOSTIC, 15, -5.331282217745e-01, 8.057238790656e-05, 1.5396e+00, 3.2011e-02, + 2DIAGNOSTIC, 16, -5.332164407071e-01, 4.707927738495e-05, 1.5638e+00, 2.4201e-02, + 2DIAGNOSTIC, 17, -5.333819482445e-01, 3.811561316866e-05, 1.5866e+00, 2.2772e-02, + 2DIAGNOSTIC, 18, -5.339133756946e-01, 5.361040861417e-05, 1.6342e+00, 4.7638e-02, + 2DIAGNOSTIC, 19, -5.341794990305e-01, 6.970408197513e-05, 1.6679e+00, 3.3691e-02, + 2DIAGNOSTIC, 20, -5.342378148144e-01, 8.410749650085e-05, 1.6898e+00, 2.1873e-02, + 2DIAGNOSTIC, 21, -5.342826705963e-01, 9.167417089583e-05, 1.7297e+00, 3.9898e-02, + 2DIAGNOSTIC, 22, -5.343959600027e-01, 9.305661322778e-05, 1.7526e+00, 2.2928e-02, + 2DIAGNOSTIC, 23, -5.350100992118e-01, 1.000153351756e-04, 1.7921e+00, 3.9543e-02, + 2DIAGNOSTIC, 24, -5.352714712462e-01, 1.038537904679e-04, 1.8182e+00, 2.6077e-02, + 2DIAGNOSTIC, 25, -5.353313359328e-01, 1.005274043176e-04, 1.8470e+00, 2.8817e-02, + 2DIAGNOSTIC, 26, -5.353653275644e-01, 9.096628374824e-05, 1.9042e+00, 5.7113e-02, + 2DIAGNOSTIC, 27, -5.353582107504e-01, 7.657313393464e-05, 1.9448e+00, 4.0636e-02, + 2DIAGNOSTIC, 28, -5.353620087539e-01, 6.599820211570e-05, 1.9671e+00, 2.2349e-02, + 2DIAGNOSTIC, 29, -5.353505465796e-01, 5.461231078891e-05, 1.9793e+00, 1.2145e-02, + 2DIAGNOSTIC, 30, -5.353561194972e-01, 4.021393197616e-05, 2.0015e+00, 2.2187e-02, + 2DIAGNOSTIC, 31, -5.353577744912e-01, 2.397235853761e-05, 2.0308e+00, 2.9345e-02, + 2DIAGNOSTIC, 32, -5.353603920321e-01, 8.281942891791e-06, 2.0897e+00, 5.8845e-02, + 2DIAGNOSTIC, 33, -5.353650442914e-01, 2.759341172026e-06, 2.1131e+00, 2.3418e-02, + 2DIAGNOSTIC, 34, -5.353726413795e-01, 1.591555404176e-06, 2.1567e+00, 4.3614e-02, + 2DIAGNOSTIC, 35, -5.353886105323e-01, 1.566488073219e-06, 2.1995e+00, 4.2818e-02, + 2DIAGNOSTIC, 36, -5.354050249408e-01, 2.223063009961e-06, 2.2428e+00, 4.3337e-02, + 2DIAGNOSTIC, 37, -5.354355858231e-01, 3.049271071483e-06, 2.2563e+00, 1.3447e-02, + 2DIAGNOSTIC, 38, -5.355859413427e-01, 5.784602465263e-06, 2.2720e+00, 1.5704e-02, + 2DIAGNOSTIC, 39, -5.356467225336e-01, 8.527698697240e-06, 2.3145e+00, 4.2516e-02, + 2DIAGNOSTIC, 40, -5.357109842019e-01, 1.133199538479e-05, 2.3828e+00, 6.8289e-02, + 2DIAGNOSTIC, 41, -5.358560800323e-01, 1.491405119458e-05, 2.4046e+00, 2.1791e-02, + 2DIAGNOSTIC, 42, -5.361198794776e-01, 2.031284440181e-05, 2.4244e+00, 1.9797e-02, + 2DIAGNOSTIC, 43, -5.365841955965e-01, 2.930974961637e-05, 2.4570e+00, 3.2571e-02, + 2DIAGNOSTIC, 44, -5.368856345236e-01, 3.879283045983e-05, 2.4846e+00, 2.7684e-02, + 2DIAGNOSTIC, 45, -5.371233229061e-01, 4.723422412226e-05, 2.5062e+00, 2.1596e-02, + 2DIAGNOSTIC, 46, -5.371851157115e-01, 5.179100448023e-05, 2.5177e+00, 1.1492e-02, + 2DIAGNOSTIC, 47, -5.371950444476e-01, 5.168344015703e-05, 2.5387e+00, 2.0970e-02, + 2DIAGNOSTIC, 48, -5.372042351318e-01, 4.841886410038e-05, 2.5928e+00, 5.4136e-02, + 2DIAGNOSTIC, 49, -5.372017474868e-01, 4.131787039077e-05, 2.6271e+00, 3.4270e-02, + 2DIAGNOSTIC, 50, -5.372387925649e-01, 3.170001940355e-05, 2.6540e+00, 2.6886e-02, + 2DIAGNOSTIC, 51, -5.372285450729e-01, 2.089093590006e-05, 2.6854e+00, 3.1411e-02, + 2DIAGNOSTIC, 52, -5.372219290851e-01, 1.113140069772e-05, 2.7050e+00, 1.9617e-02, + 2DIAGNOSTIC, 53, -5.372366196290e-01, 5.498886584250e-06, 2.7269e+00, 2.1827e-02, + 2DIAGNOSTIC, 54, -5.372562128361e-01, 2.702974780631e-06, 2.7594e+00, 3.2520e-02, + 2DIAGNOSTIC, 55, -5.372662831376e-01, 2.178068344173e-06, 2.7790e+00, 1.9658e-02, + 2DIAGNOSTIC, 56, -5.372688032866e-01, 2.129813801540e-06, 2.8093e+00, 3.0320e-02, + 2DIAGNOSTIC, 57, -5.372785763281e-01, 2.124538996489e-06, 2.8359e+00, 2.6597e-02, + 2DIAGNOSTIC, 58, -5.372905674074e-01, 2.163096241490e-06, 2.8803e+00, 4.4382e-02, + 2DIAGNOSTIC, 59, -5.372567743732e-01, 1.701260534639e-06, 2.9041e+00, 2.3742e-02, + 2DIAGNOSTIC, 60, -5.372714763266e-01, 1.615000719987e-06, 2.9364e+00, 3.2349e-02, + 2DIAGNOSTIC, 61, -5.372727292398e-01, 1.348538768008e-06, 2.9655e+00, 2.9124e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.489503279160e-01, 1.797693134862e+308, 3.2880e+00, 3.2247e-01, + Elapsed time (stage 0): 3.3759e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.518923823222e-01, 1.797693134862e+308, 8.9200e-02, 8.9200e-02, + 2DIAGNOSTIC, 2, -9.557558176902e-01, 1.797693134862e+308, 9.3001e-02, 3.8011e-03, + 2DIAGNOSTIC, 3, -9.611358086316e-01, 1.797693134862e+308, 9.7724e-02, 4.7231e-03, + 2DIAGNOSTIC, 4, -9.664009438013e-01, 1.797693134862e+308, 1.0227e-01, 4.5450e-03, + 2DIAGNOSTIC, 5, -9.717158656501e-01, 1.797693134862e+308, 1.0715e-01, 4.8759e-03, + 2DIAGNOSTIC, 6, -9.836064758128e-01, 1.797693134862e+308, 1.1201e-01, 4.8680e-03, + 2DIAGNOSTIC, 7, -9.882822563528e-01, 1.797693134862e+308, 1.3136e-01, 1.9342e-02, + 2DIAGNOSTIC, 8, -9.971592924638e-01, 1.797693134862e+308, 1.3980e-01, 8.4419e-03, + 2DIAGNOSTIC, 9, -9.979678469603e-01, 1.797693134862e+308, 1.4468e-01, 4.8859e-03, + 2DIAGNOSTIC, 10, -1.002938130248e+00, 3.648397766226e-03, 1.5161e-01, 6.9299e-03, + 2DIAGNOSTIC, 11, -1.012308562076e+00, 3.371653627164e-03, 1.5394e-01, 2.3260e-03, + 2DIAGNOSTIC, 12, -1.021454363252e+00, 3.143418238440e-03, 1.5588e-01, 1.9431e-03, + 2DIAGNOSTIC, 13, -1.024842951030e+00, 2.859316640882e-03, 1.5735e-01, 1.4670e-03, + 2DIAGNOSTIC, 14, -1.026303848496e+00, 2.499540794408e-03, 1.5876e-01, 1.4100e-03, + 2DIAGNOSTIC, 15, -1.028515918145e+00, 2.103141408925e-03, 1.7026e-01, 1.1501e-02, + 2DIAGNOSTIC, 16, -1.029804959510e+00, 1.797050446585e-03, 1.7723e-01, 6.9692e-03, + 2DIAGNOSTIC, 17, -1.030175733187e+00, 1.441920328210e-03, 1.8488e-01, 7.6520e-03, + 2DIAGNOSTIC, 18, -1.029693118634e+00, 1.129530032531e-03, 1.8989e-01, 5.0130e-03, + 2DIAGNOSTIC, 19, -1.030341333240e+00, 7.700954396224e-04, 1.9572e-01, 5.8250e-03, + 2DIAGNOSTIC, 20, -1.030544465922e+00, 4.472896991156e-04, 2.0143e-01, 5.7080e-03, + 2DIAGNOSTIC, 21, -1.029633748904e+00, 2.255451599427e-04, 2.0718e-01, 5.7521e-03, + 2DIAGNOSTIC, 22, -1.030392796406e+00, 1.307701351245e-04, 2.1508e-01, 7.8988e-03, + 2DIAGNOSTIC, 23, -1.030545626908e+00, 7.563142386154e-05, 2.2242e-01, 7.3409e-03, + 2DIAGNOSTIC, 24, -1.035386170926e+00, 9.162084559181e-05, 2.2856e-01, 6.1409e-03, + 2DIAGNOSTIC, 25, -1.036393964378e+00, 1.322520918737e-04, 2.3562e-01, 7.0579e-03, + 2DIAGNOSTIC, 26, -1.039178199696e+00, 2.018770866184e-04, 2.4244e-01, 6.8181e-03, + 2DIAGNOSTIC, 27, -1.039084712176e+00, 2.504866107902e-04, 2.4834e-01, 5.9030e-03, + 2DIAGNOSTIC, 28, -1.038724987469e+00, 2.635705021448e-04, 2.5722e-01, 8.8849e-03, + 2DIAGNOSTIC, 29, -1.042207415215e+00, 2.905731459387e-04, 2.6240e-01, 5.1801e-03, + 2DIAGNOSTIC, 30, -1.045378381582e+00, 3.188283834056e-04, 2.6807e-01, 5.6639e-03, + 2DIAGNOSTIC, 31, -1.046161914604e+00, 3.135861148945e-04, 2.7331e-01, 5.2450e-03, + 2DIAGNOSTIC, 32, -1.048204277466e+00, 3.047576467799e-04, 2.8069e-01, 7.3769e-03, + 2DIAGNOSTIC, 33, -1.050811758812e+00, 2.903366038386e-04, 2.8363e-01, 2.9392e-03, + 2DIAGNOSTIC, 34, -1.050838772107e+00, 2.884780882966e-04, 2.8547e-01, 1.8449e-03, + 2DIAGNOSTIC, 35, -1.052453702666e+00, 2.795909278021e-04, 2.8706e-01, 1.5900e-03, + 2DIAGNOSTIC, 36, -1.053396923489e+00, 2.737368508752e-04, 2.8867e-01, 1.6091e-03, + 2DIAGNOSTIC, 37, -1.055901885483e+00, 2.607726671080e-04, 2.9050e-01, 1.8249e-03, + 2DIAGNOSTIC, 38, -1.056745891755e+00, 2.263394726523e-04, 2.9200e-01, 1.5020e-03, + 2DIAGNOSTIC, 39, -1.055702787520e+00, 1.893432485845e-04, 2.9355e-01, 1.5490e-03, + 2DIAGNOSTIC, 40, -1.056016840870e+00, 1.611453637764e-04, 2.9487e-01, 1.3201e-03, + 2DIAGNOSTIC, 41, -1.058816031188e+00, 1.428713469423e-04, 2.9621e-01, 1.3409e-03, + 2DIAGNOSTIC, 42, -1.065754645266e+00, 1.699443020501e-04, 2.9781e-01, 1.5972e-03, + 2DIAGNOSTIC, 43, -1.077933085766e+00, 2.737862805755e-04, 3.0023e-01, 2.4240e-03, + 2DIAGNOSTIC, 44, -1.081967164628e+00, 3.708449714814e-04, 3.0159e-01, 1.3611e-03, + 2DIAGNOSTIC, 45, -1.082883417238e+00, 4.444584986050e-04, 3.1570e-01, 1.4108e-02, + 2DIAGNOSTIC, 46, -1.084086499386e+00, 4.855637153510e-04, 3.1742e-01, 1.7180e-03, + 2DIAGNOSTIC, 47, -1.086660665710e+00, 5.072672000425e-04, 3.2590e-01, 8.4801e-03, + 2DIAGNOSTIC, 48, -1.087241175088e+00, 4.865071097784e-04, 3.3657e-01, 1.0667e-02, + 2DIAGNOSTIC, 49, -1.087623949722e+00, 4.167367200027e-04, 3.4362e-01, 7.0531e-03, + 2DIAGNOSTIC, 50, -1.087880985461e+00, 3.143202697308e-04, 3.4662e-01, 3.0041e-03, + 2DIAGNOSTIC, 51, -1.088294576278e+00, 2.032885296104e-04, 3.4933e-01, 2.7039e-03, + 2DIAGNOSTIC, 52, -1.090819896734e+00, 1.254210512019e-04, 3.5471e-01, 5.3842e-03, + 2DIAGNOSTIC, 53, -1.091956698876e+00, 1.066032756837e-04, 3.5843e-01, 3.7200e-03, + 2DIAGNOSTIC, 54, -1.092748689607e+00, 1.029309124020e-04, 3.6707e-01, 8.6420e-03, + 2DIAGNOSTIC, 55, -1.093370473413e+00, 9.737787489794e-05, 3.7053e-01, 3.4621e-03, + 2DIAGNOSTIC, 56, -1.094244012348e+00, 9.253916262571e-05, 3.7418e-01, 3.6452e-03, + 2DIAGNOSTIC, 57, -1.094441884259e+00, 9.202723731066e-05, 3.7788e-01, 3.7022e-03, + 2DIAGNOSTIC, 58, -1.094801629873e+00, 8.708601858926e-05, 3.8239e-01, 4.5040e-03, + 2DIAGNOSTIC, 59, -1.096008491373e+00, 8.146108879670e-05, 3.8754e-01, 5.1541e-03, + 2DIAGNOSTIC, 60, -1.096798251033e+00, 7.297503368019e-05, 3.9281e-01, 5.2741e-03, + 2DIAGNOSTIC, 61, -1.097167090367e+00, 6.101278247525e-05, 3.9714e-01, 4.3230e-03, + 2DIAGNOSTIC, 62, -1.098060744097e+00, 5.861094354107e-05, 4.0153e-01, 4.3890e-03, + 2DIAGNOSTIC, 63, -1.098671338460e+00, 5.814300123860e-05, 4.0581e-01, 4.2820e-03, + 2DIAGNOSTIC, 64, -1.098989257092e+00, 5.672604472534e-05, 4.0986e-01, 4.0488e-03, + 2DIAGNOSTIC, 65, -1.099436394135e+00, 5.430559028234e-05, 4.1430e-01, 4.4451e-03, + 2DIAGNOSTIC, 66, -1.100236778679e+00, 5.367982324903e-05, 4.2114e-01, 6.8371e-03, + 2DIAGNOSTIC, 67, -1.100479368587e+00, 4.967619976949e-05, 4.2569e-01, 4.5500e-03, + 2DIAGNOSTIC, 68, -1.100776968654e+00, 4.357839945149e-05, 4.3030e-01, 4.6101e-03, + 2DIAGNOSTIC, 69, -1.102339919085e+00, 4.434066070785e-05, 4.3628e-01, 5.9850e-03, + 2DIAGNOSTIC, 70, -1.103413343100e+00, 4.789221034774e-05, 4.3935e-01, 3.0680e-03, + 2DIAGNOSTIC, 71, -1.103205027875e+00, 4.724208855622e-05, 4.4162e-01, 2.2669e-03, + 2DIAGNOSTIC, 72, -1.102242868736e+00, 4.195780838904e-05, 4.4575e-01, 4.1320e-03, + 2DIAGNOSTIC, 73, -1.102254548081e+00, 3.526937334224e-05, 4.4778e-01, 2.0320e-03, + 2DIAGNOSTIC, 74, -1.102287396883e+00, 2.652171061254e-05, 4.4980e-01, 2.0130e-03, + 2DIAGNOSTIC, 75, -1.102340767317e+00, 1.710243712887e-05, 4.5183e-01, 2.0349e-03, + 2DIAGNOSTIC, 76, -1.102422337952e+00, 9.542831085162e-06, 4.5354e-01, 1.7121e-03, + 2DIAGNOSTIC, 77, -1.102539079627e+00, 2.716570435251e-06, 4.5540e-01, 1.8568e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.461604375466e-01, 1.797693134862e+308, 5.2905e-01, 7.3645e-02, + 2DIAGNOSTIC, 2, -7.461866811012e-01, 1.797693134862e+308, 5.4904e-01, 1.9992e-02, + 2DIAGNOSTIC, 3, -7.477731431315e-01, 1.797693134862e+308, 5.5297e-01, 3.9361e-03, + 2DIAGNOSTIC, 4, -7.501978351298e-01, 1.797693134862e+308, 5.5794e-01, 4.9670e-03, + 2DIAGNOSTIC, 5, -7.541386696437e-01, 1.797693134862e+308, 5.6223e-01, 4.2939e-03, + 2DIAGNOSTIC, 6, -7.595095906952e-01, 1.797693134862e+308, 5.6431e-01, 2.0800e-03, + 2DIAGNOSTIC, 7, -7.653972582174e-01, 1.797693134862e+308, 5.6643e-01, 2.1200e-03, + 2DIAGNOSTIC, 8, -7.718621366334e-01, 1.797693134862e+308, 5.6863e-01, 2.1961e-03, + 2DIAGNOSTIC, 9, -7.776184524130e-01, 1.797693134862e+308, 5.7137e-01, 2.7411e-03, + 2DIAGNOSTIC, 10, -7.871507399272e-01, 3.491172420664e-03, 5.7462e-01, 3.2511e-03, + 2DIAGNOSTIC, 11, -7.884834791552e-01, 3.564500744947e-03, 5.7707e-01, 2.4440e-03, + 2DIAGNOSTIC, 12, -7.929335935548e-01, 3.445954712008e-03, 5.7953e-01, 2.4619e-03, + 2DIAGNOSTIC, 13, -7.978018323473e-01, 3.217211836909e-03, 5.8339e-01, 3.8581e-03, + 2DIAGNOSTIC, 14, -8.016597066498e-01, 2.891117684101e-03, 5.8979e-01, 6.4030e-03, + 2DIAGNOSTIC, 15, -8.023769625137e-01, 2.457673096064e-03, 5.9883e-01, 9.0370e-03, + 2DIAGNOSTIC, 16, -8.028087073880e-01, 1.989509633349e-03, 6.1015e-01, 1.1325e-02, + 2DIAGNOSTIC, 17, -8.029443799109e-01, 1.525468537288e-03, 6.1956e-01, 9.4130e-03, + 2DIAGNOSTIC, 18, -8.031884040272e-01, 1.107768802685e-03, 6.2590e-01, 6.3400e-03, + 2DIAGNOSTIC, 19, -8.037732564777e-01, 7.496568056186e-04, 6.4641e-01, 2.0505e-02, + 2DIAGNOSTIC, 20, -8.038688337891e-01, 5.353838947478e-04, 6.5465e-01, 8.2428e-03, + 2DIAGNOSTIC, 21, -8.043575700704e-01, 3.238486263650e-04, 6.6314e-01, 8.4889e-03, + 2DIAGNOSTIC, 22, -8.045771444798e-01, 1.776452048305e-04, 6.7007e-01, 6.9280e-03, + 2DIAGNOSTIC, 23, -8.046273543555e-01, 1.040252955425e-04, 6.8934e-01, 1.9270e-02, + 2DIAGNOSTIC, 24, -8.046582709674e-01, 8.557742173846e-05, 6.9807e-01, 8.7290e-03, + 2DIAGNOSTIC, 25, -8.047052900210e-01, 7.167589670989e-05, 7.1192e-01, 1.3850e-02, + 2DIAGNOSTIC, 26, -8.047526632533e-01, 5.890707063954e-05, 7.2173e-01, 9.8090e-03, + 2DIAGNOSTIC, 27, -8.049653903719e-01, 4.628291360406e-05, 7.3598e-01, 1.4255e-02, + 2DIAGNOSTIC, 28, -8.051253578692e-01, 3.535801257704e-05, 7.5111e-01, 1.5125e-02, + 2DIAGNOSTIC, 29, -8.072662556265e-01, 5.593190650054e-05, 7.5919e-01, 8.0791e-03, + 2DIAGNOSTIC, 30, -8.089418378845e-01, 9.038301606443e-05, 7.7617e-01, 1.6985e-02, + 2DIAGNOSTIC, 31, -8.098995570401e-01, 1.305979575828e-04, 7.8998e-01, 1.3808e-02, + 2DIAGNOSTIC, 32, -8.134059422058e-01, 1.980897904681e-04, 7.9551e-01, 5.5280e-03, + 2DIAGNOSTIC, 33, -8.153706481920e-01, 2.638318561609e-04, 8.1982e-01, 2.4317e-02, + 2DIAGNOSTIC, 34, -8.158180588587e-01, 3.052970597246e-04, 8.2777e-01, 7.9501e-03, + 2DIAGNOSTIC, 35, -8.164385980262e-01, 3.225912230892e-04, 8.3417e-01, 6.3968e-03, + 2DIAGNOSTIC, 36, -8.166888527681e-01, 3.114402860845e-04, 8.4423e-01, 1.0063e-02, + 2DIAGNOSTIC, 37, -8.167641540307e-01, 2.740316136814e-04, 8.5250e-01, 8.2688e-03, + 2DIAGNOSTIC, 38, -8.172274240326e-01, 2.179286299533e-04, 8.7257e-01, 2.0067e-02, + 2DIAGNOSTIC, 39, -8.172084222547e-01, 1.635212038175e-04, 8.8436e-01, 1.1792e-02, + 2DIAGNOSTIC, 40, -8.173383793543e-01, 1.129002948250e-04, 8.9761e-01, 1.3247e-02, + 2DIAGNOSTIC, 41, -8.174351336276e-01, 6.267555343450e-05, 9.1823e-01, 2.0616e-02, + 2DIAGNOSTIC, 42, -8.174686552239e-01, 3.868360131102e-05, 9.2965e-01, 1.1427e-02, + 2DIAGNOSTIC, 43, -8.174875909590e-01, 2.861081671829e-05, 9.3645e-01, 6.7990e-03, + 2DIAGNOSTIC, 44, -8.174786742897e-01, 1.978494096502e-05, 9.4868e-01, 1.2234e-02, + 2DIAGNOSTIC, 45, -8.174538206487e-01, 1.425474536884e-05, 9.5957e-01, 1.0885e-02, + 2DIAGNOSTIC, 46, -8.175168979635e-01, 1.011561908570e-05, 9.7384e-01, 1.4267e-02, + 2DIAGNOSTIC, 47, -8.175692365755e-01, 6.112106123671e-06, 9.8477e-01, 1.0932e-02, + 2DIAGNOSTIC, 48, -8.176390041724e-01, 5.725977882530e-06, 1.0124e+00, 2.7656e-02, + 2DIAGNOSTIC, 49, -8.176390009674e-01, 4.718826046010e-06, 1.0159e+00, 3.4320e-03, + 2DIAGNOSTIC, 50, -8.176390080218e-01, 4.286874034351e-06, 1.0327e+00, 1.6839e-02, + 2DIAGNOSTIC, 51, -8.176390199482e-01, 4.191240047746e-06, 1.0424e+00, 9.6979e-03, + 2DIAGNOSTIC, 52, -8.176390401061e-01, 3.970922540519e-06, 1.0465e+00, 4.1139e-03, + 2DIAGNOSTIC, 53, -8.176390741660e-01, 3.562518639449e-06, 1.0502e+00, 3.7251e-03, + 2DIAGNOSTIC, 54, -8.176391316837e-01, 2.841836557702e-06, 1.0567e+00, 6.4991e-03, + 2DIAGNOSTIC, 55, -8.176392287258e-01, 1.772900196151e-06, 1.0662e+00, 9.4950e-03, + 2DIAGNOSTIC, 56, -8.176393921971e-01, 1.025445421056e-06, 1.0770e+00, 1.0767e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.947514159820e-01, 1.797693134862e+308, 1.1916e+00, 1.1465e-01, + 2DIAGNOSTIC, 2, -5.954369177760e-01, 1.797693134862e+308, 1.2494e+00, 5.7736e-02, + 2DIAGNOSTIC, 3, -5.963731095786e-01, 1.797693134862e+308, 1.3036e+00, 5.4206e-02, + 2DIAGNOSTIC, 4, -5.976064261303e-01, 1.797693134862e+308, 1.3190e+00, 1.5440e-02, + 2DIAGNOSTIC, 5, -5.988698583234e-01, 1.797693134862e+308, 1.3439e+00, 2.4838e-02, + 2DIAGNOSTIC, 6, -5.998363455278e-01, 1.797693134862e+308, 1.3972e+00, 5.3309e-02, + 2DIAGNOSTIC, 7, -6.015729620416e-01, 1.797693134862e+308, 1.4519e+00, 5.4709e-02, + 2DIAGNOSTIC, 8, -6.017947369532e-01, 1.797693134862e+308, 1.4852e+00, 3.3277e-02, + 2DIAGNOSTIC, 9, -6.019754330754e-01, 1.797693134862e+308, 1.5302e+00, 4.5086e-02, + 2DIAGNOSTIC, 10, -6.021171232088e-01, 8.996894980326e-04, 1.5701e+00, 3.9845e-02, + 2DIAGNOSTIC, 11, -6.022155121730e-01, 7.149395076491e-04, 1.5992e+00, 2.9087e-02, + 2DIAGNOSTIC, 12, -6.023204183916e-01, 5.275943717547e-04, 1.6258e+00, 2.6585e-02, + 2DIAGNOSTIC, 13, -6.024616878055e-01, 3.605400693920e-04, 1.6653e+00, 3.9499e-02, + 2DIAGNOSTIC, 14, -6.026512363897e-01, 2.330107087670e-04, 1.7398e+00, 7.4581e-02, + 2DIAGNOSTIC, 15, -6.027341955859e-01, 1.437292831560e-04, 1.7719e+00, 3.2082e-02, + 2DIAGNOSTIC, 16, -6.027556684409e-01, 8.058455057572e-05, 1.8020e+00, 3.0037e-02, + 2DIAGNOSTIC, 17, -6.027898780689e-01, 6.693558243169e-05, 1.8284e+00, 2.6415e-02, + 2DIAGNOSTIC, 18, -6.028244188759e-01, 5.541362243115e-05, 1.8549e+00, 2.6575e-02, + 2DIAGNOSTIC, 19, -6.028349610513e-01, 4.476560520449e-05, 1.8896e+00, 3.4658e-02, + 2DIAGNOSTIC, 20, -6.028296024447e-01, 3.438905584117e-05, 1.9400e+00, 5.0433e-02, + 2DIAGNOSTIC, 21, -6.028441704112e-01, 2.453445519401e-05, 1.9783e+00, 3.8211e-02, + 2DIAGNOSTIC, 22, -6.028564234275e-01, 1.591567888579e-05, 2.0125e+00, 3.4221e-02, + 2DIAGNOSTIC, 23, -6.028625756427e-01, 9.621070267272e-06, 2.0499e+00, 3.7432e-02, + 2DIAGNOSTIC, 24, -6.028671180129e-01, 6.871662380552e-06, 2.0914e+00, 4.1487e-02, + 2DIAGNOSTIC, 25, -6.028697289411e-01, 5.449828372930e-06, 2.1350e+00, 4.3642e-02, + 2DIAGNOSTIC, 26, -6.028713772325e-01, 4.154816325493e-06, 2.1708e+00, 3.5773e-02, + 2DIAGNOSTIC, 27, -6.028679791165e-01, 3.198911781639e-06, 2.2284e+00, 5.7577e-02, + 2DIAGNOSTIC, 28, -6.028684428351e-01, 2.709623146545e-06, 2.2697e+00, 4.1332e-02, + 2DIAGNOSTIC, 29, -6.028686753157e-01, 2.287774259091e-06, 2.2939e+00, 2.4219e-02, + 2DIAGNOSTIC, 30, -6.028702443428e-01, 1.717450609895e-06, 2.3249e+00, 3.0951e-02, + 2DIAGNOSTIC, 31, -6.028754027811e-01, 1.418668227601e-06, 2.3673e+00, 4.2383e-02, + 2DIAGNOSTIC, 32, -6.028764533894e-01, 1.295740648506e-06, 2.3974e+00, 3.0122e-02, + 2DIAGNOSTIC, 33, -6.028790233200e-01, 1.276575794983e-06, 2.4244e+00, 2.7001e-02, + 2DIAGNOSTIC, 34, -6.028896199961e-01, 1.437998832156e-06, 2.4518e+00, 2.7377e-02, + 2DIAGNOSTIC, 35, -6.028963623718e-01, 1.663682659588e-06, 2.4822e+00, 3.0445e-02, + 2DIAGNOSTIC, 36, -6.029152401817e-01, 2.074306443865e-06, 2.5222e+00, 3.9982e-02, + 2DIAGNOSTIC, 37, -6.029435515265e-01, 2.663471819049e-06, 2.5521e+00, 2.9905e-02, + 2DIAGNOSTIC, 38, -6.030672528306e-01, 4.587215458488e-06, 2.6147e+00, 6.2608e-02, + 2DIAGNOSTIC, 39, -6.030709749085e-01, 6.065596701146e-06, 2.6554e+00, 4.0678e-02, + 2DIAGNOSTIC, 40, -6.030707457253e-01, 7.003243437980e-06, 2.6918e+00, 3.6435e-02, + 2DIAGNOSTIC, 41, -6.030753994285e-01, 7.436439501025e-06, 2.7500e+00, 5.8144e-02, + 2DIAGNOSTIC, 42, -6.030801509702e-01, 7.267963588346e-06, 2.8055e+00, 5.5494e-02, + 2DIAGNOSTIC, 43, -6.030890561656e-01, 6.587262048482e-06, 2.8453e+00, 3.9842e-02, + 2DIAGNOSTIC, 44, -6.031015691176e-01, 5.625061855412e-06, 2.8715e+00, 2.6214e-02, + 2DIAGNOSTIC, 45, -6.031165758502e-01, 4.482133105672e-06, 2.9253e+00, 5.3773e-02, + 2DIAGNOSTIC, 46, -6.031500799698e-01, 3.570687249536e-06, 2.9898e+00, 6.4493e-02, + 2DIAGNOSTIC, 47, -6.031487621371e-01, 2.651417864361e-06, 3.0174e+00, 2.7598e-02, + 2DIAGNOSTIC, 48, -6.031528301505e-01, 2.842342459525e-06, 3.0708e+00, 5.3444e-02, + 2DIAGNOSTIC, 49, -6.031625467291e-01, 2.948620939421e-06, 3.1610e+00, 9.0169e-02, + 2DIAGNOSTIC, 50, -6.031610638592e-01, 2.808437884496e-06, 3.2874e+00, 1.2645e-01, + 2DIAGNOSTIC, 51, -6.031610638588e-01, 2.506636251960e-06, 3.3595e+00, 7.2097e-02, + 2DIAGNOSTIC, 52, -6.031610638588e-01, 2.080528064646e-06, 3.3891e+00, 2.9571e-02, + 2DIAGNOSTIC, 53, -6.031610638588e-01, 1.611142571724e-06, 3.4040e+00, 1.4849e-02, + 2DIAGNOSTIC, 54, -6.031610638588e-01, 1.169636874181e-06, 3.4200e+00, 1.6065e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.923241702417e-01, 1.797693134862e+308, 3.7844e+00, 3.6441e-01, + Elapsed time (stage 1): 3.8616e+00 + + +Total elapsed time: 7.2382e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:01:02 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 37 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 102 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 83.10% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 83.10% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[20223 10324 39860 12228 31825 1236 12751 4301 2999 1521 1236 673 + 8180 1578 2030 433 446 2434 696 1191 0 0 0 234 + 0 485 0 371 0 0 213 0 0 0 0 0 + 0] +[114683 164316 33061 35937 19171 25026 21059 20713 20348 24718 + 23756 17829 17034 12836 11364 10029 8777 8041 7084 5271 + 2051 1540 2722 1498 1500 1596 1469 1000 3223 1186 + 625 1424 3895 1491 796 727 1160] +[ 0 15759 21416 848 13636 0 0 7810 4976 0 24673 0 + 0 0 0 469 205 6287 2332 207 908 0 0 0 + 24441 509 0 0 9186 0 0 0 0 596 14937 5419 + 0] +[ 2773 120721 151668 25038 3925 4280 4936 674 792 1444 + 1386 1067 1127 508 6928 5081 2944 1494 33721 14228 + 14148 9788 5608 1996 4939 7646 2148 2572 1282 2917 + 2449 7807 2886 19674 745 1128 4289] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:20:32 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:20:37 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:28:32 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:28:32 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:28:32 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:28:55 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:29:04 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC001 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:30:07 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:30:32 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:33:41 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:33:42 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:35:17 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:35:18 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x563188727d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.8116, 122.979, -126.09] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56318859e730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fa879868010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x56318872b020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [109.153, 59.7173, -109.454] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5631887310c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fa8761a9010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x563188741840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.8116, 122.979, -126.09] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56318872d890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fa8714d5010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5631887453e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [109.153, 59.7173, -109.454] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x563188734130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fa86de16010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.208520620024e-01, 1.797693134862e+308, 2.4684e-01, 2.4684e-01, + 2DIAGNOSTIC, 2, -5.236537413346e-01, 1.797693134862e+308, 2.4817e-01, 1.3368e-03, + 2DIAGNOSTIC, 3, -5.283279548449e-01, 1.797693134862e+308, 2.4967e-01, 1.4980e-03, + 2DIAGNOSTIC, 4, -5.322137495879e-01, 1.797693134862e+308, 2.5093e-01, 1.2610e-03, + 2DIAGNOSTIC, 5, -5.375510002376e-01, 1.797693134862e+308, 2.5225e-01, 1.3158e-03, + 2DIAGNOSTIC, 6, -5.598077844422e-01, 1.797693134862e+308, 2.5361e-01, 1.3602e-03, + 2DIAGNOSTIC, 7, -5.908947912557e-01, 1.797693134862e+308, 2.5490e-01, 1.2960e-03, + 2DIAGNOSTIC, 8, -6.144093803999e-01, 1.797693134862e+308, 2.5646e-01, 1.5569e-03, + 2DIAGNOSTIC, 9, -6.479551303579e-01, 1.797693134862e+308, 2.5842e-01, 1.9569e-03, + 2DIAGNOSTIC, 10, -6.496736149483e-01, 1.638831538343e-02, 2.6013e-01, 1.7109e-03, + 2DIAGNOSTIC, 11, -6.497428856690e-01, 1.585146493679e-02, 2.6182e-01, 1.6911e-03, + 2DIAGNOSTIC, 12, -6.477395884824e-01, 1.403888560455e-02, 2.6328e-01, 1.4551e-03, + 2DIAGNOSTIC, 13, -6.476014726909e-01, 1.143642751849e-02, 2.6531e-01, 2.0308e-03, + 2DIAGNOSTIC, 14, -6.483622432069e-01, 8.365481330829e-03, 2.6724e-01, 1.9350e-03, + 2DIAGNOSTIC, 15, -6.480236330621e-01, 5.136938539350e-03, 2.6875e-01, 1.5070e-03, + 2DIAGNOSTIC, 16, -6.453024582183e-01, 2.454228753972e-03, 2.7017e-01, 1.4212e-03, + 2DIAGNOSTIC, 17, -6.464995684969e-01, 7.777879597111e-04, 2.7179e-01, 1.6239e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.986142807321e-01, 1.797693134862e+308, 5.2250e-01, 2.5071e-01, + 2DIAGNOSTIC, 2, -4.992765745854e-01, 1.797693134862e+308, 5.2555e-01, 3.0479e-03, + 2DIAGNOSTIC, 3, -5.017985097811e-01, 1.797693134862e+308, 5.2853e-01, 2.9771e-03, + 2DIAGNOSTIC, 4, -5.053087746563e-01, 1.797693134862e+308, 5.3140e-01, 2.8780e-03, + 2DIAGNOSTIC, 5, -5.069208020946e-01, 1.797693134862e+308, 5.3384e-01, 2.4409e-03, + 2DIAGNOSTIC, 6, -5.079398198183e-01, 1.797693134862e+308, 5.3607e-01, 2.2261e-03, + 2DIAGNOSTIC, 7, -5.090517074467e-01, 1.797693134862e+308, 5.3853e-01, 2.4631e-03, + 2DIAGNOSTIC, 8, -5.105410262737e-01, 1.797693134862e+308, 5.4127e-01, 2.7390e-03, + 2DIAGNOSTIC, 9, -5.107430595664e-01, 1.797693134862e+308, 5.4426e-01, 2.9860e-03, + 2DIAGNOSTIC, 10, -5.108618821567e-01, 1.705787931449e-03, 5.4692e-01, 2.6588e-03, + 2DIAGNOSTIC, 11, -5.102805770983e-01, 1.258376976420e-03, 5.4929e-01, 2.3739e-03, + 2DIAGNOSTIC, 12, -5.117792083704e-01, 8.738211390931e-04, 5.5200e-01, 2.7108e-03, + 2DIAGNOSTIC, 13, -5.124650041210e-01, 6.023809154422e-04, 5.5466e-01, 2.6579e-03, + 2DIAGNOSTIC, 14, -5.126356067648e-01, 4.613445981388e-04, 5.5708e-01, 2.4199e-03, + 2DIAGNOSTIC, 15, -5.131346130087e-01, 3.774353135248e-04, 5.5941e-01, 2.3341e-03, + 2DIAGNOSTIC, 16, -5.136932536663e-01, 3.245386689883e-04, 5.6177e-01, 2.3551e-03, + 2DIAGNOSTIC, 17, -5.176554275523e-01, 4.124580333262e-04, 5.6505e-01, 3.2802e-03, + 2DIAGNOSTIC, 18, -5.197203241960e-01, 5.585508185305e-04, 5.6741e-01, 2.3589e-03, + 2DIAGNOSTIC, 19, -5.244729120196e-01, 7.824663114311e-04, 5.7086e-01, 3.4509e-03, + 2DIAGNOSTIC, 20, -5.259926031585e-01, 9.560421584334e-04, 5.7343e-01, 2.5661e-03, + 2DIAGNOSTIC, 21, -5.260987744787e-01, 1.010985748356e-03, 5.7597e-01, 2.5489e-03, + 2DIAGNOSTIC, 22, -5.263515414683e-01, 1.010960946402e-03, 5.7822e-01, 2.2480e-03, + 2DIAGNOSTIC, 23, -5.276380102860e-01, 9.630610755876e-04, 5.8081e-01, 2.5871e-03, + 2DIAGNOSTIC, 24, -5.282605863849e-01, 8.458800233200e-04, 5.8306e-01, 2.2531e-03, + 2DIAGNOSTIC, 25, -5.305807768424e-01, 7.218041803084e-04, 5.8534e-01, 2.2740e-03, + 2DIAGNOSTIC, 26, -5.367444164503e-01, 6.809943930915e-04, 5.8889e-01, 3.5510e-03, + 2DIAGNOSTIC, 27, -5.376858751034e-01, 6.768188860769e-04, 5.9241e-01, 3.5231e-03, + 2DIAGNOSTIC, 28, -5.379307444107e-01, 6.535661988530e-04, 5.9498e-01, 2.5730e-03, + 2DIAGNOSTIC, 29, -5.381835956664e-01, 6.660104037188e-04, 5.9721e-01, 2.2259e-03, + 2DIAGNOSTIC, 30, -5.384750022779e-01, 6.473011070599e-04, 5.9945e-01, 2.2380e-03, + 2DIAGNOSTIC, 31, -5.387462755561e-01, 5.736584026294e-04, 6.0189e-01, 2.4440e-03, + 2DIAGNOSTIC, 32, -5.389239472523e-01, 4.574049154844e-04, 6.0407e-01, 2.1808e-03, + 2DIAGNOSTIC, 33, -5.391032661608e-01, 3.312119708133e-04, 6.0653e-01, 2.4569e-03, + 2DIAGNOSTIC, 34, -5.394171677824e-01, 1.967079334250e-04, 6.0873e-01, 2.2030e-03, + 2DIAGNOSTIC, 35, -5.399218795481e-01, 9.289182118430e-05, 6.1099e-01, 2.2609e-03, + 2DIAGNOSTIC, 36, -5.406366268346e-01, 8.984625758328e-05, 6.1329e-01, 2.2962e-03, + 2DIAGNOSTIC, 37, -5.416408225053e-01, 1.069255681635e-04, 6.1594e-01, 2.6481e-03, + 2DIAGNOSTIC, 38, -5.420055846380e-01, 1.214717686271e-04, 6.1989e-01, 3.9511e-03, + 2DIAGNOSTIC, 39, -5.423689607012e-01, 1.323841001900e-04, 6.2210e-01, 2.2099e-03, + 2DIAGNOSTIC, 40, -5.424177984933e-01, 1.347479999574e-04, 6.2432e-01, 2.2230e-03, + 2DIAGNOSTIC, 41, -5.425519819155e-01, 1.294949325616e-04, 6.2684e-01, 2.5179e-03, + 2DIAGNOSTIC, 42, -5.426073702753e-01, 1.150795206008e-04, 6.2941e-01, 2.5730e-03, + 2DIAGNOSTIC, 43, -5.426994073030e-01, 9.383824109322e-05, 6.3196e-01, 2.5489e-03, + 2DIAGNOSTIC, 44, -5.434233380106e-01, 7.749255718202e-05, 6.3507e-01, 3.1121e-03, + 2DIAGNOSTIC, 45, -5.434592307874e-01, 6.076757578651e-05, 6.3723e-01, 2.1610e-03, + 2DIAGNOSTIC, 46, -5.435625749290e-01, 4.851438288035e-05, 6.3971e-01, 2.4710e-03, + 2DIAGNOSTIC, 47, -5.436043026756e-01, 4.425828642515e-05, 6.4186e-01, 2.1582e-03, + 2DIAGNOSTIC, 48, -5.434111643850e-01, 3.781487606626e-05, 6.4461e-01, 2.7509e-03, + 2DIAGNOSTIC, 49, -5.434266853296e-01, 3.221096561610e-05, 6.4706e-01, 2.4462e-03, + 2DIAGNOSTIC, 50, -5.434381920574e-01, 2.438539270681e-05, 6.4949e-01, 2.4312e-03, + 2DIAGNOSTIC, 51, -5.434487918964e-01, 1.619254419921e-05, 6.5163e-01, 2.1379e-03, + 2DIAGNOSTIC, 52, -5.433527606447e-01, 6.478631553439e-06, 6.5409e-01, 2.4619e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.121448280580e-01, 1.797693134862e+308, 9.1353e-01, 2.5944e-01, + 2DIAGNOSTIC, 2, -4.131220850948e-01, 1.797693134862e+308, 9.2722e-01, 1.3682e-02, + 2DIAGNOSTIC, 3, -4.145517746581e-01, 1.797693134862e+308, 9.4053e-01, 1.3312e-02, + 2DIAGNOSTIC, 4, -4.153852252569e-01, 1.797693134862e+308, 9.5327e-01, 1.2741e-02, + 2DIAGNOSTIC, 5, -4.163820360928e-01, 1.797693134862e+308, 9.6809e-01, 1.4818e-02, + 2DIAGNOSTIC, 6, -4.172615683312e-01, 1.797693134862e+308, 9.8086e-01, 1.2769e-02, + 2DIAGNOSTIC, 7, -4.181145363830e-01, 1.797693134862e+308, 9.9372e-01, 1.2866e-02, + 2DIAGNOSTIC, 8, -4.192735313326e-01, 1.797693134862e+308, 1.0087e+00, 1.5023e-02, + 2DIAGNOSTIC, 9, -4.211795045039e-01, 1.797693134862e+308, 1.0248e+00, 1.6035e-02, + 2DIAGNOSTIC, 10, -4.252684916655e-01, 1.698968726770e-03, 1.0371e+00, 1.2339e-02, + 2DIAGNOSTIC, 11, -4.270197749588e-01, 1.783562490579e-03, 1.0523e+00, 1.5151e-02, + 2DIAGNOSTIC, 12, -4.277046951890e-01, 1.787772423253e-03, 1.0656e+00, 1.3307e-02, + 2DIAGNOSTIC, 13, -4.294553138335e-01, 1.797636574768e-03, 1.0831e+00, 1.7524e-02, + 2DIAGNOSTIC, 14, -4.309062500189e-01, 1.749799683839e-03, 1.0982e+00, 1.5055e-02, + 2DIAGNOSTIC, 15, -4.361375772423e-01, 1.823873533951e-03, 1.1111e+00, 1.2991e-02, + 2DIAGNOSTIC, 16, -4.470133297040e-01, 2.206863633227e-03, 1.1262e+00, 1.5064e-02, + 2DIAGNOSTIC, 17, -4.587609727854e-01, 2.824063481995e-03, 1.1412e+00, 1.4995e-02, + 2DIAGNOSTIC, 18, -4.610525413816e-01, 3.229667192858e-03, 1.1541e+00, 1.2864e-02, + 2DIAGNOSTIC, 19, -4.653958867055e-01, 3.511619470492e-03, 1.1689e+00, 1.4790e-02, + 2DIAGNOSTIC, 20, -4.709972593486e-01, 3.753593967831e-03, 1.1816e+00, 1.2774e-02, + 2DIAGNOSTIC, 21, -4.776403826623e-01, 3.872769142728e-03, 1.1947e+00, 1.3081e-02, + 2DIAGNOSTIC, 22, -5.684871232024e-01, 6.268215869566e-03, 1.2178e+00, 2.3110e-02, + 2DIAGNOSTIC, 23, -5.885081637940e-01, 8.342060911676e-03, 1.2344e+00, 1.6580e-02, + 2DIAGNOSTIC, 24, -6.072422905547e-01, 9.949223987059e-03, 1.2501e+00, 1.5743e-02, + 2DIAGNOSTIC, 25, -6.236580555807e-01, 1.100782040156e-02, 1.2636e+00, 1.3444e-02, + 2DIAGNOSTIC, 26, -6.607372088599e-01, 1.200955382631e-02, 1.2813e+00, 1.7719e-02, + 2DIAGNOSTIC, 27, -6.893581078099e-01, 1.261430364574e-02, 1.2971e+00, 1.5756e-02, + 2DIAGNOSTIC, 28, -7.031248969564e-01, 1.229446062411e-02, 1.3124e+00, 1.5366e-02, + 2DIAGNOSTIC, 29, -7.199982761569e-01, 1.130286713533e-02, 1.3283e+00, 1.5848e-02, + 2DIAGNOSTIC, 30, -7.410728420719e-01, 9.863213975651e-03, 1.3428e+00, 1.4517e-02, + 2DIAGNOSTIC, 31, -7.546865344559e-01, 7.943873976832e-03, 1.3566e+00, 1.3834e-02, + 2DIAGNOSTIC, 32, -7.561418987074e-01, 7.035665292120e-03, 1.3711e+00, 1.4473e-02, + 2DIAGNOSTIC, 33, -7.566377193621e-01, 5.891824184118e-03, 1.3860e+00, 1.4909e-02, + 2DIAGNOSTIC, 34, -7.575341514726e-01, 4.605159398773e-03, 1.4009e+00, 1.4845e-02, + 2DIAGNOSTIC, 35, -7.581204965013e-01, 3.232628863305e-03, 1.4177e+00, 1.6831e-02, + 2DIAGNOSTIC, 36, -7.584942607374e-01, 2.197166403059e-03, 1.4322e+00, 1.4486e-02, + 2DIAGNOSTIC, 37, -7.586470095633e-01, 1.436177796838e-03, 1.4447e+00, 1.2516e-02, + 2DIAGNOSTIC, 38, -7.589433758884e-01, 7.842072826995e-04, 1.4571e+00, 1.2425e-02, + 2DIAGNOSTIC, 39, -7.592034735142e-01, 3.210781469010e-04, 1.4735e+00, 1.6375e-02, + 2DIAGNOSTIC, 40, -7.593463529804e-01, 1.210527295438e-04, 1.4954e+00, 2.1940e-02, + 2DIAGNOSTIC, 41, -7.593550408807e-01, 8.821561367250e-05, 1.5100e+00, 1.4529e-02, + 2DIAGNOSTIC, 42, -7.593929914175e-01, 6.687629635487e-05, 1.5251e+00, 1.5101e-02, + 2DIAGNOSTIC, 43, -7.594276006522e-01, 4.645428766563e-05, 1.5380e+00, 1.2948e-02, + 2DIAGNOSTIC, 44, -7.594144978827e-01, 3.254377587814e-05, 1.5523e+00, 1.4316e-02, + 2DIAGNOSTIC, 45, -7.594493271190e-01, 2.305868026085e-05, 1.5647e+00, 1.2368e-02, + 2DIAGNOSTIC, 46, -7.594421008642e-01, 1.585844855365e-05, 1.5789e+00, 1.4256e-02, + 2DIAGNOSTIC, 47, -7.594114834893e-01, 8.835151597584e-06, 1.5918e+00, 1.2868e-02, + 2DIAGNOSTIC, 48, -7.594352303553e-01, 4.550863184249e-06, 1.6065e+00, 1.4658e-02, + 2DIAGNOSTIC, 49, -7.594917131311e-01, 3.148519611296e-06, 1.6208e+00, 1.4351e-02, + 2DIAGNOSTIC, 50, -7.594800059397e-01, 2.815407670598e-06, 1.6343e+00, 1.3435e-02, + 2DIAGNOSTIC, 51, -7.594761198054e-01, 2.356240541641e-06, 1.6465e+00, 1.2221e-02, + 2DIAGNOSTIC, 52, -7.594833040921e-01, 2.180192166291e-06, 1.6612e+00, 1.4701e-02, + 2DIAGNOSTIC, 53, -7.595244155019e-01, 2.537639349334e-06, 1.6737e+00, 1.2475e-02, + 2DIAGNOSTIC, 54, -7.596136901336e-01, 3.327074754516e-06, 1.6860e+00, 1.2326e-02, + 2DIAGNOSTIC, 55, -7.597325352301e-01, 5.103658322632e-06, 1.7001e+00, 1.4109e-02, + 2DIAGNOSTIC, 56, -7.601813307238e-01, 9.999068524620e-06, 1.7143e+00, 1.4157e-02, + 2DIAGNOSTIC, 57, -7.601469408383e-01, 1.319056824624e-05, 1.7339e+00, 1.9668e-02, + 2DIAGNOSTIC, 58, -7.602652253115e-01, 1.620620457529e-05, 1.7462e+00, 1.2277e-02, + 2DIAGNOSTIC, 59, -7.602574675464e-01, 1.799725417231e-05, 1.7603e+00, 1.4142e-02, + 2DIAGNOSTIC, 60, -7.602959320811e-01, 1.823949766817e-05, 1.7727e+00, 1.2316e-02, + 2DIAGNOSTIC, 61, -7.602666830063e-01, 1.650045589515e-05, 1.7868e+00, 1.4196e-02, + 2DIAGNOSTIC, 62, -7.602965347169e-01, 1.358447840026e-05, 1.7991e+00, 1.2262e-02, + 2DIAGNOSTIC, 63, -7.604395764283e-01, 1.086794671486e-05, 1.8137e+00, 1.4592e-02, + 2DIAGNOSTIC, 64, -7.606244979009e-01, 9.153919149487e-06, 1.8342e+00, 2.0537e-02, + 2DIAGNOSTIC, 65, -7.606126718452e-01, 7.309845970221e-06, 1.8466e+00, 1.2372e-02, + 2DIAGNOSTIC, 66, -7.606160924573e-01, 7.971019267392e-06, 1.8614e+00, 1.4789e-02, + 2DIAGNOSTIC, 67, -7.606219127194e-01, 7.702737149739e-06, 1.8756e+00, 1.4231e-02, + 2DIAGNOSTIC, 68, -7.606313847684e-01, 7.563570974711e-06, 1.8879e+00, 1.2294e-02, + 2DIAGNOSTIC, 69, -7.605497915129e-01, 6.155805878667e-06, 1.9004e+00, 1.2513e-02, + 2DIAGNOSTIC, 70, -7.606234143792e-01, 4.992097884435e-06, 1.9196e+00, 1.9172e-02, + 2DIAGNOSTIC, 71, -7.606286792627e-01, 3.295705013017e-06, 1.9342e+00, 1.4559e-02, + 2DIAGNOSTIC, 72, -7.606301074372e-01, 1.560177882887e-06, 1.9487e+00, 1.4562e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.346567624654e-01, 1.797693134862e+308, 2.3740e+00, 4.2523e-01, + 2DIAGNOSTIC, 2, -6.349722809486e-01, 1.797693134862e+308, 2.4629e+00, 8.8897e-02, + 2DIAGNOSTIC, 3, -6.351679473225e-01, 1.797693134862e+308, 2.5516e+00, 8.8698e-02, + 2DIAGNOSTIC, 4, -6.352812071453e-01, 1.797693134862e+308, 2.6391e+00, 8.7553e-02, + 2DIAGNOSTIC, 5, -6.354935760193e-01, 1.797693134862e+308, 2.7801e+00, 1.4098e-01, + 2DIAGNOSTIC, 6, -6.355972212807e-01, 1.797693134862e+308, 2.8671e+00, 8.7009e-02, + 2DIAGNOSTIC, 7, -6.356293203322e-01, 1.797693134862e+308, 2.9502e+00, 8.3086e-02, + 2DIAGNOSTIC, 8, -6.356876516345e-01, 1.797693134862e+308, 3.0495e+00, 9.9268e-02, + 2DIAGNOSTIC, 9, -6.357863203716e-01, 1.797693134862e+308, 3.1634e+00, 1.1390e-01, + 2DIAGNOSTIC, 10, -6.358133009147e-01, 1.110760664110e-04, 3.2506e+00, 8.7251e-02, + 2DIAGNOSTIC, 11, -6.358293436948e-01, 7.898426789264e-05, 3.3376e+00, 8.7030e-02, + 2DIAGNOSTIC, 12, -6.358592918187e-01, 5.827991020127e-05, 3.4651e+00, 1.2744e-01, + 2DIAGNOSTIC, 13, -6.358609701539e-01, 4.250507145190e-05, 3.5673e+00, 1.0219e-01, + 2DIAGNOSTIC, 14, -6.358588443409e-01, 2.871373521389e-05, 3.6813e+00, 1.1403e-01, + 2DIAGNOSTIC, 15, -6.358542672446e-01, 2.048491248362e-05, 3.8368e+00, 1.5551e-01, + 2DIAGNOSTIC, 16, -6.358542673850e-01, 1.452701302836e-05, 3.9545e+00, 1.1768e-01, + 2DIAGNOSTIC, 17, -6.358542674196e-01, 8.941879556870e-06, 4.0755e+00, 1.2100e-01, + 2DIAGNOSTIC, 18, -6.358542674244e-01, 4.712617389289e-06, 4.1717e+00, 9.6212e-02, + 2DIAGNOSTIC, 19, -6.358542674253e-01, 2.976808909920e-06, 4.3065e+00, 1.3477e-01, + 2DIAGNOSTIC, 20, -6.358542674255e-01, 1.897153922480e-06, 4.4808e+00, 1.7429e-01, + 2DIAGNOSTIC, 21, -6.358542674255e-01, 1.215190452139e-06, 4.6311e+00, 1.5035e-01, + 2DIAGNOSTIC, 22, -6.358542674256e-01, 1.228894936818e-06, 4.8140e+00, 1.8290e-01, + 2DIAGNOSTIC, 23, -6.358542674256e-01, 1.294492843147e-06, 4.9156e+00, 1.0156e-01, + 2DIAGNOSTIC, 24, -6.358542674256e-01, 1.325805547361e-06, 5.0321e+00, 1.1653e-01, + 2DIAGNOSTIC, 25, -6.358542674255e-01, 1.272755302671e-06, 5.1515e+00, 1.1936e-01, + 2DIAGNOSTIC, 26, -6.358542674255e-01, 1.223789268583e-06, 5.2571e+00, 1.0562e-01, + 2DIAGNOSTIC, 27, -6.358542674255e-01, 1.178451851866e-06, 5.3914e+00, 1.3429e-01, + 2DIAGNOSTIC, 28, -6.358542674255e-01, 1.136353707888e-06, 5.4923e+00, 1.0093e-01, + 2DIAGNOSTIC, 29, -6.358542674255e-01, 1.097159601809e-06, 5.6078e+00, 1.1549e-01, + 2DIAGNOSTIC, 30, -6.358542674256e-01, 1.060579051242e-06, 5.7479e+00, 1.4012e-01, + 2DIAGNOSTIC, 31, -6.358542674255e-01, 1.026359071107e-06, 5.8599e+00, 1.1198e-01, + Elapsed time (stage 0): 6.0170e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.977039665206e-01, 1.797693134862e+308, 2.0730e-01, 2.0730e-01, + 2DIAGNOSTIC, 2, -9.994751009871e-01, 1.797693134862e+308, 2.0861e-01, 1.3161e-03, + 2DIAGNOSTIC, 3, -9.991724294794e-01, 1.797693134862e+308, 2.0989e-01, 1.2729e-03, + 2DIAGNOSTIC, 4, -1.001952970212e+00, 1.797693134862e+308, 2.1112e-01, 1.2312e-03, + 2DIAGNOSTIC, 5, -1.003622467957e+00, 1.797693134862e+308, 2.1250e-01, 1.3809e-03, + 2DIAGNOSTIC, 6, -1.006826011991e+00, 1.797693134862e+308, 2.1408e-01, 1.5810e-03, + 2DIAGNOSTIC, 7, -1.009938582962e+00, 1.797693134862e+308, 2.1548e-01, 1.4000e-03, + 2DIAGNOSTIC, 8, -1.011681348807e+00, 1.797693134862e+308, 2.2072e-01, 5.2390e-03, + 2DIAGNOSTIC, 9, -1.011681343211e+00, 1.797693134862e+308, 2.2198e-01, 1.2650e-03, + 2DIAGNOSTIC, 10, -1.011681403991e+00, 1.068401046240e-03, 2.2356e-01, 1.5750e-03, + 2DIAGNOSTIC, 11, -1.011681506745e+00, 8.823629492515e-04, 2.2509e-01, 1.5299e-03, + 2DIAGNOSTIC, 12, -1.011681680425e+00, 6.903201771156e-04, 2.2664e-01, 1.5559e-03, + 2DIAGNOSTIC, 13, -1.011681973899e+00, 4.582825277150e-04, 2.2819e-01, 1.5471e-03, + 2DIAGNOSTIC, 14, -1.011682469544e+00, 2.749133792516e-04, 2.2968e-01, 1.4839e-03, + 2DIAGNOSTIC, 15, -1.011683305919e+00, 1.221392083244e-04, 2.3121e-01, 1.5330e-03, + 2DIAGNOSTIC, 16, -1.011684715228e+00, 3.282378251381e-05, 2.3267e-01, 1.4570e-03, + 2DIAGNOSTIC, 17, -1.011687087931e+00, 2.052513888476e-06, 2.3419e-01, 1.5271e-03, + 2DIAGNOSTIC, 18, -1.011691076838e+00, 2.052013688365e-06, 2.3570e-01, 1.5030e-03, + 2DIAGNOSTIC, 19, -1.011697711288e+00, 2.122999856177e-06, 2.3719e-01, 1.4968e-03, + 2DIAGNOSTIC, 20, -1.011708632601e+00, 2.298719229035e-06, 2.3873e-01, 1.5368e-03, + 2DIAGNOSTIC, 21, -1.011726293678e+00, 2.627845456765e-06, 2.4018e-01, 1.4479e-03, + 2DIAGNOSTIC, 22, -1.011754106571e+00, 3.177816423457e-06, 2.4171e-01, 1.5371e-03, + 2DIAGNOSTIC, 23, -1.011796128219e+00, 4.030454616014e-06, 2.4321e-01, 1.4939e-03, + 2DIAGNOSTIC, 24, -1.011859083846e+00, 5.300273750161e-06, 2.4476e-01, 1.5471e-03, + 2DIAGNOSTIC, 25, -1.011952420893e+00, 7.144176006113e-06, 2.4629e-01, 1.5299e-03, + 2DIAGNOSTIC, 26, -1.012083863099e+00, 9.715595038685e-06, 2.4781e-01, 1.5218e-03, + 2DIAGNOSTIC, 27, -1.013174286452e+00, 2.266857946914e-05, 2.4925e-01, 1.4381e-03, + 2DIAGNOSTIC, 28, -1.013432167711e+00, 3.500852294579e-05, 2.5102e-01, 1.7750e-03, + 2DIAGNOSTIC, 29, -1.013733816491e+00, 4.635255058868e-05, 2.5252e-01, 1.4980e-03, + 2DIAGNOSTIC, 30, -1.013564733591e+00, 5.127395359111e-05, 2.5427e-01, 1.7531e-03, + 2DIAGNOSTIC, 31, -1.013260708095e+00, 4.858663173658e-05, 2.5668e-01, 2.4071e-03, + 2DIAGNOSTIC, 32, -1.014439555830e+00, 5.210635072823e-05, 2.5818e-01, 1.4999e-03, + 2DIAGNOSTIC, 33, -1.014554868336e+00, 5.149452238468e-05, 2.5994e-01, 1.7600e-03, + 2DIAGNOSTIC, 34, -1.014652056056e+00, 4.758971402807e-05, 2.6163e-01, 1.6880e-03, + 2DIAGNOSTIC, 35, -1.014740956464e+00, 4.121647107376e-05, 2.6333e-01, 1.7080e-03, + 2DIAGNOSTIC, 36, -1.014832458231e+00, 3.294055023947e-05, 2.6506e-01, 1.7290e-03, + 2DIAGNOSTIC, 37, -1.013598869858e+00, 2.078169909123e-05, 2.6679e-01, 1.7231e-03, + 2DIAGNOSTIC, 38, -1.014109585043e+00, 1.316871843862e-05, 2.6826e-01, 1.4780e-03, + 2DIAGNOSTIC, 39, -1.014197732880e+00, 7.510657499901e-06, 2.6999e-01, 1.7259e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.825680961556e-01, 1.797693134862e+308, 4.9551e-01, 2.2552e-01, + 2DIAGNOSTIC, 2, -8.821176571149e-01, 1.797693134862e+308, 4.9756e-01, 2.0509e-03, + 2DIAGNOSTIC, 3, -8.851107451160e-01, 1.797693134862e+308, 4.9951e-01, 1.9519e-03, + 2DIAGNOSTIC, 4, -8.864457657552e-01, 1.797693134862e+308, 5.0136e-01, 1.8499e-03, + 2DIAGNOSTIC, 5, -8.875662189481e-01, 1.797693134862e+308, 5.0376e-01, 2.3930e-03, + 2DIAGNOSTIC, 6, -8.874463315857e-01, 1.797693134862e+308, 5.0588e-01, 2.1250e-03, + 2DIAGNOSTIC, 7, -8.879041716083e-01, 1.797693134862e+308, 5.0827e-01, 2.3930e-03, + 2DIAGNOSTIC, 8, -8.883904892467e-01, 1.797693134862e+308, 5.1060e-01, 2.3260e-03, + 2DIAGNOSTIC, 9, -8.884278317458e-01, 1.797693134862e+308, 5.1291e-01, 2.3050e-03, + 2DIAGNOSTIC, 10, -8.888598054354e-01, 4.766485809190e-04, 5.1566e-01, 2.7559e-03, + 2DIAGNOSTIC, 11, -8.891684149292e-01, 3.577350249909e-04, 5.1899e-01, 3.3309e-03, + 2DIAGNOSTIC, 12, -8.911222771840e-01, 2.652794499594e-04, 5.2794e-01, 8.9481e-03, + 2DIAGNOSTIC, 13, -8.911222319373e-01, 2.351228872110e-04, 5.3030e-01, 2.3601e-03, + 2DIAGNOSTIC, 14, -8.911222845010e-01, 2.186599623864e-04, 5.3263e-01, 2.3301e-03, + 2DIAGNOSTIC, 15, -8.911223733515e-01, 2.094195296573e-04, 5.3497e-01, 2.3420e-03, + 2DIAGNOSTIC, 16, -8.911225234990e-01, 1.795214349562e-04, 5.3729e-01, 2.3210e-03, + 2DIAGNOSTIC, 17, -8.911227771174e-01, 1.446702644942e-04, 5.3970e-01, 2.4080e-03, + 2DIAGNOSTIC, 18, -8.911232048834e-01, 1.091970010992e-04, 5.4209e-01, 2.3909e-03, + 2DIAGNOSTIC, 19, -8.911239259436e-01, 6.854654473986e-05, 5.4439e-01, 2.3000e-03, + 2DIAGNOSTIC, 20, -8.911251388394e-01, 3.292113743791e-05, 5.4671e-01, 2.3160e-03, + 2DIAGNOSTIC, 21, -8.911271716783e-01, 1.655971987063e-06, 5.4905e-01, 2.3410e-03, + 2DIAGNOSTIC, 22, -8.911305580964e-01, 1.671288012373e-06, 5.5143e-01, 2.3799e-03, + 2DIAGNOSTIC, 23, -8.911362055376e-01, 1.741528760160e-06, 5.5383e-01, 2.3999e-03, + 2DIAGNOSTIC, 24, -8.911454603408e-01, 1.895202837512e-06, 5.5626e-01, 2.4300e-03, + 2DIAGNOSTIC, 25, -8.911599628728e-01, 2.167753752141e-06, 5.5867e-01, 2.4149e-03, + 2DIAGNOSTIC, 26, -8.911816487220e-01, 2.600642979883e-06, 5.6150e-01, 2.8300e-03, + 2DIAGNOSTIC, 27, -8.912121462230e-01, 3.231575211385e-06, 5.6459e-01, 3.0870e-03, + 2DIAGNOSTIC, 28, -8.912286070471e-01, 3.811045963219e-06, 5.6722e-01, 2.6240e-03, + 2DIAGNOSTIC, 29, -8.910279254097e-01, 1.895678632596e-06, 5.6964e-01, 2.4250e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.739437066052e-01, 1.797693134862e+308, 8.0680e-01, 2.3716e-01, + 2DIAGNOSTIC, 2, -7.749039364890e-01, 1.797693134862e+308, 8.2070e-01, 1.3904e-02, + 2DIAGNOSTIC, 3, -7.756788466391e-01, 1.797693134862e+308, 8.3414e-01, 1.3438e-02, + 2DIAGNOSTIC, 4, -7.766080158754e-01, 1.797693134862e+308, 8.4743e-01, 1.3289e-02, + 2DIAGNOSTIC, 5, -7.776529349975e-01, 1.797693134862e+308, 8.6283e-01, 1.5397e-02, + 2DIAGNOSTIC, 6, -7.783026216156e-01, 1.797693134862e+308, 8.8659e-01, 2.3766e-02, + 2DIAGNOSTIC, 7, -7.782108046269e-01, 1.797693134862e+308, 9.0105e-01, 1.4455e-02, + 2DIAGNOSTIC, 8, -7.782641384315e-01, 1.797693134862e+308, 9.1621e-01, 1.5167e-02, + 2DIAGNOSTIC, 9, -7.782500122974e-01, 1.797693134862e+308, 9.3160e-01, 1.5390e-02, + 2DIAGNOSTIC, 10, -7.782429407956e-01, 3.650513050122e-04, 9.4720e-01, 1.5596e-02, + 2DIAGNOSTIC, 11, -7.782556651523e-01, 2.361178251568e-04, 9.6272e-01, 1.5521e-02, + 2DIAGNOSTIC, 12, -7.782398582709e-01, 1.367023097263e-04, 9.7584e-01, 1.3121e-02, + 2DIAGNOSTIC, 13, -7.782522759356e-01, 6.254518207140e-05, 9.9068e-01, 1.4836e-02, + 2DIAGNOSTIC, 14, -7.782403917525e-01, 1.686677274422e-05, 1.0036e+00, 1.2921e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.453131620917e-01, 1.797693134862e+308, 1.4401e+00, 4.3655e-01, + 2DIAGNOSTIC, 2, -6.462399390253e-01, 1.797693134862e+308, 1.5369e+00, 9.6780e-02, + 2DIAGNOSTIC, 3, -6.469156695182e-01, 1.797693134862e+308, 1.6262e+00, 8.9285e-02, + 2DIAGNOSTIC, 4, -6.471626981479e-01, 1.797693134862e+308, 1.7168e+00, 9.0601e-02, + 2DIAGNOSTIC, 5, -6.473282738848e-01, 1.797693134862e+308, 1.8246e+00, 1.0782e-01, + 2DIAGNOSTIC, 6, -6.474061394157e-01, 1.797693134862e+308, 2.0207e+00, 1.9610e-01, + 2DIAGNOSTIC, 7, -6.474236782633e-01, 1.797693134862e+308, 2.1286e+00, 1.0791e-01, + 2DIAGNOSTIC, 8, -6.474212934888e-01, 1.797693134862e+308, 2.2372e+00, 1.0857e-01, + 2DIAGNOSTIC, 9, -6.474297126422e-01, 1.797693134862e+308, 2.3591e+00, 1.2188e-01, + 2DIAGNOSTIC, 10, -6.474333294880e-01, 1.634813191207e-04, 2.4671e+00, 1.0801e-01, + 2DIAGNOSTIC, 11, -6.474336428006e-01, 7.795278380850e-05, 2.5742e+00, 1.0706e-01, + 2DIAGNOSTIC, 12, -6.474320955700e-01, 3.330569866314e-05, 2.6672e+00, 9.3055e-02, + 2DIAGNOSTIC, 13, -6.474325537491e-01, 1.548083897203e-05, 2.7748e+00, 1.0759e-01, + 2DIAGNOSTIC, 14, -6.474357285864e-01, 6.752907038110e-06, 2.8937e+00, 1.1890e-01, + 2DIAGNOSTIC, 15, -6.474351430496e-01, 3.544557664742e-06, 2.9826e+00, 8.8876e-02, + 2DIAGNOSTIC, 16, -6.474334234949e-01, 2.687485006758e-06, 3.0770e+00, 9.4472e-02, + 2DIAGNOSTIC, 17, -6.474359174987e-01, 2.393405714229e-06, 3.1715e+00, 9.4466e-02, + 2DIAGNOSTIC, 18, -6.474369709747e-01, 2.043838447971e-06, 3.2655e+00, 9.4000e-02, + 2DIAGNOSTIC, 19, -6.474475572813e-01, 2.139984179333e-06, 3.3734e+00, 1.0793e-01, + 2DIAGNOSTIC, 20, -6.474507384545e-01, 2.326719303433e-06, 3.4981e+00, 1.2470e-01, + 2DIAGNOSTIC, 21, -6.474514076416e-01, 2.451380291965e-06, 3.6106e+00, 1.1241e-01, + 2DIAGNOSTIC, 22, -6.474512614859e-01, 2.446850817892e-06, 3.7279e+00, 1.1735e-01, + 2DIAGNOSTIC, 23, -6.474505241131e-01, 2.341314623178e-06, 3.8286e+00, 1.0069e-01, + 2DIAGNOSTIC, 24, -6.474485245761e-01, 2.173960432908e-06, 3.9380e+00, 1.0937e-01, + 2DIAGNOSTIC, 25, -6.474515751325e-01, 1.984463974862e-06, 4.0450e+00, 1.0708e-01, + 2DIAGNOSTIC, 26, -6.474620816866e-01, 1.890452844738e-06, 4.1517e+00, 1.0665e-01, + 2DIAGNOSTIC, 27, -6.474602360225e-01, 1.748813495461e-06, 4.2593e+00, 1.0759e-01, + 2DIAGNOSTIC, 28, -6.474599876403e-01, 1.576048078621e-06, 4.3660e+00, 1.0669e-01, + 2DIAGNOSTIC, 29, -6.474562421838e-01, 1.478700021838e-06, 4.4706e+00, 1.0461e-01, + 2DIAGNOSTIC, 30, -6.474524426184e-01, 1.342098940489e-06, 4.5732e+00, 1.0258e-01, + 2DIAGNOSTIC, 31, -6.474551239657e-01, 1.232859258384e-06, 4.6746e+00, 1.0145e-01, + 2DIAGNOSTIC, 32, -6.474559870767e-01, 1.118740571883e-06, 4.7771e+00, 1.0247e-01, + 2DIAGNOSTIC, 33, -6.474587216101e-01, 1.029450914784e-06, 4.8658e+00, 8.8730e-02, + 2DIAGNOSTIC, 34, -6.474655787500e-01, 1.002758423921e-06, 4.9816e+00, 1.1578e-01, + 2DIAGNOSTIC, 35, -6.474680172470e-01, 1.034957441106e-06, 5.0715e+00, 8.9854e-02, + 2DIAGNOSTIC, 36, -6.474651825013e-01, 1.147107775556e-06, 5.1642e+00, 9.2754e-02, + 2DIAGNOSTIC, 37, -6.474742015947e-01, 1.314286719720e-06, 5.2742e+00, 1.0995e-01, + 2DIAGNOSTIC, 38, -6.474807561050e-01, 1.499679599223e-06, 5.3656e+00, 9.1427e-02, + 2DIAGNOSTIC, 39, -6.474785728792e-01, 1.544511948674e-06, 5.4882e+00, 1.2258e-01, + 2DIAGNOSTIC, 40, -6.474813184929e-01, 1.508344728493e-06, 5.5901e+00, 1.0195e-01, + 2DIAGNOSTIC, 41, -6.474807767703e-01, 1.430177247397e-06, 5.6805e+00, 9.0387e-02, + 2DIAGNOSTIC, 42, -6.474791114447e-01, 1.283743732882e-06, 5.8019e+00, 1.2136e-01, + 2DIAGNOSTIC, 43, -6.474779650218e-01, 1.107369397003e-06, 5.9097e+00, 1.0783e-01, + Elapsed time (stage 1): 6.0410e+00 + + +Total elapsed time: 1.2061e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:35:32 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:35:33 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5561221eb4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [109.153, 59.7173, -109.454] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5561221f0fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3db1319010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5561221ec850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [109.153, 59.7173, -109.454] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5561221e9f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3dadc5a010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x556122203b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [109.153, 59.7173, -109.454] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5561221f0550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3daa59b010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x556122208d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [109.153, 59.7173, -109.454] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556122206c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3da6edc010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55612220af70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [109.153, 59.7173, -109.454] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5561222093a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3da381d010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55612220b540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [109.153, 59.7173, -109.454] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55612220b4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3da015e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.156121562483e-01, 1.797693134862e+308, 2.2492e-01, 2.2492e-01, + 2DIAGNOSTIC, 2, -7.171543896259e-01, 1.797693134862e+308, 2.2709e-01, 2.1729e-03, + 2DIAGNOSTIC, 3, -7.188985828130e-01, 1.797693134862e+308, 2.2927e-01, 2.1780e-03, + 2DIAGNOSTIC, 4, -7.198963723651e-01, 1.797693134862e+308, 2.3140e-01, 2.1269e-03, + 2DIAGNOSTIC, 5, -7.201275821999e-01, 1.797693134862e+308, 2.3379e-01, 2.3911e-03, + 2DIAGNOSTIC, 6, -7.202115321023e-01, 1.797693134862e+308, 2.3616e-01, 2.3711e-03, + 2DIAGNOSTIC, 7, -7.201382033647e-01, 1.797693134862e+308, 2.3822e-01, 2.0621e-03, + 2DIAGNOSTIC, 8, -7.200648787189e-01, 1.797693134862e+308, 2.4031e-01, 2.0919e-03, + 2DIAGNOSTIC, 9, -7.201484580115e-01, 1.797693134862e+308, 2.4236e-01, 2.0490e-03, + 2DIAGNOSTIC, 10, -7.203858570955e-01, 3.325287491248e-04, 2.4471e-01, 2.3489e-03, + 2DIAGNOSTIC, 11, -7.208611280751e-01, 1.875504812934e-04, 2.4867e-01, 3.9589e-03, + 2DIAGNOSTIC, 12, -7.208760907235e-01, 1.000872723621e-04, 2.5099e-01, 2.3181e-03, + 2DIAGNOSTIC, 13, -7.208818497031e-01, 7.004201784197e-05, 2.5348e-01, 2.4951e-03, + 2DIAGNOSTIC, 14, -7.208937581880e-01, 6.660664949863e-05, 2.5589e-01, 2.4049e-03, + 2DIAGNOSTIC, 15, -7.207622281584e-01, 6.010271683306e-05, 2.5829e-01, 2.3968e-03, + 2DIAGNOSTIC, 16, -7.207817849565e-01, 5.159168787269e-05, 2.6146e-01, 3.1691e-03, + 2DIAGNOSTIC, 17, -7.210669662702e-01, 4.450467630661e-05, 2.6852e-01, 7.0670e-03, + 2DIAGNOSTIC, 18, -7.210669648848e-01, 3.261546910449e-05, 2.7064e-01, 2.1138e-03, + 2DIAGNOSTIC, 19, -7.210669679297e-01, 2.092405198281e-05, 2.7276e-01, 2.1279e-03, + 2DIAGNOSTIC, 20, -7.210669730777e-01, 1.316945231482e-05, 2.7487e-01, 2.1060e-03, + 2DIAGNOSTIC, 21, -7.210669817792e-01, 1.398776211886e-05, 2.7703e-01, 2.1570e-03, + 2DIAGNOSTIC, 22, -7.210669964828e-01, 1.370944839315e-05, 2.7935e-01, 2.3229e-03, + 2DIAGNOSTIC, 23, -7.210670213163e-01, 1.236141432608e-05, 2.8161e-01, 2.2600e-03, + 2DIAGNOSTIC, 24, -7.210670632236e-01, 1.043578874486e-05, 2.8386e-01, 2.2500e-03, + 2DIAGNOSTIC, 25, -7.210671338439e-01, 5.779644109236e-06, 2.8616e-01, 2.3041e-03, + 2DIAGNOSTIC, 26, -7.210672525663e-01, 1.232702843967e-06, 2.8841e-01, 2.2418e-03, + 2DIAGNOSTIC, 27, -7.210674513378e-01, 1.192325930433e-06, 2.9060e-01, 2.1980e-03, + 2DIAGNOSTIC, 28, -7.210677818774e-01, 1.158195814768e-06, 2.9283e-01, 2.2290e-03, + 2DIAGNOSTIC, 29, -7.210683252566e-01, 1.131786879660e-06, 2.9503e-01, 2.1930e-03, + 2DIAGNOSTIC, 30, -7.210692015296e-01, 1.115398929767e-06, 2.9723e-01, 2.2039e-03, + 2DIAGNOSTIC, 31, -7.210705712570e-01, 1.112289022775e-06, 2.9970e-01, 2.4722e-03, + 2DIAGNOSTIC, 32, -7.210713733561e-01, 1.111068538145e-06, 3.0193e-01, 2.2309e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.164843456842e-01, 1.797693134862e+308, 5.5131e-01, 2.4937e-01, + 2DIAGNOSTIC, 2, -6.179171554826e-01, 1.797693134862e+308, 5.6594e-01, 1.4632e-02, + 2DIAGNOSTIC, 3, -6.188528885709e-01, 1.797693134862e+308, 5.7977e-01, 1.3832e-02, + 2DIAGNOSTIC, 4, -6.190695471315e-01, 1.797693134862e+308, 5.9345e-01, 1.3679e-02, + 2DIAGNOSTIC, 5, -6.191188762259e-01, 1.797693134862e+308, 6.1089e-01, 1.7439e-02, + 2DIAGNOSTIC, 6, -6.191287732892e-01, 1.797693134862e+308, 6.3054e-01, 1.9651e-02, + 2DIAGNOSTIC, 7, -6.190685544348e-01, 1.797693134862e+308, 6.4636e-01, 1.5817e-02, + 2DIAGNOSTIC, 8, -6.190741490286e-01, 1.797693134862e+308, 6.6175e-01, 1.5390e-02, + 2DIAGNOSTIC, 9, -6.190746067163e-01, 1.797693134862e+308, 6.7748e-01, 1.5731e-02, + 2DIAGNOSTIC, 10, -6.190692578417e-01, 1.755653099260e-04, 6.9164e-01, 1.4164e-02, + 2DIAGNOSTIC, 11, -6.190653340320e-01, 5.759414971662e-05, 7.0576e-01, 1.4113e-02, + 2DIAGNOSTIC, 12, -6.190600612910e-01, 8.175394207804e-06, 7.2131e-01, 1.5551e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.120582043806e-01, 1.797693134862e+308, 1.1022e+00, 3.8094e-01, + 2DIAGNOSTIC, 2, -5.124608772614e-01, 1.797693134862e+308, 1.2012e+00, 9.8927e-02, + 2DIAGNOSTIC, 3, -5.126332966437e-01, 1.797693134862e+308, 1.3012e+00, 1.0007e-01, + 2DIAGNOSTIC, 4, -5.127610585097e-01, 1.797693134862e+308, 1.3972e+00, 9.5983e-02, + 2DIAGNOSTIC, 5, -5.127734498895e-01, 1.797693134862e+308, 1.5087e+00, 1.1150e-01, + 2DIAGNOSTIC, 6, -5.129069073970e-01, 1.797693134862e+308, 1.6813e+00, 1.7260e-01, + 2DIAGNOSTIC, 7, -5.128974690365e-01, 1.797693134862e+308, 1.8263e+00, 1.4501e-01, + 2DIAGNOSTIC, 8, -5.128957435243e-01, 1.797693134862e+308, 1.9502e+00, 1.2388e-01, + 2DIAGNOSTIC, 9, -5.128911125087e-01, 1.797693134862e+308, 2.0697e+00, 1.1951e-01, + 2DIAGNOSTIC, 10, -5.128886340860e-01, 8.501559726018e-05, 2.1821e+00, 1.1238e-01, + 2DIAGNOSTIC, 11, -5.128859637498e-01, 4.295254207921e-05, 2.2805e+00, 9.8412e-02, + 2DIAGNOSTIC, 12, -5.128849982961e-01, 2.270058216657e-05, 2.3877e+00, 1.0715e-01, + 2DIAGNOSTIC, 13, -5.128854557224e-01, 1.107036141679e-05, 2.4822e+00, 9.4514e-02, + 2DIAGNOSTIC, 14, -5.128847129816e-01, 5.392157842066e-06, 2.5768e+00, 9.4584e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.446458766134e-01, 1.797693134862e+308, 3.8399e+00, 1.2631e+00, + 2DIAGNOSTIC, 2, -4.447823622431e-01, 1.797693134862e+308, 4.3833e+00, 5.4347e-01, + 2DIAGNOSTIC, 3, -4.447833670405e-01, 1.797693134862e+308, 5.1398e+00, 7.5643e-01, + 2DIAGNOSTIC, 4, -4.447812578718e-01, 1.797693134862e+308, 5.7824e+00, 6.4260e-01, + 2DIAGNOSTIC, 5, -4.447824078039e-01, 1.797693134862e+308, 6.3953e+00, 6.1292e-01, + 2DIAGNOSTIC, 6, -4.447811356576e-01, 1.797693134862e+308, 7.0078e+00, 6.1255e-01, + 2DIAGNOSTIC, 7, -4.447809853701e-01, 1.797693134862e+308, 7.7082e+00, 7.0040e-01, + 2DIAGNOSTIC, 8, -4.447812361524e-01, 1.797693134862e+308, 8.3471e+00, 6.3889e-01, + 2DIAGNOSTIC, 9, -4.447805787825e-01, 1.797693134862e+308, 8.9437e+00, 5.9657e-01, + 2DIAGNOSTIC, 10, -4.447801193309e-01, 1.154257068545e-05, 9.5589e+00, 6.1526e-01, + 2DIAGNOSTIC, 11, -4.447805055048e-01, 2.558315713927e-06, 1.0121e+01, 5.6178e-01, + 2DIAGNOSTIC, 12, -4.447805785245e-01, 2.370188447842e-06, 1.0820e+01, 6.9955e-01, + 2DIAGNOSTIC, 13, -4.447805722141e-01, 2.287763644554e-06, 1.1440e+01, 6.1972e-01, + 2DIAGNOSTIC, 14, -4.447804436760e-01, 2.127999179188e-06, 1.2065e+01, 6.2529e-01, + 2DIAGNOSTIC, 15, -4.447807570613e-01, 2.067265883268e-06, 1.2696e+01, 6.3048e-01, + 2DIAGNOSTIC, 16, -4.447809491062e-01, 1.975126289078e-06, 1.3602e+01, 9.0632e-01, + 2DIAGNOSTIC, 17, -4.447808378752e-01, 1.884103275535e-06, 1.4159e+01, 5.5717e-01, + 2DIAGNOSTIC, 18, -4.447807598794e-01, 1.809220329330e-06, 1.4789e+01, 6.2968e-01, + 2DIAGNOSTIC, 19, -4.447805575788e-01, 1.710227647472e-06, 1.5344e+01, 5.5537e-01, + 2DIAGNOSTIC, 20, -4.447807541573e-01, 1.608981737206e-06, 1.5966e+01, 6.2200e-01, + 2DIAGNOSTIC, 21, -4.447806318980e-01, 1.523153853808e-06, 1.6716e+01, 7.4965e-01, + 2DIAGNOSTIC, 22, -4.447801178386e-01, 1.431762481650e-06, 1.7622e+01, 9.0576e-01, + 2DIAGNOSTIC, 23, -4.447804556370e-01, 1.359672659317e-06, 1.8522e+01, 8.9983e-01, + 2DIAGNOSTIC, 24, -4.447804592720e-01, 1.291834743254e-06, 1.9336e+01, 8.1488e-01, + 2DIAGNOSTIC, 25, -4.447804753817e-01, 1.240626397975e-06, 2.0231e+01, 8.9416e-01, + 2DIAGNOSTIC, 26, -4.447805945312e-01, 1.204174038032e-06, 2.1327e+01, 1.0961e+00, + 2DIAGNOSTIC, 27, -4.447805829176e-01, 1.169514651164e-06, 2.2424e+01, 1.0970e+00, + 2DIAGNOSTIC, 28, -4.447804733727e-01, 1.133967492087e-06, 2.3320e+01, 8.9617e-01, + 2DIAGNOSTIC, 29, -4.447803461888e-01, 1.093548132505e-06, 2.4225e+01, 9.0490e-01, + 2DIAGNOSTIC, 30, -4.447800733814e-01, 1.054607082725e-06, 2.5022e+01, 7.9683e-01, + 2DIAGNOSTIC, 31, -4.447801510344e-01, 1.018241293969e-06, 2.5824e+01, 8.0260e-01, + Elapsed time (stage 0): 2.6341e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.151734623533e-01, 1.797693134862e+308, 2.4097e-01, 2.4097e-01, + 2DIAGNOSTIC, 2, -7.170970207953e-01, 1.797693134862e+308, 2.4449e-01, 3.5181e-03, + 2DIAGNOSTIC, 3, -7.193241683111e-01, 1.797693134862e+308, 2.4820e-01, 3.7100e-03, + 2DIAGNOSTIC, 4, -7.219046217341e-01, 1.797693134862e+308, 2.5162e-01, 3.4270e-03, + 2DIAGNOSTIC, 5, -7.242316017818e-01, 1.797693134862e+308, 2.5457e-01, 2.9452e-03, + 2DIAGNOSTIC, 6, -7.264144989917e-01, 1.797693134862e+308, 2.5792e-01, 3.3500e-03, + 2DIAGNOSTIC, 7, -7.274478622558e-01, 1.797693134862e+308, 2.6206e-01, 4.1449e-03, + 2DIAGNOSTIC, 8, -7.277225471467e-01, 1.797693134862e+308, 2.6716e-01, 5.0941e-03, + 2DIAGNOSTIC, 9, -7.276672198175e-01, 1.797693134862e+308, 2.7075e-01, 3.5930e-03, + 2DIAGNOSTIC, 10, -7.283212460422e-01, 1.229818045674e-03, 2.7454e-01, 3.7851e-03, + 2DIAGNOSTIC, 11, -7.285374546804e-01, 9.003224345011e-04, 2.7831e-01, 3.7789e-03, + 2DIAGNOSTIC, 12, -7.286137268714e-01, 6.103413059232e-04, 2.8123e-01, 2.9140e-03, + 2DIAGNOSTIC, 13, -7.287376755058e-01, 3.810640076632e-04, 2.8420e-01, 2.9700e-03, + 2DIAGNOSTIC, 14, -7.288428934395e-01, 2.248285495004e-04, 2.8808e-01, 3.8781e-03, + 2DIAGNOSTIC, 15, -7.288859815725e-01, 1.296308509885e-04, 2.9127e-01, 3.1979e-03, + 2DIAGNOSTIC, 16, -7.289140179494e-01, 8.806062506928e-05, 2.9578e-01, 4.5030e-03, + 2DIAGNOSTIC, 17, -7.289260547407e-01, 6.758814565284e-05, 2.9959e-01, 3.8161e-03, + 2DIAGNOSTIC, 18, -7.289372836906e-01, 4.978807012319e-05, 3.0331e-01, 3.7169e-03, + 2DIAGNOSTIC, 19, -7.289387712290e-01, 2.796079897670e-05, 3.0725e-01, 3.9361e-03, + 2DIAGNOSTIC, 20, -7.289394142829e-01, 1.861199049236e-05, 3.1056e-01, 3.3102e-03, + 2DIAGNOSTIC, 21, -7.289414867339e-01, 1.264911067395e-05, 3.1347e-01, 2.9089e-03, + 2DIAGNOSTIC, 22, -7.289437520766e-01, 7.553073181531e-06, 3.1701e-01, 3.5419e-03, + 2DIAGNOSTIC, 23, -7.289458907712e-01, 4.435983307557e-06, 3.2573e-01, 8.7252e-03, + 2DIAGNOSTIC, 24, -7.289458907533e-01, 2.995937959230e-06, 3.3480e-01, 9.0711e-03, + 2DIAGNOSTIC, 25, -7.289458907533e-01, 2.182190047807e-06, 3.3816e-01, 3.3579e-03, + 2DIAGNOSTIC, 26, -7.289458907533e-01, 1.764731290321e-06, 3.4151e-01, 3.3500e-03, + 2DIAGNOSTIC, 27, -7.289458907533e-01, 1.496913960758e-06, 3.4489e-01, 3.3741e-03, + 2DIAGNOSTIC, 28, -7.289458907533e-01, 1.374675284341e-06, 3.4806e-01, 3.1772e-03, + 2DIAGNOSTIC, 29, -7.289458907533e-01, 1.259177985276e-06, 3.5263e-01, 4.5629e-03, + 2DIAGNOSTIC, 30, -7.289458907533e-01, 1.144743474013e-06, 3.5807e-01, 5.4440e-03, + 2DIAGNOSTIC, 31, -7.289458907533e-01, 1.055610333790e-06, 3.6281e-01, 4.7390e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.091490273584e-01, 1.797693134862e+308, 6.3160e-01, 2.6879e-01, + 2DIAGNOSTIC, 2, -6.108907336718e-01, 1.797693134862e+308, 6.4999e-01, 1.8391e-02, + 2DIAGNOSTIC, 3, -6.129857974421e-01, 1.797693134862e+308, 6.7101e-01, 2.1019e-02, + 2DIAGNOSTIC, 4, -6.148945467241e-01, 1.797693134862e+308, 6.9114e-01, 2.0126e-02, + 2DIAGNOSTIC, 5, -6.163551615537e-01, 1.797693134862e+308, 7.1006e-01, 1.8926e-02, + 2DIAGNOSTIC, 6, -6.175361557268e-01, 1.797693134862e+308, 7.3086e-01, 2.0797e-02, + 2DIAGNOSTIC, 7, -6.192570778175e-01, 1.797693134862e+308, 7.6003e-01, 2.9171e-02, + 2DIAGNOSTIC, 8, -6.197526502704e-01, 1.797693134862e+308, 7.8054e-01, 2.0507e-02, + 2DIAGNOSTIC, 9, -6.198255229091e-01, 1.797693134862e+308, 7.9994e-01, 1.9399e-02, + 2DIAGNOSTIC, 10, -6.198682876395e-01, 1.179954817063e-03, 8.2493e-01, 2.4994e-02, + 2DIAGNOSTIC, 11, -6.198959555817e-01, 8.559107069022e-04, 8.4731e-01, 2.2382e-02, + 2DIAGNOSTIC, 12, -6.199121818505e-01, 5.753889353132e-04, 8.6790e-01, 2.0585e-02, + 2DIAGNOSTIC, 13, -6.199467254390e-01, 3.608573474201e-04, 8.8782e-01, 1.9917e-02, + 2DIAGNOSTIC, 14, -6.199616143672e-01, 2.077412664038e-04, 9.1213e-01, 2.4316e-02, + 2DIAGNOSTIC, 15, -6.199735725966e-01, 1.013906382558e-04, 9.4001e-01, 2.7874e-02, + 2DIAGNOSTIC, 16, -6.199762444300e-01, 3.211386724374e-05, 9.5952e-01, 1.9509e-02, + 2DIAGNOSTIC, 17, -6.199837049998e-01, 1.468104913500e-05, 9.8054e-01, 2.1024e-02, + 2DIAGNOSTIC, 18, -6.199860498449e-01, 1.068921819362e-05, 9.9945e-01, 1.8909e-02, + 2DIAGNOSTIC, 19, -6.199905083594e-01, 8.141101719449e-06, 1.0247e+00, 2.5254e-02, + 2DIAGNOSTIC, 20, -6.199919257765e-01, 6.257802157558e-06, 1.0446e+00, 1.9886e-02, + 2DIAGNOSTIC, 21, -6.199943842567e-01, 4.782586663539e-06, 1.0660e+00, 2.1379e-02, + 2DIAGNOSTIC, 22, -6.199984732730e-01, 3.546277711215e-06, 1.0893e+00, 2.3299e-02, + 2DIAGNOSTIC, 23, -6.200025140559e-01, 2.985089804605e-06, 1.1126e+00, 2.3381e-02, + 2DIAGNOSTIC, 24, -6.200031651577e-01, 2.612778177022e-06, 1.1361e+00, 2.3498e-02, + 2DIAGNOSTIC, 25, -6.200032326919e-01, 2.372671648238e-06, 1.1568e+00, 2.0623e-02, + 2DIAGNOSTIC, 26, -6.200033206017e-01, 2.094865473916e-06, 1.1762e+00, 1.9432e-02, + 2DIAGNOSTIC, 27, -6.200034464394e-01, 1.883734894403e-06, 1.2005e+00, 2.4264e-02, + 2DIAGNOSTIC, 28, -6.200034578897e-01, 1.657509647930e-06, 1.2313e+00, 3.0838e-02, + 2DIAGNOSTIC, 29, -6.200034581446e-01, 1.469067694965e-06, 1.2560e+00, 2.4700e-02, + 2DIAGNOSTIC, 30, -6.200034581995e-01, 1.280621974235e-06, 1.2812e+00, 2.5158e-02, + 2DIAGNOSTIC, 31, -6.200034582118e-01, 1.119265536149e-06, 1.3086e+00, 2.7439e-02, + 2DIAGNOSTIC, 32, -6.200034582134e-01, 1.016514412339e-06, 1.3365e+00, 2.7907e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.157838538228e-01, 1.797693134862e+308, 1.8210e+00, 4.8453e-01, + 2DIAGNOSTIC, 2, -5.163116418148e-01, 1.797693134862e+308, 1.9590e+00, 1.3800e-01, + 2DIAGNOSTIC, 3, -5.166364413830e-01, 1.797693134862e+308, 2.1003e+00, 1.4128e-01, + 2DIAGNOSTIC, 4, -5.168262606416e-01, 1.797693134862e+308, 2.2648e+00, 1.6448e-01, + 2DIAGNOSTIC, 5, -5.170744278005e-01, 1.797693134862e+308, 2.7495e+00, 4.8468e-01, + 2DIAGNOSTIC, 6, -5.170744253643e-01, 1.797693134862e+308, 2.8873e+00, 1.3786e-01, + 2DIAGNOSTIC, 7, -5.170744312477e-01, 1.797693134862e+308, 3.0281e+00, 1.4073e-01, + 2DIAGNOSTIC, 8, -5.170744411927e-01, 1.797693134862e+308, 3.1710e+00, 1.4297e-01, + 2DIAGNOSTIC, 9, -5.170744579980e-01, 1.797693134862e+308, 3.3150e+00, 1.4398e-01, + 2DIAGNOSTIC, 10, -5.170744864013e-01, 1.340897078607e-04, 3.4552e+00, 1.4021e-01, + 2DIAGNOSTIC, 11, -5.170745343584e-01, 6.887533091250e-05, 3.5915e+00, 1.3625e-01, + 2DIAGNOSTIC, 12, -5.170746151311e-01, 3.267161546637e-05, 3.7296e+00, 1.3814e-01, + 2DIAGNOSTIC, 13, -5.170747508516e-01, 1.296994087470e-05, 3.8772e+00, 1.4757e-01, + 2DIAGNOSTIC, 14, -5.170749783937e-01, 2.312753032543e-06, 4.0212e+00, 1.4403e-01, + 2DIAGNOSTIC, 15, -5.170753586617e-01, 2.184091569865e-06, 4.1639e+00, 1.4273e-01, + 2DIAGNOSTIC, 16, -5.170759890477e-01, 2.087110949497e-06, 4.3099e+00, 1.4598e-01, + 2DIAGNOSTIC, 17, -5.170770209100e-01, 2.025683766955e-06, 4.4533e+00, 1.4340e-01, + 2DIAGNOSTIC, 18, -5.170786748538e-01, 2.007119817175e-06, 4.6029e+00, 1.4961e-01, + 2DIAGNOSTIC, 19, -5.170811890980e-01, 2.040718506187e-06, 4.7391e+00, 1.3617e-01, + 2DIAGNOSTIC, 20, -5.170848522256e-01, 2.137235842505e-06, 4.8827e+00, 1.4357e-01, + 2DIAGNOSTIC, 21, -5.170901343412e-01, 2.311621427352e-06, 5.0267e+00, 1.4399e-01, + 2DIAGNOSTIC, 22, -5.170964844399e-01, 2.554313908533e-06, 5.1723e+00, 1.4564e-01, + 2DIAGNOSTIC, 23, -5.171025789960e-01, 2.818965462725e-06, 5.3209e+00, 1.4862e-01, + 2DIAGNOSTIC, 24, -5.171088959308e-01, 3.075507498410e-06, 5.4708e+00, 1.4982e-01, + 2DIAGNOSTIC, 25, -5.171181799900e-01, 3.358111330613e-06, 5.6036e+00, 1.3283e-01, + 2DIAGNOSTIC, 26, -5.171358713984e-01, 3.806296438057e-06, 5.7490e+00, 1.4541e-01, + 2DIAGNOSTIC, 27, -5.171535836647e-01, 4.351539798997e-06, 5.9085e+00, 1.5953e-01, + 2DIAGNOSTIC, 28, -5.171595156142e-01, 4.702870432270e-06, 6.1057e+00, 1.9719e-01, + 2DIAGNOSTIC, 29, -5.171622984552e-01, 4.797909617708e-06, 6.2413e+00, 1.3558e-01, + 2DIAGNOSTIC, 30, -5.171642799906e-01, 4.641193777292e-06, 6.3773e+00, 1.3595e-01, + 2DIAGNOSTIC, 31, -5.171675512841e-01, 4.301447171694e-06, 6.5790e+00, 2.0176e-01, + 2DIAGNOSTIC, 32, -5.171684808563e-01, 3.791494265160e-06, 6.7172e+00, 1.3818e-01, + 2DIAGNOSTIC, 33, -5.171685802463e-01, 3.151780099492e-06, 6.8536e+00, 1.3637e-01, + 2DIAGNOSTIC, 34, -5.171688596352e-01, 2.452245181438e-06, 6.9895e+00, 1.3598e-01, + 2DIAGNOSTIC, 35, -5.171695513992e-01, 1.801438398757e-06, 7.1450e+00, 1.5543e-01, + 2DIAGNOSTIC, 36, -5.171698832721e-01, 1.369936124044e-06, 7.2961e+00, 1.5112e-01, + 2DIAGNOSTIC, 37, -5.171702213158e-01, 1.181749282205e-06, 7.5193e+00, 2.2320e-01, + 2DIAGNOSTIC, 38, -5.171703023994e-01, 1.059757273512e-06, 7.6678e+00, 1.4854e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.443816993989e-01, 1.797693134862e+308, 9.2928e+00, 1.6250e+00, + 2DIAGNOSTIC, 2, -4.445734811419e-01, 1.797693134862e+308, 1.0161e+01, 8.6794e-01, + 2DIAGNOSTIC, 3, -4.447062969288e-01, 1.797693134862e+308, 1.1040e+01, 8.7914e-01, + 2DIAGNOSTIC, 4, -4.448309330936e-01, 1.797693134862e+308, 1.2341e+01, 1.3012e+00, + 2DIAGNOSTIC, 5, -4.448840324325e-01, 1.797693134862e+308, 1.3319e+01, 9.7760e-01, + 2DIAGNOSTIC, 6, -4.448858576257e-01, 1.797693134862e+308, 1.4194e+01, 8.7575e-01, + 2DIAGNOSTIC, 7, -4.448897048008e-01, 1.797693134862e+308, 1.5082e+01, 8.8708e-01, + 2DIAGNOSTIC, 8, -4.449026844990e-01, 1.797693134862e+308, 1.5958e+01, 8.7631e-01, + 2DIAGNOSTIC, 9, -4.449215669384e-01, 1.797693134862e+308, 1.6830e+01, 8.7195e-01, + 2DIAGNOSTIC, 10, -4.449984297395e-01, 7.260113103957e-05, 1.7704e+01, 8.7454e-01, + 2DIAGNOSTIC, 11, -4.461627191693e-01, 1.142359560631e-04, 2.0086e+01, 2.3812e+00, + 2DIAGNOSTIC, 12, -4.461624366785e-01, 1.473352141814e-04, 2.1363e+01, 1.2779e+00, + 2DIAGNOSTIC, 13, -4.461623898041e-01, 1.693837082114e-04, 2.2337e+01, 9.7393e-01, + 2DIAGNOSTIC, 14, -4.461619246404e-01, 1.795478817761e-04, 2.3315e+01, 9.7787e-01, + 2DIAGNOSTIC, 15, -4.461618946325e-01, 1.741951496990e-04, 2.4186e+01, 8.7067e-01, + 2DIAGNOSTIC, 16, -4.461618894438e-01, 1.530274849136e-04, 2.5147e+01, 9.6073e-01, + 2DIAGNOSTIC, 17, -4.461617236558e-01, 1.204670000780e-04, 2.6219e+01, 1.0727e+00, + 2DIAGNOSTIC, 18, -4.461616477209e-01, 8.172048777150e-05, 2.7090e+01, 8.7024e-01, + 2DIAGNOSTIC, 19, -4.461614696409e-01, 4.067669495179e-05, 2.8059e+01, 9.6928e-01, + 2DIAGNOSTIC, 20, -4.461615957077e-01, 1.510503203371e-06, 2.8934e+01, 8.7530e-01, + 2DIAGNOSTIC, 21, -4.461611663482e-01, 1.443264788063e-06, 2.9919e+01, 9.8497e-01, + 2DIAGNOSTIC, 22, -4.461613040464e-01, 1.385097823832e-06, 3.0782e+01, 8.6297e-01, + 2DIAGNOSTIC, 23, -4.461612154186e-01, 1.334348329697e-06, 3.1667e+01, 8.8443e-01, + 2DIAGNOSTIC, 24, -4.461616087402e-01, 1.290609673736e-06, 3.2844e+01, 1.1771e+00, + 2DIAGNOSTIC, 25, -4.461615586480e-01, 1.251426035451e-06, 3.3827e+01, 9.8360e-01, + 2DIAGNOSTIC, 26, -4.461611741918e-01, 1.208113616147e-06, 3.4800e+01, 9.7259e-01, + 2DIAGNOSTIC, 27, -4.461610994396e-01, 1.164349951024e-06, 3.5675e+01, 8.7534e-01, + 2DIAGNOSTIC, 28, -4.461610839427e-01, 1.122964896828e-06, 3.6744e+01, 1.0692e+00, + 2DIAGNOSTIC, 29, -4.461611499562e-01, 1.082901185029e-06, 3.7719e+01, 9.7502e-01, + 2DIAGNOSTIC, 30, -4.461610475574e-01, 1.047660291673e-06, 3.8584e+01, 8.6464e-01, + 2DIAGNOSTIC, 31, -4.461609853569e-01, 1.006129155878e-06, 3.9766e+01, 1.1823e+00, + Elapsed time (stage 1): 4.0263e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.250898848520e-01, 1.797693134862e+308, 2.9682e-01, 2.9682e-01, + 1DIAGNOSTIC, 2, -9.368045695585e-01, 1.797693134862e+308, 4.1182e-01, 1.1500e-01, + 1DIAGNOSTIC, 3, -9.444782443157e-01, 1.797693134862e+308, 5.3163e-01, 1.1981e-01, + 1DIAGNOSTIC, 4, -9.502802984637e-01, 1.797693134862e+308, 6.5069e-01, 1.1906e-01, + 1DIAGNOSTIC, 5, -9.545444317932e-01, 1.797693134862e+308, 7.7356e-01, 1.2287e-01, + 1DIAGNOSTIC, 6, -9.576083056416e-01, 1.797693134862e+308, 8.7983e-01, 1.0626e-01, + 1DIAGNOSTIC, 7, -9.603083590807e-01, 1.797693134862e+308, 9.8011e-01, 1.0029e-01, + 1DIAGNOSTIC, 8, -9.627888933560e-01, 1.797693134862e+308, 1.0787e+00, 9.8598e-02, + 1DIAGNOSTIC, 9, -9.646176453311e-01, 1.797693134862e+308, 1.1788e+00, 1.0013e-01, + 1DIAGNOSTIC, 10, -9.652082650920e-01, 2.464498993947e-03, 1.2767e+00, 9.7859e-02, + 1DIAGNOSTIC, 11, -9.656663505307e-01, 1.665041870114e-03, 1.3738e+00, 9.7119e-02, + 1DIAGNOSTIC, 12, -9.658658823361e-01, 1.144103147721e-03, 1.4714e+00, 9.7594e-02, + 1DIAGNOSTIC, 13, -9.664499946901e-01, 7.875503293334e-04, 1.5793e+00, 1.0789e-01, + 1DIAGNOSTIC, 14, -9.660873980162e-01, 5.248148915068e-04, 1.6826e+00, 1.0333e-01, + 1DIAGNOSTIC, 15, -9.665694173802e-01, 3.435046877519e-04, 1.7891e+00, 1.0642e-01, + 1DIAGNOSTIC, 16, -9.661748429130e-01, 2.026326043140e-04, 1.8991e+00, 1.1005e-01, + 1DIAGNOSTIC, 17, -9.668015932445e-01, 1.174520745573e-04, 1.9983e+00, 9.9198e-02, + 1DIAGNOSTIC, 18, -9.663620533241e-01, 6.375326086269e-05, 2.0919e+00, 9.3568e-02, + 1DIAGNOSTIC, 19, -9.670536077183e-01, 4.944569073058e-05, 2.1927e+00, 1.0084e-01, + 1DIAGNOSTIC, 20, -9.665789016120e-01, 3.354662836014e-05, 2.2930e+00, 1.0025e-01, + 1DIAGNOSTIC, 21, -9.673274969056e-01, 3.339268977674e-05, 2.3867e+00, 9.3690e-02, + 1DIAGNOSTIC, 22, -9.668927859612e-01, 2.662282825897e-05, 2.4774e+00, 9.0724e-02, + 1DIAGNOSTIC, 23, -9.675837226127e-01, 3.483151750056e-05, 2.5718e+00, 9.4415e-02, + 1DIAGNOSTIC, 24, -9.669939367571e-01, 2.711594163155e-05, 2.6663e+00, 9.4486e-02, + 1DIAGNOSTIC, 25, -9.676978019571e-01, 3.201420782707e-05, 2.7584e+00, 9.2144e-02, + 1DIAGNOSTIC, 26, -9.671546616023e-01, 2.255660867970e-05, 2.8563e+00, 9.7915e-02, + 1DIAGNOSTIC, 27, -9.678633021050e-01, 2.673971346852e-05, 2.9528e+00, 9.6424e-02, + 1DIAGNOSTIC, 28, -9.671903660099e-01, 1.608501946603e-05, 3.0532e+00, 1.0048e-01, + 1DIAGNOSTIC, 29, -9.679179631334e-01, 1.961781944995e-05, 3.1606e+00, 1.0739e-01, + 1DIAGNOSTIC, 30, -9.673679309837e-01, 1.067434115200e-05, 3.2666e+00, 1.0594e-01, + 1DIAGNOSTIC, 31, -9.680455715122e-01, 1.526325772375e-05, 3.3639e+00, 9.7337e-02, + 1DIAGNOSTIC, 32, -9.673221999074e-01, 7.186802207813e-06, 3.4606e+00, 9.6675e-02, + 1DIAGNOSTIC, 33, -9.680077296095e-01, 1.171088776235e-05, 3.5574e+00, 9.6830e-02, + 1DIAGNOSTIC, 34, -9.673887315977e-01, 4.103493913547e-06, 3.6530e+00, 9.5582e-02, + 1DIAGNOSTIC, 35, -9.680852099032e-01, 8.706665067190e-06, 3.7506e+00, 9.7626e-02, + 1DIAGNOSTIC, 36, -9.673458818399e-01, 1.474713904874e-06, 3.8479e+00, 9.7295e-02, + 1DIAGNOSTIC, 37, -9.680526496309e-01, 6.232413129855e-06, 3.9494e+00, 1.0148e-01, + 1DIAGNOSTIC, 38, -9.674646733012e-01, 1.202939102878e-07, 4.0519e+00, 1.0254e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.279790831652e-01, 1.797693134862e+308, 4.8959e+00, 8.4397e-01, + 1DIAGNOSTIC, 2, -9.321144273078e-01, 1.797693134862e+308, 5.5759e+00, 6.7995e-01, + 1DIAGNOSTIC, 3, -9.358270144676e-01, 1.797693134862e+308, 6.2534e+00, 6.7751e-01, + 1DIAGNOSTIC, 4, -9.391027897709e-01, 1.797693134862e+308, 6.9462e+00, 6.9283e-01, + 1DIAGNOSTIC, 5, -9.415415774446e-01, 1.797693134862e+308, 7.6391e+00, 6.9293e-01, + 1DIAGNOSTIC, 6, -9.440378433877e-01, 1.797693134862e+308, 8.3032e+00, 6.6405e-01, + 1DIAGNOSTIC, 7, -9.460519249720e-01, 1.797693134862e+308, 8.9692e+00, 6.6597e-01, + 1DIAGNOSTIC, 8, -9.478518978027e-01, 1.797693134862e+308, 9.6356e+00, 6.6642e-01, + 1DIAGNOSTIC, 9, -9.494567617999e-01, 1.797693134862e+308, 1.0317e+01, 6.8186e-01, + 1DIAGNOSTIC, 10, -9.507792228572e-01, 1.514078684199e-03, 1.1010e+01, 6.9272e-01, + 1DIAGNOSTIC, 11, -9.519148954304e-01, 1.193047292360e-03, 1.1667e+01, 6.5638e-01, + 1DIAGNOSTIC, 12, -9.527963316279e-01, 9.435891375255e-04, 1.2350e+01, 6.8372e-01, + 1DIAGNOSTIC, 13, -9.535586128851e-01, 7.502228336952e-04, 1.3034e+01, 6.8335e-01, + 1DIAGNOSTIC, 14, -9.542170032938e-01, 6.005483997334e-04, 1.3707e+01, 6.7361e-01, + 1DIAGNOSTIC, 15, -9.548173580405e-01, 4.764030275987e-04, 1.4392e+01, 6.8453e-01, + 1DIAGNOSTIC, 16, -9.554041840341e-01, 3.816875858484e-04, 1.5124e+01, 7.3241e-01, + 1DIAGNOSTIC, 17, -9.559447348653e-01, 3.078334860838e-04, 1.5797e+01, 6.7319e-01, + 1DIAGNOSTIC, 18, -9.564204924727e-01, 2.514615945862e-04, 1.6478e+01, 6.8042e-01, + 1DIAGNOSTIC, 19, -9.568409992273e-01, 2.095435580380e-04, 1.7154e+01, 6.7601e-01, + 1DIAGNOSTIC, 20, -9.572320996418e-01, 1.779010189556e-04, 1.7839e+01, 6.8491e-01, + 1DIAGNOSTIC, 21, -9.576169068108e-01, 1.543172648821e-04, 1.8515e+01, 6.7614e-01, + 1DIAGNOSTIC, 22, -9.579927438097e-01, 1.355216479807e-04, 1.9191e+01, 6.7650e-01, + 1DIAGNOSTIC, 23, -9.583616286996e-01, 1.203816101797e-04, 1.9868e+01, 6.7688e-01, + 1DIAGNOSTIC, 24, -9.586642043094e-01, 1.072018810295e-04, 2.0532e+01, 6.6384e-01, + 1DIAGNOSTIC, 25, -9.589451198081e-01, 9.556820502532e-05, 2.1213e+01, 6.8137e-01, + 1DIAGNOSTIC, 26, -9.591902123759e-01, 8.541602329647e-05, 2.1961e+01, 7.4785e-01, + 1DIAGNOSTIC, 27, -9.594144633900e-01, 7.644999388635e-05, 2.2638e+01, 6.7689e-01, + 1DIAGNOSTIC, 28, -9.596087760668e-01, 6.809013354628e-05, 2.3310e+01, 6.7156e-01, + 1DIAGNOSTIC, 29, -9.597851890618e-01, 6.006846954387e-05, 2.3987e+01, 6.7700e-01, + 1DIAGNOSTIC, 30, -9.599287223009e-01, 5.227073313054e-05, 2.4662e+01, 6.7517e-01, + 1DIAGNOSTIC, 31, -9.600716093089e-01, 4.515609488549e-05, 2.5335e+01, 6.7266e-01, + 1DIAGNOSTIC, 32, -9.601678040321e-01, 3.864441767554e-05, 2.6004e+01, 6.6929e-01, + 1DIAGNOSTIC, 33, -9.602885637538e-01, 3.334488806811e-05, 2.6685e+01, 6.8113e-01, + 1DIAGNOSTIC, 34, -9.601002513937e-01, 2.623991654885e-05, 2.7361e+01, 6.7583e-01, + 1DIAGNOSTIC, 35, -9.600480004346e-01, 1.912018873724e-05, 2.8037e+01, 6.7588e-01, + 1DIAGNOSTIC, 36, -9.599694835291e-01, 1.202016459823e-05, 2.8714e+01, 6.7692e-01, + 1DIAGNOSTIC, 37, -9.599771184808e-01, 6.074194737377e-06, 2.9426e+01, 7.1236e-01, + 1DIAGNOSTIC, 38, -9.599179879865e-01, 9.707915306842e-07, 3.0114e+01, 6.8784e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.097147435094e-01, 1.797693134862e+308, 3.5878e+01, 5.7639e+00, + 1DIAGNOSTIC, 2, -9.129034942239e-01, 1.797693134862e+308, 4.1244e+01, 5.3663e+00, + 1DIAGNOSTIC, 3, -9.162340099459e-01, 1.797693134862e+308, 4.6659e+01, 5.4148e+00, + 1DIAGNOSTIC, 4, -9.192509666314e-01, 1.797693134862e+308, 5.2064e+01, 5.4054e+00, + 1DIAGNOSTIC, 5, -9.220210830167e-01, 1.797693134862e+308, 5.7471e+01, 5.4071e+00, + 1DIAGNOSTIC, 6, -9.245146352339e-01, 1.797693134862e+308, 6.2962e+01, 5.4905e+00, + 1DIAGNOSTIC, 7, -9.267736068852e-01, 1.797693134862e+308, 6.8379e+01, 5.4176e+00, + 1DIAGNOSTIC, 8, -9.288786703231e-01, 1.797693134862e+308, 7.3834e+01, 5.4549e+00, + 1DIAGNOSTIC, 9, -9.306642631552e-01, 1.797693134862e+308, 7.9322e+01, 5.4873e+00, + 1DIAGNOSTIC, 10, -9.322534767806e-01, 1.570307970681e-03, 8.4758e+01, 5.4362e+00, + 1DIAGNOSTIC, 11, -9.334956274098e-01, 1.294986722502e-03, 9.0260e+01, 5.5021e+00, + 1DIAGNOSTIC, 12, -9.345644360643e-01, 1.057823427948e-03, 9.5669e+01, 5.4087e+00, + 1DIAGNOSTIC, 13, -9.356416900768e-01, 8.651747929998e-04, 1.0112e+02, 5.4550e+00, + 1DIAGNOSTIC, 14, -9.365714924702e-01, 7.073363509864e-04, 1.0650e+02, 5.3717e+00, + 1DIAGNOSTIC, 15, -9.372598025248e-01, 5.762287542707e-04, 1.1193e+02, 5.4345e+00, + 1DIAGNOSTIC, 16, -9.378721527174e-01, 4.679323595399e-04, 1.1749e+02, 5.5582e+00, + 1DIAGNOSTIC, 17, -9.384046189945e-01, 3.793128811569e-04, 1.2302e+02, 5.5281e+00, + 1DIAGNOSTIC, 18, -9.388761287970e-01, 3.090186747285e-04, 1.2846e+02, 5.4473e+00, + 1DIAGNOSTIC, 19, -9.392961007642e-01, 2.527218582777e-04, 1.3395e+02, 5.4870e+00, + 1DIAGNOSTIC, 20, -9.396730296488e-01, 2.085365900465e-04, 1.3944e+02, 5.4902e+00, + 1DIAGNOSTIC, 21, -9.400109978698e-01, 1.720962811246e-04, 1.4491e+02, 5.4663e+00, + 1DIAGNOSTIC, 22, -9.403169564155e-01, 1.418898976215e-04, 1.5038e+02, 5.4774e+00, + 1DIAGNOSTIC, 23, -9.405983958330e-01, 1.189880674304e-04, 1.5593e+02, 5.5460e+00, + 1DIAGNOSTIC, 24, -9.408569809451e-01, 1.019385862738e-04, 1.6141e+02, 5.4824e+00, + 1DIAGNOSTIC, 25, -9.410957095217e-01, 8.798893587454e-05, 1.6696e+02, 5.5433e+00, + 1DIAGNOSTIC, 26, -9.413195914647e-01, 7.665633727973e-05, 1.7245e+02, 5.4910e+00, + 1DIAGNOSTIC, 27, -9.415295903667e-01, 6.734611612811e-05, 1.7789e+02, 5.4447e+00, + 1DIAGNOSTIC, 28, -9.417296914850e-01, 5.968569276641e-05, 1.8334e+02, 5.4487e+00, + 1DIAGNOSTIC, 29, -9.419126650227e-01, 5.328303939324e-05, 1.8876e+02, 5.4167e+00, + 1DIAGNOSTIC, 30, -9.420788136616e-01, 4.782241648668e-05, 1.9417e+02, 5.4174e+00, + 1DIAGNOSTIC, 31, -9.422342573168e-01, 4.307878707261e-05, 1.9959e+02, 5.4175e+00, + 1DIAGNOSTIC, 32, -9.423761763035e-01, 3.885585400304e-05, 2.0502e+02, 5.4310e+00, + 1DIAGNOSTIC, 33, -9.425074756751e-01, 3.505778953979e-05, 2.1046e+02, 5.4399e+00, + 1DIAGNOSTIC, 34, -9.426246318428e-01, 3.156836131443e-05, 2.1587e+02, 5.4047e+00, + 1DIAGNOSTIC, 35, -9.427346264855e-01, 2.836365598100e-05, 2.2128e+02, 5.4163e+00, + 1DIAGNOSTIC, 36, -9.428306602637e-01, 2.539610663256e-05, 2.2673e+02, 5.4447e+00, + 1DIAGNOSTIC, 37, -9.429195129686e-01, 2.268173115343e-05, 2.3216e+02, 5.4286e+00, + 1DIAGNOSTIC, 38, -9.430010699009e-01, 2.025806148534e-05, 2.3756e+02, 5.4077e+00, + 1DIAGNOSTIC, 39, -9.430733304868e-01, 1.807299010259e-05, 2.4299e+02, 5.4232e+00, + 1DIAGNOSTIC, 40, -9.431427264587e-01, 1.611940309921e-05, 2.4840e+02, 5.4107e+00, + 1DIAGNOSTIC, 41, -9.432082294458e-01, 1.441634904029e-05, 2.5386e+02, 5.4652e+00, + 1DIAGNOSTIC, 42, -9.432672982426e-01, 1.292735657423e-05, 2.5929e+02, 5.4223e+00, + 1DIAGNOSTIC, 43, -9.433244202675e-01, 1.166047975566e-05, 2.6475e+02, 5.4611e+00, + 1DIAGNOSTIC, 44, -9.433796264714e-01, 1.058205389763e-05, 2.7017e+02, 5.4232e+00, + 1DIAGNOSTIC, 45, -9.434286113545e-01, 9.668276003766e-06, 2.7562e+02, 5.4464e+00, + 1DIAGNOSTIC, 46, -9.434686445967e-01, 8.823250202822e-06, 2.8101e+02, 5.3971e+00, + 1DIAGNOSTIC, 47, -9.435111291235e-01, 8.074795728879e-06, 2.8649e+02, 5.4721e+00, + 1DIAGNOSTIC, 48, -9.435479175798e-01, 7.388032456920e-06, 2.9188e+02, 5.3888e+00, + 1DIAGNOSTIC, 49, -9.435816556195e-01, 6.732568384033e-06, 2.9734e+02, 5.4631e+00, + 1DIAGNOSTIC, 50, -9.436142616693e-01, 6.131809946387e-06, 3.0275e+02, 5.4162e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.039066049819e-01, 1.797693134862e+308, 3.4762e+02, 4.4865e+01, + 1DIAGNOSTIC, 2, -9.047371155210e-01, 1.797693134862e+308, 3.9187e+02, 4.4251e+01, + 1DIAGNOSTIC, 3, -9.059663154810e-01, 1.797693134862e+308, 4.3607e+02, 4.4196e+01, + 1DIAGNOSTIC, 4, -9.071522326802e-01, 1.797693134862e+308, 4.8015e+02, 4.4082e+01, + 1DIAGNOSTIC, 5, -9.083076408281e-01, 1.797693134862e+308, 5.2441e+02, 4.4261e+01, + 1DIAGNOSTIC, 6, -9.095077044615e-01, 1.797693134862e+308, 5.7114e+02, 4.6733e+01, + 1DIAGNOSTIC, 7, -9.107074314730e-01, 1.797693134862e+308, 6.1538e+02, 4.4240e+01, + 1DIAGNOSTIC, 8, -9.119140643058e-01, 1.797693134862e+308, 6.5960e+02, 4.4221e+01, + 1DIAGNOSTIC, 9, -9.130831927174e-01, 1.797693134862e+308, 7.0395e+02, 4.4344e+01, + 1DIAGNOSTIC, 10, -9.141759873191e-01, 7.409368141940e-04, 7.4841e+02, 4.4467e+01, + 1DIAGNOSTIC, 11, -9.151883617710e-01, 6.752865920770e-04, 7.9296e+02, 4.4550e+01, + 1DIAGNOSTIC, 12, -9.160321178606e-01, 6.031799979063e-04, 8.3732e+02, 4.4356e+01, + 1DIAGNOSTIC, 13, -9.169273714075e-01, 5.384349179982e-04, 8.8183e+02, 4.4505e+01, + 1DIAGNOSTIC, 14, -9.176687408989e-01, 4.766705205491e-04, 9.2644e+02, 4.4616e+01, + 1DIAGNOSTIC, 15, -9.183527462739e-01, 4.176322374975e-04, 9.7099e+02, 4.4547e+01, + 1DIAGNOSTIC, 16, -9.188517484246e-01, 3.606084850016e-04, 1.0162e+03, 4.5178e+01, + 1DIAGNOSTIC, 17, -9.193770390102e-01, 3.086069172777e-04, 1.0608e+03, 4.4683e+01, + 1DIAGNOSTIC, 18, -9.197384514046e-01, 2.608237822803e-04, 1.1058e+03, 4.4925e+01, + 1DIAGNOSTIC, 19, -9.200624611146e-01, 2.182412910777e-04, 1.1502e+03, 4.4470e+01, + 1DIAGNOSTIC, 20, -9.203478058762e-01, 1.810034096299e-04, 1.1948e+03, 4.4587e+01, + Elapsed time (stage 2): 1195 + + +Total elapsed time: 1262 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:10 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:10 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:13 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:17 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:20 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 11306 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:20 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:23 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:23 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 11353 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:23 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:26 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 11410 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:27 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 11415 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:27 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:01 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:02 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:02 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:03 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:04 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:06 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:06 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:07 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:08 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:10 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:10 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:10 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:10 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:11 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:11 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:11 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC001 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:32 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC001 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:32 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC001 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:32 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC001 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:33 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12421 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:35 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:35 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12462 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:36 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:36 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC001_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 90.217 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/logs/proc_func_18-03-2024-10150.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:42 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC001 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/QC/sub-PNC001_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC001* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 90.250 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC001_ses-03 +========================reprocessing without filter=================== +sub-PNC002_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC002 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC002 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC002 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC002 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:58 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:58 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:01:05 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:03:10 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:03:24 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.60 (mm) at sub-brick 0 +++ Max delta displ in automask = 0.35 (mm) at sub-brick 170 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:16:22 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:16:40 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:18:50 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:21:00 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:23:14 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.063 -3.485 2.889 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = 0.114 -6.442 5.377 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.8 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:27:59 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:28:27 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x56456e9336f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.8983, 1.9] + Origin: [110.102, 43.5788, -137.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.8983 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56456e7aa730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56456e94a320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x56456e936fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [77.8093, 111.5, -144.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56456e93ce10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56456f147230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x56456f1455c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.8983, 1.9] + Origin: [110.102, 43.5788, -137.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.8983 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56456e9393f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56456fc71450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x56456f143da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [77.8093, 111.5, -144.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56456e940360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56457046b780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.760778033437e-01, 1.797693134862e+308, 4.3955e-02, 4.3955e-02, + 2DIAGNOSTIC, 2, -6.771459668956e-01, 1.797693134862e+308, 4.5247e-02, 1.2920e-03, + 2DIAGNOSTIC, 3, -6.803471601733e-01, 1.797693134862e+308, 4.6518e-02, 1.2710e-03, + 2DIAGNOSTIC, 4, -6.938986899023e-01, 1.797693134862e+308, 4.8140e-02, 1.6220e-03, + 2DIAGNOSTIC, 5, -7.102924800985e-01, 1.797693134862e+308, 4.9771e-02, 1.6310e-03, + 2DIAGNOSTIC, 6, -7.116123628713e-01, 1.797693134862e+308, 5.1395e-02, 1.6239e-03, + 2DIAGNOSTIC, 7, -7.149203339307e-01, 1.797693134862e+308, 5.4002e-02, 2.6069e-03, + 2DIAGNOSTIC, 8, -7.180281743584e-01, 1.797693134862e+308, 5.5938e-02, 1.9360e-03, + 2DIAGNOSTIC, 9, -7.182453512936e-01, 1.797693134862e+308, 5.7461e-02, 1.5230e-03, + 2DIAGNOSTIC, 10, -7.190310609972e-01, 4.673366001767e-03, 5.9343e-02, 1.8821e-03, + 2DIAGNOSTIC, 11, -7.210624019956e-01, 3.636509743172e-03, 6.0856e-02, 1.5130e-03, + 2DIAGNOSTIC, 12, -7.223712293133e-01, 2.538115221954e-03, 6.2373e-02, 1.5168e-03, + 2DIAGNOSTIC, 13, -7.230217290598e-01, 1.495776477313e-03, 6.3898e-02, 1.5249e-03, + 2DIAGNOSTIC, 14, -7.251599163506e-01, 9.088124947253e-04, 6.5380e-02, 1.4820e-03, + 2DIAGNOSTIC, 15, -7.476158398452e-01, 1.354437414880e-03, 6.7110e-02, 1.7300e-03, + 2DIAGNOSTIC, 16, -7.497794077624e-01, 1.687032932471e-03, 6.8810e-02, 1.7009e-03, + 2DIAGNOSTIC, 17, -7.553020755212e-01, 2.032664946580e-03, 7.1034e-02, 2.2240e-03, + 2DIAGNOSTIC, 18, -7.620592632145e-01, 2.372060233488e-03, 7.3236e-02, 2.2020e-03, + 2DIAGNOSTIC, 19, -7.651980461514e-01, 2.519859646256e-03, 7.4795e-02, 1.5590e-03, + 2DIAGNOSTIC, 20, -7.735533379991e-01, 2.590164122260e-03, 7.6485e-02, 1.6899e-03, + 2DIAGNOSTIC, 21, -7.768005561969e-01, 2.506661001479e-03, 7.7952e-02, 1.4670e-03, + 2DIAGNOSTIC, 22, -7.782664681387e-01, 2.252553994318e-03, 7.9676e-02, 1.7240e-03, + 2DIAGNOSTIC, 23, -7.789295925192e-01, 1.838081035840e-03, 8.1153e-02, 1.4770e-03, + 2DIAGNOSTIC, 24, -7.800606162339e-01, 1.331950683314e-03, 8.3549e-02, 2.3959e-03, + 2DIAGNOSTIC, 25, -7.808150782065e-01, 1.102700318524e-03, 8.5021e-02, 1.4720e-03, + 2DIAGNOSTIC, 26, -7.812601001445e-01, 8.258335611603e-04, 8.6460e-02, 1.4391e-03, + 2DIAGNOSTIC, 27, -7.814065703060e-01, 5.734324904516e-04, 8.7928e-02, 1.4679e-03, + 2DIAGNOSTIC, 28, -7.815588918612e-01, 3.818470441853e-04, 8.9412e-02, 1.4839e-03, + 2DIAGNOSTIC, 29, -7.805234623640e-01, 1.935576760381e-04, 9.1368e-02, 1.9560e-03, + 2DIAGNOSTIC, 30, -7.819186814238e-01, 1.241348608804e-04, 9.3317e-02, 1.9491e-03, + 2DIAGNOSTIC, 31, -7.819610343824e-01, 8.741974811483e-05, 9.4801e-02, 1.4839e-03, + 2DIAGNOSTIC, 32, -7.824956339246e-01, 6.881411506712e-05, 9.6534e-02, 1.7328e-03, + 2DIAGNOSTIC, 33, -7.813803798257e-01, 3.967013088785e-05, 9.8020e-02, 1.4861e-03, + 2DIAGNOSTIC, 34, -7.814445775950e-01, 2.244324198834e-05, 9.9534e-02, 1.5140e-03, + 2DIAGNOSTIC, 35, -7.829141320740e-01, 2.797592796006e-05, 1.0173e-01, 2.1949e-03, + 2DIAGNOSTIC, 36, -7.818105324542e-01, 2.276557927756e-05, 1.0321e-01, 1.4811e-03, + 2DIAGNOSTIC, 37, -7.819059995005e-01, 1.877616104405e-05, 1.0516e-01, 1.9529e-03, + 2DIAGNOSTIC, 38, -7.820494740773e-01, 1.696630504154e-05, 1.0690e-01, 1.7359e-03, + 2DIAGNOSTIC, 39, -7.823060374009e-01, 5.641543481701e-06, 1.0888e-01, 1.9808e-03, + 2DIAGNOSTIC, 40, -7.823343049113e-01, 7.538036131249e-06, 1.1060e-01, 1.7211e-03, + 2DIAGNOSTIC, 41, -7.823396961842e-01, 9.042518554745e-06, 1.1213e-01, 1.5271e-03, + 2DIAGNOSTIC, 42, -7.823416755193e-01, 1.507160581993e-05, 1.1358e-01, 1.4489e-03, + 2DIAGNOSTIC, 43, -7.823548937471e-01, 9.742023419603e-06, 1.1506e-01, 1.4861e-03, + 2DIAGNOSTIC, 44, -7.823919505120e-01, 4.166666449659e-06, 1.1794e-01, 2.8791e-03, + 2DIAGNOSTIC, 45, -7.823939064302e-01, 1.109665651752e-05, 1.1990e-01, 1.9550e-03, + 2DIAGNOSTIC, 46, -7.823939836565e-01, 7.735755113723e-06, 1.2159e-01, 1.6968e-03, + 2DIAGNOSTIC, 47, -7.823940261652e-01, 4.614129169925e-06, 1.2332e-01, 1.7281e-03, + 2DIAGNOSTIC, 48, -7.823940901536e-01, 2.317842829357e-06, 1.2478e-01, 1.4610e-03, + 2DIAGNOSTIC, 49, -7.823943345253e-01, 1.917096404604e-06, 1.2625e-01, 1.4670e-03, + 2DIAGNOSTIC, 50, -7.823953737723e-01, 1.632462822060e-06, 1.2770e-01, 1.4482e-03, + 2DIAGNOSTIC, 51, -7.823985627712e-01, 1.333768249030e-06, 1.2914e-01, 1.4460e-03, + 2DIAGNOSTIC, 52, -7.824053086761e-01, 1.043693245727e-06, 1.3061e-01, 1.4689e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.768371746648e-01, 1.797693134862e+308, 1.7762e-01, 4.7007e-02, + 2DIAGNOSTIC, 2, -3.757914997991e-01, 1.797693134862e+308, 1.8046e-01, 2.8360e-03, + 2DIAGNOSTIC, 3, -3.761686490976e-01, 1.797693134862e+308, 1.8325e-01, 2.7912e-03, + 2DIAGNOSTIC, 4, -3.765740656842e-01, 1.797693134862e+308, 1.8619e-01, 2.9440e-03, + 2DIAGNOSTIC, 5, -3.770619383515e-01, 1.797693134862e+308, 1.8846e-01, 2.2671e-03, + 2DIAGNOSTIC, 6, -3.773960440251e-01, 1.797693134862e+308, 1.9058e-01, 2.1181e-03, + 2DIAGNOSTIC, 7, -3.791407486609e-01, 1.797693134862e+308, 1.9278e-01, 2.2058e-03, + 2DIAGNOSTIC, 8, -3.833517040501e-01, 1.797693134862e+308, 1.9604e-01, 3.2570e-03, + 2DIAGNOSTIC, 9, -3.839615922977e-01, 1.797693134862e+308, 1.9891e-01, 2.8691e-03, + 2DIAGNOSTIC, 10, -3.846061647198e-01, 1.592844775775e-03, 2.0126e-01, 2.3549e-03, + 2DIAGNOSTIC, 11, -3.884828096541e-01, 1.939182611243e-03, 2.0366e-01, 2.3930e-03, + 2DIAGNOSTIC, 12, -3.936456156630e-01, 2.298312610201e-03, 2.0600e-01, 2.3479e-03, + 2DIAGNOSTIC, 13, -3.979477813024e-01, 2.649465686861e-03, 2.0869e-01, 2.6851e-03, + 2DIAGNOSTIC, 14, -3.991754946196e-01, 2.794243535124e-03, 2.1142e-01, 2.7280e-03, + 2DIAGNOSTIC, 15, -4.010747818052e-01, 2.789015208112e-03, 2.1373e-01, 2.3160e-03, + 2DIAGNOSTIC, 16, -4.100913554585e-01, 2.953699771723e-03, 2.1621e-01, 2.4772e-03, + 2DIAGNOSTIC, 17, -4.289822198486e-01, 3.687523007189e-03, 2.1872e-01, 2.5051e-03, + 2DIAGNOSTIC, 18, -4.940654496093e-01, 6.711048573254e-03, 2.2150e-01, 2.7869e-03, + 2DIAGNOSTIC, 19, -5.362638583981e-01, 1.021913467444e-02, 2.2437e-01, 2.8720e-03, + 2DIAGNOSTIC, 20, -5.658461137834e-01, 1.332986998397e-02, 2.2751e-01, 3.1400e-03, + 2DIAGNOSTIC, 21, -5.807281354739e-01, 1.541480012129e-02, 2.3006e-01, 2.5420e-03, + 2DIAGNOSTIC, 22, -6.209375150702e-01, 1.712832444659e-02, 2.3250e-01, 2.4478e-03, + 2DIAGNOSTIC, 23, -6.246895729749e-01, 1.723231792658e-02, 2.3564e-01, 3.1362e-03, + 2DIAGNOSTIC, 24, -6.298686675676e-01, 1.589834471712e-02, 2.3894e-01, 3.3021e-03, + 2DIAGNOSTIC, 25, -6.325367399515e-01, 1.337866442995e-02, 2.4281e-01, 3.8722e-03, + 2DIAGNOSTIC, 26, -6.327940642800e-01, 1.011898003447e-02, 2.4509e-01, 2.2759e-03, + 2DIAGNOSTIC, 27, -6.331012434091e-01, 6.647924842994e-03, 2.4773e-01, 2.6369e-03, + 2DIAGNOSTIC, 28, -6.332904270830e-01, 4.279614109740e-03, 2.5011e-01, 2.3861e-03, + 2DIAGNOSTIC, 29, -6.334627791882e-01, 2.597270195299e-03, 2.5238e-01, 2.2709e-03, + 2DIAGNOSTIC, 30, -6.333593709166e-01, 1.399989988911e-03, 2.5468e-01, 2.2941e-03, + 2DIAGNOSTIC, 31, -6.334721300408e-01, 4.350370997198e-04, 2.5725e-01, 2.5711e-03, + 2DIAGNOSTIC, 32, -6.337347508340e-01, 2.382468130756e-04, 2.6014e-01, 2.8908e-03, + 2DIAGNOSTIC, 33, -6.338558604238e-01, 9.952418723154e-05, 2.6276e-01, 2.6240e-03, + 2DIAGNOSTIC, 34, -6.337951500007e-01, 4.631059794603e-05, 2.6505e-01, 2.2891e-03, + 2DIAGNOSTIC, 35, -6.337460073364e-01, 3.500945708647e-05, 2.6735e-01, 2.2931e-03, + 2DIAGNOSTIC, 36, -6.337727615352e-01, 2.566003433972e-05, 2.6964e-01, 2.2912e-03, + 2DIAGNOSTIC, 37, -6.338088116519e-01, 1.958745734936e-05, 2.7222e-01, 2.5799e-03, + 2DIAGNOSTIC, 38, -6.338527092003e-01, 1.542179336275e-05, 2.7455e-01, 2.3339e-03, + 2DIAGNOSTIC, 39, -6.335953140191e-01, 9.082929393230e-06, 2.7684e-01, 2.2910e-03, + 2DIAGNOSTIC, 40, -6.336892404018e-01, 2.389038646751e-06, 2.8006e-01, 3.2170e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.699857512081e-01, 1.797693134862e+308, 3.4919e-01, 6.9135e-02, + 2DIAGNOSTIC, 2, -4.704965054798e-01, 1.797693134862e+308, 3.6126e-01, 1.2066e-02, + 2DIAGNOSTIC, 3, -4.714984290956e-01, 1.797693134862e+308, 3.7318e-01, 1.1920e-02, + 2DIAGNOSTIC, 4, -4.734928212551e-01, 1.797693134862e+308, 3.8537e-01, 1.2193e-02, + 2DIAGNOSTIC, 5, -4.758601991558e-01, 1.797693134862e+308, 3.9814e-01, 1.2771e-02, + 2DIAGNOSTIC, 6, -4.777049475178e-01, 1.797693134862e+308, 4.1174e-01, 1.3592e-02, + 2DIAGNOSTIC, 7, -4.808881233556e-01, 1.797693134862e+308, 4.2675e-01, 1.5013e-02, + 2DIAGNOSTIC, 8, -4.825298379574e-01, 1.797693134862e+308, 4.4649e-01, 1.9743e-02, + 2DIAGNOSTIC, 9, -4.826174951460e-01, 1.797693134862e+308, 4.6008e-01, 1.3583e-02, + 2DIAGNOSTIC, 10, -4.828490801635e-01, 2.086807296251e-03, 4.7211e-01, 1.2033e-02, + 2DIAGNOSTIC, 11, -4.830601929964e-01, 1.763369128692e-03, 4.8398e-01, 1.1872e-02, + 2DIAGNOSTIC, 12, -4.834252774678e-01, 1.378338081916e-03, 4.9683e-01, 1.2847e-02, + 2DIAGNOSTIC, 13, -4.835069661030e-01, 9.766466312966e-04, 5.0803e-01, 1.1201e-02, + 2DIAGNOSTIC, 14, -4.835390059620e-01, 6.305816612186e-04, 5.1896e-01, 1.0929e-02, + 2DIAGNOSTIC, 15, -4.838015410087e-01, 3.783144788868e-04, 5.3291e-01, 1.3949e-02, + 2DIAGNOSTIC, 16, -4.838839134457e-01, 1.917907318935e-04, 5.4539e-01, 1.2487e-02, + 2DIAGNOSTIC, 17, -4.839128577863e-01, 1.202383600452e-04, 5.5806e-01, 1.2668e-02, + 2DIAGNOSTIC, 18, -4.839541294870e-01, 1.013304916824e-04, 5.7203e-01, 1.3964e-02, + 2DIAGNOSTIC, 19, -4.840214266771e-01, 8.005274546564e-05, 5.8854e-01, 1.6518e-02, + 2DIAGNOSTIC, 20, -4.840194315699e-01, 6.025247054754e-05, 5.9935e-01, 1.0805e-02, + 2DIAGNOSTIC, 21, -4.840526705398e-01, 4.349453584605e-05, 6.1081e-01, 1.1458e-02, + 2DIAGNOSTIC, 22, -4.840733712662e-01, 3.476392637791e-05, 6.2163e-01, 1.0826e-02, + 2DIAGNOSTIC, 23, -4.840959332130e-01, 2.642123380906e-05, 6.3521e-01, 1.3578e-02, + 2DIAGNOSTIC, 24, -4.840987862750e-01, 1.711482268764e-05, 6.4843e-01, 1.3222e-02, + 2DIAGNOSTIC, 25, -4.840966416448e-01, 1.320297708236e-05, 6.5889e-01, 1.0454e-02, + 2DIAGNOSTIC, 26, -4.840964688714e-01, 1.035393578792e-05, 6.6921e-01, 1.0323e-02, + 2DIAGNOSTIC, 27, -4.841125425012e-01, 7.822198415275e-06, 6.8091e-01, 1.1698e-02, + 2DIAGNOSTIC, 28, -4.841163348956e-01, 5.746586071886e-06, 6.9420e-01, 1.3291e-02, + 2DIAGNOSTIC, 29, -4.841162620546e-01, 4.763945785226e-06, 7.0763e-01, 1.3429e-02, + 2DIAGNOSTIC, 30, -4.841091866774e-01, 3.322625637785e-06, 7.1947e-01, 1.1847e-02, + 2DIAGNOSTIC, 31, -4.841060030602e-01, 2.332169252488e-06, 7.3009e-01, 1.0618e-02, + 2DIAGNOSTIC, 32, -4.841039296358e-01, 1.607040902143e-06, 7.4069e-01, 1.0594e-02, + 2DIAGNOSTIC, 33, -4.841086150750e-01, 1.349621185982e-06, 7.5186e-01, 1.1169e-02, + 2DIAGNOSTIC, 34, -4.841214401617e-01, 1.345387895042e-06, 7.6395e-01, 1.2097e-02, + 2DIAGNOSTIC, 35, -4.841329941121e-01, 1.462236248487e-06, 7.7449e-01, 1.0540e-02, + 2DIAGNOSTIC, 36, -4.841573390408e-01, 1.909261386122e-06, 7.8476e-01, 1.0264e-02, + 2DIAGNOSTIC, 37, -4.842050411100e-01, 3.242393696815e-06, 7.9658e-01, 1.1826e-02, + 2DIAGNOSTIC, 38, -4.842587214377e-01, 5.152473933057e-06, 8.0744e-01, 1.0858e-02, + 2DIAGNOSTIC, 39, -4.842822874332e-01, 6.897615434116e-06, 8.1772e-01, 1.0280e-02, + 2DIAGNOSTIC, 40, -4.844727568624e-01, 1.068584450894e-05, 8.3355e-01, 1.5828e-02, + 2DIAGNOSTIC, 41, -4.844953061828e-01, 1.355728637089e-05, 8.4362e-01, 1.0071e-02, + 2DIAGNOSTIC, 42, -4.845033733386e-01, 1.517151602686e-05, 8.5637e-01, 1.2755e-02, + 2DIAGNOSTIC, 43, -4.845276659092e-01, 1.576003560496e-05, 8.6996e-01, 1.3590e-02, + 2DIAGNOSTIC, 44, -4.845052687165e-01, 1.474738504396e-05, 8.8143e-01, 1.1466e-02, + 2DIAGNOSTIC, 45, -4.845331061022e-01, 1.293414731894e-05, 8.9291e-01, 1.1475e-02, + 2DIAGNOSTIC, 46, -4.845338178471e-01, 1.032400104694e-05, 9.0297e-01, 1.0065e-02, + 2DIAGNOSTIC, 47, -4.845372598030e-01, 7.563154499270e-06, 9.1327e-01, 1.0300e-02, + 2DIAGNOSTIC, 48, -4.845513375540e-01, 5.114417982718e-06, 9.2481e-01, 1.1540e-02, + 2DIAGNOSTIC, 49, -4.845556626126e-01, 2.612132420719e-06, 9.3479e-01, 9.9781e-03, + 2DIAGNOSTIC, 50, -4.845738103423e-01, 2.474068478472e-06, 9.4618e-01, 1.1395e-02, + 2DIAGNOSTIC, 51, -4.846012876004e-01, 2.735236031341e-06, 9.5741e-01, 1.1222e-02, + 2DIAGNOSTIC, 52, -4.846255803403e-01, 3.137648603723e-06, 9.7001e-01, 1.2605e-02, + 2DIAGNOSTIC, 53, -4.846131598500e-01, 3.421803065208e-06, 9.7992e-01, 9.9092e-03, + 2DIAGNOSTIC, 54, -4.846230768674e-01, 3.290519904848e-06, 9.9122e-01, 1.1305e-02, + 2DIAGNOSTIC, 55, -4.846154897280e-01, 3.119272365702e-06, 1.0036e+00, 1.2405e-02, + 2DIAGNOSTIC, 56, -4.845948448071e-01, 2.497134279154e-06, 1.0169e+00, 1.3298e-02, + 2DIAGNOSTIC, 57, -4.846022659034e-01, 1.825319084024e-06, 1.0273e+00, 1.0411e-02, + 2DIAGNOSTIC, 58, -4.846054008718e-01, 1.230175279830e-06, 1.0377e+00, 1.0370e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.016572278737e-01, 1.797693134862e+308, 1.2454e+00, 2.0774e-01, + Elapsed time (stage 0): 1.2745e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.806174515464e-01, 1.797693134862e+308, 3.7806e-02, 3.7806e-02, + 2DIAGNOSTIC, 2, -9.841347753939e-01, 1.797693134862e+308, 3.9242e-02, 1.4360e-03, + 2DIAGNOSTIC, 3, -9.895544472682e-01, 1.797693134862e+308, 4.0626e-02, 1.3840e-03, + 2DIAGNOSTIC, 4, -9.955238024179e-01, 1.797693134862e+308, 4.1770e-02, 1.1439e-03, + 2DIAGNOSTIC, 5, -1.001057257953e+00, 1.797693134862e+308, 4.2916e-02, 1.1461e-03, + 2DIAGNOSTIC, 6, -1.008836417613e+00, 1.797693134862e+308, 4.4079e-02, 1.1630e-03, + 2DIAGNOSTIC, 7, -1.020080253079e+00, 1.797693134862e+308, 4.5657e-02, 1.5781e-03, + 2DIAGNOSTIC, 8, -1.027175042731e+00, 1.797693134862e+308, 4.6786e-02, 1.1292e-03, + 2DIAGNOSTIC, 9, -1.028870439718e+00, 1.797693134862e+308, 4.8355e-02, 1.5690e-03, + 2DIAGNOSTIC, 10, -1.028780978477e+00, 3.572773218366e-03, 4.9882e-02, 1.5271e-03, + 2DIAGNOSTIC, 11, -1.028149464137e+00, 2.968485399019e-03, 5.1475e-02, 1.5922e-03, + 2DIAGNOSTIC, 12, -1.027185520937e+00, 2.256743312226e-03, 5.2853e-02, 1.3781e-03, + 2DIAGNOSTIC, 13, -1.026383347748e+00, 1.550124431195e-03, 5.4198e-02, 1.3449e-03, + 2DIAGNOSTIC, 14, -1.027053287499e+00, 9.398224845432e-04, 5.5539e-02, 1.3411e-03, + 2DIAGNOSTIC, 15, -1.027903805297e+00, 4.454728500529e-04, 5.6883e-02, 1.3440e-03, + 2DIAGNOSTIC, 16, -1.029118507126e+00, 1.266970561310e-04, 5.8407e-02, 1.5240e-03, + 2DIAGNOSTIC, 17, -1.030281004939e+00, 3.585241229674e-05, 6.0179e-02, 1.7729e-03, + 2DIAGNOSTIC, 18, -1.030750538174e+00, 6.886311412859e-05, 6.1875e-02, 1.6959e-03, + 2DIAGNOSTIC, 19, -1.030968846101e+00, 1.201135652543e-04, 6.3449e-02, 1.5738e-03, + 2DIAGNOSTIC, 20, -1.031341102263e+00, 1.589863591317e-04, 6.5063e-02, 1.6139e-03, + 2DIAGNOSTIC, 21, -1.031946255380e+00, 1.791089587617e-04, 6.6409e-02, 1.3459e-03, + 2DIAGNOSTIC, 22, -1.032409881669e+00, 1.745857819087e-04, 6.7993e-02, 1.5841e-03, + 2DIAGNOSTIC, 23, -1.031252902214e+00, 1.305092131443e-04, 6.9817e-02, 1.8241e-03, + 2DIAGNOSTIC, 24, -1.030116782871e+00, 7.323192345022e-05, 7.1408e-02, 1.5910e-03, + 2DIAGNOSTIC, 25, -1.031560027471e+00, 3.942472326101e-05, 7.2935e-02, 1.5271e-03, + 2DIAGNOSTIC, 26, -1.032701654045e+00, 2.869726657172e-05, 7.4275e-02, 1.3399e-03, + 2DIAGNOSTIC, 27, -1.033347483551e+00, 3.436745389872e-05, 7.6131e-02, 1.8561e-03, + 2DIAGNOSTIC, 28, -1.034807283124e+00, 5.614847455941e-05, 7.7748e-02, 1.6170e-03, + 2DIAGNOSTIC, 29, -1.035411022536e+00, 7.916183032684e-05, 7.9966e-02, 2.2180e-03, + 2DIAGNOSTIC, 30, -1.031872096145e+00, 6.351212770420e-05, 8.1930e-02, 1.9639e-03, + 2DIAGNOSTIC, 31, -1.034636819785e+00, 7.369916409511e-05, 8.5072e-02, 3.1419e-03, + 2DIAGNOSTIC, 32, -1.035104812564e+00, 8.366661721406e-05, 8.7000e-02, 1.9281e-03, + 2DIAGNOSTIC, 33, -1.036754650807e+00, 8.933947416490e-05, 8.8980e-02, 1.9801e-03, + 2DIAGNOSTIC, 34, -1.038037987127e+00, 8.735648754928e-05, 9.0585e-02, 1.6050e-03, + 2DIAGNOSTIC, 35, -1.036311702542e+00, 7.533226869794e-05, 9.2188e-02, 1.6029e-03, + 2DIAGNOSTIC, 36, -1.036052968229e+00, 6.421566312028e-05, 9.3751e-02, 1.5631e-03, + 2DIAGNOSTIC, 37, -1.036627249593e+00, 5.600352287865e-05, 9.5306e-02, 1.5550e-03, + 2DIAGNOSTIC, 38, -1.036766535921e+00, 5.393362014870e-05, 9.6907e-02, 1.6010e-03, + 2DIAGNOSTIC, 39, -1.042149656978e+00, 9.028197894600e-05, 9.8276e-02, 1.3690e-03, + 2DIAGNOSTIC, 40, -1.067367201045e+00, 2.650271058692e-04, 9.9822e-02, 1.5459e-03, + 2DIAGNOSTIC, 41, -1.083925662903e+00, 5.316553475302e-04, 1.0116e-01, 1.3342e-03, + 2DIAGNOSTIC, 42, -1.103830207526e+00, 8.667800100029e-04, 1.0334e-01, 2.1799e-03, + 2DIAGNOSTIC, 43, -1.106315175270e+00, 1.128761728379e-03, 1.0471e-01, 1.3721e-03, + 2DIAGNOSTIC, 44, -1.111209280115e+00, 1.310734680708e-03, 1.0605e-01, 1.3461e-03, + 2DIAGNOSTIC, 45, -1.115241272207e+00, 1.371204805808e-03, 1.0782e-01, 1.7679e-03, + 2DIAGNOSTIC, 46, -1.116027221023e+00, 1.298715020265e-03, 1.0918e-01, 1.3590e-03, + 2DIAGNOSTIC, 47, -1.114469126038e+00, 1.100782375779e-03, 1.1054e-01, 1.3571e-03, + 2DIAGNOSTIC, 48, -1.115110952287e+00, 8.132169589706e-04, 1.1191e-01, 1.3750e-03, + 2DIAGNOSTIC, 49, -1.114933354115e+00, 4.876101023379e-04, 1.1354e-01, 1.6251e-03, + 2DIAGNOSTIC, 50, -1.114673413210e+00, 2.636468664886e-04, 1.1490e-01, 1.3599e-03, + 2DIAGNOSTIC, 51, -1.114734805926e+00, 1.100127799675e-04, 1.1696e-01, 2.0571e-03, + 2DIAGNOSTIC, 52, -1.114282650484e+00, 5.416686549882e-05, 1.1852e-01, 1.5681e-03, + 2DIAGNOSTIC, 53, -1.113979369375e+00, 6.224087588182e-06, 1.1989e-01, 1.3640e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.442370877551e-01, 1.797693134862e+308, 1.6021e-01, 4.0319e-02, + 2DIAGNOSTIC, 2, -7.446342731043e-01, 1.797693134862e+308, 1.6296e-01, 2.7490e-03, + 2DIAGNOSTIC, 3, -7.463827340681e-01, 1.797693134862e+308, 1.6569e-01, 2.7339e-03, + 2DIAGNOSTIC, 4, -7.488296261004e-01, 1.797693134862e+308, 1.6830e-01, 2.6121e-03, + 2DIAGNOSTIC, 5, -7.513196095666e-01, 1.797693134862e+308, 1.7052e-01, 2.2190e-03, + 2DIAGNOSTIC, 6, -7.535514897830e-01, 1.797693134862e+308, 1.7281e-01, 2.2860e-03, + 2DIAGNOSTIC, 7, -7.554843630053e-01, 1.797693134862e+308, 1.7537e-01, 2.5630e-03, + 2DIAGNOSTIC, 8, -7.573485488608e-01, 1.797693134862e+308, 1.7870e-01, 3.3259e-03, + 2DIAGNOSTIC, 9, -7.578758502579e-01, 1.797693134862e+308, 1.8126e-01, 2.5680e-03, + 2DIAGNOSTIC, 10, -7.582079468003e-01, 1.391128581580e-03, 1.8409e-01, 2.8238e-03, + 2DIAGNOSTIC, 11, -7.586493259671e-01, 1.164631655321e-03, 1.8697e-01, 2.8851e-03, + 2DIAGNOSTIC, 12, -7.592040415046e-01, 9.010826089112e-04, 1.8981e-01, 2.8350e-03, + 2DIAGNOSTIC, 13, -7.597574278927e-01, 6.626359285087e-04, 1.9326e-01, 3.4530e-03, + 2DIAGNOSTIC, 14, -7.609326682823e-01, 4.951982561795e-04, 1.9568e-01, 2.4211e-03, + 2DIAGNOSTIC, 15, -7.614801973377e-01, 3.806251451565e-04, 1.9904e-01, 3.3622e-03, + 2DIAGNOSTIC, 16, -7.619627974961e-01, 3.090144806561e-04, 2.0177e-01, 2.7301e-03, + 2DIAGNOSTIC, 17, -7.623143102725e-01, 2.672547689156e-04, 2.0477e-01, 2.9922e-03, + 2DIAGNOSTIC, 18, -7.624100544095e-01, 2.463003380195e-04, 2.0781e-01, 3.0441e-03, + 2DIAGNOSTIC, 19, -7.624034837773e-01, 2.150297837496e-04, 2.1038e-01, 2.5690e-03, + 2DIAGNOSTIC, 20, -7.623559904794e-01, 1.723408399422e-04, 2.1267e-01, 2.2919e-03, + 2DIAGNOSTIC, 21, -7.623777055150e-01, 1.261522782367e-04, 2.1526e-01, 2.5911e-03, + 2DIAGNOSTIC, 22, -7.624180759494e-01, 8.267830327312e-05, 2.1761e-01, 2.3501e-03, + 2DIAGNOSTIC, 23, -7.624338502021e-01, 4.431272431180e-05, 2.1995e-01, 2.3391e-03, + 2DIAGNOSTIC, 24, -7.625281286153e-01, 2.493065339464e-05, 2.2230e-01, 2.3441e-03, + 2DIAGNOSTIC, 25, -7.627164885492e-01, 1.579810214884e-05, 2.2496e-01, 2.6650e-03, + 2DIAGNOSTIC, 26, -7.628321669690e-01, 1.444385490207e-05, 2.2763e-01, 2.6681e-03, + 2DIAGNOSTIC, 27, -7.628745870337e-01, 1.736190267821e-05, 2.3028e-01, 2.6472e-03, + 2DIAGNOSTIC, 28, -7.629094427510e-01, 2.032583822673e-05, 2.3265e-01, 2.3780e-03, + 2DIAGNOSTIC, 29, -7.629217245977e-01, 2.136374163810e-05, 2.3501e-01, 2.3520e-03, + 2DIAGNOSTIC, 30, -7.630931647172e-01, 2.192593944126e-05, 2.3736e-01, 2.3520e-03, + 2DIAGNOSTIC, 31, -7.633182974586e-01, 2.338229398872e-05, 2.3999e-01, 2.6309e-03, + 2DIAGNOSTIC, 32, -7.636618170535e-01, 2.710226149281e-05, 2.4259e-01, 2.5990e-03, + 2DIAGNOSTIC, 33, -7.636770326139e-01, 2.843015447899e-05, 2.4646e-01, 3.8688e-03, + 2DIAGNOSTIC, 34, -7.637231131091e-01, 2.865217562040e-05, 2.4909e-01, 2.6350e-03, + 2DIAGNOSTIC, 35, -7.637304582000e-01, 2.830512103209e-05, 2.5143e-01, 2.3432e-03, + 2DIAGNOSTIC, 36, -7.636996523187e-01, 2.619577292982e-05, 2.5375e-01, 2.3201e-03, + 2DIAGNOSTIC, 37, -7.637221491602e-01, 2.241877032311e-05, 2.5608e-01, 2.3251e-03, + 2DIAGNOSTIC, 38, -7.637816338831e-01, 1.774516182262e-05, 2.5873e-01, 2.6541e-03, + 2DIAGNOSTIC, 39, -7.637408199762e-01, 1.143387117430e-05, 2.6139e-01, 2.6529e-03, + 2DIAGNOSTIC, 40, -7.639643912549e-01, 8.121323191473e-06, 2.6466e-01, 3.2711e-03, + 2DIAGNOSTIC, 41, -7.640952382233e-01, 7.388080008268e-06, 2.6698e-01, 2.3270e-03, + 2DIAGNOSTIC, 42, -7.642753874161e-01, 1.070384871752e-05, 2.6936e-01, 2.3758e-03, + 2DIAGNOSTIC, 43, -7.646950893625e-01, 1.667345697097e-05, 2.7262e-01, 3.2630e-03, + 2DIAGNOSTIC, 44, -7.649000811697e-01, 2.291010129803e-05, 2.7496e-01, 2.3370e-03, + 2DIAGNOSTIC, 45, -7.649793138206e-01, 2.746682182773e-05, 2.7823e-01, 3.2721e-03, + 2DIAGNOSTIC, 46, -7.650450253041e-01, 2.956999979070e-05, 2.8203e-01, 3.7980e-03, + 2DIAGNOSTIC, 47, -7.650466858630e-01, 2.900139528630e-05, 2.8441e-01, 2.3839e-03, + 2DIAGNOSTIC, 48, -7.650550972439e-01, 2.626915048547e-05, 2.8683e-01, 2.4130e-03, + 2DIAGNOSTIC, 49, -7.650678657319e-01, 2.093364985557e-05, 2.8958e-01, 2.7559e-03, + 2DIAGNOSTIC, 50, -7.650828667719e-01, 1.567122791261e-05, 2.9200e-01, 2.4159e-03, + 2DIAGNOSTIC, 51, -7.650587007632e-01, 9.968657403776e-06, 2.9440e-01, 2.4009e-03, + 2DIAGNOSTIC, 52, -7.650777687313e-01, 4.967440115758e-06, 2.9684e-01, 2.4390e-03, + 2DIAGNOSTIC, 53, -7.650539472421e-01, 2.494936434484e-06, 2.9931e-01, 2.4731e-03, + 2DIAGNOSTIC, 54, -7.650362875635e-01, 1.219686960631e-06, 3.0175e-01, 2.4359e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.727389112475e-01, 1.797693134862e+308, 3.6243e-01, 6.0677e-02, + 2DIAGNOSTIC, 2, -5.733013485382e-01, 1.797693134862e+308, 3.7569e-01, 1.3264e-02, + 2DIAGNOSTIC, 3, -5.740316541037e-01, 1.797693134862e+308, 3.8759e-01, 1.1903e-02, + 2DIAGNOSTIC, 4, -5.748188632458e-01, 1.797693134862e+308, 3.9976e-01, 1.2172e-02, + 2DIAGNOSTIC, 5, -5.756037512755e-01, 1.797693134862e+308, 4.1142e-01, 1.1652e-02, + 2DIAGNOSTIC, 6, -5.764554471224e-01, 1.797693134862e+308, 4.2329e-01, 1.1871e-02, + 2DIAGNOSTIC, 7, -5.772453572311e-01, 1.797693134862e+308, 4.3685e-01, 1.3562e-02, + 2DIAGNOSTIC, 8, -5.778243967781e-01, 1.797693134862e+308, 4.5476e-01, 1.7910e-02, + 2DIAGNOSTIC, 9, -5.779153277687e-01, 1.797693134862e+308, 4.7015e-01, 1.5395e-02, + 2DIAGNOSTIC, 10, -5.781587811970e-01, 6.639503444897e-04, 4.8332e-01, 1.3170e-02, + 2DIAGNOSTIC, 11, -5.785785741988e-01, 5.511583760285e-04, 4.9611e-01, 1.2783e-02, + 2DIAGNOSTIC, 12, -5.787897485143e-01, 4.388551103815e-04, 5.0812e-01, 1.2012e-02, + 2DIAGNOSTIC, 13, -5.789519216291e-01, 3.380125818317e-04, 5.2232e-01, 1.4200e-02, + 2DIAGNOSTIC, 14, -5.791603813680e-01, 2.562353082248e-04, 5.4090e-01, 1.8581e-02, + 2DIAGNOSTIC, 15, -5.791979272333e-01, 1.888445968901e-04, 5.5339e-01, 1.2487e-02, + 2DIAGNOSTIC, 16, -5.792660091112e-01, 1.405248354614e-04, 5.6545e-01, 1.2063e-02, + 2DIAGNOSTIC, 17, -5.793242015334e-01, 1.092815593590e-04, 5.7758e-01, 1.2125e-02, + 2DIAGNOSTIC, 18, -5.793625011641e-01, 8.855944603425e-05, 5.9109e-01, 1.3519e-02, + 2DIAGNOSTIC, 19, -5.793528097426e-01, 6.403773970338e-05, 6.0778e-01, 1.6689e-02, + 2DIAGNOSTIC, 20, -5.793511844761e-01, 4.196537619143e-05, 6.2732e-01, 1.9537e-02, + 2DIAGNOSTIC, 21, -5.793520360785e-01, 2.805956406288e-05, 6.4141e-01, 1.4087e-02, + 2DIAGNOSTIC, 22, -5.793499322778e-01, 1.755021051774e-05, 6.5701e-01, 1.5604e-02, + 2DIAGNOSTIC, 23, -5.793488302773e-01, 9.785121335197e-06, 6.7048e-01, 1.3472e-02, + 2DIAGNOSTIC, 24, -5.793477278876e-01, 6.146807972486e-06, 6.8244e-01, 1.1957e-02, + 2DIAGNOSTIC, 25, -5.793468783690e-01, 3.058473284544e-06, 6.9485e-01, 1.2405e-02, + 2DIAGNOSTIC, 26, -5.793464085805e-01, 1.293571667040e-06, 7.0807e-01, 1.3228e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.773841771124e-01, 1.797693134862e+308, 8.9994e-01, 1.9187e-01, + Elapsed time (stage 1): 9.2372e-01 + + +Total elapsed time: 2.1993e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:28:31 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 43 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 319 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 85.08% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 85.08% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[11132 16251 15890 6869 22781 5227 1871 3459 3445 2003 1500 197 + 229 520 0 0 0 181 290 206 0 0 286 0 + 0 0 0 214 0 0 0 0 0 0 0 0 + 0 0 0 0 0 0 0] +[129430 88489 89910 52481 68993 32243 42718 37771 20736 26615 + 11125 19180 15746 8420 13618 21563 4881 12750 8580 4153 + 3536 3843 14959 7658 6227 11702 2859 1203 1991 656 + 184 736 827 459 599 573 408 498 672 0 + 205 455 661] +[12085 0 229 0 0 0 0 0 7788 1169 9438 7141 + 0 0 0 226 0 7404 1537 30329 1203 0 0 0 + 0 9175 0 0 277 0 302 0 0 0 349 234 + 0 10073 0 322 821 8727 0] +[ 364 240 9361 8282 10712 1213 1649 4778 84972 12493 + 101979 803 4850 10945 556 5316 2646 68101 10301 866 + 23614 520 1109 1668 619 1760 1210 2337 16110 425 + 4153 1818 605 6826 12887 4350 4288 90410 666 20384 + 23708 89178 864] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:39:17 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:39:22 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:11 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:11 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:21 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:24 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC002 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:37 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:44:02 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:45:50 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:45:51 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:47:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:47:11 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x560bc3b11d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.2584, 111.949, -144.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x560bc3988730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f81af4fd010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x560bc3b15020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 44.028, -137.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x560bc3b1b0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f81abe3e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x560bc3b2b840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.2584, 111.949, -144.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x560bc3b17890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f81a716a010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x560bc3b2f3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 44.028, -137.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x560bc3b1e130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f81a3aab010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.150078067932e-01, 1.797693134862e+308, 2.4088e-01, 2.4088e-01, + 2DIAGNOSTIC, 2, -5.172565042030e-01, 1.797693134862e+308, 2.4233e-01, 1.4460e-03, + 2DIAGNOSTIC, 3, -5.194525519718e-01, 1.797693134862e+308, 2.4374e-01, 1.4160e-03, + 2DIAGNOSTIC, 4, -5.213206352038e-01, 1.797693134862e+308, 2.4511e-01, 1.3630e-03, + 2DIAGNOSTIC, 5, -5.241454755664e-01, 1.797693134862e+308, 2.4650e-01, 1.3981e-03, + 2DIAGNOSTIC, 6, -5.261692676625e-01, 1.797693134862e+308, 2.4807e-01, 1.5709e-03, + 2DIAGNOSTIC, 7, -5.358315070586e-01, 1.797693134862e+308, 2.4967e-01, 1.5960e-03, + 2DIAGNOSTIC, 8, -5.374944302351e-01, 1.797693134862e+308, 2.5136e-01, 1.6940e-03, + 2DIAGNOSTIC, 9, -5.382883167230e-01, 1.797693134862e+308, 2.5315e-01, 1.7910e-03, + 2DIAGNOSTIC, 10, -5.384888187855e-01, 3.324716436465e-03, 2.5496e-01, 1.8070e-03, + 2DIAGNOSTIC, 11, -5.382924641431e-01, 2.810320307256e-03, 2.5662e-01, 1.6601e-03, + 2DIAGNOSTIC, 12, -5.386675099651e-01, 2.242383465411e-03, 2.5830e-01, 1.6809e-03, + 2DIAGNOSTIC, 13, -5.394454495230e-01, 1.681189963355e-03, 2.6069e-01, 2.3909e-03, + 2DIAGNOSTIC, 14, -5.396193946811e-01, 1.129587711604e-03, 2.6234e-01, 1.6510e-03, + 2DIAGNOSTIC, 15, -5.398619280410e-01, 6.624903116010e-04, 2.6396e-01, 1.6189e-03, + 2DIAGNOSTIC, 16, -5.433818428309e-01, 3.713189291425e-04, 2.6562e-01, 1.6589e-03, + 2DIAGNOSTIC, 17, -5.482795998635e-01, 5.334400580359e-04, 2.6754e-01, 1.9140e-03, + 2DIAGNOSTIC, 18, -5.527319394097e-01, 8.046087267521e-04, 2.6922e-01, 1.6811e-03, + 2DIAGNOSTIC, 19, -5.755063380569e-01, 1.626679408633e-03, 2.7119e-01, 1.9760e-03, + 2DIAGNOSTIC, 20, -5.974484909216e-01, 2.775788154465e-03, 2.7334e-01, 2.1460e-03, + 2DIAGNOSTIC, 21, -6.007483404646e-01, 3.614671405910e-03, 2.7598e-01, 2.6369e-03, + 2DIAGNOSTIC, 22, -6.037153781093e-01, 4.121761930968e-03, 2.7786e-01, 1.8828e-03, + 2DIAGNOSTIC, 23, -6.033159270923e-01, 4.209470445448e-03, 2.8390e-01, 6.0420e-03, + 2DIAGNOSTIC, 24, -6.033159218103e-01, 3.894366186830e-03, 2.8551e-01, 1.6091e-03, + 2DIAGNOSTIC, 25, -6.033160256224e-01, 3.239557742092e-03, 2.8717e-01, 1.6551e-03, + 2DIAGNOSTIC, 26, -6.033162011608e-01, 2.408121782679e-03, 2.8878e-01, 1.6119e-03, + 2DIAGNOSTIC, 27, -6.033164979743e-01, 1.518740541713e-03, 2.9044e-01, 1.6601e-03, + 2DIAGNOSTIC, 28, -6.033169998272e-01, 6.302999773028e-04, 2.9204e-01, 1.6069e-03, + 2DIAGNOSTIC, 29, -6.033178482982e-01, 1.384846572751e-04, 2.9368e-01, 1.6379e-03, + 2DIAGNOSTIC, 30, -6.033192826087e-01, 3.873830000577e-05, 2.9532e-01, 1.6370e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.698368728522e-01, 1.797693134862e+308, 5.2446e-01, 2.2914e-01, + 2DIAGNOSTIC, 2, -4.688723095833e-01, 1.797693134862e+308, 5.2655e-01, 2.0881e-03, + 2DIAGNOSTIC, 3, -4.694818927056e-01, 1.797693134862e+308, 5.2841e-01, 1.8620e-03, + 2DIAGNOSTIC, 4, -4.720313142283e-01, 1.797693134862e+308, 5.3035e-01, 1.9469e-03, + 2DIAGNOSTIC, 5, -4.833082629028e-01, 1.797693134862e+308, 5.3293e-01, 2.5771e-03, + 2DIAGNOSTIC, 6, -5.166572343586e-01, 1.797693134862e+308, 5.3693e-01, 4.0028e-03, + 2DIAGNOSTIC, 7, -5.168416162203e-01, 1.797693134862e+308, 5.3881e-01, 1.8730e-03, + 2DIAGNOSTIC, 8, -5.169098690032e-01, 1.797693134862e+308, 5.4069e-01, 1.8849e-03, + 2DIAGNOSTIC, 9, -5.172833965134e-01, 1.797693134862e+308, 5.4260e-01, 1.9121e-03, + 2DIAGNOSTIC, 10, -5.177896093788e-01, 8.615922662468e-03, 5.4477e-01, 2.1632e-03, + 2DIAGNOSTIC, 11, -5.182345392534e-01, 7.231469229254e-03, 5.4691e-01, 2.1439e-03, + 2DIAGNOSTIC, 12, -5.183796748246e-01, 5.405100264343e-03, 5.4962e-01, 2.7089e-03, + 2DIAGNOSTIC, 13, -5.184151393824e-01, 3.438501367431e-03, 5.5175e-01, 2.1269e-03, + 2DIAGNOSTIC, 14, -5.183523176231e-01, 1.554920388265e-03, 5.5417e-01, 2.4209e-03, + 2DIAGNOSTIC, 15, -5.182813155809e-01, 1.750340216998e-04, 5.5626e-01, 2.0902e-03, + 2DIAGNOSTIC, 16, -5.181419315670e-01, 1.277694688036e-04, 5.5875e-01, 2.4941e-03, + 2DIAGNOSTIC, 17, -5.181759647508e-01, 8.218467821719e-05, 5.6116e-01, 2.4099e-03, + 2DIAGNOSTIC, 18, -5.181132613278e-01, 3.449953871472e-05, 5.6367e-01, 2.5120e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.798337703677e-01, 1.797693134862e+308, 8.1226e-01, 2.4858e-01, + 2DIAGNOSTIC, 2, -3.805112857148e-01, 1.797693134862e+308, 8.2435e-01, 1.2094e-02, + 2DIAGNOSTIC, 3, -3.815293987486e-01, 1.797693134862e+308, 8.3640e-01, 1.2044e-02, + 2DIAGNOSTIC, 4, -3.829871529989e-01, 1.797693134862e+308, 8.4832e-01, 1.1924e-02, + 2DIAGNOSTIC, 5, -3.850794511384e-01, 1.797693134862e+308, 8.6027e-01, 1.1952e-02, + 2DIAGNOSTIC, 6, -3.873426294174e-01, 1.797693134862e+308, 8.7263e-01, 1.2356e-02, + 2DIAGNOSTIC, 7, -3.930539077716e-01, 1.797693134862e+308, 8.8470e-01, 1.2070e-02, + 2DIAGNOSTIC, 8, -3.992051079890e-01, 1.797693134862e+308, 8.9851e-01, 1.3811e-02, + 2DIAGNOSTIC, 9, -4.039563260237e-01, 1.797693134862e+308, 9.1220e-01, 1.3690e-02, + 2DIAGNOSTIC, 10, -4.059900743505e-01, 4.676629613338e-03, 9.2850e-01, 1.6301e-02, + 2DIAGNOSTIC, 11, -4.105385770502e-01, 4.859975835250e-03, 9.4395e-01, 1.5450e-02, + 2DIAGNOSTIC, 12, -4.232619388066e-01, 5.361956369718e-03, 9.5808e-01, 1.4129e-02, + 2DIAGNOSTIC, 13, -5.028577275141e-01, 9.573556413022e-03, 9.7475e-01, 1.6670e-02, + 2DIAGNOSTIC, 14, -5.690339761820e-01, 1.526228510323e-02, 9.8726e-01, 1.2513e-02, + 2DIAGNOSTIC, 15, -5.819560448114e-01, 1.917569323080e-02, 1.0019e+00, 1.4617e-02, + 2DIAGNOSTIC, 16, -6.068165883093e-01, 2.180946957339e-02, 1.0203e+00, 1.8460e-02, + 2DIAGNOSTIC, 17, -6.177485723524e-01, 2.264617251567e-02, 1.0350e+00, 1.4636e-02, + 2DIAGNOSTIC, 18, -6.199841689733e-01, 2.154131539711e-02, 1.0477e+00, 1.2706e-02, + 2DIAGNOSTIC, 19, -6.216186182349e-01, 1.880824446250e-02, 1.0621e+00, 1.4375e-02, + 2DIAGNOSTIC, 20, -6.233668716504e-01, 1.485323088821e-02, 1.0806e+00, 1.8517e-02, + 2DIAGNOSTIC, 21, -6.238872205980e-01, 1.019847844309e-02, 1.0935e+00, 1.2934e-02, + 2DIAGNOSTIC, 22, -6.253686647609e-01, 5.481149748860e-03, 1.1054e+00, 1.1894e-02, + 2DIAGNOSTIC, 23, -6.264576445281e-01, 2.761277451356e-03, 1.1174e+00, 1.2003e-02, + 2DIAGNOSTIC, 24, -6.275426294336e-01, 1.667196624293e-03, 1.1382e+00, 2.0759e-02, + 2DIAGNOSTIC, 25, -6.281825968534e-01, 8.199275160646e-04, 1.1519e+00, 1.3751e-02, + 2DIAGNOSTIC, 26, -6.282258941240e-01, 5.058054260224e-04, 1.1647e+00, 1.2806e-02, + 2DIAGNOSTIC, 27, -6.284748036072e-01, 4.017806796674e-04, 1.1786e+00, 1.3895e-02, + 2DIAGNOSTIC, 28, -6.287133814374e-01, 3.170152729287e-04, 1.1913e+00, 1.2683e-02, + 2DIAGNOSTIC, 29, -6.298214724389e-01, 2.603365959223e-04, 1.2042e+00, 1.2888e-02, + 2DIAGNOSTIC, 30, -6.323387932955e-01, 2.604367693243e-04, 1.2217e+00, 1.7528e-02, + 2DIAGNOSTIC, 31, -6.330166574188e-01, 2.557037625878e-04, 1.2507e+00, 2.8981e-02, + 2DIAGNOSTIC, 32, -6.330475921984e-01, 2.528758234444e-04, 1.2652e+00, 1.4547e-02, + 2DIAGNOSTIC, 33, -6.330542105211e-01, 2.444163009534e-04, 1.2800e+00, 1.4745e-02, + 2DIAGNOSTIC, 34, -6.330513635658e-01, 2.298962917020e-04, 1.2927e+00, 1.2759e-02, + 2DIAGNOSTIC, 35, -6.331183882427e-01, 2.046922088695e-04, 1.3071e+00, 1.4386e-02, + 2DIAGNOSTIC, 36, -6.330933548928e-01, 1.619814221405e-04, 1.3214e+00, 1.4235e-02, + 2DIAGNOSTIC, 37, -6.330936014415e-01, 1.108546487103e-04, 1.3357e+00, 1.4300e-02, + 2DIAGNOSTIC, 38, -6.331139859337e-01, 5.609235684924e-05, 1.3517e+00, 1.6023e-02, + 2DIAGNOSTIC, 39, -6.331226601426e-01, 1.326637676162e-05, 1.3637e+00, 1.2038e-02, + 2DIAGNOSTIC, 40, -6.330837433271e-01, 3.359499714275e-06, 1.3799e+00, 1.6151e-02, + 2DIAGNOSTIC, 41, -6.331086167759e-01, 2.573689737141e-06, 1.3949e+00, 1.4981e-02, + 2DIAGNOSTIC, 42, -6.330780076265e-01, 1.671999373228e-06, 1.4073e+00, 1.2416e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.360804986825e-01, 1.797693134862e+308, 1.8344e+00, 4.2708e-01, + 2DIAGNOSTIC, 2, -5.362611715853e-01, 1.797693134862e+308, 1.9219e+00, 8.7538e-02, + 2DIAGNOSTIC, 3, -5.365073272285e-01, 1.797693134862e+308, 2.0087e+00, 8.6763e-02, + 2DIAGNOSTIC, 4, -5.367520481575e-01, 1.797693134862e+308, 2.1083e+00, 9.9659e-02, + 2DIAGNOSTIC, 5, -5.371873472008e-01, 1.797693134862e+308, 2.2215e+00, 1.1322e-01, + 2DIAGNOSTIC, 6, -5.375190255024e-01, 1.797693134862e+308, 2.3077e+00, 8.6179e-02, + 2DIAGNOSTIC, 7, -5.375513702062e-01, 1.797693134862e+308, 2.3931e+00, 8.5379e-02, + 2DIAGNOSTIC, 8, -5.375933127870e-01, 1.797693134862e+308, 2.4935e+00, 1.0044e-01, + 2DIAGNOSTIC, 9, -5.376780317786e-01, 1.797693134862e+308, 2.5936e+00, 1.0009e-01, + 2DIAGNOSTIC, 10, -5.378952536304e-01, 2.276996347695e-04, 2.6974e+00, 1.0379e-01, + 2DIAGNOSTIC, 11, -5.378987383165e-01, 1.806204792134e-04, 2.7831e+00, 8.5707e-02, + 2DIAGNOSTIC, 12, -5.379425402522e-01, 1.355765053323e-04, 2.8694e+00, 8.6243e-02, + 2DIAGNOSTIC, 13, -5.379683691498e-01, 9.673305091275e-05, 2.9669e+00, 9.7567e-02, + 2DIAGNOSTIC, 14, -5.381110319958e-01, 6.911872576465e-05, 3.0918e+00, 1.2489e-01, + 2DIAGNOSTIC, 15, -5.381782695940e-01, 5.626068636262e-05, 3.1889e+00, 9.7094e-02, + 2DIAGNOSTIC, 16, -5.382016556043e-01, 5.178734426947e-05, 3.2738e+00, 8.4867e-02, + 2DIAGNOSTIC, 17, -5.382186692001e-01, 4.494696233748e-05, 3.3555e+00, 8.1772e-02, + 2DIAGNOSTIC, 18, -5.382373747970e-01, 3.667004250223e-05, 3.4537e+00, 9.8169e-02, + 2DIAGNOSTIC, 19, -5.382557603487e-01, 2.867281179236e-05, 3.5961e+00, 1.4237e-01, + 2DIAGNOSTIC, 20, -5.382564286236e-01, 2.470252309052e-05, 3.6837e+00, 8.7565e-02, + 2DIAGNOSTIC, 21, -5.382551844972e-01, 1.904408471298e-05, 3.7804e+00, 9.6718e-02, + 2DIAGNOSTIC, 22, -5.382622154008e-01, 1.353293068612e-05, 3.8766e+00, 9.6278e-02, + 2DIAGNOSTIC, 23, -5.382614761276e-01, 7.865751791791e-06, 3.9728e+00, 9.6155e-02, + 2DIAGNOSTIC, 24, -5.382758009580e-01, 5.484365669259e-06, 4.1353e+00, 1.6248e-01, + 2DIAGNOSTIC, 25, -5.382728751533e-01, 4.251478728054e-06, 4.2300e+00, 9.4738e-02, + 2DIAGNOSTIC, 26, -5.382747821439e-01, 3.353145346018e-06, 4.3119e+00, 8.1917e-02, + 2DIAGNOSTIC, 27, -5.382714240949e-01, 2.582911493666e-06, 4.3935e+00, 8.1528e-02, + 2DIAGNOSTIC, 28, -5.382717480791e-01, 2.084388483280e-06, 4.4912e+00, 9.7751e-02, + 2DIAGNOSTIC, 29, -5.382684857025e-01, 1.803372360137e-06, 4.5877e+00, 9.6458e-02, + 2DIAGNOSTIC, 30, -5.382669087272e-01, 1.460840217488e-06, 4.6860e+00, 9.8350e-02, + 2DIAGNOSTIC, 31, -5.382635707430e-01, 1.024928469068e-06, 4.7667e+00, 8.0705e-02, + Elapsed time (stage 0): 4.9066e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.765816571809e-01, 1.797693134862e+308, 2.0475e-01, 2.0475e-01, + 2DIAGNOSTIC, 2, -8.789550458481e-01, 1.797693134862e+308, 2.0604e-01, 1.2879e-03, + 2DIAGNOSTIC, 3, -8.807921300826e-01, 1.797693134862e+308, 2.0732e-01, 1.2782e-03, + 2DIAGNOSTIC, 4, -8.845576962322e-01, 1.797693134862e+308, 2.0853e-01, 1.2119e-03, + 2DIAGNOSTIC, 5, -8.900933300429e-01, 1.797693134862e+308, 2.0998e-01, 1.4491e-03, + 2DIAGNOSTIC, 6, -8.958109784416e-01, 1.797693134862e+308, 2.1126e-01, 1.2798e-03, + 2DIAGNOSTIC, 7, -9.076031736693e-01, 1.797693134862e+308, 2.1249e-01, 1.2321e-03, + 2DIAGNOSTIC, 8, -9.186825343534e-01, 1.797693134862e+308, 2.1383e-01, 1.3449e-03, + 2DIAGNOSTIC, 9, -9.451633377823e-01, 1.797693134862e+308, 2.1514e-01, 1.3061e-03, + 2DIAGNOSTIC, 10, -9.555133911661e-01, 5.511226582459e-03, 2.1702e-01, 1.8849e-03, + 2DIAGNOSTIC, 11, -9.621274850466e-01, 5.868516749613e-03, 2.1851e-01, 1.4811e-03, + 2DIAGNOSTIC, 12, -9.713899507960e-01, 5.941341358267e-03, 2.1998e-01, 1.4729e-03, + 2DIAGNOSTIC, 13, -9.740197079733e-01, 5.566771611154e-03, 2.2166e-01, 1.6770e-03, + 2DIAGNOSTIC, 14, -9.734695927549e-01, 4.810271937386e-03, 2.2309e-01, 1.4379e-03, + 2DIAGNOSTIC, 15, -9.741252875103e-01, 3.850212579365e-03, 2.2436e-01, 1.2660e-03, + 2DIAGNOSTIC, 16, -9.742952641912e-01, 2.777963464911e-03, 2.2600e-01, 1.6429e-03, + 2DIAGNOSTIC, 17, -9.745635605048e-01, 1.798744585969e-03, 2.2738e-01, 1.3790e-03, + 2DIAGNOSTIC, 18, -9.747580470689e-01, 9.479345405200e-04, 2.2891e-01, 1.5299e-03, + 2DIAGNOSTIC, 19, -9.737515069444e-01, 5.088725500032e-04, 2.3038e-01, 1.4660e-03, + 2DIAGNOSTIC, 20, -9.763089368347e-01, 2.637282129033e-04, 2.3240e-01, 2.0180e-03, + 2DIAGNOSTIC, 21, -9.750806658815e-01, 9.125061442562e-05, 2.3393e-01, 1.5342e-03, + 2DIAGNOSTIC, 22, -9.755066578330e-01, 5.921173784629e-05, 2.3549e-01, 1.5600e-03, + 2DIAGNOSTIC, 23, -9.769229390845e-01, 7.821030617138e-05, 2.3705e-01, 1.5571e-03, + 2DIAGNOSTIC, 24, -9.773623279625e-01, 8.622761449564e-05, 2.3844e-01, 1.3938e-03, + 2DIAGNOSTIC, 25, -9.783913587636e-01, 1.056087967690e-04, 2.4009e-01, 1.6510e-03, + 2DIAGNOSTIC, 26, -9.791828903286e-01, 1.245930500145e-04, 2.4152e-01, 1.4291e-03, + 2DIAGNOSTIC, 27, -9.787398786816e-01, 1.287306911445e-04, 2.4363e-01, 2.1110e-03, + 2DIAGNOSTIC, 28, -9.787410581050e-01, 1.231926285910e-04, 2.4564e-01, 2.0120e-03, + 2DIAGNOSTIC, 29, -9.787470852778e-01, 9.528781136798e-05, 2.4767e-01, 2.0270e-03, + 2DIAGNOSTIC, 30, -9.780217846177e-01, 7.898949443015e-05, 2.4948e-01, 1.8079e-03, + 2DIAGNOSTIC, 31, -9.772390856477e-01, 3.720914054298e-05, 2.5165e-01, 2.1670e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.160183125511e-01, 1.797693134862e+308, 4.5487e-01, 2.0322e-01, + 2DIAGNOSTIC, 2, -8.162079417741e-01, 1.797693134862e+308, 4.5679e-01, 1.9200e-03, + 2DIAGNOSTIC, 3, -8.171513819343e-01, 1.797693134862e+308, 4.5862e-01, 1.8330e-03, + 2DIAGNOSTIC, 4, -8.183157784090e-01, 1.797693134862e+308, 4.6157e-01, 2.9509e-03, + 2DIAGNOSTIC, 5, -8.184756092544e-01, 1.797693134862e+308, 4.6447e-01, 2.8958e-03, + 2DIAGNOSTIC, 6, -8.182355359212e-01, 1.797693134862e+308, 4.6710e-01, 2.6300e-03, + 2DIAGNOSTIC, 7, -8.181038877128e-01, 1.797693134862e+308, 4.6993e-01, 2.8269e-03, + 2DIAGNOSTIC, 8, -8.179558604190e-01, 1.797693134862e+308, 4.7235e-01, 2.4240e-03, + 2DIAGNOSTIC, 9, -8.178364419640e-01, 1.797693134862e+308, 4.7471e-01, 2.3580e-03, + 2DIAGNOSTIC, 10, -8.179543646547e-01, 1.347501469783e-04, 4.7914e-01, 4.4310e-03, + 2DIAGNOSTIC, 11, -8.180541823414e-01, 6.440630826711e-05, 4.8184e-01, 2.7061e-03, + 2DIAGNOSTIC, 12, -8.179347039170e-01, 2.015459051444e-06, 4.8435e-01, 2.5098e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.973640047341e-01, 1.797693134862e+308, 7.1882e-01, 2.3447e-01, + 2DIAGNOSTIC, 2, -6.986208405365e-01, 1.797693134862e+308, 7.3152e-01, 1.2697e-02, + 2DIAGNOSTIC, 3, -7.005795636623e-01, 1.797693134862e+308, 7.4422e-01, 1.2704e-02, + 2DIAGNOSTIC, 4, -7.030368318187e-01, 1.797693134862e+308, 7.5681e-01, 1.2587e-02, + 2DIAGNOSTIC, 5, -7.071707245050e-01, 1.797693134862e+308, 7.6946e-01, 1.2645e-02, + 2DIAGNOSTIC, 6, -7.106086125378e-01, 1.797693134862e+308, 7.8409e-01, 1.4637e-02, + 2DIAGNOSTIC, 7, -7.122346848968e-01, 1.797693134862e+308, 8.0073e-01, 1.6633e-02, + 2DIAGNOSTIC, 8, -7.127740754755e-01, 1.797693134862e+308, 8.1540e-01, 1.4672e-02, + 2DIAGNOSTIC, 9, -7.129548576155e-01, 1.797693134862e+308, 8.3027e-01, 1.4876e-02, + 2DIAGNOSTIC, 10, -7.139599709838e-01, 1.713523868144e-03, 8.4523e-01, 1.4955e-02, + 2DIAGNOSTIC, 11, -7.143637198956e-01, 1.364138373548e-03, 8.6456e-01, 1.9332e-02, + 2DIAGNOSTIC, 12, -7.144640866457e-01, 9.969834323203e-04, 8.8013e-01, 1.5570e-02, + 2DIAGNOSTIC, 13, -7.145376042488e-01, 6.609201915707e-04, 8.9592e-01, 1.5787e-02, + 2DIAGNOSTIC, 14, -7.145976742406e-01, 3.839925664535e-04, 9.1121e-01, 1.5293e-02, + 2DIAGNOSTIC, 15, -7.146000798979e-01, 2.175295743234e-04, 9.2546e-01, 1.4248e-02, + 2DIAGNOSTIC, 16, -7.145628919842e-01, 1.362215613801e-04, 9.4081e-01, 1.5352e-02, + 2DIAGNOSTIC, 17, -7.146302954770e-01, 9.210020021508e-05, 9.5424e-01, 1.3424e-02, + 2DIAGNOSTIC, 18, -7.147966795592e-01, 6.047482630171e-05, 9.7016e-01, 1.5924e-02, + 2DIAGNOSTIC, 19, -7.149442478471e-01, 3.307956240692e-05, 9.8623e-01, 1.6066e-02, + 2DIAGNOSTIC, 20, -7.150934734495e-01, 2.839301379341e-05, 9.9991e-01, 1.3686e-02, + 2DIAGNOSTIC, 21, -7.153606578680e-01, 3.442232853997e-05, 1.0196e+00, 1.9669e-02, + 2DIAGNOSTIC, 22, -7.156089220180e-01, 4.304484506718e-05, 1.0475e+00, 2.7931e-02, + 2DIAGNOSTIC, 23, -7.156490397769e-01, 4.886861197272e-05, 1.0608e+00, 1.3276e-02, + 2DIAGNOSTIC, 24, -7.156524317768e-01, 5.086261086810e-05, 1.0747e+00, 1.3939e-02, + 2DIAGNOSTIC, 25, -7.156380150964e-01, 4.793353130146e-05, 1.0907e+00, 1.6018e-02, + 2DIAGNOSTIC, 26, -7.156254074113e-01, 4.004223831548e-05, 1.1042e+00, 1.3452e-02, + 2DIAGNOSTIC, 27, -7.156367062651e-01, 3.016310604779e-05, 1.1211e+00, 1.6885e-02, + 2DIAGNOSTIC, 28, -7.156260662234e-01, 2.047419410307e-05, 1.1360e+00, 1.4950e-02, + 2DIAGNOSTIC, 29, -7.155990476644e-01, 1.133205580320e-05, 1.1494e+00, 1.3395e-02, + 2DIAGNOSTIC, 30, -7.155996720856e-01, 3.789062570120e-06, 1.1646e+00, 1.5198e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.908522926258e-01, 1.797693134862e+308, 1.5966e+00, 4.3202e-01, + 2DIAGNOSTIC, 2, -5.914733783248e-01, 1.797693134862e+308, 1.6930e+00, 9.6373e-02, + 2DIAGNOSTIC, 3, -5.920820907839e-01, 1.797693134862e+308, 1.7875e+00, 9.4473e-02, + 2DIAGNOSTIC, 4, -5.925458882474e-01, 1.797693134862e+308, 1.8817e+00, 9.4252e-02, + 2DIAGNOSTIC, 5, -5.927338296399e-01, 1.797693134862e+308, 2.0070e+00, 1.2529e-01, + 2DIAGNOSTIC, 6, -5.927883651767e-01, 1.797693134862e+308, 2.1028e+00, 9.5797e-02, + 2DIAGNOSTIC, 7, -5.928723111694e-01, 1.797693134862e+308, 2.2100e+00, 1.0717e-01, + 2DIAGNOSTIC, 8, -5.928987886305e-01, 1.797693134862e+308, 2.3015e+00, 9.1466e-02, + 2DIAGNOSTIC, 9, -5.929192881553e-01, 1.797693134862e+308, 2.4109e+00, 1.0943e-01, + 2DIAGNOSTIC, 10, -5.929345612328e-01, 1.989318560536e-04, 2.5496e+00, 1.3875e-01, + 2DIAGNOSTIC, 11, -5.929358630091e-01, 1.145461123672e-04, 2.6919e+00, 1.4223e-01, + 2DIAGNOSTIC, 12, -5.929349311120e-01, 5.861297553594e-05, 2.8171e+00, 1.2527e-01, + 2DIAGNOSTIC, 13, -5.929337106086e-01, 2.825814963774e-05, 2.9286e+00, 1.1146e-01, + 2DIAGNOSTIC, 14, -5.929321565400e-01, 1.560360665133e-05, 3.0403e+00, 1.1169e-01, + 2DIAGNOSTIC, 15, -5.929317236714e-01, 9.401612700619e-06, 3.1522e+00, 1.1192e-01, + 2DIAGNOSTIC, 16, -5.929291429808e-01, 4.809452771384e-06, 3.2640e+00, 1.1178e-01, + 2DIAGNOSTIC, 17, -5.929300055648e-01, 2.884923700881e-06, 3.3695e+00, 1.0552e-01, + 2DIAGNOSTIC, 18, -5.929266410226e-01, 1.685498667449e-06, 3.4628e+00, 9.3303e-02, + 2DIAGNOSTIC, 19, -5.929256207843e-01, 1.103093540053e-06, 3.5537e+00, 9.0904e-02, + 2DIAGNOSTIC, 20, -5.929272122948e-01, 1.035428040565e-06, 3.6597e+00, 1.0597e-01, + 2DIAGNOSTIC, 21, -5.929271459543e-01, 1.052272516393e-06, 3.7522e+00, 9.2526e-02, + 2DIAGNOSTIC, 22, -5.929254688019e-01, 1.054426108898e-06, 3.8436e+00, 9.1429e-02, + 2DIAGNOSTIC, 23, -5.929272978650e-01, 1.108420679817e-06, 3.9513e+00, 1.0765e-01, + 2DIAGNOSTIC, 24, -5.929267966659e-01, 1.141556377586e-06, 4.0578e+00, 1.0650e-01, + 2DIAGNOSTIC, 25, -5.929307050449e-01, 1.256309678517e-06, 4.1770e+00, 1.1921e-01, + 2DIAGNOSTIC, 26, -5.929263746266e-01, 1.233228826926e-06, 4.2834e+00, 1.0644e-01, + 2DIAGNOSTIC, 27, -5.929262527858e-01, 1.229361764936e-06, 4.4046e+00, 1.2119e-01, + 2DIAGNOSTIC, 28, -5.929230632849e-01, 1.109425213294e-06, 4.4956e+00, 9.1017e-02, + Elapsed time (stage 1): 4.6308e+00 + + +Total elapsed time: 9.5408e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:47:24 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:47:24 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55cacba7c4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 44.028, -137.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cacba81fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f511293e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55cacba7d850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 44.028, -137.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cacba7af30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f510f27f010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55cacba94b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 44.028, -137.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cacba81550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f510bbc0010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55cacba99d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 44.028, -137.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cacba97c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5108501010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55cacba9bf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 44.028, -137.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cacba9a3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5104e42010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55cacba9c540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 44.028, -137.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cacba9c4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5101783010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.446620025568e-01, 1.797693134862e+308, 2.1604e-01, 2.1604e-01, + 2DIAGNOSTIC, 2, -6.471582639961e-01, 1.797693134862e+308, 2.1805e-01, 2.0161e-03, + 2DIAGNOSTIC, 3, -6.507273946887e-01, 1.797693134862e+308, 2.2004e-01, 1.9920e-03, + 2DIAGNOSTIC, 4, -6.550832620790e-01, 1.797693134862e+308, 2.2201e-01, 1.9710e-03, + 2DIAGNOSTIC, 5, -6.598302129985e-01, 1.797693134862e+308, 2.2436e-01, 2.3501e-03, + 2DIAGNOSTIC, 6, -6.622419417351e-01, 1.797693134862e+308, 2.2643e-01, 2.0628e-03, + 2DIAGNOSTIC, 7, -6.631366985451e-01, 1.797693134862e+308, 2.2873e-01, 2.3029e-03, + 2DIAGNOSTIC, 8, -6.629542944335e-01, 1.797693134862e+308, 2.3073e-01, 2.0039e-03, + 2DIAGNOSTIC, 9, -6.633489640730e-01, 1.797693134862e+308, 2.3294e-01, 2.2080e-03, + 2DIAGNOSTIC, 10, -6.636105644956e-01, 1.985150765093e-03, 2.3594e-01, 2.9991e-03, + 2DIAGNOSTIC, 11, -6.636301899808e-01, 1.382899870640e-03, 2.3807e-01, 2.1250e-03, + 2DIAGNOSTIC, 12, -6.636445341362e-01, 8.489797524488e-04, 2.4074e-01, 2.6700e-03, + 2DIAGNOSTIC, 13, -6.636482456370e-01, 4.391565475817e-04, 2.4276e-01, 2.0251e-03, + 2DIAGNOSTIC, 14, -6.636661265835e-01, 1.803059031035e-04, 2.4662e-01, 3.8559e-03, + 2DIAGNOSTIC, 15, -6.636661579621e-01, 7.440707670818e-05, 2.5338e-01, 6.7599e-03, + 2DIAGNOSTIC, 16, -6.636661579616e-01, 3.953635272358e-05, 2.5858e-01, 5.2052e-03, + 2DIAGNOSTIC, 17, -6.636661579616e-01, 2.836548180998e-05, 2.6094e-01, 2.3620e-03, + 2DIAGNOSTIC, 18, -6.636661579616e-01, 1.144166361537e-05, 2.6321e-01, 2.2700e-03, + 2DIAGNOSTIC, 19, -6.636661579616e-01, 4.187432482872e-06, 2.6578e-01, 2.5611e-03, + 2DIAGNOSTIC, 20, -6.636661579616e-01, 3.049468610163e-06, 2.6801e-01, 2.2309e-03, + 2DIAGNOSTIC, 21, -6.636661579616e-01, 2.285737437872e-06, 2.7084e-01, 2.8379e-03, + 2DIAGNOSTIC, 22, -6.636661579616e-01, 1.803014508889e-06, 2.7359e-01, 2.7418e-03, + 2DIAGNOSTIC, 23, -6.636661579616e-01, 1.389448513633e-06, 2.7674e-01, 3.1500e-03, + 2DIAGNOSTIC, 24, -6.636661579616e-01, 1.330759171643e-06, 2.7916e-01, 2.4259e-03, + 2DIAGNOSTIC, 25, -6.636661579616e-01, 1.277322742591e-06, 2.8160e-01, 2.4390e-03, + 2DIAGNOSTIC, 26, -6.636661579616e-01, 1.228012098731e-06, 2.8405e-01, 2.4459e-03, + 2DIAGNOSTIC, 27, -6.636661579616e-01, 1.182367184417e-06, 2.8647e-01, 2.4250e-03, + 2DIAGNOSTIC, 28, -6.636661579616e-01, 1.139993885894e-06, 2.8913e-01, 2.6581e-03, + 2DIAGNOSTIC, 29, -6.636661579616e-01, 1.100552631278e-06, 2.9149e-01, 2.3601e-03, + 2DIAGNOSTIC, 30, -6.636661579616e-01, 1.063749270842e-06, 2.9386e-01, 2.3701e-03, + 2DIAGNOSTIC, 31, -6.636661579616e-01, 1.029327728136e-06, 2.9674e-01, 2.8801e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.599007276300e-01, 1.797693134862e+308, 5.3918e-01, 2.4244e-01, + 2DIAGNOSTIC, 2, -5.611023407871e-01, 1.797693134862e+308, 5.5302e-01, 1.3841e-02, + 2DIAGNOSTIC, 3, -5.620284504021e-01, 1.797693134862e+308, 5.6660e-01, 1.3574e-02, + 2DIAGNOSTIC, 4, -5.629664806840e-01, 1.797693134862e+308, 5.7978e-01, 1.3186e-02, + 2DIAGNOSTIC, 5, -5.634405609429e-01, 1.797693134862e+308, 5.9583e-01, 1.6046e-02, + 2DIAGNOSTIC, 6, -5.635417753926e-01, 1.797693134862e+308, 6.1125e-01, 1.5425e-02, + 2DIAGNOSTIC, 7, -5.636037954226e-01, 1.797693134862e+308, 6.3069e-01, 1.9437e-02, + 2DIAGNOSTIC, 8, -5.636408011939e-01, 1.797693134862e+308, 6.4649e-01, 1.5799e-02, + 2DIAGNOSTIC, 9, -5.636708576614e-01, 1.797693134862e+308, 6.6675e-01, 2.0258e-02, + 2DIAGNOSTIC, 10, -5.636972001680e-01, 3.812810978408e-04, 6.8067e-01, 1.3918e-02, + 2DIAGNOSTIC, 11, -5.636870674272e-01, 2.159304044877e-04, 6.9636e-01, 1.5694e-02, + 2DIAGNOSTIC, 12, -5.636723795182e-01, 1.086801748883e-04, 7.1254e-01, 1.6176e-02, + 2DIAGNOSTIC, 13, -5.636992683444e-01, 4.461867348869e-05, 7.2757e-01, 1.5035e-02, + 2DIAGNOSTIC, 14, -5.636750726018e-01, 1.836313975047e-05, 7.4346e-01, 1.5887e-02, + 2DIAGNOSTIC, 15, -5.636850684289e-01, 1.038919818533e-05, 7.5934e-01, 1.5884e-02, + 2DIAGNOSTIC, 16, -5.636715180041e-01, 5.393490749309e-06, 7.7593e-01, 1.6591e-02, + 2DIAGNOSTIC, 17, -5.636837329896e-01, 2.877469702151e-06, 7.9207e-01, 1.6138e-02, + 2DIAGNOSTIC, 18, -5.636686627188e-01, 1.125185431598e-06, 8.0655e-01, 1.4479e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.703228305555e-01, 1.797693134862e+308, 1.2020e+00, 3.9541e-01, + 2DIAGNOSTIC, 2, -4.710778996016e-01, 1.797693134862e+308, 1.3084e+00, 1.0639e-01, + 2DIAGNOSTIC, 3, -4.716358520802e-01, 1.797693134862e+308, 1.4078e+00, 9.9493e-02, + 2DIAGNOSTIC, 4, -4.719374685880e-01, 1.797693134862e+308, 1.5181e+00, 1.1029e-01, + 2DIAGNOSTIC, 5, -4.719707402629e-01, 1.797693134862e+308, 1.6193e+00, 1.0119e-01, + 2DIAGNOSTIC, 6, -4.719973694174e-01, 1.797693134862e+308, 1.7171e+00, 9.7796e-02, + 2DIAGNOSTIC, 7, -4.720420342296e-01, 1.797693134862e+308, 1.8137e+00, 9.6623e-02, + 2DIAGNOSTIC, 8, -4.725999899399e-01, 1.797693134862e+308, 1.9444e+00, 1.3062e-01, + 2DIAGNOSTIC, 9, -4.727181465280e-01, 1.797693134862e+308, 2.2157e+00, 2.7133e-01, + 2DIAGNOSTIC, 10, -4.727194867697e-01, 2.778008567629e-04, 2.3234e+00, 1.0770e-01, + 2DIAGNOSTIC, 11, -4.727170718973e-01, 1.909387162568e-04, 2.4437e+00, 1.2027e-01, + 2DIAGNOSTIC, 12, -4.727163750981e-01, 1.389255505586e-04, 2.5371e+00, 9.3390e-02, + 2DIAGNOSTIC, 13, -4.727158047884e-01, 1.076090993560e-04, 2.6551e+00, 1.1804e-01, + 2DIAGNOSTIC, 14, -4.727147519439e-01, 8.397163663758e-05, 2.7595e+00, 1.0436e-01, + 2DIAGNOSTIC, 15, -4.727136139980e-01, 5.765936152742e-05, 2.8531e+00, 9.3597e-02, + 2DIAGNOSTIC, 16, -4.727126372142e-01, 3.079145384778e-05, 2.9456e+00, 9.2521e-02, + 2DIAGNOSTIC, 17, -4.727133026250e-01, 5.526541329959e-06, 3.0527e+00, 1.0712e-01, + 2DIAGNOSTIC, 18, -4.727142451886e-01, 1.304834015371e-06, 3.1460e+00, 9.3279e-02, + 2DIAGNOSTIC, 19, -4.727130765795e-01, 1.273371026463e-06, 3.2412e+00, 9.5259e-02, + 2DIAGNOSTIC, 20, -4.727156832499e-01, 1.405223502775e-06, 3.3479e+00, 1.0671e-01, + 2DIAGNOSTIC, 21, -4.727154705342e-01, 1.464912526492e-06, 3.4573e+00, 1.0937e-01, + 2DIAGNOSTIC, 22, -4.727115485154e-01, 1.397414117324e-06, 3.5661e+00, 1.0882e-01, + 2DIAGNOSTIC, 23, -4.727142328704e-01, 1.399358400919e-06, 3.6615e+00, 9.5377e-02, + 2DIAGNOSTIC, 24, -4.727180799685e-01, 1.467511315419e-06, 3.8080e+00, 1.4651e-01, + 2DIAGNOSTIC, 25, -4.727193785309e-01, 1.517715043954e-06, 3.9148e+00, 1.0682e-01, + 2DIAGNOSTIC, 26, -4.727174625792e-01, 1.474934269573e-06, 4.0223e+00, 1.0751e-01, + 2DIAGNOSTIC, 27, -4.727172524579e-01, 1.426123377307e-06, 4.1443e+00, 1.2200e-01, + 2DIAGNOSTIC, 28, -4.727163374323e-01, 1.358517724821e-06, 4.2487e+00, 1.0440e-01, + 2DIAGNOSTIC, 29, -4.727141354494e-01, 1.199971534860e-06, 4.3429e+00, 9.4177e-02, + 2DIAGNOSTIC, 30, -4.727123026499e-01, 1.058276822931e-06, 4.4431e+00, 1.0017e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.127885804681e-01, 1.797693134862e+308, 6.1165e+00, 1.6734e+00, + 2DIAGNOSTIC, 2, -4.127870255281e-01, 1.797693134862e+308, 6.8101e+00, 6.9359e-01, + 2DIAGNOSTIC, 3, -4.127869533558e-01, 1.797693134862e+308, 7.6954e+00, 8.8533e-01, + 2DIAGNOSTIC, 4, -4.127866897288e-01, 1.797693134862e+308, 8.3231e+00, 6.2769e-01, + 2DIAGNOSTIC, 5, -4.127866051581e-01, 1.797693134862e+308, 9.0156e+00, 6.9243e-01, + 2DIAGNOSTIC, 6, -4.127865720090e-01, 1.797693134862e+308, 9.6459e+00, 6.3038e-01, + 2DIAGNOSTIC, 7, -4.127861161316e-01, 1.797693134862e+308, 1.0304e+01, 6.5797e-01, + 2DIAGNOSTIC, 8, -4.127862353730e-01, 1.797693134862e+308, 1.1015e+01, 7.1060e-01, + 2DIAGNOSTIC, 9, -4.127861520217e-01, 1.797693134862e+308, 1.1665e+01, 6.5086e-01, + 2DIAGNOSTIC, 10, -4.127858976501e-01, 2.890213613896e-06, 1.2254e+01, 5.8850e-01, + 2DIAGNOSTIC, 11, -4.127858199475e-01, 2.719472408444e-06, 1.2895e+01, 6.4120e-01, + 2DIAGNOSTIC, 12, -4.127857718058e-01, 2.500814731091e-06, 1.3560e+01, 6.6443e-01, + 2DIAGNOSTIC, 13, -4.127856879198e-01, 2.321198439861e-06, 1.4199e+01, 6.3975e-01, + 2DIAGNOSTIC, 14, -4.127856161507e-01, 2.162020829671e-06, 1.4829e+01, 6.2944e-01, + 2DIAGNOSTIC, 15, -4.127854105363e-01, 2.020917286030e-06, 1.5397e+01, 5.6791e-01, + 2DIAGNOSTIC, 16, -4.127854155194e-01, 1.906214316685e-06, 1.6025e+01, 6.2833e-01, + 2DIAGNOSTIC, 17, -4.127855683352e-01, 1.799828014938e-06, 1.6667e+01, 6.4220e-01, + 2DIAGNOSTIC, 18, -4.127854240795e-01, 1.710600329143e-06, 1.7366e+01, 6.9836e-01, + 2DIAGNOSTIC, 19, -4.127853364294e-01, 1.630319218737e-06, 1.8011e+01, 6.4530e-01, + 2DIAGNOSTIC, 20, -4.127851124367e-01, 1.545926257694e-06, 1.8560e+01, 5.4933e-01, + 2DIAGNOSTIC, 21, -4.127849381751e-01, 1.465537410962e-06, 1.9191e+01, 6.3078e-01, + 2DIAGNOSTIC, 22, -4.127850448221e-01, 1.398788702263e-06, 1.9748e+01, 5.5740e-01, + 2DIAGNOSTIC, 23, -4.127849286735e-01, 1.336056225883e-06, 2.0403e+01, 6.5499e-01, + 2DIAGNOSTIC, 24, -4.127847489198e-01, 1.276115136124e-06, 2.0960e+01, 5.5685e-01, + 2DIAGNOSTIC, 25, -4.127849445113e-01, 1.225586082988e-06, 2.1667e+01, 7.0708e-01, + 2DIAGNOSTIC, 26, -4.127848743016e-01, 1.181253011594e-06, 2.2290e+01, 6.2307e-01, + 2DIAGNOSTIC, 27, -4.127846892556e-01, 1.143361333028e-06, 2.2905e+01, 6.1496e-01, + 2DIAGNOSTIC, 28, -4.127841949863e-01, 1.095924279479e-06, 2.3519e+01, 6.1397e-01, + 2DIAGNOSTIC, 29, -4.127841330660e-01, 1.052462995491e-06, 2.4160e+01, 6.4041e-01, + 2DIAGNOSTIC, 30, -4.127840607988e-01, 1.009182099283e-06, 2.4791e+01, 6.3176e-01, + Elapsed time (stage 0): 2.5169e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.480947832738e-01, 1.797693134862e+308, 1.9187e-01, 1.9187e-01, + 2DIAGNOSTIC, 2, -6.496879489315e-01, 1.797693134862e+308, 1.9400e-01, 2.1291e-03, + 2DIAGNOSTIC, 3, -6.517625625662e-01, 1.797693134862e+308, 1.9627e-01, 2.2750e-03, + 2DIAGNOSTIC, 4, -6.534532403058e-01, 1.797693134862e+308, 1.9868e-01, 2.4130e-03, + 2DIAGNOSTIC, 5, -6.542153031887e-01, 1.797693134862e+308, 2.0106e-01, 2.3730e-03, + 2DIAGNOSTIC, 6, -6.554308593553e-01, 1.797693134862e+308, 2.0387e-01, 2.8071e-03, + 2DIAGNOSTIC, 7, -6.556941026228e-01, 1.797693134862e+308, 2.0636e-01, 2.4960e-03, + 2DIAGNOSTIC, 8, -6.559271346853e-01, 1.797693134862e+308, 2.0973e-01, 3.3739e-03, + 2DIAGNOSTIC, 9, -6.559122859197e-01, 1.797693134862e+308, 2.1772e-01, 7.9861e-03, + 2DIAGNOSTIC, 10, -6.559122486943e-01, 7.609267500333e-04, 2.2037e-01, 2.6469e-03, + 2DIAGNOSTIC, 11, -6.559122817248e-01, 4.936484704734e-04, 2.2299e-01, 2.6200e-03, + 2DIAGNOSTIC, 12, -6.559123375740e-01, 2.834215444536e-04, 2.2600e-01, 3.0141e-03, + 2DIAGNOSTIC, 13, -6.559124319989e-01, 1.488065513870e-04, 2.2873e-01, 2.7289e-03, + 2DIAGNOSTIC, 14, -6.559125916263e-01, 7.253427401367e-05, 2.3137e-01, 2.6360e-03, + 2DIAGNOSTIC, 15, -6.559128609798e-01, 2.130984536351e-05, 2.3401e-01, 2.6422e-03, + 2DIAGNOSTIC, 16, -6.559133155949e-01, 7.612188257969e-06, 2.3667e-01, 2.6569e-03, + 2DIAGNOSTIC, 17, -6.559140833298e-01, 1.579743841053e-06, 2.3928e-01, 2.6181e-03, + 2DIAGNOSTIC, 18, -6.559153774811e-01, 1.907932901696e-06, 2.4183e-01, 2.5461e-03, + 2DIAGNOSTIC, 19, -6.559175541191e-01, 1.898757968653e-06, 2.4442e-01, 2.5859e-03, + 2DIAGNOSTIC, 20, -6.559211972471e-01, 1.947320346321e-06, 2.4693e-01, 2.5179e-03, + 2DIAGNOSTIC, 21, -6.559272907396e-01, 2.083520558048e-06, 2.4941e-01, 2.4800e-03, + 2DIAGNOSTIC, 22, -6.559373583780e-01, 2.351967750155e-06, 2.5192e-01, 2.5020e-03, + 2DIAGNOSTIC, 23, -6.559538404070e-01, 2.821803082170e-06, 2.5442e-01, 2.5029e-03, + 2DIAGNOSTIC, 24, -6.559805927778e-01, 3.598981254613e-06, 2.5724e-01, 2.8191e-03, + 2DIAGNOSTIC, 25, -6.558632571891e-01, 2.060570007192e-06, 2.5977e-01, 2.5332e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.663816439372e-01, 1.797693134862e+308, 4.8518e-01, 2.2541e-01, + 2DIAGNOSTIC, 2, -5.674920449961e-01, 1.797693134862e+308, 4.9962e-01, 1.4436e-02, + 2DIAGNOSTIC, 3, -5.683290466270e-01, 1.797693134862e+308, 5.1427e-01, 1.4654e-02, + 2DIAGNOSTIC, 4, -5.687250121530e-01, 1.797693134862e+308, 5.2945e-01, 1.5181e-02, + 2DIAGNOSTIC, 5, -5.689228819549e-01, 1.797693134862e+308, 5.4433e-01, 1.4880e-02, + 2DIAGNOSTIC, 6, -5.693140545621e-01, 1.797693134862e+308, 5.6122e-01, 1.6887e-02, + 2DIAGNOSTIC, 7, -5.695894111042e-01, 1.797693134862e+308, 5.8761e-01, 2.6387e-02, + 2DIAGNOSTIC, 8, -5.695952421710e-01, 1.797693134862e+308, 6.0206e-01, 1.4453e-02, + 2DIAGNOSTIC, 9, -5.696234032124e-01, 1.797693134862e+308, 6.1681e-01, 1.4751e-02, + 2DIAGNOSTIC, 10, -5.696388207027e-01, 3.268029488856e-04, 6.3187e-01, 1.5058e-02, + 2DIAGNOSTIC, 11, -5.696621773906e-01, 1.984074373909e-04, 6.4696e-01, 1.5095e-02, + 2DIAGNOSTIC, 12, -5.696847044859e-01, 1.201527230922e-04, 6.6185e-01, 1.4890e-02, + 2DIAGNOSTIC, 13, -5.697258228274e-01, 7.693347717116e-05, 6.7594e-01, 1.4089e-02, + 2DIAGNOSTIC, 14, -5.699710319824e-01, 5.609146423603e-05, 6.9369e-01, 1.7753e-02, + 2DIAGNOSTIC, 15, -5.700470044017e-01, 4.175692213176e-05, 7.1006e-01, 1.6363e-02, + 2DIAGNOSTIC, 16, -5.700553858728e-01, 3.785102207284e-05, 7.3196e-01, 2.1905e-02, + 2DIAGNOSTIC, 17, -5.700848993562e-01, 4.018961218392e-05, 7.7925e-01, 4.7290e-02, + 2DIAGNOSTIC, 18, -5.700848990693e-01, 3.885020489772e-05, 7.9312e-01, 1.3870e-02, + 2DIAGNOSTIC, 19, -5.700849008490e-01, 3.485418655986e-05, 8.0769e-01, 1.4565e-02, + 2DIAGNOSTIC, 20, -5.700849038582e-01, 2.852336999559e-05, 8.2251e-01, 1.4824e-02, + 2DIAGNOSTIC, 21, -5.700849089467e-01, 2.092155710660e-05, 8.3716e-01, 1.4646e-02, + 2DIAGNOSTIC, 22, -5.700849175508e-01, 1.276760911497e-05, 8.5181e-01, 1.4655e-02, + 2DIAGNOSTIC, 23, -5.700849321172e-01, 5.024818710057e-06, 8.6641e-01, 1.4597e-02, + 2DIAGNOSTIC, 24, -5.700849567571e-01, 2.653096021092e-06, 8.8089e-01, 1.4482e-02, + 2DIAGNOSTIC, 25, -5.700849984145e-01, 1.866466237600e-06, 8.9660e-01, 1.5708e-02, + 2DIAGNOSTIC, 26, -5.700850687507e-01, 1.230615841730e-06, 9.1143e-01, 1.4827e-02, + 2DIAGNOSTIC, 27, -5.700851876010e-01, 1.188991382947e-06, 9.2616e-01, 1.4733e-02, + 2DIAGNOSTIC, 28, -5.700853885307e-01, 1.152962159343e-06, 9.4098e-01, 1.4820e-02, + 2DIAGNOSTIC, 29, -5.700857279591e-01, 1.123730096510e-06, 9.5505e-01, 1.4068e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.744979054517e-01, 1.797693134862e+308, 1.3412e+00, 3.8617e-01, + 2DIAGNOSTIC, 2, -4.753392599253e-01, 1.797693134862e+308, 1.4434e+00, 1.0218e-01, + 2DIAGNOSTIC, 3, -4.762724309840e-01, 1.797693134862e+308, 1.5458e+00, 1.0235e-01, + 2DIAGNOSTIC, 4, -4.769373050280e-01, 1.797693134862e+308, 1.6474e+00, 1.0166e-01, + 2DIAGNOSTIC, 5, -4.771201531448e-01, 1.797693134862e+308, 1.7645e+00, 1.1711e-01, + 2DIAGNOSTIC, 6, -4.771706007199e-01, 1.797693134862e+308, 1.9105e+00, 1.4598e-01, + 2DIAGNOSTIC, 7, -4.772042257400e-01, 1.797693134862e+308, 2.0159e+00, 1.0542e-01, + 2DIAGNOSTIC, 8, -4.772662070849e-01, 1.797693134862e+308, 2.1338e+00, 1.1792e-01, + 2DIAGNOSTIC, 9, -4.772759895643e-01, 1.797693134862e+308, 2.2390e+00, 1.0516e-01, + 2DIAGNOSTIC, 10, -4.773034350268e-01, 3.208895577269e-04, 2.3722e+00, 1.3322e-01, + 2DIAGNOSTIC, 11, -4.773221192425e-01, 1.760662114049e-04, 2.4903e+00, 1.1806e-01, + 2DIAGNOSTIC, 12, -4.773275210956e-01, 8.111412881087e-05, 2.6097e+00, 1.1940e-01, + 2DIAGNOSTIC, 13, -4.773296824958e-01, 3.582282801426e-05, 2.7274e+00, 1.1774e-01, + 2DIAGNOSTIC, 14, -4.773281246873e-01, 2.203513599118e-05, 2.8335e+00, 1.0606e-01, + 2DIAGNOSTIC, 15, -4.773329601624e-01, 1.572331014073e-05, 2.9512e+00, 1.1774e-01, + 2DIAGNOSTIC, 16, -4.773266518201e-01, 1.057513190460e-05, 3.0834e+00, 1.3214e-01, + 2DIAGNOSTIC, 17, -4.773282608627e-01, 6.436963940065e-06, 3.2156e+00, 1.3225e-01, + 2DIAGNOSTIC, 18, -4.773256038923e-01, 4.309943414889e-06, 3.3608e+00, 1.4514e-01, + 2DIAGNOSTIC, 19, -4.773256047424e-01, 2.463231715349e-06, 3.4767e+00, 1.1593e-01, + 2DIAGNOSTIC, 20, -4.773256086519e-01, 1.531217323422e-06, 3.5957e+00, 1.1906e-01, + 2DIAGNOSTIC, 21, -4.773256147285e-01, 1.220674145562e-06, 3.6999e+00, 1.0418e-01, + 2DIAGNOSTIC, 22, -4.773242434898e-01, 1.075219314459e-06, 3.8066e+00, 1.0669e-01, + 2DIAGNOSTIC, 23, -4.773229059903e-01, 1.000559650362e-06, 3.9131e+00, 1.0647e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.126206191809e-01, 1.797693134862e+308, 5.2688e+00, 1.3557e+00, + 2DIAGNOSTIC, 2, -4.129321906839e-01, 1.797693134862e+308, 5.8877e+00, 6.1889e-01, + 2DIAGNOSTIC, 3, -4.130335918374e-01, 1.797693134862e+308, 6.5940e+00, 7.0632e-01, + 2DIAGNOSTIC, 4, -4.131178065840e-01, 1.797693134862e+308, 7.3153e+00, 7.2132e-01, + 2DIAGNOSTIC, 5, -4.132380779647e-01, 1.797693134862e+308, 7.9466e+00, 6.3127e-01, + 2DIAGNOSTIC, 6, -4.145666026826e-01, 1.797693134862e+308, 9.5091e+00, 1.5625e+00, + 2DIAGNOSTIC, 7, -4.145653930183e-01, 1.797693134862e+308, 1.0881e+01, 1.3718e+00, + 2DIAGNOSTIC, 8, -4.145654375342e-01, 1.797693134862e+308, 1.1600e+01, 7.1913e-01, + 2DIAGNOSTIC, 9, -4.145650437647e-01, 1.797693134862e+308, 1.2334e+01, 7.3380e-01, + 2DIAGNOSTIC, 10, -4.145649416178e-01, 3.700843930844e-04, 1.2952e+01, 6.1816e-01, + 2DIAGNOSTIC, 11, -4.145648717205e-01, 2.904548470844e-04, 1.3563e+01, 6.1053e-01, + 2DIAGNOSTIC, 12, -4.145647071724e-01, 2.158759586317e-04, 1.4283e+01, 7.2085e-01, + 2DIAGNOSTIC, 13, -4.145645990925e-01, 1.399813972002e-04, 1.5049e+01, 7.6530e-01, + 2DIAGNOSTIC, 14, -4.145645257659e-01, 6.719490215573e-05, 1.5730e+01, 6.8168e-01, + 2DIAGNOSTIC, 15, -4.145644324665e-01, 1.954707012489e-06, 1.6523e+01, 7.9248e-01, + 2DIAGNOSTIC, 16, -4.145643088539e-01, 1.882682480608e-06, 1.7238e+01, 7.1521e-01, + 2DIAGNOSTIC, 17, -4.145641785641e-01, 1.774845222534e-06, 1.7866e+01, 6.2772e-01, + 2DIAGNOSTIC, 18, -4.145640611388e-01, 1.685785516702e-06, 1.8486e+01, 6.2050e-01, + 2DIAGNOSTIC, 19, -4.145639654676e-01, 1.596193108896e-06, 1.9210e+01, 7.2383e-01, + 2DIAGNOSTIC, 20, -4.145640186668e-01, 1.521285602699e-06, 1.9918e+01, 7.0814e-01, + 2DIAGNOSTIC, 21, -4.145639040914e-01, 1.454097212347e-06, 2.0637e+01, 7.1917e-01, + 2DIAGNOSTIC, 22, -4.145637960593e-01, 1.390504337860e-06, 2.1279e+01, 6.4185e-01, + 2DIAGNOSTIC, 23, -4.145637162305e-01, 1.332270672165e-06, 2.1903e+01, 6.2367e-01, + 2DIAGNOSTIC, 24, -4.145638331062e-01, 1.285005230618e-06, 2.2613e+01, 7.1050e-01, + 2DIAGNOSTIC, 25, -4.145638231359e-01, 1.242414873787e-06, 2.3316e+01, 7.0230e-01, + 2DIAGNOSTIC, 26, -4.145638130051e-01, 1.202571519969e-06, 2.4019e+01, 7.0351e-01, + 2DIAGNOSTIC, 27, -4.145637132013e-01, 1.162082613713e-06, 2.4736e+01, 7.1670e-01, + 2DIAGNOSTIC, 28, -4.145635432480e-01, 1.119172233964e-06, 2.5354e+01, 6.1756e-01, + 2DIAGNOSTIC, 29, -4.145634604433e-01, 1.076603181466e-06, 2.6171e+01, 8.1721e-01, + 2DIAGNOSTIC, 30, -4.145635580997e-01, 1.042290071820e-06, 2.7009e+01, 8.3870e-01, + 2DIAGNOSTIC, 31, -4.145634420361e-01, 1.006816833543e-06, 2.7711e+01, 7.0190e-01, + Elapsed time (stage 1): 2.8105e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.052693591904e-01, 1.797693134862e+308, 2.6433e-01, 2.6433e-01, + 1DIAGNOSTIC, 2, -9.196325384088e-01, 1.797693134862e+308, 3.6877e-01, 1.0443e-01, + 1DIAGNOSTIC, 3, -9.319308963108e-01, 1.797693134862e+308, 4.6910e-01, 1.0033e-01, + 1DIAGNOSTIC, 4, -9.400463558570e-01, 1.797693134862e+308, 5.6710e-01, 9.7995e-02, + 1DIAGNOSTIC, 5, -9.467637489879e-01, 1.797693134862e+308, 6.6432e-01, 9.7222e-02, + 1DIAGNOSTIC, 6, -9.510950127975e-01, 1.797693134862e+308, 7.6436e-01, 1.0004e-01, + 1DIAGNOSTIC, 7, -9.543569448629e-01, 1.797693134862e+308, 8.5936e-01, 9.5008e-02, + 1DIAGNOSTIC, 8, -9.565965698720e-01, 1.797693134862e+308, 9.5873e-01, 9.9367e-02, + 1DIAGNOSTIC, 9, -9.581488785172e-01, 1.797693134862e+308, 1.0611e+00, 1.0240e-01, + 1DIAGNOSTIC, 10, -9.591647733021e-01, 3.389031863675e-03, 1.1624e+00, 1.0125e-01, + 1DIAGNOSTIC, 11, -9.594274333708e-01, 2.231876295121e-03, 1.2625e+00, 1.0017e-01, + 1DIAGNOSTIC, 12, -9.595325670894e-01, 1.428565975789e-03, 1.3600e+00, 9.7421e-02, + 1DIAGNOSTIC, 13, -9.596866893213e-01, 9.068891380502e-04, 1.4559e+00, 9.5956e-02, + 1DIAGNOSTIC, 14, -9.598289903319e-01, 5.529557074911e-04, 1.5562e+00, 1.0032e-01, + 1DIAGNOSTIC, 15, -9.598684825473e-01, 3.301498334377e-04, 1.6508e+00, 9.4564e-02, + 1DIAGNOSTIC, 16, -9.600181934762e-01, 1.884751701441e-04, 1.7462e+00, 9.5441e-02, + 1DIAGNOSTIC, 17, -9.600119281846e-01, 1.032283915953e-04, 1.8437e+00, 9.7487e-02, + 1DIAGNOSTIC, 18, -9.601780000311e-01, 5.769649115893e-05, 1.9366e+00, 9.2841e-02, + 1DIAGNOSTIC, 19, -9.601721026805e-01, 3.569261683189e-05, 2.0353e+00, 9.8704e-02, + 1DIAGNOSTIC, 20, -9.603391319885e-01, 3.037453855102e-05, 2.1335e+00, 9.8207e-02, + 1DIAGNOSTIC, 21, -9.603267507847e-01, 2.639701514130e-05, 2.2356e+00, 1.0208e-01, + 1DIAGNOSTIC, 22, -9.604927439580e-01, 2.413058219722e-05, 2.3324e+00, 9.6847e-02, + 1DIAGNOSTIC, 23, -9.604804238465e-01, 2.170346616955e-05, 2.4370e+00, 1.0459e-01, + 1DIAGNOSTIC, 24, -9.606252690843e-01, 2.116586308944e-05, 2.5400e+00, 1.0296e-01, + 1DIAGNOSTIC, 25, -9.606043815002e-01, 1.896066144929e-05, 2.6370e+00, 9.6988e-02, + 1DIAGNOSTIC, 26, -9.607229932024e-01, 1.837740446341e-05, 2.7356e+00, 9.8618e-02, + 1DIAGNOSTIC, 27, -9.607034927273e-01, 1.587153083469e-05, 2.8353e+00, 9.9687e-02, + 1DIAGNOSTIC, 28, -9.608081291512e-01, 1.507033674789e-05, 2.9321e+00, 9.6819e-02, + 1DIAGNOSTIC, 29, -9.607898404026e-01, 1.270145620363e-05, 3.0358e+00, 1.0370e-01, + 1DIAGNOSTIC, 30, -9.608245769219e-01, 1.142791499152e-05, 3.1387e+00, 1.0287e-01, + 1DIAGNOSTIC, 31, -9.608069072703e-01, 8.930468610981e-06, 3.2427e+00, 1.0408e-01, + 1DIAGNOSTIC, 32, -9.608918682889e-01, 8.193931215136e-06, 3.3531e+00, 1.1040e-01, + 1DIAGNOSTIC, 33, -9.608762094219e-01, 6.512145862031e-06, 3.4503e+00, 9.7179e-02, + 1DIAGNOSTIC, 34, -9.609334430526e-01, 6.195930461736e-06, 3.5451e+00, 9.4738e-02, + 1DIAGNOSTIC, 35, -9.609206956291e-01, 5.088777960759e-06, 3.6466e+00, 1.0159e-01, + 1DIAGNOSTIC, 36, -9.609662933433e-01, 5.021395811957e-06, 3.7496e+00, 1.0301e-01, + 1DIAGNOSTIC, 37, -9.609571709374e-01, 4.298268883273e-06, 3.8500e+00, 1.0030e-01, + 1DIAGNOSTIC, 38, -9.610612853036e-01, 4.927806510877e-06, 3.9466e+00, 9.6650e-02, + 1DIAGNOSTIC, 39, -9.610537487918e-01, 4.915544544640e-06, 4.0502e+00, 1.0357e-01, + 1DIAGNOSTIC, 40, -9.610838288437e-01, 5.013136225394e-06, 4.1468e+00, 9.6599e-02, + 1DIAGNOSTIC, 41, -9.610885046396e-01, 4.597838700562e-06, 4.2493e+00, 1.0258e-01, + 1DIAGNOSTIC, 42, -9.611045455101e-01, 4.557117523184e-06, 4.3532e+00, 1.0389e-01, + 1DIAGNOSTIC, 43, -9.611130197154e-01, 4.087663116353e-06, 4.4525e+00, 9.9307e-02, + 1DIAGNOSTIC, 44, -9.611069217874e-01, 3.668174859493e-06, 4.5479e+00, 9.5306e-02, + 1DIAGNOSTIC, 45, -9.611310639489e-01, 3.063457710725e-06, 4.6518e+00, 1.0396e-01, + 1DIAGNOSTIC, 46, -9.611162680388e-01, 2.462283176654e-06, 4.7503e+00, 9.8452e-02, + 1DIAGNOSTIC, 47, -9.611420640088e-01, 1.808506655824e-06, 4.8519e+00, 1.0164e-01, + 1DIAGNOSTIC, 48, -9.611280582777e-01, 1.631343203867e-06, 4.9524e+00, 1.0048e-01, + 1DIAGNOSTIC, 49, -9.611596591930e-01, 1.514206699391e-06, 5.0561e+00, 1.0372e-01, + 1DIAGNOSTIC, 50, -9.611408397914e-01, 1.381379778672e-06, 5.1606e+00, 1.0446e-01, + 1DIAGNOSTIC, 51, -9.611750075369e-01, 1.410476482337e-06, 5.2651e+00, 1.0455e-01, + 1DIAGNOSTIC, 52, -9.611592517543e-01, 1.359510544110e-06, 5.3691e+00, 1.0401e-01, + 1DIAGNOSTIC, 53, -9.611983698080e-01, 1.510052109837e-06, 5.4793e+00, 1.1016e-01, + 1DIAGNOSTIC, 54, -9.611819540140e-01, 1.435258174788e-06, 5.5842e+00, 1.0488e-01, + 1DIAGNOSTIC, 55, -9.612246955825e-01, 1.649968349119e-06, 5.6833e+00, 9.9165e-02, + 1DIAGNOSTIC, 56, -9.612019447574e-01, 1.546643397354e-06, 5.7876e+00, 1.0422e-01, + 1DIAGNOSTIC, 57, -9.612501321067e-01, 1.745488108905e-06, 5.8845e+00, 9.6896e-02, + 1DIAGNOSTIC, 58, -9.612213270192e-01, 1.593858896809e-06, 5.9794e+00, 9.4956e-02, + 1DIAGNOSTIC, 59, -9.612742080174e-01, 1.780561173628e-06, 6.0811e+00, 1.0172e-01, + 1DIAGNOSTIC, 60, -9.612403666291e-01, 1.570579969960e-06, 6.1825e+00, 1.0137e-01, + 1DIAGNOSTIC, 61, -9.612965759744e-01, 1.716164751760e-06, 6.2796e+00, 9.7086e-02, + 1DIAGNOSTIC, 62, -9.612593718198e-01, 1.477337607563e-06, 6.3792e+00, 9.9665e-02, + 1DIAGNOSTIC, 63, -9.612435577262e-01, 1.272232743942e-06, 6.4786e+00, 9.9319e-02, + 1DIAGNOSTIC, 64, -9.612006104921e-01, 7.225765844172e-07, 6.5843e+00, 1.0571e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.187080531506e-01, 1.797693134862e+308, 7.4608e+00, 8.7650e-01, + 1DIAGNOSTIC, 2, -9.227324000750e-01, 1.797693134862e+308, 8.1445e+00, 6.8368e-01, + 1DIAGNOSTIC, 3, -9.268876071150e-01, 1.797693134862e+308, 8.8207e+00, 6.7629e-01, + 1DIAGNOSTIC, 4, -9.296625155536e-01, 1.797693134862e+308, 9.4994e+00, 6.7870e-01, + 1DIAGNOSTIC, 5, -9.319463291843e-01, 1.797693134862e+308, 1.0163e+01, 6.6314e-01, + 1DIAGNOSTIC, 6, -9.339054627370e-01, 1.797693134862e+308, 1.0855e+01, 6.9222e-01, + 1DIAGNOSTIC, 7, -9.355190904634e-01, 1.797693134862e+308, 1.1531e+01, 6.7632e-01, + 1DIAGNOSTIC, 8, -9.370090752935e-01, 1.797693134862e+308, 1.2226e+01, 6.9488e-01, + 1DIAGNOSTIC, 9, -9.381484153008e-01, 1.797693134862e+308, 1.2890e+01, 6.6407e-01, + 1DIAGNOSTIC, 10, -9.391965378090e-01, 1.349519047859e-03, 1.3550e+01, 6.6016e-01, + 1DIAGNOSTIC, 11, -9.399927595782e-01, 1.017414580234e-03, 1.4214e+01, 6.6340e-01, + 1DIAGNOSTIC, 12, -9.407006276044e-01, 7.682521122120e-04, 1.4884e+01, 6.7070e-01, + 1DIAGNOSTIC, 13, -9.412593678678e-01, 5.978626310362e-04, 1.5553e+01, 6.6861e-01, + 1DIAGNOSTIC, 14, -9.418765149611e-01, 4.708109821654e-04, 1.6225e+01, 6.7155e-01, + 1DIAGNOSTIC, 15, -9.423313607440e-01, 3.728432120148e-04, 1.6915e+01, 6.9093e-01, + 1DIAGNOSTIC, 16, -9.427628247412e-01, 2.981412877604e-04, 1.7589e+01, 6.7355e-01, + 1DIAGNOSTIC, 17, -9.432859694945e-01, 2.427584072669e-04, 1.8267e+01, 6.7807e-01, + 1DIAGNOSTIC, 18, -9.436645117288e-01, 2.024462471347e-04, 1.8951e+01, 6.8351e-01, + 1DIAGNOSTIC, 19, -9.441305845012e-01, 1.731316231031e-04, 1.9610e+01, 6.5968e-01, + 1DIAGNOSTIC, 20, -9.444667375278e-01, 1.515809941769e-04, 2.0289e+01, 6.7912e-01, + 1DIAGNOSTIC, 21, -9.447927786920e-01, 1.341575848440e-04, 2.0960e+01, 6.7082e-01, + 1DIAGNOSTIC, 22, -9.451108976432e-01, 1.199375137674e-04, 2.1643e+01, 6.8276e-01, + 1DIAGNOSTIC, 23, -9.454240020176e-01, 1.071687464860e-04, 2.2309e+01, 6.6561e-01, + 1DIAGNOSTIC, 24, -9.457316310396e-01, 9.710813051837e-05, 2.2983e+01, 6.7460e-01, + 1DIAGNOSTIC, 25, -9.460401927216e-01, 8.801163886117e-05, 2.3655e+01, 6.7150e-01, + 1DIAGNOSTIC, 26, -9.463367688381e-01, 7.981472405731e-05, 2.4328e+01, 6.7288e-01, + 1DIAGNOSTIC, 27, -9.466294256385e-01, 7.389086835081e-05, 2.5005e+01, 6.7760e-01, + 1DIAGNOSTIC, 28, -9.469094744126e-01, 6.852946416808e-05, 2.5675e+01, 6.7037e-01, + 1DIAGNOSTIC, 29, -9.471933773861e-01, 6.491876947647e-05, 2.6344e+01, 6.6866e-01, + 1DIAGNOSTIC, 30, -9.474748760615e-01, 6.166341608198e-05, 2.7026e+01, 6.8157e-01, + 1DIAGNOSTIC, 31, -9.477451359902e-01, 5.862432846459e-05, 2.7701e+01, 6.7500e-01, + 1DIAGNOSTIC, 32, -9.480035984340e-01, 5.569868160943e-05, 2.8388e+01, 6.8723e-01, + 1DIAGNOSTIC, 33, -9.482602555523e-01, 5.291925788696e-05, 2.9059e+01, 6.7154e-01, + 1DIAGNOSTIC, 34, -9.484959730451e-01, 5.013625387998e-05, 2.9734e+01, 6.7451e-01, + 1DIAGNOSTIC, 35, -9.487247289912e-01, 4.741808703536e-05, 3.0401e+01, 6.6738e-01, + 1DIAGNOSTIC, 36, -9.489443716526e-01, 4.470515200786e-05, 3.1069e+01, 6.6732e-01, + 1DIAGNOSTIC, 37, -9.491498966968e-01, 4.198546566197e-05, 3.1734e+01, 6.6531e-01, + 1DIAGNOSTIC, 38, -9.493453501737e-01, 3.922262558582e-05, 3.2394e+01, 6.5986e-01, + 1DIAGNOSTIC, 39, -9.495314067297e-01, 3.653505831150e-05, 3.3071e+01, 6.7674e-01, + 1DIAGNOSTIC, 40, -9.497087445455e-01, 3.399511001302e-05, 3.3745e+01, 6.7412e-01, + 1DIAGNOSTIC, 41, -9.498754274514e-01, 3.158673393778e-05, 3.4419e+01, 6.7427e-01, + 1DIAGNOSTIC, 42, -9.500334452418e-01, 2.930404748499e-05, 3.5099e+01, 6.8007e-01, + 1DIAGNOSTIC, 43, -9.501838285911e-01, 2.722195045744e-05, 3.5778e+01, 6.7874e-01, + 1DIAGNOSTIC, 44, -9.503264105164e-01, 2.526336177397e-05, 3.6481e+01, 7.0297e-01, + 1DIAGNOSTIC, 45, -9.504528347619e-01, 2.339379556459e-05, 3.7160e+01, 6.7919e-01, + 1DIAGNOSTIC, 46, -9.505915640518e-01, 2.175711420529e-05, 3.7846e+01, 6.8609e-01, + 1DIAGNOSTIC, 47, -9.507144189776e-01, 2.025100910818e-05, 3.8522e+01, 6.7620e-01, + 1DIAGNOSTIC, 48, -9.508318377475e-01, 1.887278524745e-05, 3.9190e+01, 6.6749e-01, + 1DIAGNOSTIC, 49, -9.509385871810e-01, 1.758480772084e-05, 3.9867e+01, 6.7697e-01, + 1DIAGNOSTIC, 50, -9.510442250114e-01, 1.641056804892e-05, 4.0537e+01, 6.7035e-01, + 1DIAGNOSTIC, 51, -9.511443188351e-01, 1.532489216610e-05, 4.1198e+01, 6.6103e-01, + 1DIAGNOSTIC, 52, -9.512286534397e-01, 1.425473355796e-05, 4.1880e+01, 6.8222e-01, + 1DIAGNOSTIC, 53, -9.513188486494e-01, 1.326780795234e-05, 4.2561e+01, 6.8081e-01, + 1DIAGNOSTIC, 54, -9.513953403000e-01, 1.230896444354e-05, 4.3243e+01, 6.8223e-01, + 1DIAGNOSTIC, 55, -9.514809456244e-01, 1.140453021458e-05, 4.3913e+01, 6.6948e-01, + 1DIAGNOSTIC, 56, -9.515543164242e-01, 1.061741275232e-05, 4.4591e+01, 6.7822e-01, + 1DIAGNOSTIC, 57, -9.516248113237e-01, 9.901057835309e-06, 4.5261e+01, 6.6944e-01, + 1DIAGNOSTIC, 58, -9.516948546165e-01, 9.273616975555e-06, 4.5929e+01, 6.6830e-01, + 1DIAGNOSTIC, 59, -9.517603492980e-01, 8.695042905776e-06, 4.6620e+01, 6.9154e-01, + 1DIAGNOSTIC, 60, -9.518200726885e-01, 8.169238474267e-06, 4.7314e+01, 6.9408e-01, + 1DIAGNOSTIC, 61, -9.518754523917e-01, 7.684285415463e-06, 4.7985e+01, 6.7048e-01, + 1DIAGNOSTIC, 62, -9.519264970249e-01, 7.173926044025e-06, 4.8661e+01, 6.7636e-01, + 1DIAGNOSTIC, 63, -9.519815688425e-01, 6.725182417001e-06, 4.9345e+01, 6.8406e-01, + 1DIAGNOSTIC, 64, -9.520316601892e-01, 6.276778562790e-06, 5.0020e+01, 6.7479e-01, + 1DIAGNOSTIC, 65, -9.520739312258e-01, 5.870266590092e-06, 5.0692e+01, 6.7144e-01, + 1DIAGNOSTIC, 66, -9.521079888922e-01, 5.441987070441e-06, 5.1371e+01, 6.7977e-01, + 1DIAGNOSTIC, 67, -9.521420870301e-01, 5.012833371964e-06, 5.2052e+01, 6.8042e-01, + 1DIAGNOSTIC, 68, -9.521716460664e-01, 4.593079420346e-06, 5.2722e+01, 6.7065e-01, + 1DIAGNOSTIC, 69, -9.522025623051e-01, 4.202324712444e-06, 5.3404e+01, 6.8190e-01, + 1DIAGNOSTIC, 70, -9.522289789800e-01, 3.827431385998e-06, 5.4080e+01, 6.7553e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.059259448883e-01, 1.797693134862e+308, 5.9794e+01, 5.7139e+00, + 1DIAGNOSTIC, 2, -9.094168161308e-01, 1.797693134862e+308, 6.5196e+01, 5.4026e+00, + 1DIAGNOSTIC, 3, -9.124878536759e-01, 1.797693134862e+308, 7.0597e+01, 5.4002e+00, + 1DIAGNOSTIC, 4, -9.154906645125e-01, 1.797693134862e+308, 7.5994e+01, 5.3978e+00, + 1DIAGNOSTIC, 5, -9.181960324634e-01, 1.797693134862e+308, 8.1376e+01, 5.3817e+00, + 1DIAGNOSTIC, 6, -9.204607311215e-01, 1.797693134862e+308, 8.6768e+01, 5.3915e+00, + 1DIAGNOSTIC, 7, -9.223358037775e-01, 1.797693134862e+308, 9.2216e+01, 5.4482e+00, + 1DIAGNOSTIC, 8, -9.239121023514e-01, 1.797693134862e+308, 9.7619e+01, 5.4027e+00, + 1DIAGNOSTIC, 9, -9.251510002898e-01, 1.797693134862e+308, 1.0305e+02, 5.4330e+00, + 1DIAGNOSTIC, 10, -9.263352472367e-01, 1.419500514272e-03, 1.0844e+02, 5.3838e+00, + 1DIAGNOSTIC, 11, -9.272867403218e-01, 1.120054598536e-03, 1.1390e+02, 5.4605e+00, + 1DIAGNOSTIC, 12, -9.282747010946e-01, 8.849288448132e-04, 1.1930e+02, 5.4073e+00, + 1DIAGNOSTIC, 13, -9.289584157902e-01, 6.946038974854e-04, 1.2472e+02, 5.4134e+00, + 1DIAGNOSTIC, 14, -9.297480791134e-01, 5.514953745168e-04, 1.3016e+02, 5.4389e+00, + 1DIAGNOSTIC, 15, -9.305317763964e-01, 4.483514431043e-04, 1.3560e+02, 5.4429e+00, + 1DIAGNOSTIC, 16, -9.311850801168e-01, 3.727317107475e-04, 1.4102e+02, 5.4265e+00, + 1DIAGNOSTIC, 17, -9.318582003718e-01, 3.175867740173e-04, 1.4647e+02, 5.4416e+00, + 1DIAGNOSTIC, 18, -9.325644746113e-01, 2.781135421517e-04, 1.5192e+02, 5.4534e+00, + 1DIAGNOSTIC, 19, -9.333052503982e-01, 2.488533427892e-04, 1.5740e+02, 5.4805e+00, + 1DIAGNOSTIC, 20, -9.340610213675e-01, 2.290293923254e-04, 1.6281e+02, 5.4122e+00, + 1DIAGNOSTIC, 21, -9.347231747887e-01, 2.131784543891e-04, 1.6827e+02, 5.4545e+00, + 1DIAGNOSTIC, 22, -9.353084657978e-01, 2.008288635234e-04, 1.7369e+02, 5.4228e+00, + 1DIAGNOSTIC, 23, -9.358207939750e-01, 1.866627027393e-04, 1.7916e+02, 5.4660e+00, + 1DIAGNOSTIC, 24, -9.362622630005e-01, 1.718317887660e-04, 1.8456e+02, 5.4001e+00, + 1DIAGNOSTIC, 25, -9.366436305133e-01, 1.563154495351e-04, 1.9000e+02, 5.4489e+00, + 1DIAGNOSTIC, 26, -9.369732080628e-01, 1.388743006607e-04, 1.9546e+02, 5.4538e+00, + 1DIAGNOSTIC, 27, -9.372633575845e-01, 1.205868114858e-04, 2.0089e+02, 5.4358e+00, + 1DIAGNOSTIC, 28, -9.375187592784e-01, 1.027508817570e-04, 2.0635e+02, 5.4508e+00, + 1DIAGNOSTIC, 29, -9.377425802877e-01, 8.660859331990e-05, 2.1180e+02, 5.4516e+00, + 1DIAGNOSTIC, 30, -9.379400979438e-01, 7.308065848200e-05, 2.1719e+02, 5.3921e+00, + 1DIAGNOSTIC, 31, -9.381160031922e-01, 6.179068588749e-05, 2.2263e+02, 5.4424e+00, + 1DIAGNOSTIC, 32, -9.382699897447e-01, 5.243658378293e-05, 2.2806e+02, 5.4309e+00, + 1DIAGNOSTIC, 33, -9.384147109783e-01, 4.479251180797e-05, 2.3351e+02, 5.4440e+00, + 1DIAGNOSTIC, 34, -9.385434296076e-01, 3.850626175068e-05, 2.3892e+02, 5.4100e+00, + 1DIAGNOSTIC, 35, -9.386567627615e-01, 3.328147317281e-05, 2.4440e+02, 5.4865e+00, + 1DIAGNOSTIC, 36, -9.387658738130e-01, 2.895180008082e-05, 2.4981e+02, 5.4085e+00, + 1DIAGNOSTIC, 37, -9.388634427964e-01, 2.534929204413e-05, 2.5527e+02, 5.4608e+00, + 1DIAGNOSTIC, 38, -9.389485353129e-01, 2.230890043087e-05, 2.6070e+02, 5.4295e+00, + 1DIAGNOSTIC, 39, -9.390318451218e-01, 1.975647108390e-05, 2.6615e+02, 5.4474e+00, + 1DIAGNOSTIC, 40, -9.391058518384e-01, 1.757365740746e-05, 2.7157e+02, 5.4260e+00, + 1DIAGNOSTIC, 41, -9.391725856430e-01, 1.568240911625e-05, 2.7709e+02, 5.5192e+00, + 1DIAGNOSTIC, 42, -9.392360376582e-01, 1.401899891043e-05, 2.8257e+02, 5.4710e+00, + 1DIAGNOSTIC, 43, -9.392988754223e-01, 1.262251220797e-05, 2.8798e+02, 5.4175e+00, + 1DIAGNOSTIC, 44, -9.393545732735e-01, 1.141743911607e-05, 2.9343e+02, 5.4507e+00, + 1DIAGNOSTIC, 45, -9.394048177756e-01, 1.033804447093e-05, 2.9888e+02, 5.4460e+00, + 1DIAGNOSTIC, 46, -9.394525667849e-01, 9.412876068725e-06, 3.0428e+02, 5.3998e+00, + 1DIAGNOSTIC, 47, -9.394966337578e-01, 8.601175713167e-06, 3.0972e+02, 5.4453e+00, + 1DIAGNOSTIC, 48, -9.395373408292e-01, 7.852728655670e-06, 3.1515e+02, 5.4230e+00, + 1DIAGNOSTIC, 49, -9.395791182931e-01, 7.215354017924e-06, 3.2057e+02, 5.4271e+00, + 1DIAGNOSTIC, 50, -9.396178714814e-01, 6.653780419405e-06, 3.2600e+02, 5.4265e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.055107518396e-01, 1.797693134862e+308, 3.7082e+02, 4.4814e+01, + 1DIAGNOSTIC, 2, -9.066335631408e-01, 1.797693134862e+308, 4.1511e+02, 4.4297e+01, + 1DIAGNOSTIC, 3, -9.081471201610e-01, 1.797693134862e+308, 4.5916e+02, 4.4043e+01, + 1DIAGNOSTIC, 4, -9.096521257343e-01, 1.797693134862e+308, 5.0365e+02, 4.4496e+01, + 1DIAGNOSTIC, 5, -9.111324382670e-01, 1.797693134862e+308, 5.4775e+02, 4.4099e+01, + 1DIAGNOSTIC, 6, -9.126464761831e-01, 1.797693134862e+308, 5.9225e+02, 4.4495e+01, + 1DIAGNOSTIC, 7, -9.141389896159e-01, 1.797693134862e+308, 6.3636e+02, 4.4119e+01, + 1DIAGNOSTIC, 8, -9.155586030585e-01, 1.797693134862e+308, 6.8043e+02, 4.4068e+01, + 1DIAGNOSTIC, 9, -9.168716625357e-01, 1.797693134862e+308, 7.2457e+02, 4.4142e+01, + 1DIAGNOSTIC, 10, -9.180585128207e-01, 9.083394083093e-04, 7.6940e+02, 4.4823e+01, + 1DIAGNOSTIC, 11, -9.191283485260e-01, 8.108673339240e-04, 8.1382e+02, 4.4422e+01, + 1DIAGNOSTIC, 12, -9.199940811043e-01, 7.080370601268e-04, 8.5836e+02, 4.4543e+01, + 1DIAGNOSTIC, 13, -9.207596865818e-01, 6.113202782597e-04, 9.0294e+02, 4.4577e+01, + 1DIAGNOSTIC, 14, -9.214553689197e-01, 5.215130537259e-04, 9.4793e+02, 4.4988e+01, + 1DIAGNOSTIC, 15, -9.221109674592e-01, 4.400345951158e-04, 9.9457e+02, 4.6641e+01, + 1DIAGNOSTIC, 16, -9.226303505568e-01, 3.675906777964e-04, 1.0415e+03, 4.6964e+01, + 1DIAGNOSTIC, 17, -9.231124738591e-01, 3.057212754183e-04, 1.0885e+03, 4.6948e+01, + 1DIAGNOSTIC, 18, -9.235562950735e-01, 2.544597039649e-04, 1.1356e+03, 4.7081e+01, + 1DIAGNOSTIC, 19, -9.239715679009e-01, 2.130639757566e-04, 1.1829e+03, 4.7343e+01, + 1DIAGNOSTIC, 20, -9.243694911323e-01, 1.804194242350e-04, 1.2302e+03, 4.7335e+01, + Elapsed time (stage 2): 1231 + + +Total elapsed time: 1284 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:23 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:23 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:26 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:30 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:33 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:33 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8491 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:34 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:37 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:37 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8542 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:37 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:40 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8588 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:40 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8593 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:40 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:44 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:44 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:44 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:45 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:46 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:48 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:48 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:49 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:50 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:02 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:13 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC002 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:13 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC002 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:14 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC002 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:14 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9186 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:16 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:16 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9226 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:17 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:17 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC002_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 71.400 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/logs/proc_func_18-03-2024-4360.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:22 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC002 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/QC/sub-PNC002_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC002* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 71.450 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC002_ses-01 +========================reprocessing without filter=================== +sub-PNC002_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC002 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC002 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC002 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC002 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:26 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:26 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:12:32 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:14:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:14:54 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.63 (mm) at sub-brick 190 +++ Max delta displ in automask = 0.33 (mm) at sub-brick 134 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:27:48 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:28:06 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:30:17 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:32:26 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:34:39 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.825 -2.780 2.798 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.928 -4.965 5.134 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:39:27 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:39:54 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55e980fdf6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.102, 46.3661, -138.053] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e980e56730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e980ff6320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55e980fe2fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [73.8093, 106.5, -144.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e980fe8e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e9817f3230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55e9817f15c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.102, 46.3661, -138.053] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e980fe53f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e98231d450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55e9817efda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [73.8093, 106.5, -144.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e980fec360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e982b17780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.982549911237e-01, 1.797693134862e+308, 4.2558e-02, 4.2558e-02, + 2DIAGNOSTIC, 2, -5.992568480460e-01, 1.797693134862e+308, 4.3875e-02, 1.3170e-03, + 2DIAGNOSTIC, 3, -6.003413346719e-01, 1.797693134862e+308, 4.5193e-02, 1.3180e-03, + 2DIAGNOSTIC, 4, -6.015306716831e-01, 1.797693134862e+308, 4.6567e-02, 1.3740e-03, + 2DIAGNOSTIC, 5, -6.032135220839e-01, 1.797693134862e+308, 4.8150e-02, 1.5829e-03, + 2DIAGNOSTIC, 6, -6.049846657795e-01, 1.797693134862e+308, 4.9704e-02, 1.5540e-03, + 2DIAGNOSTIC, 7, -6.065896891319e-01, 1.797693134862e+308, 5.1328e-02, 1.6239e-03, + 2DIAGNOSTIC, 8, -6.078499824315e-01, 1.797693134862e+308, 5.2931e-02, 1.6029e-03, + 2DIAGNOSTIC, 9, -6.087141289439e-01, 1.797693134862e+308, 5.4543e-02, 1.6119e-03, + 2DIAGNOSTIC, 10, -6.089945258530e-01, 1.270317797241e-03, 5.6380e-02, 1.8370e-03, + 2DIAGNOSTIC, 11, -6.095536639111e-01, 1.085561201560e-03, 5.7898e-02, 1.5180e-03, + 2DIAGNOSTIC, 12, -6.135617880154e-01, 1.029381248942e-03, 6.0126e-02, 2.2280e-03, + 2DIAGNOSTIC, 13, -6.136615509661e-01, 9.277836675254e-04, 6.1642e-02, 1.5161e-03, + 2DIAGNOSTIC, 14, -6.137369472126e-01, 8.003545343496e-04, 6.3180e-02, 1.5380e-03, + 2DIAGNOSTIC, 15, -6.137725627205e-01, 6.723064908513e-04, 6.4944e-02, 1.7638e-03, + 2DIAGNOSTIC, 16, -6.138521449099e-01, 5.519503743068e-04, 6.7186e-02, 2.2428e-03, + 2DIAGNOSTIC, 17, -6.139028688965e-01, 4.383180005882e-04, 6.8686e-02, 1.4999e-03, + 2DIAGNOSTIC, 18, -6.140547979599e-01, 3.330422970761e-04, 7.0222e-02, 1.5359e-03, + 2DIAGNOSTIC, 19, -6.141222766631e-01, 2.326452074475e-04, 7.1722e-02, 1.4999e-03, + 2DIAGNOSTIC, 20, -6.141541735340e-01, 1.289973863905e-04, 7.3430e-02, 1.7080e-03, + 2DIAGNOSTIC, 21, -6.141782248469e-01, 3.391832728609e-05, 7.5651e-02, 2.2209e-03, + 2DIAGNOSTIC, 22, -6.141904624519e-01, 2.973662312545e-05, 7.7209e-02, 1.5578e-03, + 2DIAGNOSTIC, 23, -6.142969830183e-01, 2.739844592584e-05, 7.8944e-02, 1.7350e-03, + 2DIAGNOSTIC, 24, -6.143909537842e-01, 2.604013937123e-05, 8.0702e-02, 1.7581e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -2.876295403309e-01, 1.797693134862e+308, 1.2509e-01, 4.4385e-02, + 2DIAGNOSTIC, 2, -2.881994369137e-01, 1.797693134862e+308, 1.2767e-01, 2.5871e-03, + 2DIAGNOSTIC, 3, -2.904303619369e-01, 1.797693134862e+308, 1.3019e-01, 2.5170e-03, + 2DIAGNOSTIC, 4, -2.934520235598e-01, 1.797693134862e+308, 1.3282e-01, 2.6281e-03, + 2DIAGNOSTIC, 5, -2.978017711983e-01, 1.797693134862e+308, 1.3501e-01, 2.1868e-03, + 2DIAGNOSTIC, 6, -3.003397249838e-01, 1.797693134862e+308, 1.3697e-01, 1.9660e-03, + 2DIAGNOSTIC, 7, -3.022689830552e-01, 1.797693134862e+308, 1.3895e-01, 1.9751e-03, + 2DIAGNOSTIC, 8, -3.053394889268e-01, 1.797693134862e+308, 1.4098e-01, 2.0292e-03, + 2DIAGNOSTIC, 9, -3.476405742030e-01, 1.797693134862e+308, 1.4331e-01, 2.3341e-03, + 2DIAGNOSTIC, 10, -3.781719408605e-01, 1.448069226267e-02, 1.4712e-01, 3.8080e-03, + 2DIAGNOSTIC, 11, -3.799141533324e-01, 1.721767333626e-02, 1.5082e-01, 3.6988e-03, + 2DIAGNOSTIC, 12, -3.819544574458e-01, 1.815352210232e-02, 1.5303e-01, 2.2140e-03, + 2DIAGNOSTIC, 13, -3.848226133613e-01, 1.765223445216e-02, 1.5527e-01, 2.2402e-03, + 2DIAGNOSTIC, 14, -3.881571030940e-01, 1.597370710605e-02, 1.5752e-01, 2.2459e-03, + 2DIAGNOSTIC, 15, -3.906683000670e-01, 1.345580149822e-02, 1.5985e-01, 2.3341e-03, + 2DIAGNOSTIC, 16, -3.936341144676e-01, 1.039252183554e-02, 1.6217e-01, 2.3160e-03, + 2DIAGNOSTIC, 17, -4.021756130599e-01, 7.341763273975e-03, 1.6450e-01, 2.3301e-03, + 2DIAGNOSTIC, 18, -4.206354711859e-01, 4.936152444439e-03, 1.6713e-01, 2.6309e-03, + 2DIAGNOSTIC, 19, -4.308343322213e-01, 4.563579475304e-03, 1.6941e-01, 2.2810e-03, + 2DIAGNOSTIC, 20, -4.371125440111e-01, 5.288011086190e-03, 1.7203e-01, 2.6200e-03, + 2DIAGNOSTIC, 21, -4.423399415555e-01, 5.707053246186e-03, 1.7464e-01, 2.6159e-03, + 2DIAGNOSTIC, 22, -4.469130106166e-01, 5.779824265174e-03, 1.7704e-01, 2.3901e-03, + 2DIAGNOSTIC, 23, -4.535626356744e-01, 5.613538628114e-03, 1.7935e-01, 2.3150e-03, + 2DIAGNOSTIC, 24, -4.601302256784e-01, 5.248908996052e-03, 1.8169e-01, 2.3358e-03, + 2DIAGNOSTIC, 25, -4.736060847403e-01, 4.913895487704e-03, 1.8469e-01, 3.0019e-03, + 2DIAGNOSTIC, 26, -4.790404132250e-01, 4.388332712211e-03, 1.8747e-01, 2.7869e-03, + 2DIAGNOSTIC, 27, -4.833268334899e-01, 3.844837341508e-03, 1.9034e-01, 2.8639e-03, + 2DIAGNOSTIC, 28, -4.932795136583e-01, 3.730135660767e-03, 1.9292e-01, 2.5780e-03, + 2DIAGNOSTIC, 29, -5.182209812159e-01, 4.139818540905e-03, 1.9557e-01, 2.6569e-03, + 2DIAGNOSTIC, 30, -5.554204627533e-01, 5.132775031216e-03, 2.0060e-01, 5.0242e-03, + 2DIAGNOSTIC, 31, -5.555299752203e-01, 5.663284042892e-03, 2.0312e-01, 2.5239e-03, + 2DIAGNOSTIC, 32, -5.586700015650e-01, 5.803426227595e-03, 2.0546e-01, 2.3401e-03, + 2DIAGNOSTIC, 33, -5.609634990759e-01, 5.580411973724e-03, 2.0785e-01, 2.3890e-03, + 2DIAGNOSTIC, 34, -5.639303642095e-01, 5.023964762443e-03, 2.1084e-01, 2.9871e-03, + 2DIAGNOSTIC, 35, -5.708775225710e-01, 4.417284045653e-03, 2.1585e-01, 5.0130e-03, + 2DIAGNOSTIC, 36, -5.709209954382e-01, 3.544229383728e-03, 2.1798e-01, 2.1300e-03, + 2DIAGNOSTIC, 37, -5.710230891543e-01, 2.490959641746e-03, 2.2012e-01, 2.1360e-03, + 2DIAGNOSTIC, 38, -5.712493238617e-01, 1.448149531375e-03, 2.2226e-01, 2.1400e-03, + 2DIAGNOSTIC, 39, -5.716022734007e-01, 7.430056921717e-04, 2.2444e-01, 2.1801e-03, + 2DIAGNOSTIC, 40, -5.721298253279e-01, 6.226498000018e-04, 2.2662e-01, 2.1839e-03, + 2DIAGNOSTIC, 41, -5.729207716898e-01, 4.643214812209e-04, 2.2877e-01, 2.1501e-03, + 2DIAGNOSTIC, 42, -5.737605465683e-01, 3.332229520747e-04, 2.3097e-01, 2.1951e-03, + 2DIAGNOSTIC, 43, -5.747202070270e-01, 2.261195212957e-04, 2.3318e-01, 2.2120e-03, + 2DIAGNOSTIC, 44, -5.757257160481e-01, 1.576257460339e-04, 2.3537e-01, 2.1930e-03, + 2DIAGNOSTIC, 45, -5.764046050190e-01, 1.839070060008e-04, 2.3770e-01, 2.3320e-03, + 2DIAGNOSTIC, 46, -5.777406982041e-01, 2.099100681977e-04, 2.4057e-01, 2.8710e-03, + 2DIAGNOSTIC, 47, -5.787299857744e-01, 2.286006768828e-04, 2.4282e-01, 2.2478e-03, + 2DIAGNOSTIC, 48, -5.799636795237e-01, 2.431168339850e-04, 2.4511e-01, 2.2879e-03, + 2DIAGNOSTIC, 49, -5.873732933433e-01, 3.303958004041e-04, 2.4736e-01, 2.2511e-03, + 2DIAGNOSTIC, 50, -5.927553454779e-01, 4.512446979534e-04, 2.5105e-01, 3.6881e-03, + 2DIAGNOSTIC, 51, -5.927804100306e-01, 5.319988809994e-04, 2.5329e-01, 2.2459e-03, + 2DIAGNOSTIC, 52, -5.957206960333e-01, 6.036199680275e-04, 2.5548e-01, 2.1839e-03, + 2DIAGNOSTIC, 53, -5.967363170049e-01, 6.360386415826e-04, 2.5780e-01, 2.3220e-03, + 2DIAGNOSTIC, 54, -6.034626468402e-01, 6.899840055707e-04, 2.6145e-01, 3.6509e-03, + 2DIAGNOSTIC, 55, -6.295551309786e-01, 9.605354836160e-04, 2.6457e-01, 3.1190e-03, + 2DIAGNOSTIC, 56, -6.310349720037e-01, 1.150317041593e-03, 2.6943e-01, 4.8571e-03, + 2DIAGNOSTIC, 57, -6.316443960520e-01, 1.242792788267e-03, 2.7183e-01, 2.4071e-03, + 2DIAGNOSTIC, 58, -6.334784134226e-01, 1.245370576652e-03, 2.7421e-01, 2.3758e-03, + 2DIAGNOSTIC, 59, -6.349440371971e-01, 1.212571210933e-03, 2.7691e-01, 2.7001e-03, + 2DIAGNOSTIC, 60, -6.352019853152e-01, 1.115296480429e-03, 2.7917e-01, 2.2590e-03, + 2DIAGNOSTIC, 61, -6.352429980404e-01, 9.155570343418e-04, 2.8150e-01, 2.3291e-03, + 2DIAGNOSTIC, 62, -6.355505549827e-01, 6.707831564774e-04, 2.8383e-01, 2.3322e-03, + 2DIAGNOSTIC, 63, -6.359445537432e-01, 3.853387893140e-04, 2.8606e-01, 2.2280e-03, + 2DIAGNOSTIC, 64, -6.366081208713e-01, 1.330372677168e-04, 2.8930e-01, 3.2408e-03, + 2DIAGNOSTIC, 65, -6.365334852657e-01, 1.035754563232e-04, 2.9186e-01, 2.5649e-03, + 2DIAGNOSTIC, 66, -6.366353543855e-01, 7.919229219418e-05, 2.9423e-01, 2.3651e-03, + 2DIAGNOSTIC, 67, -6.372594143878e-01, 5.823302444102e-05, 2.9686e-01, 2.6309e-03, + 2DIAGNOSTIC, 68, -6.373305185165e-01, 4.759709639666e-05, 3.0002e-01, 3.1590e-03, + 2DIAGNOSTIC, 69, -6.375527853033e-01, 4.637075962610e-05, 3.0258e-01, 2.5570e-03, + 2DIAGNOSTIC, 70, -6.375510141494e-01, 4.291021736542e-05, 3.0484e-01, 2.2650e-03, + 2DIAGNOSTIC, 71, -6.376209277287e-01, 3.641626968888e-05, 3.0710e-01, 2.2552e-03, + 2DIAGNOSTIC, 72, -6.376376325962e-01, 2.906770327430e-05, 3.0934e-01, 2.2449e-03, + 2DIAGNOSTIC, 73, -6.376621740802e-01, 2.220089753589e-05, 3.1188e-01, 2.5420e-03, + 2DIAGNOSTIC, 74, -6.377878256524e-01, 1.938418307738e-05, 3.1446e-01, 2.5778e-03, + 2DIAGNOSTIC, 75, -6.380602049066e-01, 1.629411946105e-05, 3.1816e-01, 3.7029e-03, + 2DIAGNOSTIC, 76, -6.380584995934e-01, 1.235451752970e-05, 3.2063e-01, 2.4650e-03, + 2DIAGNOSTIC, 77, -6.380602336047e-01, 1.184150461948e-05, 3.2279e-01, 2.1639e-03, + 2DIAGNOSTIC, 78, -6.380627250356e-01, 1.074980287630e-05, 3.2503e-01, 2.2330e-03, + 2DIAGNOSTIC, 79, -6.380661373311e-01, 1.022891968448e-05, 3.2724e-01, 2.2130e-03, + 2DIAGNOSTIC, 80, -6.380705879951e-01, 8.759554759756e-06, 3.2946e-01, 2.2230e-03, + 2DIAGNOSTIC, 81, -6.380102453212e-01, 6.604832128883e-06, 3.3168e-01, 2.2199e-03, + 2DIAGNOSTIC, 82, -6.380217293831e-01, 4.152092434224e-06, 3.3400e-01, 2.3191e-03, + 2DIAGNOSTIC, 83, -6.380346224966e-01, 1.646498023079e-06, 3.3625e-01, 2.2511e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.766959892103e-01, 1.797693134862e+308, 4.0610e-01, 6.9845e-02, + 2DIAGNOSTIC, 2, -4.771462741323e-01, 1.797693134862e+308, 4.1818e-01, 1.2087e-02, + 2DIAGNOSTIC, 3, -4.776598420580e-01, 1.797693134862e+308, 4.2990e-01, 1.1713e-02, + 2DIAGNOSTIC, 4, -4.780856215216e-01, 1.797693134862e+308, 4.4158e-01, 1.1681e-02, + 2DIAGNOSTIC, 5, -4.786645086949e-01, 1.797693134862e+308, 4.5297e-01, 1.1395e-02, + 2DIAGNOSTIC, 6, -4.790608185823e-01, 1.797693134862e+308, 4.6530e-01, 1.2325e-02, + 2DIAGNOSTIC, 7, -4.801747451251e-01, 1.797693134862e+308, 4.9154e-01, 2.6239e-02, + 2DIAGNOSTIC, 8, -4.801809217733e-01, 1.797693134862e+308, 5.0388e-01, 1.2345e-02, + 2DIAGNOSTIC, 9, -4.802514330797e-01, 1.797693134862e+308, 5.1666e-01, 1.2775e-02, + 2DIAGNOSTIC, 10, -4.803432490960e-01, 5.475162455262e-04, 5.2944e-01, 1.2787e-02, + 2DIAGNOSTIC, 11, -4.804535307570e-01, 4.378995042902e-04, 5.4172e-01, 1.2271e-02, + 2DIAGNOSTIC, 12, -4.805709912362e-01, 3.346141764990e-04, 5.5397e-01, 1.2258e-02, + 2DIAGNOSTIC, 13, -4.807583643061e-01, 2.490915580653e-04, 5.6614e-01, 1.2166e-02, + 2DIAGNOSTIC, 14, -4.812268389781e-01, 1.913962434240e-04, 5.7815e-01, 1.2007e-02, + 2DIAGNOSTIC, 15, -4.815749051625e-01, 1.604135292626e-04, 5.9579e-01, 1.7642e-02, + 2DIAGNOSTIC, 16, -4.816941478856e-01, 1.366159774538e-04, 6.0961e-01, 1.3824e-02, + 2DIAGNOSTIC, 17, -4.817231045188e-01, 1.433240556711e-04, 6.2165e-01, 1.2042e-02, + 2DIAGNOSTIC, 18, -4.817664002093e-01, 1.379061280161e-04, 6.3602e-01, 1.4362e-02, + 2DIAGNOSTIC, 19, -4.820339048079e-01, 1.307209112222e-04, 6.4979e-01, 1.3772e-02, + 2DIAGNOSTIC, 20, -4.821840332934e-01, 1.190304171120e-04, 6.6191e-01, 1.2120e-02, + 2DIAGNOSTIC, 21, -4.825422917050e-01, 1.107979901171e-04, 6.7555e-01, 1.3646e-02, + 2DIAGNOSTIC, 22, -4.827723260788e-01, 1.024808640410e-04, 6.9106e-01, 1.5504e-02, + 2DIAGNOSTIC, 23, -4.828192674044e-01, 9.123572209430e-05, 7.0438e-01, 1.3323e-02, + 2DIAGNOSTIC, 24, -4.829696502163e-01, 8.761179046842e-05, 7.1694e-01, 1.2560e-02, + 2DIAGNOSTIC, 25, -4.834475218063e-01, 9.553849443505e-05, 7.3125e-01, 1.4310e-02, + 2DIAGNOSTIC, 26, -4.838014363683e-01, 1.044133629257e-04, 7.5039e-01, 1.9142e-02, + 2DIAGNOSTIC, 27, -4.839885744953e-01, 1.075751785634e-04, 7.6238e-01, 1.1987e-02, + 2DIAGNOSTIC, 28, -4.843290086047e-01, 1.086655093490e-04, 7.7414e-01, 1.1755e-02, + 2DIAGNOSTIC, 29, -4.844499058668e-01, 1.073880048874e-04, 7.8588e-01, 1.1741e-02, + 2DIAGNOSTIC, 30, -4.844789748615e-01, 9.942024981715e-05, 7.9610e-01, 1.0228e-02, + 2DIAGNOSTIC, 31, -4.845252601057e-01, 9.025448857997e-05, 8.1134e-01, 1.5231e-02, + 2DIAGNOSTIC, 32, -4.845889459119e-01, 7.869466798786e-05, 8.2241e-01, 1.1071e-02, + 2DIAGNOSTIC, 33, -4.846012629763e-01, 6.152326766324e-05, 8.3367e-01, 1.1265e-02, + 2DIAGNOSTIC, 34, -4.846436471704e-01, 4.281568952003e-05, 8.4867e-01, 1.5003e-02, + 2DIAGNOSTIC, 35, -4.846466308026e-01, 2.925198418664e-05, 8.5838e-01, 9.7029e-03, + 2DIAGNOSTIC, 36, -4.846485679891e-01, 1.958592227909e-05, 8.6939e-01, 1.1011e-02, + 2DIAGNOSTIC, 37, -4.846494407626e-01, 1.152827937360e-05, 8.8062e-01, 1.1232e-02, + 2DIAGNOSTIC, 38, -4.846453827625e-01, 8.056190517094e-06, 8.9171e-01, 1.1092e-02, + 2DIAGNOSTIC, 39, -4.846456652644e-01, 5.909883074209e-06, 9.0182e-01, 1.0110e-02, + 2DIAGNOSTIC, 40, -4.846416022240e-01, 3.745536119013e-06, 9.1173e-01, 9.9032e-03, + 2DIAGNOSTIC, 41, -4.846423867316e-01, 2.068816684447e-06, 9.2276e-01, 1.1030e-02, + 2DIAGNOSTIC, 42, -4.846438450376e-01, 1.265293929055e-06, 9.3478e-01, 1.2021e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.055913110246e-01, 1.797693134862e+308, 1.1336e+00, 1.9882e-01, + Elapsed time (stage 0): 1.1593e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.826624679126e-01, 1.797693134862e+308, 3.9220e-02, 3.9220e-02, + 2DIAGNOSTIC, 2, -9.846129857943e-01, 1.797693134862e+308, 4.0446e-02, 1.2262e-03, + 2DIAGNOSTIC, 3, -9.877822264050e-01, 1.797693134862e+308, 4.1729e-02, 1.2829e-03, + 2DIAGNOSTIC, 4, -9.919546699097e-01, 1.797693134862e+308, 4.2990e-02, 1.2610e-03, + 2DIAGNOSTIC, 5, -9.972512221976e-01, 1.797693134862e+308, 4.4448e-02, 1.4579e-03, + 2DIAGNOSTIC, 6, -1.003546539154e+00, 1.797693134862e+308, 4.5957e-02, 1.5090e-03, + 2DIAGNOSTIC, 7, -1.006104682391e+00, 1.797693134862e+308, 4.7258e-02, 1.3011e-03, + 2DIAGNOSTIC, 8, -1.009821832782e+00, 1.797693134862e+308, 4.8561e-02, 1.3030e-03, + 2DIAGNOSTIC, 9, -1.020812134238e+00, 1.797693134862e+308, 5.0048e-02, 1.4870e-03, + 2DIAGNOSTIC, 10, -1.047245375242e+00, 3.383769831372e-03, 5.2001e-02, 1.9529e-03, + 2DIAGNOSTIC, 11, -1.046969918959e+00, 3.616334178904e-03, 5.4146e-02, 2.1451e-03, + 2DIAGNOSTIC, 12, -1.049743404790e+00, 3.606734273978e-03, 5.5847e-02, 1.7011e-03, + 2DIAGNOSTIC, 13, -1.051177528856e+00, 3.379197304953e-03, 5.7370e-02, 1.5230e-03, + 2DIAGNOSTIC, 14, -1.050591475102e+00, 2.944233577163e-03, 5.9096e-02, 1.7262e-03, + 2DIAGNOSTIC, 15, -1.052646727643e+00, 2.428287599348e-03, 6.0863e-02, 1.7669e-03, + 2DIAGNOSTIC, 16, -1.052621994467e+00, 1.865971192077e-03, 6.2574e-02, 1.7109e-03, + 2DIAGNOSTIC, 17, -1.051866281799e+00, 1.236863352686e-03, 6.4128e-02, 1.5540e-03, + 2DIAGNOSTIC, 18, -1.051960532252e+00, 6.246988270238e-04, 6.5643e-02, 1.5152e-03, + 2DIAGNOSTIC, 19, -1.053831701183e+00, 1.978221662250e-04, 6.7163e-02, 1.5199e-03, + 2DIAGNOSTIC, 20, -1.055463413904e+00, 1.842724888637e-04, 6.8731e-02, 1.5678e-03, + 2DIAGNOSTIC, 21, -1.062323705410e+00, 2.402996596968e-04, 7.0713e-02, 1.9820e-03, + 2DIAGNOSTIC, 22, -1.065178118875e+00, 3.374619823058e-04, 7.2724e-02, 2.0111e-03, + 2DIAGNOSTIC, 23, -1.064899318651e+00, 4.091062629044e-04, 7.4721e-02, 1.9970e-03, + 2DIAGNOSTIC, 24, -1.064530950742e+00, 4.260153251399e-04, 7.6311e-02, 1.5898e-03, + 2DIAGNOSTIC, 25, -1.071363926384e+00, 4.990670745143e-04, 7.7779e-02, 1.4679e-03, + 2DIAGNOSTIC, 26, -1.074679833860e+00, 5.512076698878e-04, 7.9264e-02, 1.4851e-03, + 2DIAGNOSTIC, 27, -1.078958445646e+00, 5.827979102772e-04, 8.0985e-02, 1.7211e-03, + 2DIAGNOSTIC, 28, -1.080888692483e+00, 5.779925955492e-04, 8.2885e-02, 1.9000e-03, + 2DIAGNOSTIC, 29, -1.081764153078e+00, 5.460452530791e-04, 8.4383e-02, 1.4980e-03, + 2DIAGNOSTIC, 30, -1.084288797002e+00, 5.005334234615e-04, 8.6061e-02, 1.6780e-03, + 2DIAGNOSTIC, 31, -1.085018992246e+00, 4.755819663836e-04, 8.7990e-02, 1.9290e-03, + 2DIAGNOSTIC, 32, -1.084498440280e+00, 4.275766793946e-04, 8.9549e-02, 1.5590e-03, + 2DIAGNOSTIC, 33, -1.084198626352e+00, 3.387314903140e-04, 9.1270e-02, 1.7209e-03, + 2DIAGNOSTIC, 34, -1.086275839501e+00, 2.360616564566e-04, 9.3925e-02, 2.6550e-03, + 2DIAGNOSTIC, 35, -1.086402996464e+00, 1.700248662818e-04, 9.5410e-02, 1.4851e-03, + 2DIAGNOSTIC, 36, -1.087066977065e+00, 1.209850463174e-04, 9.6951e-02, 1.5411e-03, + 2DIAGNOSTIC, 37, -1.087681904220e+00, 9.918852512874e-05, 9.8436e-02, 1.4849e-03, + 2DIAGNOSTIC, 38, -1.088231367691e+00, 8.692075900699e-05, 1.0017e-01, 1.7331e-03, + 2DIAGNOSTIC, 39, -1.088809967975e+00, 7.645399272158e-05, 1.0161e-01, 1.4460e-03, + 2DIAGNOSTIC, 40, -1.088381737217e+00, 7.316177727494e-05, 1.0313e-01, 1.5111e-03, + 2DIAGNOSTIC, 41, -1.089127253546e+00, 7.322765587528e-05, 1.0509e-01, 1.9619e-03, + 2DIAGNOSTIC, 42, -1.089270580502e+00, 6.398477375332e-05, 1.0681e-01, 1.7240e-03, + 2DIAGNOSTIC, 43, -1.088331333504e+00, 4.100303768806e-05, 1.0853e-01, 1.7152e-03, + 2DIAGNOSTIC, 44, -1.085478519690e+00, 1.078844763073e-05, 1.1004e-01, 1.5121e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.830242199748e-01, 1.797693134862e+308, 1.5729e-01, 4.7255e-02, + 2DIAGNOSTIC, 2, -6.829963596769e-01, 1.797693134862e+308, 1.6007e-01, 2.7790e-03, + 2DIAGNOSTIC, 3, -6.854619251348e-01, 1.797693134862e+308, 1.6275e-01, 2.6741e-03, + 2DIAGNOSTIC, 4, -6.888813663510e-01, 1.797693134862e+308, 1.6535e-01, 2.6050e-03, + 2DIAGNOSTIC, 5, -6.938070102848e-01, 1.797693134862e+308, 1.6778e-01, 2.4259e-03, + 2DIAGNOSTIC, 6, -7.000593948070e-01, 1.797693134862e+308, 1.7001e-01, 2.2299e-03, + 2DIAGNOSTIC, 7, -7.055137942451e-01, 1.797693134862e+308, 1.7223e-01, 2.2230e-03, + 2DIAGNOSTIC, 8, -7.174133498926e-01, 1.797693134862e+308, 1.7479e-01, 2.5620e-03, + 2DIAGNOSTIC, 9, -7.243002930567e-01, 1.797693134862e+308, 1.7770e-01, 2.9089e-03, + 2DIAGNOSTIC, 10, -7.311724483420e-01, 4.682707104229e-03, 1.8025e-01, 2.5518e-03, + 2DIAGNOSTIC, 11, -7.341184230890e-01, 4.693214669689e-03, 1.8306e-01, 2.8090e-03, + 2DIAGNOSTIC, 12, -7.416998929386e-01, 4.531957641941e-03, 1.8590e-01, 2.8410e-03, + 2DIAGNOSTIC, 13, -7.437189147840e-01, 4.118580459630e-03, 1.8853e-01, 2.6300e-03, + 2DIAGNOSTIC, 14, -7.460009373593e-01, 3.553522033939e-03, 1.9152e-01, 2.9819e-03, + 2DIAGNOSTIC, 15, -7.491950079856e-01, 2.958458733366e-03, 1.9469e-01, 3.1760e-03, + 2DIAGNOSTIC, 16, -7.524834831425e-01, 2.405496622992e-03, 1.9757e-01, 2.8751e-03, + 2DIAGNOSTIC, 17, -7.535691095149e-01, 1.844498383040e-03, 2.0044e-01, 2.8760e-03, + 2DIAGNOSTIC, 18, -7.541457911501e-01, 1.450112775259e-03, 2.0337e-01, 2.9230e-03, + 2DIAGNOSTIC, 19, -7.551718241230e-01, 1.127752194163e-03, 2.0592e-01, 2.5520e-03, + 2DIAGNOSTIC, 20, -7.559406134273e-01, 8.835348339560e-04, 2.0880e-01, 2.8832e-03, + 2DIAGNOSTIC, 21, -7.559865001827e-01, 6.330335425770e-04, 2.1244e-01, 3.6340e-03, + 2DIAGNOSTIC, 22, -7.559334907771e-01, 4.812208279279e-04, 2.1543e-01, 2.9938e-03, + 2DIAGNOSTIC, 23, -7.558677122346e-01, 3.318005140614e-04, 2.1840e-01, 2.9709e-03, + 2DIAGNOSTIC, 24, -7.559318020083e-01, 2.015174464557e-04, 2.2099e-01, 2.5859e-03, + 2DIAGNOSTIC, 25, -7.559382817881e-01, 1.115731796666e-04, 2.2359e-01, 2.6059e-03, + 2DIAGNOSTIC, 26, -7.560288926055e-01, 6.870086005533e-05, 2.2609e-01, 2.4979e-03, + 2DIAGNOSTIC, 27, -7.560171895521e-01, 3.829546992848e-05, 2.2864e-01, 2.5468e-03, + 2DIAGNOSTIC, 28, -7.560920442730e-01, 1.541391834829e-05, 2.3161e-01, 2.9781e-03, + 2DIAGNOSTIC, 29, -7.562677638536e-01, 8.525500974188e-06, 2.3485e-01, 3.2392e-03, + 2DIAGNOSTIC, 30, -7.562871243244e-01, 1.146179986547e-05, 2.3806e-01, 3.2020e-03, + 2DIAGNOSTIC, 31, -7.563069091667e-01, 1.407859169478e-05, 2.4244e-01, 4.3859e-03, + 2DIAGNOSTIC, 32, -7.563046132900e-01, 1.468627417905e-05, 2.4549e-01, 3.0510e-03, + 2DIAGNOSTIC, 33, -7.563130577682e-01, 1.327317998452e-05, 2.4856e-01, 3.0680e-03, + 2DIAGNOSTIC, 34, -7.563207569911e-01, 1.156444085898e-05, 2.5113e-01, 2.5730e-03, + 2DIAGNOSTIC, 35, -7.562925755844e-01, 8.679960210849e-06, 2.5365e-01, 2.5120e-03, + 2DIAGNOSTIC, 36, -7.563080302353e-01, 6.407183302949e-06, 2.5623e-01, 2.5799e-03, + 2DIAGNOSTIC, 37, -7.563274173632e-01, 3.812033392957e-06, 2.5876e-01, 2.5361e-03, + 2DIAGNOSTIC, 38, -7.563503046576e-01, 2.010306383946e-06, 2.6153e-01, 2.7699e-03, + 2DIAGNOSTIC, 39, -7.563628506628e-01, 2.040976484648e-06, 2.6399e-01, 2.4559e-03, + 2DIAGNOSTIC, 40, -7.563796708351e-01, 2.303680305949e-06, 2.6653e-01, 2.5408e-03, + 2DIAGNOSTIC, 41, -7.564411118719e-01, 3.171949215165e-06, 2.6916e-01, 2.6319e-03, + 2DIAGNOSTIC, 42, -7.565489421999e-01, 4.711996890405e-06, 2.7212e-01, 2.9619e-03, + 2DIAGNOSTIC, 43, -7.565802591110e-01, 6.131430709197e-06, 2.7466e-01, 2.5361e-03, + 2DIAGNOSTIC, 44, -7.565869562982e-01, 7.117141433512e-06, 2.7720e-01, 2.5442e-03, + 2DIAGNOSTIC, 45, -7.567784043009e-01, 8.850368368639e-06, 2.8007e-01, 2.8629e-03, + 2DIAGNOSTIC, 46, -7.569177697262e-01, 1.096334363520e-05, 2.8261e-01, 2.5430e-03, + 2DIAGNOSTIC, 47, -7.573351307930e-01, 1.552512462374e-05, 2.8580e-01, 3.1919e-03, + 2DIAGNOSTIC, 48, -7.574621207131e-01, 1.960899014574e-05, 2.8989e-01, 4.0851e-03, + 2DIAGNOSTIC, 49, -7.574790476904e-01, 2.197633656241e-05, 2.9228e-01, 2.3971e-03, + 2DIAGNOSTIC, 50, -7.575605520637e-01, 2.298753420593e-05, 2.9462e-01, 2.3332e-03, + 2DIAGNOSTIC, 51, -7.575751343137e-01, 2.233144382618e-05, 2.9723e-01, 2.6100e-03, + 2DIAGNOSTIC, 52, -7.575943718538e-01, 2.051737454969e-05, 2.9954e-01, 2.3110e-03, + 2DIAGNOSTIC, 53, -7.576095268736e-01, 1.721025560759e-05, 3.0185e-01, 2.3088e-03, + 2DIAGNOSTIC, 54, -7.576641382058e-01, 1.288164892092e-05, 3.0418e-01, 2.3310e-03, + 2DIAGNOSTIC, 55, -7.579342190458e-01, 1.073840681546e-05, 3.0706e-01, 2.8880e-03, + 2DIAGNOSTIC, 56, -7.579016363788e-01, 8.305436593515e-06, 3.0938e-01, 2.3119e-03, + 2DIAGNOSTIC, 57, -7.579144743565e-01, 8.110869757473e-06, 3.1169e-01, 2.3088e-03, + 2DIAGNOSTIC, 58, -7.581472509574e-01, 9.587239535747e-06, 3.1428e-01, 2.5940e-03, + 2DIAGNOSTIC, 59, -7.584063076693e-01, 1.185649612390e-05, 3.1715e-01, 2.8679e-03, + 2DIAGNOSTIC, 60, -7.583541345819e-01, 1.309073784768e-05, 3.1977e-01, 2.6221e-03, + 2DIAGNOSTIC, 61, -7.584947680885e-01, 1.409788434936e-05, 3.2298e-01, 3.2151e-03, + 2DIAGNOSTIC, 62, -7.585049283059e-01, 1.396694339834e-05, 3.2614e-01, 3.1581e-03, + 2DIAGNOSTIC, 63, -7.585542155838e-01, 1.291594259535e-05, 3.2935e-01, 3.2039e-03, + 2DIAGNOSTIC, 64, -7.585460899400e-01, 1.090952946193e-05, 3.3306e-01, 3.7110e-03, + 2DIAGNOSTIC, 65, -7.585573869773e-01, 9.641396449146e-06, 3.3544e-01, 2.3820e-03, + 2DIAGNOSTIC, 66, -7.584857781241e-01, 6.959043994535e-06, 3.3783e-01, 2.3921e-03, + 2DIAGNOSTIC, 67, -7.584184663510e-01, 3.407180945329e-06, 3.4056e-01, 2.7239e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.660275406019e-01, 1.797693134862e+308, 4.0347e-01, 6.2912e-02, + 2DIAGNOSTIC, 2, -5.663255662963e-01, 1.797693134862e+308, 4.1486e-01, 1.1396e-02, + 2DIAGNOSTIC, 3, -5.668045170129e-01, 1.797693134862e+308, 4.2639e-01, 1.1531e-02, + 2DIAGNOSTIC, 4, -5.674530244930e-01, 1.797693134862e+308, 4.3808e-01, 1.1682e-02, + 2DIAGNOSTIC, 5, -5.683040323263e-01, 1.797693134862e+308, 4.4988e-01, 1.1803e-02, + 2DIAGNOSTIC, 6, -5.692673443545e-01, 1.797693134862e+308, 4.6141e-01, 1.1529e-02, + 2DIAGNOSTIC, 7, -5.700202725965e-01, 1.797693134862e+308, 4.7794e-01, 1.6530e-02, + 2DIAGNOSTIC, 8, -5.700841220862e-01, 1.797693134862e+308, 4.8982e-01, 1.1885e-02, + 2DIAGNOSTIC, 9, -5.702452941924e-01, 1.797693134862e+308, 5.0101e-01, 1.1186e-02, + 2DIAGNOSTIC, 10, -5.704604693796e-01, 5.789783626294e-04, 5.1234e-01, 1.1326e-02, + 2DIAGNOSTIC, 11, -5.706132438412e-01, 4.752813043937e-04, 5.2948e-01, 1.7145e-02, + 2DIAGNOSTIC, 12, -5.706272367434e-01, 3.592446453058e-04, 5.4236e-01, 1.2877e-02, + 2DIAGNOSTIC, 13, -5.706275923938e-01, 2.476387604496e-04, 5.5498e-01, 1.2619e-02, + 2DIAGNOSTIC, 14, -5.706328364634e-01, 1.530158747595e-04, 5.6768e-01, 1.2703e-02, + 2DIAGNOSTIC, 15, -5.706424182665e-01, 8.518828521956e-05, 5.8022e-01, 1.2541e-02, + 2DIAGNOSTIC, 16, -5.706527928504e-01, 4.794271233444e-05, 5.9289e-01, 1.2670e-02, + 2DIAGNOSTIC, 17, -5.706568419539e-01, 3.316541920304e-05, 6.0546e-01, 1.2568e-02, + 2DIAGNOSTIC, 18, -5.706553634593e-01, 1.888795587644e-05, 6.1663e-01, 1.1167e-02, + 2DIAGNOSTIC, 19, -5.706578052616e-01, 8.723571083141e-06, 6.2910e-01, 1.2475e-02, + 2DIAGNOSTIC, 20, -5.706599297622e-01, 4.233402268995e-06, 6.4167e-01, 1.2571e-02, + 2DIAGNOSTIC, 21, -5.706581297095e-01, 3.498700168247e-06, 6.5480e-01, 1.3128e-02, + 2DIAGNOSTIC, 22, -5.706526201115e-01, 2.843415048366e-06, 6.6785e-01, 1.3054e-02, + 2DIAGNOSTIC, 23, -5.706542316912e-01, 2.163985461816e-06, 6.8601e-01, 1.8157e-02, + 2DIAGNOSTIC, 24, -5.706511629039e-01, 1.507901933491e-06, 6.9916e-01, 1.3147e-02, + 2DIAGNOSTIC, 25, -5.706489783848e-01, 1.029179596775e-06, 7.1216e-01, 1.3001e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.726696725468e-01, 1.797693134862e+308, 8.9621e-01, 1.8405e-01, + Elapsed time (stage 1): 9.1882e-01 + + +Total elapsed time: 2.0792e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:39:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 31 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 66 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 78.41% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 78.41% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[ 9438 7703 3298 26289 2286 2296 4752 564 2682 406 188 533 + 0 624 259 183 0 0 0 0 0 0 0 0 + 0 0 0 0 0 0 0] +[98224 52255 34677 25110 28054 21620 24539 14482 3957 8430 6937 1984 + 2542 2035 1824 2135 220 1191 1352 1457 664 531 426 0 + 0 601 443 763 245 415 188] +[ 193 3179 0 170 615 0 0 0 3340 33091 0 260 + 170 0 8972 0 4119 1934 0 11735 872 0 166 0 + 0 7403 0 1348 0 0 0] +[ 904 56154 198 1489 0 5529 2837 1001 48112 984 0 2888 + 1487 1445 4438 1308 0 19308 3259 200 5195 1227 1950 1713 + 5100 52766 597 17895 1063 1149 4032] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:48:47 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:48:51 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:34 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:34 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:34 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:44 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:48 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC002 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:59 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:53:24 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:55:09 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:55:11 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:56:27 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:56:28 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5645a3e7cd20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.2585, 106.949, -144.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5645a3cf3730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff23b8e5010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5645a3e80020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 46.8152, -138.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5645a3e860c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff238226010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5645a3e96840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.2585, 106.949, -144.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5645a3e82890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff233552010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5645a3e9a3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 46.8152, -138.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5645a3e89130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff22fe93010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.000455269161e-01, 1.797693134862e+308, 2.4102e-01, 2.4102e-01, + 2DIAGNOSTIC, 2, -4.013971536240e-01, 1.797693134862e+308, 2.4238e-01, 1.3590e-03, + 2DIAGNOSTIC, 3, -4.035865175024e-01, 1.797693134862e+308, 2.4373e-01, 1.3590e-03, + 2DIAGNOSTIC, 4, -4.112533745259e-01, 1.797693134862e+308, 2.4513e-01, 1.3928e-03, + 2DIAGNOSTIC, 5, -4.157652036288e-01, 1.797693134862e+308, 2.4649e-01, 1.3590e-03, + 2DIAGNOSTIC, 6, -4.384542768240e-01, 1.797693134862e+308, 2.4783e-01, 1.3399e-03, + 2DIAGNOSTIC, 7, -5.139385628899e-01, 1.797693134862e+308, 2.4929e-01, 1.4651e-03, + 2DIAGNOSTIC, 8, -5.268374372039e-01, 1.797693134862e+308, 2.5104e-01, 1.7478e-03, + 2DIAGNOSTIC, 9, -5.350664555802e-01, 1.797693134862e+308, 2.5400e-01, 2.9659e-03, + 2DIAGNOSTIC, 10, -5.379574940401e-01, 2.436202066964e-02, 2.6042e-01, 6.4170e-03, + 2DIAGNOSTIC, 11, -5.379574878813e-01, 2.248592287390e-02, 2.6221e-01, 1.7869e-03, + 2DIAGNOSTIC, 12, -5.379575910137e-01, 1.898720817894e-02, 2.6396e-01, 1.7512e-03, + 2DIAGNOSTIC, 13, -5.379577653845e-01, 1.448757463187e-02, 2.6563e-01, 1.6670e-03, + 2DIAGNOSTIC, 14, -5.379580601725e-01, 9.776112569222e-03, 2.6730e-01, 1.6770e-03, + 2DIAGNOSTIC, 15, -5.379585584536e-01, 5.067771551716e-03, 2.6907e-01, 1.7619e-03, + 2DIAGNOSTIC, 16, -5.379594004656e-01, 1.303399000307e-03, 2.7072e-01, 1.6549e-03, + 2DIAGNOSTIC, 17, -5.379608226563e-01, 4.667049881983e-04, 2.7240e-01, 1.6789e-03, + 2DIAGNOSTIC, 18, -5.379632228800e-01, 9.470711405095e-05, 2.7405e-01, 1.6470e-03, + 2DIAGNOSTIC, 19, -5.379672682688e-01, 2.355142187375e-06, 2.7575e-01, 1.7021e-03, + 2DIAGNOSTIC, 20, -5.379740708957e-01, 2.581640467680e-06, 2.7743e-01, 1.6840e-03, + 2DIAGNOSTIC, 21, -5.379854657517e-01, 3.009567577379e-06, 2.7905e-01, 1.6210e-03, + 2DIAGNOSTIC, 22, -5.380044273311e-01, 3.752807675068e-06, 2.8072e-01, 1.6680e-03, + 2DIAGNOSTIC, 23, -5.380356635927e-01, 4.984099541118e-06, 2.8235e-01, 1.6279e-03, + 2DIAGNOSTIC, 24, -5.380862585957e-01, 6.958790343591e-06, 2.8399e-01, 1.6410e-03, + 2DIAGNOSTIC, 25, -5.381656437798e-01, 1.001988137562e-05, 2.8561e-01, 1.6181e-03, + 2DIAGNOSTIC, 26, -5.382826018643e-01, 1.452574606250e-05, 2.8724e-01, 1.6270e-03, + 2DIAGNOSTIC, 27, -5.384383744924e-01, 2.064808732702e-05, 2.8887e-01, 1.6351e-03, + 2DIAGNOSTIC, 28, -5.382345061496e-01, 2.042241486472e-05, 2.9052e-01, 1.6479e-03, + 2DIAGNOSTIC, 29, -5.383770592134e-01, 2.137966088574e-05, 2.9215e-01, 1.6279e-03, + 2DIAGNOSTIC, 30, -5.384664246494e-01, 2.203905140923e-05, 2.9379e-01, 1.6398e-03, + 2DIAGNOSTIC, 31, -5.389494769506e-01, 2.940826370455e-05, 2.9538e-01, 1.5900e-03, + 2DIAGNOSTIC, 32, -5.390521062329e-01, 3.551496948335e-05, 2.9701e-01, 1.6370e-03, + 2DIAGNOSTIC, 33, -5.391254608820e-01, 3.985622236746e-05, 2.9888e-01, 1.8661e-03, + 2DIAGNOSTIC, 34, -5.391500169622e-01, 4.157664162953e-05, 3.0094e-01, 2.0621e-03, + 2DIAGNOSTIC, 35, -5.391689161074e-01, 4.078285734260e-05, 3.0256e-01, 1.6191e-03, + 2DIAGNOSTIC, 36, -5.391879554480e-01, 3.814068527070e-05, 3.0446e-01, 1.9019e-03, + 2DIAGNOSTIC, 37, -5.392256229046e-01, 3.506361649275e-05, 3.0684e-01, 2.3768e-03, + 2DIAGNOSTIC, 38, -5.392533696080e-01, 2.639654109887e-05, 3.0857e-01, 1.7259e-03, + 2DIAGNOSTIC, 39, -5.392641051416e-01, 1.797749374084e-05, 3.1025e-01, 1.6801e-03, + 2DIAGNOSTIC, 40, -5.392759834757e-01, 9.597664046391e-06, 3.1241e-01, 2.1689e-03, + 2DIAGNOSTIC, 41, -5.392863179530e-01, 7.370916843229e-06, 3.1407e-01, 1.6549e-03, + 2DIAGNOSTIC, 42, -5.393052793632e-01, 6.182199005795e-06, 3.1575e-01, 1.6780e-03, + 2DIAGNOSTIC, 43, -5.391613548626e-01, 3.625480179344e-06, 3.1820e-01, 2.4569e-03, + 2DIAGNOSTIC, 44, -5.391680204054e-01, 1.359436424892e-06, 3.1995e-01, 1.7438e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.123941443387e-01, 1.797693134862e+308, 5.5448e-01, 2.3454e-01, + 2DIAGNOSTIC, 2, -4.118459644667e-01, 1.797693134862e+308, 5.5692e-01, 2.4321e-03, + 2DIAGNOSTIC, 3, -4.131829135500e-01, 1.797693134862e+308, 5.5930e-01, 2.3830e-03, + 2DIAGNOSTIC, 4, -4.170400855746e-01, 1.797693134862e+308, 5.6165e-01, 2.3549e-03, + 2DIAGNOSTIC, 5, -4.221975914450e-01, 1.797693134862e+308, 5.6446e-01, 2.8059e-03, + 2DIAGNOSTIC, 6, -4.293807897140e-01, 1.797693134862e+308, 5.6789e-01, 3.4349e-03, + 2DIAGNOSTIC, 7, -4.297597247405e-01, 1.797693134862e+308, 5.7030e-01, 2.4068e-03, + 2DIAGNOSTIC, 8, -4.301921701028e-01, 1.797693134862e+308, 5.7232e-01, 2.0189e-03, + 2DIAGNOSTIC, 9, -4.304250442584e-01, 1.797693134862e+308, 5.7434e-01, 2.0189e-03, + 2DIAGNOSTIC, 10, -4.309190263369e-01, 3.621814662373e-03, 5.7690e-01, 2.5570e-03, + 2DIAGNOSTIC, 11, -4.315403693143e-01, 2.954356249786e-03, 5.7996e-01, 3.0649e-03, + 2DIAGNOSTIC, 12, -4.315511931213e-01, 2.108588576005e-03, 5.8416e-01, 4.1971e-03, + 2DIAGNOSTIC, 13, -4.322067428660e-01, 1.311348688701e-03, 5.8751e-01, 3.3560e-03, + 2DIAGNOSTIC, 14, -4.324302119540e-01, 7.024455044371e-04, 5.8987e-01, 2.3601e-03, + 2DIAGNOSTIC, 15, -4.336839442254e-01, 3.882391240210e-04, 5.9246e-01, 2.5880e-03, + 2DIAGNOSTIC, 16, -4.354406735296e-01, 4.493884756946e-04, 5.9498e-01, 2.5182e-03, + 2DIAGNOSTIC, 17, -4.366813169736e-01, 5.238932136463e-04, 5.9796e-01, 2.9788e-03, + 2DIAGNOSTIC, 18, -4.367451906058e-01, 5.602358625093e-04, 6.0018e-01, 2.2161e-03, + 2DIAGNOSTIC, 19, -4.367820887786e-01, 5.512572283847e-04, 6.0238e-01, 2.2080e-03, + 2DIAGNOSTIC, 20, -4.368626325993e-01, 5.107048498761e-04, 6.0608e-01, 3.7010e-03, + 2DIAGNOSTIC, 21, -4.370068939158e-01, 4.499501715307e-04, 6.0826e-01, 2.1801e-03, + 2DIAGNOSTIC, 22, -4.370301635932e-01, 3.532288732722e-04, 6.1045e-01, 2.1899e-03, + 2DIAGNOSTIC, 23, -4.370672609941e-01, 2.530697633294e-04, 6.1270e-01, 2.2461e-03, + 2DIAGNOSTIC, 24, -4.371619745235e-01, 1.467442728911e-04, 6.1494e-01, 2.2421e-03, + 2DIAGNOSTIC, 25, -4.371773429828e-01, 6.793672870244e-05, 6.1718e-01, 2.2349e-03, + 2DIAGNOSTIC, 26, -4.371984120655e-01, 3.325138551328e-05, 6.2032e-01, 3.1462e-03, + 2DIAGNOSTIC, 27, -4.372043837928e-01, 2.862129013984e-05, 6.2257e-01, 2.2459e-03, + 2DIAGNOSTIC, 28, -4.372934617850e-01, 2.537898331387e-05, 6.2483e-01, 2.2600e-03, + 2DIAGNOSTIC, 29, -4.373889797672e-01, 2.299207523787e-05, 6.2896e-01, 4.1280e-03, + 2DIAGNOSTIC, 30, -4.373167851288e-01, 1.876120222823e-05, 6.3152e-01, 2.5649e-03, + 2DIAGNOSTIC, 31, -4.373169162787e-01, 1.631844720291e-05, 6.3376e-01, 2.2409e-03, + 2DIAGNOSTIC, 32, -4.373172976532e-01, 1.307979953891e-05, 6.3599e-01, 2.2228e-03, + 2DIAGNOSTIC, 33, -4.373189570517e-01, 9.563043770609e-06, 6.3818e-01, 2.1980e-03, + 2DIAGNOSTIC, 34, -4.373962480767e-01, 8.732952571838e-06, 6.4041e-01, 2.2299e-03, + 2DIAGNOSTIC, 35, -4.373330979512e-01, 6.306169445771e-06, 6.4262e-01, 2.2101e-03, + 2DIAGNOSTIC, 36, -4.373471857164e-01, 4.245767440077e-06, 6.4484e-01, 2.2130e-03, + 2DIAGNOSTIC, 37, -4.373712249884e-01, 2.467616214794e-06, 6.4763e-01, 2.7881e-03, + 2DIAGNOSTIC, 38, -4.375667290690e-01, 5.456241983011e-06, 6.5106e-01, 3.4339e-03, + 2DIAGNOSTIC, 39, -4.376606427258e-01, 1.097166751101e-05, 6.5388e-01, 2.8200e-03, + 2DIAGNOSTIC, 40, -4.375936467845e-01, 1.296986656146e-05, 6.5609e-01, 2.2142e-03, + 2DIAGNOSTIC, 41, -4.376503552689e-01, 1.473729352169e-05, 6.5903e-01, 2.9368e-03, + 2DIAGNOSTIC, 42, -4.376642985824e-01, 1.527646833782e-05, 6.6132e-01, 2.2898e-03, + 2DIAGNOSTIC, 43, -4.376675060972e-01, 1.436715261983e-05, 6.6365e-01, 2.3260e-03, + 2DIAGNOSTIC, 44, -4.377588341896e-01, 1.473056819098e-05, 6.6627e-01, 2.6240e-03, + 2DIAGNOSTIC, 45, -4.379109897099e-01, 1.505442153458e-05, 6.6930e-01, 3.0322e-03, + 2DIAGNOSTIC, 46, -4.385075428071e-01, 2.268225693571e-05, 6.7217e-01, 2.8660e-03, + 2DIAGNOSTIC, 47, -4.388535244166e-01, 3.276084354500e-05, 6.7475e-01, 2.5821e-03, + 2DIAGNOSTIC, 48, -4.392893512600e-01, 4.791472105000e-05, 6.7801e-01, 3.2609e-03, + 2DIAGNOSTIC, 49, -4.399419326123e-01, 6.792122556556e-05, 6.8060e-01, 2.5890e-03, + 2DIAGNOSTIC, 50, -4.400471827464e-01, 8.098330748737e-05, 6.8297e-01, 2.3720e-03, + 2DIAGNOSTIC, 51, -4.404532142905e-01, 9.177628434783e-05, 6.8504e-01, 2.0709e-03, + 2DIAGNOSTIC, 52, -4.407801050342e-01, 9.761990910999e-05, 6.8741e-01, 2.3711e-03, + 2DIAGNOSTIC, 53, -4.412935676998e-01, 1.002479736856e-04, 6.8982e-01, 2.4099e-03, + 2DIAGNOSTIC, 54, -4.421158829791e-01, 1.041703280876e-04, 6.9199e-01, 2.1641e-03, + 2DIAGNOSTIC, 55, -4.430781900409e-01, 1.109662520700e-04, 6.9453e-01, 2.5380e-03, + 2DIAGNOSTIC, 56, -4.502560714780e-01, 1.974454050725e-04, 6.9709e-01, 2.5661e-03, + 2DIAGNOSTIC, 57, -4.629409013117e-01, 4.087316710158e-04, 6.9968e-01, 2.5868e-03, + 2DIAGNOSTIC, 58, -4.811208509907e-01, 7.785580473989e-04, 7.0196e-01, 2.2771e-03, + 2DIAGNOSTIC, 59, -5.173288572233e-01, 1.461222344167e-03, 7.0477e-01, 2.8179e-03, + 2DIAGNOSTIC, 60, -5.321625824877e-01, 2.129923654202e-03, 7.0727e-01, 2.4931e-03, + 2DIAGNOSTIC, 61, -5.323438042133e-01, 2.575730394612e-03, 7.0944e-01, 2.1691e-03, + 2DIAGNOSTIC, 62, -5.644952072035e-01, 3.095062911035e-03, 7.1195e-01, 2.5160e-03, + 2DIAGNOSTIC, 63, -5.966021510924e-01, 3.612890244519e-03, 7.1503e-01, 3.0770e-03, + 2DIAGNOSTIC, 64, -6.044826935010e-01, 3.838572318280e-03, 7.1719e-01, 2.1570e-03, + 2DIAGNOSTIC, 65, -6.214888698677e-01, 3.864842376403e-03, 7.1935e-01, 2.1641e-03, + 2DIAGNOSTIC, 66, -6.451643692117e-01, 3.813975448122e-03, 7.2304e-01, 3.6910e-03, + 2DIAGNOSTIC, 67, -6.492749130044e-01, 3.547920505756e-03, 7.2512e-01, 2.0759e-03, + 2DIAGNOSTIC, 68, -6.568386264803e-01, 3.176727571509e-03, 7.2723e-01, 2.1081e-03, + 2DIAGNOSTIC, 69, -6.707610183484e-01, 2.962175294256e-03, 7.2990e-01, 2.6739e-03, + 2DIAGNOSTIC, 70, -6.742469884620e-01, 2.634614369116e-03, 7.3201e-01, 2.1150e-03, + 2DIAGNOSTIC, 71, -6.811264610928e-01, 2.121913790318e-03, 7.3471e-01, 2.6989e-03, + 2DIAGNOSTIC, 72, -6.890427228646e-01, 1.756103285501e-03, 7.3681e-01, 2.0919e-03, + 2DIAGNOSTIC, 73, -6.938941115440e-01, 1.540347406877e-03, 7.3894e-01, 2.1338e-03, + 2DIAGNOSTIC, 74, -7.100490434352e-01, 1.375389112217e-03, 7.4196e-01, 3.0220e-03, + 2DIAGNOSTIC, 75, -7.174278133089e-01, 1.269831898755e-03, 7.4407e-01, 2.1110e-03, + 2DIAGNOSTIC, 76, -7.232040399724e-01, 1.274858659325e-03, 7.4760e-01, 3.5250e-03, + 2DIAGNOSTIC, 77, -7.242777852050e-01, 1.196833308798e-03, 7.4964e-01, 2.0471e-03, + 2DIAGNOSTIC, 78, -7.258624850520e-01, 1.073011939193e-03, 7.5201e-01, 2.3680e-03, + 2DIAGNOSTIC, 79, -7.264511209599e-01, 9.556462992873e-04, 7.5415e-01, 2.1350e-03, + 2DIAGNOSTIC, 80, -7.272148003415e-01, 7.797823392963e-04, 7.5619e-01, 2.0380e-03, + 2DIAGNOSTIC, 81, -7.284442491103e-01, 5.922431549889e-04, 7.5823e-01, 2.0468e-03, + 2DIAGNOSTIC, 82, -7.317145944715e-01, 4.325170207637e-04, 7.6037e-01, 2.1400e-03, + 2DIAGNOSTIC, 83, -7.507243558948e-01, 3.960268903630e-04, 7.6315e-01, 2.7800e-03, + 2DIAGNOSTIC, 84, -7.540014527707e-01, 4.480941952594e-04, 7.6630e-01, 3.1478e-03, + 2DIAGNOSTIC, 85, -7.541107007682e-01, 5.046383054697e-04, 7.6884e-01, 2.5442e-03, + 2DIAGNOSTIC, 86, -7.537853521222e-01, 5.478533803880e-04, 7.7106e-01, 2.2180e-03, + 2DIAGNOSTIC, 87, -7.536498173731e-01, 5.423292524899e-04, 7.7325e-01, 2.1870e-03, + 2DIAGNOSTIC, 88, -7.537205852761e-01, 4.931073477965e-04, 7.7570e-01, 2.4509e-03, + 2DIAGNOSTIC, 89, -7.538796614590e-01, 4.021101665253e-04, 7.7784e-01, 2.1381e-03, + 2DIAGNOSTIC, 90, -7.551380334385e-01, 2.893202668345e-04, 7.8126e-01, 3.4239e-03, + 2DIAGNOSTIC, 91, -7.555355199201e-01, 1.628822065103e-04, 7.8408e-01, 2.8169e-03, + 2DIAGNOSTIC, 92, -7.557719841151e-01, 4.231605496584e-05, 7.8654e-01, 2.4631e-03, + 2DIAGNOSTIC, 93, -7.554287713233e-01, 2.823990489925e-05, 7.8870e-01, 2.1570e-03, + 2DIAGNOSTIC, 94, -7.554522732780e-01, 3.061249510602e-05, 7.9087e-01, 2.1758e-03, + 2DIAGNOSTIC, 95, -7.556645216880e-01, 3.171791371692e-05, 7.9303e-01, 2.1520e-03, + 2DIAGNOSTIC, 96, -7.557195226105e-01, 2.820344151932e-05, 7.9547e-01, 2.4390e-03, + 2DIAGNOSTIC, 97, -7.556323034023e-01, 2.100473143075e-05, 7.9832e-01, 2.8560e-03, + 2DIAGNOSTIC, 98, -7.556016263780e-01, 1.239559787790e-05, 8.0199e-01, 3.6709e-03, + 2DIAGNOSTIC, 99, -7.556378828643e-01, 3.763840209588e-06, 8.0567e-01, 3.6771e-03, + 2DIAGNOSTIC, 100, -7.558138576948e-01, 2.389989032339e-06, 8.1425e-01, 8.5800e-03, + 2DIAGNOSTIC, 101, -7.558138373024e-01, 2.813889737633e-06, 8.1647e-01, 2.2180e-03, + 2DIAGNOSTIC, 102, -7.558138601108e-01, 4.280976284011e-06, 8.1868e-01, 2.2070e-03, + 2DIAGNOSTIC, 103, -7.558138986752e-01, 3.657843534453e-06, 8.2093e-01, 2.2581e-03, + 2DIAGNOSTIC, 104, -7.558139638479e-01, 2.815193022134e-06, 8.2329e-01, 2.3611e-03, + 2DIAGNOSTIC, 105, -7.558140739424e-01, 2.763882928082e-06, 8.2534e-01, 2.0430e-03, + 2DIAGNOSTIC, 106, -7.558142597920e-01, 2.761171215485e-06, 8.2764e-01, 2.3019e-03, + 2DIAGNOSTIC, 107, -7.558145731523e-01, 2.139342717025e-06, 8.3006e-01, 2.4192e-03, + 2DIAGNOSTIC, 108, -7.558151004500e-01, 1.229062848445e-06, 8.3225e-01, 2.1958e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.210796212391e-01, 1.797693134862e+308, 1.0899e+00, 2.5768e-01, + 2DIAGNOSTIC, 2, -6.222736381663e-01, 1.797693134862e+308, 1.1014e+00, 1.1512e-02, + 2DIAGNOSTIC, 3, -6.241449296557e-01, 1.797693134862e+308, 1.1130e+00, 1.1561e-02, + 2DIAGNOSTIC, 4, -6.257272935761e-01, 1.797693134862e+308, 1.1247e+00, 1.1657e-02, + 2DIAGNOSTIC, 5, -6.269379364637e-01, 1.797693134862e+308, 1.1362e+00, 1.1560e-02, + 2DIAGNOSTIC, 6, -6.274891611594e-01, 1.797693134862e+308, 1.1498e+00, 1.3587e-02, + 2DIAGNOSTIC, 7, -6.291009371323e-01, 1.797693134862e+308, 1.1728e+00, 2.3017e-02, + 2DIAGNOSTIC, 8, -6.291371852805e-01, 1.797693134862e+308, 1.1868e+00, 1.3994e-02, + 2DIAGNOSTIC, 9, -6.291897686298e-01, 1.797693134862e+308, 1.2011e+00, 1.4276e-02, + 2DIAGNOSTIC, 10, -6.292478084160e-01, 8.825027477341e-04, 1.2156e+00, 1.4463e-02, + 2DIAGNOSTIC, 11, -6.292980307973e-01, 6.298257590183e-04, 1.2294e+00, 1.3864e-02, + 2DIAGNOSTIC, 12, -6.293032257745e-01, 4.068676360206e-04, 1.2430e+00, 1.3571e-02, + 2DIAGNOSTIC, 13, -6.293055721528e-01, 2.462159748136e-04, 1.2554e+00, 1.2365e-02, + 2DIAGNOSTIC, 14, -6.293121807486e-01, 1.378094672504e-04, 1.2678e+00, 1.2476e-02, + 2DIAGNOSTIC, 15, -6.293152824381e-01, 6.827024509888e-05, 1.2802e+00, 1.2372e-02, + 2DIAGNOSTIC, 16, -6.292956101093e-01, 1.512923305079e-05, 1.2944e+00, 1.4165e-02, + 2DIAGNOSTIC, 17, -6.293729667527e-01, 1.206800875119e-05, 1.3068e+00, 1.2453e-02, + 2DIAGNOSTIC, 18, -6.294143271323e-01, 1.029633964249e-05, 1.3192e+00, 1.2333e-02, + 2DIAGNOSTIC, 19, -6.295010846563e-01, 1.120166066133e-05, 1.3314e+00, 1.2237e-02, + 2DIAGNOSTIC, 20, -6.296843472921e-01, 1.654539722029e-05, 1.3436e+00, 1.2213e-02, + 2DIAGNOSTIC, 21, -6.298896731353e-01, 2.541742256607e-05, 1.3567e+00, 1.3070e-02, + 2DIAGNOSTIC, 22, -6.302468763770e-01, 3.862858406162e-05, 1.3711e+00, 1.4378e-02, + 2DIAGNOSTIC, 23, -6.313178833673e-01, 6.818801103881e-05, 1.3966e+00, 2.5519e-02, + 2DIAGNOSTIC, 24, -6.313256650682e-01, 8.882429321433e-05, 1.4134e+00, 1.6784e-02, + 2DIAGNOSTIC, 25, -6.312967452321e-01, 9.941917605594e-05, 1.4282e+00, 1.4809e-02, + 2DIAGNOSTIC, 26, -6.312647325759e-01, 9.928673753869e-05, 1.4423e+00, 1.4145e-02, + 2DIAGNOSTIC, 27, -6.312679787560e-01, 9.115675622762e-05, 1.4545e+00, 1.2186e-02, + 2DIAGNOSTIC, 28, -6.312550568989e-01, 7.530419350640e-05, 1.4667e+00, 1.2231e-02, + 2DIAGNOSTIC, 29, -6.312612827474e-01, 5.497744738760e-05, 1.4810e+00, 1.4230e-02, + 2DIAGNOSTIC, 30, -6.312646093503e-01, 3.397150393392e-05, 1.4931e+00, 1.2154e-02, + 2DIAGNOSTIC, 31, -6.312506958084e-01, 1.404751441375e-05, 1.5053e+00, 1.2206e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.288140078022e-01, 1.797693134862e+308, 1.9280e+00, 4.2266e-01, + 2DIAGNOSTIC, 2, -5.293444387797e-01, 1.797693134862e+308, 2.0051e+00, 7.7084e-02, + 2DIAGNOSTIC, 3, -5.296546242989e-01, 1.797693134862e+308, 2.0867e+00, 8.1585e-02, + 2DIAGNOSTIC, 4, -5.299933029939e-01, 1.797693134862e+308, 2.1717e+00, 8.5070e-02, + 2DIAGNOSTIC, 5, -5.300952789935e-01, 1.797693134862e+308, 2.2466e+00, 7.4834e-02, + 2DIAGNOSTIC, 6, -5.302777766673e-01, 1.797693134862e+308, 2.3324e+00, 8.5852e-02, + 2DIAGNOSTIC, 7, -5.306782044801e-01, 1.797693134862e+308, 2.4416e+00, 1.0914e-01, + 2DIAGNOSTIC, 8, -5.307574710617e-01, 1.797693134862e+308, 2.5154e+00, 7.3832e-02, + 2DIAGNOSTIC, 9, -5.308436276516e-01, 1.797693134862e+308, 2.5886e+00, 7.3206e-02, + 2DIAGNOSTIC, 10, -5.310574756279e-01, 2.539319323806e-04, 2.7145e+00, 1.2592e-01, + 2DIAGNOSTIC, 11, -5.310536383486e-01, 1.932756223855e-04, 2.8467e+00, 1.3222e-01, + 2DIAGNOSTIC, 12, -5.310546163423e-01, 1.491050654282e-04, 2.9535e+00, 1.0680e-01, + 2DIAGNOSTIC, 13, -5.310534117871e-01, 1.110369415713e-04, 3.0335e+00, 8.0000e-02, + 2DIAGNOSTIC, 14, -5.310525625861e-01, 8.160566043877e-05, 3.1112e+00, 7.7663e-02, + 2DIAGNOSTIC, 15, -5.310522908951e-01, 5.238668343797e-05, 3.1991e+00, 8.7870e-02, + 2DIAGNOSTIC, 16, -5.310502039298e-01, 2.792486121325e-05, 3.2744e+00, 7.5300e-02, + 2DIAGNOSTIC, 17, -5.310561331850e-01, 1.683420993299e-05, 3.3857e+00, 1.1132e-01, + 2DIAGNOSTIC, 18, -5.310555041871e-01, 7.931266387519e-06, 3.4841e+00, 9.8423e-02, + 2DIAGNOSTIC, 19, -5.310545700962e-01, 1.626301685265e-06, 3.5787e+00, 9.4552e-02, + 2DIAGNOSTIC, 20, -5.310518895865e-01, 1.618678822056e-06, 3.6881e+00, 1.0948e-01, + 2DIAGNOSTIC, 21, -5.310505103435e-01, 1.476556111553e-06, 3.7850e+00, 9.6881e-02, + 2DIAGNOSTIC, 22, -5.310491999613e-01, 1.341055999880e-06, 3.8812e+00, 9.6208e-02, + 2DIAGNOSTIC, 23, -5.310478887263e-01, 1.167655740125e-06, 3.9632e+00, 8.1935e-02, + 2DIAGNOSTIC, 24, -5.310486204243e-01, 1.028760198904e-06, 4.0458e+00, 8.2663e-02, + Elapsed time (stage 0): 4.1974e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.876617927597e-01, 1.797693134862e+308, 2.0667e-01, 2.0667e-01, + 2DIAGNOSTIC, 2, -8.909972977935e-01, 1.797693134862e+308, 2.0787e-01, 1.2009e-03, + 2DIAGNOSTIC, 3, -8.940908816840e-01, 1.797693134862e+308, 2.0913e-01, 1.2538e-03, + 2DIAGNOSTIC, 4, -8.997782886688e-01, 1.797693134862e+308, 2.1033e-01, 1.2000e-03, + 2DIAGNOSTIC, 5, -9.074361303463e-01, 1.797693134862e+308, 2.1148e-01, 1.1489e-03, + 2DIAGNOSTIC, 6, -9.268333162892e-01, 1.797693134862e+308, 2.1269e-01, 1.2171e-03, + 2DIAGNOSTIC, 7, -9.373394367510e-01, 1.797693134862e+308, 2.1440e-01, 1.7040e-03, + 2DIAGNOSTIC, 8, -9.452261230267e-01, 1.797693134862e+308, 2.1559e-01, 1.1930e-03, + 2DIAGNOSTIC, 9, -9.514829510762e-01, 1.797693134862e+308, 2.1712e-01, 1.5309e-03, + 2DIAGNOSTIC, 10, -9.550367738257e-01, 5.469226388211e-03, 2.1890e-01, 1.7838e-03, + 2DIAGNOSTIC, 11, -9.559127352535e-01, 4.869697737036e-03, 2.2029e-01, 1.3862e-03, + 2DIAGNOSTIC, 12, -9.628705112457e-01, 4.197605520627e-03, 2.2172e-01, 1.4291e-03, + 2DIAGNOSTIC, 13, -9.676474412929e-01, 3.437008502392e-03, 2.2318e-01, 1.4601e-03, + 2DIAGNOSTIC, 14, -9.706169512447e-01, 2.666067888010e-03, 2.2499e-01, 1.8101e-03, + 2DIAGNOSTIC, 15, -9.725145039679e-01, 1.946603613541e-03, 2.2723e-01, 2.2359e-03, + 2DIAGNOSTIC, 16, -9.720492073545e-01, 1.499510232334e-03, 2.2862e-01, 1.3950e-03, + 2DIAGNOSTIC, 17, -9.710235986520e-01, 1.135472433762e-03, 2.3028e-01, 1.6580e-03, + 2DIAGNOSTIC, 18, -9.714770495088e-01, 8.454424641179e-04, 2.3170e-01, 1.4169e-03, + 2DIAGNOSTIC, 19, -9.702715638802e-01, 5.876590203580e-04, 2.3312e-01, 1.4281e-03, + 2DIAGNOSTIC, 20, -9.698400263755e-01, 3.507946724084e-04, 2.3452e-01, 1.4000e-03, + 2DIAGNOSTIC, 21, -9.724560436496e-01, 1.533689077903e-04, 2.3587e-01, 1.3430e-03, + 2DIAGNOSTIC, 22, -9.719137055851e-01, 4.569957533003e-05, 2.3790e-01, 2.0308e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.047477592688e-01, 1.797693134862e+308, 4.4678e-01, 2.0888e-01, + 2DIAGNOSTIC, 2, -8.035624485400e-01, 1.797693134862e+308, 4.4915e-01, 2.3668e-03, + 2DIAGNOSTIC, 3, -8.048926109202e-01, 1.797693134862e+308, 4.5170e-01, 2.5530e-03, + 2DIAGNOSTIC, 4, -8.056553744004e-01, 1.797693134862e+308, 4.5428e-01, 2.5809e-03, + 2DIAGNOSTIC, 5, -8.060115649085e-01, 1.797693134862e+308, 4.5673e-01, 2.4509e-03, + 2DIAGNOSTIC, 6, -8.063682179856e-01, 1.797693134862e+308, 4.5876e-01, 2.0239e-03, + 2DIAGNOSTIC, 7, -8.071319712762e-01, 1.797693134862e+308, 4.6077e-01, 2.0130e-03, + 2DIAGNOSTIC, 8, -8.085512297080e-01, 1.797693134862e+308, 4.6301e-01, 2.2380e-03, + 2DIAGNOSTIC, 9, -8.093054939368e-01, 1.797693134862e+308, 4.6529e-01, 2.2810e-03, + 2DIAGNOSTIC, 10, -8.081075791139e-01, 4.153139700369e-04, 4.6782e-01, 2.5311e-03, + 2DIAGNOSTIC, 11, -8.090269516934e-01, 3.919834870846e-04, 4.7148e-01, 3.6628e-03, + 2DIAGNOSTIC, 12, -8.089243773392e-01, 2.977849505872e-04, 4.7398e-01, 2.5010e-03, + 2DIAGNOSTIC, 13, -8.101986557878e-01, 2.607213103296e-04, 4.7658e-01, 2.5971e-03, + 2DIAGNOSTIC, 14, -8.101519579511e-01, 2.227797724440e-04, 4.7885e-01, 2.2712e-03, + 2DIAGNOSTIC, 15, -8.101933797280e-01, 1.803142190305e-04, 4.8146e-01, 2.6050e-03, + 2DIAGNOSTIC, 16, -8.103764522940e-01, 1.390545960933e-04, 4.8400e-01, 2.5420e-03, + 2DIAGNOSTIC, 17, -8.103203206002e-01, 1.033856651566e-04, 4.8629e-01, 2.2941e-03, + 2DIAGNOSTIC, 18, -8.103249559847e-01, 8.940736915267e-05, 4.8916e-01, 2.8691e-03, + 2DIAGNOSTIC, 19, -8.104223466877e-01, 8.532206216605e-05, 4.9134e-01, 2.1751e-03, + 2DIAGNOSTIC, 20, -8.102042448673e-01, 4.877385771224e-05, 4.9394e-01, 2.6040e-03, + 2DIAGNOSTIC, 21, -8.103023644553e-01, 2.872415703579e-05, 4.9636e-01, 2.4209e-03, + 2DIAGNOSTIC, 22, -8.102728630265e-01, 5.211114296744e-06, 4.9908e-01, 2.7211e-03, + 2DIAGNOSTIC, 23, -8.104216138799e-01, 5.191450432089e-06, 5.0145e-01, 2.3692e-03, + 2DIAGNOSTIC, 24, -8.104765082930e-01, 4.881926309278e-06, 5.0434e-01, 2.8820e-03, + 2DIAGNOSTIC, 25, -8.105733761883e-01, 6.163055882538e-06, 5.0690e-01, 2.5671e-03, + 2DIAGNOSTIC, 26, -8.105100993402e-01, 8.543486210155e-06, 5.0922e-01, 2.3150e-03, + 2DIAGNOSTIC, 27, -8.105240176926e-01, 9.520630809258e-06, 5.1159e-01, 2.3730e-03, + 2DIAGNOSTIC, 28, -8.104859251283e-01, 9.146036782127e-06, 5.1458e-01, 2.9931e-03, + 2DIAGNOSTIC, 29, -8.106279058374e-01, 1.100567652769e-05, 5.1729e-01, 2.7070e-03, + 2DIAGNOSTIC, 30, -8.105158555167e-01, 7.860494659007e-06, 5.1968e-01, 2.3861e-03, + 2DIAGNOSTIC, 31, -8.104514767992e-01, 4.753623015386e-06, 5.2273e-01, 3.0489e-03, + 2DIAGNOSTIC, 32, -8.104998751593e-01, 1.705854403837e-06, 5.2538e-01, 2.6529e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.044112142004e-01, 1.797693134862e+308, 7.5695e-01, 2.3157e-01, + 2DIAGNOSTIC, 2, -7.061413842767e-01, 1.797693134862e+308, 7.6968e-01, 1.2735e-02, + 2DIAGNOSTIC, 3, -7.075764846815e-01, 1.797693134862e+308, 7.8360e-01, 1.3916e-02, + 2DIAGNOSTIC, 4, -7.086826474596e-01, 1.797693134862e+308, 7.9625e-01, 1.2651e-02, + 2DIAGNOSTIC, 5, -7.095363837940e-01, 1.797693134862e+308, 8.0921e-01, 1.2961e-02, + 2DIAGNOSTIC, 6, -7.109112644590e-01, 1.797693134862e+308, 8.2250e-01, 1.3293e-02, + 2DIAGNOSTIC, 7, -7.126789094168e-01, 1.797693134862e+308, 8.3538e-01, 1.2882e-02, + 2DIAGNOSTIC, 8, -7.152712930588e-01, 1.797693134862e+308, 8.5646e-01, 2.1075e-02, + 2DIAGNOSTIC, 9, -7.154563634518e-01, 1.797693134862e+308, 8.7105e-01, 1.4590e-02, + 2DIAGNOSTIC, 10, -7.155042093805e-01, 1.072094713236e-03, 8.8399e-01, 1.2938e-02, + 2DIAGNOSTIC, 11, -7.158984775559e-01, 8.897450654618e-04, 9.0181e-01, 1.7825e-02, + 2DIAGNOSTIC, 12, -7.162160618004e-01, 7.244326388315e-04, 9.1707e-01, 1.5263e-02, + 2DIAGNOSTIC, 13, -7.163806208123e-01, 5.670410992512e-04, 9.2995e-01, 1.2875e-02, + 2DIAGNOSTIC, 14, -7.167623890544e-01, 4.237858370912e-04, 9.4702e-01, 1.7068e-02, + 2DIAGNOSTIC, 15, -7.170092044413e-01, 2.910010655097e-04, 9.6613e-01, 1.9109e-02, + 2DIAGNOSTIC, 16, -7.170079774533e-01, 1.820583596183e-04, 9.8320e-01, 1.7078e-02, + 2DIAGNOSTIC, 17, -7.170376362263e-01, 1.099385816495e-04, 9.9999e-01, 1.6787e-02, + 2DIAGNOSTIC, 18, -7.170966381309e-01, 9.457204995118e-05, 1.0155e+00, 1.5477e-02, + 2DIAGNOSTIC, 19, -7.170769611252e-01, 7.568577818363e-05, 1.0302e+00, 1.4761e-02, + 2DIAGNOSTIC, 20, -7.171014131289e-01, 5.308970484643e-05, 1.0433e+00, 1.3022e-02, + 2DIAGNOSTIC, 21, -7.170925964675e-01, 3.513162673301e-05, 1.0582e+00, 1.4935e-02, + 2DIAGNOSTIC, 22, -7.170805704438e-01, 2.126614984251e-05, 1.0750e+00, 1.6823e-02, + 2DIAGNOSTIC, 23, -7.170297262281e-01, 8.580417085041e-06, 1.0899e+00, 1.4859e-02, + 2DIAGNOSTIC, 24, -7.170151867530e-01, 2.280525653119e-06, 1.1048e+00, 1.4948e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.943728181570e-01, 1.797693134862e+308, 1.5374e+00, 4.3257e-01, + 2DIAGNOSTIC, 2, -5.950699641229e-01, 1.797693134862e+308, 1.6287e+00, 9.1328e-02, + 2DIAGNOSTIC, 3, -5.956994722758e-01, 1.797693134862e+308, 1.7210e+00, 9.2312e-02, + 2DIAGNOSTIC, 4, -5.962117948337e-01, 1.797693134862e+308, 1.8133e+00, 9.2309e-02, + 2DIAGNOSTIC, 5, -5.966133557816e-01, 1.797693134862e+308, 1.8953e+00, 8.1927e-02, + 2DIAGNOSTIC, 6, -5.973183296599e-01, 1.797693134862e+308, 1.9999e+00, 1.0461e-01, + 2DIAGNOSTIC, 7, -5.976337580834e-01, 1.797693134862e+308, 2.1477e+00, 1.4780e-01, + 2DIAGNOSTIC, 8, -5.977258664388e-01, 1.797693134862e+308, 2.2428e+00, 9.5080e-02, + 2DIAGNOSTIC, 9, -5.977673218012e-01, 1.797693134862e+308, 2.3395e+00, 9.6772e-02, + 2DIAGNOSTIC, 10, -5.977857223889e-01, 3.829616527132e-04, 2.4776e+00, 1.3807e-01, + 2DIAGNOSTIC, 11, -5.977876132883e-01, 2.715099382241e-04, 2.5877e+00, 1.1008e-01, + 2DIAGNOSTIC, 12, -5.977887135014e-01, 1.817838711039e-04, 2.6999e+00, 1.1219e-01, + 2DIAGNOSTIC, 13, -5.977877691739e-01, 1.126983695993e-04, 2.8102e+00, 1.1029e-01, + 2DIAGNOSTIC, 14, -5.977912992636e-01, 6.106305799014e-05, 2.9190e+00, 1.0884e-01, + 2DIAGNOSTIC, 15, -5.977874411752e-01, 2.308563004653e-05, 3.0492e+00, 1.3021e-01, + 2DIAGNOSTIC, 16, -5.977882097061e-01, 8.720676290958e-06, 3.1600e+00, 1.1082e-01, + 2DIAGNOSTIC, 17, -5.977889816589e-01, 4.228942930784e-06, 3.2710e+00, 1.1099e-01, + 2DIAGNOSTIC, 18, -5.977834631533e-01, 2.282040119574e-06, 3.3658e+00, 9.4750e-02, + 2DIAGNOSTIC, 19, -5.977875208369e-01, 1.624061152991e-06, 3.4730e+00, 1.0723e-01, + 2DIAGNOSTIC, 20, -5.977943088180e-01, 1.631899308518e-06, 3.5756e+00, 1.0260e-01, + 2DIAGNOSTIC, 21, -5.977931139807e-01, 1.646024777126e-06, 3.6917e+00, 1.1611e-01, + 2DIAGNOSTIC, 22, -5.977897074443e-01, 1.601048467081e-06, 3.7925e+00, 1.0079e-01, + 2DIAGNOSTIC, 23, -5.977875783110e-01, 1.484766181628e-06, 3.8951e+00, 1.0259e-01, + 2DIAGNOSTIC, 24, -5.977854516994e-01, 1.397766919438e-06, 3.9941e+00, 9.8957e-02, + 2DIAGNOSTIC, 25, -5.977833097366e-01, 1.192121038218e-06, 4.1001e+00, 1.0599e-01, + 2DIAGNOSTIC, 26, -5.977824985238e-01, 1.008910478759e-06, 4.2058e+00, 1.0574e-01, + Elapsed time (stage 1): 4.3206e+00 + + +Total elapsed time: 8.5207e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:56:40 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:56:40 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55ffdc3ab4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 46.8152, -138.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ffdc3b0fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f11a469a010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55ffdc3ac850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 46.8152, -138.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ffdc3a9f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f11a0fdb010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55ffdc3c3b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 46.8152, -138.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ffdc3b0550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f119d91c010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55ffdc3c8d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 46.8152, -138.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ffdc3c6c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f119a25d010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55ffdc3caf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 46.8152, -138.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ffdc3c93a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f1196b9e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55ffdc3cb540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 46.8152, -138.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ffdc3cb4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f11934df010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.352425233910e-01, 1.797693134862e+308, 2.1190e-01, 2.1190e-01, + 2DIAGNOSTIC, 2, -6.373968183589e-01, 1.797693134862e+308, 2.1380e-01, 1.9000e-03, + 2DIAGNOSTIC, 3, -6.419122851339e-01, 1.797693134862e+308, 2.1564e-01, 1.8411e-03, + 2DIAGNOSTIC, 4, -6.484593580584e-01, 1.797693134862e+308, 2.1752e-01, 1.8711e-03, + 2DIAGNOSTIC, 5, -6.523283292155e-01, 1.797693134862e+308, 2.1956e-01, 2.0468e-03, + 2DIAGNOSTIC, 6, -6.532204891435e-01, 1.797693134862e+308, 2.2141e-01, 1.8451e-03, + 2DIAGNOSTIC, 7, -6.533392433437e-01, 1.797693134862e+308, 2.2325e-01, 1.8470e-03, + 2DIAGNOSTIC, 8, -6.534751071539e-01, 1.797693134862e+308, 2.2536e-01, 2.1079e-03, + 2DIAGNOSTIC, 9, -6.537087105395e-01, 1.797693134862e+308, 2.2840e-01, 3.0351e-03, + 2DIAGNOSTIC, 10, -6.539055149493e-01, 1.908329824788e-03, 2.3054e-01, 2.1441e-03, + 2DIAGNOSTIC, 11, -6.539596025874e-01, 1.248572324122e-03, 2.3267e-01, 2.1281e-03, + 2DIAGNOSTIC, 12, -6.539993196813e-01, 6.684025823771e-04, 2.3477e-01, 2.0981e-03, + 2DIAGNOSTIC, 13, -6.540521613725e-01, 2.674695259894e-04, 2.3671e-01, 1.9410e-03, + 2DIAGNOSTIC, 14, -6.551355097174e-01, 1.352010179826e-04, 2.3983e-01, 3.1228e-03, + 2DIAGNOSTIC, 15, -6.575906108575e-01, 1.911322716266e-04, 2.4391e-01, 4.0810e-03, + 2DIAGNOSTIC, 16, -6.574540114655e-01, 2.417727183387e-04, 2.4687e-01, 2.9569e-03, + 2DIAGNOSTIC, 17, -6.572849354968e-01, 2.643912729729e-04, 2.4967e-01, 2.7969e-03, + 2DIAGNOSTIC, 18, -6.571587491294e-01, 2.613135837528e-04, 2.5217e-01, 2.5079e-03, + 2DIAGNOSTIC, 19, -6.571824537898e-01, 2.396758143544e-04, 2.5464e-01, 2.4660e-03, + 2DIAGNOSTIC, 20, -6.572414742255e-01, 2.025932762273e-04, 2.5703e-01, 2.3921e-03, + 2DIAGNOSTIC, 21, -6.571275819442e-01, 1.492661755247e-04, 2.5909e-01, 2.0590e-03, + 2DIAGNOSTIC, 22, -6.570133009665e-01, 8.673867007726e-05, 2.6114e-01, 2.0509e-03, + 2DIAGNOSTIC, 23, -6.570327265088e-01, 2.310882166245e-05, 2.6343e-01, 2.2900e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.519074540885e-01, 1.797693134862e+308, 4.8737e-01, 2.2394e-01, + 2DIAGNOSTIC, 2, -5.528055203287e-01, 1.797693134862e+308, 5.0042e-01, 1.3050e-02, + 2DIAGNOSTIC, 3, -5.536407933496e-01, 1.797693134862e+308, 5.1357e-01, 1.3148e-02, + 2DIAGNOSTIC, 4, -5.542492898299e-01, 1.797693134862e+308, 5.2823e-01, 1.4664e-02, + 2DIAGNOSTIC, 5, -5.545277756639e-01, 1.797693134862e+308, 5.4323e-01, 1.5000e-02, + 2DIAGNOSTIC, 6, -5.545835272318e-01, 1.797693134862e+308, 5.5736e-01, 1.4130e-02, + 2DIAGNOSTIC, 7, -5.547387406031e-01, 1.797693134862e+308, 5.7209e-01, 1.4726e-02, + 2DIAGNOSTIC, 8, -5.551955367468e-01, 1.797693134862e+308, 5.8674e-01, 1.4655e-02, + 2DIAGNOSTIC, 9, -5.554357534996e-01, 1.797693134862e+308, 6.0866e-01, 2.1912e-02, + 2DIAGNOSTIC, 10, -5.553477164976e-01, 3.655898457763e-04, 6.2194e-01, 1.3287e-02, + 2DIAGNOSTIC, 11, -5.552915509878e-01, 2.428208914265e-04, 6.3917e-01, 1.7227e-02, + 2DIAGNOSTIC, 12, -5.552824755614e-01, 1.564936656718e-04, 6.5575e-01, 1.6577e-02, + 2DIAGNOSTIC, 13, -5.552810958655e-01, 1.015018349696e-04, 6.6899e-01, 1.3248e-02, + 2DIAGNOSTIC, 14, -5.552743636919e-01, 6.700009972700e-05, 6.8237e-01, 1.3380e-02, + 2DIAGNOSTIC, 15, -5.552943346026e-01, 4.168425821677e-05, 6.9930e-01, 1.6926e-02, + 2DIAGNOSTIC, 16, -5.553092279949e-01, 1.835137181681e-05, 7.1428e-01, 1.4984e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.672839036993e-01, 1.797693134862e+308, 1.0978e+00, 3.8349e-01, + 2DIAGNOSTIC, 2, -4.678055042906e-01, 1.797693134862e+308, 1.1953e+00, 9.7540e-02, + 2DIAGNOSTIC, 3, -4.683196113721e-01, 1.797693134862e+308, 1.2893e+00, 9.4003e-02, + 2DIAGNOSTIC, 4, -4.686032075584e-01, 1.797693134862e+308, 1.4077e+00, 1.1839e-01, + 2DIAGNOSTIC, 5, -4.685998480383e-01, 1.797693134862e+308, 1.5518e+00, 1.4411e-01, + 2DIAGNOSTIC, 6, -4.686029089473e-01, 1.797693134862e+308, 1.6567e+00, 1.0487e-01, + 2DIAGNOSTIC, 7, -4.686023497996e-01, 1.797693134862e+308, 1.7617e+00, 1.0499e-01, + 2DIAGNOSTIC, 8, -4.685980016194e-01, 1.797693134862e+308, 1.8660e+00, 1.0437e-01, + 2DIAGNOSTIC, 9, -4.685961724515e-01, 1.797693134862e+308, 1.9864e+00, 1.2038e-01, + 2DIAGNOSTIC, 10, -4.685951650724e-01, 1.365333364374e-04, 2.0939e+00, 1.0742e-01, + 2DIAGNOSTIC, 11, -4.685971789325e-01, 5.951659821556e-05, 2.2107e+00, 1.1685e-01, + 2DIAGNOSTIC, 12, -4.685957935746e-01, 1.598896760413e-05, 2.3569e+00, 1.4617e-01, + 2DIAGNOSTIC, 13, -4.685964113219e-01, 1.606942284904e-06, 2.4619e+00, 1.0501e-01, + 2DIAGNOSTIC, 14, -4.685957844151e-01, 1.627466871656e-06, 2.5539e+00, 9.2024e-02, + 2DIAGNOSTIC, 15, -4.685915786950e-01, 1.392270844489e-06, 2.6588e+00, 1.0489e-01, + 2DIAGNOSTIC, 16, -4.685910166880e-01, 1.349296758713e-06, 2.7650e+00, 1.0625e-01, + 2DIAGNOSTIC, 17, -4.685917213985e-01, 1.377398524134e-06, 2.8713e+00, 1.0627e-01, + 2DIAGNOSTIC, 18, -4.685908778316e-01, 1.272208602805e-06, 2.9766e+00, 1.0524e-01, + 2DIAGNOSTIC, 19, -4.685886109965e-01, 1.095720124265e-06, 3.0814e+00, 1.0487e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.099527598469e-01, 1.797693134862e+308, 4.3338e+00, 1.2524e+00, + 2DIAGNOSTIC, 2, -4.099826555854e-01, 1.797693134862e+308, 4.8497e+00, 5.1594e-01, + 2DIAGNOSTIC, 3, -4.100089044497e-01, 1.797693134862e+308, 5.3386e+00, 4.8891e-01, + 2DIAGNOSTIC, 4, -4.100430755073e-01, 1.797693134862e+308, 5.9067e+00, 5.6804e-01, + 2DIAGNOSTIC, 5, -4.100519338479e-01, 1.797693134862e+308, 6.4532e+00, 5.4652e-01, + 2DIAGNOSTIC, 6, -4.100492820738e-01, 1.797693134862e+308, 7.0604e+00, 6.0714e-01, + 2DIAGNOSTIC, 7, -4.100483152248e-01, 1.797693134862e+308, 7.5950e+00, 5.3469e-01, + 2DIAGNOSTIC, 8, -4.100487920753e-01, 1.797693134862e+308, 8.1990e+00, 6.0396e-01, + 2DIAGNOSTIC, 9, -4.100440361090e-01, 1.797693134862e+308, 9.4267e+00, 1.2277e+00, + 2DIAGNOSTIC, 10, -4.100442647941e-01, 1.532107025468e-05, 1.0018e+01, 5.9147e-01, + 2DIAGNOSTIC, 11, -4.100441604112e-01, 8.653939237713e-06, 1.0739e+01, 7.2062e-01, + 2DIAGNOSTIC, 12, -4.100442438589e-01, 4.298981153519e-06, 1.1341e+01, 6.0241e-01, + 2DIAGNOSTIC, 13, -4.100438563332e-01, 1.795987319544e-06, 1.2022e+01, 6.8108e-01, + 2DIAGNOSTIC, 14, -4.100438808703e-01, 1.392143888349e-06, 1.2611e+01, 5.8828e-01, + 2DIAGNOSTIC, 15, -4.100437553347e-01, 1.529845981410e-06, 1.3171e+01, 5.6033e-01, + 2DIAGNOSTIC, 16, -4.100437918966e-01, 1.589234395263e-06, 1.3748e+01, 5.7688e-01, + 2DIAGNOSTIC, 17, -4.100436769675e-01, 1.631441695647e-06, 1.4285e+01, 5.3740e-01, + 2DIAGNOSTIC, 18, -4.100437315339e-01, 1.717167188123e-06, 1.4774e+01, 4.8931e-01, + 2DIAGNOSTIC, 19, -4.100436493802e-01, 1.621745742253e-06, 1.5277e+01, 5.0208e-01, + 2DIAGNOSTIC, 20, -4.100434649451e-01, 1.542302840614e-06, 1.5817e+01, 5.4087e-01, + 2DIAGNOSTIC, 21, -4.100436502701e-01, 1.477550111907e-06, 1.6389e+01, 5.7157e-01, + 2DIAGNOSTIC, 22, -4.100439167886e-01, 1.433252583768e-06, 1.6870e+01, 4.8137e-01, + 2DIAGNOSTIC, 23, -4.100439713365e-01, 1.383651330185e-06, 1.7453e+01, 5.8255e-01, + 2DIAGNOSTIC, 24, -4.100438070549e-01, 1.334344497853e-06, 1.8026e+01, 5.7341e-01, + 2DIAGNOSTIC, 25, -4.100434494707e-01, 1.275053037382e-06, 1.8565e+01, 5.3835e-01, + 2DIAGNOSTIC, 26, -4.100433564883e-01, 1.218792250603e-06, 1.9077e+01, 5.1206e-01, + 2DIAGNOSTIC, 27, -4.100433008956e-01, 1.162370306472e-06, 1.9608e+01, 5.3079e-01, + 2DIAGNOSTIC, 28, -4.100432843535e-01, 1.112322536474e-06, 2.0152e+01, 5.4418e-01, + 2DIAGNOSTIC, 29, -4.100432104858e-01, 1.064577787903e-06, 2.0744e+01, 5.9201e-01, + 2DIAGNOSTIC, 30, -4.100432301580e-01, 1.019423210104e-06, 2.1507e+01, 7.6354e-01, + Elapsed time (stage 0): 2.1828e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.448857360558e-01, 1.797693134862e+308, 1.7853e-01, 1.7853e-01, + 2DIAGNOSTIC, 2, -6.464045529662e-01, 1.797693134862e+308, 1.8052e-01, 1.9870e-03, + 2DIAGNOSTIC, 3, -6.484371126793e-01, 1.797693134862e+308, 1.8262e-01, 2.0969e-03, + 2DIAGNOSTIC, 4, -6.508499473503e-01, 1.797693134862e+308, 1.8463e-01, 2.0111e-03, + 2DIAGNOSTIC, 5, -6.540000922783e-01, 1.797693134862e+308, 1.8679e-01, 2.1591e-03, + 2DIAGNOSTIC, 6, -6.571910923202e-01, 1.797693134862e+308, 1.8879e-01, 1.9991e-03, + 2DIAGNOSTIC, 7, -6.608447257390e-01, 1.797693134862e+308, 1.9119e-01, 2.4049e-03, + 2DIAGNOSTIC, 8, -6.629245692347e-01, 1.797693134862e+308, 1.9337e-01, 2.1820e-03, + 2DIAGNOSTIC, 9, -6.636692352225e-01, 1.797693134862e+308, 1.9536e-01, 1.9829e-03, + 2DIAGNOSTIC, 10, -6.662763009367e-01, 2.250602542019e-03, 1.9907e-01, 3.7119e-03, + 2DIAGNOSTIC, 11, -6.662591669712e-01, 1.939530019094e-03, 2.0169e-01, 2.6190e-03, + 2DIAGNOSTIC, 12, -6.662664484434e-01, 1.562013744966e-03, 2.0437e-01, 2.6839e-03, + 2DIAGNOSTIC, 13, -6.661791422503e-01, 1.167675324881e-03, 2.0687e-01, 2.5020e-03, + 2DIAGNOSTIC, 14, -6.661084091464e-01, 7.961578068653e-04, 2.0914e-01, 2.2671e-03, + 2DIAGNOSTIC, 15, -6.659355083182e-01, 4.861804413195e-04, 2.1167e-01, 2.5260e-03, + 2DIAGNOSTIC, 16, -6.660605418306e-01, 2.582749689394e-04, 2.1410e-01, 2.4371e-03, + 2DIAGNOSTIC, 17, -6.659233257827e-01, 1.225694834626e-04, 2.1622e-01, 2.1160e-03, + 2DIAGNOSTIC, 18, -6.658149188855e-01, 3.841476754465e-05, 2.1860e-01, 2.3820e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.596592901078e-01, 1.797693134862e+308, 4.3520e-01, 2.1660e-01, + 2DIAGNOSTIC, 2, -5.603681110204e-01, 1.797693134862e+308, 4.5051e-01, 1.5304e-02, + 2DIAGNOSTIC, 3, -5.610747498415e-01, 1.797693134862e+308, 4.6465e-01, 1.4147e-02, + 2DIAGNOSTIC, 4, -5.615410026446e-01, 1.797693134862e+308, 4.7975e-01, 1.5096e-02, + 2DIAGNOSTIC, 5, -5.618646165212e-01, 1.797693134862e+308, 4.9455e-01, 1.4803e-02, + 2DIAGNOSTIC, 6, -5.619891536435e-01, 1.797693134862e+308, 5.0942e-01, 1.4870e-02, + 2DIAGNOSTIC, 7, -5.623296123468e-01, 1.797693134862e+308, 5.2805e-01, 1.8628e-02, + 2DIAGNOSTIC, 8, -5.623419622998e-01, 1.797693134862e+308, 5.4454e-01, 1.6491e-02, + 2DIAGNOSTIC, 9, -5.624409890814e-01, 1.797693134862e+308, 5.6341e-01, 1.8870e-02, + 2DIAGNOSTIC, 10, -5.625933268941e-01, 3.079948646491e-04, 5.8939e-01, 2.5976e-02, + 2DIAGNOSTIC, 11, -5.626069410948e-01, 2.087997907879e-04, 6.0446e-01, 1.5076e-02, + 2DIAGNOSTIC, 12, -5.626552948702e-01, 1.390926388687e-04, 6.1950e-01, 1.5033e-02, + 2DIAGNOSTIC, 13, -5.626979176939e-01, 9.664843669552e-05, 6.3471e-01, 1.5218e-02, + 2DIAGNOSTIC, 14, -5.627338966401e-01, 6.968701898349e-05, 6.4955e-01, 1.4834e-02, + 2DIAGNOSTIC, 15, -5.627684297147e-01, 5.217956292672e-05, 6.6457e-01, 1.5025e-02, + 2DIAGNOSTIC, 16, -5.628136038173e-01, 3.735762140623e-05, 6.8009e-01, 1.5513e-02, + 2DIAGNOSTIC, 17, -5.628837198464e-01, 3.329750192478e-05, 7.0216e-01, 2.2072e-02, + 2DIAGNOSTIC, 18, -5.629004247284e-01, 2.752615399162e-05, 7.1788e-01, 1.5719e-02, + 2DIAGNOSTIC, 19, -5.629020453414e-01, 2.256914539340e-05, 7.3552e-01, 1.7646e-02, + 2DIAGNOSTIC, 20, -5.629032263817e-01, 2.008034011939e-05, 7.4984e-01, 1.4317e-02, + 2DIAGNOSTIC, 21, -5.629044678446e-01, 1.643576059662e-05, 7.6413e-01, 1.4287e-02, + 2DIAGNOSTIC, 22, -5.629066025462e-01, 1.285240796502e-05, 7.7927e-01, 1.5145e-02, + 2DIAGNOSTIC, 23, -5.629084370653e-01, 9.480923663284e-06, 7.9888e-01, 1.9611e-02, + 2DIAGNOSTIC, 24, -5.629087522322e-01, 6.408671859824e-06, 8.2024e-01, 2.1361e-02, + 2DIAGNOSTIC, 25, -5.629087531613e-01, 3.800164894312e-06, 8.6839e-01, 4.8150e-02, + 2DIAGNOSTIC, 26, -5.629087531610e-01, 1.998322544813e-06, 9.0500e-01, 3.6607e-02, + 2DIAGNOSTIC, 27, -5.629087531610e-01, 1.560544866053e-06, 9.2336e-01, 1.8356e-02, + 2DIAGNOSTIC, 28, -5.629087531610e-01, 1.418652669852e-06, 9.4128e-01, 1.7927e-02, + 2DIAGNOSTIC, 29, -5.629087531610e-01, 1.288267796259e-06, 9.5888e-01, 1.7592e-02, + 2DIAGNOSTIC, 30, -5.629087531610e-01, 1.168788487813e-06, 9.7734e-01, 1.8460e-02, + 2DIAGNOSTIC, 31, -5.629087531610e-01, 1.066523782435e-06, 9.9345e-01, 1.6111e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.684630074608e-01, 1.797693134862e+308, 1.3675e+00, 3.7404e-01, + 2DIAGNOSTIC, 2, -4.690017061880e-01, 1.797693134862e+308, 1.4682e+00, 1.0075e-01, + 2DIAGNOSTIC, 3, -4.695756990186e-01, 1.797693134862e+308, 1.5742e+00, 1.0594e-01, + 2DIAGNOSTIC, 4, -4.699643127277e-01, 1.797693134862e+308, 1.6742e+00, 1.0001e-01, + 2DIAGNOSTIC, 5, -4.700468099844e-01, 1.797693134862e+308, 1.7750e+00, 1.0082e-01, + 2DIAGNOSTIC, 6, -4.701121553437e-01, 1.797693134862e+308, 1.8757e+00, 1.0066e-01, + 2DIAGNOSTIC, 7, -4.703602757575e-01, 1.797693134862e+308, 2.0444e+00, 1.6870e-01, + 2DIAGNOSTIC, 8, -4.703854046844e-01, 1.797693134862e+308, 2.2005e+00, 1.5613e-01, + 2DIAGNOSTIC, 9, -4.703802351140e-01, 1.797693134862e+308, 2.3490e+00, 1.4856e-01, + 2DIAGNOSTIC, 10, -4.703800674516e-01, 2.382051707624e-04, 2.4483e+00, 9.9239e-02, + 2DIAGNOSTIC, 11, -4.703768636583e-01, 1.441412173155e-04, 2.5475e+00, 9.9226e-02, + 2DIAGNOSTIC, 12, -4.703749093216e-01, 7.940202332792e-05, 2.6543e+00, 1.0675e-01, + 2DIAGNOSTIC, 13, -4.703740420475e-01, 4.387778812077e-05, 2.7565e+00, 1.0229e-01, + 2DIAGNOSTIC, 14, -4.703735094428e-01, 2.653580128235e-05, 2.8851e+00, 1.2857e-01, + 2DIAGNOSTIC, 15, -4.703738823684e-01, 1.269528601752e-05, 2.9869e+00, 1.0174e-01, + 2DIAGNOSTIC, 16, -4.703717938021e-01, 1.747418992018e-06, 3.0860e+00, 9.9171e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.098119037440e-01, 1.797693134862e+308, 4.3729e+00, 1.2869e+00, + 2DIAGNOSTIC, 2, -4.100433823094e-01, 1.797693134862e+308, 4.9380e+00, 5.6503e-01, + 2DIAGNOSTIC, 3, -4.102268736842e-01, 1.797693134862e+308, 5.5424e+00, 6.0447e-01, + 2DIAGNOSTIC, 4, -4.103405140262e-01, 1.797693134862e+308, 6.1554e+00, 6.1299e-01, + 2DIAGNOSTIC, 5, -4.106461857570e-01, 1.797693134862e+308, 6.8303e+00, 6.7487e-01, + 2DIAGNOSTIC, 6, -4.112474235015e-01, 1.797693134862e+308, 8.1778e+00, 1.3475e+00, + 2DIAGNOSTIC, 7, -4.112455771629e-01, 1.797693134862e+308, 9.0769e+00, 8.9910e-01, + 2DIAGNOSTIC, 8, -4.112453066237e-01, 1.797693134862e+308, 9.7216e+00, 6.4471e-01, + 2DIAGNOSTIC, 9, -4.112450544732e-01, 1.797693134862e+308, 1.0512e+01, 7.9028e-01, + 2DIAGNOSTIC, 10, -4.112443938875e-01, 2.605372458390e-04, 1.1125e+01, 6.1347e-01, + 2DIAGNOSTIC, 11, -4.112444483617e-01, 1.918693301452e-04, 1.1777e+01, 6.5162e-01, + 2DIAGNOSTIC, 12, -4.112442221197e-01, 1.309812966280e-04, 1.2465e+01, 6.8822e-01, + 2DIAGNOSTIC, 13, -4.112436267722e-01, 7.816118559735e-05, 1.3147e+01, 6.8180e-01, + 2DIAGNOSTIC, 14, -4.112438013503e-01, 3.156532958941e-05, 1.3804e+01, 6.5729e-01, + 2DIAGNOSTIC, 15, -4.112438097185e-01, 1.812368838935e-06, 1.4462e+01, 6.5728e-01, + 2DIAGNOSTIC, 16, -4.112437282659e-01, 1.798094732927e-06, 1.5238e+01, 7.7653e-01, + 2DIAGNOSTIC, 17, -4.112435977370e-01, 1.722919514002e-06, 1.5925e+01, 6.8647e-01, + 2DIAGNOSTIC, 18, -4.112435363781e-01, 1.657683487526e-06, 1.6597e+01, 6.7209e-01, + 2DIAGNOSTIC, 19, -4.112433707769e-01, 1.594888353773e-06, 1.7286e+01, 6.8941e-01, + 2DIAGNOSTIC, 20, -4.112434668671e-01, 1.525894381398e-06, 1.7966e+01, 6.8008e-01, + 2DIAGNOSTIC, 21, -4.112433873183e-01, 1.468702473639e-06, 1.8617e+01, 6.5119e-01, + 2DIAGNOSTIC, 22, -4.112432511455e-01, 1.410422222008e-06, 1.9176e+01, 5.5856e-01, + 2DIAGNOSTIC, 23, -4.112432240567e-01, 1.341908734832e-06, 1.9783e+01, 6.0698e-01, + 2DIAGNOSTIC, 24, -4.112436779763e-01, 1.301058361082e-06, 2.0505e+01, 7.2222e-01, + 2DIAGNOSTIC, 25, -4.112438056456e-01, 1.269136409451e-06, 2.1162e+01, 6.5729e-01, + 2DIAGNOSTIC, 26, -4.112437412631e-01, 1.236243785396e-06, 2.1807e+01, 6.4425e-01, + 2DIAGNOSTIC, 27, -4.112436476928e-01, 1.199280430630e-06, 2.2473e+01, 6.6589e-01, + 2DIAGNOSTIC, 28, -4.112435478203e-01, 1.159229143913e-06, 2.3075e+01, 6.0245e-01, + 2DIAGNOSTIC, 29, -4.112431868126e-01, 1.106930314285e-06, 2.3773e+01, 6.9781e-01, + 2DIAGNOSTIC, 30, -4.112432453496e-01, 1.060874967068e-06, 2.4391e+01, 6.1820e-01, + 2DIAGNOSTIC, 31, -4.112431974610e-01, 1.015035958715e-06, 2.5069e+01, 6.7832e-01, + Elapsed time (stage 1): 2.5455e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.088860114481e-01, 1.797693134862e+308, 2.4955e-01, 2.4954e-01, + 1DIAGNOSTIC, 2, -9.227842758329e-01, 1.797693134862e+308, 3.5145e-01, 1.0190e-01, + 1DIAGNOSTIC, 3, -9.335286864364e-01, 1.797693134862e+308, 4.4550e-01, 9.4051e-02, + 1DIAGNOSTIC, 4, -9.412911256841e-01, 1.797693134862e+308, 5.4142e-01, 9.5922e-02, + 1DIAGNOSTIC, 5, -9.468086997130e-01, 1.797693134862e+308, 6.3997e-01, 9.8552e-02, + 1DIAGNOSTIC, 6, -9.501355794863e-01, 1.797693134862e+308, 7.3465e-01, 9.4683e-02, + 1DIAGNOSTIC, 7, -9.526675984702e-01, 1.797693134862e+308, 8.3824e-01, 1.0359e-01, + 1DIAGNOSTIC, 8, -9.544155610330e-01, 1.797693134862e+308, 9.3847e-01, 1.0023e-01, + 1DIAGNOSTIC, 9, -9.553835822439e-01, 1.797693134862e+308, 1.0311e+00, 9.2640e-02, + 1DIAGNOSTIC, 10, -9.553659107877e-01, 2.883656635619e-03, 1.1272e+00, 9.6132e-02, + 1DIAGNOSTIC, 11, -9.556040520506e-01, 1.804023430137e-03, 1.2249e+00, 9.7612e-02, + 1DIAGNOSTIC, 12, -9.554504701459e-01, 1.085418102049e-03, 1.3195e+00, 9.4599e-02, + 1DIAGNOSTIC, 13, -9.557274642103e-01, 6.326166937315e-04, 1.4176e+00, 9.8180e-02, + 1DIAGNOSTIC, 14, -9.556058575955e-01, 3.496878276970e-04, 1.5180e+00, 1.0040e-01, + 1DIAGNOSTIC, 15, -9.557710690605e-01, 1.861645147873e-04, 1.6119e+00, 9.3827e-02, + 1DIAGNOSTIC, 16, -9.556120299731e-01, 8.504498055475e-05, 1.7069e+00, 9.5034e-02, + 1DIAGNOSTIC, 17, -9.558124992698e-01, 3.589261005535e-05, 1.8047e+00, 9.7833e-02, + 1DIAGNOSTIC, 18, -9.556543605004e-01, 1.503705090355e-05, 1.9023e+00, 9.7557e-02, + 1DIAGNOSTIC, 19, -9.558517684894e-01, 1.363241617895e-05, 1.9973e+00, 9.5014e-02, + 1DIAGNOSTIC, 20, -9.556903249933e-01, 8.425104777700e-06, 2.0901e+00, 9.2827e-02, + 1DIAGNOSTIC, 21, -9.559526826389e-01, 1.038111837593e-05, 2.1882e+00, 9.8068e-02, + 1DIAGNOSTIC, 22, -9.558540552762e-01, 7.694399108672e-06, 2.2807e+00, 9.2519e-02, + 1DIAGNOSTIC, 23, -9.560965731799e-01, 1.151409210524e-05, 2.3798e+00, 9.9138e-02, + 1DIAGNOSTIC, 24, -9.560305176420e-01, 1.160922760312e-05, 2.4816e+00, 1.0171e-01, + 1DIAGNOSTIC, 25, -9.562111681628e-01, 1.497208464279e-05, 2.5810e+00, 9.9474e-02, + 1DIAGNOSTIC, 26, -9.560889035834e-01, 1.343870665918e-05, 2.6722e+00, 9.1204e-02, + 1DIAGNOSTIC, 27, -9.563118903625e-01, 1.565362032702e-05, 2.7633e+00, 9.1025e-02, + 1DIAGNOSTIC, 28, -9.561728879858e-01, 1.304858141601e-05, 2.8596e+00, 9.6303e-02, + 1DIAGNOSTIC, 29, -9.563850487585e-01, 1.382673823309e-05, 2.9601e+00, 1.0050e-01, + 1DIAGNOSTIC, 30, -9.562272946813e-01, 1.005969883194e-05, 3.0594e+00, 9.9387e-02, + 1DIAGNOSTIC, 31, -9.564374797996e-01, 1.033534430994e-05, 3.1552e+00, 9.5761e-02, + 1DIAGNOSTIC, 32, -9.562685140066e-01, 7.102531539516e-06, 3.2503e+00, 9.5134e-02, + 1DIAGNOSTIC, 33, -9.564797282230e-01, 7.661922194563e-06, 3.3432e+00, 9.2869e-02, + 1DIAGNOSTIC, 34, -9.563024292463e-01, 5.327053568857e-06, 3.4377e+00, 9.4440e-02, + 1DIAGNOSTIC, 35, -9.565109777965e-01, 6.113012991839e-06, 3.5399e+00, 1.0222e-01, + 1DIAGNOSTIC, 36, -9.563934562550e-01, 4.276537125550e-06, 3.6453e+00, 1.0542e-01, + 1DIAGNOSTIC, 37, -9.565223064815e-01, 5.121519184390e-06, 3.7464e+00, 1.0110e-01, + 1DIAGNOSTIC, 38, -9.563953610323e-01, 3.360988563409e-06, 3.8495e+00, 1.0308e-01, + 1DIAGNOSTIC, 39, -9.565670352082e-01, 4.456257234702e-06, 3.9444e+00, 9.4957e-02, + 1DIAGNOSTIC, 40, -9.563814395534e-01, 2.503995953626e-06, 4.0425e+00, 9.8114e-02, + 1DIAGNOSTIC, 41, -9.565514949122e-01, 3.327790094411e-06, 4.1476e+00, 1.0503e-01, + 1DIAGNOSTIC, 42, -9.563620195116e-01, 1.249670012169e-06, 4.2468e+00, 9.9270e-02, + 1DIAGNOSTIC, 43, -9.565290810914e-01, 1.922908892466e-06, 4.3464e+00, 9.9569e-02, + 1DIAGNOSTIC, 44, -9.563413202516e-01, -9.842470623245e-08, 4.4490e+00, 1.0258e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.180131913753e-01, 1.797693134862e+308, 5.2894e+00, 8.4045e-01, + 1DIAGNOSTIC, 2, -9.224505430174e-01, 1.797693134862e+308, 5.9692e+00, 6.7979e-01, + 1DIAGNOSTIC, 3, -9.268864617177e-01, 1.797693134862e+308, 6.6371e+00, 6.6790e-01, + 1DIAGNOSTIC, 4, -9.304981799539e-01, 1.797693134862e+308, 7.3012e+00, 6.6411e-01, + 1DIAGNOSTIC, 5, -9.330572143709e-01, 1.797693134862e+308, 7.9680e+00, 6.6678e-01, + 1DIAGNOSTIC, 6, -9.353515551447e-01, 1.797693134862e+308, 8.6309e+00, 6.6288e-01, + 1DIAGNOSTIC, 7, -9.372932814388e-01, 1.797693134862e+308, 9.2782e+00, 6.4731e-01, + 1DIAGNOSTIC, 8, -9.392937138268e-01, 1.797693134862e+308, 9.9215e+00, 6.4333e-01, + 1DIAGNOSTIC, 9, -9.409852287654e-01, 1.797693134862e+308, 1.0572e+01, 6.5054e-01, + 1DIAGNOSTIC, 10, -9.425816649023e-01, 1.618991410370e-03, 1.1215e+01, 6.4284e-01, + 1DIAGNOSTIC, 11, -9.439627025264e-01, 1.270834532038e-03, 1.1860e+01, 6.4479e-01, + 1DIAGNOSTIC, 12, -9.451566570131e-01, 1.008198715805e-03, 1.2528e+01, 6.6867e-01, + 1DIAGNOSTIC, 13, -9.460582941742e-01, 8.186267118429e-04, 1.3177e+01, 6.4814e-01, + 1DIAGNOSTIC, 14, -9.468539210880e-01, 6.768950793881e-04, 1.3809e+01, 6.3291e-01, + 1DIAGNOSTIC, 15, -9.475689187396e-01, 5.580706521357e-04, 1.4474e+01, 6.6487e-01, + 1DIAGNOSTIC, 16, -9.480841812303e-01, 4.558742087644e-04, 1.5143e+01, 6.6865e-01, + 1DIAGNOSTIC, 17, -9.485308512355e-01, 3.660263029584e-04, 1.5801e+01, 6.5849e-01, + 1DIAGNOSTIC, 18, -9.488965649589e-01, 2.920174852413e-04, 1.6464e+01, 6.6227e-01, + 1DIAGNOSTIC, 19, -9.492681132160e-01, 2.314281051228e-04, 1.7135e+01, 6.7168e-01, + 1DIAGNOSTIC, 20, -9.497202628218e-01, 1.861853723125e-04, 1.7793e+01, 6.5792e-01, + 1DIAGNOSTIC, 21, -9.500629094189e-01, 1.525352444647e-04, 1.8461e+01, 6.6733e-01, + 1DIAGNOSTIC, 22, -9.503497161749e-01, 1.280206086208e-04, 1.9132e+01, 6.7152e-01, + 1DIAGNOSTIC, 23, -9.505843635885e-01, 1.085820594676e-04, 1.9797e+01, 6.6486e-01, + 1DIAGNOSTIC, 24, -9.507824874207e-01, 9.305378480805e-05, 2.0455e+01, 6.5819e-01, + 1DIAGNOSTIC, 25, -9.509587604832e-01, 8.078055520933e-05, 2.1124e+01, 6.6844e-01, + 1DIAGNOSTIC, 26, -9.511249269966e-01, 6.977582238168e-05, 2.1787e+01, 6.6346e-01, + 1DIAGNOSTIC, 27, -9.512635506606e-01, 5.961767598737e-05, 2.2460e+01, 6.7247e-01, + 1DIAGNOSTIC, 28, -9.513797747926e-01, 4.982041089564e-05, 2.3124e+01, 6.6394e-01, + 1DIAGNOSTIC, 29, -9.514802464816e-01, 4.092931851610e-05, 2.3780e+01, 6.5644e-01, + 1DIAGNOSTIC, 30, -9.515804955459e-01, 3.435574162815e-05, 2.4443e+01, 6.6297e-01, + 1DIAGNOSTIC, 31, -9.516697322413e-01, 2.919683820190e-05, 2.5106e+01, 6.6319e-01, + 1DIAGNOSTIC, 32, -9.517430476821e-01, 2.503945978342e-05, 2.5773e+01, 6.6732e-01, + 1DIAGNOSTIC, 33, -9.518173252175e-01, 2.164550438125e-05, 2.6414e+01, 6.4074e-01, + 1DIAGNOSTIC, 34, -9.518873607072e-01, 1.883601469380e-05, 2.7081e+01, 6.6729e-01, + 1DIAGNOSTIC, 35, -9.519508140981e-01, 1.651844785557e-05, 2.7742e+01, 6.6095e-01, + 1DIAGNOSTIC, 36, -9.519992861834e-01, 1.461628752402e-05, 2.8405e+01, 6.6279e-01, + 1DIAGNOSTIC, 37, -9.520511607416e-01, 1.304486908377e-05, 2.9076e+01, 6.7102e-01, + 1DIAGNOSTIC, 38, -9.521006052245e-01, 1.169278491300e-05, 2.9748e+01, 6.7169e-01, + 1DIAGNOSTIC, 39, -9.521461424454e-01, 1.048414859174e-05, 3.0416e+01, 6.6764e-01, + 1DIAGNOSTIC, 40, -9.521866778396e-01, 9.458811985063e-06, 3.1080e+01, 6.6463e-01, + 1DIAGNOSTIC, 41, -9.522225437203e-01, 8.566287997464e-06, 3.1743e+01, 6.6328e-01, + 1DIAGNOSTIC, 42, -9.522560027728e-01, 7.727770794667e-06, 3.2386e+01, 6.4225e-01, + 1DIAGNOSTIC, 43, -9.522903045887e-01, 7.010976048234e-06, 3.3026e+01, 6.4028e-01, + 1DIAGNOSTIC, 44, -9.523153627504e-01, 6.366928027021e-06, 3.3690e+01, 6.6447e-01, + 1DIAGNOSTIC, 45, -9.523469041902e-01, 5.841568234983e-06, 3.4348e+01, 6.5747e-01, + 1DIAGNOSTIC, 46, -9.523769049904e-01, 5.353521320695e-06, 3.5019e+01, 6.7088e-01, + 1DIAGNOSTIC, 47, -9.524067040992e-01, 4.955117780904e-06, 3.5688e+01, 6.6879e-01, + 1DIAGNOSTIC, 48, -9.524338493066e-01, 4.636726491952e-06, 3.6369e+01, 6.8111e-01, + 1DIAGNOSTIC, 49, -9.524594384662e-01, 4.381890653431e-06, 3.7031e+01, 6.6234e-01, + 1DIAGNOSTIC, 50, -9.524839646005e-01, 4.166034837376e-06, 3.7664e+01, 6.3341e-01, + 1DIAGNOSTIC, 51, -9.525069352436e-01, 3.961883576091e-06, 3.8323e+01, 6.5884e-01, + 1DIAGNOSTIC, 52, -9.525284508931e-01, 3.758156096857e-06, 3.8964e+01, 6.4066e-01, + 1DIAGNOSTIC, 53, -9.525463139617e-01, 3.553247585282e-06, 3.9645e+01, 6.8124e-01, + 1DIAGNOSTIC, 54, -9.525531936780e-01, 3.247105731539e-06, 4.0321e+01, 6.7553e-01, + 1DIAGNOSTIC, 55, -9.525725302058e-01, 2.973109563632e-06, 4.0985e+01, 6.6430e-01, + 1DIAGNOSTIC, 56, -9.525886959760e-01, 2.721896798959e-06, 4.1648e+01, 6.6341e-01, + 1DIAGNOSTIC, 57, -9.526031639298e-01, 2.502048566472e-06, 4.2319e+01, 6.7051e-01, + 1DIAGNOSTIC, 58, -9.526174749428e-01, 2.315619143982e-06, 4.2991e+01, 6.7156e-01, + 1DIAGNOSTIC, 59, -9.526289755599e-01, 2.152836904860e-06, 4.3645e+01, 6.5462e-01, + 1DIAGNOSTIC, 60, -9.526386514526e-01, 2.009255829154e-06, 4.4315e+01, 6.6939e-01, + 1DIAGNOSTIC, 61, -9.526507502809e-01, 1.897784145305e-06, 4.4986e+01, 6.7156e-01, + 1DIAGNOSTIC, 62, -9.526612114083e-01, 1.809835924849e-06, 4.5650e+01, 6.6382e-01, + 1DIAGNOSTIC, 63, -9.526712991003e-01, 1.732917780661e-06, 4.6289e+01, 6.3863e-01, + 1DIAGNOSTIC, 64, -9.526783489076e-01, 1.603894333131e-06, 4.6954e+01, 6.6527e-01, + 1DIAGNOSTIC, 65, -9.526866520509e-01, 1.498918215638e-06, 4.7620e+01, 6.6660e-01, + 1DIAGNOSTIC, 66, -9.526948747831e-01, 1.409375862488e-06, 4.8285e+01, 6.6464e-01, + 1DIAGNOSTIC, 67, -9.527032884525e-01, 1.333944286412e-06, 4.8944e+01, 6.5935e-01, + 1DIAGNOSTIC, 68, -9.527043893345e-01, 1.244918577427e-06, 4.9586e+01, 6.4158e-01, + 1DIAGNOSTIC, 69, -9.527080988236e-01, 1.150056461381e-06, 5.0234e+01, 6.4826e-01, + 1DIAGNOSTIC, 70, -9.527141533255e-01, 1.058103330429e-06, 5.0869e+01, 6.3490e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.095214270530e-01, 1.797693134862e+308, 5.6484e+01, 5.6152e+00, + 1DIAGNOSTIC, 2, -9.128934519897e-01, 1.797693134862e+308, 6.1824e+01, 5.3393e+00, + 1DIAGNOSTIC, 3, -9.164323549100e-01, 1.797693134862e+308, 6.7181e+01, 5.3574e+00, + 1DIAGNOSTIC, 4, -9.197221232710e-01, 1.797693134862e+308, 7.2494e+01, 5.3130e+00, + 1DIAGNOSTIC, 5, -9.226038166706e-01, 1.797693134862e+308, 7.7858e+01, 5.3636e+00, + 1DIAGNOSTIC, 6, -9.250559514363e-01, 1.797693134862e+308, 8.3211e+01, 5.3537e+00, + 1DIAGNOSTIC, 7, -9.270181224049e-01, 1.797693134862e+308, 8.8592e+01, 5.3808e+00, + 1DIAGNOSTIC, 8, -9.286575374835e-01, 1.797693134862e+308, 9.3941e+01, 5.3487e+00, + 1DIAGNOSTIC, 9, -9.300662146663e-01, 1.797693134862e+308, 9.9357e+01, 5.4166e+00, + 1DIAGNOSTIC, 10, -9.311589237792e-01, 1.514175215007e-03, 1.0472e+02, 5.3596e+00, + 1DIAGNOSTIC, 11, -9.321230286615e-01, 1.192544196932e-03, 1.1011e+02, 5.3962e+00, + 1DIAGNOSTIC, 12, -9.329788104820e-01, 9.253098199788e-04, 1.1548e+02, 5.3686e+00, + 1DIAGNOSTIC, 13, -9.337691957244e-01, 7.173191992553e-04, 1.2086e+02, 5.3827e+00, + 1DIAGNOSTIC, 14, -9.345066653996e-01, 5.616049131588e-04, 1.2622e+02, 5.3515e+00, + 1DIAGNOSTIC, 15, -9.351797530903e-01, 4.476027826780e-04, 1.3161e+02, 5.3929e+00, + 1DIAGNOSTIC, 16, -9.357887824921e-01, 3.651562605819e-04, 1.3699e+02, 5.3808e+00, + 1DIAGNOSTIC, 17, -9.363292935500e-01, 3.036475528616e-04, 1.4239e+02, 5.3986e+00, + 1DIAGNOSTIC, 18, -9.368085821991e-01, 2.567475453018e-04, 1.4775e+02, 5.3620e+00, + 1DIAGNOSTIC, 19, -9.372408665433e-01, 2.205367111490e-04, 1.5312e+02, 5.3663e+00, + 1DIAGNOSTIC, 20, -9.376292069166e-01, 1.900251184010e-04, 1.5851e+02, 5.3934e+00, + 1DIAGNOSTIC, 21, -9.379816810931e-01, 1.638421889744e-04, 1.6392e+02, 5.4064e+00, + 1DIAGNOSTIC, 22, -9.383063552141e-01, 1.411149004671e-04, 1.6930e+02, 5.3789e+00, + 1DIAGNOSTIC, 23, -9.386042185485e-01, 1.215979011661e-04, 1.7470e+02, 5.4080e+00, + 1DIAGNOSTIC, 24, -9.388832864006e-01, 1.052357420849e-04, 1.8016e+02, 5.4562e+00, + 1DIAGNOSTIC, 25, -9.391405321966e-01, 9.166036317826e-05, 1.8552e+02, 5.3608e+00, + 1DIAGNOSTIC, 26, -9.393824713758e-01, 8.050839352654e-05, 1.9087e+02, 5.3514e+00, + 1DIAGNOSTIC, 27, -9.396088401660e-01, 7.128528105802e-05, 1.9624e+02, 5.3647e+00, + 1DIAGNOSTIC, 28, -9.398182802653e-01, 6.352586107508e-05, 2.0159e+02, 5.3543e+00, + 1DIAGNOSTIC, 29, -9.400166580249e-01, 5.696688270814e-05, 2.0703e+02, 5.4443e+00, + 1DIAGNOSTIC, 30, -9.402072254930e-01, 5.137890372314e-05, 2.1238e+02, 5.3500e+00, + 1DIAGNOSTIC, 31, -9.403881198994e-01, 4.657092525796e-05, 2.1779e+02, 5.4030e+00, + 1DIAGNOSTIC, 32, -9.405578675147e-01, 4.240109829353e-05, 2.2315e+02, 5.3622e+00, + 1DIAGNOSTIC, 33, -9.407227875809e-01, 3.877973186071e-05, 2.2850e+02, 5.3472e+00, + 1DIAGNOSTIC, 34, -9.408717375524e-01, 3.557030329272e-05, 2.3388e+02, 5.3785e+00, + 1DIAGNOSTIC, 35, -9.410143085981e-01, 3.269111054058e-05, 2.3927e+02, 5.3969e+00, + 1DIAGNOSTIC, 36, -9.411436364956e-01, 3.005117299395e-05, 2.4464e+02, 5.3650e+00, + 1DIAGNOSTIC, 37, -9.412677114984e-01, 2.762799301818e-05, 2.5001e+02, 5.3768e+00, + 1DIAGNOSTIC, 38, -9.413867731186e-01, 2.538254939849e-05, 2.5539e+02, 5.3754e+00, + 1DIAGNOSTIC, 39, -9.414950598414e-01, 2.327570605635e-05, 2.6079e+02, 5.3993e+00, + 1DIAGNOSTIC, 40, -9.415993776028e-01, 2.134918255492e-05, 2.6618e+02, 5.3874e+00, + 1DIAGNOSTIC, 41, -9.417004408596e-01, 1.962296196368e-05, 2.7156e+02, 5.3833e+00, + 1DIAGNOSTIC, 42, -9.417985115344e-01, 1.809406346495e-05, 2.7693e+02, 5.3694e+00, + 1DIAGNOSTIC, 43, -9.418913223228e-01, 1.678047480061e-05, 2.8232e+02, 5.3952e+00, + 1DIAGNOSTIC, 44, -9.419854326327e-01, 1.565260070620e-05, 2.8770e+02, 5.3745e+00, + 1DIAGNOSTIC, 45, -9.420736113481e-01, 1.468736049799e-05, 2.9309e+02, 5.3892e+00, + 1DIAGNOSTIC, 46, -9.421602833605e-01, 1.383611805613e-05, 2.9845e+02, 5.3616e+00, + 1DIAGNOSTIC, 47, -9.422454138545e-01, 1.309849849159e-05, 3.0385e+02, 5.4000e+00, + 1DIAGNOSTIC, 48, -9.423299559973e-01, 1.247562914176e-05, 3.0920e+02, 5.3514e+00, + 1DIAGNOSTIC, 49, -9.424081654388e-01, 1.188788580187e-05, 3.1461e+02, 5.4082e+00, + 1DIAGNOSTIC, 50, -9.424843053665e-01, 1.132958599117e-05, 3.1999e+02, 5.3811e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.081250299932e-01, 1.797693134862e+308, 3.6421e+02, 4.4223e+01, + 1DIAGNOSTIC, 2, -9.096154753030e-01, 1.797693134862e+308, 4.0783e+02, 4.3619e+01, + 1DIAGNOSTIC, 3, -9.114098088104e-01, 1.797693134862e+308, 4.5306e+02, 4.5232e+01, + 1DIAGNOSTIC, 4, -9.132360087861e-01, 1.797693134862e+308, 4.9840e+02, 4.5333e+01, + 1DIAGNOSTIC, 5, -9.150523479880e-01, 1.797693134862e+308, 5.4361e+02, 4.5211e+01, + 1DIAGNOSTIC, 6, -9.167524337321e-01, 1.797693134862e+308, 5.8799e+02, 4.4378e+01, + 1DIAGNOSTIC, 7, -9.182373300238e-01, 1.797693134862e+308, 6.3294e+02, 4.4953e+01, + 1DIAGNOSTIC, 8, -9.195178025611e-01, 1.797693134862e+308, 6.7851e+02, 4.5566e+01, + 1DIAGNOSTIC, 9, -9.205570395599e-01, 1.797693134862e+308, 7.2267e+02, 4.4162e+01, + 1DIAGNOSTIC, 10, -9.215288451325e-01, 9.740655494036e-04, 7.6637e+02, 4.3706e+01, + 1DIAGNOSTIC, 11, -9.223102460724e-01, 8.210011776047e-04, 8.1020e+02, 4.3826e+01, + 1DIAGNOSTIC, 12, -9.230206008455e-01, 6.763519764298e-04, 8.5399e+02, 4.3793e+01, + 1DIAGNOSTIC, 13, -9.236535061587e-01, 5.504476409500e-04, 8.9777e+02, 4.3779e+01, + 1DIAGNOSTIC, 14, -9.242140720547e-01, 4.450158114205e-04, 9.4162e+02, 4.3852e+01, + 1DIAGNOSTIC, 15, -9.247469323122e-01, 3.611834740737e-04, 9.8544e+02, 4.3819e+01, + 1DIAGNOSTIC, 16, -9.252481185769e-01, 2.970096775203e-04, 1.0292e+03, 4.3784e+01, + 1DIAGNOSTIC, 17, -9.257407601885e-01, 2.488136847048e-04, 1.0731e+03, 4.3852e+01, + 1DIAGNOSTIC, 18, -9.262308727257e-01, 2.132628842803e-04, 1.1166e+03, 4.3541e+01, + 1DIAGNOSTIC, 19, -9.267252523241e-01, 1.864916372261e-04, 1.1607e+03, 4.4060e+01, + 1DIAGNOSTIC, 20, -9.271702521754e-01, 1.668689354109e-04, 1.2044e+03, 4.3728e+01, + Elapsed time (stage 2): 1205 + + +Total elapsed time: 1252 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:09 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:09 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:12 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:18 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:21 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:21 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23842 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:22 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:24 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:25 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23949 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:25 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:28 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:28 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23997 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:28 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24002 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:28 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:33 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:35 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:35 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:36 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:37 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:39 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:40 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:41 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:41 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:43 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:53 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC002 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:04 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC002 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:05 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC002 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:05 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24604 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:07 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:07 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24652 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:09 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:09 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC002_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 68.817 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/logs/proc_func_18-03-2024-11630.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:15 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC002 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/QC/sub-PNC002_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC002* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 68.850 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC002_ses-02 +========================reprocessing without filter=================== +sub-PNC002_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC002 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC002 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC002 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC002 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:20 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:20 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=8 (INT32) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:21:28 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:23:35 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:23:49 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.19 (mm) at sub-brick 37 +++ Max delta displ in automask = 0.60 (mm) at sub-brick 36 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:36:28 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:36:47 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=8 (INT32) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:38:59 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:41:09 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:43:21 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.973 -3.221 2.470 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.9 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -1.621 -5.163 4.273 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.2 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:48:06 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:48:34 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5557a4c846f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [104.102, 48.3661, -118.053] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5557a4afb730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5557a4c9b320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5557a4c87fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [71.8093, 111.5, -129.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5557a4c8de10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5557a5498230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5557a54965c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [104.102, 48.3661, -118.053] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5557a4c8a3f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5557a5fc2450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5557a5494da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [71.8093, 111.5, -129.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5557a4c91360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5557a67bc780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.465157888712e-01, 1.797693134862e+308, 4.3491e-02, 4.3490e-02, + 2DIAGNOSTIC, 2, -6.481195893796e-01, 1.797693134862e+308, 4.4798e-02, 1.3070e-03, + 2DIAGNOSTIC, 3, -6.495265962070e-01, 1.797693134862e+308, 4.6081e-02, 1.2829e-03, + 2DIAGNOSTIC, 4, -6.525748640768e-01, 1.797693134862e+308, 4.7373e-02, 1.2920e-03, + 2DIAGNOSTIC, 5, -6.586882350333e-01, 1.797693134862e+308, 4.8697e-02, 1.3239e-03, + 2DIAGNOSTIC, 6, -6.619494257583e-01, 1.797693134862e+308, 5.0480e-02, 1.7831e-03, + 2DIAGNOSTIC, 7, -6.634841789529e-01, 1.797693134862e+308, 5.1819e-02, 1.3390e-03, + 2DIAGNOSTIC, 8, -6.651233993607e-01, 1.797693134862e+308, 5.3137e-02, 1.3180e-03, + 2DIAGNOSTIC, 9, -6.707845995874e-01, 1.797693134862e+308, 5.4690e-02, 1.5528e-03, + 2DIAGNOSTIC, 10, -6.804891938464e-01, 3.034092231282e-03, 5.6437e-02, 1.7469e-03, + 2DIAGNOSTIC, 11, -6.872965894045e-01, 3.212651866831e-03, 5.8862e-02, 2.4250e-03, + 2DIAGNOSTIC, 12, -6.905894063403e-01, 3.249122833180e-03, 6.1015e-02, 2.1529e-03, + 2DIAGNOSTIC, 13, -6.907463717977e-01, 3.043066239447e-03, 6.2493e-02, 1.4780e-03, + 2DIAGNOSTIC, 14, -6.942655879005e-01, 2.787284404662e-03, 6.3967e-02, 1.4739e-03, + 2DIAGNOSTIC, 15, -6.966975440791e-01, 2.545569219321e-03, 6.5447e-02, 1.4801e-03, + 2DIAGNOSTIC, 16, -7.094369801121e-01, 2.519223263726e-03, 6.6956e-02, 1.5090e-03, + 2DIAGNOSTIC, 17, -7.276586149533e-01, 2.745598624168e-03, 6.8684e-02, 1.7281e-03, + 2DIAGNOSTIC, 18, -7.307253378295e-01, 2.794600805719e-03, 7.0162e-02, 1.4780e-03, + 2DIAGNOSTIC, 19, -7.320853462466e-01, 2.736854496531e-03, 7.1675e-02, 1.5130e-03, + 2DIAGNOSTIC, 20, -7.353130622145e-01, 2.700751035363e-03, 7.3429e-02, 1.7540e-03, + 2DIAGNOSTIC, 21, -7.411155919324e-01, 2.658140479820e-03, 7.5431e-02, 2.0020e-03, + 2DIAGNOSTIC, 22, -7.428000439268e-01, 2.458103652777e-03, 7.7115e-02, 1.6840e-03, + 2DIAGNOSTIC, 23, -7.421079165031e-01, 2.039713493918e-03, 7.8602e-02, 1.4870e-03, + 2DIAGNOSTIC, 24, -7.442626936518e-01, 1.572698715597e-03, 8.0554e-02, 1.9522e-03, + 2DIAGNOSTIC, 25, -7.448107247980e-01, 1.043535615679e-03, 8.2263e-02, 1.7090e-03, + 2DIAGNOSTIC, 26, -7.448770856527e-01, 6.514477502654e-04, 8.3980e-02, 1.7171e-03, + 2DIAGNOSTIC, 27, -7.450896505405e-01, 5.060269515293e-04, 8.5651e-02, 1.6711e-03, + 2DIAGNOSTIC, 28, -7.451969900482e-01, 3.714424560697e-04, 8.7373e-02, 1.7221e-03, + 2DIAGNOSTIC, 29, -7.453228075728e-01, 2.320938444923e-04, 8.8904e-02, 1.5311e-03, + 2DIAGNOSTIC, 30, -7.455790428309e-01, 1.252974900878e-04, 9.0735e-02, 1.8308e-03, + 2DIAGNOSTIC, 31, -7.459662596847e-01, 9.406789064455e-05, 9.2756e-02, 2.0208e-03, + 2DIAGNOSTIC, 32, -7.464291826999e-01, 8.363518887599e-05, 9.4508e-02, 1.7521e-03, + 2DIAGNOSTIC, 33, -7.455841837229e-01, 4.660993710352e-05, 9.5984e-02, 1.4760e-03, + 2DIAGNOSTIC, 34, -7.456394309522e-01, 3.384526441972e-05, 9.7733e-02, 1.7490e-03, + 2DIAGNOSTIC, 35, -7.468374141520e-01, 3.859295720638e-05, 9.9965e-02, 2.2318e-03, + 2DIAGNOSTIC, 36, -7.474567480557e-01, 4.643886935008e-05, 1.0173e-01, 1.7672e-03, + 2DIAGNOSTIC, 37, -7.485260277786e-01, 6.326970562922e-05, 1.0506e-01, 3.3300e-03, + 2DIAGNOSTIC, 38, -7.488963619805e-01, 7.839791536313e-05, 1.0713e-01, 2.0700e-03, + 2DIAGNOSTIC, 39, -7.489486204934e-01, 8.730342843423e-05, 1.0863e-01, 1.4980e-03, + 2DIAGNOSTIC, 40, -7.489968051244e-01, 9.031715892919e-05, 1.1002e-01, 1.3881e-03, + 2DIAGNOSTIC, 41, -7.495304451325e-01, 9.320998319586e-05, 1.1177e-01, 1.7500e-03, + 2DIAGNOSTIC, 42, -7.500086552226e-01, 9.611245056223e-05, 1.1489e-01, 3.1219e-03, + 2DIAGNOSTIC, 43, -7.504334424481e-01, 8.596039887022e-05, 1.1648e-01, 1.5941e-03, + 2DIAGNOSTIC, 44, -7.504822944012e-01, 6.900529947597e-05, 1.1805e-01, 1.5690e-03, + 2DIAGNOSTIC, 45, -7.506259682223e-01, 5.818459059996e-05, 1.1988e-01, 1.8270e-03, + 2DIAGNOSTIC, 46, -7.498067503775e-01, 4.036552580466e-05, 1.2197e-01, 2.0909e-03, + 2DIAGNOSTIC, 47, -7.504586852487e-01, 3.403399063769e-05, 1.2402e-01, 2.0490e-03, + 2DIAGNOSTIC, 48, -7.501689110201e-01, 2.522348007847e-05, 1.2622e-01, 2.1958e-03, + 2DIAGNOSTIC, 49, -7.501698535764e-01, 1.496746839821e-05, 1.2793e-01, 1.7190e-03, + 2DIAGNOSTIC, 50, -7.501701025433e-01, 4.189035550647e-06, 1.2990e-01, 1.9681e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.712951359594e-01, 1.797693134862e+308, 1.7857e-01, 4.8670e-02, + 2DIAGNOSTIC, 2, -3.711295459286e-01, 1.797693134862e+308, 1.8128e-01, 2.7080e-03, + 2DIAGNOSTIC, 3, -3.725170300095e-01, 1.797693134862e+308, 1.8424e-01, 2.9621e-03, + 2DIAGNOSTIC, 4, -3.750104476948e-01, 1.797693134862e+308, 1.8679e-01, 2.5461e-03, + 2DIAGNOSTIC, 5, -3.806068903136e-01, 1.797693134862e+308, 1.8903e-01, 2.2402e-03, + 2DIAGNOSTIC, 6, -3.859711166617e-01, 1.797693134862e+308, 1.9148e-01, 2.4550e-03, + 2DIAGNOSTIC, 7, -3.961029734354e-01, 1.797693134862e+308, 1.9397e-01, 2.4838e-03, + 2DIAGNOSTIC, 8, -4.035505456233e-01, 1.797693134862e+308, 1.9747e-01, 3.5000e-03, + 2DIAGNOSTIC, 9, -4.127571851874e-01, 1.797693134862e+308, 2.0061e-01, 3.1390e-03, + 2DIAGNOSTIC, 10, -4.149362146639e-01, 8.237695782060e-03, 2.0316e-01, 2.5520e-03, + 2DIAGNOSTIC, 11, -4.160215583006e-01, 7.989954913262e-03, 2.0557e-01, 2.4090e-03, + 2DIAGNOSTIC, 12, -4.189289263429e-01, 7.234835393824e-03, 2.0823e-01, 2.6619e-03, + 2DIAGNOSTIC, 13, -4.203570006873e-01, 6.098921753116e-03, 2.1184e-01, 3.6080e-03, + 2DIAGNOSTIC, 14, -4.211418304193e-01, 4.744838232323e-03, 2.1416e-01, 2.3210e-03, + 2DIAGNOSTIC, 15, -4.251283815295e-01, 3.605819109101e-03, 2.1645e-01, 2.2941e-03, + 2DIAGNOSTIC, 16, -4.280077697937e-01, 2.645538696936e-03, 2.1875e-01, 2.2991e-03, + 2DIAGNOSTIC, 17, -4.303876447715e-01, 2.075948692724e-03, 2.2105e-01, 2.2979e-03, + 2DIAGNOSTIC, 18, -4.406970273590e-01, 2.064884688390e-03, 2.2337e-01, 2.3201e-03, + 2DIAGNOSTIC, 19, -4.500190741849e-01, 2.534022032565e-03, 2.2661e-01, 3.2420e-03, + 2DIAGNOSTIC, 20, -4.556082162435e-01, 2.979740163295e-03, 2.2920e-01, 2.5890e-03, + 2DIAGNOSTIC, 21, -4.649173807273e-01, 3.440339169280e-03, 2.3184e-01, 2.6419e-03, + 2DIAGNOSTIC, 22, -4.905747466708e-01, 4.409288347162e-03, 2.3412e-01, 2.2740e-03, + 2DIAGNOSTIC, 23, -5.085987218603e-01, 5.414026675658e-03, 2.3641e-01, 2.2931e-03, + 2DIAGNOSTIC, 24, -5.530925089415e-01, 7.041898607447e-03, 2.3903e-01, 2.6240e-03, + 2DIAGNOSTIC, 25, -5.956120594631e-01, 9.023659690456e-03, 2.4161e-01, 2.5749e-03, + 2DIAGNOSTIC, 26, -6.072868872018e-01, 1.030297094633e-02, 2.4400e-01, 2.3899e-03, + 2DIAGNOSTIC, 27, -6.154879036498e-01, 1.074568896999e-02, 2.4702e-01, 3.0179e-03, + 2DIAGNOSTIC, 28, -6.214406697929e-01, 1.050580875772e-02, 2.5067e-01, 3.6581e-03, + 2DIAGNOSTIC, 29, -6.220581345944e-01, 9.511025897111e-03, 2.5329e-01, 2.6140e-03, + 2DIAGNOSTIC, 30, -6.243070679806e-01, 7.867628854538e-03, 2.5558e-01, 2.2900e-03, + 2DIAGNOSTIC, 31, -6.248154479380e-01, 5.818468648265e-03, 2.5786e-01, 2.2831e-03, + 2DIAGNOSTIC, 32, -6.252680267012e-01, 3.892771276089e-03, 2.6016e-01, 2.2981e-03, + 2DIAGNOSTIC, 33, -6.274043312456e-01, 2.105113896157e-03, 2.6250e-01, 2.3420e-03, + 2DIAGNOSTIC, 34, -6.324535638478e-01, 1.096735577740e-03, 2.6606e-01, 3.5539e-03, + 2DIAGNOSTIC, 35, -6.335383721924e-01, 7.825727104850e-04, 2.6863e-01, 2.5742e-03, + 2DIAGNOSTIC, 36, -6.335872162575e-01, 6.040761640069e-04, 2.7113e-01, 2.4989e-03, + 2DIAGNOSTIC, 37, -6.393647107059e-01, 5.970745577388e-04, 2.7454e-01, 3.4120e-03, + 2DIAGNOSTIC, 38, -6.400929101100e-01, 6.316069409232e-04, 2.7696e-01, 2.4180e-03, + 2DIAGNOSTIC, 39, -6.404445719363e-01, 6.168384501989e-04, 2.7930e-01, 2.3370e-03, + 2DIAGNOSTIC, 40, -6.408361233930e-01, 5.828997426422e-04, 2.8158e-01, 2.2810e-03, + 2DIAGNOSTIC, 41, -6.420111126910e-01, 5.197656426881e-04, 2.8424e-01, 2.6650e-03, + 2DIAGNOSTIC, 42, -6.423702723837e-01, 4.204808007335e-04, 2.8697e-01, 2.7289e-03, + 2DIAGNOSTIC, 43, -6.431831936195e-01, 3.229204433166e-04, 2.9042e-01, 3.4480e-03, + 2DIAGNOSTIC, 44, -6.438484305688e-01, 2.721446629759e-04, 2.9292e-01, 2.4981e-03, + 2DIAGNOSTIC, 45, -6.450906506415e-01, 2.273293229546e-04, 2.9533e-01, 2.4130e-03, + 2DIAGNOSTIC, 46, -6.459850002483e-01, 1.722568319129e-04, 2.9765e-01, 2.3232e-03, + 2DIAGNOSTIC, 47, -6.466295058976e-01, 1.772321528910e-04, 3.0067e-01, 3.0119e-03, + 2DIAGNOSTIC, 48, -6.467460625517e-01, 1.746937336544e-04, 3.0336e-01, 2.6941e-03, + 2DIAGNOSTIC, 49, -6.468407685063e-01, 1.606643667893e-04, 3.0582e-01, 2.4569e-03, + 2DIAGNOSTIC, 50, -6.498111320492e-01, 1.674887444274e-04, 3.0935e-01, 3.5369e-03, + 2DIAGNOSTIC, 51, -6.504576798249e-01, 1.760298827205e-04, 3.1180e-01, 2.4471e-03, + 2DIAGNOSTIC, 52, -6.520930318202e-01, 1.877649857059e-04, 3.1449e-01, 2.6929e-03, + 2DIAGNOSTIC, 53, -6.529531267371e-01, 1.978356922786e-04, 3.1686e-01, 2.3620e-03, + 2DIAGNOSTIC, 54, -6.560918816239e-01, 2.252769705038e-04, 3.1923e-01, 2.3711e-03, + 2DIAGNOSTIC, 55, -6.592576932248e-01, 2.706751389535e-04, 3.2162e-01, 2.3930e-03, + 2DIAGNOSTIC, 56, -6.615687362588e-01, 3.172459867822e-04, 3.2399e-01, 2.3730e-03, + 2DIAGNOSTIC, 57, -6.697095353071e-01, 4.115845971999e-04, 3.2770e-01, 3.7110e-03, + 2DIAGNOSTIC, 58, -6.738458607475e-01, 4.991118699491e-04, 3.3043e-01, 2.7230e-03, + 2DIAGNOSTIC, 59, -6.739868893416e-01, 5.364432016906e-04, 3.3383e-01, 3.4020e-03, + 2DIAGNOSTIC, 60, -6.739455453044e-01, 5.469314733788e-04, 3.3625e-01, 2.4221e-03, + 2DIAGNOSTIC, 61, -6.740642619086e-01, 5.110551750746e-04, 3.3869e-01, 2.4400e-03, + 2DIAGNOSTIC, 62, -6.741452374924e-01, 4.408862343460e-04, 3.4112e-01, 2.4309e-03, + 2DIAGNOSTIC, 63, -6.744272043027e-01, 3.393983281442e-04, 3.4356e-01, 2.4431e-03, + 2DIAGNOSTIC, 64, -6.742311290176e-01, 2.327945545207e-04, 3.4704e-01, 3.4778e-03, + 2DIAGNOSTIC, 65, -6.750949734667e-01, 1.398831807768e-04, 3.4954e-01, 2.4951e-03, + 2DIAGNOSTIC, 66, -6.751754156407e-01, 5.357932025989e-05, 3.5799e-01, 8.4560e-03, + 2DIAGNOSTIC, 67, -6.751754100428e-01, 2.522220030185e-05, 3.6050e-01, 2.5110e-03, + 2DIAGNOSTIC, 68, -6.751754258983e-01, 2.591713403853e-05, 3.6306e-01, 2.5530e-03, + 2DIAGNOSTIC, 69, -6.751754527043e-01, 2.519855520068e-05, 3.6562e-01, 2.5661e-03, + 2DIAGNOSTIC, 70, -6.751754980672e-01, 2.175547714729e-05, 3.6812e-01, 2.4981e-03, + 2DIAGNOSTIC, 71, -6.751755748803e-01, 1.716736152894e-05, 3.7056e-01, 2.4350e-03, + 2DIAGNOSTIC, 72, -6.751757046841e-01, 1.170736432446e-05, 3.7302e-01, 2.4669e-03, + 2DIAGNOSTIC, 73, -6.751759237925e-01, 7.368736062881e-06, 3.7546e-01, 2.4371e-03, + 2DIAGNOSTIC, 74, -6.751762931293e-01, 1.047705556211e-06, 3.7795e-01, 2.4891e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.989982087368e-01, 1.797693134862e+308, 4.4906e-01, 7.1106e-02, + 2DIAGNOSTIC, 2, -4.994894810252e-01, 1.797693134862e+308, 4.6139e-01, 1.2332e-02, + 2DIAGNOSTIC, 3, -5.002966620122e-01, 1.797693134862e+308, 4.7359e-01, 1.2198e-02, + 2DIAGNOSTIC, 4, -5.015116336582e-01, 1.797693134862e+308, 4.8570e-01, 1.2115e-02, + 2DIAGNOSTIC, 5, -5.019873265535e-01, 1.797693134862e+308, 4.9835e-01, 1.2649e-02, + 2DIAGNOSTIC, 6, -5.020692568903e-01, 1.797693134862e+308, 5.1549e-01, 1.7137e-02, + 2DIAGNOSTIC, 7, -5.020955805088e-01, 1.797693134862e+308, 5.2743e-01, 1.1939e-02, + 2DIAGNOSTIC, 8, -5.023131743361e-01, 1.797693134862e+308, 5.4077e-01, 1.3348e-02, + 2DIAGNOSTIC, 9, -5.023509554959e-01, 1.797693134862e+308, 5.5402e-01, 1.3245e-02, + 2DIAGNOSTIC, 10, -5.024194558442e-01, 4.353247388339e-04, 5.6952e-01, 1.5498e-02, + 2DIAGNOSTIC, 11, -5.024901596535e-01, 2.914761216102e-04, 5.8171e-01, 1.2192e-02, + 2DIAGNOSTIC, 12, -5.025407965603e-01, 1.712291096509e-04, 6.0105e-01, 1.9337e-02, + 2DIAGNOSTIC, 13, -5.025979008688e-01, 9.060630198303e-05, 6.1576e-01, 1.4712e-02, + 2DIAGNOSTIC, 14, -5.026064718555e-01, 6.246657326291e-05, 6.3090e-01, 1.5139e-02, + 2DIAGNOSTIC, 15, -5.025927490084e-01, 5.008188427821e-05, 6.4453e-01, 1.3633e-02, + 2DIAGNOSTIC, 16, -5.026013344754e-01, 3.813476940523e-05, 6.5665e-01, 1.2124e-02, + 2DIAGNOSTIC, 17, -5.025903148664e-01, 2.456903275636e-05, 6.7089e-01, 1.4234e-02, + 2DIAGNOSTIC, 18, -5.025924923376e-01, 1.732717176135e-05, 6.8478e-01, 1.3896e-02, + 2DIAGNOSTIC, 19, -5.026061135259e-01, 1.091955798545e-05, 6.9916e-01, 1.4381e-02, + 2DIAGNOSTIC, 20, -5.026442802014e-01, 7.289895481689e-06, 7.1320e-01, 1.4035e-02, + 2DIAGNOSTIC, 21, -5.027006639365e-01, 6.859527346720e-06, 7.2717e-01, 1.3970e-02, + 2DIAGNOSTIC, 22, -5.027037261138e-01, 7.285867276399e-06, 7.4107e-01, 1.3905e-02, + 2DIAGNOSTIC, 23, -5.026967493101e-01, 8.384701112731e-06, 7.5622e-01, 1.5149e-02, + 2DIAGNOSTIC, 24, -5.027145971687e-01, 9.384521573869e-06, 7.7040e-01, 1.4179e-02, + 2DIAGNOSTIC, 25, -5.027085342019e-01, 9.059068800561e-06, 7.8654e-01, 1.6135e-02, + 2DIAGNOSTIC, 26, -5.027215096597e-01, 8.490027454365e-06, 8.0075e-01, 1.4214e-02, + 2DIAGNOSTIC, 27, -5.027190525352e-01, 7.003389837834e-06, 8.1317e-01, 1.2419e-02, + 2DIAGNOSTIC, 28, -5.027265402161e-01, 5.292461697004e-06, 8.2520e-01, 1.2029e-02, + 2DIAGNOSTIC, 29, -5.027330901917e-01, 3.688209116469e-06, 8.3718e-01, 1.1977e-02, + 2DIAGNOSTIC, 30, -5.027257572061e-01, 2.492954012862e-06, 8.4889e-01, 1.1714e-02, + 2DIAGNOSTIC, 31, -5.027324163330e-01, 2.396458422357e-06, 8.6106e-01, 1.2167e-02, + 2DIAGNOSTIC, 32, -5.027366549100e-01, 2.307273390983e-06, 8.7407e-01, 1.3016e-02, + 2DIAGNOSTIC, 33, -5.027036429837e-01, 1.401781041216e-06, 8.8545e-01, 1.1379e-02, + 2DIAGNOSTIC, 34, -5.027549943573e-01, 1.681069278989e-06, 8.9651e-01, 1.1059e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.151999097817e-01, 1.797693134862e+308, 1.0648e+00, 1.6825e-01, + Elapsed time (stage 0): 1.0933e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -1.024677665806e+00, 1.797693134862e+308, 3.7674e-02, 3.7674e-02, + 2DIAGNOSTIC, 2, -1.026380072060e+00, 1.797693134862e+308, 3.9013e-02, 1.3390e-03, + 2DIAGNOSTIC, 3, -1.028894593588e+00, 1.797693134862e+308, 4.0449e-02, 1.4360e-03, + 2DIAGNOSTIC, 4, -1.030919988574e+00, 1.797693134862e+308, 4.1793e-02, 1.3440e-03, + 2DIAGNOSTIC, 5, -1.032557617405e+00, 1.797693134862e+308, 4.3131e-02, 1.3380e-03, + 2DIAGNOSTIC, 6, -1.034190927995e+00, 1.797693134862e+308, 4.4524e-02, 1.3928e-03, + 2DIAGNOSTIC, 7, -1.035845472294e+00, 1.797693134862e+308, 4.5925e-02, 1.4012e-03, + 2DIAGNOSTIC, 8, -1.035957482434e+00, 1.797693134862e+308, 4.7146e-02, 1.2209e-03, + 2DIAGNOSTIC, 9, -1.036687389015e+00, 1.797693134862e+308, 4.8352e-02, 1.2059e-03, + 2DIAGNOSTIC, 10, -1.039973433295e+00, 8.792079754368e-04, 4.9739e-02, 1.3869e-03, + 2DIAGNOSTIC, 11, -1.043500811862e+00, 8.205301698923e-04, 5.1144e-02, 1.4050e-03, + 2DIAGNOSTIC, 12, -1.051419074691e+00, 9.157479173419e-04, 5.2465e-02, 1.3211e-03, + 2DIAGNOSTIC, 13, -1.061749531657e+00, 1.180594221101e-03, 5.3969e-02, 1.5039e-03, + 2DIAGNOSTIC, 14, -1.084446787503e+00, 1.776973050287e-03, 5.5496e-02, 1.5271e-03, + 2DIAGNOSTIC, 15, -1.097554507790e+00, 2.385959175332e-03, 5.7572e-02, 2.0759e-03, + 2DIAGNOSTIC, 16, -1.102824092056e+00, 2.812277593543e-03, 5.9083e-02, 1.5111e-03, + 2DIAGNOSTIC, 17, -1.104478290382e+00, 2.984390238177e-03, 6.0392e-02, 1.3089e-03, + 2DIAGNOSTIC, 18, -1.109189631791e+00, 2.933474821807e-03, 6.1904e-02, 1.5121e-03, + 2DIAGNOSTIC, 19, -1.121254338539e+00, 2.790595797312e-03, 6.3450e-02, 1.5459e-03, + 2DIAGNOSTIC, 20, -1.122147919426e+00, 2.454612568407e-03, 6.5016e-02, 1.5662e-03, + 2DIAGNOSTIC, 21, -1.125946981457e+00, 2.021386672948e-03, 6.6565e-02, 1.5490e-03, + 2DIAGNOSTIC, 22, -1.129214584678e+00, 1.579539383873e-03, 6.7945e-02, 1.3800e-03, + 2DIAGNOSTIC, 23, -1.138026766537e+00, 1.245002087455e-03, 6.9259e-02, 1.3139e-03, + 2DIAGNOSTIC, 24, -1.149699990780e+00, 1.195198626824e-03, 7.1934e-02, 2.6748e-03, + 2DIAGNOSTIC, 25, -1.151313886164e+00, 1.190030095394e-03, 7.3497e-02, 1.5638e-03, + 2DIAGNOSTIC, 26, -1.152187763331e+00, 1.139640788222e-03, 7.5107e-02, 1.6100e-03, + 2DIAGNOSTIC, 27, -1.152902005602e+00, 1.010318403223e-03, 7.6469e-02, 1.3621e-03, + 2DIAGNOSTIC, 28, -1.152415252403e+00, 8.310757055308e-04, 7.7808e-02, 1.3390e-03, + 2DIAGNOSTIC, 29, -1.153546176523e+00, 7.045189329618e-04, 7.9168e-02, 1.3599e-03, + 2DIAGNOSTIC, 30, -1.154863308575e+00, 5.394938016268e-04, 8.0597e-02, 1.4288e-03, + 2DIAGNOSTIC, 31, -1.156377360046e+00, 3.807132514983e-04, 8.2080e-02, 1.4830e-03, + 2DIAGNOSTIC, 32, -1.155932227884e+00, 2.185646153753e-04, 8.3627e-02, 1.5471e-03, + 2DIAGNOSTIC, 33, -1.154221915475e+00, 1.000795119317e-04, 8.4944e-02, 1.3168e-03, + 2DIAGNOSTIC, 34, -1.154608277232e+00, 7.157769654365e-05, 8.6291e-02, 1.3471e-03, + 2DIAGNOSTIC, 35, -1.157336716468e+00, 6.946658714932e-05, 8.7846e-02, 1.5550e-03, + 2DIAGNOSTIC, 36, -1.158676580341e+00, 7.586039021248e-05, 8.9507e-02, 1.6608e-03, + 2DIAGNOSTIC, 37, -1.157927836661e+00, 7.493629996077e-05, 9.0853e-02, 1.3461e-03, + 2DIAGNOSTIC, 38, -1.157548071240e+00, 6.195785759427e-05, 9.2711e-02, 1.8580e-03, + 2DIAGNOSTIC, 39, -1.158169851566e+00, 5.533186697023e-05, 9.4244e-02, 1.5330e-03, + 2DIAGNOSTIC, 40, -1.157247732520e+00, 4.534983726454e-05, 9.5613e-02, 1.3690e-03, + 2DIAGNOSTIC, 41, -1.156331311544e+00, 3.534988583479e-05, 9.6984e-02, 1.3711e-03, + 2DIAGNOSTIC, 42, -1.157803086126e+00, 2.962526804398e-05, 9.8633e-02, 1.6491e-03, + 2DIAGNOSTIC, 43, -1.157031678807e+00, 6.542694383067e-06, 1.0062e-01, 1.9820e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.240759399764e-01, 1.797693134862e+308, 1.4850e-01, 4.7882e-02, + 2DIAGNOSTIC, 2, -7.244826031993e-01, 1.797693134862e+308, 1.5124e-01, 2.7399e-03, + 2DIAGNOSTIC, 3, -7.267129827282e-01, 1.797693134862e+308, 1.5389e-01, 2.6491e-03, + 2DIAGNOSTIC, 4, -7.301434067990e-01, 1.797693134862e+308, 1.5645e-01, 2.5668e-03, + 2DIAGNOSTIC, 5, -7.339242802982e-01, 1.797693134862e+308, 1.5892e-01, 2.4681e-03, + 2DIAGNOSTIC, 6, -7.381684436118e-01, 1.797693134862e+308, 1.6139e-01, 2.4641e-03, + 2DIAGNOSTIC, 7, -7.456371202242e-01, 1.797693134862e+308, 1.6422e-01, 2.8319e-03, + 2DIAGNOSTIC, 8, -7.516427662331e-01, 1.797693134862e+308, 1.6729e-01, 3.0692e-03, + 2DIAGNOSTIC, 9, -7.665271763121e-01, 1.797693134862e+308, 1.6956e-01, 2.2709e-03, + 2DIAGNOSTIC, 10, -7.722561385417e-01, 4.233498963683e-03, 1.7336e-01, 3.8040e-03, + 2DIAGNOSTIC, 11, -7.743158912539e-01, 4.330407328449e-03, 1.7589e-01, 2.5239e-03, + 2DIAGNOSTIC, 12, -7.764330831058e-01, 4.106951915573e-03, 1.7837e-01, 2.4869e-03, + 2DIAGNOSTIC, 13, -7.775546249843e-01, 3.643795008759e-03, 1.8118e-01, 2.8040e-03, + 2DIAGNOSTIC, 14, -7.801055043283e-01, 3.074614381703e-03, 1.8496e-01, 3.7811e-03, + 2DIAGNOSTIC, 15, -7.805938382094e-01, 2.408495202822e-03, 1.8747e-01, 2.5129e-03, + 2DIAGNOSTIC, 16, -7.826680220492e-01, 1.758272690673e-03, 1.8996e-01, 2.4881e-03, + 2DIAGNOSTIC, 17, -7.856909975958e-01, 1.258148197381e-03, 1.9247e-01, 2.5091e-03, + 2DIAGNOSTIC, 18, -7.888089640383e-01, 8.808115525297e-04, 1.9497e-01, 2.4979e-03, + 2DIAGNOSTIC, 19, -7.919617528176e-01, 8.146102759490e-04, 1.9784e-01, 2.8782e-03, + 2DIAGNOSTIC, 20, -7.938474849530e-01, 8.209515751518e-04, 2.0101e-01, 3.1691e-03, + 2DIAGNOSTIC, 21, -7.953466248336e-01, 8.131407427019e-04, 2.0366e-01, 2.6481e-03, + 2DIAGNOSTIC, 22, -7.960989257509e-01, 7.782857894720e-04, 2.0639e-01, 2.7270e-03, + 2DIAGNOSTIC, 23, -7.977894146443e-01, 7.179599563300e-04, 2.0936e-01, 2.9769e-03, + 2DIAGNOSTIC, 24, -7.982414343099e-01, 6.416789653240e-04, 2.1406e-01, 4.6971e-03, + 2DIAGNOSTIC, 25, -7.981691239714e-01, 5.178224541232e-04, 2.1761e-01, 3.5460e-03, + 2DIAGNOSTIC, 26, -7.981523853287e-01, 3.845544962138e-04, 2.2021e-01, 2.5980e-03, + 2DIAGNOSTIC, 27, -7.982376716160e-01, 2.673365470376e-04, 2.2283e-01, 2.6262e-03, + 2DIAGNOSTIC, 28, -7.983539886517e-01, 1.751543556712e-04, 2.2552e-01, 2.6920e-03, + 2DIAGNOSTIC, 29, -7.984302280275e-01, 1.135417323578e-04, 2.2824e-01, 2.7158e-03, + 2DIAGNOSTIC, 30, -7.983930817186e-01, 6.809699575850e-05, 2.3099e-01, 2.7459e-03, + 2DIAGNOSTIC, 31, -7.984655626019e-01, 3.805354156061e-05, 2.3354e-01, 2.5589e-03, + 2DIAGNOSTIC, 32, -7.984912389568e-01, 1.480766094092e-05, 2.3638e-01, 2.8369e-03, + 2DIAGNOSTIC, 33, -7.985480273583e-01, 1.089875706541e-05, 2.3919e-01, 2.8119e-03, + 2DIAGNOSTIC, 34, -7.985539530957e-01, 1.122991881764e-05, 2.4268e-01, 3.4819e-03, + 2DIAGNOSTIC, 35, -7.986250479521e-01, 1.059996593333e-05, 2.4587e-01, 3.1989e-03, + 2DIAGNOSTIC, 36, -7.986639023756e-01, 9.291241146292e-06, 2.4841e-01, 2.5320e-03, + 2DIAGNOSTIC, 37, -7.986688329448e-01, 8.107131495783e-06, 2.5091e-01, 2.5029e-03, + 2DIAGNOSTIC, 38, -7.986782147870e-01, 7.495642435552e-06, 2.5341e-01, 2.4991e-03, + 2DIAGNOSTIC, 39, -7.989110615433e-01, 9.193158420549e-06, 2.5623e-01, 2.8231e-03, + 2DIAGNOSTIC, 40, -7.994648400766e-01, 1.463247094267e-05, 2.5972e-01, 3.4881e-03, + 2DIAGNOSTIC, 41, -7.995081071783e-01, 1.938759685457e-05, 2.6255e-01, 2.8269e-03, + 2DIAGNOSTIC, 42, -7.995418825108e-01, 2.272574795303e-05, 2.6603e-01, 3.4800e-03, + 2DIAGNOSTIC, 43, -7.995331447512e-01, 2.429021458764e-05, 2.6853e-01, 2.5020e-03, + 2DIAGNOSTIC, 44, -7.995637126708e-01, 2.378391374700e-05, 2.7135e-01, 2.8231e-03, + 2DIAGNOSTIC, 45, -7.995937852029e-01, 2.181979734404e-05, 2.7388e-01, 2.5260e-03, + 2DIAGNOSTIC, 46, -7.996494008079e-01, 1.867225923937e-05, 2.7685e-01, 2.9771e-03, + 2DIAGNOSTIC, 47, -7.998002661186e-01, 1.522353327546e-05, 2.8072e-01, 3.8650e-03, + 2DIAGNOSTIC, 48, -7.998329816281e-01, 1.082913987618e-05, 2.8374e-01, 3.0179e-03, + 2DIAGNOSTIC, 49, -7.998274421000e-01, 7.226680085910e-06, 2.8681e-01, 3.0689e-03, + 2DIAGNOSTIC, 50, -8.000562680180e-01, 8.823968785970e-06, 2.9053e-01, 3.7200e-03, + 2DIAGNOSTIC, 51, -8.000900723339e-01, 1.006246280659e-05, 2.9312e-01, 2.5961e-03, + 2DIAGNOSTIC, 52, -8.001125089754e-01, 1.073944323302e-05, 2.9610e-01, 2.9759e-03, + 2DIAGNOSTIC, 53, -8.000905828500e-01, 1.022954692512e-05, 2.9874e-01, 2.6419e-03, + 2DIAGNOSTIC, 54, -8.001004924886e-01, 9.106075134390e-06, 3.0205e-01, 3.3090e-03, + 2DIAGNOSTIC, 55, -8.001326845969e-01, 7.594867547044e-06, 3.0465e-01, 2.6050e-03, + 2DIAGNOSTIC, 56, -8.001358863568e-01, 5.802405005945e-06, 3.0725e-01, 2.6002e-03, + 2DIAGNOSTIC, 57, -8.001415368419e-01, 4.582376379871e-06, 3.0983e-01, 2.5721e-03, + 2DIAGNOSTIC, 58, -8.001126431186e-01, 3.068876135926e-06, 3.1238e-01, 2.5549e-03, + 2DIAGNOSTIC, 59, -8.001640391287e-01, 1.616102076080e-06, 3.1500e-01, 2.6219e-03, + 2DIAGNOSTIC, 60, -8.002086352832e-01, 1.735693068942e-06, 3.1859e-01, 3.5858e-03, + 2DIAGNOSTIC, 61, -8.002889630476e-01, 2.399598393588e-06, 3.2221e-01, 3.6170e-03, + 2DIAGNOSTIC, 62, -8.002222758602e-01, 2.606281695156e-06, 3.2474e-01, 2.5301e-03, + 2DIAGNOSTIC, 63, -8.002225594611e-01, 2.504762110712e-06, 3.2722e-01, 2.4879e-03, + 2DIAGNOSTIC, 64, -8.002276903270e-01, 2.292661535969e-06, 3.2967e-01, 2.4450e-03, + 2DIAGNOSTIC, 65, -8.002378883619e-01, 2.133819744950e-06, 3.3430e-01, 4.6310e-03, + 2DIAGNOSTIC, 66, -8.002379017865e-01, 1.833416549777e-06, 3.3700e-01, 2.6982e-03, + 2DIAGNOSTIC, 67, -8.002379578103e-01, 1.460598792604e-06, 3.3970e-01, 2.7061e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.930183398066e-01, 1.797693134862e+308, 4.0932e-01, 6.9620e-02, + 2DIAGNOSTIC, 2, -5.933220000696e-01, 1.797693134862e+308, 4.2150e-01, 1.2172e-02, + 2DIAGNOSTIC, 3, -5.937082573443e-01, 1.797693134862e+308, 4.3555e-01, 1.4053e-02, + 2DIAGNOSTIC, 4, -5.941215302511e-01, 1.797693134862e+308, 4.4736e-01, 1.1814e-02, + 2DIAGNOSTIC, 5, -5.945117224013e-01, 1.797693134862e+308, 4.6005e-01, 1.2683e-02, + 2DIAGNOSTIC, 6, -5.947828748091e-01, 1.797693134862e+308, 4.7533e-01, 1.5283e-02, + 2DIAGNOSTIC, 7, -5.949350931713e-01, 1.797693134862e+308, 4.8690e-01, 1.1571e-02, + 2DIAGNOSTIC, 8, -5.951105906570e-01, 1.797693134862e+308, 4.9938e-01, 1.2477e-02, + 2DIAGNOSTIC, 9, -5.952727085989e-01, 1.797693134862e+308, 5.1265e-01, 1.3273e-02, + 2DIAGNOSTIC, 10, -5.953623201735e-01, 2.641156173475e-04, 5.2803e-01, 1.5377e-02, + 2DIAGNOSTIC, 11, -5.953701051478e-01, 2.030759057025e-04, 5.4153e-01, 1.3500e-02, + 2DIAGNOSTIC, 12, -5.954013483130e-01, 1.475970633069e-04, 5.5334e-01, 1.1812e-02, + 2DIAGNOSTIC, 13, -5.956938862002e-01, 1.123021841786e-04, 5.6800e-01, 1.4656e-02, + 2DIAGNOSTIC, 14, -5.959518977475e-01, 9.441008994709e-05, 5.8692e-01, 1.8924e-02, + 2DIAGNOSTIC, 15, -5.959753115274e-01, 8.339916975623e-05, 5.9856e-01, 1.1643e-02, + 2DIAGNOSTIC, 16, -5.961148486984e-01, 7.878569336733e-05, 6.1030e-01, 1.1738e-02, + 2DIAGNOSTIC, 17, -5.962802524921e-01, 7.649228994690e-05, 6.2216e-01, 1.1855e-02, + 2DIAGNOSTIC, 18, -5.964132579284e-01, 7.542457516504e-05, 6.3385e-01, 1.1698e-02, + 2DIAGNOSTIC, 19, -5.964853965268e-01, 7.335527420665e-05, 6.4541e-01, 1.1559e-02, + 2DIAGNOSTIC, 20, -5.965669814784e-01, 6.904596583367e-05, 6.5714e-01, 1.1729e-02, + 2DIAGNOSTIC, 21, -5.967171678078e-01, 6.255738888980e-05, 6.7156e-01, 1.4413e-02, + 2DIAGNOSTIC, 22, -5.970865205519e-01, 5.941658497705e-05, 6.8753e-01, 1.5978e-02, + 2DIAGNOSTIC, 23, -5.970995118116e-01, 5.714755095575e-05, 7.0093e-01, 1.3402e-02, + 2DIAGNOSTIC, 24, -5.971035243189e-01, 5.521538317349e-05, 7.1348e-01, 1.2546e-02, + 2DIAGNOSTIC, 25, -5.971053147810e-01, 4.893627557527e-05, 7.2804e-01, 1.4563e-02, + 2DIAGNOSTIC, 26, -5.971094897752e-01, 4.118671240830e-05, 7.4010e-01, 1.2051e-02, + 2DIAGNOSTIC, 27, -5.971105719063e-01, 3.304085861384e-05, 7.5216e-01, 1.2063e-02, + 2DIAGNOSTIC, 28, -5.971230532622e-01, 2.494856979160e-05, 7.6404e-01, 1.1877e-02, + 2DIAGNOSTIC, 29, -5.971339478867e-01, 1.661678825472e-05, 7.7889e-01, 1.4855e-02, + 2DIAGNOSTIC, 30, -5.971491783738e-01, 8.916298631013e-06, 7.9067e-01, 1.1778e-02, + 2DIAGNOSTIC, 31, -5.971659917232e-01, 3.377334749678e-06, 8.0575e-01, 1.5079e-02, + 2DIAGNOSTIC, 32, -5.971816954219e-01, 3.694166341522e-06, 8.2627e-01, 2.0522e-02, + 2DIAGNOSTIC, 33, -5.971838275015e-01, 3.950376176010e-06, 8.3875e-01, 1.2476e-02, + 2DIAGNOSTIC, 34, -5.971890173908e-01, 4.039059200926e-06, 8.5247e-01, 1.3720e-02, + 2DIAGNOSTIC, 35, -5.971959860634e-01, 3.945508239515e-06, 8.6678e-01, 1.4312e-02, + 2DIAGNOSTIC, 36, -5.971987630226e-01, 3.657930260373e-06, 8.8254e-01, 1.5764e-02, + 2DIAGNOSTIC, 37, -5.971993671241e-01, 3.140889767231e-06, 8.9744e-01, 1.4903e-02, + 2DIAGNOSTIC, 38, -5.971985286226e-01, 2.582105022037e-06, 9.1096e-01, 1.3512e-02, + 2DIAGNOSTIC, 39, -5.971986277419e-01, 2.019972494025e-06, 9.2289e-01, 1.1936e-02, + 2DIAGNOSTIC, 40, -5.971976931896e-01, 1.536789387697e-06, 9.3642e-01, 1.3527e-02, + 2DIAGNOSTIC, 41, -5.971987360044e-01, 1.209531365242e-06, 9.4972e-01, 1.3305e-02, + 2DIAGNOSTIC, 42, -5.971992701775e-01, 1.041550957977e-06, 9.6303e-01, 1.3308e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.913025644627e-01, 1.797693134862e+308, 1.1500e+00, 1.8692e-01, + Elapsed time (stage 1): 1.1724e+00 + + +Total elapsed time: 2.2668e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:48:38 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 36 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 100 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 85.20% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 85.20% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[16193 8347 4557 31492 478 703 1567 179 1034 453 234 360 + 0 925 461 1048 1733 453 0 503 0 761 0 0 + 314 0 0 0 0 0 0 0 0 0 0 0] +[114406 92651 32848 17643 30966 28849 12814 16789 12543 2662 + 10426 12158 1780 3064 5317 5928 1100 1189 946 971 + 464 871 1079 635 298 546 927 0 566 400 + 182 335 399 411 203 218] +[ 0 0 0 227 0 629 493 0 11919 857 0 10146 + 0 12564 9645 0 0 6870 0 0 211 407 0 0 + 0 0 880 11512 0 5542 0 10812 735 0 286 0] +[ 1074 413 6613 9475 0 178 10491 2968 839 24590 + 1991 133933 9053 709 0 1046 272 12291 1424 1977 + 1469 10966 591 1053 228 222 5102 1596 948 188 + 676 81459 11692 1366 3628 776] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:56:52 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:56:57 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:41 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:41 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:42 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:52 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:55 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC002 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:01:08 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:01:32 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:03:18 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:03:19 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:04:38 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:04:38 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55bc60078d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [72.2585, 111.949, -129.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55bc5feef730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4ce1e6a010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55bc6007c020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.551, 48.8152, -118.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55bc600820c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4cde7ab010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55bc60092840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [72.2585, 111.949, -129.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55bc6007e890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4cd9ad7010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55bc600963e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.551, 48.8152, -118.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55bc60085130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4cd6418010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.052004243822e-01, 1.797693134862e+308, 2.2355e-01, 2.2355e-01, + 2DIAGNOSTIC, 2, -4.063434350889e-01, 1.797693134862e+308, 2.2488e-01, 1.3239e-03, + 2DIAGNOSTIC, 3, -4.086886659250e-01, 1.797693134862e+308, 2.2617e-01, 1.2898e-03, + 2DIAGNOSTIC, 4, -4.147863631841e-01, 1.797693134862e+308, 2.2752e-01, 1.3540e-03, + 2DIAGNOSTIC, 5, -4.289861301293e-01, 1.797693134862e+308, 2.2893e-01, 1.4050e-03, + 2DIAGNOSTIC, 6, -4.382432297037e-01, 1.797693134862e+308, 2.3026e-01, 1.3311e-03, + 2DIAGNOSTIC, 7, -4.621118762163e-01, 1.797693134862e+308, 2.3167e-01, 1.4119e-03, + 2DIAGNOSTIC, 8, -4.881633021563e-01, 1.797693134862e+308, 2.3359e-01, 1.9240e-03, + 2DIAGNOSTIC, 9, -5.505928636720e-01, 1.797693134862e+308, 2.3596e-01, 2.3668e-03, + 2DIAGNOSTIC, 10, -5.521214333502e-01, 2.198737911398e-02, 2.3769e-01, 1.7269e-03, + 2DIAGNOSTIC, 11, -5.523854541659e-01, 2.216465810153e-02, 2.3987e-01, 2.1789e-03, + 2DIAGNOSTIC, 12, -5.524886095023e-01, 2.045007576926e-02, 2.4144e-01, 1.5769e-03, + 2DIAGNOSTIC, 13, -5.525154231361e-01, 1.729965020743e-02, 2.4334e-01, 1.8919e-03, + 2DIAGNOSTIC, 14, -5.525315606044e-01, 1.332247314887e-02, 2.4487e-01, 1.5340e-03, + 2DIAGNOSTIC, 15, -5.525578747688e-01, 9.301151680716e-03, 2.4679e-01, 1.9159e-03, + 2DIAGNOSTIC, 16, -5.525646337483e-01, 5.356328240117e-03, 2.4824e-01, 1.4570e-03, + 2DIAGNOSTIC, 17, -5.525730977656e-01, 2.246362111420e-03, 2.5008e-01, 1.8358e-03, + 2DIAGNOSTIC, 18, -5.525819335080e-01, 8.252863753229e-05, 2.5189e-01, 1.8141e-03, + 2DIAGNOSTIC, 19, -5.525881460798e-01, 2.347041070129e-05, 2.5374e-01, 1.8439e-03, + 2DIAGNOSTIC, 20, -5.526107073887e-01, 1.244064123107e-05, 2.5527e-01, 1.5309e-03, + 2DIAGNOSTIC, 21, -5.526200922548e-01, 8.791725762375e-06, 2.5730e-01, 2.0339e-03, + 2DIAGNOSTIC, 22, -5.526313044251e-01, 7.739259642800e-06, 2.5951e-01, 2.2051e-03, + 2DIAGNOSTIC, 23, -5.526358308407e-01, 6.967861811751e-06, 2.6102e-01, 1.5161e-03, + 2DIAGNOSTIC, 24, -5.526370298352e-01, 6.141817163720e-06, 2.6254e-01, 1.5149e-03, + 2DIAGNOSTIC, 25, -5.526408743967e-01, 5.609107649809e-06, 2.6401e-01, 1.4760e-03, + 2DIAGNOSTIC, 26, -5.526540247523e-01, 5.137796195737e-06, 2.6553e-01, 1.5199e-03, + 2DIAGNOSTIC, 27, -5.530499964706e-01, 1.257668044594e-05, 2.6769e-01, 2.1532e-03, + 2DIAGNOSTIC, 28, -5.530598444375e-01, 1.853451585565e-05, 2.6943e-01, 1.7488e-03, + 2DIAGNOSTIC, 29, -5.534448946431e-01, 2.988863035969e-05, 2.7137e-01, 1.9388e-03, + 2DIAGNOSTIC, 30, -5.538333903748e-01, 4.512681883147e-05, 2.7306e-01, 1.6880e-03, + 2DIAGNOSTIC, 31, -5.538612185602e-01, 5.567294757867e-05, 2.7454e-01, 1.4760e-03, + 2DIAGNOSTIC, 32, -5.538734546076e-01, 6.081348486318e-05, 2.7648e-01, 1.9438e-03, + 2DIAGNOSTIC, 33, -5.538762710171e-01, 6.014374577863e-05, 2.7795e-01, 1.4710e-03, + 2DIAGNOSTIC, 34, -5.538861690421e-01, 5.407360658563e-05, 2.7951e-01, 1.5550e-03, + 2DIAGNOSTIC, 35, -5.538993882509e-01, 4.354150031360e-05, 2.8127e-01, 1.7619e-03, + 2DIAGNOSTIC, 36, -5.539237841555e-01, 3.003852439783e-05, 2.8295e-01, 1.6801e-03, + 2DIAGNOSTIC, 37, -5.546650275401e-01, 3.126688147212e-05, 2.8481e-01, 1.8630e-03, + 2DIAGNOSTIC, 38, -5.542545737459e-01, 2.348058609455e-05, 2.8674e-01, 1.9279e-03, + 2DIAGNOSTIC, 39, -5.543090191503e-01, 2.016781708934e-05, 2.9230e-01, 5.5580e-03, + 2DIAGNOSTIC, 40, -5.543090190131e-01, 2.047172432826e-05, 2.9377e-01, 1.4739e-03, + 2DIAGNOSTIC, 41, -5.543090525603e-01, 1.912943067149e-05, 2.9522e-01, 1.4451e-03, + 2DIAGNOSTIC, 42, -5.543091092847e-01, 1.613741443666e-05, 2.9676e-01, 1.5390e-03, + 2DIAGNOSTIC, 43, -5.543092051955e-01, 1.191488160767e-05, 2.9832e-01, 1.5678e-03, + 2DIAGNOSTIC, 44, -5.543093673522e-01, 7.104629676694e-06, 2.9987e-01, 1.5502e-03, + 2DIAGNOSTIC, 45, -5.543096414801e-01, 2.086738600571e-06, 3.0135e-01, 1.4791e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.053889281804e-01, 1.797693134862e+308, 5.3040e-01, 2.2905e-01, + 2DIAGNOSTIC, 2, -4.048629841574e-01, 1.797693134862e+308, 5.3270e-01, 2.2950e-03, + 2DIAGNOSTIC, 3, -4.052003666002e-01, 1.797693134862e+308, 5.3521e-01, 2.5139e-03, + 2DIAGNOSTIC, 4, -4.051603623364e-01, 1.797693134862e+308, 5.3729e-01, 2.0802e-03, + 2DIAGNOSTIC, 5, -4.051946152285e-01, 1.797693134862e+308, 5.3943e-01, 2.1348e-03, + 2DIAGNOSTIC, 6, -4.055658547798e-01, 1.797693134862e+308, 5.4182e-01, 2.3909e-03, + 2DIAGNOSTIC, 7, -4.058383416879e-01, 1.797693134862e+308, 5.4398e-01, 2.1641e-03, + 2DIAGNOSTIC, 8, -4.058790596997e-01, 1.797693134862e+308, 5.4615e-01, 2.1651e-03, + 2DIAGNOSTIC, 9, -4.062803847031e-01, 1.797693134862e+308, 5.4846e-01, 2.3160e-03, + 2DIAGNOSTIC, 10, -4.083436440553e-01, 3.566929073993e-04, 5.5172e-01, 3.2530e-03, + 2DIAGNOSTIC, 11, -4.088663718638e-01, 5.055779706320e-04, 5.5684e-01, 5.1181e-03, + 2DIAGNOSTIC, 12, -4.090538123293e-01, 5.647312968024e-04, 5.5953e-01, 2.6948e-03, + 2DIAGNOSTIC, 13, -4.091997439243e-01, 5.920751386906e-04, 5.6261e-01, 3.0751e-03, + 2DIAGNOSTIC, 14, -4.093467795594e-01, 5.672800311332e-04, 5.6527e-01, 2.6610e-03, + 2DIAGNOSTIC, 15, -4.097947713046e-01, 5.146035052697e-04, 5.6855e-01, 3.2811e-03, + 2DIAGNOSTIC, 16, -4.101233132538e-01, 4.509250350023e-04, 5.7161e-01, 3.0611e-03, + 2DIAGNOSTIC, 17, -4.097322416643e-01, 3.498655053521e-04, 5.7531e-01, 3.7060e-03, + 2DIAGNOSTIC, 18, -4.097439163979e-01, 2.315664277697e-04, 5.7765e-01, 2.3370e-03, + 2DIAGNOSTIC, 19, -4.096845311719e-01, 1.150610743896e-04, 5.7992e-01, 2.2650e-03, + 2DIAGNOSTIC, 20, -4.096910695664e-01, 7.103973869902e-05, 5.8224e-01, 2.3191e-03, + 2DIAGNOSTIC, 21, -4.096997664024e-01, 4.214750117688e-05, 5.8453e-01, 2.2969e-03, + 2DIAGNOSTIC, 22, -4.097132867411e-01, 1.875452368216e-05, 5.8681e-01, 2.2740e-03, + 2DIAGNOSTIC, 23, -4.098096053564e-01, 3.362779718262e-06, 5.8907e-01, 2.2631e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.006865781866e-01, 1.797693134862e+308, 8.5029e-01, 2.6122e-01, + 2DIAGNOSTIC, 2, -3.015701530366e-01, 1.797693134862e+308, 8.6341e-01, 1.3114e-02, + 2DIAGNOSTIC, 3, -3.026768937353e-01, 1.797693134862e+308, 8.7675e-01, 1.3343e-02, + 2DIAGNOSTIC, 4, -3.042505671578e-01, 1.797693134862e+308, 8.9087e-01, 1.4118e-02, + 2DIAGNOSTIC, 5, -3.061398852509e-01, 1.797693134862e+308, 9.0494e-01, 1.4072e-02, + 2DIAGNOSTIC, 6, -3.087379188823e-01, 1.797693134862e+308, 9.1913e-01, 1.4188e-02, + 2DIAGNOSTIC, 7, -3.100987279853e-01, 1.797693134862e+308, 9.3369e-01, 1.4556e-02, + 2DIAGNOSTIC, 8, -3.141623865815e-01, 1.797693134862e+308, 9.4671e-01, 1.3027e-02, + 2DIAGNOSTIC, 9, -3.253163339697e-01, 1.797693134862e+308, 9.6544e-01, 1.8730e-02, + 2DIAGNOSTIC, 10, -3.305098683847e-01, 5.660616794226e-03, 9.8414e-01, 1.8695e-02, + 2DIAGNOSTIC, 11, -3.308869572550e-01, 5.992598305749e-03, 9.9973e-01, 1.5590e-02, + 2DIAGNOSTIC, 12, -3.313727366696e-01, 5.849798927296e-03, 1.0161e+00, 1.6352e-02, + 2DIAGNOSTIC, 13, -3.315104922504e-01, 5.289142267413e-03, 1.0306e+00, 1.4507e-02, + 2DIAGNOSTIC, 14, -3.320237227521e-01, 4.453558064018e-03, 1.0446e+00, 1.4048e-02, + 2DIAGNOSTIC, 15, -3.352148254139e-01, 3.622608245977e-03, 1.0586e+00, 1.4004e-02, + 2DIAGNOSTIC, 16, -3.366819140088e-01, 2.800277422845e-03, 1.0752e+00, 1.6532e-02, + 2DIAGNOSTIC, 17, -3.381598515797e-01, 1.975898935454e-03, 1.1101e+00, 3.4968e-02, + 2DIAGNOSTIC, 18, -3.382212477509e-01, 1.257813984378e-03, 1.1249e+00, 1.4740e-02, + 2DIAGNOSTIC, 19, -3.382971421460e-01, 1.019416552317e-03, 1.1374e+00, 1.2547e-02, + 2DIAGNOSTIC, 20, -3.383462328298e-01, 9.406924665150e-04, 1.1502e+00, 1.2755e-02, + 2DIAGNOSTIC, 21, -3.385036349577e-01, 8.029649631565e-04, 1.1628e+00, 1.2654e-02, + 2DIAGNOSTIC, 22, -3.386488318312e-01, 6.296112279275e-04, 1.1776e+00, 1.4789e-02, + 2DIAGNOSTIC, 23, -3.388280315616e-01, 4.268657271278e-04, 1.1904e+00, 1.2821e-02, + 2DIAGNOSTIC, 24, -3.389472038665e-01, 2.230152773996e-04, 1.2033e+00, 1.2899e-02, + 2DIAGNOSTIC, 25, -3.391701130897e-01, 1.335834010483e-04, 1.2164e+00, 1.3051e-02, + 2DIAGNOSTIC, 26, -3.396743232492e-01, 1.033431358248e-04, 1.2295e+00, 1.3111e-02, + 2DIAGNOSTIC, 27, -3.403352684037e-01, 1.342398350574e-04, 1.2421e+00, 1.2577e-02, + 2DIAGNOSTIC, 28, -3.413768994176e-01, 1.841028220802e-04, 1.2588e+00, 1.6729e-02, + 2DIAGNOSTIC, 29, -3.417310129024e-01, 2.255495418714e-04, 1.2738e+00, 1.4967e-02, + 2DIAGNOSTIC, 30, -3.416872100322e-01, 2.432947102514e-04, 1.2866e+00, 1.2831e-02, + 2DIAGNOSTIC, 31, -3.417243525123e-01, 2.426721027693e-04, 1.2994e+00, 1.2746e-02, + 2DIAGNOSTIC, 32, -3.418551908220e-01, 2.263191527138e-04, 1.3123e+00, 1.2950e-02, + 2DIAGNOSTIC, 33, -3.420708915497e-01, 1.994944642950e-04, 1.3260e+00, 1.3668e-02, + 2DIAGNOSTIC, 34, -3.425352290415e-01, 1.701703003177e-04, 1.3397e+00, 1.3725e-02, + 2DIAGNOSTIC, 35, -3.459010698385e-01, 2.146846300222e-04, 1.3628e+00, 2.3058e-02, + 2DIAGNOSTIC, 36, -3.460142112540e-01, 2.489225994064e-04, 1.3779e+00, 1.5185e-02, + 2DIAGNOSTIC, 37, -3.460294898567e-01, 2.736869988329e-04, 1.3925e+00, 1.4579e-02, + 2DIAGNOSTIC, 38, -3.460929034844e-01, 2.969516852071e-04, 1.4054e+00, 1.2877e-02, + 2DIAGNOSTIC, 39, -3.462099084275e-01, 3.007419275282e-04, 1.4184e+00, 1.2980e-02, + 2DIAGNOSTIC, 40, -3.471008213554e-01, 2.926250923373e-04, 1.4333e+00, 1.4875e-02, + 2DIAGNOSTIC, 41, -3.528925536381e-01, 3.776856474126e-04, 1.4486e+00, 1.5324e-02, + 2DIAGNOSTIC, 42, -3.782387082370e-01, 9.358020089531e-04, 1.4794e+00, 3.0841e-02, + 2DIAGNOSTIC, 43, -3.786993958755e-01, 1.376767816604e-03, 1.4922e+00, 1.2734e-02, + 2DIAGNOSTIC, 44, -3.800200601223e-01, 1.703655544442e-03, 1.5048e+00, 1.2685e-02, + 2DIAGNOSTIC, 45, -3.823730284762e-01, 1.965014145917e-03, 1.5174e+00, 1.2601e-02, + 2DIAGNOSTIC, 46, -3.854453095873e-01, 2.079556039267e-03, 1.5314e+00, 1.4008e-02, + 2DIAGNOSTIC, 47, -3.907198927609e-01, 2.075288379060e-03, 1.5443e+00, 1.2873e-02, + 2DIAGNOSTIC, 48, -3.959672595773e-01, 1.963484702670e-03, 1.5572e+00, 1.2926e-02, + 2DIAGNOSTIC, 49, -4.078251843745e-01, 1.878096294712e-03, 1.5702e+00, 1.2915e-02, + 2DIAGNOSTIC, 50, -4.147798492092e-01, 1.745091486423e-03, 1.5830e+00, 1.2820e-02, + 2DIAGNOSTIC, 51, -4.287435488954e-01, 1.757581181841e-03, 1.6001e+00, 1.7072e-02, + 2DIAGNOSTIC, 52, -4.299424223338e-01, 2.016987776089e-03, 1.6130e+00, 1.2915e-02, + 2DIAGNOSTIC, 53, -4.339416693200e-01, 2.141977090540e-03, 1.6259e+00, 1.2904e-02, + 2DIAGNOSTIC, 54, -4.667002692469e-01, 2.563845114587e-03, 1.6409e+00, 1.5059e-02, + 2DIAGNOSTIC, 55, -4.850748985754e-01, 3.006665975474e-03, 1.6561e+00, 1.5162e-02, + 2DIAGNOSTIC, 56, -5.008698818728e-01, 3.404610097345e-03, 1.6710e+00, 1.4870e-02, + 2DIAGNOSTIC, 57, -5.330192939423e-01, 3.977512084437e-03, 1.6860e+00, 1.5012e-02, + 2DIAGNOSTIC, 58, -5.641326057048e-01, 4.619102083502e-03, 1.7005e+00, 1.4534e-02, + 2DIAGNOSTIC, 59, -5.788382079202e-01, 5.121901477308e-03, 1.7182e+00, 1.7659e-02, + 2DIAGNOSTIC, 60, -5.884968351568e-01, 5.316992747524e-03, 1.7331e+00, 1.4888e-02, + 2DIAGNOSTIC, 61, -6.068793299555e-01, 5.401138930796e-03, 1.7476e+00, 1.4506e-02, + 2DIAGNOSTIC, 62, -6.154466422210e-01, 5.079447580248e-03, 1.7633e+00, 1.5694e-02, + 2DIAGNOSTIC, 63, -6.195241796409e-01, 4.372895273678e-03, 1.7803e+00, 1.7027e-02, + 2DIAGNOSTIC, 64, -6.236443496005e-01, 3.710612818702e-03, 1.7948e+00, 1.4521e-02, + 2DIAGNOSTIC, 65, -6.262301619908e-01, 2.965126157773e-03, 1.8093e+00, 1.4459e-02, + 2DIAGNOSTIC, 66, -6.275582347726e-01, 2.153519808729e-03, 1.8236e+00, 1.4328e-02, + 2DIAGNOSTIC, 67, -6.280809157856e-01, 1.517023277293e-03, 1.8381e+00, 1.4529e-02, + 2DIAGNOSTIC, 68, -6.281406855189e-01, 1.090570790587e-03, 1.8509e+00, 1.2732e-02, + 2DIAGNOSTIC, 69, -6.281486772959e-01, 7.299088655874e-04, 1.8654e+00, 1.4517e-02, + 2DIAGNOSTIC, 70, -6.281916371411e-01, 4.083814874363e-04, 1.8816e+00, 1.6195e-02, + 2DIAGNOSTIC, 71, -6.281845191610e-01, 2.400126455761e-04, 1.8943e+00, 1.2732e-02, + 2DIAGNOSTIC, 72, -6.281661534406e-01, 1.374010469895e-04, 1.9066e+00, 1.2271e-02, + 2DIAGNOSTIC, 73, -6.281728505537e-01, 6.363729358196e-05, 1.9211e+00, 1.4545e-02, + 2DIAGNOSTIC, 74, -6.281802792992e-01, 2.430924307719e-05, 1.9338e+00, 1.2659e-02, + 2DIAGNOSTIC, 75, -6.282173188438e-01, 7.619054570227e-06, 1.9460e+00, 1.2278e-02, + 2DIAGNOSTIC, 76, -6.282893808088e-01, 3.145331440458e-06, 1.9598e+00, 1.3735e-02, + 2DIAGNOSTIC, 77, -6.284447049621e-01, 4.456442820332e-06, 1.9765e+00, 1.6747e-02, + 2DIAGNOSTIC, 78, -6.284391436632e-01, 5.785444661503e-06, 1.9893e+00, 1.2721e-02, + 2DIAGNOSTIC, 79, -6.285267202694e-01, 7.375517914722e-06, 2.0118e+00, 2.2586e-02, + 2DIAGNOSTIC, 80, -6.285471085646e-01, 8.767805343601e-06, 2.0266e+00, 1.4766e-02, + 2DIAGNOSTIC, 81, -6.285307182919e-01, 9.127707256674e-06, 2.0393e+00, 1.2721e-02, + 2DIAGNOSTIC, 82, -6.285167124387e-01, 8.394493803986e-06, 2.0544e+00, 1.5102e-02, + 2DIAGNOSTIC, 83, -6.284720683074e-01, 6.646844213941e-06, 2.0688e+00, 1.4407e-02, + 2DIAGNOSTIC, 84, -6.284272157714e-01, 4.098348620078e-06, 2.0873e+00, 1.8483e-02, + 2DIAGNOSTIC, 85, -6.284105827536e-01, 1.442434266290e-06, 2.1326e+00, 4.5331e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.316014779984e-01, 1.797693134862e+308, 2.5570e+00, 4.2435e-01, + 2DIAGNOSTIC, 2, -5.324755509078e-01, 1.797693134862e+308, 2.6440e+00, 8.6973e-02, + 2DIAGNOSTIC, 3, -5.330044692491e-01, 1.797693134862e+308, 2.7283e+00, 8.4296e-02, + 2DIAGNOSTIC, 4, -5.333391090277e-01, 1.797693134862e+308, 2.8114e+00, 8.3118e-02, + 2DIAGNOSTIC, 5, -5.334815884465e-01, 1.797693134862e+308, 2.8991e+00, 8.7717e-02, + 2DIAGNOSTIC, 6, -5.336022406441e-01, 1.797693134862e+308, 3.0156e+00, 1.1655e-01, + 2DIAGNOSTIC, 7, -5.336640587144e-01, 1.797693134862e+308, 3.1148e+00, 9.9191e-02, + 2DIAGNOSTIC, 8, -5.339355385946e-01, 1.797693134862e+308, 3.2012e+00, 8.6328e-02, + 2DIAGNOSTIC, 9, -5.339907173317e-01, 1.797693134862e+308, 3.3010e+00, 9.9803e-02, + 2DIAGNOSTIC, 10, -5.340338244007e-01, 2.473297316681e-04, 3.3881e+00, 8.7106e-02, + 2DIAGNOSTIC, 11, -5.340910050831e-01, 1.576270891138e-04, 3.4768e+00, 8.8701e-02, + 2DIAGNOSTIC, 12, -5.341742980761e-01, 1.110123758620e-04, 3.6181e+00, 1.4131e-01, + 2DIAGNOSTIC, 13, -5.341974302183e-01, 8.392887993640e-05, 3.7090e+00, 9.0928e-02, + 2DIAGNOSTIC, 14, -5.342135990419e-01, 6.657283832008e-05, 3.7995e+00, 9.0445e-02, + 2DIAGNOSTIC, 15, -5.342512931867e-01, 5.212309758194e-05, 3.9050e+00, 1.0554e-01, + 2DIAGNOSTIC, 16, -5.342564361301e-01, 3.909925784380e-05, 4.0116e+00, 1.0659e-01, + 2DIAGNOSTIC, 17, -5.342880665600e-01, 2.688383988540e-05, 4.1221e+00, 1.1050e-01, + 2DIAGNOSTIC, 18, -5.343499760519e-01, 2.354634396216e-05, 4.2447e+00, 1.2261e-01, + 2DIAGNOSTIC, 19, -5.343497842809e-01, 2.005576540027e-05, 4.3408e+00, 9.6073e-02, + 2DIAGNOSTIC, 20, -5.343492703180e-01, 1.634849636539e-05, 4.4217e+00, 8.0922e-02, + 2DIAGNOSTIC, 21, -5.343511695508e-01, 1.308820602838e-05, 4.5439e+00, 1.2224e-01, + 2DIAGNOSTIC, 22, -5.343500087970e-01, 1.101474580693e-05, 4.6397e+00, 9.5779e-02, + 2DIAGNOSTIC, 23, -5.343486342414e-01, 8.706185211829e-06, 4.7359e+00, 9.6223e-02, + 2DIAGNOSTIC, 24, -5.343471273828e-01, 6.214114282137e-06, 4.8218e+00, 8.5876e-02, + 2DIAGNOSTIC, 25, -5.343457750780e-01, 4.263174924621e-06, 4.9196e+00, 9.7801e-02, + 2DIAGNOSTIC, 26, -5.343462229206e-01, 2.291793038782e-06, 5.0048e+00, 8.5138e-02, + Elapsed time (stage 0): 5.1461e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.755556283510e-01, 1.797693134862e+308, 2.0327e-01, 2.0327e-01, + 2DIAGNOSTIC, 2, -8.778885584883e-01, 1.797693134862e+308, 2.0485e-01, 1.5831e-03, + 2DIAGNOSTIC, 3, -8.820290088076e-01, 1.797693134862e+308, 2.0632e-01, 1.4691e-03, + 2DIAGNOSTIC, 4, -8.869020777279e-01, 1.797693134862e+308, 2.0781e-01, 1.4880e-03, + 2DIAGNOSTIC, 5, -9.036491020963e-01, 1.797693134862e+308, 2.0962e-01, 1.8079e-03, + 2DIAGNOSTIC, 6, -9.128716136893e-01, 1.797693134862e+308, 2.1172e-01, 2.1040e-03, + 2DIAGNOSTIC, 7, -9.188141916007e-01, 1.797693134862e+308, 2.1323e-01, 1.5111e-03, + 2DIAGNOSTIC, 8, -9.284053494911e-01, 1.797693134862e+308, 2.1462e-01, 1.3928e-03, + 2DIAGNOSTIC, 9, -9.331558673478e-01, 1.797693134862e+308, 2.1601e-01, 1.3909e-03, + 2DIAGNOSTIC, 10, -9.394606573452e-01, 5.059755422376e-03, 2.1764e-01, 1.6232e-03, + 2DIAGNOSTIC, 11, -9.463402940560e-01, 4.651347783613e-03, 2.1972e-01, 2.0800e-03, + 2DIAGNOSTIC, 12, -9.506719516755e-01, 4.069445194854e-03, 2.2212e-01, 2.4059e-03, + 2DIAGNOSTIC, 13, -9.536936152125e-01, 3.386269976764e-03, 2.2395e-01, 1.8239e-03, + 2DIAGNOSTIC, 14, -9.562250868806e-01, 2.653650593052e-03, 2.2576e-01, 1.8179e-03, + 2DIAGNOSTIC, 15, -9.606065442277e-01, 2.211626197547e-03, 2.2752e-01, 1.7519e-03, + 2DIAGNOSTIC, 16, -9.642716846044e-01, 1.868758519915e-03, 2.2974e-01, 2.2240e-03, + 2DIAGNOSTIC, 17, -9.639729970392e-01, 1.494029484647e-03, 2.3151e-01, 1.7691e-03, + 2DIAGNOSTIC, 18, -9.643079936388e-01, 1.195386270461e-03, 2.3312e-01, 1.6139e-03, + 2DIAGNOSTIC, 19, -9.640118620147e-01, 8.897181711954e-04, 2.3467e-01, 1.5440e-03, + 2DIAGNOSTIC, 20, -9.639265881895e-01, 6.252609638952e-04, 2.3612e-01, 1.4510e-03, + 2DIAGNOSTIC, 21, -9.648516666199e-01, 4.401607307264e-04, 2.3750e-01, 1.3800e-03, + 2DIAGNOSTIC, 22, -9.660219961672e-01, 3.071345993177e-04, 2.3906e-01, 1.5569e-03, + 2DIAGNOSTIC, 23, -9.682962946398e-01, 2.274929813065e-04, 2.4074e-01, 1.6880e-03, + 2DIAGNOSTIC, 24, -9.678168459397e-01, 1.579562476331e-04, 2.4231e-01, 1.5621e-03, + 2DIAGNOSTIC, 25, -9.676505056374e-01, 1.299522097268e-04, 2.4389e-01, 1.5881e-03, + 2DIAGNOSTIC, 26, -9.656480272178e-01, 1.116983138921e-04, 2.4530e-01, 1.4038e-03, + 2DIAGNOSTIC, 27, -9.663322464849e-01, 8.876060226407e-05, 2.4669e-01, 1.3912e-03, + 2DIAGNOSTIC, 28, -9.675559769421e-01, 7.534468119860e-05, 2.4831e-01, 1.6172e-03, + 2DIAGNOSTIC, 29, -9.695405480994e-01, 7.314346030313e-05, 2.4996e-01, 1.6570e-03, + 2DIAGNOSTIC, 30, -9.731285331941e-01, 9.948752377205e-05, 2.5310e-01, 3.1362e-03, + 2DIAGNOSTIC, 31, -9.731562178871e-01, 1.236222939684e-04, 2.5453e-01, 1.4288e-03, + 2DIAGNOSTIC, 32, -9.732742847511e-01, 1.466269946366e-04, 2.5584e-01, 1.3101e-03, + 2DIAGNOSTIC, 33, -9.734560546249e-01, 1.767755600405e-04, 2.5730e-01, 1.4660e-03, + 2DIAGNOSTIC, 34, -9.736689785849e-01, 1.855178737974e-04, 2.5872e-01, 1.4172e-03, + 2DIAGNOSTIC, 35, -9.738219333103e-01, 1.762424215772e-04, 2.6009e-01, 1.3690e-03, + 2DIAGNOSTIC, 36, -9.731710101155e-01, 1.288846838341e-04, 2.6149e-01, 1.4019e-03, + 2DIAGNOSTIC, 37, -9.733688428697e-01, 7.966679598419e-05, 2.6294e-01, 1.4472e-03, + 2DIAGNOSTIC, 38, -9.744721360566e-01, 4.369221158631e-05, 2.6455e-01, 1.6081e-03, + 2DIAGNOSTIC, 39, -9.746279616979e-01, 2.081778136468e-05, 2.6580e-01, 1.2550e-03, + 2DIAGNOSTIC, 40, -9.749189788080e-01, 2.628520805277e-05, 2.6746e-01, 1.6580e-03, + 2DIAGNOSTIC, 41, -9.743753145960e-01, 2.546508959464e-05, 2.6883e-01, 1.3671e-03, + 2DIAGNOSTIC, 42, -9.740357661210e-01, 2.087394923072e-05, 2.7026e-01, 1.4288e-03, + 2DIAGNOSTIC, 43, -9.745921605734e-01, 1.951362402743e-05, 2.7219e-01, 1.9372e-03, + 2DIAGNOSTIC, 44, -9.757407883523e-01, 2.533596192433e-05, 2.7476e-01, 2.5680e-03, + 2DIAGNOSTIC, 45, -9.752277958751e-01, 2.618560976446e-05, 2.7627e-01, 1.5092e-03, + 2DIAGNOSTIC, 46, -9.753415464484e-01, 2.145478513413e-05, 2.7764e-01, 1.3671e-03, + 2DIAGNOSTIC, 47, -9.757398117805e-01, 1.865460106589e-05, 2.7895e-01, 1.3099e-03, + 2DIAGNOSTIC, 48, -9.769380319123e-01, 2.826350774301e-05, 2.8111e-01, 2.1670e-03, + 2DIAGNOSTIC, 49, -9.798699508176e-01, 5.315060788368e-05, 2.8242e-01, 1.3041e-03, + 2DIAGNOSTIC, 50, -9.799288963408e-01, 7.384028911391e-05, 2.8398e-01, 1.5600e-03, + 2DIAGNOSTIC, 51, -9.800717137608e-01, 8.485493951432e-05, 2.8579e-01, 1.8139e-03, + 2DIAGNOSTIC, 52, -9.793077988060e-01, 8.118944273534e-05, 2.8728e-01, 1.4911e-03, + 2DIAGNOSTIC, 53, -9.793330725473e-01, 7.293896344804e-05, 2.8883e-01, 1.5430e-03, + 2DIAGNOSTIC, 54, -9.793956164674e-01, 6.449772352803e-05, 2.9045e-01, 1.6220e-03, + 2DIAGNOSTIC, 55, -9.795957634201e-01, 4.852035717263e-05, 2.9195e-01, 1.4999e-03, + 2DIAGNOSTIC, 56, -9.788885448580e-01, 2.562907743085e-05, 2.9389e-01, 1.9460e-03, + 2DIAGNOSTIC, 57, -9.789115132275e-01, 3.537354811858e-06, 2.9541e-01, 1.5111e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.012585172301e-01, 1.797693134862e+308, 5.1507e-01, 2.1966e-01, + 2DIAGNOSTIC, 2, -8.014493637968e-01, 1.797693134862e+308, 5.1745e-01, 2.3818e-03, + 2DIAGNOSTIC, 3, -8.045434701739e-01, 1.797693134862e+308, 5.1976e-01, 2.3110e-03, + 2DIAGNOSTIC, 4, -8.076537321005e-01, 1.797693134862e+308, 5.2217e-01, 2.4061e-03, + 2DIAGNOSTIC, 5, -8.097814014729e-01, 1.797693134862e+308, 5.2444e-01, 2.2750e-03, + 2DIAGNOSTIC, 6, -8.122430038581e-01, 1.797693134862e+308, 5.2655e-01, 2.1069e-03, + 2DIAGNOSTIC, 7, -8.151907228534e-01, 1.797693134862e+308, 5.2894e-01, 2.3921e-03, + 2DIAGNOSTIC, 8, -8.186155559296e-01, 1.797693134862e+308, 5.3316e-01, 4.2129e-03, + 2DIAGNOSTIC, 9, -8.181948811277e-01, 1.797693134862e+308, 5.3521e-01, 2.0511e-03, + 2DIAGNOSTIC, 10, -8.184488816223e-01, 1.602609763553e-03, 5.3749e-01, 2.2850e-03, + 2DIAGNOSTIC, 11, -8.189457256167e-01, 1.329214276751e-03, 5.3971e-01, 2.2149e-03, + 2DIAGNOSTIC, 12, -8.196675671095e-01, 1.006377227034e-03, 5.4194e-01, 2.2359e-03, + 2DIAGNOSTIC, 13, -8.199061475263e-01, 7.299787613898e-04, 5.4453e-01, 2.5821e-03, + 2DIAGNOSTIC, 14, -8.199906525381e-01, 5.075923711041e-04, 5.4706e-01, 2.5392e-03, + 2DIAGNOSTIC, 15, -8.199080148652e-01, 3.172627943282e-04, 5.4935e-01, 2.2860e-03, + 2DIAGNOSTIC, 16, -8.201365347329e-01, 1.795053423394e-04, 5.5160e-01, 2.2540e-03, + 2DIAGNOSTIC, 17, -8.206983715614e-01, 1.112986360792e-04, 5.5391e-01, 2.3010e-03, + 2DIAGNOSTIC, 18, -8.223750248157e-01, 1.394853761230e-04, 5.5649e-01, 2.5890e-03, + 2DIAGNOSTIC, 19, -8.241130875922e-01, 1.755413343699e-04, 5.6038e-01, 3.8810e-03, + 2DIAGNOSTIC, 20, -8.240782802753e-01, 1.952474064944e-04, 5.6261e-01, 2.2349e-03, + 2DIAGNOSTIC, 21, -8.241798415136e-01, 2.053988115676e-04, 5.6499e-01, 2.3780e-03, + 2DIAGNOSTIC, 22, -8.245343631032e-01, 2.126340845596e-04, 5.6804e-01, 3.0499e-03, + 2DIAGNOSTIC, 23, -8.256793602270e-01, 2.197000655548e-04, 5.7106e-01, 3.0220e-03, + 2DIAGNOSTIC, 24, -8.255009941322e-01, 2.036630960075e-04, 5.7385e-01, 2.7850e-03, + 2DIAGNOSTIC, 25, -8.257267595910e-01, 1.725560692480e-04, 5.7726e-01, 3.4111e-03, + 2DIAGNOSTIC, 26, -8.257295078315e-01, 1.313813631340e-04, 5.7995e-01, 2.6982e-03, + 2DIAGNOSTIC, 27, -8.257486091797e-01, 8.800555659263e-05, 5.8232e-01, 2.3651e-03, + 2DIAGNOSTIC, 28, -8.255718736131e-01, 5.735761370086e-05, 5.8468e-01, 2.3639e-03, + 2DIAGNOSTIC, 29, -8.255870149407e-01, 4.465162663446e-05, 5.8710e-01, 2.4140e-03, + 2DIAGNOSTIC, 30, -8.254047119884e-01, 2.634152432136e-05, 5.8951e-01, 2.4099e-03, + 2DIAGNOSTIC, 31, -8.254273703903e-01, 8.245509387321e-06, 5.9257e-01, 3.0658e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.024589365093e-01, 1.797693134862e+308, 8.4266e-01, 2.5008e-01, + 2DIAGNOSTIC, 2, -7.031041284983e-01, 1.797693134862e+308, 8.5629e-01, 1.3628e-02, + 2DIAGNOSTIC, 3, -7.038346328079e-01, 1.797693134862e+308, 8.6980e-01, 1.3515e-02, + 2DIAGNOSTIC, 4, -7.043219470344e-01, 1.797693134862e+308, 8.8314e-01, 1.3343e-02, + 2DIAGNOSTIC, 5, -7.051176032296e-01, 1.797693134862e+308, 8.9692e-01, 1.3778e-02, + 2DIAGNOSTIC, 6, -7.056565280570e-01, 1.797693134862e+308, 9.1783e-01, 2.0906e-02, + 2DIAGNOSTIC, 7, -7.058917664389e-01, 1.797693134862e+308, 9.3311e-01, 1.5284e-02, + 2DIAGNOSTIC, 8, -7.058762145638e-01, 1.797693134862e+308, 9.4704e-01, 1.3932e-02, + 2DIAGNOSTIC, 9, -7.059049817861e-01, 1.797693134862e+308, 9.6757e-01, 2.0524e-02, + 2DIAGNOSTIC, 10, -7.059469436885e-01, 3.334434242672e-04, 9.8274e-01, 1.5176e-02, + 2DIAGNOSTIC, 11, -7.059535288998e-01, 2.301151997947e-04, 9.9598e-01, 1.3239e-02, + 2DIAGNOSTIC, 12, -7.059904777298e-01, 1.463327966561e-04, 1.0093e+00, 1.3353e-02, + 2DIAGNOSTIC, 13, -7.060403537164e-01, 8.678670324516e-05, 1.0249e+00, 1.5549e-02, + 2DIAGNOSTIC, 14, -7.061103386166e-01, 4.374084462742e-05, 1.0408e+00, 1.5897e-02, + 2DIAGNOSTIC, 15, -7.061900456003e-01, 2.578483043042e-05, 1.0564e+00, 1.5623e-02, + 2DIAGNOSTIC, 16, -7.062453172090e-01, 2.268286145883e-05, 1.0698e+00, 1.3406e-02, + 2DIAGNOSTIC, 17, -7.062804590084e-01, 2.447752152523e-05, 1.0854e+00, 1.5605e-02, + 2DIAGNOSTIC, 18, -7.064202887495e-01, 2.675477346796e-05, 1.1009e+00, 1.5510e-02, + 2DIAGNOSTIC, 19, -7.064182697375e-01, 2.694088333415e-05, 1.1145e+00, 1.3602e-02, + 2DIAGNOSTIC, 20, -7.065001362689e-01, 2.728638140286e-05, 1.1282e+00, 1.3647e-02, + 2DIAGNOSTIC, 21, -7.067021790182e-01, 2.919207370018e-05, 1.1443e+00, 1.6103e-02, + 2DIAGNOSTIC, 22, -7.068913377511e-01, 3.237994640749e-05, 1.1669e+00, 2.2625e-02, + 2DIAGNOSTIC, 23, -7.069543002764e-01, 3.429725007399e-05, 1.1844e+00, 1.7530e-02, + 2DIAGNOSTIC, 24, -7.070187144424e-01, 3.525685696625e-05, 1.1979e+00, 1.3508e-02, + 2DIAGNOSTIC, 25, -7.070912410222e-01, 3.542147617726e-05, 1.2141e+00, 1.6114e-02, + 2DIAGNOSTIC, 26, -7.071745465898e-01, 3.444510256453e-05, 1.2298e+00, 1.5726e-02, + 2DIAGNOSTIC, 27, -7.071258832265e-01, 3.010131829277e-05, 1.2455e+00, 1.5716e-02, + 2DIAGNOSTIC, 28, -7.071803750428e-01, 2.621940428203e-05, 1.2592e+00, 1.3729e-02, + 2DIAGNOSTIC, 29, -7.071758116570e-01, 2.015666892086e-05, 1.2753e+00, 1.6086e-02, + 2DIAGNOSTIC, 30, -7.072610381357e-01, 1.488153007437e-05, 1.2914e+00, 1.6046e-02, + 2DIAGNOSTIC, 31, -7.073925588681e-01, 1.288312564304e-05, 1.3071e+00, 1.5761e-02, + 2DIAGNOSTIC, 32, -7.074483328749e-01, 1.293766404722e-05, 1.3288e+00, 2.1650e-02, + 2DIAGNOSTIC, 33, -7.074396911172e-01, 1.253152491260e-05, 1.3444e+00, 1.5639e-02, + 2DIAGNOSTIC, 34, -7.074379673019e-01, 1.180219944498e-05, 1.3602e+00, 1.5752e-02, + 2DIAGNOSTIC, 35, -7.074879826115e-01, 1.145502749349e-05, 1.3758e+00, 1.5601e-02, + 2DIAGNOSTIC, 36, -7.074994070542e-01, 1.115694655388e-05, 1.3915e+00, 1.5713e-02, + 2DIAGNOSTIC, 37, -7.074855885399e-01, 9.202915749171e-06, 1.4054e+00, 1.3892e-02, + 2DIAGNOSTIC, 38, -7.074732609650e-01, 7.052582332547e-06, 1.4205e+00, 1.5098e-02, + 2DIAGNOSTIC, 39, -7.075168885777e-01, 4.826528400663e-06, 1.4355e+00, 1.4997e-02, + 2DIAGNOSTIC, 40, -7.074825045218e-01, 2.783244430482e-06, 1.4487e+00, 1.3242e-02, + 2DIAGNOSTIC, 41, -7.074890442127e-01, 1.997576200612e-06, 1.4617e+00, 1.3031e-02, + 2DIAGNOSTIC, 42, -7.075366893180e-01, 2.136761888812e-06, 1.4769e+00, 1.5164e-02, + 2DIAGNOSTIC, 43, -7.075417042569e-01, 2.095345418548e-06, 1.4919e+00, 1.5024e-02, + 2DIAGNOSTIC, 44, -7.074859546076e-01, 1.386771298701e-06, 1.5051e+00, 1.3191e-02, + 2DIAGNOSTIC, 45, -7.074902042794e-01, 1.150453862377e-06, 1.5208e+00, 1.5660e-02, + 2DIAGNOSTIC, 46, -7.074929067793e-01, 1.006378579468e-06, 1.5361e+00, 1.5313e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.977376557526e-01, 1.797693134862e+308, 1.9711e+00, 4.3503e-01, + 2DIAGNOSTIC, 2, -5.984743686317e-01, 1.797693134862e+308, 2.0639e+00, 9.2816e-02, + 2DIAGNOSTIC, 3, -5.991954289676e-01, 1.797693134862e+308, 2.1569e+00, 9.3011e-02, + 2DIAGNOSTIC, 4, -5.995973226915e-01, 1.797693134862e+308, 2.2504e+00, 9.3490e-02, + 2DIAGNOSTIC, 5, -5.997746706811e-01, 1.797693134862e+308, 2.3620e+00, 1.1152e-01, + 2DIAGNOSTIC, 6, -5.998974980969e-01, 1.797693134862e+308, 2.4674e+00, 1.0543e-01, + 2DIAGNOSTIC, 7, -5.999074632239e-01, 1.797693134862e+308, 2.5969e+00, 1.2955e-01, + 2DIAGNOSTIC, 8, -5.999255776660e-01, 1.797693134862e+308, 2.7934e+00, 1.9645e-01, + 2DIAGNOSTIC, 9, -5.999182734777e-01, 1.797693134862e+308, 2.9002e+00, 1.0682e-01, + 2DIAGNOSTIC, 10, -5.999192357165e-01, 1.985566854176e-04, 2.9967e+00, 9.6526e-02, + 2DIAGNOSTIC, 11, -5.999188548424e-01, 1.052215252376e-04, 3.1389e+00, 1.4213e-01, + 2DIAGNOSTIC, 12, -5.999193899167e-01, 4.686090412326e-05, 3.2499e+00, 1.1103e-01, + 2DIAGNOSTIC, 13, -5.999158915771e-01, 1.937786004061e-05, 3.3466e+00, 9.6677e-02, + 2DIAGNOSTIC, 14, -5.999127123326e-01, 7.674136113148e-06, 3.4620e+00, 1.1541e-01, + 2DIAGNOSTIC, 15, -5.999116634666e-01, 2.513834573808e-06, 3.5759e+00, 1.1394e-01, + 2DIAGNOSTIC, 16, -5.999125924234e-01, 1.621695060974e-06, 3.6717e+00, 9.5766e-02, + 2DIAGNOSTIC, 17, -5.999121817390e-01, 1.115887670294e-06, 3.7672e+00, 9.5550e-02, + 2DIAGNOSTIC, 18, -5.999128534900e-01, 1.238449250061e-06, 3.8733e+00, 1.0609e-01, + 2DIAGNOSTIC, 19, -5.999106385322e-01, 1.160678149974e-06, 3.9797e+00, 1.0641e-01, + 2DIAGNOSTIC, 20, -5.999050568523e-01, 1.030222516865e-06, 4.0874e+00, 1.0768e-01, + Elapsed time (stage 1): 4.2016e+00 + + +Total elapsed time: 9.3511e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:04:51 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:04:51 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x564b542ed4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.551, 48.8152, -118.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564b542f2fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f318c853010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x564b542ee850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.551, 48.8152, -118.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564b542ebf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3189194010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x564b54305b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.551, 48.8152, -118.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564b542f2550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3185ad5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x564b5430ad70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.551, 48.8152, -118.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564b54308c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3182416010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x564b5430cf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.551, 48.8152, -118.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564b5430b3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f317ed57010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x564b5430d540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.551, 48.8152, -118.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x564b5430d4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f317b698010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.450870936631e-01, 1.797693134862e+308, 2.0515e-01, 2.0515e-01, + 2DIAGNOSTIC, 2, -6.479302001575e-01, 1.797693134862e+308, 2.0793e-01, 2.7740e-03, + 2DIAGNOSTIC, 3, -6.513216818287e-01, 1.797693134862e+308, 2.1061e-01, 2.6872e-03, + 2DIAGNOSTIC, 4, -6.554035516036e-01, 1.797693134862e+308, 2.1270e-01, 2.0831e-03, + 2DIAGNOSTIC, 5, -6.579442733315e-01, 1.797693134862e+308, 2.1470e-01, 2.0020e-03, + 2DIAGNOSTIC, 6, -6.603809466744e-01, 1.797693134862e+308, 2.1659e-01, 1.8899e-03, + 2DIAGNOSTIC, 7, -6.623019877829e-01, 1.797693134862e+308, 2.1844e-01, 1.8458e-03, + 2DIAGNOSTIC, 8, -6.634641334644e-01, 1.797693134862e+308, 2.2058e-01, 2.1420e-03, + 2DIAGNOSTIC, 9, -6.674668732397e-01, 1.797693134862e+308, 2.2377e-01, 3.1950e-03, + 2DIAGNOSTIC, 10, -6.675589349303e-01, 2.236109131623e-03, 2.2616e-01, 2.3899e-03, + 2DIAGNOSTIC, 11, -6.674365494746e-01, 1.770053274291e-03, 2.2854e-01, 2.3830e-03, + 2DIAGNOSTIC, 12, -6.672401088164e-01, 1.320042832876e-03, 2.3075e-01, 2.2049e-03, + 2DIAGNOSTIC, 13, -6.670712275284e-01, 9.251891138398e-04, 2.3301e-01, 2.2571e-03, + 2DIAGNOSTIC, 14, -6.671900246630e-01, 6.300679169610e-04, 2.3522e-01, 2.2109e-03, + 2DIAGNOSTIC, 15, -6.674005297365e-01, 3.947394987052e-04, 2.3776e-01, 2.5461e-03, + 2DIAGNOSTIC, 16, -6.672899300378e-01, 2.161044467549e-04, 2.4005e-01, 2.2821e-03, + 2DIAGNOSTIC, 17, -6.671814663189e-01, 8.547404702823e-05, 2.4256e-01, 2.5120e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.534645272526e-01, 1.797693134862e+308, 4.7871e-01, 2.3615e-01, + 2DIAGNOSTIC, 2, -5.544879873638e-01, 1.797693134862e+308, 4.9262e-01, 1.3912e-02, + 2DIAGNOSTIC, 3, -5.553784678580e-01, 1.797693134862e+308, 5.0623e-01, 1.3608e-02, + 2DIAGNOSTIC, 4, -5.558919383499e-01, 1.797693134862e+308, 5.2060e-01, 1.4374e-02, + 2DIAGNOSTIC, 5, -5.561009549208e-01, 1.797693134862e+308, 5.3463e-01, 1.4022e-02, + 2DIAGNOSTIC, 6, -5.563380578264e-01, 1.797693134862e+308, 5.4837e-01, 1.3748e-02, + 2DIAGNOSTIC, 7, -5.567118928672e-01, 1.797693134862e+308, 5.6484e-01, 1.6471e-02, + 2DIAGNOSTIC, 8, -5.569601856061e-01, 1.797693134862e+308, 5.7985e-01, 1.5004e-02, + 2DIAGNOSTIC, 9, -5.570089719276e-01, 1.797693134862e+308, 5.9832e-01, 1.8469e-02, + 2DIAGNOSTIC, 10, -5.570343623843e-01, 3.766170319585e-04, 6.1333e-01, 1.5008e-02, + 2DIAGNOSTIC, 11, -5.570687891207e-01, 2.479843445194e-04, 6.2696e-01, 1.3632e-02, + 2DIAGNOSTIC, 12, -5.571043246758e-01, 1.629339067034e-04, 6.4265e-01, 1.5689e-02, + 2DIAGNOSTIC, 13, -5.571192347754e-01, 1.115446764661e-04, 6.5832e-01, 1.5673e-02, + 2DIAGNOSTIC, 14, -5.571180233877e-01, 7.635593183276e-05, 6.7477e-01, 1.6455e-02, + 2DIAGNOSTIC, 15, -5.571144935877e-01, 4.616338047231e-05, 6.8966e-01, 1.4884e-02, + 2DIAGNOSTIC, 16, -5.571072768574e-01, 2.281457995239e-05, 7.0448e-01, 1.4819e-02, + 2DIAGNOSTIC, 17, -5.570982907429e-01, 1.105842202689e-05, 7.1925e-01, 1.4771e-02, + 2DIAGNOSTIC, 18, -5.570768083147e-01, 6.174666837951e-06, 7.3423e-01, 1.4985e-02, + 2DIAGNOSTIC, 19, -5.570800154239e-01, 2.811913278673e-06, 7.4751e-01, 1.3280e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.673809898356e-01, 1.797693134862e+308, 1.1332e+00, 3.8567e-01, + 2DIAGNOSTIC, 2, -4.681774487001e-01, 1.797693134862e+308, 1.2274e+00, 9.4187e-02, + 2DIAGNOSTIC, 3, -4.688919457902e-01, 1.797693134862e+308, 1.3191e+00, 9.1781e-02, + 2DIAGNOSTIC, 4, -4.694686989832e-01, 1.797693134862e+308, 1.4127e+00, 9.3579e-02, + 2DIAGNOSTIC, 5, -4.697189477131e-01, 1.797693134862e+308, 1.5286e+00, 1.1586e-01, + 2DIAGNOSTIC, 6, -4.697663904863e-01, 1.797693134862e+308, 1.6291e+00, 1.0052e-01, + 2DIAGNOSTIC, 7, -4.698839819261e-01, 1.797693134862e+308, 1.8483e+00, 2.1917e-01, + 2DIAGNOSTIC, 8, -4.698814577560e-01, 1.797693134862e+308, 1.9578e+00, 1.0956e-01, + 2DIAGNOSTIC, 9, -4.698820568278e-01, 1.797693134862e+308, 2.1114e+00, 1.5352e-01, + 2DIAGNOSTIC, 10, -4.698814706594e-01, 2.990902406952e-04, 2.2203e+00, 1.0890e-01, + 2DIAGNOSTIC, 11, -4.698792654296e-01, 1.653876194720e-04, 2.3273e+00, 1.0707e-01, + 2DIAGNOSTIC, 12, -4.698799564145e-01, 7.906326174718e-05, 2.4345e+00, 1.0716e-01, + 2DIAGNOSTIC, 13, -4.698780815285e-01, 3.170709617728e-05, 2.5277e+00, 9.3247e-02, + 2DIAGNOSTIC, 14, -4.698776994925e-01, 1.318721439877e-05, 2.6471e+00, 1.1942e-01, + 2DIAGNOSTIC, 15, -4.698768660671e-01, 6.209510157562e-06, 2.7551e+00, 1.0796e-01, + 2DIAGNOSTIC, 16, -4.698758927385e-01, 1.360596020558e-06, 2.8535e+00, 9.8345e-02, + 2DIAGNOSTIC, 17, -4.698724815677e-01, 1.209024703776e-06, 2.9496e+00, 9.6144e-02, + 2DIAGNOSTIC, 18, -4.698735213692e-01, 1.087111621743e-06, 3.0577e+00, 1.0807e-01, + 2DIAGNOSTIC, 19, -4.698744106179e-01, 1.086399360049e-06, 3.1530e+00, 9.5292e-02, + 2DIAGNOSTIC, 20, -4.698745452789e-01, 1.126562899703e-06, 3.2505e+00, 9.7542e-02, + 2DIAGNOSTIC, 21, -4.698769689067e-01, 1.212716483942e-06, 3.3644e+00, 1.1396e-01, + 2DIAGNOSTIC, 22, -4.698779271843e-01, 1.365776809058e-06, 3.4949e+00, 1.3046e-01, + 2DIAGNOSTIC, 23, -4.698777860590e-01, 1.459546191886e-06, 3.6033e+00, 1.0837e-01, + 2DIAGNOSTIC, 24, -4.698758496638e-01, 1.479740869822e-06, 3.6980e+00, 9.4705e-02, + 2DIAGNOSTIC, 25, -4.698743947954e-01, 1.429913232071e-06, 3.7967e+00, 9.8666e-02, + 2DIAGNOSTIC, 26, -4.698731415839e-01, 1.319574947298e-06, 3.9202e+00, 1.2359e-01, + 2DIAGNOSTIC, 27, -4.698723510163e-01, 1.113013526996e-06, 4.0277e+00, 1.0750e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.121652700439e-01, 1.797693134862e+308, 5.5968e+00, 1.5690e+00, + 2DIAGNOSTIC, 2, -4.121660722671e-01, 1.797693134862e+308, 6.6995e+00, 1.1027e+00, + 2DIAGNOSTIC, 3, -4.121658728251e-01, 1.797693134862e+308, 7.3289e+00, 6.2938e-01, + 2DIAGNOSTIC, 4, -4.121658268055e-01, 1.797693134862e+308, 7.9523e+00, 6.2345e-01, + 2DIAGNOSTIC, 5, -4.121656826351e-01, 1.797693134862e+308, 8.5611e+00, 6.0879e-01, + 2DIAGNOSTIC, 6, -4.121655380762e-01, 1.797693134862e+308, 9.2297e+00, 6.6863e-01, + 2DIAGNOSTIC, 7, -4.121653134453e-01, 1.797693134862e+308, 9.8690e+00, 6.3929e-01, + 2DIAGNOSTIC, 8, -4.121653237912e-01, 1.797693134862e+308, 1.0557e+01, 6.8768e-01, + 2DIAGNOSTIC, 9, -4.121653423452e-01, 1.797693134862e+308, 1.1199e+01, 6.4249e-01, + 2DIAGNOSTIC, 10, -4.121649916293e-01, 3.073073102738e-06, 1.1840e+01, 6.4049e-01, + 2DIAGNOSTIC, 11, -4.121651619670e-01, 2.752340259232e-06, 1.2464e+01, 6.2396e-01, + 2DIAGNOSTIC, 12, -4.121649953191e-01, 2.533993763876e-06, 1.3101e+01, 6.3734e-01, + 2DIAGNOSTIC, 13, -4.121648283724e-01, 2.340296956324e-06, 1.3743e+01, 6.4238e-01, + 2DIAGNOSTIC, 14, -4.121646614708e-01, 2.173726360341e-06, 1.4321e+01, 5.7776e-01, + 2DIAGNOSTIC, 15, -4.121645804556e-01, 2.028312686350e-06, 1.4951e+01, 6.2971e-01, + 2DIAGNOSTIC, 16, -4.121647155682e-01, 1.909288700863e-06, 1.5582e+01, 6.3089e-01, + 2DIAGNOSTIC, 17, -4.121645114384e-01, 1.793705493719e-06, 1.6218e+01, 6.3643e-01, + 2DIAGNOSTIC, 18, -4.121643245373e-01, 1.691673158270e-06, 1.6964e+01, 7.4602e-01, + 2DIAGNOSTIC, 19, -4.121640901200e-01, 1.600209147114e-06, 1.7588e+01, 6.2433e-01, + 2DIAGNOSTIC, 20, -4.121639811674e-01, 1.508677612151e-06, 1.8143e+01, 5.5476e-01, + 2DIAGNOSTIC, 21, -4.121640436728e-01, 1.441002019972e-06, 1.8790e+01, 6.4626e-01, + 2DIAGNOSTIC, 22, -4.121641327716e-01, 1.383876905167e-06, 1.9419e+01, 6.2901e-01, + 2DIAGNOSTIC, 23, -4.121640929116e-01, 1.331539529484e-06, 1.9954e+01, 5.3515e-01, + 2DIAGNOSTIC, 24, -4.121639804270e-01, 1.280620281457e-06, 2.0578e+01, 6.2400e-01, + 2DIAGNOSTIC, 25, -4.121640132362e-01, 1.236576004128e-06, 2.1165e+01, 5.8750e-01, + 2DIAGNOSTIC, 26, -4.121640200458e-01, 1.202942591712e-06, 2.1809e+01, 6.4387e-01, + 2DIAGNOSTIC, 27, -4.121641708116e-01, 1.172306795132e-06, 2.2509e+01, 6.9965e-01, + 2DIAGNOSTIC, 28, -4.121641601088e-01, 1.139629476926e-06, 2.3100e+01, 5.9161e-01, + 2DIAGNOSTIC, 29, -4.121641490407e-01, 1.103257812288e-06, 2.3674e+01, 5.7359e-01, + 2DIAGNOSTIC, 30, -4.121643756733e-01, 1.071439437665e-06, 2.4380e+01, 7.0593e-01, + 2DIAGNOSTIC, 31, -4.121643523789e-01, 1.041217130460e-06, 2.5020e+01, 6.3988e-01, + 2DIAGNOSTIC, 32, -4.121645269840e-01, 1.017157682574e-06, 2.5735e+01, 7.1541e-01, + Elapsed time (stage 0): 2.6100e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.517532941038e-01, 1.797693134862e+308, 1.9209e-01, 1.9209e-01, + 2DIAGNOSTIC, 2, -6.530972053902e-01, 1.797693134862e+308, 1.9424e-01, 2.1579e-03, + 2DIAGNOSTIC, 3, -6.552014995119e-01, 1.797693134862e+308, 1.9638e-01, 2.1350e-03, + 2DIAGNOSTIC, 4, -6.577644066844e-01, 1.797693134862e+308, 1.9854e-01, 2.1639e-03, + 2DIAGNOSTIC, 5, -6.606992474478e-01, 1.797693134862e+308, 2.0066e-01, 2.1210e-03, + 2DIAGNOSTIC, 6, -6.626940002404e-01, 1.797693134862e+308, 2.0267e-01, 2.0101e-03, + 2DIAGNOSTIC, 7, -6.640173589084e-01, 1.797693134862e+308, 2.0489e-01, 2.2161e-03, + 2DIAGNOSTIC, 8, -6.650356412681e-01, 1.797693134862e+308, 2.0753e-01, 2.6410e-03, + 2DIAGNOSTIC, 9, -6.650866607583e-01, 1.797693134862e+308, 2.0961e-01, 2.0750e-03, + 2DIAGNOSTIC, 10, -6.657297272660e-01, 1.493062653983e-03, 2.1242e-01, 2.8150e-03, + 2DIAGNOSTIC, 11, -6.659363090682e-01, 1.153531751708e-03, 2.1534e-01, 2.9202e-03, + 2DIAGNOSTIC, 12, -6.659419751513e-01, 8.158049847322e-04, 2.1795e-01, 2.6109e-03, + 2DIAGNOSTIC, 13, -6.660603631141e-01, 5.299684528753e-04, 2.2031e-01, 2.3570e-03, + 2DIAGNOSTIC, 14, -6.663516734788e-01, 3.234855901024e-04, 2.2266e-01, 2.3532e-03, + 2DIAGNOSTIC, 15, -6.709263730642e-01, 3.289006975920e-04, 2.2589e-01, 3.2279e-03, + 2DIAGNOSTIC, 16, -6.715226512479e-01, 3.689091173431e-04, 2.2825e-01, 2.3620e-03, + 2DIAGNOSTIC, 17, -6.722995654971e-01, 4.238822141591e-04, 2.3112e-01, 2.8658e-03, + 2DIAGNOSTIC, 18, -6.726122726547e-01, 4.669232263572e-04, 2.3374e-01, 2.6259e-03, + 2DIAGNOSTIC, 19, -6.731118867827e-01, 4.740433325170e-04, 2.3694e-01, 3.1929e-03, + 2DIAGNOSTIC, 20, -6.740404633725e-01, 4.683739038293e-04, 2.3949e-01, 2.5499e-03, + 2DIAGNOSTIC, 21, -6.740760211448e-01, 4.239151359796e-04, 2.4178e-01, 2.2891e-03, + 2DIAGNOSTIC, 22, -6.739667407486e-01, 3.436110875389e-04, 2.4407e-01, 2.2950e-03, + 2DIAGNOSTIC, 23, -6.740132012766e-01, 2.426420355477e-04, 2.4635e-01, 2.2781e-03, + 2DIAGNOSTIC, 24, -6.743428640774e-01, 1.363614445637e-04, 2.4894e-01, 2.5890e-03, + 2DIAGNOSTIC, 25, -6.741662307195e-01, 1.004605809995e-04, 2.5124e-01, 2.2981e-03, + 2DIAGNOSTIC, 26, -6.750968172132e-01, 8.297126031086e-05, 2.5460e-01, 3.3660e-03, + 2DIAGNOSTIC, 27, -6.746037853252e-01, 6.342439887851e-05, 2.6202e-01, 7.4198e-03, + 2DIAGNOSTIC, 28, -6.746037551957e-01, 4.445165745832e-05, 2.6449e-01, 2.4731e-03, + 2DIAGNOSTIC, 29, -6.746037985831e-01, 2.969426205635e-05, 2.6677e-01, 2.2790e-03, + 2DIAGNOSTIC, 30, -6.746038719355e-01, 2.623438429925e-05, 2.6908e-01, 2.3110e-03, + 2DIAGNOSTIC, 31, -6.746039958960e-01, 2.105177034567e-05, 2.7134e-01, 2.2578e-03, + 2DIAGNOSTIC, 32, -6.746042052908e-01, 1.291162654338e-05, 2.7363e-01, 2.2850e-03, + 2DIAGNOSTIC, 33, -6.746045587446e-01, 4.812981639429e-06, 2.7590e-01, 2.2700e-03, + 2DIAGNOSTIC, 34, -6.746051546334e-01, 1.060463136172e-06, 2.7819e-01, 2.2891e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.571148223439e-01, 1.797693134862e+308, 5.1881e-01, 2.4062e-01, + 2DIAGNOSTIC, 2, -5.581501468921e-01, 1.797693134862e+308, 5.3406e-01, 1.5252e-02, + 2DIAGNOSTIC, 3, -5.594797436974e-01, 1.797693134862e+308, 5.5003e-01, 1.5971e-02, + 2DIAGNOSTIC, 4, -5.607054269487e-01, 1.797693134862e+308, 5.6679e-01, 1.6752e-02, + 2DIAGNOSTIC, 5, -5.610661490297e-01, 1.797693134862e+308, 5.8201e-01, 1.5222e-02, + 2DIAGNOSTIC, 6, -5.611934303464e-01, 1.797693134862e+308, 5.9909e-01, 1.7081e-02, + 2DIAGNOSTIC, 7, -5.612804686365e-01, 1.797693134862e+308, 6.1422e-01, 1.5126e-02, + 2DIAGNOSTIC, 8, -5.612521340328e-01, 1.797693134862e+308, 6.3128e-01, 1.7068e-02, + 2DIAGNOSTIC, 9, -5.614112128586e-01, 1.797693134862e+308, 6.4795e-01, 1.6662e-02, + 2DIAGNOSTIC, 10, -5.614149279649e-01, 4.436139631401e-04, 6.6539e-01, 1.7445e-02, + 2DIAGNOSTIC, 11, -5.613968797804e-01, 2.580388990408e-04, 6.8456e-01, 1.9168e-02, + 2DIAGNOSTIC, 12, -5.614199974626e-01, 1.246122122575e-04, 7.0366e-01, 1.9100e-02, + 2DIAGNOSTIC, 13, -5.613758959974e-01, 4.969979098664e-05, 7.2038e-01, 1.6722e-02, + 2DIAGNOSTIC, 14, -5.613756153985e-01, 2.526977392267e-05, 7.4095e-01, 2.0566e-02, + 2DIAGNOSTIC, 15, -5.613659258229e-01, 1.373656147854e-05, 7.5966e-01, 1.8712e-02, + 2DIAGNOSTIC, 16, -5.613511859492e-01, 6.131762093603e-06, 7.7679e-01, 1.7136e-02, + 2DIAGNOSTIC, 17, -5.613548857587e-01, 1.834194290111e-06, 7.9343e-01, 1.6640e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.683882993809e-01, 1.797693134862e+308, 1.1817e+00, 3.8829e-01, + 2DIAGNOSTIC, 2, -4.688492513535e-01, 1.797693134862e+308, 1.2863e+00, 1.0462e-01, + 2DIAGNOSTIC, 3, -4.692639624661e-01, 1.797693134862e+308, 1.3914e+00, 1.0507e-01, + 2DIAGNOSTIC, 4, -4.694853924122e-01, 1.797693134862e+308, 1.5091e+00, 1.1769e-01, + 2DIAGNOSTIC, 5, -4.695629978145e-01, 1.797693134862e+308, 1.6171e+00, 1.0795e-01, + 2DIAGNOSTIC, 6, -4.696881824909e-01, 1.797693134862e+308, 1.7183e+00, 1.0129e-01, + 2DIAGNOSTIC, 7, -4.701284553661e-01, 1.797693134862e+308, 1.8858e+00, 1.6751e-01, + 2DIAGNOSTIC, 8, -4.702758776102e-01, 1.797693134862e+308, 1.9908e+00, 1.0499e-01, + 2DIAGNOSTIC, 9, -4.703645607439e-01, 1.797693134862e+308, 2.0947e+00, 1.0386e-01, + 2DIAGNOSTIC, 10, -4.705076910309e-01, 2.739576502315e-04, 2.2400e+00, 1.4527e-01, + 2DIAGNOSTIC, 11, -4.705581119003e-01, 2.129097640154e-04, 2.3413e+00, 1.0131e-01, + 2DIAGNOSTIC, 12, -4.706555048440e-01, 1.706295902333e-04, 2.4677e+00, 1.2642e-01, + 2DIAGNOSTIC, 13, -4.706822635900e-01, 1.398823916840e-04, 2.5977e+00, 1.3003e-01, + 2DIAGNOSTIC, 14, -4.706844364167e-01, 1.109333905064e-04, 2.7267e+00, 1.2896e-01, + 2DIAGNOSTIC, 15, -4.706858614638e-01, 7.923959939747e-05, 2.8829e+00, 1.5622e-01, + 2DIAGNOSTIC, 16, -4.706860503149e-01, 4.877435987680e-05, 2.9973e+00, 1.1437e-01, + 2DIAGNOSTIC, 17, -4.706841281663e-01, 3.308524224017e-05, 3.1140e+00, 1.1672e-01, + 2DIAGNOSTIC, 18, -4.706818504464e-01, 2.110852597549e-05, 3.2149e+00, 1.0092e-01, + 2DIAGNOSTIC, 19, -4.706806259078e-01, 1.132089797050e-05, 3.3296e+00, 1.1470e-01, + 2DIAGNOSTIC, 20, -4.706816171417e-01, 5.976260443026e-06, 3.4311e+00, 1.0147e-01, + 2DIAGNOSTIC, 21, -4.706840126797e-01, 2.180621628080e-06, 3.5465e+00, 1.1541e-01, + 2DIAGNOSTIC, 22, -4.706850917592e-01, 1.353106864561e-06, 3.6613e+00, 1.1484e-01, + 2DIAGNOSTIC, 23, -4.706853067137e-01, 1.315859294831e-06, 3.7625e+00, 1.0116e-01, + 2DIAGNOSTIC, 24, -4.706844163768e-01, 1.320475224519e-06, 3.8911e+00, 1.2862e-01, + 2DIAGNOSTIC, 25, -4.706833765912e-01, 1.333618586404e-06, 3.9936e+00, 1.0247e-01, + 2DIAGNOSTIC, 26, -4.706832448614e-01, 1.341008689801e-06, 4.0960e+00, 1.0240e-01, + 2DIAGNOSTIC, 27, -4.706831306707e-01, 1.291645479462e-06, 4.2158e+00, 1.1980e-01, + 2DIAGNOSTIC, 28, -4.706813864131e-01, 1.149831833483e-06, 4.3354e+00, 1.1957e-01, + 2DIAGNOSTIC, 29, -4.706821209362e-01, 1.008099690412e-06, 4.4507e+00, 1.1537e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.119241056859e-01, 1.797693134862e+308, 5.7724e+00, 1.3217e+00, + 2DIAGNOSTIC, 2, -4.122672436583e-01, 1.797693134862e+308, 6.3920e+00, 6.1960e-01, + 2DIAGNOSTIC, 3, -4.124773229596e-01, 1.797693134862e+308, 7.0175e+00, 6.2549e-01, + 2DIAGNOSTIC, 4, -4.126130776766e-01, 1.797693134862e+308, 7.6407e+00, 6.2316e-01, + 2DIAGNOSTIC, 5, -4.127118504741e-01, 1.797693134862e+308, 8.7057e+00, 1.0651e+00, + 2DIAGNOSTIC, 6, -4.127186667949e-01, 1.797693134862e+308, 9.6710e+00, 9.6529e-01, + 2DIAGNOSTIC, 7, -4.127192604833e-01, 1.797693134862e+308, 1.0381e+01, 7.1018e-01, + 2DIAGNOSTIC, 8, -4.127194581047e-01, 1.797693134862e+308, 1.1088e+01, 7.0718e-01, + 2DIAGNOSTIC, 9, -4.127189823623e-01, 1.797693134862e+308, 1.1888e+01, 8.0002e-01, + 2DIAGNOSTIC, 10, -4.127185463886e-01, 1.003006775108e-04, 1.2493e+01, 6.0427e-01, + 2DIAGNOSTIC, 11, -4.127183763784e-01, 4.922692337916e-05, 1.3385e+01, 8.9252e-01, + 2DIAGNOSTIC, 12, -4.127183689555e-01, 2.204904664765e-05, 1.4164e+01, 7.7892e-01, + 2DIAGNOSTIC, 13, -4.127179575278e-01, 8.274026360472e-06, 1.4863e+01, 6.9870e-01, + 2DIAGNOSTIC, 14, -4.127179381569e-01, 2.482616661137e-06, 1.5623e+01, 7.6036e-01, + 2DIAGNOSTIC, 15, -4.127178611816e-01, 1.968343278883e-06, 1.6268e+01, 6.4478e-01, + 2DIAGNOSTIC, 16, -4.127176860093e-01, 1.817314579655e-06, 1.6887e+01, 6.1854e-01, + 2DIAGNOSTIC, 17, -4.127177372681e-01, 1.725453779113e-06, 1.7579e+01, 6.9263e-01, + 2DIAGNOSTIC, 18, -4.127175737525e-01, 1.658907216595e-06, 1.8280e+01, 7.0083e-01, + 2DIAGNOSTIC, 19, -4.127175799078e-01, 1.592957016162e-06, 1.8976e+01, 6.9568e-01, + 2DIAGNOSTIC, 20, -4.127176504424e-01, 1.528557928732e-06, 1.9689e+01, 7.1321e-01, + 2DIAGNOSTIC, 21, -4.127174695925e-01, 1.464367216292e-06, 2.0394e+01, 7.0478e-01, + 2DIAGNOSTIC, 22, -4.127174879327e-01, 1.411612873987e-06, 2.1039e+01, 6.4512e-01, + 2DIAGNOSTIC, 23, -4.127173907109e-01, 1.351379962558e-06, 2.1761e+01, 7.2187e-01, + 2DIAGNOSTIC, 24, -4.127172927352e-01, 1.295824537728e-06, 2.2457e+01, 6.9653e-01, + 2DIAGNOSTIC, 25, -4.127172718909e-01, 1.244938184188e-06, 2.3161e+01, 7.0425e-01, + 2DIAGNOSTIC, 26, -4.127172068563e-01, 1.194130654102e-06, 2.3796e+01, 6.3455e-01, + 2DIAGNOSTIC, 27, -4.127171972296e-01, 1.151098537870e-06, 2.4502e+01, 7.0586e-01, + 2DIAGNOSTIC, 28, -4.127172454097e-01, 1.110841249707e-06, 2.5107e+01, 6.0514e-01, + 2DIAGNOSTIC, 29, -4.127174258624e-01, 1.080085835790e-06, 2.5724e+01, 6.1664e-01, + 2DIAGNOSTIC, 30, -4.127178274053e-01, 1.063822368849e-06, 2.6405e+01, 6.8114e-01, + 2DIAGNOSTIC, 31, -4.127183178424e-01, 1.054932416727e-06, 2.7117e+01, 7.1195e-01, + 2DIAGNOSTIC, 32, -4.127182176243e-01, 1.042016236540e-06, 2.7897e+01, 7.8066e-01, + 2DIAGNOSTIC, 33, -4.127180496869e-01, 1.020132508127e-06, 2.8632e+01, 7.3466e-01, + Elapsed time (stage 1): 2.9048e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.041264270200e-01, 1.797693134862e+308, 2.5174e-01, 2.5174e-01, + 1DIAGNOSTIC, 2, -9.162458082320e-01, 1.797693134862e+308, 3.4868e-01, 9.6934e-02, + 1DIAGNOSTIC, 3, -9.249440404241e-01, 1.797693134862e+308, 4.4272e-01, 9.4044e-02, + 1DIAGNOSTIC, 4, -9.313028611537e-01, 1.797693134862e+308, 5.4591e-01, 1.0319e-01, + 1DIAGNOSTIC, 5, -9.362626720574e-01, 1.797693134862e+308, 6.4104e-01, 9.5123e-02, + 1DIAGNOSTIC, 6, -9.398976909316e-01, 1.797693134862e+308, 7.3011e-01, 8.9071e-02, + 1DIAGNOSTIC, 7, -9.425547579234e-01, 1.797693134862e+308, 8.2523e-01, 9.5127e-02, + 1DIAGNOSTIC, 8, -9.448395966710e-01, 1.797693134862e+308, 9.2409e-01, 9.8855e-02, + 1DIAGNOSTIC, 9, -9.467293675038e-01, 1.797693134862e+308, 1.0194e+00, 9.5361e-02, + 1DIAGNOSTIC, 10, -9.483256901237e-01, 2.763083377556e-03, 1.1186e+00, 9.9164e-02, + 1DIAGNOSTIC, 11, -9.497183670399e-01, 1.914406598907e-03, 1.2159e+00, 9.7325e-02, + 1DIAGNOSTIC, 12, -9.507804707306e-01, 1.367615383847e-03, 1.3105e+00, 9.4523e-02, + 1DIAGNOSTIC, 13, -9.516791592950e-01, 1.004308218181e-03, 1.4038e+00, 9.3372e-02, + 1DIAGNOSTIC, 14, -9.524840726296e-01, 7.556605882411e-04, 1.4998e+00, 9.5981e-02, + 1DIAGNOSTIC, 15, -9.531813901431e-01, 5.845831863966e-04, 1.5946e+00, 9.4789e-02, + 1DIAGNOSTIC, 16, -9.537548140248e-01, 4.604090144812e-04, 1.6897e+00, 9.5140e-02, + 1DIAGNOSTIC, 17, -9.542428719659e-01, 3.640497197715e-04, 1.7857e+00, 9.5998e-02, + 1DIAGNOSTIC, 18, -9.546708606645e-01, 2.900671824701e-04, 1.8774e+00, 9.1618e-02, + 1DIAGNOSTIC, 19, -9.550030840200e-01, 2.320832845746e-04, 1.9746e+00, 9.7280e-02, + 1DIAGNOSTIC, 20, -9.552554745614e-01, 1.860342210864e-04, 2.0708e+00, 9.6170e-02, + 1DIAGNOSTIC, 21, -9.555061773094e-01, 1.505735393582e-04, 2.1634e+00, 9.2629e-02, + 1DIAGNOSTIC, 22, -9.557369478436e-01, 1.219394931615e-04, 2.2598e+00, 9.6356e-02, + 1DIAGNOSTIC, 23, -9.559634873310e-01, 9.907414924229e-05, 2.3529e+00, 9.3117e-02, + 1DIAGNOSTIC, 24, -9.561824267767e-01, 8.164654091267e-05, 2.4487e+00, 9.5787e-02, + 1DIAGNOSTIC, 25, -9.563568773654e-01, 6.845078100979e-05, 2.5465e+00, 9.7846e-02, + 1DIAGNOSTIC, 26, -9.565419700456e-01, 5.863482375984e-05, 2.6433e+00, 9.6805e-02, + 1DIAGNOSTIC, 27, -9.566302001231e-01, 5.045207122498e-05, 2.7465e+00, 1.0314e-01, + 1DIAGNOSTIC, 28, -9.562788472062e-01, 3.897972137961e-05, 2.8395e+00, 9.3052e-02, + 1DIAGNOSTIC, 29, -9.562667706194e-01, 2.813412734802e-05, 2.9352e+00, 9.5678e-02, + 1DIAGNOSTIC, 30, -9.559728668080e-01, 1.497252522258e-05, 3.0280e+00, 9.2791e-02, + 1DIAGNOSTIC, 31, -9.559940232677e-01, 3.962924908500e-06, 3.1290e+00, 1.0102e-01, + 1DIAGNOSTIC, 32, -9.558379561506e-01, -5.988590442714e-06, 3.2296e+00, 1.0056e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.085270745484e-01, 1.797693134862e+308, 4.0832e+00, 8.5359e-01, + 1DIAGNOSTIC, 2, -9.137769456330e-01, 1.797693134862e+308, 4.7556e+00, 6.7244e-01, + 1DIAGNOSTIC, 3, -9.183424977331e-01, 1.797693134862e+308, 5.4244e+00, 6.6882e-01, + 1DIAGNOSTIC, 4, -9.222319748293e-01, 1.797693134862e+308, 6.1066e+00, 6.8215e-01, + 1DIAGNOSTIC, 5, -9.254341065004e-01, 1.797693134862e+308, 6.7515e+00, 6.4492e-01, + 1DIAGNOSTIC, 6, -9.280098286470e-01, 1.797693134862e+308, 7.4261e+00, 6.7459e-01, + 1DIAGNOSTIC, 7, -9.302458083778e-01, 1.797693134862e+308, 8.0966e+00, 6.7054e-01, + 1DIAGNOSTIC, 8, -9.323349595193e-01, 1.797693134862e+308, 8.7767e+00, 6.8002e-01, + 1DIAGNOSTIC, 9, -9.338116078502e-01, 1.797693134862e+308, 9.4416e+00, 6.6490e-01, + 1DIAGNOSTIC, 10, -9.350852744416e-01, 1.787269802771e-03, 1.0116e+01, 6.7452e-01, + 1DIAGNOSTIC, 11, -9.361869965018e-01, 1.363611655842e-03, 1.0789e+01, 6.7301e-01, + 1DIAGNOSTIC, 12, -9.371565039641e-01, 1.046235880632e-03, 1.1469e+01, 6.7969e-01, + 1DIAGNOSTIC, 13, -9.379889675628e-01, 8.094822798813e-04, 1.2132e+01, 6.6307e-01, + 1DIAGNOSTIC, 14, -9.387039093485e-01, 6.330849115521e-04, 1.2826e+01, 6.9426e-01, + 1DIAGNOSTIC, 15, -9.393365394372e-01, 5.002971445616e-04, 1.3503e+01, 6.7689e-01, + 1DIAGNOSTIC, 16, -9.398885464196e-01, 3.976450760339e-04, 1.4186e+01, 6.8272e-01, + 1DIAGNOSTIC, 17, -9.403768097246e-01, 3.189886887113e-04, 1.4862e+01, 6.7627e-01, + 1DIAGNOSTIC, 18, -9.408224142791e-01, 2.624175088971e-04, 1.5551e+01, 6.8949e-01, + 1DIAGNOSTIC, 19, -9.412018516464e-01, 2.171546680408e-04, 1.6234e+01, 6.8248e-01, + 1DIAGNOSTIC, 20, -9.415389754798e-01, 1.807128982368e-04, 1.6911e+01, 6.7662e-01, + 1DIAGNOSTIC, 21, -9.418401990157e-01, 1.512043028285e-04, 1.7589e+01, 6.7863e-01, + 1DIAGNOSTIC, 22, -9.421121011148e-01, 1.274117137417e-04, 1.8261e+01, 6.7200e-01, + 1DIAGNOSTIC, 23, -9.423539753354e-01, 1.079741525340e-04, 1.8945e+01, 6.8375e-01, + 1DIAGNOSTIC, 24, -9.425714277445e-01, 9.186169358013e-05, 1.9621e+01, 6.7594e-01, + 1DIAGNOSTIC, 25, -9.427671743889e-01, 7.851443299104e-05, 2.0298e+01, 6.7695e-01, + 1DIAGNOSTIC, 26, -9.429422008835e-01, 6.734266839059e-05, 2.0973e+01, 6.7539e-01, + 1DIAGNOSTIC, 27, -9.431004988688e-01, 5.796631362303e-05, 2.1649e+01, 6.7587e-01, + 1DIAGNOSTIC, 28, -9.432453189396e-01, 5.024407362656e-05, 2.2328e+01, 6.7933e-01, + 1DIAGNOSTIC, 29, -9.433802678678e-01, 4.374667636094e-05, 2.3000e+01, 6.7144e-01, + 1DIAGNOSTIC, 30, -9.435092632620e-01, 3.831678551780e-05, 2.3674e+01, 6.7420e-01, + 1DIAGNOSTIC, 31, -9.436251209534e-01, 3.374864853601e-05, 2.4337e+01, 6.6323e-01, + 1DIAGNOSTIC, 32, -9.437325267963e-01, 2.992449985862e-05, 2.5022e+01, 6.8480e-01, + 1DIAGNOSTIC, 33, -9.438298346538e-01, 2.667279487076e-05, 2.5707e+01, 6.8452e-01, + 1DIAGNOSTIC, 34, -9.439179642729e-01, 2.386746884198e-05, 2.6387e+01, 6.8047e-01, + 1DIAGNOSTIC, 35, -9.440020008546e-01, 2.144091712376e-05, 2.7070e+01, 6.8276e-01, + 1DIAGNOSTIC, 36, -9.440808659363e-01, 1.931090393724e-05, 2.7752e+01, 6.8253e-01, + 1DIAGNOSTIC, 37, -9.441558935444e-01, 1.743311254490e-05, 2.8428e+01, 6.7592e-01, + 1DIAGNOSTIC, 38, -9.442263317166e-01, 1.577380351859e-05, 2.9122e+01, 6.9362e-01, + 1DIAGNOSTIC, 39, -9.442930595373e-01, 1.432523073363e-05, 2.9808e+01, 6.8608e-01, + 1DIAGNOSTIC, 40, -9.443550899318e-01, 1.309175176364e-05, 3.0491e+01, 6.8268e-01, + 1DIAGNOSTIC, 41, -9.444132505323e-01, 1.201586853177e-05, 3.1163e+01, 6.7265e-01, + 1DIAGNOSTIC, 42, -9.444674307892e-01, 1.107008920099e-05, 3.1845e+01, 6.8205e-01, + 1DIAGNOSTIC, 43, -9.445186345768e-01, 1.021759891556e-05, 3.2527e+01, 6.8192e-01, + 1DIAGNOSTIC, 44, -9.445668544821e-01, 9.425431011591e-06, 3.3212e+01, 6.8472e-01, + 1DIAGNOSTIC, 45, -9.446123774222e-01, 8.698054107734e-06, 3.3892e+01, 6.7985e-01, + 1DIAGNOSTIC, 46, -9.446581815170e-01, 8.049009975288e-06, 3.4596e+01, 7.0412e-01, + 1DIAGNOSTIC, 47, -9.447000069501e-01, 7.466926774401e-06, 3.5273e+01, 6.7711e-01, + 1DIAGNOSTIC, 48, -9.447379661244e-01, 6.934371379382e-06, 3.5942e+01, 6.6848e-01, + 1DIAGNOSTIC, 49, -9.447744386037e-01, 6.453221441827e-06, 3.6618e+01, 6.7684e-01, + 1DIAGNOSTIC, 50, -9.448101018238e-01, 6.019523617826e-06, 3.7300e+01, 6.8111e-01, + 1DIAGNOSTIC, 51, -9.448337888816e-01, 5.565546158985e-06, 3.7980e+01, 6.8083e-01, + 1DIAGNOSTIC, 52, -9.448645689301e-01, 5.145030232828e-06, 3.8665e+01, 6.8478e-01, + 1DIAGNOSTIC, 53, -9.448933921637e-01, 4.756697480818e-06, 3.9342e+01, 6.7654e-01, + 1DIAGNOSTIC, 54, -9.449210643122e-01, 4.403519830325e-06, 4.0027e+01, 6.8483e-01, + 1DIAGNOSTIC, 55, -9.449471063633e-01, 4.085568717869e-06, 4.0709e+01, 6.8275e-01, + 1DIAGNOSTIC, 56, -9.449715703053e-01, 3.817953259905e-06, 4.1380e+01, 6.7102e-01, + 1DIAGNOSTIC, 57, -9.450036280157e-01, 3.635956981909e-06, 4.2059e+01, 6.7830e-01, + 1DIAGNOSTIC, 58, -9.450258049806e-01, 3.472321177620e-06, 4.2746e+01, 6.8689e-01, + 1DIAGNOSTIC, 59, -9.450475109892e-01, 3.327675182310e-06, 4.3439e+01, 6.9398e-01, + 1DIAGNOSTIC, 60, -9.450658786290e-01, 3.190671913511e-06, 4.4147e+01, 7.0797e-01, + 1DIAGNOSTIC, 61, -9.450824538473e-01, 2.998967576728e-06, 4.4851e+01, 7.0370e-01, + 1DIAGNOSTIC, 62, -9.450946436678e-01, 2.781492261947e-06, 4.5535e+01, 6.8352e-01, + 1DIAGNOSTIC, 63, -9.451105708202e-01, 2.565123279123e-06, 4.6246e+01, 7.1147e-01, + 1DIAGNOSTIC, 64, -9.451180534137e-01, 2.321153951521e-06, 4.6922e+01, 6.7621e-01, + 1DIAGNOSTIC, 65, -9.451309931903e-01, 2.089460586257e-06, 4.7607e+01, 6.8490e-01, + 1DIAGNOSTIC, 66, -9.451451365760e-01, 1.884421988389e-06, 4.8289e+01, 6.8129e-01, + 1DIAGNOSTIC, 67, -9.451573247030e-01, 1.747786263533e-06, 4.8964e+01, 6.7591e-01, + 1DIAGNOSTIC, 68, -9.451770051893e-01, 1.676746251754e-06, 4.9625e+01, 6.6030e-01, + 1DIAGNOSTIC, 69, -9.451895549482e-01, 1.639041460173e-06, 5.0276e+01, 6.5075e-01, + 1DIAGNOSTIC, 70, -9.451992772937e-01, 1.609018890094e-06, 5.0951e+01, 6.7556e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.969199293922e-01, 1.797693134862e+308, 5.6686e+01, 5.7352e+00, + 1DIAGNOSTIC, 2, -8.996157224991e-01, 1.797693134862e+308, 6.2157e+01, 5.4708e+00, + 1DIAGNOSTIC, 3, -9.024534089855e-01, 1.797693134862e+308, 6.7650e+01, 5.4925e+00, + 1DIAGNOSTIC, 4, -9.050755382833e-01, 1.797693134862e+308, 7.3099e+01, 5.4493e+00, + 1DIAGNOSTIC, 5, -9.072935865312e-01, 1.797693134862e+308, 7.8509e+01, 5.4102e+00, + 1DIAGNOSTIC, 6, -9.091438402080e-01, 1.797693134862e+308, 8.3955e+01, 5.4465e+00, + 1DIAGNOSTIC, 7, -9.109246757552e-01, 1.797693134862e+308, 8.9464e+01, 5.5089e+00, + 1DIAGNOSTIC, 8, -9.127077083109e-01, 1.797693134862e+308, 9.4870e+01, 5.4054e+00, + 1DIAGNOSTIC, 9, -9.145488335331e-01, 1.797693134862e+308, 1.0039e+02, 5.5162e+00, + 1DIAGNOSTIC, 10, -9.165073468243e-01, 1.345721660454e-03, 1.0582e+02, 5.4381e+00, + 1DIAGNOSTIC, 11, -9.184482468898e-01, 1.157043931474e-03, 1.1124e+02, 5.4208e+00, + 1DIAGNOSTIC, 12, -9.201636332218e-01, 1.009926598406e-03, 1.1671e+02, 5.4614e+00, + 1DIAGNOSTIC, 13, -9.216838379172e-01, 8.980299726422e-04, 1.2216e+02, 5.4566e+00, + 1DIAGNOSTIC, 14, -9.228937559831e-01, 8.052443881462e-04, 1.2761e+02, 5.4451e+00, + 1DIAGNOSTIC, 15, -9.239970376771e-01, 7.198800458093e-04, 1.3323e+02, 5.6248e+00, + 1DIAGNOSTIC, 16, -9.250129816028e-01, 6.345318226039e-04, 1.3873e+02, 5.4935e+00, + 1DIAGNOSTIC, 17, -9.258155219392e-01, 5.477648667098e-04, 1.4422e+02, 5.4916e+00, + 1DIAGNOSTIC, 18, -9.265763632666e-01, 4.638084265104e-04, 1.4965e+02, 5.4352e+00, + 1DIAGNOSTIC, 19, -9.273043931398e-01, 3.874969416069e-04, 1.5512e+02, 5.4668e+00, + 1DIAGNOSTIC, 20, -9.279971497461e-01, 3.236627020819e-04, 1.6059e+02, 5.4738e+00, + 1DIAGNOSTIC, 21, -9.286561879193e-01, 2.738894422064e-04, 1.6608e+02, 5.4836e+00, + 1DIAGNOSTIC, 22, -9.292564801864e-01, 2.354823191629e-04, 1.7153e+02, 5.4484e+00, + 1DIAGNOSTIC, 23, -9.298027181612e-01, 2.061133374445e-04, 1.7699e+02, 5.4675e+00, + 1DIAGNOSTIC, 24, -9.302999296986e-01, 1.817810737986e-04, 1.8249e+02, 5.4972e+00, + 1DIAGNOSTIC, 25, -9.307555234214e-01, 1.615059954500e-04, 1.8802e+02, 5.5341e+00, + 1DIAGNOSTIC, 26, -9.311689385091e-01, 1.445564224566e-04, 1.9353e+02, 5.5089e+00, + 1DIAGNOSTIC, 27, -9.315507957839e-01, 1.287747890903e-04, 1.9901e+02, 5.4807e+00, + 1DIAGNOSTIC, 28, -9.319007320879e-01, 1.142104870354e-04, 2.0441e+02, 5.3937e+00, + 1DIAGNOSTIC, 29, -9.322252633654e-01, 1.010591190536e-04, 2.0977e+02, 5.3646e+00, + 1DIAGNOSTIC, 30, -9.325297817269e-01, 8.947791412654e-05, 2.1513e+02, 5.3550e+00, + 1DIAGNOSTIC, 31, -9.328166008671e-01, 7.958438321562e-05, 2.2050e+02, 5.3718e+00, + 1DIAGNOSTIC, 32, -9.330887149317e-01, 7.118016917821e-05, 2.2587e+02, 5.3737e+00, + 1DIAGNOSTIC, 33, -9.333505095929e-01, 6.409315132994e-05, 2.3123e+02, 5.3531e+00, + 1DIAGNOSTIC, 34, -9.335895474678e-01, 5.802630561813e-05, 2.3657e+02, 5.3437e+00, + 1DIAGNOSTIC, 35, -9.338224505053e-01, 5.287564905510e-05, 2.4202e+02, 5.4525e+00, + 1DIAGNOSTIC, 36, -9.340418116383e-01, 4.841984040088e-05, 2.4736e+02, 5.3388e+00, + 1DIAGNOSTIC, 37, -9.342585018124e-01, 4.460450465574e-05, 2.5272e+02, 5.3627e+00, + 1DIAGNOSTIC, 38, -9.344619066778e-01, 4.125229880202e-05, 2.5809e+02, 5.3686e+00, + 1DIAGNOSTIC, 39, -9.346549073983e-01, 3.825648036816e-05, 2.6349e+02, 5.3976e+00, + 1DIAGNOSTIC, 40, -9.348358305993e-01, 3.553074720802e-05, 2.6883e+02, 5.3443e+00, + 1DIAGNOSTIC, 41, -9.349981444668e-01, 3.295205821724e-05, 2.7427e+02, 5.4356e+00, + 1DIAGNOSTIC, 42, -9.351478225947e-01, 3.047431007644e-05, 2.7966e+02, 5.3921e+00, + 1DIAGNOSTIC, 43, -9.352885871230e-01, 2.811792831123e-05, 2.8505e+02, 5.3877e+00, + 1DIAGNOSTIC, 44, -9.354237909912e-01, 2.583383328733e-05, 2.9040e+02, 5.3467e+00, + 1DIAGNOSTIC, 45, -9.355471392859e-01, 2.365304658841e-05, 2.9575e+02, 5.3563e+00, + 1DIAGNOSTIC, 46, -9.356611386895e-01, 2.157095228721e-05, 3.0114e+02, 5.3869e+00, + 1DIAGNOSTIC, 47, -9.357666291664e-01, 1.966038670552e-05, 3.0655e+02, 5.4155e+00, + 1DIAGNOSTIC, 48, -9.358670217693e-01, 1.793154815362e-05, 3.1191e+02, 5.3554e+00, + 1DIAGNOSTIC, 49, -9.359535746377e-01, 1.634721871657e-05, 3.1732e+02, 5.4093e+00, + 1DIAGNOSTIC, 50, -9.360332232668e-01, 1.490280042209e-05, 3.2268e+02, 5.3577e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.019517993209e-01, 1.797693134862e+308, 3.6693e+02, 4.4255e+01, + 1DIAGNOSTIC, 2, -9.025623711380e-01, 1.797693134862e+308, 4.1030e+02, 4.3364e+01, + 1DIAGNOSTIC, 3, -9.035509728666e-01, 1.797693134862e+308, 4.5378e+02, 4.3484e+01, + 1DIAGNOSTIC, 4, -9.047024425403e-01, 1.797693134862e+308, 4.9709e+02, 4.3306e+01, + 1DIAGNOSTIC, 5, -9.059644434584e-01, 1.797693134862e+308, 5.4064e+02, 4.3554e+01, + 1DIAGNOSTIC, 6, -9.075401859717e-01, 1.797693134862e+308, 5.8418e+02, 4.3541e+01, + 1DIAGNOSTIC, 7, -9.090624218199e-01, 1.797693134862e+308, 6.2756e+02, 4.3378e+01, + 1DIAGNOSTIC, 8, -9.104885649791e-01, 1.797693134862e+308, 6.7136e+02, 4.3798e+01, + 1DIAGNOSTIC, 9, -9.117764394462e-01, 1.797693134862e+308, 7.1486e+02, 4.3500e+01, + 1DIAGNOSTIC, 10, -9.128886871517e-01, 8.226485750701e-04, 7.5830e+02, 4.3442e+01, + 1DIAGNOSTIC, 11, -9.138637123495e-01, 7.654608763433e-04, 8.0167e+02, 4.3369e+01, + 1DIAGNOSTIC, 12, -9.147265496639e-01, 6.872634607177e-04, 8.4531e+02, 4.3642e+01, + 1DIAGNOSTIC, 13, -9.154909027112e-01, 6.010103236982e-04, 8.8898e+02, 4.3673e+01, + 1DIAGNOSTIC, 14, -9.160496499035e-01, 5.105567553640e-04, 9.3243e+02, 4.3452e+01, + 1DIAGNOSTIC, 15, -9.165392640730e-01, 4.218411134940e-04, 9.7623e+02, 4.3794e+01, + 1DIAGNOSTIC, 16, -9.169890809187e-01, 3.448683015459e-04, 1.0197e+03, 4.3481e+01, + 1DIAGNOSTIC, 17, -9.174334964532e-01, 2.810786151838e-04, 1.0633e+03, 4.3550e+01, + 1DIAGNOSTIC, 18, -9.178510496822e-01, 2.301551804934e-04, 1.1070e+03, 4.3695e+01, + 1DIAGNOSTIC, 19, -9.181622587807e-01, 1.893961638366e-04, 1.1506e+03, 4.3670e+01, + 1DIAGNOSTIC, 20, -9.184848689822e-01, 1.574501708151e-04, 1.1944e+03, 4.3763e+01, + Elapsed time (stage 2): 1195 + + +Total elapsed time: 1250 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:17 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:17 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:20 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:25 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:28 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:28 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5556 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:29 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:32 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:32 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5602 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:32 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:35 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:35 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5667 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:35 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5682 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:35 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:16 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:18 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:18 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:21 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:22 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:23 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:24 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:24 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:26 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC002 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:36 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:47 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC002 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:48 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC002 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:48 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC002 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:48 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6807 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:50 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:51 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6848 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:52 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:52 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC002_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 68.650 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/logs/proc_func_18-03-2024-19615.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:59 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC002 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/QC/sub-PNC002_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC002* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 68.700 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC002_ses-03 +========================reprocessing without filter=================== +sub-PNC003_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC003 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC003 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC003 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC003 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:28:19 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:28:20 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz is 32.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:30:28 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:32:36 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:32:51 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.46 (mm) at sub-brick 3 +++ Max delta displ in automask = 0.17 (mm) at sub-brick 120 +** Warning: overwriting file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mainScan.1D + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:53:57 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:54:32 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz is 32.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:58:39 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:02:49 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz is 32.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:06:49 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.411 -1.927 2.873 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 111.5 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.464 -2.706 5.429 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 74.3 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:14:07 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:14:36 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55e7a14566f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [108.102, 61.1182, -111.963] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e7a12cd730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e7a146d320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55e7a1459fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.8093, 114.5, -133.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e7a145fe10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e7a1c6a230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55e7a1c685c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [108.102, 61.1182, -111.963] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e7a145c3f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e7a2794450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55e7a1c66da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.8093, 114.5, -133.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e7a1463360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e7a2f8e780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.585273036792e-01, 1.797693134862e+308, 4.0252e-02, 4.0251e-02, + 2DIAGNOSTIC, 2, -6.620090701585e-01, 1.797693134862e+308, 4.1547e-02, 1.2951e-03, + 2DIAGNOSTIC, 3, -6.680075775999e-01, 1.797693134862e+308, 4.2852e-02, 1.3051e-03, + 2DIAGNOSTIC, 4, -6.730559204152e-01, 1.797693134862e+308, 4.4227e-02, 1.3750e-03, + 2DIAGNOSTIC, 5, -6.783021244080e-01, 1.797693134862e+308, 4.5594e-02, 1.3671e-03, + 2DIAGNOSTIC, 6, -6.806629429264e-01, 1.797693134862e+308, 4.6837e-02, 1.2431e-03, + 2DIAGNOSTIC, 7, -6.859441428758e-01, 1.797693134862e+308, 4.8573e-02, 1.7359e-03, + 2DIAGNOSTIC, 8, -6.878184155029e-01, 1.797693134862e+308, 4.9837e-02, 1.2641e-03, + 2DIAGNOSTIC, 9, -6.881912863631e-01, 1.797693134862e+308, 5.1076e-02, 1.2391e-03, + 2DIAGNOSTIC, 10, -6.911364982754e-01, 3.183538628849e-03, 5.2572e-02, 1.4958e-03, + 2DIAGNOSTIC, 11, -7.094173621233e-01, 3.176351929827e-03, 5.4945e-02, 2.3730e-03, + 2DIAGNOSTIC, 12, -7.107938276920e-01, 3.033686688507e-03, 5.6666e-02, 1.7209e-03, + 2DIAGNOSTIC, 13, -7.117285835376e-01, 2.866218346248e-03, 5.8114e-02, 1.4482e-03, + 2DIAGNOSTIC, 14, -7.329030766406e-01, 3.238655575049e-03, 5.9606e-02, 1.4920e-03, + 2DIAGNOSTIC, 15, -7.406583984853e-01, 3.599621975564e-03, 6.1553e-02, 1.9472e-03, + 2DIAGNOSTIC, 16, -7.442261017823e-01, 3.724194433867e-03, 6.3080e-02, 1.5261e-03, + 2DIAGNOSTIC, 17, -7.453514626036e-01, 3.650719754882e-03, 6.4561e-02, 1.4811e-03, + 2DIAGNOSTIC, 18, -7.473224616898e-01, 3.344328495971e-03, 6.6068e-02, 1.5070e-03, + 2DIAGNOSTIC, 19, -7.871465447216e-01, 3.603081166222e-03, 6.7814e-02, 1.7459e-03, + 2DIAGNOSTIC, 20, -8.329373302256e-01, 4.425880015453e-03, 6.9505e-02, 1.6911e-03, + 2DIAGNOSTIC, 21, -8.198803367740e-01, 4.840795790879e-03, 7.1432e-02, 1.9271e-03, + 2DIAGNOSTIC, 22, -8.279605326063e-01, 4.964543899935e-03, 7.2915e-02, 1.4830e-03, + 2DIAGNOSTIC, 23, -8.463896385916e-01, 4.933640696007e-03, 7.4614e-02, 1.6992e-03, + 2DIAGNOSTIC, 24, -8.637613431444e-01, 5.038039997654e-03, 7.6093e-02, 1.4789e-03, + 2DIAGNOSTIC, 25, -8.776435288548e-01, 4.975978977441e-03, 7.9154e-02, 3.0608e-03, + 2DIAGNOSTIC, 26, -8.785699511419e-01, 4.532157700691e-03, 8.0606e-02, 1.4520e-03, + 2DIAGNOSTIC, 27, -8.804181034166e-01, 3.764594186704e-03, 8.2067e-02, 1.4610e-03, + 2DIAGNOSTIC, 28, -8.843304388178e-01, 2.773191397990e-03, 8.3763e-02, 1.6959e-03, + 2DIAGNOSTIC, 29, -8.869613632098e-01, 2.125865435221e-03, 8.5207e-02, 1.4448e-03, + 2DIAGNOSTIC, 30, -8.890119094887e-01, 1.928666526113e-03, 8.6659e-02, 1.4520e-03, + 2DIAGNOSTIC, 31, -8.906301441246e-01, 1.430736638196e-03, 8.8089e-02, 1.4291e-03, + 2DIAGNOSTIC, 32, -8.955811120606e-01, 9.824924462597e-04, 8.9981e-02, 1.8921e-03, + 2DIAGNOSTIC, 33, -8.969445468434e-01, 6.875324851078e-04, 9.1872e-02, 1.8919e-03, + 2DIAGNOSTIC, 34, -8.995040647993e-01, 5.575888603521e-04, 9.3323e-02, 1.4510e-03, + 2DIAGNOSTIC, 35, -9.071439454747e-01, 6.071664205561e-04, 9.5041e-02, 1.7171e-03, + 2DIAGNOSTIC, 36, -9.091085658976e-01, 6.233515105275e-04, 9.7443e-02, 2.4021e-03, + 2DIAGNOSTIC, 37, -9.094259304739e-01, 5.999968693616e-04, 9.8920e-02, 1.4770e-03, + 2DIAGNOSTIC, 38, -9.111625413315e-01, 5.751192227730e-04, 1.0038e-01, 1.4608e-03, + 2DIAGNOSTIC, 39, -9.137428694131e-01, 5.444355515394e-04, 1.0183e-01, 1.4489e-03, + 2DIAGNOSTIC, 40, -9.154026604647e-01, 4.954507241264e-04, 1.0326e-01, 1.4348e-03, + 2DIAGNOSTIC, 41, -9.181748234300e-01, 4.389429704388e-04, 1.0492e-01, 1.6570e-03, + 2DIAGNOSTIC, 42, -9.194422535481e-01, 3.968053387363e-04, 1.1035e-01, 5.4290e-03, + 2DIAGNOSTIC, 43, -9.194421944987e-01, 3.306505945439e-04, 1.1178e-01, 1.4341e-03, + 2DIAGNOSTIC, 44, -9.194426532045e-01, 2.554270435072e-04, 1.1323e-01, 1.4491e-03, + 2DIAGNOSTIC, 45, -9.194434286832e-01, 2.187464469215e-04, 1.1470e-01, 1.4701e-03, + 2DIAGNOSTIC, 46, -9.194447394226e-01, 1.779598604940e-04, 1.1618e-01, 1.4770e-03, + 2DIAGNOSTIC, 47, -9.194469541970e-01, 1.244054554562e-04, 1.1763e-01, 1.4451e-03, + 2DIAGNOSTIC, 48, -9.194506945892e-01, 7.403572652764e-05, 1.1913e-01, 1.5001e-03, + 2DIAGNOSTIC, 49, -9.194570059495e-01, 3.729084716836e-05, 1.2055e-01, 1.4241e-03, + 2DIAGNOSTIC, 50, -9.194676395931e-01, 9.789493140358e-06, 1.2199e-01, 1.4429e-03, + 2DIAGNOSTIC, 51, -9.194856717600e-01, 1.232675451626e-06, 1.2343e-01, 1.4420e-03, + 2DIAGNOSTIC, 52, -9.195159693475e-01, 1.571494530492e-06, 1.2491e-01, 1.4780e-03, + 2DIAGNOSTIC, 53, -9.195662960567e-01, 2.132702483948e-06, 1.2641e-01, 1.4961e-03, + 2DIAGNOSTIC, 54, -9.196488538498e-01, 3.051113122172e-06, 1.2787e-01, 1.4629e-03, + 2DIAGNOSTIC, 55, -9.197818249179e-01, 4.524667348647e-06, 1.2927e-01, 1.3990e-03, + 2DIAGNOSTIC, 56, -9.199877656712e-01, 6.815767810791e-06, 1.3071e-01, 1.4369e-03, + 2DIAGNOSTIC, 57, -9.202872730729e-01, 1.020578939289e-05, 1.3216e-01, 1.4491e-03, + 2DIAGNOSTIC, 58, -9.206788295646e-01, 1.483445659315e-05, 1.3359e-01, 1.4331e-03, + 2DIAGNOSTIC, 59, -9.211108602127e-01, 2.041156459889e-05, 1.3513e-01, 1.5380e-03, + 2DIAGNOSTIC, 60, -9.215330076761e-01, 2.629421918036e-05, 1.3659e-01, 1.4601e-03, + 2DIAGNOSTIC, 61, -9.220652999576e-01, 3.252158922866e-05, 1.3808e-01, 1.4920e-03, + 2DIAGNOSTIC, 62, -9.235424275480e-01, 4.362084473338e-05, 1.3982e-01, 1.7450e-03, + 2DIAGNOSTIC, 63, -9.283698155569e-01, 7.610184366965e-05, 1.4156e-01, 1.7302e-03, + 2DIAGNOSTIC, 64, -9.292029658164e-01, 1.043958379506e-04, 1.4360e-01, 2.0480e-03, + 2DIAGNOSTIC, 65, -9.290865864974e-01, 1.221003677970e-04, 1.4531e-01, 1.7090e-03, + 2DIAGNOSTIC, 66, -9.292861216905e-01, 1.299865838883e-04, 1.4680e-01, 1.4920e-03, + 2DIAGNOSTIC, 67, -9.293577800620e-01, 1.268263035930e-04, 1.4825e-01, 1.4460e-03, + 2DIAGNOSTIC, 68, -9.294428630166e-01, 1.135130359894e-04, 1.4972e-01, 1.4729e-03, + 2DIAGNOSTIC, 69, -9.304637782080e-01, 9.672151942906e-05, 1.5141e-01, 1.6870e-03, + 2DIAGNOSTIC, 70, -9.305424412478e-01, 7.382656342215e-05, 1.5380e-01, 2.3849e-03, + 2DIAGNOSTIC, 71, -9.307195458389e-01, 4.807940415376e-05, 1.5551e-01, 1.7161e-03, + 2DIAGNOSTIC, 72, -9.307510149094e-01, 2.494642132891e-05, 1.5691e-01, 1.4009e-03, + 2DIAGNOSTIC, 73, -9.321558761756e-01, 2.841302921366e-05, 1.5838e-01, 1.4629e-03, + 2DIAGNOSTIC, 74, -9.324906271349e-01, 3.411048552575e-05, 1.6008e-01, 1.7021e-03, + 2DIAGNOSTIC, 75, -9.334814525563e-01, 4.025906540850e-05, 1.6157e-01, 1.4892e-03, + 2DIAGNOSTIC, 76, -9.413351795156e-01, 7.753066592730e-05, 1.6398e-01, 2.4118e-03, + 2DIAGNOSTIC, 77, -9.441763283901e-01, 1.179474172967e-04, 1.6549e-01, 1.5121e-03, + 2DIAGNOSTIC, 78, -9.444476270716e-01, 1.473153747601e-04, 1.6684e-01, 1.3521e-03, + 2DIAGNOSTIC, 79, -9.459505527163e-01, 1.728238003924e-04, 1.6819e-01, 1.3490e-03, + 2DIAGNOSTIC, 80, -9.460781722575e-01, 1.817579632966e-04, 1.6991e-01, 1.7140e-03, + 2DIAGNOSTIC, 81, -9.443970597144e-01, 1.664143644093e-04, 1.7325e-01, 3.3479e-03, + 2DIAGNOSTIC, 82, -9.445136625188e-01, 1.359554620095e-04, 1.7516e-01, 1.9050e-03, + 2DIAGNOSTIC, 83, -9.449481642981e-01, 1.008401894477e-04, 1.7739e-01, 2.2330e-03, + 2DIAGNOSTIC, 84, -9.451889872120e-01, 5.937405828092e-05, 1.7961e-01, 2.2190e-03, + 2DIAGNOSTIC, 85, -9.444030871290e-01, 1.334420353697e-05, 1.8201e-01, 2.3980e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.564369410271e-01, 1.797693134862e+308, 2.2535e-01, 4.3344e-02, + 2DIAGNOSTIC, 2, -5.562588116999e-01, 1.797693134862e+308, 2.2751e-01, 2.1579e-03, + 2DIAGNOSTIC, 3, -5.565408129675e-01, 1.797693134862e+308, 2.2972e-01, 2.2061e-03, + 2DIAGNOSTIC, 4, -5.587110691345e-01, 1.797693134862e+308, 2.3188e-01, 2.1670e-03, + 2DIAGNOSTIC, 5, -5.668824633279e-01, 1.797693134862e+308, 2.3485e-01, 2.9721e-03, + 2DIAGNOSTIC, 6, -5.689441902096e-01, 1.797693134862e+308, 2.4293e-01, 8.0709e-03, + 2DIAGNOSTIC, 7, -5.689441457862e-01, 1.797693134862e+308, 2.4509e-01, 2.1629e-03, + 2DIAGNOSTIC, 8, -5.689442606628e-01, 1.797693134862e+308, 2.4727e-01, 2.1770e-03, + 2DIAGNOSTIC, 9, -5.689444549113e-01, 1.797693134862e+308, 2.4939e-01, 2.1250e-03, + 2DIAGNOSTIC, 10, -5.689447833524e-01, 1.888824389355e-03, 2.5176e-01, 2.3730e-03, + 2DIAGNOSTIC, 11, -5.689453386552e-01, 1.452719629096e-03, 2.5410e-01, 2.3372e-03, + 2DIAGNOSTIC, 12, -5.689462774189e-01, 9.585173104708e-04, 2.5642e-01, 2.3181e-03, + 2DIAGNOSTIC, 13, -5.689478641546e-01, 4.682825032565e-04, 2.5875e-01, 2.3289e-03, + 2DIAGNOSTIC, 14, -5.689505453032e-01, 7.673259626342e-05, 2.6118e-01, 2.4309e-03, + 2DIAGNOSTIC, 15, -5.689550733795e-01, 2.801295748339e-06, 2.6374e-01, 2.5582e-03, + 2DIAGNOSTIC, 16, -5.689627212148e-01, 3.063005399942e-06, 2.6620e-01, 2.4581e-03, + 2DIAGNOSTIC, 17, -5.689756212469e-01, 3.571412849832e-06, 2.6853e-01, 2.3341e-03, + 2DIAGNOSTIC, 18, -5.689973174021e-01, 4.468574722638e-06, 2.7084e-01, 2.3110e-03, + 2DIAGNOSTIC, 19, -5.690346059120e-01, 6.000910903067e-06, 2.7317e-01, 2.3260e-03, + 2DIAGNOSTIC, 20, -5.690973310801e-01, 8.542481774745e-06, 2.7596e-01, 2.7940e-03, + 2DIAGNOSTIC, 21, -5.692018362600e-01, 1.267594509974e-05, 2.7874e-01, 2.7812e-03, + 2DIAGNOSTIC, 22, -5.693700210573e-01, 1.920243473184e-05, 2.8158e-01, 2.8429e-03, + 2DIAGNOSTIC, 23, -5.696518771156e-01, 2.961156399241e-05, 2.8442e-01, 2.8329e-03, + 2DIAGNOSTIC, 24, -5.700756409973e-01, 4.530277124469e-05, 2.8726e-01, 2.8391e-03, + 2DIAGNOSTIC, 25, -5.707581750940e-01, 6.922710377132e-05, 2.9011e-01, 2.8551e-03, + 2DIAGNOSTIC, 26, -5.726822696002e-01, 1.218867085589e-04, 2.9335e-01, 3.2370e-03, + 2DIAGNOSTIC, 27, -5.769699236915e-01, 2.381381269395e-04, 2.9672e-01, 3.3710e-03, + 2DIAGNOSTIC, 28, -5.784561278149e-01, 3.488522213839e-04, 2.9963e-01, 2.9151e-03, + 2DIAGNOSTIC, 29, -5.789424648338e-01, 4.285444399319e-04, 3.0296e-01, 3.3259e-03, + 2DIAGNOSTIC, 30, -5.797111604880e-01, 4.772157351308e-04, 3.0625e-01, 3.2861e-03, + 2DIAGNOSTIC, 31, -5.826147282748e-01, 5.254034604953e-04, 3.1173e-01, 5.4839e-03, + 2DIAGNOSTIC, 32, -5.826512446528e-01, 5.218237155176e-04, 3.1465e-01, 2.9209e-03, + 2DIAGNOSTIC, 33, -5.830069535511e-01, 4.791895295234e-04, 3.1753e-01, 2.8780e-03, + 2DIAGNOSTIC, 34, -5.834027073254e-01, 4.071322949492e-04, 3.2074e-01, 3.2110e-03, + 2DIAGNOSTIC, 35, -5.836335226152e-01, 3.135387953706e-04, 3.2360e-01, 2.8551e-03, + 2DIAGNOSTIC, 36, -5.826949082601e-01, 2.071716662588e-04, 3.2642e-01, 2.8241e-03, + 2DIAGNOSTIC, 37, -5.828294830055e-01, 1.464682930907e-04, 3.2923e-01, 2.8141e-03, + 2DIAGNOSTIC, 38, -5.829809245340e-01, 9.689127627637e-05, 3.3205e-01, 2.8119e-03, + 2DIAGNOSTIC, 39, -5.832197233849e-01, 4.982285768354e-05, 3.3487e-01, 2.8260e-03, + 2DIAGNOSTIC, 40, -5.838757769663e-01, 1.715346736099e-05, 3.3806e-01, 3.1910e-03, + 2DIAGNOSTIC, 41, -5.844493561062e-01, 2.676770643778e-05, 3.4093e-01, 2.8648e-03, + 2DIAGNOSTIC, 42, -5.854521363743e-01, 4.564160568441e-05, 3.4531e-01, 4.3859e-03, + 2DIAGNOSTIC, 43, -5.863286246287e-01, 7.308893749600e-05, 3.4855e-01, 3.2361e-03, + 2DIAGNOSTIC, 44, -5.865345592374e-01, 9.882683650818e-05, 3.5136e-01, 2.8069e-03, + 2DIAGNOSTIC, 45, -5.871252147544e-01, 1.234733672462e-04, 3.5412e-01, 2.7649e-03, + 2DIAGNOSTIC, 46, -5.876078870037e-01, 1.302229345664e-04, 3.5651e-01, 2.3901e-03, + 2DIAGNOSTIC, 47, -5.873657843449e-01, 1.229818665579e-04, 3.5904e-01, 2.5280e-03, + 2DIAGNOSTIC, 48, -5.875242929934e-01, 1.076729309182e-04, 3.6155e-01, 2.5070e-03, + 2DIAGNOSTIC, 49, -5.877579686777e-01, 8.747832005607e-05, 3.6407e-01, 2.5189e-03, + 2DIAGNOSTIC, 50, -5.880518424954e-01, 6.906389073095e-05, 3.6676e-01, 2.6970e-03, + 2DIAGNOSTIC, 51, -5.880810069663e-01, 5.040137245288e-05, 3.6980e-01, 3.0389e-03, + 2DIAGNOSTIC, 52, -5.878570738832e-01, 3.504756022006e-05, 3.7249e-01, 2.6910e-03, + 2DIAGNOSTIC, 53, -5.888799365232e-01, 3.483130890570e-05, 3.7514e-01, 2.6500e-03, + 2DIAGNOSTIC, 54, -5.892244330561e-01, 3.588962120001e-05, 3.7778e-01, 2.6350e-03, + 2DIAGNOSTIC, 55, -5.899305893990e-01, 4.495279030380e-05, 3.8013e-01, 2.3501e-03, + 2DIAGNOSTIC, 56, -5.905909067579e-01, 5.959159962939e-05, 3.8262e-01, 2.4972e-03, + 2DIAGNOSTIC, 57, -5.910168789620e-01, 6.960771451554e-05, 3.8486e-01, 2.2321e-03, + 2DIAGNOSTIC, 58, -5.918732552381e-01, 8.113802050988e-05, 3.8741e-01, 2.5501e-03, + 2DIAGNOSTIC, 59, -5.924689647749e-01, 9.116693277702e-05, 3.9088e-01, 3.4759e-03, + 2DIAGNOSTIC, 60, -5.925253919120e-01, 9.499372486135e-05, 3.9314e-01, 2.2590e-03, + 2DIAGNOSTIC, 61, -5.928493564023e-01, 9.268364422049e-05, 3.9568e-01, 2.5408e-03, + 2DIAGNOSTIC, 62, -5.928256011003e-01, 7.942038563267e-05, 3.9795e-01, 2.2669e-03, + 2DIAGNOSTIC, 63, -5.931478280520e-01, 6.945935085981e-05, 4.0020e-01, 2.2531e-03, + 2DIAGNOSTIC, 64, -5.936702966786e-01, 5.965647496722e-05, 4.0242e-01, 2.2180e-03, + 2DIAGNOSTIC, 65, -5.938531184764e-01, 5.106357565521e-05, 4.0508e-01, 2.6550e-03, + 2DIAGNOSTIC, 66, -5.939497420974e-01, 4.355996039169e-05, 4.0756e-01, 2.4860e-03, + 2DIAGNOSTIC, 67, -5.941634330307e-01, 3.674350967255e-05, 4.1034e-01, 2.7759e-03, + 2DIAGNOSTIC, 68, -5.944956625646e-01, 3.506267639680e-05, 4.1254e-01, 2.1980e-03, + 2DIAGNOSTIC, 69, -5.945465824415e-01, 3.459193546058e-05, 4.1476e-01, 2.2280e-03, + 2DIAGNOSTIC, 70, -5.946853941840e-01, 3.218692034358e-05, 4.1702e-01, 2.2578e-03, + 2DIAGNOSTIC, 71, -5.952120496248e-01, 3.274358562079e-05, 4.1925e-01, 2.2309e-03, + 2DIAGNOSTIC, 72, -5.959881980058e-01, 3.516628591270e-05, 4.2215e-01, 2.8949e-03, + 2DIAGNOSTIC, 73, -5.960771952249e-01, 3.671953849336e-05, 4.2490e-01, 2.7552e-03, + 2DIAGNOSTIC, 74, -5.962014529611e-01, 3.908689993893e-05, 4.2839e-01, 3.4869e-03, + 2DIAGNOSTIC, 75, -5.967282241377e-01, 4.235848776893e-05, 4.3158e-01, 3.1900e-03, + 2DIAGNOSTIC, 76, -5.966651066011e-01, 4.154640752295e-05, 4.3477e-01, 3.1900e-03, + 2DIAGNOSTIC, 77, -5.999541584951e-01, 5.893909443167e-05, 4.3883e-01, 4.0622e-03, + 2DIAGNOSTIC, 78, -6.004509679665e-01, 7.489952471005e-05, 4.4225e-01, 3.4232e-03, + 2DIAGNOSTIC, 79, -6.005091347429e-01, 8.414340730786e-05, 4.4550e-01, 3.2461e-03, + 2DIAGNOSTIC, 80, -6.001812582647e-01, 8.418341688542e-05, 4.4836e-01, 2.8551e-03, + 2DIAGNOSTIC, 81, -6.000188695146e-01, 7.824068468525e-05, 4.5126e-01, 2.9011e-03, + 2DIAGNOSTIC, 82, -6.020828938035e-01, 8.153338769771e-05, 4.5409e-01, 2.8350e-03, + 2DIAGNOSTIC, 83, -6.036915397484e-01, 8.637258282762e-05, 4.5690e-01, 2.8059e-03, + 2DIAGNOSTIC, 84, -6.056738247512e-01, 9.507405424008e-05, 4.6026e-01, 3.3581e-03, + 2DIAGNOSTIC, 85, -6.084018828465e-01, 1.133551310521e-04, 4.6354e-01, 3.2840e-03, + 2DIAGNOSTIC, 86, -6.092039075209e-01, 1.237832425273e-04, 4.6601e-01, 2.4660e-03, + 2DIAGNOSTIC, 87, -6.122937079314e-01, 1.576036867389e-04, 4.6887e-01, 2.8629e-03, + 2DIAGNOSTIC, 88, -6.128071208650e-01, 1.805344002666e-04, 4.7330e-01, 4.4291e-03, + 2DIAGNOSTIC, 89, -6.136014891690e-01, 1.903098354365e-04, 4.7619e-01, 2.8911e-03, + 2DIAGNOSTIC, 90, -6.152674084919e-01, 1.888887257253e-04, 4.7870e-01, 2.5070e-03, + 2DIAGNOSTIC, 91, -6.155296336323e-01, 1.694178362905e-04, 4.8117e-01, 2.4700e-03, + 2DIAGNOSTIC, 92, -6.159141324739e-01, 1.469062945568e-04, 4.8366e-01, 2.4951e-03, + 2DIAGNOSTIC, 93, -6.161043277898e-01, 1.200318956771e-04, 4.8698e-01, 3.3219e-03, + 2DIAGNOSTIC, 94, -6.165921439507e-01, 9.472919365672e-05, 4.8932e-01, 2.3348e-03, + 2DIAGNOSTIC, 95, -6.167480428074e-01, 7.548441360932e-05, 4.9166e-01, 2.3448e-03, + 2DIAGNOSTIC, 96, -6.171148716649e-01, 5.489682907436e-05, 4.9491e-01, 3.2470e-03, + 2DIAGNOSTIC, 97, -6.172449424189e-01, 4.560296138193e-05, 4.9746e-01, 2.5539e-03, + 2DIAGNOSTIC, 98, -6.173592061805e-01, 3.521759381126e-05, 5.0008e-01, 2.6169e-03, + 2DIAGNOSTIC, 99, -6.171494582226e-01, 2.431860465284e-05, 5.0341e-01, 3.3271e-03, + 2DIAGNOSTIC, 100, -6.176651635978e-01, 2.188453868442e-05, 5.0596e-01, 2.5570e-03, + 2DIAGNOSTIC, 101, -6.178005151255e-01, 1.920342922408e-05, 5.0864e-01, 2.6739e-03, + 2DIAGNOSTIC, 102, -6.182302997566e-01, 1.859288222255e-05, 5.1157e-01, 2.9290e-03, + 2DIAGNOSTIC, 103, -6.179709787279e-01, 1.585583586517e-05, 5.1405e-01, 2.4850e-03, + 2DIAGNOSTIC, 104, -6.183188956909e-01, 1.562792340937e-05, 5.1677e-01, 2.7130e-03, + 2DIAGNOSTIC, 105, -6.179436237690e-01, 1.281652201235e-05, 5.1946e-01, 2.6948e-03, + 2DIAGNOSTIC, 106, -6.181718381858e-01, 1.154997469122e-05, 5.2212e-01, 2.6581e-03, + 2DIAGNOSTIC, 107, -6.182762303986e-01, 1.023200559377e-05, 5.2443e-01, 2.3119e-03, + 2DIAGNOSTIC, 108, -6.178990994432e-01, 6.849810446073e-06, 5.2677e-01, 2.3420e-03, + 2DIAGNOSTIC, 109, -6.185422956453e-01, 4.838725379238e-06, 5.2943e-01, 2.6550e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.715211712951e-01, 1.797693134862e+308, 5.9702e-01, 6.7590e-02, + 2DIAGNOSTIC, 2, -4.719048601489e-01, 1.797693134862e+308, 6.0980e-01, 1.2781e-02, + 2DIAGNOSTIC, 3, -4.725500316906e-01, 1.797693134862e+308, 6.2265e-01, 1.2855e-02, + 2DIAGNOSTIC, 4, -4.737312044640e-01, 1.797693134862e+308, 6.3563e-01, 1.2977e-02, + 2DIAGNOSTIC, 5, -4.750816301642e-01, 1.797693134862e+308, 6.5170e-01, 1.6068e-02, + 2DIAGNOSTIC, 6, -4.756755065340e-01, 1.797693134862e+308, 6.6509e-01, 1.3393e-02, + 2DIAGNOSTIC, 7, -4.772440939086e-01, 1.797693134862e+308, 6.7802e-01, 1.2927e-02, + 2DIAGNOSTIC, 8, -4.785945461099e-01, 1.797693134862e+308, 6.9073e-01, 1.2709e-02, + 2DIAGNOSTIC, 9, -4.820130355298e-01, 1.797693134862e+308, 7.0621e-01, 1.5484e-02, + 2DIAGNOSTIC, 10, -4.842284803935e-01, 1.645439883924e-03, 7.2959e-01, 2.3375e-02, + 2DIAGNOSTIC, 11, -4.842429205697e-01, 1.641735842074e-03, 7.4213e-01, 1.2543e-02, + 2DIAGNOSTIC, 12, -4.847936592539e-01, 1.541364242224e-03, 7.5308e-01, 1.0948e-02, + 2DIAGNOSTIC, 13, -4.851948914753e-01, 1.364309053719e-03, 7.6742e-01, 1.4341e-02, + 2DIAGNOSTIC, 14, -4.859837768527e-01, 1.169268031402e-03, 7.8462e-01, 1.7199e-02, + 2DIAGNOSTIC, 15, -4.861400138510e-01, 9.523251696647e-04, 7.9927e-01, 1.4651e-02, + 2DIAGNOSTIC, 16, -4.861870119828e-01, 7.005736157666e-04, 8.1397e-01, 1.4699e-02, + 2DIAGNOSTIC, 17, -4.862202903022e-01, 4.717732561626e-04, 8.2975e-01, 1.5782e-02, + 2DIAGNOSTIC, 18, -4.862968766858e-01, 2.695701280114e-04, 8.4169e-01, 1.1945e-02, + 2DIAGNOSTIC, 19, -4.867468426442e-01, 1.822574288352e-04, 8.5655e-01, 1.4858e-02, + 2DIAGNOSTIC, 20, -4.875029648145e-01, 1.746471513602e-04, 8.7625e-01, 1.9701e-02, + 2DIAGNOSTIC, 21, -4.875081870500e-01, 1.518049979806e-04, 8.8750e-01, 1.1248e-02, + 2DIAGNOSTIC, 22, -4.875921469213e-01, 1.344877140629e-04, 9.0028e-01, 1.2779e-02, + 2DIAGNOSTIC, 23, -4.876861008070e-01, 1.186141464569e-04, 9.1212e-01, 1.1839e-02, + 2DIAGNOSTIC, 24, -4.878245226992e-01, 1.154836542924e-04, 9.2416e-01, 1.2040e-02, + 2DIAGNOSTIC, 25, -4.880497503665e-01, 1.105122517130e-04, 9.3638e-01, 1.2225e-02, + 2DIAGNOSTIC, 26, -4.881353585734e-01, 9.868031532814e-05, 9.5082e-01, 1.4438e-02, + 2DIAGNOSTIC, 27, -4.880336967747e-01, 7.742496925731e-05, 9.6353e-01, 1.2709e-02, + 2DIAGNOSTIC, 28, -4.881207307327e-01, 5.398493633513e-05, 9.7523e-01, 1.1697e-02, + 2DIAGNOSTIC, 29, -4.888319817035e-01, 5.020881457610e-05, 9.8666e-01, 1.1428e-02, + 2DIAGNOSTIC, 30, -4.889340080689e-01, 5.840882367707e-05, 9.9972e-01, 1.3066e-02, + 2DIAGNOSTIC, 31, -4.889667882905e-01, 6.148517262328e-05, 1.0144e+00, 1.4648e-02, + 2DIAGNOSTIC, 32, -4.890489078567e-01, 6.197624890122e-05, 1.0245e+00, 1.0152e-02, + 2DIAGNOSTIC, 33, -4.888811538284e-01, 5.527357488742e-05, 1.0345e+00, 9.9611e-03, + 2DIAGNOSTIC, 34, -4.891165531186e-01, 5.003733406844e-05, 1.0493e+00, 1.4831e-02, + 2DIAGNOSTIC, 35, -4.896020755653e-01, 5.211925880238e-05, 1.0608e+00, 1.1534e-02, + 2DIAGNOSTIC, 36, -4.896192427156e-01, 5.090043768256e-05, 1.0711e+00, 1.0277e-02, + 2DIAGNOSTIC, 37, -4.897659706730e-01, 4.595888280874e-05, 1.0812e+00, 1.0077e-02, + 2DIAGNOSTIC, 38, -4.899215760698e-01, 4.052901871669e-05, 1.0957e+00, 1.4470e-02, + 2DIAGNOSTIC, 39, -4.901211947933e-01, 4.515910576257e-05, 1.1136e+00, 1.7898e-02, + 2DIAGNOSTIC, 40, -4.901721561710e-01, 4.737516585183e-05, 1.1260e+00, 1.2428e-02, + 2DIAGNOSTIC, 41, -4.901863095741e-01, 4.571347167900e-05, 1.1408e+00, 1.4792e-02, + 2DIAGNOSTIC, 42, -4.901653710071e-01, 4.091781980932e-05, 1.1524e+00, 1.1652e-02, + 2DIAGNOSTIC, 43, -4.900692078078e-01, 2.887788671618e-05, 1.1633e+00, 1.0874e-02, + 2DIAGNOSTIC, 44, -4.902298790288e-01, 1.980265489675e-05, 1.1750e+00, 1.1714e-02, + 2DIAGNOSTIC, 45, -4.901382046198e-01, 1.438299852737e-05, 1.1857e+00, 1.0643e-02, + 2DIAGNOSTIC, 46, -4.900908665657e-01, 7.554935423676e-06, 1.1961e+00, 1.0469e-02, + 2DIAGNOSTIC, 47, -4.902152791302e-01, 3.767956581378e-06, 1.2079e+00, 1.1711e-02, + 2DIAGNOSTIC, 48, -4.903597868436e-01, 3.387783102261e-06, 1.2214e+00, 1.3557e-02, + 2DIAGNOSTIC, 49, -4.904190802932e-01, 5.769281884366e-06, 1.2335e+00, 1.2088e-02, + 2DIAGNOSTIC, 50, -4.903643796187e-01, 7.532108936247e-06, 1.2456e+00, 1.2096e-02, + 2DIAGNOSTIC, 51, -4.903060566087e-01, 8.142712396030e-06, 1.2579e+00, 1.2268e-02, + 2DIAGNOSTIC, 52, -4.903173068851e-01, 7.930498579604e-06, 1.2933e+00, 3.5403e-02, + 2DIAGNOSTIC, 53, -4.903173057518e-01, 5.836912510503e-06, 1.3037e+00, 1.0437e-02, + 2DIAGNOSTIC, 54, -4.903173070197e-01, 5.079130349916e-06, 1.3142e+00, 1.0528e-02, + 2DIAGNOSTIC, 55, -4.903173091628e-01, 3.011631120774e-06, 1.3247e+00, 1.0451e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.124712108174e-01, 1.797693134862e+308, 1.5007e+00, 1.7606e-01, + Elapsed time (stage 0): 1.5301e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.752911494309e-01, 1.797693134862e+308, 3.2630e-02, 3.2630e-02, + 2DIAGNOSTIC, 2, -9.776531480746e-01, 1.797693134862e+308, 3.4139e-02, 1.5092e-03, + 2DIAGNOSTIC, 3, -9.810240522222e-01, 1.797693134862e+308, 3.5418e-02, 1.2789e-03, + 2DIAGNOSTIC, 4, -9.869503414657e-01, 1.797693134862e+308, 3.6649e-02, 1.2310e-03, + 2DIAGNOSTIC, 5, -9.952438720532e-01, 1.797693134862e+308, 3.7903e-02, 1.2541e-03, + 2DIAGNOSTIC, 6, -1.005041854590e+00, 1.797693134862e+308, 3.9369e-02, 1.4660e-03, + 2DIAGNOSTIC, 7, -1.015842357890e+00, 1.797693134862e+308, 4.1398e-02, 2.0292e-03, + 2DIAGNOSTIC, 8, -1.015691192440e+00, 1.797693134862e+308, 4.2735e-02, 1.3371e-03, + 2DIAGNOSTIC, 9, -1.016714003034e+00, 1.797693134862e+308, 4.3860e-02, 1.1251e-03, + 2DIAGNOSTIC, 10, -1.016734241333e+00, 3.276518596949e-03, 4.5209e-02, 1.3490e-03, + 2DIAGNOSTIC, 11, -1.017622872470e+00, 2.673416307712e-03, 4.6535e-02, 1.3251e-03, + 2DIAGNOSTIC, 12, -1.021432564771e+00, 2.075805332541e-03, 4.8048e-02, 1.5140e-03, + 2DIAGNOSTIC, 13, -1.023348441346e+00, 1.498720431811e-03, 4.9825e-02, 1.7769e-03, + 2DIAGNOSTIC, 14, -1.024734277341e+00, 1.018354455172e-03, 5.1149e-02, 1.3239e-03, + 2DIAGNOSTIC, 15, -1.026120439009e+00, 6.905358171304e-04, 5.2689e-02, 1.5399e-03, + 2DIAGNOSTIC, 16, -1.027554495758e+00, 5.337323999775e-04, 5.4020e-02, 1.3309e-03, + 2DIAGNOSTIC, 17, -1.029895224038e+00, 5.634744285551e-04, 5.5538e-02, 1.5178e-03, + 2DIAGNOSTIC, 18, -1.033344913787e+00, 5.880001924623e-04, 5.7094e-02, 1.5562e-03, + 2DIAGNOSTIC, 19, -1.031097090016e+00, 5.374285667032e-04, 5.8430e-02, 1.3359e-03, + 2DIAGNOSTIC, 20, -1.041635565581e+00, 5.924014886805e-04, 6.0208e-02, 1.7781e-03, + 2DIAGNOSTIC, 21, -1.046907693467e+00, 6.640675096816e-04, 6.1774e-02, 1.5659e-03, + 2DIAGNOSTIC, 22, -1.049577766960e+00, 7.478323559341e-04, 6.3283e-02, 1.5092e-03, + 2DIAGNOSTIC, 23, -1.052466602718e+00, 8.138106712672e-04, 6.4625e-02, 1.3418e-03, + 2DIAGNOSTIC, 24, -1.059700694442e+00, 8.983611785301e-04, 6.6157e-02, 1.5321e-03, + 2DIAGNOSTIC, 25, -1.064166272893e+00, 9.537132031088e-04, 6.8115e-02, 1.9581e-03, + 2DIAGNOSTIC, 26, -1.062671671557e+00, 9.125337390937e-04, 6.9679e-02, 1.5640e-03, + 2DIAGNOSTIC, 27, -1.063964922158e+00, 8.280019766453e-04, 7.1023e-02, 1.3440e-03, + 2DIAGNOSTIC, 28, -1.065770012238e+00, 7.258694494405e-04, 7.2335e-02, 1.3120e-03, + 2DIAGNOSTIC, 29, -1.066696549671e+00, 5.462068204288e-04, 7.3662e-02, 1.3270e-03, + 2DIAGNOSTIC, 30, -1.067620649904e+00, 4.316345154221e-04, 7.4990e-02, 1.3280e-03, + 2DIAGNOSTIC, 31, -1.069185045846e+00, 3.456897169924e-04, 7.7125e-02, 2.1350e-03, + 2DIAGNOSTIC, 32, -1.069621640339e+00, 2.597556885410e-04, 7.8647e-02, 1.5221e-03, + 2DIAGNOSTIC, 33, -1.070858364040e+00, 1.874816470570e-04, 8.0187e-02, 1.5399e-03, + 2DIAGNOSTIC, 34, -1.075614135571e+00, 1.976061211801e-04, 8.1508e-02, 1.3208e-03, + 2DIAGNOSTIC, 35, -1.082550443758e+00, 2.774702214806e-04, 8.3111e-02, 1.6031e-03, + 2DIAGNOSTIC, 36, -1.084768269296e+00, 3.307623392727e-04, 8.5043e-02, 1.9319e-03, + 2DIAGNOSTIC, 37, -1.086011332571e+00, 3.688523632207e-04, 8.6525e-02, 1.4820e-03, + 2DIAGNOSTIC, 38, -1.086972862667e+00, 3.902803493937e-04, 8.8026e-02, 1.5011e-03, + 2DIAGNOSTIC, 39, -1.087051713580e+00, 3.799167601776e-04, 8.9734e-02, 1.7080e-03, + 2DIAGNOSTIC, 40, -1.087423292511e+00, 3.419110787616e-04, 9.1206e-02, 1.4720e-03, + 2DIAGNOSTIC, 41, -1.088899090119e+00, 2.936441036649e-04, 9.2593e-02, 1.3871e-03, + 2DIAGNOSTIC, 42, -1.091946779757e+00, 2.428385022483e-04, 9.4126e-02, 1.5321e-03, + 2DIAGNOSTIC, 43, -1.092700412234e+00, 1.833475223427e-04, 9.5435e-02, 1.3092e-03, + 2DIAGNOSTIC, 44, -1.094108622185e+00, 1.465666928427e-04, 9.6829e-02, 1.3940e-03, + 2DIAGNOSTIC, 45, -1.094496323375e+00, 1.415724199255e-04, 9.8834e-02, 2.0049e-03, + 2DIAGNOSTIC, 46, -1.094632959697e+00, 1.369690933278e-04, 1.0070e-01, 1.8651e-03, + 2DIAGNOSTIC, 47, -1.094676785705e+00, 1.266290650033e-04, 1.0203e-01, 1.3299e-03, + 2DIAGNOSTIC, 48, -1.094852870774e+00, 1.111218692178e-04, 1.0374e-01, 1.7121e-03, + 2DIAGNOSTIC, 49, -1.094985534487e+00, 8.701506165965e-05, 1.0502e-01, 1.2789e-03, + 2DIAGNOSTIC, 50, -1.095089179505e+00, 5.817455137637e-05, 1.0671e-01, 1.6921e-03, + 2DIAGNOSTIC, 51, -1.095177535392e+00, 3.297299547237e-05, 1.0803e-01, 1.3208e-03, + 2DIAGNOSTIC, 52, -1.095343254324e+00, 2.235266942286e-05, 1.0980e-01, 1.7700e-03, + 2DIAGNOSTIC, 53, -1.095379006349e+00, 1.388170400791e-05, 1.1191e-01, 2.1110e-03, + 2DIAGNOSTIC, 54, -1.095416350561e+00, 1.162668101236e-05, 1.1365e-01, 1.7350e-03, + 2DIAGNOSTIC, 55, -1.095544384172e+00, 1.091838356760e-05, 1.1596e-01, 2.3100e-03, + 2DIAGNOSTIC, 56, -1.096313745870e+00, 1.358693865083e-05, 1.1849e-01, 2.5289e-03, + 2DIAGNOSTIC, 57, -1.096320253470e+00, 1.503021665009e-05, 1.1986e-01, 1.3721e-03, + 2DIAGNOSTIC, 58, -1.096354432665e+00, 1.604763063659e-05, 1.2123e-01, 1.3690e-03, + 2DIAGNOSTIC, 59, -1.096420434896e+00, 1.649663989318e-05, 1.2268e-01, 1.4532e-03, + 2DIAGNOSTIC, 60, -1.096484755025e+00, 1.611994281957e-05, 1.2429e-01, 1.6069e-03, + 2DIAGNOSTIC, 61, -1.096492439835e+00, 1.460321075218e-05, 1.2626e-01, 1.9751e-03, + 2DIAGNOSTIC, 62, -1.095773620667e+00, 9.393844446027e-06, 1.2802e-01, 1.7571e-03, + 2DIAGNOSTIC, 63, -1.095773655651e+00, 3.798651455746e-06, 1.2955e-01, 1.5268e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.889945348906e-01, 1.797693134862e+308, 1.7724e-01, 4.7697e-02, + 2DIAGNOSTIC, 2, -6.895811709922e-01, 1.797693134862e+308, 1.8047e-01, 3.2220e-03, + 2DIAGNOSTIC, 3, -6.917006906759e-01, 1.797693134862e+308, 1.8330e-01, 2.8381e-03, + 2DIAGNOSTIC, 4, -6.949506346649e-01, 1.797693134862e+308, 1.8564e-01, 2.3320e-03, + 2DIAGNOSTIC, 5, -6.990102753074e-01, 1.797693134862e+308, 1.8794e-01, 2.3079e-03, + 2DIAGNOSTIC, 6, -7.048109925128e-01, 1.797693134862e+308, 1.9038e-01, 2.4400e-03, + 2DIAGNOSTIC, 7, -7.139527551659e-01, 1.797693134862e+308, 1.9314e-01, 2.7521e-03, + 2DIAGNOSTIC, 8, -7.206650525107e-01, 1.797693134862e+308, 1.9814e-01, 4.9989e-03, + 2DIAGNOSTIC, 9, -7.205884087609e-01, 1.797693134862e+308, 2.0041e-01, 2.2721e-03, + 2DIAGNOSTIC, 10, -7.208648746740e-01, 3.598601901896e-03, 2.0285e-01, 2.4440e-03, + 2DIAGNOSTIC, 11, -7.212611226711e-01, 3.178552207387e-03, 2.0534e-01, 2.4838e-03, + 2DIAGNOSTIC, 12, -7.219579268188e-01, 2.582873967548e-03, 2.0816e-01, 2.8269e-03, + 2DIAGNOSTIC, 13, -7.230820040785e-01, 1.944516658293e-03, 2.1119e-01, 3.0301e-03, + 2DIAGNOSTIC, 14, -7.247945485544e-01, 1.366409198982e-03, 2.1426e-01, 3.0670e-03, + 2DIAGNOSTIC, 15, -7.264546681873e-01, 8.955147361144e-04, 2.1690e-01, 2.6360e-03, + 2DIAGNOSTIC, 16, -7.275607039393e-01, 5.701555867231e-04, 2.2082e-01, 3.9239e-03, + 2DIAGNOSTIC, 17, -7.279039005280e-01, 4.496188355424e-04, 2.2337e-01, 2.5539e-03, + 2DIAGNOSTIC, 18, -7.287337568557e-01, 4.685865751225e-04, 2.2588e-01, 2.5101e-03, + 2DIAGNOSTIC, 19, -7.292807038099e-01, 4.514525922431e-04, 2.2837e-01, 2.4900e-03, + 2DIAGNOSTIC, 20, -7.300753564085e-01, 4.151102055679e-04, 2.3192e-01, 3.5498e-03, + 2DIAGNOSTIC, 21, -7.304785779025e-01, 3.587786837869e-04, 2.3496e-01, 3.0379e-03, + 2DIAGNOSTIC, 22, -7.307710530780e-01, 2.923380592661e-04, 2.3811e-01, 3.1531e-03, + 2DIAGNOSTIC, 23, -7.313833815526e-01, 2.341692686552e-04, 2.4156e-01, 3.4430e-03, + 2DIAGNOSTIC, 24, -7.317384190539e-01, 1.923895570168e-04, 2.4413e-01, 2.5771e-03, + 2DIAGNOSTIC, 25, -7.322709892888e-01, 1.703176835475e-04, 2.4669e-01, 2.5520e-03, + 2DIAGNOSTIC, 26, -7.334246168987e-01, 1.683884028768e-04, 2.4956e-01, 2.8760e-03, + 2DIAGNOSTIC, 27, -7.358015502759e-01, 1.901428834146e-04, 2.5374e-01, 4.1821e-03, + 2DIAGNOSTIC, 28, -7.359630675847e-01, 2.056588580819e-04, 2.5640e-01, 2.6588e-03, + 2DIAGNOSTIC, 29, -7.362813388468e-01, 2.128065683726e-04, 2.5915e-01, 2.7468e-03, + 2DIAGNOSTIC, 30, -7.366054636346e-01, 2.144037366788e-04, 2.6191e-01, 2.7630e-03, + 2DIAGNOSTIC, 31, -7.369148973589e-01, 2.044036339846e-04, 2.6460e-01, 2.6879e-03, + 2DIAGNOSTIC, 32, -7.371979764177e-01, 1.822511534980e-04, 2.6747e-01, 2.8701e-03, + 2DIAGNOSTIC, 33, -7.376926698438e-01, 1.575123469022e-04, 2.7095e-01, 3.4800e-03, + 2DIAGNOSTIC, 34, -7.380404260174e-01, 1.278103069121e-04, 2.7378e-01, 2.8241e-03, + 2DIAGNOSTIC, 35, -7.383401643747e-01, 9.702930379215e-05, 2.7771e-01, 3.9341e-03, + 2DIAGNOSTIC, 36, -7.384775188898e-01, 7.222581174533e-05, 2.8063e-01, 2.9209e-03, + 2DIAGNOSTIC, 37, -7.386113433833e-01, 6.864591900665e-05, 2.8366e-01, 3.0279e-03, + 2DIAGNOSTIC, 38, -7.386800383417e-01, 6.109766138527e-05, 2.8828e-01, 4.6258e-03, + 2DIAGNOSTIC, 39, -7.386623854222e-01, 5.114601895574e-05, 2.9110e-01, 2.8169e-03, + 2DIAGNOSTIC, 40, -7.387052561393e-01, 4.049102962894e-05, 2.9383e-01, 2.7320e-03, + 2DIAGNOSTIC, 41, -7.387472595541e-01, 2.992881745677e-05, 2.9660e-01, 2.7702e-03, + 2DIAGNOSTIC, 42, -7.387984169027e-01, 2.012665908497e-05, 2.9969e-01, 3.0830e-03, + 2DIAGNOSTIC, 43, -7.387614680737e-01, 1.304986986835e-05, 3.0347e-01, 3.7820e-03, + 2DIAGNOSTIC, 44, -7.387943123120e-01, 8.485251225033e-06, 3.0625e-01, 2.7800e-03, + 2DIAGNOSTIC, 45, -7.388154506903e-01, 6.150971695863e-06, 3.0905e-01, 2.8040e-03, + 2DIAGNOSTIC, 46, -7.388521176024e-01, 4.834547919861e-06, 3.1219e-01, 3.1381e-03, + 2DIAGNOSTIC, 47, -7.388592612210e-01, 4.329446299547e-06, 3.1572e-01, 3.5269e-03, + 2DIAGNOSTIC, 48, -7.388597816142e-01, 4.081253164909e-06, 3.2471e-01, 8.9881e-03, + 2DIAGNOSTIC, 49, -7.388597815998e-01, 3.378475606573e-06, 3.3272e-01, 8.0171e-03, + 2DIAGNOSTIC, 50, -7.388597815998e-01, 2.765077134370e-06, 3.3564e-01, 2.9221e-03, + 2DIAGNOSTIC, 51, -7.388597815998e-01, 2.278206909269e-06, 3.3873e-01, 3.0890e-03, + 2DIAGNOSTIC, 52, -7.388597815998e-01, 2.047805477717e-06, 3.4175e-01, 3.0189e-03, + 2DIAGNOSTIC, 53, -7.388597815998e-01, 1.416480230620e-06, 3.4481e-01, 3.0591e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.759725594543e-01, 1.797693134862e+308, 4.1091e-01, 6.6095e-02, + 2DIAGNOSTIC, 2, -5.763170456595e-01, 1.797693134862e+308, 4.2425e-01, 1.3348e-02, + 2DIAGNOSTIC, 3, -5.768146554633e-01, 1.797693134862e+308, 4.3799e-01, 1.3734e-02, + 2DIAGNOSTIC, 4, -5.774737461645e-01, 1.797693134862e+308, 4.5117e-01, 1.3185e-02, + 2DIAGNOSTIC, 5, -5.784419696053e-01, 1.797693134862e+308, 4.6364e-01, 1.2463e-02, + 2DIAGNOSTIC, 6, -5.799475629399e-01, 1.797693134862e+308, 4.7613e-01, 1.2491e-02, + 2DIAGNOSTIC, 7, -5.811704023563e-01, 1.797693134862e+308, 4.9379e-01, 1.7660e-02, + 2DIAGNOSTIC, 8, -5.813869133729e-01, 1.797693134862e+308, 5.0607e-01, 1.2283e-02, + 2DIAGNOSTIC, 9, -5.832473239503e-01, 1.797693134862e+308, 5.1998e-01, 1.3906e-02, + 2DIAGNOSTIC, 10, -5.845057318149e-01, 9.728346368770e-04, 5.3264e-01, 1.2667e-02, + 2DIAGNOSTIC, 11, -5.847472648409e-01, 9.285721272580e-04, 5.4723e-01, 1.4585e-02, + 2DIAGNOSTIC, 12, -5.851594372834e-01, 8.404810089337e-04, 5.6354e-01, 1.6308e-02, + 2DIAGNOSTIC, 13, -5.852611708266e-01, 7.135112636973e-04, 5.7655e-01, 1.3014e-02, + 2DIAGNOSTIC, 14, -5.853960235542e-01, 5.672672946855e-04, 5.9084e-01, 1.4291e-02, + 2DIAGNOSTIC, 15, -5.854726751908e-01, 4.215211605298e-04, 6.0369e-01, 1.2845e-02, + 2DIAGNOSTIC, 16, -5.855849105694e-01, 3.047242929082e-04, 6.1665e-01, 1.2960e-02, + 2DIAGNOSTIC, 17, -5.861121680662e-01, 2.249808735214e-04, 6.3295e-01, 1.6302e-02, + 2DIAGNOSTIC, 18, -5.864210474437e-01, 1.464312642805e-04, 6.4672e-01, 1.3770e-02, + 2DIAGNOSTIC, 19, -5.866345665413e-01, 1.152990547969e-04, 6.6651e-01, 1.9792e-02, + 2DIAGNOSTIC, 20, -5.866839921347e-01, 1.087353687563e-04, 6.8002e-01, 1.3511e-02, + 2DIAGNOSTIC, 21, -5.868361375713e-01, 1.018160999091e-04, 6.9385e-01, 1.3827e-02, + 2DIAGNOSTIC, 22, -5.869164150243e-01, 9.684072072296e-05, 7.0813e-01, 1.4279e-02, + 2DIAGNOSTIC, 23, -5.869634028643e-01, 8.634393256129e-05, 7.2209e-01, 1.3964e-02, + 2DIAGNOSTIC, 24, -5.870341098518e-01, 7.303817588990e-05, 7.3635e-01, 1.4253e-02, + 2DIAGNOSTIC, 25, -5.871782974526e-01, 5.848709267001e-05, 7.5017e-01, 1.3826e-02, + 2DIAGNOSTIC, 26, -5.871449764671e-01, 4.090864208531e-05, 7.6385e-01, 1.3683e-02, + 2DIAGNOSTIC, 27, -5.875471265037e-01, 3.759311272584e-05, 7.7969e-01, 1.5832e-02, + 2DIAGNOSTIC, 28, -5.876659402168e-01, 3.827418923399e-05, 7.9427e-01, 1.4580e-02, + 2DIAGNOSTIC, 29, -5.878309981440e-01, 4.176594633868e-05, 8.0705e-01, 1.2788e-02, + 2DIAGNOSTIC, 30, -5.879544599478e-01, 4.395137088000e-05, 8.2316e-01, 1.6105e-02, + 2DIAGNOSTIC, 31, -5.879812143906e-01, 4.471680028417e-05, 8.3627e-01, 1.3114e-02, + 2DIAGNOSTIC, 32, -5.880090009252e-01, 4.290971672537e-05, 8.5249e-01, 1.6214e-02, + 2DIAGNOSTIC, 33, -5.880310536640e-01, 3.820497816164e-05, 8.6504e-01, 1.2556e-02, + 2DIAGNOSTIC, 34, -5.880472924667e-01, 3.146533226925e-05, 8.7959e-01, 1.4545e-02, + 2DIAGNOSTIC, 35, -5.880621512189e-01, 2.449380181678e-05, 8.9447e-01, 1.4884e-02, + 2DIAGNOSTIC, 36, -5.880677929555e-01, 1.518399115898e-05, 9.0985e-01, 1.5378e-02, + 2DIAGNOSTIC, 37, -5.880732489208e-01, 1.037557176434e-05, 9.2461e-01, 1.4755e-02, + 2DIAGNOSTIC, 38, -5.880783336706e-01, 6.459035419595e-06, 9.3713e-01, 1.2521e-02, + 2DIAGNOSTIC, 39, -5.880828580110e-01, 4.281838379239e-06, 9.5002e-01, 1.2891e-02, + 2DIAGNOSTIC, 40, -5.880852545407e-01, 3.407471723133e-06, 9.6349e-01, 1.3476e-02, + 2DIAGNOSTIC, 41, -5.880867916485e-01, 2.657830340376e-06, 9.7942e-01, 1.5930e-02, + 2DIAGNOSTIC, 42, -5.880905365472e-01, 2.126184381553e-06, 9.9849e-01, 1.9062e-02, + 2DIAGNOSTIC, 43, -5.880901146152e-01, 1.729057744711e-06, 1.0126e+00, 1.4138e-02, + 2DIAGNOSTIC, 44, -5.880920581794e-01, 1.453235865687e-06, 1.0262e+00, 1.3550e-02, + 2DIAGNOSTIC, 45, -5.880936678421e-01, 1.297033497650e-06, 1.0460e+00, 1.9813e-02, + 2DIAGNOSTIC, 46, -5.880941118605e-01, 1.154649367840e-06, 1.0865e+00, 4.0486e-02, + 2DIAGNOSTIC, 47, -5.880941118597e-01, 1.029807143324e-06, 1.1226e+00, 3.6130e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.874631796866e-01, 1.797693134862e+308, 1.3225e+00, 1.9987e-01, + Elapsed time (stage 1): 1.3499e+00 + + +Total elapsed time: 2.8811e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:14:40 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 37 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 66 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 88.17% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 88.17% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[19593 6653 8211 10917 505 1152 8813 0 0 290 14146 2386 + 994 3910 1342 1710 3854 1284 704 0 256 0 393 0 + 0 0 0 0 0 0 0 0 0 0 0 0 + 0] +[208524 79639 76215 34356 8985 9341 4750 10339 8234 9157 + 6084 2329 7844 6653 5789 1248 3897 1568 0 650 + 380 191 0 385 475 531 346 294 324 0 + 192 0 0 0 0 0 0] +[ 0 9222 10451 7701 0 0 0 7187 269 7582 0 0 + 0 18976 0 0 5770 0 0 7031 1703 475 10859 0 + 0 217 0 0 0 0 16949 4412 0 0 12499 0 + 474] +[ 0 159495 156401 152246 0 0 0 14013 0 0 + 936 528 0 653 0 253 0 1078 0 722 + 10543 6503 743 285 633 7472 875 2418 911 753 + 540 552 198 3694 0 0 4342] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:24:11 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:24:16 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:01 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:01 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:01 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:12 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:16 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC003 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:29:15 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:29:40 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:32:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:32:41 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:33:59 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:33:59 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5597d452dd20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [76.2585, 114.949, -133.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5597d43a4730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fef21df2010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5597d4531020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 61.5673, -112.413] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5597d45370c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fef1e733010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5597d4547840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [76.2585, 114.949, -133.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5597d4533890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fef19a5f010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5597d454b3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 61.5673, -112.413] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5597d453a130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fef163a0010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.129218364120e-01, 1.797693134862e+308, 2.3593e-01, 2.3593e-01, + 2DIAGNOSTIC, 2, -5.144782080050e-01, 1.797693134862e+308, 2.3757e-01, 1.6360e-03, + 2DIAGNOSTIC, 3, -5.151383338229e-01, 1.797693134862e+308, 2.3898e-01, 1.4150e-03, + 2DIAGNOSTIC, 4, -5.136041880371e-01, 1.797693134862e+308, 2.4038e-01, 1.3928e-03, + 2DIAGNOSTIC, 5, -5.138978891814e-01, 1.797693134862e+308, 2.4156e-01, 1.1830e-03, + 2DIAGNOSTIC, 6, -5.141049266963e-01, 1.797693134862e+308, 2.4274e-01, 1.1849e-03, + 2DIAGNOSTIC, 7, -5.151879143052e-01, 1.797693134862e+308, 2.4398e-01, 1.2410e-03, + 2DIAGNOSTIC, 8, -5.170928810987e-01, 1.797693134862e+308, 2.4520e-01, 1.2190e-03, + 2DIAGNOSTIC, 9, -5.193223073982e-01, 1.797693134862e+308, 2.4647e-01, 1.2650e-03, + 2DIAGNOSTIC, 10, -5.243364811757e-01, 9.831256272770e-04, 2.4797e-01, 1.5059e-03, + 2DIAGNOSTIC, 11, -5.367072138367e-01, 1.796369975047e-03, 2.4946e-01, 1.4832e-03, + 2DIAGNOSTIC, 12, -5.494222720014e-01, 2.939521187668e-03, 2.5092e-01, 1.4572e-03, + 2DIAGNOSTIC, 13, -5.736584068122e-01, 4.653080826202e-03, 2.5259e-01, 1.6758e-03, + 2DIAGNOSTIC, 14, -5.784635860948e-01, 5.788107663026e-03, 2.5405e-01, 1.4591e-03, + 2DIAGNOSTIC, 15, -5.816441639253e-01, 6.364148029817e-03, 2.5618e-01, 2.1300e-03, + 2DIAGNOSTIC, 16, -5.845058529767e-01, 6.385451764674e-03, 2.5832e-01, 2.1431e-03, + 2DIAGNOSTIC, 17, -5.844155750048e-01, 5.842251915190e-03, 2.5979e-01, 1.4648e-03, + 2DIAGNOSTIC, 18, -5.850252394467e-01, 4.894965490932e-03, 2.6121e-01, 1.4231e-03, + 2DIAGNOSTIC, 19, -5.880148996838e-01, 3.747829368221e-03, 2.6289e-01, 1.6761e-03, + 2DIAGNOSTIC, 20, -5.884987646171e-01, 2.521619560949e-03, 2.6436e-01, 1.4760e-03, + 2DIAGNOSTIC, 21, -5.891501233284e-01, 1.508281890006e-03, 2.6604e-01, 1.6720e-03, + 2DIAGNOSTIC, 22, -5.919872053176e-01, 8.057810970473e-04, 2.6750e-01, 1.4651e-03, + 2DIAGNOSTIC, 23, -6.020635382241e-01, 8.589130941480e-04, 2.6896e-01, 1.4620e-03, + 2DIAGNOSTIC, 24, -6.214880550051e-01, 1.335518177456e-03, 2.7089e-01, 1.9240e-03, + 2DIAGNOSTIC, 25, -6.305773133427e-01, 1.884076842629e-03, 2.7323e-01, 2.3389e-03, + 2DIAGNOSTIC, 26, -6.315624049464e-01, 2.287218448460e-03, 2.7493e-01, 1.7061e-03, + 2DIAGNOSTIC, 27, -6.342687335623e-01, 2.497292334289e-03, 2.7659e-01, 1.6570e-03, + 2DIAGNOSTIC, 28, -6.353117838030e-01, 2.481342965127e-03, 2.7829e-01, 1.7061e-03, + 2DIAGNOSTIC, 29, -6.356373539229e-01, 2.284632073409e-03, 2.7977e-01, 1.4749e-03, + 2DIAGNOSTIC, 30, -6.335660885609e-01, 1.861296291825e-03, 2.8146e-01, 1.6892e-03, + 2DIAGNOSTIC, 31, -6.367037102037e-01, 1.359178979737e-03, 2.8311e-01, 1.6539e-03, + 2DIAGNOSTIC, 32, -6.364759290948e-01, 8.028620940656e-04, 2.8543e-01, 2.3210e-03, + 2DIAGNOSTIC, 33, -6.369593198413e-01, 3.589793393049e-04, 2.8695e-01, 1.5180e-03, + 2DIAGNOSTIC, 34, -6.374769403720e-01, 1.957347455231e-04, 2.8863e-01, 1.6820e-03, + 2DIAGNOSTIC, 35, -6.373409014640e-01, 1.500670949190e-04, 2.9004e-01, 1.4069e-03, + 2DIAGNOSTIC, 36, -6.348987576708e-01, 7.210728500347e-05, 2.9147e-01, 1.4269e-03, + 2DIAGNOSTIC, 37, -6.354220240265e-01, 3.462721565099e-05, 2.9321e-01, 1.7438e-03, + 2DIAGNOSTIC, 38, -6.350729626003e-01, 4.474387306039e-06, 2.9467e-01, 1.4601e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.885689773305e-01, 1.797693134862e+308, 5.3199e-01, 2.3732e-01, + 2DIAGNOSTIC, 2, -4.881208611829e-01, 1.797693134862e+308, 5.3474e-01, 2.7490e-03, + 2DIAGNOSTIC, 3, -4.902107688514e-01, 1.797693134862e+308, 5.3728e-01, 2.5399e-03, + 2DIAGNOSTIC, 4, -4.929269381903e-01, 1.797693134862e+308, 5.3979e-01, 2.5129e-03, + 2DIAGNOSTIC, 5, -4.945458805604e-01, 1.797693134862e+308, 5.4218e-01, 2.3890e-03, + 2DIAGNOSTIC, 6, -5.022999882591e-01, 1.797693134862e+308, 5.4476e-01, 2.5830e-03, + 2DIAGNOSTIC, 7, -5.050235241236e-01, 1.797693134862e+308, 5.4699e-01, 2.2249e-03, + 2DIAGNOSTIC, 8, -5.105024691287e-01, 1.797693134862e+308, 5.4984e-01, 2.8529e-03, + 2DIAGNOSTIC, 9, -5.155303826153e-01, 1.797693134862e+308, 5.5221e-01, 2.3711e-03, + 2DIAGNOSTIC, 10, -5.159432299304e-01, 4.120928513070e-03, 5.5456e-01, 2.3439e-03, + 2DIAGNOSTIC, 11, -5.199045039107e-01, 4.018005783703e-03, 5.5683e-01, 2.2759e-03, + 2DIAGNOSTIC, 12, -5.218686403415e-01, 3.638175689870e-03, 5.5972e-01, 2.8920e-03, + 2DIAGNOSTIC, 13, -5.230753518275e-01, 3.131066570136e-03, 5.6295e-01, 3.2260e-03, + 2DIAGNOSTIC, 14, -5.235879712805e-01, 2.546067479877e-03, 5.6683e-01, 3.8791e-03, + 2DIAGNOSTIC, 15, -5.237794612391e-01, 1.873243298097e-03, 5.6920e-01, 2.3730e-03, + 2DIAGNOSTIC, 16, -5.234899815822e-01, 1.376967915905e-03, 5.7153e-01, 2.3310e-03, + 2DIAGNOSTIC, 17, -5.240135759215e-01, 9.167369425952e-04, 5.7385e-01, 2.3129e-03, + 2DIAGNOSTIC, 18, -5.244148356029e-01, 6.028021892684e-04, 5.7607e-01, 2.2280e-03, + 2DIAGNOSTIC, 19, -5.247539080013e-01, 4.254902543434e-04, 5.7836e-01, 2.2860e-03, + 2DIAGNOSTIC, 20, -5.256053449780e-01, 2.601448017661e-04, 5.8057e-01, 2.2061e-03, + 2DIAGNOSTIC, 21, -5.261883110198e-01, 2.056843908268e-04, 5.8282e-01, 2.2571e-03, + 2DIAGNOSTIC, 22, -5.269967445279e-01, 2.061479648098e-04, 5.8535e-01, 2.5270e-03, + 2DIAGNOSTIC, 23, -5.289858447048e-01, 2.635449427985e-04, 5.8817e-01, 2.8150e-03, + 2DIAGNOSTIC, 24, -5.307859780916e-01, 3.435408734680e-04, 5.9025e-01, 2.0881e-03, + 2DIAGNOSTIC, 25, -5.312179646191e-01, 3.983521713277e-04, 5.9231e-01, 2.0590e-03, + 2DIAGNOSTIC, 26, -5.325903812594e-01, 4.348684616263e-04, 5.9440e-01, 2.0859e-03, + 2DIAGNOSTIC, 27, -5.365781628434e-01, 5.191397403934e-04, 5.9667e-01, 2.2731e-03, + 2DIAGNOSTIC, 28, -5.424476179714e-01, 6.686919317436e-04, 5.9996e-01, 3.2880e-03, + 2DIAGNOSTIC, 29, -5.462328482461e-01, 8.195950846301e-04, 6.0237e-01, 2.4130e-03, + 2DIAGNOSTIC, 30, -5.534653068102e-01, 1.030206347029e-03, 6.0473e-01, 2.3532e-03, + 2DIAGNOSTIC, 31, -5.548323105027e-01, 1.162068082993e-03, 6.0813e-01, 3.4080e-03, + 2DIAGNOSTIC, 32, -5.573332528775e-01, 1.231280460448e-03, 6.1050e-01, 2.3620e-03, + 2DIAGNOSTIC, 33, -5.627820745640e-01, 1.300140771539e-03, 6.1279e-01, 2.2960e-03, + 2DIAGNOSTIC, 34, -5.670613910982e-01, 1.335818599434e-03, 6.1605e-01, 3.2630e-03, + 2DIAGNOSTIC, 35, -5.730533672217e-01, 1.340709679346e-03, 6.1977e-01, 3.7110e-03, + 2DIAGNOSTIC, 36, -5.799598236877e-01, 1.340595479229e-03, 6.2333e-01, 3.5639e-03, + 2DIAGNOSTIC, 37, -5.810320571837e-01, 1.284892894373e-03, 6.2567e-01, 2.3401e-03, + 2DIAGNOSTIC, 38, -5.847412611729e-01, 1.245776903878e-03, 6.2908e-01, 3.4080e-03, + 2DIAGNOSTIC, 39, -5.880782916799e-01, 1.184573772946e-03, 6.3147e-01, 2.3949e-03, + 2DIAGNOSTIC, 40, -5.909687171168e-01, 1.147589224850e-03, 6.3392e-01, 2.4471e-03, + 2DIAGNOSTIC, 41, -5.945301946485e-01, 1.066375034950e-03, 6.3634e-01, 2.4161e-03, + 2DIAGNOSTIC, 42, -5.969826175083e-01, 9.493978085308e-04, 6.3966e-01, 3.3221e-03, + 2DIAGNOSTIC, 43, -5.982502865966e-01, 8.306199308532e-04, 6.4199e-01, 2.3320e-03, + 2DIAGNOSTIC, 44, -6.003626220414e-01, 7.140191212692e-04, 6.4498e-01, 2.9919e-03, + 2DIAGNOSTIC, 45, -6.035131556560e-01, 6.394828379788e-04, 6.4738e-01, 2.4030e-03, + 2DIAGNOSTIC, 46, -6.356730694739e-01, 9.510733103689e-04, 6.5009e-01, 2.7030e-03, + 2DIAGNOSTIC, 47, -6.970647965934e-01, 1.835348549783e-03, 6.5343e-01, 3.3450e-03, + 2DIAGNOSTIC, 48, -7.130937048260e-01, 2.694696914501e-03, 6.5606e-01, 2.6259e-03, + 2DIAGNOSTIC, 49, -7.592094279859e-01, 3.772590172938e-03, 6.5858e-01, 2.5251e-03, + 2DIAGNOSTIC, 50, -7.693861746605e-01, 4.560734351117e-03, 6.6075e-01, 2.1651e-03, + 2DIAGNOSTIC, 51, -7.726582336440e-01, 4.936915960327e-03, 6.6383e-01, 3.0820e-03, + 2DIAGNOSTIC, 52, -7.737932009181e-01, 4.853821269572e-03, 6.6809e-01, 4.2639e-03, + 2DIAGNOSTIC, 53, -7.738198903045e-01, 4.324606071112e-03, 6.7075e-01, 2.6569e-03, + 2DIAGNOSTIC, 54, -7.738283424747e-01, 3.433367485910e-03, 6.7309e-01, 2.3360e-03, + 2DIAGNOSTIC, 55, -7.740120880507e-01, 2.285460299308e-03, 6.7574e-01, 2.6541e-03, + 2DIAGNOSTIC, 56, -7.741192555610e-01, 1.247770405834e-03, 6.7841e-01, 2.6681e-03, + 2DIAGNOSTIC, 57, -7.740329180824e-01, 6.640731623864e-04, 6.8076e-01, 2.3491e-03, + 2DIAGNOSTIC, 58, -7.739712133788e-01, 1.670408995507e-04, 6.8338e-01, 2.6231e-03, + 2DIAGNOSTIC, 59, -7.738628792737e-01, 4.930625197003e-05, 6.8594e-01, 2.5561e-03, + 2DIAGNOSTIC, 60, -7.734038470986e-01, 8.872536436409e-06, 6.8820e-01, 2.2669e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.416062555593e-01, 1.797693134862e+308, 9.4902e-01, 2.6081e-01, + 2DIAGNOSTIC, 2, -6.430550036888e-01, 1.797693134862e+308, 9.6234e-01, 1.3325e-02, + 2DIAGNOSTIC, 3, -6.452316927815e-01, 1.797693134862e+308, 9.7582e-01, 1.3477e-02, + 2DIAGNOSTIC, 4, -6.486295223682e-01, 1.797693134862e+308, 9.8893e-01, 1.3109e-02, + 2DIAGNOSTIC, 5, -6.519079145660e-01, 1.797693134862e+308, 1.0021e+00, 1.3156e-02, + 2DIAGNOSTIC, 6, -6.532456161731e-01, 1.797693134862e+308, 1.0171e+00, 1.4992e-02, + 2DIAGNOSTIC, 7, -6.539861671828e-01, 1.797693134862e+308, 1.0320e+00, 1.4916e-02, + 2DIAGNOSTIC, 8, -6.540914970222e-01, 1.797693134862e+308, 1.0467e+00, 1.4734e-02, + 2DIAGNOSTIC, 9, -6.542640292986e-01, 1.797693134862e+308, 1.0625e+00, 1.5741e-02, + 2DIAGNOSTIC, 10, -6.547822280690e-01, 1.398293278377e-03, 1.0753e+00, 1.2870e-02, + 2DIAGNOSTIC, 11, -6.549062324693e-01, 1.007464750735e-03, 1.0982e+00, 2.2825e-02, + 2DIAGNOSTIC, 12, -6.549368708098e-01, 6.466974767329e-04, 1.1151e+00, 1.6908e-02, + 2DIAGNOSTIC, 13, -6.549445550124e-01, 3.558809646012e-04, 1.1298e+00, 1.4771e-02, + 2DIAGNOSTIC, 14, -6.549354999997e-01, 1.781967496233e-04, 1.1427e+00, 1.2838e-02, + 2DIAGNOSTIC, 15, -6.549141192013e-01, 1.018939428818e-04, 1.1572e+00, 1.4544e-02, + 2DIAGNOSTIC, 16, -6.549253481723e-01, 6.222008934324e-05, 1.1721e+00, 1.4920e-02, + 2DIAGNOSTIC, 17, -6.549184350460e-01, 4.064893168279e-05, 1.1871e+00, 1.4915e-02, + 2DIAGNOSTIC, 18, -6.548962116451e-01, 1.999062134980e-05, 1.2017e+00, 1.4621e-02, + 2DIAGNOSTIC, 19, -6.548913865089e-01, 3.399533619872e-06, 1.2188e+00, 1.7107e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.539261527400e-01, 1.797693134862e+308, 1.6298e+00, 4.1105e-01, + 2DIAGNOSTIC, 2, -5.541606682492e-01, 1.797693134862e+308, 1.7129e+00, 8.3088e-02, + 2DIAGNOSTIC, 3, -5.544822611132e-01, 1.797693134862e+308, 1.7960e+00, 8.3045e-02, + 2DIAGNOSTIC, 4, -5.554148862067e-01, 1.797693134862e+308, 1.8916e+00, 9.5634e-02, + 2DIAGNOSTIC, 5, -5.557637511407e-01, 1.797693134862e+308, 1.9999e+00, 1.0831e-01, + 2DIAGNOSTIC, 6, -5.560223268625e-01, 1.797693134862e+308, 2.0828e+00, 8.2864e-02, + 2DIAGNOSTIC, 7, -5.563904478635e-01, 1.797693134862e+308, 2.1655e+00, 8.2721e-02, + 2DIAGNOSTIC, 8, -5.576897837177e-01, 1.797693134862e+308, 2.2778e+00, 1.1233e-01, + 2DIAGNOSTIC, 9, -5.581491842893e-01, 1.797693134862e+308, 2.3690e+00, 9.1133e-02, + 2DIAGNOSTIC, 10, -5.584123877405e-01, 5.511639796816e-04, 2.4460e+00, 7.7005e-02, + 2DIAGNOSTIC, 11, -5.584912105560e-01, 4.972669944089e-04, 2.5349e+00, 8.8966e-02, + 2DIAGNOSTIC, 12, -5.585646036916e-01, 4.213465809485e-04, 2.6229e+00, 8.7956e-02, + 2DIAGNOSTIC, 13, -5.586168968321e-01, 3.324578168920e-04, 2.7929e+00, 1.7000e-01, + 2DIAGNOSTIC, 14, -5.586274250321e-01, 2.602281941887e-04, 2.8749e+00, 8.1968e-02, + 2DIAGNOSTIC, 15, -5.586469387710e-01, 1.871001358868e-04, 2.9561e+00, 8.1281e-02, + 2DIAGNOSTIC, 16, -5.586646406049e-01, 1.153241243744e-04, 3.0383e+00, 8.2199e-02, + 2DIAGNOSTIC, 17, -5.586993398216e-01, 5.279457684218e-05, 3.1353e+00, 9.6958e-02, + 2DIAGNOSTIC, 18, -5.587121567249e-01, 2.941775899788e-05, 3.2301e+00, 9.4837e-02, + 2DIAGNOSTIC, 19, -5.587101218089e-01, 1.807542567683e-05, 3.3115e+00, 8.1325e-02, + 2DIAGNOSTIC, 20, -5.587145024340e-01, 1.316460132474e-05, 3.4100e+00, 9.8541e-02, + 2DIAGNOSTIC, 21, -5.587184966016e-01, 9.613232230206e-06, 3.5058e+00, 9.5842e-02, + 2DIAGNOSTIC, 22, -5.587152806257e-01, 7.213128310493e-06, 3.6306e+00, 1.2471e-01, + 2DIAGNOSTIC, 23, -5.587143103270e-01, 5.622558310651e-06, 3.7302e+00, 9.9632e-02, + 2DIAGNOSTIC, 24, -5.587145328366e-01, 4.001211822549e-06, 3.8259e+00, 9.5730e-02, + 2DIAGNOSTIC, 25, -5.587132639186e-01, 2.630155264950e-06, 3.9107e+00, 8.4826e-02, + 2DIAGNOSTIC, 26, -5.587091193355e-01, 1.484978300555e-06, 3.9951e+00, 8.4403e-02, + 2DIAGNOSTIC, 27, -5.587067596707e-01, 1.007539701912e-06, 4.0890e+00, 9.3814e-02, + Elapsed time (stage 0): 4.2312e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.987090592326e-01, 1.797693134862e+308, 2.0583e-01, 2.0583e-01, + 2DIAGNOSTIC, 2, -9.009915896696e-01, 1.797693134862e+308, 2.0715e-01, 1.3199e-03, + 2DIAGNOSTIC, 3, -9.034634506575e-01, 1.797693134862e+308, 2.0847e-01, 1.3211e-03, + 2DIAGNOSTIC, 4, -9.095694475631e-01, 1.797693134862e+308, 2.0982e-01, 1.3490e-03, + 2DIAGNOSTIC, 5, -9.201756503458e-01, 1.797693134862e+308, 2.1116e-01, 1.3418e-03, + 2DIAGNOSTIC, 6, -9.373820246701e-01, 1.797693134862e+308, 2.1246e-01, 1.2941e-03, + 2DIAGNOSTIC, 7, -9.542534296477e-01, 1.797693134862e+308, 2.1381e-01, 1.3530e-03, + 2DIAGNOSTIC, 8, -9.761223266024e-01, 1.797693134862e+308, 2.1536e-01, 1.5559e-03, + 2DIAGNOSTIC, 9, -9.869377992548e-01, 1.797693134862e+308, 2.1738e-01, 2.0130e-03, + 2DIAGNOSTIC, 10, -9.950401130663e-01, 7.458811939313e-03, 2.1891e-01, 1.5290e-03, + 2DIAGNOSTIC, 11, -9.988592902315e-01, 7.150846028013e-03, 2.2041e-01, 1.5061e-03, + 2DIAGNOSTIC, 12, -1.017824372389e+00, 6.776183266247e-03, 2.2218e-01, 1.7710e-03, + 2DIAGNOSTIC, 13, -1.028450229373e+00, 6.135415638173e-03, 2.2516e-01, 2.9740e-03, + 2DIAGNOSTIC, 14, -1.028565945017e+00, 5.167181967966e-03, 2.2676e-01, 1.6069e-03, + 2DIAGNOSTIC, 15, -1.028688078464e+00, 4.083661758755e-03, 2.2852e-01, 1.7519e-03, + 2DIAGNOSTIC, 16, -1.030983733371e+00, 3.127178886083e-03, 2.3002e-01, 1.5030e-03, + 2DIAGNOSTIC, 17, -1.032406240090e+00, 2.303508103349e-03, 2.3177e-01, 1.7490e-03, + 2DIAGNOSTIC, 18, -1.033184931268e+00, 1.724049620787e-03, 2.3346e-01, 1.6949e-03, + 2DIAGNOSTIC, 19, -1.033830346606e+00, 1.226475058399e-03, 2.3494e-01, 1.4811e-03, + 2DIAGNOSTIC, 20, -1.034346699892e+00, 7.966809157401e-04, 2.3643e-01, 1.4851e-03, + 2DIAGNOSTIC, 21, -1.037226297491e+00, 4.217600701231e-04, 2.3807e-01, 1.6351e-03, + 2DIAGNOSTIC, 22, -1.038538992437e+00, 3.035056558077e-04, 2.3956e-01, 1.4920e-03, + 2DIAGNOSTIC, 23, -1.040912016196e+00, 3.303583737288e-04, 2.4149e-01, 1.9350e-03, + 2DIAGNOSTIC, 24, -1.041289780175e+00, 3.302995959650e-04, 2.4320e-01, 1.7121e-03, + 2DIAGNOSTIC, 25, -1.042755418187e+00, 3.173471440038e-04, 2.4534e-01, 2.1338e-03, + 2DIAGNOSTIC, 26, -1.044468051993e+00, 3.189223730419e-04, 2.4696e-01, 1.6201e-03, + 2DIAGNOSTIC, 27, -1.046687913789e+00, 3.281364744659e-04, 2.4865e-01, 1.6961e-03, + 2DIAGNOSTIC, 28, -1.047601999569e+00, 3.227483243456e-04, 2.5017e-01, 1.5171e-03, + 2DIAGNOSTIC, 29, -1.047256114209e+00, 2.908454891370e-04, 2.5170e-01, 1.5309e-03, + 2DIAGNOSTIC, 30, -1.044835701914e+00, 2.158097791869e-04, 2.5401e-01, 2.3122e-03, + 2DIAGNOSTIC, 31, -1.045061751311e+00, 1.541848400266e-04, 2.5550e-01, 1.4830e-03, + 2DIAGNOSTIC, 32, -1.045433248829e+00, 9.581800523321e-05, 2.5697e-01, 1.4708e-03, + 2DIAGNOSTIC, 33, -1.045763087618e+00, 5.497104798197e-05, 2.5844e-01, 1.4741e-03, + 2DIAGNOSTIC, 34, -1.046048006501e+00, 1.720409962053e-05, 2.6011e-01, 1.6651e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.996277288445e-01, 1.797693134862e+308, 4.7291e-01, 2.1281e-01, + 2DIAGNOSTIC, 2, -8.993741741865e-01, 1.797693134862e+308, 4.7560e-01, 2.6810e-03, + 2DIAGNOSTIC, 3, -9.008022914993e-01, 1.797693134862e+308, 4.7825e-01, 2.6591e-03, + 2DIAGNOSTIC, 4, -9.022800491088e-01, 1.797693134862e+308, 4.8053e-01, 2.2781e-03, + 2DIAGNOSTIC, 5, -9.038276575675e-01, 1.797693134862e+308, 4.8300e-01, 2.4700e-03, + 2DIAGNOSTIC, 6, -9.055117939290e-01, 1.797693134862e+308, 4.8640e-01, 3.3932e-03, + 2DIAGNOSTIC, 7, -9.056328489767e-01, 1.797693134862e+308, 4.8854e-01, 2.1429e-03, + 2DIAGNOSTIC, 8, -9.058894628853e-01, 1.797693134862e+308, 4.9129e-01, 2.7478e-03, + 2DIAGNOSTIC, 9, -9.059880439293e-01, 1.797693134862e+308, 4.9355e-01, 2.2659e-03, + 2DIAGNOSTIC, 10, -9.058666202706e-01, 5.515497012707e-04, 4.9582e-01, 2.2640e-03, + 2DIAGNOSTIC, 11, -9.057829794329e-01, 4.151469026322e-04, 4.9824e-01, 2.4259e-03, + 2DIAGNOSTIC, 12, -9.059410422847e-01, 2.619400714738e-04, 5.0084e-01, 2.6000e-03, + 2DIAGNOSTIC, 13, -9.062828901577e-01, 1.515292360702e-04, 5.0341e-01, 2.5721e-03, + 2DIAGNOSTIC, 14, -9.058058059806e-01, 6.510611901359e-05, 5.0597e-01, 2.5570e-03, + 2DIAGNOSTIC, 15, -9.055353545421e-01, 1.082440172971e-05, 5.0829e-01, 2.3232e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.503860886110e-01, 1.797693134862e+308, 7.4815e-01, 2.3985e-01, + 2DIAGNOSTIC, 2, -7.522609019560e-01, 1.797693134862e+308, 7.6290e-01, 1.4750e-02, + 2DIAGNOSTIC, 3, -7.548114749225e-01, 1.797693134862e+308, 7.7720e-01, 1.4306e-02, + 2DIAGNOSTIC, 4, -7.579373143802e-01, 1.797693134862e+308, 7.9186e-01, 1.4656e-02, + 2DIAGNOSTIC, 5, -7.611736237195e-01, 1.797693134862e+308, 8.0627e-01, 1.4414e-02, + 2DIAGNOSTIC, 6, -7.636099469261e-01, 1.797693134862e+308, 8.2276e-01, 1.6492e-02, + 2DIAGNOSTIC, 7, -7.655924585125e-01, 1.797693134862e+308, 8.4145e-01, 1.8687e-02, + 2DIAGNOSTIC, 8, -7.658553011532e-01, 1.797693134862e+308, 8.5590e-01, 1.4452e-02, + 2DIAGNOSTIC, 9, -7.663825571802e-01, 1.797693134862e+308, 8.7255e-01, 1.6644e-02, + 2DIAGNOSTIC, 10, -7.668058559930e-01, 1.516273125676e-03, 8.8746e-01, 1.4914e-02, + 2DIAGNOSTIC, 11, -7.670390107526e-01, 1.146930765854e-03, 9.0770e-01, 2.0237e-02, + 2DIAGNOSTIC, 12, -7.672535243401e-01, 8.014356632058e-04, 9.2918e-01, 2.1484e-02, + 2DIAGNOSTIC, 13, -7.672550888117e-01, 5.099900299390e-04, 9.4590e-01, 1.6715e-02, + 2DIAGNOSTIC, 14, -7.673011909186e-01, 2.978634395250e-04, 9.6290e-01, 1.6999e-02, + 2DIAGNOSTIC, 15, -7.672964537992e-01, 1.662647760301e-04, 9.7797e-01, 1.5076e-02, + 2DIAGNOSTIC, 16, -7.672794991632e-01, 9.130575996855e-05, 9.9258e-01, 1.4611e-02, + 2DIAGNOSTIC, 17, -7.673268320757e-01, 6.150609490406e-05, 1.0072e+00, 1.4629e-02, + 2DIAGNOSTIC, 18, -7.674043393590e-01, 3.638271706507e-05, 1.0235e+00, 1.6247e-02, + 2DIAGNOSTIC, 19, -7.673892406789e-01, 2.057535760225e-05, 1.0375e+00, 1.4045e-02, + 2DIAGNOSTIC, 20, -7.674246526962e-01, 1.309746027490e-05, 1.0521e+00, 1.4608e-02, + 2DIAGNOSTIC, 21, -7.674790416748e-01, 1.026517168792e-05, 1.0688e+00, 1.6646e-02, + 2DIAGNOSTIC, 22, -7.675647409421e-01, 1.191678967080e-05, 1.0835e+00, 1.4792e-02, + 2DIAGNOSTIC, 23, -7.676590255707e-01, 1.392510384050e-05, 1.1009e+00, 1.7371e-02, + 2DIAGNOSTIC, 24, -7.677166589840e-01, 1.619340786733e-05, 1.1181e+00, 1.7208e-02, + 2DIAGNOSTIC, 25, -7.677757144421e-01, 1.772819090969e-05, 1.1388e+00, 2.0719e-02, + 2DIAGNOSTIC, 26, -7.677767336526e-01, 1.734823033429e-05, 1.1555e+00, 1.6662e-02, + 2DIAGNOSTIC, 27, -7.677516648027e-01, 1.575436981158e-05, 1.1720e+00, 1.6476e-02, + 2DIAGNOSTIC, 28, -7.677309668367e-01, 1.367171555931e-05, 1.1913e+00, 1.9288e-02, + 2DIAGNOSTIC, 29, -7.677396998173e-01, 1.046566297185e-05, 1.2068e+00, 1.5564e-02, + 2DIAGNOSTIC, 30, -7.677147385670e-01, 6.704311298594e-06, 1.2223e+00, 1.5490e-02, + 2DIAGNOSTIC, 31, -7.676940473174e-01, 3.055755438824e-06, 1.2378e+00, 1.5513e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.465765004385e-01, 1.797693134862e+308, 1.6626e+00, 4.2473e-01, + 2DIAGNOSTIC, 2, -6.474718795260e-01, 1.797693134862e+308, 1.7498e+00, 8.7207e-02, + 2DIAGNOSTIC, 3, -6.482551320312e-01, 1.797693134862e+308, 1.8371e+00, 8.7319e-02, + 2DIAGNOSTIC, 4, -6.487957417994e-01, 1.797693134862e+308, 1.9218e+00, 8.4666e-02, + 2DIAGNOSTIC, 5, -6.490770949835e-01, 1.797693134862e+308, 2.0061e+00, 8.4334e-02, + 2DIAGNOSTIC, 6, -6.494170454714e-01, 1.797693134862e+308, 2.1032e+00, 9.7090e-02, + 2DIAGNOSTIC, 7, -6.497753807033e-01, 1.797693134862e+308, 2.2248e+00, 1.2163e-01, + 2DIAGNOSTIC, 8, -6.498987724017e-01, 1.797693134862e+308, 2.3904e+00, 1.6556e-01, + 2DIAGNOSTIC, 9, -6.499206545677e-01, 1.797693134862e+308, 2.4860e+00, 9.5621e-02, + 2DIAGNOSTIC, 10, -6.499587829593e-01, 3.180471031940e-04, 2.5947e+00, 1.0867e-01, + 2DIAGNOSTIC, 11, -6.499970522349e-01, 2.117409728700e-04, 2.6878e+00, 9.3172e-02, + 2DIAGNOSTIC, 12, -6.500197699154e-01, 1.372441346474e-04, 2.7962e+00, 1.0833e-01, + 2DIAGNOSTIC, 13, -6.500361193224e-01, 8.867603092404e-05, 2.8938e+00, 9.7597e-02, + 2DIAGNOSTIC, 14, -6.500522074354e-01, 5.667254214604e-05, 2.9788e+00, 8.5054e-02, + 2DIAGNOSTIC, 15, -6.500557717818e-01, 3.216789353229e-05, 3.0772e+00, 9.8430e-02, + 2DIAGNOSTIC, 16, -6.500596081164e-01, 1.713456813227e-05, 3.1756e+00, 9.8339e-02, + 2DIAGNOSTIC, 17, -6.500620782476e-01, 1.168813155735e-05, 3.2797e+00, 1.0414e-01, + 2DIAGNOSTIC, 18, -6.500563479471e-01, 8.803200571811e-06, 3.3712e+00, 9.1449e-02, + 2DIAGNOSTIC, 19, -6.500595027279e-01, 6.138982406034e-06, 3.4871e+00, 1.1594e-01, + 2DIAGNOSTIC, 20, -6.500583693691e-01, 4.118404324661e-06, 3.6517e+00, 1.6458e-01, + 2DIAGNOSTIC, 21, -6.500567059983e-01, 2.811534466608e-06, 3.7602e+00, 1.0856e-01, + 2DIAGNOSTIC, 22, -6.500550392942e-01, 1.918000202238e-06, 3.8675e+00, 1.0726e-01, + 2DIAGNOSTIC, 23, -6.500534543899e-01, 1.333882275752e-06, 3.9759e+00, 1.0844e-01, + 2DIAGNOSTIC, 24, -6.500498946264e-01, 1.030766746853e-06, 4.0745e+00, 9.8605e-02, + Elapsed time (stage 1): 4.2017e+00 + + +Total elapsed time: 8.4362e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:34:11 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:34:12 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55f7e0e0f4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 61.5673, -112.413] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f7e0e14fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc447b59010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55f7e0e10850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 61.5673, -112.413] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f7e0e0df30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc44449a010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55f7e0e27b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 61.5673, -112.413] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f7e0e14550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc440ddb010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55f7e0e2cd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 61.5673, -112.413] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f7e0e2ac00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc43d71c010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55f7e0e2ef70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 61.5673, -112.413] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f7e0e2d3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc43a05d010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55f7e0e2f540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 61.5673, -112.413] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f7e0e2f4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc43699e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.100996339835e-01, 1.797693134862e+308, 2.1577e-01, 2.1577e-01, + 2DIAGNOSTIC, 2, -7.128051932528e-01, 1.797693134862e+308, 2.1803e-01, 2.2631e-03, + 2DIAGNOSTIC, 3, -7.165415571405e-01, 1.797693134862e+308, 2.2040e-01, 2.3630e-03, + 2DIAGNOSTIC, 4, -7.211530706053e-01, 1.797693134862e+308, 2.2276e-01, 2.3642e-03, + 2DIAGNOSTIC, 5, -7.260672954093e-01, 1.797693134862e+308, 2.2502e-01, 2.2609e-03, + 2DIAGNOSTIC, 6, -7.289077536764e-01, 1.797693134862e+308, 2.2706e-01, 2.0380e-03, + 2DIAGNOSTIC, 7, -7.301979928795e-01, 1.797693134862e+308, 2.2934e-01, 2.2821e-03, + 2DIAGNOSTIC, 8, -7.310048052589e-01, 1.797693134862e+308, 2.3272e-01, 3.3810e-03, + 2DIAGNOSTIC, 9, -7.312015507256e-01, 1.797693134862e+308, 2.3467e-01, 1.9460e-03, + 2DIAGNOSTIC, 10, -7.317867529902e-01, 2.068295042305e-03, 2.3716e-01, 2.4891e-03, + 2DIAGNOSTIC, 11, -7.316396476862e-01, 1.490595826974e-03, 2.3932e-01, 2.1648e-03, + 2DIAGNOSTIC, 12, -7.315810297346e-01, 9.634372329823e-04, 2.4176e-01, 2.4381e-03, + 2DIAGNOSTIC, 13, -7.316149972461e-01, 5.438225851791e-04, 2.4421e-01, 2.4459e-03, + 2DIAGNOSTIC, 14, -7.316450054527e-01, 2.624730327731e-04, 2.4638e-01, 2.1739e-03, + 2DIAGNOSTIC, 15, -7.315367475184e-01, 1.188233327399e-04, 2.4894e-01, 2.5630e-03, + 2DIAGNOSTIC, 16, -7.313232080952e-01, 4.627298166252e-05, 2.5178e-01, 2.8362e-03, + 2DIAGNOSTIC, 17, -7.313373335945e-01, 8.121597035657e-06, 2.5443e-01, 2.6541e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.244719688550e-01, 1.797693134862e+308, 4.8135e-01, 2.2691e-01, + 2DIAGNOSTIC, 2, -6.253774654944e-01, 1.797693134862e+308, 4.9527e-01, 1.3923e-02, + 2DIAGNOSTIC, 3, -6.260461672146e-01, 1.797693134862e+308, 5.1258e-01, 1.7316e-02, + 2DIAGNOSTIC, 4, -6.263619553033e-01, 1.797693134862e+308, 5.2629e-01, 1.3706e-02, + 2DIAGNOSTIC, 5, -6.265888378752e-01, 1.797693134862e+308, 5.4553e-01, 1.9243e-02, + 2DIAGNOSTIC, 6, -6.266239571353e-01, 1.797693134862e+308, 5.6083e-01, 1.5293e-02, + 2DIAGNOSTIC, 7, -6.266250063407e-01, 1.797693134862e+308, 5.7649e-01, 1.5660e-02, + 2DIAGNOSTIC, 8, -6.266097533883e-01, 1.797693134862e+308, 5.9300e-01, 1.6514e-02, + 2DIAGNOSTIC, 9, -6.265881376926e-01, 1.797693134862e+308, 6.0825e-01, 1.5248e-02, + 2DIAGNOSTIC, 10, -6.265780478522e-01, 1.705711678770e-04, 6.2197e-01, 1.3725e-02, + 2DIAGNOSTIC, 11, -6.265705112313e-01, 7.825029167048e-05, 6.3542e-01, 1.3443e-02, + 2DIAGNOSTIC, 12, -6.265812755784e-01, 2.876503390582e-05, 6.4908e-01, 1.3660e-02, + 2DIAGNOSTIC, 13, -6.265675740574e-01, 7.195349811320e-06, 6.6504e-01, 1.5959e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.265112764116e-01, 1.797693134862e+308, 1.0308e+00, 3.6572e-01, + 2DIAGNOSTIC, 2, -5.269954933944e-01, 1.797693134862e+308, 1.1246e+00, 9.3794e-02, + 2DIAGNOSTIC, 3, -5.272292661923e-01, 1.797693134862e+308, 1.2169e+00, 9.2299e-02, + 2DIAGNOSTIC, 4, -5.272995068374e-01, 1.797693134862e+308, 1.3227e+00, 1.0585e-01, + 2DIAGNOSTIC, 5, -5.273220192617e-01, 1.797693134862e+308, 1.4166e+00, 9.3890e-02, + 2DIAGNOSTIC, 6, -5.273464866063e-01, 1.797693134862e+308, 1.5218e+00, 1.0517e-01, + 2DIAGNOSTIC, 7, -5.274629739929e-01, 1.797693134862e+308, 1.6903e+00, 1.6858e-01, + 2DIAGNOSTIC, 8, -5.274682934079e-01, 1.797693134862e+308, 1.7975e+00, 1.0718e-01, + 2DIAGNOSTIC, 9, -5.274729459692e-01, 1.797693134862e+308, 1.9024e+00, 1.0492e-01, + 2DIAGNOSTIC, 10, -5.274730316822e-01, 9.088361439220e-05, 2.0100e+00, 1.0754e-01, + 2DIAGNOSTIC, 11, -5.274729245889e-01, 4.697863987115e-05, 2.1171e+00, 1.0709e-01, + 2DIAGNOSTIC, 12, -5.274734126613e-01, 2.787583197540e-05, 2.2249e+00, 1.0780e-01, + 2DIAGNOSTIC, 13, -5.274680809717e-01, 1.882775071523e-05, 2.3334e+00, 1.0857e-01, + 2DIAGNOSTIC, 14, -5.274684136814e-01, 1.236368433248e-05, 2.4432e+00, 1.0976e-01, + 2DIAGNOSTIC, 15, -5.274693651906e-01, 6.708919045917e-06, 2.5381e+00, 9.4866e-02, + 2DIAGNOSTIC, 16, -5.274701664414e-01, 2.080102901467e-06, 2.6576e+00, 1.1954e-01, + 2DIAGNOSTIC, 17, -5.274715490147e-01, 1.721535262837e-06, 2.7602e+00, 1.0260e-01, + 2DIAGNOSTIC, 18, -5.274707098340e-01, 1.548978188264e-06, 2.8553e+00, 9.5057e-02, + 2DIAGNOSTIC, 19, -5.274697022667e-01, 1.520190767254e-06, 2.9467e+00, 9.1440e-02, + 2DIAGNOSTIC, 20, -5.274689898906e-01, 1.490203717189e-06, 3.0408e+00, 9.4071e-02, + 2DIAGNOSTIC, 21, -5.274687528947e-01, 1.461033840376e-06, 3.1462e+00, 1.0543e-01, + 2DIAGNOSTIC, 22, -5.274697840325e-01, 1.479983330437e-06, 3.2526e+00, 1.0643e-01, + 2DIAGNOSTIC, 23, -5.274664436217e-01, 1.290549238774e-06, 3.3390e+00, 8.6356e-02, + 2DIAGNOSTIC, 24, -5.274637296723e-01, 1.075089568030e-06, 3.4525e+00, 1.1355e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.576019245104e-01, 1.797693134862e+308, 4.6079e+00, 1.1553e+00, + 2DIAGNOSTIC, 2, -4.577870446321e-01, 1.797693134862e+308, 5.4194e+00, 8.1155e-01, + 2DIAGNOSTIC, 3, -4.578031197994e-01, 1.797693134862e+308, 6.2431e+00, 8.2368e-01, + 2DIAGNOSTIC, 4, -4.578014993162e-01, 1.797693134862e+308, 6.8562e+00, 6.1309e-01, + 2DIAGNOSTIC, 5, -4.578013625213e-01, 1.797693134862e+308, 7.5405e+00, 6.8431e-01, + 2DIAGNOSTIC, 6, -4.578009571928e-01, 1.797693134862e+308, 8.1548e+00, 6.1430e-01, + 2DIAGNOSTIC, 7, -4.578002898897e-01, 1.797693134862e+308, 8.9422e+00, 7.8740e-01, + 2DIAGNOSTIC, 8, -4.577997814967e-01, 1.797693134862e+308, 9.7197e+00, 7.7751e-01, + 2DIAGNOSTIC, 9, -4.577996540421e-01, 1.797693134862e+308, 1.0322e+01, 6.0256e-01, + 2DIAGNOSTIC, 10, -4.577996714637e-01, 1.595723913743e-05, 1.0827e+01, 5.0445e-01, + 2DIAGNOSTIC, 11, -4.577995464964e-01, 3.306520362359e-06, 1.1340e+01, 5.1371e-01, + 2DIAGNOSTIC, 12, -4.577995681414e-01, 2.281665256024e-06, 1.1868e+01, 5.2773e-01, + 2DIAGNOSTIC, 13, -4.577994503167e-01, 2.212188883646e-06, 1.2487e+01, 6.1869e-01, + 2DIAGNOSTIC, 14, -4.577994825481e-01, 2.103255825142e-06, 1.3107e+01, 6.1978e-01, + 2DIAGNOSTIC, 15, -4.577993603385e-01, 2.013302010412e-06, 1.3646e+01, 5.3920e-01, + 2DIAGNOSTIC, 16, -4.577992603037e-01, 1.925410665918e-06, 1.4159e+01, 5.1332e-01, + 2DIAGNOSTIC, 17, -4.577993519173e-01, 1.833190326518e-06, 1.4698e+01, 5.3868e-01, + 2DIAGNOSTIC, 18, -4.577991973083e-01, 1.731786860096e-06, 1.5281e+01, 5.8293e-01, + 2DIAGNOSTIC, 19, -4.577986449719e-01, 1.622218275037e-06, 1.5857e+01, 5.7598e-01, + 2DIAGNOSTIC, 20, -4.577986322818e-01, 1.529198529707e-06, 1.6465e+01, 6.0808e-01, + 2DIAGNOSTIC, 21, -4.577986025246e-01, 1.445925224636e-06, 1.7059e+01, 5.9417e-01, + 2DIAGNOSTIC, 22, -4.577983742896e-01, 1.370621587858e-06, 1.7559e+01, 5.0053e-01, + 2DIAGNOSTIC, 23, -4.577983559076e-01, 1.305405256558e-06, 1.8091e+01, 5.3170e-01, + 2DIAGNOSTIC, 24, -4.577985499676e-01, 1.259042137249e-06, 1.8563e+01, 4.7205e-01, + 2DIAGNOSTIC, 25, -4.577986254119e-01, 1.221321255025e-06, 1.9133e+01, 5.6956e-01, + 2DIAGNOSTIC, 26, -4.577988256705e-01, 1.193409101152e-06, 1.9649e+01, 5.1650e-01, + 2DIAGNOSTIC, 27, -4.577985457834e-01, 1.166066648843e-06, 2.0321e+01, 6.7149e-01, + 2DIAGNOSTIC, 28, -4.577985445644e-01, 1.138968093527e-06, 2.0893e+01, 5.7214e-01, + 2DIAGNOSTIC, 29, -4.577984887835e-01, 1.100291906413e-06, 2.1416e+01, 5.2282e-01, + 2DIAGNOSTIC, 30, -4.577985003499e-01, 1.063686792611e-06, 2.1984e+01, 5.6859e-01, + 2DIAGNOSTIC, 31, -4.577983883262e-01, 1.026405059522e-06, 2.2632e+01, 6.4714e-01, + Elapsed time (stage 0): 2.2984e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.153031967069e-01, 1.797693134862e+308, 1.8251e-01, 1.8251e-01, + 2DIAGNOSTIC, 2, -7.174619275452e-01, 1.797693134862e+308, 1.8448e-01, 1.9698e-03, + 2DIAGNOSTIC, 3, -7.205374179508e-01, 1.797693134862e+308, 1.8639e-01, 1.9040e-03, + 2DIAGNOSTIC, 4, -7.253230299502e-01, 1.797693134862e+308, 1.8829e-01, 1.9050e-03, + 2DIAGNOSTIC, 5, -7.297083576407e-01, 1.797693134862e+308, 1.9027e-01, 1.9810e-03, + 2DIAGNOSTIC, 6, -7.326193881900e-01, 1.797693134862e+308, 1.9218e-01, 1.9121e-03, + 2DIAGNOSTIC, 7, -7.334605657542e-01, 1.797693134862e+308, 1.9542e-01, 3.2320e-03, + 2DIAGNOSTIC, 8, -7.336593043872e-01, 1.797693134862e+308, 1.9732e-01, 1.9050e-03, + 2DIAGNOSTIC, 9, -7.338579618957e-01, 1.797693134862e+308, 1.9929e-01, 1.9681e-03, + 2DIAGNOSTIC, 10, -7.341197602607e-01, 1.824734777639e-03, 2.0175e-01, 2.4600e-03, + 2DIAGNOSTIC, 11, -7.342701400438e-01, 1.303253294522e-03, 2.0384e-01, 2.0921e-03, + 2DIAGNOSTIC, 12, -7.342921031127e-01, 8.242686351559e-04, 2.0596e-01, 2.1181e-03, + 2DIAGNOSTIC, 13, -7.345997901629e-01, 4.456186914000e-04, 2.0804e-01, 2.0840e-03, + 2DIAGNOSTIC, 14, -7.350881223426e-01, 2.254957147104e-04, 2.1046e-01, 2.4109e-03, + 2DIAGNOSTIC, 15, -7.361688175786e-01, 1.541996898652e-04, 2.1314e-01, 2.6820e-03, + 2DIAGNOSTIC, 16, -7.364332127103e-01, 1.541451274821e-04, 2.1539e-01, 2.2509e-03, + 2DIAGNOSTIC, 17, -7.366689684565e-01, 1.650121980181e-04, 2.1793e-01, 2.5449e-03, + 2DIAGNOSTIC, 18, -7.376948642509e-01, 1.861795398450e-04, 2.2514e-01, 7.2069e-03, + 2DIAGNOSTIC, 19, -7.376948508541e-01, 1.912440608070e-04, 2.2729e-01, 2.1460e-03, + 2DIAGNOSTIC, 20, -7.376949023827e-01, 1.832000740165e-04, 2.2935e-01, 2.0671e-03, + 2DIAGNOSTIC, 21, -7.376949894977e-01, 1.621381707477e-04, 2.3148e-01, 2.1291e-03, + 2DIAGNOSTIC, 22, -7.376951367534e-01, 1.285071843425e-04, 2.3357e-01, 2.0921e-03, + 2DIAGNOSTIC, 23, -7.376953856050e-01, 9.088113057257e-05, 2.3574e-01, 2.1610e-03, + 2DIAGNOSTIC, 24, -7.376958059658e-01, 5.547385125380e-05, 2.3784e-01, 2.1069e-03, + 2DIAGNOSTIC, 25, -7.376965155236e-01, 3.479253064407e-05, 2.4002e-01, 2.1751e-03, + 2DIAGNOSTIC, 26, -7.376977117677e-01, 1.660389695070e-05, 2.4213e-01, 2.1112e-03, + 2DIAGNOSTIC, 27, -7.376997242696e-01, 1.313071473129e-06, 2.4428e-01, 2.1551e-03, + 2DIAGNOSTIC, 28, -7.377031003286e-01, 1.351318394571e-06, 2.4649e-01, 2.2061e-03, + 2DIAGNOSTIC, 29, -7.377087772651e-01, 1.442031091703e-06, 2.4873e-01, 2.2411e-03, + 2DIAGNOSTIC, 30, -7.377181193573e-01, 1.614542520005e-06, 2.5106e-01, 2.3282e-03, + 2DIAGNOSTIC, 31, -7.377333002196e-01, 1.912563087743e-06, 2.5333e-01, 2.2669e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.313546519525e-01, 1.797693134862e+308, 4.6991e-01, 2.1658e-01, + 2DIAGNOSTIC, 2, -6.319779765698e-01, 1.797693134862e+308, 4.8428e-01, 1.4370e-02, + 2DIAGNOSTIC, 3, -6.325430512533e-01, 1.797693134862e+308, 4.9951e-01, 1.5228e-02, + 2DIAGNOSTIC, 4, -6.330661064620e-01, 1.797693134862e+308, 5.1643e-01, 1.6918e-02, + 2DIAGNOSTIC, 5, -6.331739631539e-01, 1.797693134862e+308, 5.3177e-01, 1.5345e-02, + 2DIAGNOSTIC, 6, -6.333057297738e-01, 1.797693134862e+308, 5.4878e-01, 1.7011e-02, + 2DIAGNOSTIC, 7, -6.333788780728e-01, 1.797693134862e+308, 5.6572e-01, 1.6940e-02, + 2DIAGNOSTIC, 8, -6.333849742647e-01, 1.797693134862e+308, 5.8454e-01, 1.8821e-02, + 2DIAGNOSTIC, 9, -6.333930196140e-01, 1.797693134862e+308, 6.0108e-01, 1.6534e-02, + 2DIAGNOSTIC, 10, -6.333910298953e-01, 1.842208450284e-04, 6.1762e-01, 1.6544e-02, + 2DIAGNOSTIC, 11, -6.333708355068e-01, 1.038742056662e-04, 6.3253e-01, 1.4907e-02, + 2DIAGNOSTIC, 12, -6.333889252863e-01, 5.152851722139e-05, 6.4859e-01, 1.6059e-02, + 2DIAGNOSTIC, 13, -6.334948838047e-01, 2.556266272069e-05, 6.6455e-01, 1.5966e-02, + 2DIAGNOSTIC, 14, -6.334948801456e-01, 1.786720697503e-05, 6.8870e-01, 2.4146e-02, + 2DIAGNOSTIC, 15, -6.335024135432e-01, 1.319407823475e-05, 7.0459e-01, 1.5896e-02, + 2DIAGNOSTIC, 16, -6.334780769567e-01, 1.110154128364e-05, 7.2233e-01, 1.7740e-02, + 2DIAGNOSTIC, 17, -6.334650274781e-01, 1.000471669202e-05, 7.3663e-01, 1.4295e-02, + 2DIAGNOSTIC, 18, -6.334384374945e-01, 7.711760634792e-06, 7.5089e-01, 1.4263e-02, + 2DIAGNOSTIC, 19, -6.334428042972e-01, 5.400100671217e-06, 7.6849e-01, 1.7594e-02, + 2DIAGNOSTIC, 20, -6.334299442387e-01, 2.681421326194e-06, 7.8430e-01, 1.5817e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.265608621222e-01, 1.797693134862e+308, 1.1606e+00, 3.7632e-01, + 2DIAGNOSTIC, 2, -5.272541645831e-01, 1.797693134862e+308, 1.2640e+00, 1.0335e-01, + 2DIAGNOSTIC, 3, -5.279885758819e-01, 1.797693134862e+308, 1.3665e+00, 1.0252e-01, + 2DIAGNOSTIC, 4, -5.286171344056e-01, 1.797693134862e+308, 1.4724e+00, 1.0586e-01, + 2DIAGNOSTIC, 5, -5.288780992625e-01, 1.797693134862e+308, 1.5689e+00, 9.6498e-02, + 2DIAGNOSTIC, 6, -5.290552479165e-01, 1.797693134862e+308, 1.7075e+00, 1.3869e-01, + 2DIAGNOSTIC, 7, -5.290550900492e-01, 1.797693134862e+308, 1.8088e+00, 1.0121e-01, + 2DIAGNOSTIC, 8, -5.290794612699e-01, 1.797693134862e+308, 1.9013e+00, 9.2512e-02, + 2DIAGNOSTIC, 9, -5.291426164646e-01, 1.797693134862e+308, 2.0057e+00, 1.0445e-01, + 2DIAGNOSTIC, 10, -5.292022200946e-01, 2.877116801590e-04, 2.1234e+00, 1.1770e-01, + 2DIAGNOSTIC, 11, -5.293622869466e-01, 1.803971688080e-04, 2.2810e+00, 1.5755e-01, + 2DIAGNOSTIC, 12, -5.293681745220e-01, 1.058313470991e-04, 2.3791e+00, 9.8133e-02, + 2DIAGNOSTIC, 13, -5.293793476653e-01, 6.385865367153e-05, 2.4730e+00, 9.3911e-02, + 2DIAGNOSTIC, 14, -5.293934415688e-01, 4.681872474492e-05, 2.5649e+00, 9.1920e-02, + 2DIAGNOSTIC, 15, -5.294109118737e-01, 3.772375989845e-05, 2.6590e+00, 9.4083e-02, + 2DIAGNOSTIC, 16, -5.294219890741e-01, 3.276570040879e-05, 2.7644e+00, 1.0540e-01, + 2DIAGNOSTIC, 17, -5.294237116230e-01, 2.562109379767e-05, 2.8682e+00, 1.0379e-01, + 2DIAGNOSTIC, 18, -5.294494898423e-01, 1.862294739062e-05, 3.0950e+00, 2.2682e-01, + 2DIAGNOSTIC, 19, -5.294476595870e-01, 1.251883735888e-05, 3.2124e+00, 1.1733e-01, + 2DIAGNOSTIC, 20, -5.294447330384e-01, 7.424370951643e-06, 3.3278e+00, 1.1540e-01, + 2DIAGNOSTIC, 21, -5.294429055854e-01, 6.331526328049e-06, 3.4452e+00, 1.1741e-01, + 2DIAGNOSTIC, 22, -5.294424353251e-01, 5.019693504728e-06, 3.5619e+00, 1.1671e-01, + 2DIAGNOSTIC, 23, -5.294416306218e-01, 3.718215791072e-06, 3.6661e+00, 1.0424e-01, + 2DIAGNOSTIC, 24, -5.294411455130e-01, 2.602013780301e-06, 3.7790e+00, 1.1286e-01, + 2DIAGNOSTIC, 25, -5.294387802330e-01, 1.783922947474e-06, 3.8768e+00, 9.7805e-02, + 2DIAGNOSTIC, 26, -5.294366923660e-01, 1.173213505755e-06, 3.9886e+00, 1.1177e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.577726389021e-01, 1.797693134862e+308, 5.2461e+00, 1.2575e+00, + 2DIAGNOSTIC, 2, -4.580053530834e-01, 1.797693134862e+308, 5.8291e+00, 5.8304e-01, + 2DIAGNOSTIC, 3, -4.581464728856e-01, 1.797693134862e+308, 6.4252e+00, 5.9610e-01, + 2DIAGNOSTIC, 4, -4.583198853682e-01, 1.797693134862e+308, 7.0201e+00, 5.9490e-01, + 2DIAGNOSTIC, 5, -4.584930457318e-01, 1.797693134862e+308, 7.7707e+00, 7.5062e-01, + 2DIAGNOSTIC, 6, -4.585847381647e-01, 1.797693134862e+308, 9.3779e+00, 1.6072e+00, + 2DIAGNOSTIC, 7, -4.585847682347e-01, 1.797693134862e+308, 1.0187e+01, 8.0924e-01, + 2DIAGNOSTIC, 8, -4.585846970037e-01, 1.797693134862e+308, 1.0844e+01, 6.5671e-01, + 2DIAGNOSTIC, 9, -4.585846415950e-01, 1.797693134862e+308, 1.1476e+01, 6.3162e-01, + 2DIAGNOSTIC, 10, -4.585846283043e-01, 1.125927684876e-04, 1.1993e+01, 5.1705e-01, + 2DIAGNOSTIC, 11, -4.585843330726e-01, 6.999243142901e-05, 1.2663e+01, 6.7047e-01, + 2DIAGNOSTIC, 12, -4.585842549245e-01, 4.052576362644e-05, 1.3297e+01, 6.3424e-01, + 2DIAGNOSTIC, 13, -4.585841565191e-01, 1.883367759919e-05, 1.3936e+01, 6.3882e-01, + 2DIAGNOSTIC, 14, -4.585839421940e-01, 6.252030802359e-06, 1.4564e+01, 6.2752e-01, + 2DIAGNOSTIC, 15, -4.585839472371e-01, 2.033660186029e-06, 1.5175e+01, 6.1117e-01, + 2DIAGNOSTIC, 16, -4.585839819487e-01, 1.904806410380e-06, 1.5959e+01, 7.8425e-01, + 2DIAGNOSTIC, 17, -4.585837757420e-01, 1.792400560516e-06, 1.6617e+01, 6.5750e-01, + 2DIAGNOSTIC, 18, -4.585838508340e-01, 1.700144307427e-06, 1.7271e+01, 6.5424e-01, + 2DIAGNOSTIC, 19, -4.585836311348e-01, 1.614736151963e-06, 1.7871e+01, 6.0051e-01, + 2DIAGNOSTIC, 20, -4.585837363836e-01, 1.546606329110e-06, 1.8466e+01, 5.9490e-01, + 2DIAGNOSTIC, 21, -4.585837599298e-01, 1.480872599741e-06, 1.9141e+01, 6.7487e-01, + 2DIAGNOSTIC, 22, -4.585838745868e-01, 1.425351482946e-06, 1.9735e+01, 5.9400e-01, + 2DIAGNOSTIC, 23, -4.585836054395e-01, 1.366862938841e-06, 2.0407e+01, 6.7243e-01, + 2DIAGNOSTIC, 24, -4.585832639704e-01, 1.300680476955e-06, 2.1021e+01, 6.1361e-01, + 2DIAGNOSTIC, 25, -4.585835370032e-01, 1.249161584491e-06, 2.1807e+01, 7.8611e-01, + 2DIAGNOSTIC, 26, -4.585832952439e-01, 1.198537582202e-06, 2.2472e+01, 6.6522e-01, + 2DIAGNOSTIC, 27, -4.585832076447e-01, 1.147299806686e-06, 2.3064e+01, 5.9203e-01, + 2DIAGNOSTIC, 28, -4.585831120390e-01, 1.102582295714e-06, 2.3584e+01, 5.1940e-01, + 2DIAGNOSTIC, 29, -4.585830568572e-01, 1.058310373087e-06, 2.4224e+01, 6.4027e-01, + 2DIAGNOSTIC, 30, -4.585831296205e-01, 1.024186887771e-06, 2.4818e+01, 5.9408e-01, + Elapsed time (stage 1): 2.5199e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.164780596999e-01, 1.797693134862e+308, 2.5158e-01, 2.5158e-01, + 1DIAGNOSTIC, 2, -9.264287477374e-01, 1.797693134862e+308, 3.4733e-01, 9.5752e-02, + 1DIAGNOSTIC, 3, -9.345124061516e-01, 1.797693134862e+308, 4.4414e-01, 9.6803e-02, + 1DIAGNOSTIC, 4, -9.402003551868e-01, 1.797693134862e+308, 5.3759e-01, 9.3453e-02, + 1DIAGNOSTIC, 5, -9.445280714009e-01, 1.797693134862e+308, 6.3378e-01, 9.6191e-02, + 1DIAGNOSTIC, 6, -9.479749110672e-01, 1.797693134862e+308, 7.2768e-01, 9.3894e-02, + 1DIAGNOSTIC, 7, -9.504457469501e-01, 1.797693134862e+308, 8.2632e-01, 9.8643e-02, + 1DIAGNOSTIC, 8, -9.526157292725e-01, 1.797693134862e+308, 9.2156e-01, 9.5239e-02, + 1DIAGNOSTIC, 9, -9.544810270352e-01, 1.797693134862e+308, 1.0245e+00, 1.0291e-01, + 1DIAGNOSTIC, 10, -9.560139940441e-01, 2.479418562840e-03, 1.1244e+00, 9.9892e-02, + 1DIAGNOSTIC, 11, -9.572066876319e-01, 1.748876522886e-03, 1.2227e+00, 9.8329e-02, + 1DIAGNOSTIC, 12, -9.582317804241e-01, 1.256809038456e-03, 1.3225e+00, 9.9789e-02, + 1DIAGNOSTIC, 13, -9.590185330751e-01, 9.310060761990e-04, 1.4194e+00, 9.6944e-02, + 1DIAGNOSTIC, 14, -9.596155143513e-01, 7.011120546255e-04, 1.5167e+00, 9.7305e-02, + 1DIAGNOSTIC, 15, -9.601158404009e-01, 5.337685292887e-04, 1.6151e+00, 9.8415e-02, + 1DIAGNOSTIC, 16, -9.604948880615e-01, 4.097975939536e-04, 1.7171e+00, 1.0196e-01, + 1DIAGNOSTIC, 17, -9.608486922929e-01, 3.121961114300e-04, 1.8162e+00, 9.9147e-02, + 1DIAGNOSTIC, 18, -9.608281095213e-01, 2.321031010037e-04, 1.9156e+00, 9.9309e-02, + 1DIAGNOSTIC, 19, -9.608933603421e-01, 1.693173847181e-04, 2.0135e+00, 9.7973e-02, + 1DIAGNOSTIC, 20, -9.607712176203e-01, 1.181262321253e-04, 2.1110e+00, 9.7474e-02, + 1DIAGNOSTIC, 21, -9.610681130600e-01, 8.196802513057e-05, 2.2096e+00, 9.8558e-02, + 1DIAGNOSTIC, 22, -9.608701943272e-01, 5.252891099657e-05, 2.3091e+00, 9.9534e-02, + 1DIAGNOSTIC, 23, -9.611246608037e-01, 3.441996859476e-05, 2.4048e+00, 9.5751e-02, + 1DIAGNOSTIC, 24, -9.609343412488e-01, 1.967697454845e-05, 2.4986e+00, 9.3719e-02, + 1DIAGNOSTIC, 25, -9.611285870817e-01, 1.267490707876e-05, 2.5959e+00, 9.7358e-02, + 1DIAGNOSTIC, 26, -9.609608716298e-01, 7.374950745875e-06, 2.6932e+00, 9.7245e-02, + 1DIAGNOSTIC, 27, -9.611568912106e-01, 8.012633966013e-06, 2.7926e+00, 9.9463e-02, + 1DIAGNOSTIC, 28, -9.609777230642e-01, 5.773868774046e-06, 2.8908e+00, 9.8144e-02, + 1DIAGNOSTIC, 29, -9.611515392629e-01, 5.812883700718e-06, 2.9912e+00, 1.0037e-01, + 1DIAGNOSTIC, 30, -9.609842550233e-01, 2.406187820395e-06, 3.0938e+00, 1.0263e-01, + 1DIAGNOSTIC, 31, -9.611559099843e-01, 3.699147840007e-06, 3.1872e+00, 9.3407e-02, + 1DIAGNOSTIC, 32, -9.609901803413e-01, 1.159262208582e-06, 3.2849e+00, 9.7729e-02, + 1DIAGNOSTIC, 33, -9.611458523512e-01, 2.555028429718e-06, 3.3854e+00, 1.0048e-01, + 1DIAGNOSTIC, 34, -9.609838661948e-01, 5.500256420668e-07, 3.4813e+00, 9.5951e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.078338661652e-01, 1.797693134862e+308, 4.3230e+00, 8.4169e-01, + 1DIAGNOSTIC, 2, -9.117018657593e-01, 1.797693134862e+308, 4.9882e+00, 6.6518e-01, + 1DIAGNOSTIC, 3, -9.150724681415e-01, 1.797693134862e+308, 5.6521e+00, 6.6392e-01, + 1DIAGNOSTIC, 4, -9.180232209771e-01, 1.797693134862e+308, 6.3146e+00, 6.6250e-01, + 1DIAGNOSTIC, 5, -9.207815369894e-01, 1.797693134862e+308, 6.9790e+00, 6.6432e-01, + 1DIAGNOSTIC, 6, -9.233801256445e-01, 1.797693134862e+308, 7.6489e+00, 6.6992e-01, + 1DIAGNOSTIC, 7, -9.257418504807e-01, 1.797693134862e+308, 8.3077e+00, 6.5883e-01, + 1DIAGNOSTIC, 8, -9.280050820369e-01, 1.797693134862e+308, 8.9694e+00, 6.6174e-01, + 1DIAGNOSTIC, 9, -9.301157270632e-01, 1.797693134862e+308, 9.6247e+00, 6.5527e-01, + 1DIAGNOSTIC, 10, -9.320727564798e-01, 1.651735082349e-03, 1.0286e+01, 6.6156e-01, + 1DIAGNOSTIC, 11, -9.338181831588e-01, 1.381592326641e-03, 1.0971e+01, 6.8435e-01, + 1DIAGNOSTIC, 12, -9.353331640197e-01, 1.169707421176e-03, 1.1632e+01, 6.6122e-01, + 1DIAGNOSTIC, 13, -9.365478194503e-01, 9.925922115078e-04, 1.2279e+01, 6.4683e-01, + 1DIAGNOSTIC, 14, -9.374196890761e-01, 8.339730550884e-04, 1.2943e+01, 6.6418e-01, + 1DIAGNOSTIC, 15, -9.381973021950e-01, 6.923268848967e-04, 1.3608e+01, 6.6525e-01, + 1DIAGNOSTIC, 16, -9.388861594899e-01, 5.675508516876e-04, 1.4273e+01, 6.6441e-01, + 1DIAGNOSTIC, 17, -9.394967201623e-01, 4.584208835409e-04, 1.4932e+01, 6.5936e-01, + 1DIAGNOSTIC, 18, -9.400284685888e-01, 3.663511520786e-04, 1.5603e+01, 6.7157e-01, + 1DIAGNOSTIC, 19, -9.405033836759e-01, 2.914763873179e-04, 1.6251e+01, 6.4731e-01, + 1DIAGNOSTIC, 20, -9.409294164854e-01, 2.332546804857e-04, 1.6896e+01, 6.4547e-01, + 1DIAGNOSTIC, 21, -9.413042517049e-01, 1.894930890958e-04, 1.7559e+01, 6.6290e-01, + 1DIAGNOSTIC, 22, -9.416397009729e-01, 1.575571880259e-04, 1.8234e+01, 6.7456e-01, + 1DIAGNOSTIC, 23, -9.419423058020e-01, 1.337564745432e-04, 1.8891e+01, 6.5721e-01, + 1DIAGNOSTIC, 24, -9.422155633284e-01, 1.139331082037e-04, 1.9542e+01, 6.5132e-01, + 1DIAGNOSTIC, 25, -9.424586746455e-01, 9.743636528866e-05, 2.0206e+01, 6.6375e-01, + 1DIAGNOSTIC, 26, -9.426794196805e-01, 8.371210892146e-05, 2.0847e+01, 6.4112e-01, + 1DIAGNOSTIC, 27, -9.428794963929e-01, 7.228596390105e-05, 2.1504e+01, 6.5730e-01, + 1DIAGNOSTIC, 28, -9.430578676589e-01, 6.260740093681e-05, 2.2159e+01, 6.5484e-01, + 1DIAGNOSTIC, 29, -9.432272916459e-01, 5.448024969186e-05, 2.2820e+01, 6.6101e-01, + 1DIAGNOSTIC, 30, -9.433728508048e-01, 4.758046541565e-05, 2.3483e+01, 6.6245e-01, + 1DIAGNOSTIC, 31, -9.435039544003e-01, 4.163358189986e-05, 2.4151e+01, 6.6836e-01, + 1DIAGNOSTIC, 32, -9.436149309599e-01, 3.640607761090e-05, 2.4813e+01, 6.6164e-01, + 1DIAGNOSTIC, 33, -9.437241347457e-01, 3.188977130784e-05, 2.5486e+01, 6.7295e-01, + 1DIAGNOSTIC, 34, -9.438246582461e-01, 2.800577293237e-05, 2.6122e+01, 6.3592e-01, + 1DIAGNOSTIC, 35, -9.439185766409e-01, 2.466313037265e-05, 2.6778e+01, 6.5604e-01, + 1DIAGNOSTIC, 36, -9.439999965361e-01, 2.176869179606e-05, 2.7443e+01, 6.6535e-01, + 1DIAGNOSTIC, 37, -9.440775002980e-01, 1.929910326278e-05, 2.8105e+01, 6.6216e-01, + 1DIAGNOSTIC, 38, -9.441487250641e-01, 1.717340054799e-05, 2.8770e+01, 6.6462e-01, + 1DIAGNOSTIC, 39, -9.442094240818e-01, 1.536934568181e-05, 2.9428e+01, 6.5850e-01, + 1DIAGNOSTIC, 40, -9.442620968003e-01, 1.375409572411e-05, 3.0100e+01, 6.7146e-01, + 1DIAGNOSTIC, 41, -9.443148521370e-01, 1.232942993906e-05, 3.0743e+01, 6.4293e-01, + 1DIAGNOSTIC, 42, -9.443663447610e-01, 1.102872066262e-05, 3.1389e+01, 6.4640e-01, + 1DIAGNOSTIC, 43, -9.444183423783e-01, 9.930523447325e-06, 3.2039e+01, 6.4968e-01, + 1DIAGNOSTIC, 44, -9.444592492333e-01, 8.966147296209e-06, 3.2705e+01, 6.6650e-01, + 1DIAGNOSTIC, 45, -9.444949866483e-01, 8.122366087823e-06, 3.3372e+01, 6.6672e-01, + 1DIAGNOSTIC, 46, -9.445293678325e-01, 7.360950647173e-06, 3.4062e+01, 6.8959e-01, + 1DIAGNOSTIC, 47, -9.445601126123e-01, 6.682061012064e-06, 3.4721e+01, 6.5934e-01, + 1DIAGNOSTIC, 48, -9.445874486945e-01, 6.070809043929e-06, 3.5375e+01, 6.5374e-01, + 1DIAGNOSTIC, 49, -9.446061858885e-01, 5.452652288466e-06, 3.6044e+01, 6.6933e-01, + 1DIAGNOSTIC, 50, -9.446268181023e-01, 4.839782362275e-06, 3.6712e+01, 6.6813e-01, + 1DIAGNOSTIC, 51, -9.446432495601e-01, 4.253905720099e-06, 3.7375e+01, 6.6307e-01, + 1DIAGNOSTIC, 52, -9.446578262322e-01, 3.721454129385e-06, 3.8048e+01, 6.7241e-01, + 1DIAGNOSTIC, 53, -9.446718860146e-01, 3.284624200531e-06, 3.8712e+01, 6.6421e-01, + 1DIAGNOSTIC, 54, -9.446745392904e-01, 2.847887157487e-06, 3.9376e+01, 6.6422e-01, + 1DIAGNOSTIC, 55, -9.446835450769e-01, 2.455159482422e-06, 4.0035e+01, 6.5869e-01, + 1DIAGNOSTIC, 56, -9.446842373335e-01, 2.082708720319e-06, 4.0693e+01, 6.5814e-01, + 1DIAGNOSTIC, 57, -9.446911314662e-01, 1.775708002062e-06, 4.1366e+01, 6.7325e-01, + 1DIAGNOSTIC, 58, -9.446970023820e-01, 1.534045159651e-06, 4.2030e+01, 6.6394e-01, + 1DIAGNOSTIC, 59, -9.447124754928e-01, 1.379814610274e-06, 4.2695e+01, 6.6453e-01, + 1DIAGNOSTIC, 60, -9.447162857410e-01, 1.271023073041e-06, 4.3360e+01, 6.6529e-01, + 1DIAGNOSTIC, 61, -9.447169563102e-01, 1.179168571414e-06, 4.4022e+01, 6.6261e-01, + 1DIAGNOSTIC, 62, -9.447181160522e-01, 1.103669286392e-06, 4.4696e+01, 6.7402e-01, + 1DIAGNOSTIC, 63, -9.447249402111e-01, 1.073809299097e-06, 4.5352e+01, 6.5593e-01, + 1DIAGNOSTIC, 64, -9.447249529362e-01, 1.000130935340e-06, 4.6024e+01, 6.7197e-01, + 1DIAGNOSTIC, 65, -9.447213248307e-01, 9.062014325462e-07, 4.6691e+01, 6.6702e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.874226579433e-01, 1.797693134862e+308, 5.2303e+01, 5.6119e+00, + 1DIAGNOSTIC, 2, -8.905118758585e-01, 1.797693134862e+308, 5.7670e+01, 5.3667e+00, + 1DIAGNOSTIC, 3, -8.940011988955e-01, 1.797693134862e+308, 6.3045e+01, 5.3748e+00, + 1DIAGNOSTIC, 4, -8.969239998830e-01, 1.797693134862e+308, 6.8347e+01, 5.3027e+00, + 1DIAGNOSTIC, 5, -8.992753546331e-01, 1.797693134862e+308, 7.3701e+01, 5.3531e+00, + 1DIAGNOSTIC, 6, -9.015453255688e-01, 1.797693134862e+308, 7.9051e+01, 5.3503e+00, + 1DIAGNOSTIC, 7, -9.034783707884e-01, 1.797693134862e+308, 8.4427e+01, 5.3760e+00, + 1DIAGNOSTIC, 8, -9.052125671203e-01, 1.797693134862e+308, 8.9779e+01, 5.3524e+00, + 1DIAGNOSTIC, 9, -9.068182729312e-01, 1.797693134862e+308, 9.5162e+01, 5.3829e+00, + 1DIAGNOSTIC, 10, -9.083470387867e-01, 1.471906354227e-03, 1.0053e+02, 5.3673e+00, + 1DIAGNOSTIC, 11, -9.095612283705e-01, 1.197352101805e-03, 1.0589e+02, 5.3614e+00, + 1DIAGNOSTIC, 12, -9.107871131517e-01, 9.736037931243e-04, 1.1126e+02, 5.3667e+00, + 1DIAGNOSTIC, 13, -9.117888778436e-01, 8.044490581547e-04, 1.1660e+02, 5.3444e+00, + 1DIAGNOSTIC, 14, -9.128272953889e-01, 6.750024356500e-04, 1.2205e+02, 5.4520e+00, + 1DIAGNOSTIC, 15, -9.137434349121e-01, 5.691185529039e-04, 1.2744e+02, 5.3813e+00, + 1DIAGNOSTIC, 16, -9.144188797969e-01, 4.817820192028e-04, 1.3279e+02, 5.3502e+00, + 1DIAGNOSTIC, 17, -9.150241937814e-01, 4.071009735654e-04, 1.3817e+02, 5.3810e+00, + 1DIAGNOSTIC, 18, -9.155708718140e-01, 3.426828363280e-04, 1.4350e+02, 5.3374e+00, + 1DIAGNOSTIC, 19, -9.160806209452e-01, 2.879505453121e-04, 1.4888e+02, 5.3791e+00, + 1DIAGNOSTIC, 20, -9.165521880360e-01, 2.431440033758e-04, 1.5426e+02, 5.3746e+00, + 1DIAGNOSTIC, 21, -9.169881212017e-01, 2.044551688015e-04, 1.5963e+02, 5.3760e+00, + 1DIAGNOSTIC, 22, -9.174008256869e-01, 1.734994169946e-04, 1.6501e+02, 5.3774e+00, + 1DIAGNOSTIC, 23, -9.177897821634e-01, 1.478282111855e-04, 1.7039e+02, 5.3821e+00, + 1DIAGNOSTIC, 24, -9.181617401419e-01, 1.287261674838e-04, 1.7574e+02, 5.3466e+00, + 1DIAGNOSTIC, 25, -9.185138119186e-01, 1.149010577617e-04, 1.8111e+02, 5.3734e+00, + 1DIAGNOSTIC, 26, -9.188523930431e-01, 1.035108499755e-04, 1.8647e+02, 5.3615e+00, + 1DIAGNOSTIC, 27, -9.191762080035e-01, 9.396483953149e-05, 1.9182e+02, 5.3485e+00, + 1DIAGNOSTIC, 28, -9.194894208189e-01, 8.583181985779e-05, 1.9719e+02, 5.3701e+00, + 1DIAGNOSTIC, 29, -9.197885751049e-01, 7.887008111257e-05, 2.0262e+02, 5.4244e+00, + 1DIAGNOSTIC, 30, -9.200764529651e-01, 7.283106583480e-05, 2.0797e+02, 5.3542e+00, + 1DIAGNOSTIC, 31, -9.203529838910e-01, 6.747645520224e-05, 2.1337e+02, 5.3964e+00, + 1DIAGNOSTIC, 32, -9.206177173078e-01, 6.268698295972e-05, 2.1875e+02, 5.3779e+00, + 1DIAGNOSTIC, 33, -9.208762939935e-01, 5.838361100127e-05, 2.2416e+02, 5.4163e+00, + 1DIAGNOSTIC, 34, -9.211204991850e-01, 5.446492152485e-05, 2.2953e+02, 5.3639e+00, + 1DIAGNOSTIC, 35, -9.213544604949e-01, 5.084107797551e-05, 2.3493e+02, 5.4011e+00, + 1DIAGNOSTIC, 36, -9.215782010837e-01, 4.748040244875e-05, 2.4028e+02, 5.3543e+00, + 1DIAGNOSTIC, 37, -9.217904526448e-01, 4.432572361984e-05, 2.4566e+02, 5.3816e+00, + 1DIAGNOSTIC, 38, -9.219969063761e-01, 4.140592150994e-05, 2.5103e+02, 5.3667e+00, + 1DIAGNOSTIC, 39, -9.221959495705e-01, 3.869868247584e-05, 2.5643e+02, 5.3991e+00, + 1DIAGNOSTIC, 40, -9.223860991519e-01, 3.618929232973e-05, 2.6179e+02, 5.3583e+00, + 1DIAGNOSTIC, 41, -9.225670105236e-01, 3.385586562715e-05, 2.6717e+02, 5.3871e+00, + 1DIAGNOSTIC, 42, -9.227393346908e-01, 3.167339454862e-05, 2.7253e+02, 5.3526e+00, + 1DIAGNOSTIC, 43, -9.229025140820e-01, 2.965337133209e-05, 2.7794e+02, 5.4169e+00, + 1DIAGNOSTIC, 44, -9.230598703133e-01, 2.776513435082e-05, 2.8333e+02, 5.3869e+00, + 1DIAGNOSTIC, 45, -9.232133165045e-01, 2.601887110541e-05, 2.8870e+02, 5.3712e+00, + 1DIAGNOSTIC, 46, -9.233588892974e-01, 2.439219935028e-05, 2.9408e+02, 5.3754e+00, + 1DIAGNOSTIC, 47, -9.235004536488e-01, 2.287754147290e-05, 2.9948e+02, 5.3984e+00, + 1DIAGNOSTIC, 48, -9.236350293383e-01, 2.148074764223e-05, 3.0483e+02, 5.3569e+00, + 1DIAGNOSTIC, 49, -9.237637148108e-01, 2.019907623705e-05, 3.1019e+02, 5.3543e+00, + 1DIAGNOSTIC, 50, -9.238871197820e-01, 1.901889743970e-05, 3.1560e+02, 5.4086e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.821413137755e-01, 1.797693134862e+308, 3.5966e+02, 4.4067e+01, + 1DIAGNOSTIC, 2, -8.840879173167e-01, 1.797693134862e+308, 4.0338e+02, 4.3718e+01, + 1DIAGNOSTIC, 3, -8.862657233094e-01, 1.797693134862e+308, 4.4692e+02, 4.3538e+01, + 1DIAGNOSTIC, 4, -8.883043466464e-01, 1.797693134862e+308, 4.9025e+02, 4.3332e+01, + 1DIAGNOSTIC, 5, -8.898446847028e-01, 1.797693134862e+308, 5.3362e+02, 4.3366e+01, + 1DIAGNOSTIC, 6, -8.910354468684e-01, 1.797693134862e+308, 5.7727e+02, 4.3656e+01, + 1DIAGNOSTIC, 7, -8.919869869609e-01, 1.797693134862e+308, 6.2056e+02, 4.3290e+01, + 1DIAGNOSTIC, 8, -8.927662376098e-01, 1.797693134862e+308, 6.6396e+02, 4.3396e+01, + 1DIAGNOSTIC, 9, -8.934472702287e-01, 1.797693134862e+308, 7.0740e+02, 4.3444e+01, + 1DIAGNOSTIC, 10, -8.940642003999e-01, 8.525370751622e-04, 7.5066e+02, 4.3253e+01, + 1DIAGNOSTIC, 11, -8.946562891221e-01, 6.565609160611e-04, 7.9411e+02, 4.3455e+01, + 1DIAGNOSTIC, 12, -8.952342828077e-01, 5.010392782473e-04, 8.3737e+02, 4.3256e+01, + 1DIAGNOSTIC, 13, -8.958083021561e-01, 3.911505303349e-04, 8.8078e+02, 4.3418e+01, + 1DIAGNOSTIC, 14, -8.964170331275e-01, 3.213451678776e-04, 9.2441e+02, 4.3624e+01, + 1DIAGNOSTIC, 15, -8.970578192123e-01, 2.775663415145e-04, 9.6814e+02, 4.3733e+01, + 1DIAGNOSTIC, 16, -8.976321519414e-01, 2.487311868077e-04, 1.0118e+03, 4.3668e+01, + 1DIAGNOSTIC, 17, -8.983436115320e-01, 2.314327070219e-04, 1.0555e+03, 4.3723e+01, + 1DIAGNOSTIC, 18, -8.988210695702e-01, 2.167469371276e-04, 1.0993e+03, 4.3745e+01, + 1DIAGNOSTIC, 19, -8.993861338996e-01, 2.043742406397e-04, 1.1430e+03, 4.3725e+01, + 1DIAGNOSTIC, 20, -8.998474095347e-01, 1.913310197917e-04, 1.1866e+03, 4.3636e+01, + Elapsed time (stage 2): 1187 + + +Total elapsed time: 1235 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:24 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:24 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:27 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:32 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:35 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:35 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 3912 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:36 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:39 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:40 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 3973 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:40 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:43 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:43 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4017 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:43 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4026 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:43 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:24 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:26 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:26 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:27 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:28 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:31 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:31 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:32 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:33 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:36 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:36 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:36 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:45 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:56 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC003 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:56 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC003 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:57 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC003 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc/sub-PNC003_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc/sub-PNC003_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LabelImageGaussianInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:57:01 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +INFO: using NIfTI-1 qform +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:57:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc/sub-PNC003_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc/sub-PNC003_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LabelImageGaussianInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:57:04 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +INFO: using NIfTI-1 qform +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz +** AFNI converts NIFTI_datatype=8 (INT32) in file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:57:04 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC003_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 89.750 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/logs/proc_func_18-03-2024-26302.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:58:04 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC003 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/QC/sub-PNC003_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC003* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 89.817 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC003_ses-01 +========================reprocessing without filter=================== +sub-PNC003_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC003 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC003 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC003 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC003 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:58:24 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:58:24 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz is 34.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:00:31 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:02:38 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:02:53 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.23 (mm) at sub-brick 179 +++ Max delta displ in automask = 0.19 (mm) at sub-brick 169 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:16:05 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:16:23 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz is 34.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:18:32 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:20:40 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz is 34.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:22:53 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.414 -1.822 3.151 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.192 -2.315 5.819 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.4 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:27:39 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:28:10 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5631ae2ec6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [111.602, 60.4191, -114.879] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5631ae163730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5631ae303320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5631ae2effa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [86.4485, 111.5, -133.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5631ae2f5e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5631aeb00230 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5631aeafe5c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [111.602, 60.4191, -114.879] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5631ae2f23f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5631af73a450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5631aeafcda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [86.4485, 111.5, -133.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5631ae2f9360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5631aff34780 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.828323503142e-01, 1.797693134862e+308, 4.4389e-02, 4.4388e-02, + 2DIAGNOSTIC, 2, -6.840180266256e-01, 1.797693134862e+308, 4.5824e-02, 1.4348e-03, + 2DIAGNOSTIC, 3, -6.878152682561e-01, 1.797693134862e+308, 4.7177e-02, 1.3528e-03, + 2DIAGNOSTIC, 4, -6.919240202676e-01, 1.797693134862e+308, 4.8819e-02, 1.6420e-03, + 2DIAGNOSTIC, 5, -6.970858655971e-01, 1.797693134862e+308, 5.0191e-02, 1.3721e-03, + 2DIAGNOSTIC, 6, -7.058009477239e-01, 1.797693134862e+308, 5.2329e-02, 2.1381e-03, + 2DIAGNOSTIC, 7, -7.078751152994e-01, 1.797693134862e+308, 5.3977e-02, 1.6479e-03, + 2DIAGNOSTIC, 8, -7.109200056654e-01, 1.797693134862e+308, 5.5531e-02, 1.5540e-03, + 2DIAGNOSTIC, 9, -7.098821892278e-01, 1.797693134862e+308, 5.7106e-02, 1.5750e-03, + 2DIAGNOSTIC, 10, -7.102202821954e-01, 3.057119252238e-03, 5.8676e-02, 1.5700e-03, + 2DIAGNOSTIC, 11, -7.103211957406e-01, 2.413036193212e-03, 6.0219e-02, 1.5430e-03, + 2DIAGNOSTIC, 12, -7.104352208429e-01, 1.703469646558e-03, 6.1979e-02, 1.7600e-03, + 2DIAGNOSTIC, 13, -7.106086317261e-01, 1.075862712071e-03, 6.4168e-02, 2.1889e-03, + 2DIAGNOSTIC, 14, -7.106171866098e-01, 5.604434012357e-04, 6.5716e-02, 1.5481e-03, + 2DIAGNOSTIC, 15, -7.106676683230e-01, 1.994546168174e-04, 6.7241e-02, 1.5252e-03, + 2DIAGNOSTIC, 16, -7.111611669502e-01, 9.753251019384e-05, 6.8788e-02, 1.5471e-03, + 2DIAGNOSTIC, 17, -7.115079320130e-01, 5.382271486354e-05, 7.0697e-02, 1.9090e-03, + 2DIAGNOSTIC, 18, -7.145046170214e-01, 1.463048581678e-04, 7.2909e-02, 2.2118e-03, + 2DIAGNOSTIC, 19, -7.260582907105e-01, 4.365895693730e-04, 7.5322e-02, 2.4130e-03, + 2DIAGNOSTIC, 20, -7.346241086562e-01, 8.294344764631e-04, 7.7496e-02, 2.1741e-03, + 2DIAGNOSTIC, 21, -7.383086868536e-01, 1.177245131158e-03, 7.9923e-02, 2.4271e-03, + 2DIAGNOSTIC, 22, -7.392922640286e-01, 1.405459714079e-03, 8.1529e-02, 1.6060e-03, + 2DIAGNOSTIC, 23, -7.404373918587e-01, 1.505924821890e-03, 8.3057e-02, 1.5278e-03, + 2DIAGNOSTIC, 24, -7.408343760915e-01, 1.460463605782e-03, 8.5449e-02, 2.3921e-03, + 2DIAGNOSTIC, 25, -7.409180987007e-01, 1.281815961026e-03, 8.6797e-02, 1.3480e-03, + 2DIAGNOSTIC, 26, -7.414141089096e-01, 1.014373843995e-03, 8.8128e-02, 1.3311e-03, + 2DIAGNOSTIC, 27, -7.419354738528e-01, 6.871432829790e-04, 9.0052e-02, 1.9238e-03, + 2DIAGNOSTIC, 28, -7.421431369878e-01, 3.620536954307e-04, 9.1916e-02, 1.8642e-03, + 2DIAGNOSTIC, 29, -7.426865771555e-01, 1.887851269635e-04, 9.3587e-02, 1.6711e-03, + 2DIAGNOSTIC, 30, -7.446383318319e-01, 1.473220926130e-04, 9.5320e-02, 1.7331e-03, + 2DIAGNOSTIC, 31, -7.448222079559e-01, 1.432918681893e-04, 9.7529e-02, 2.2089e-03, + 2DIAGNOSTIC, 32, -7.451211138768e-01, 1.417409609855e-04, 9.9050e-02, 1.5211e-03, + 2DIAGNOSTIC, 33, -7.452614302841e-01, 1.424999208790e-04, 1.0056e-01, 1.5140e-03, + 2DIAGNOSTIC, 34, -7.454864756881e-01, 1.369665872609e-04, 1.0230e-01, 1.7350e-03, + 2DIAGNOSTIC, 35, -7.458288003801e-01, 1.231869124550e-04, 1.0543e-01, 3.1281e-03, + 2DIAGNOSTIC, 36, -7.458405761259e-01, 1.039097338144e-04, 1.0690e-01, 1.4701e-03, + 2DIAGNOSTIC, 37, -7.458802709191e-01, 8.222618856260e-05, 1.0838e-01, 1.4870e-03, + 2DIAGNOSTIC, 38, -7.459227419715e-01, 5.667679030351e-05, 1.0985e-01, 1.4648e-03, + 2DIAGNOSTIC, 39, -7.459593885782e-01, 3.244067226739e-05, 1.1133e-01, 1.4770e-03, + 2DIAGNOSTIC, 40, -7.459925586081e-01, 2.582921272681e-05, 1.1283e-01, 1.5030e-03, + 2DIAGNOSTIC, 41, -7.460371194495e-01, 1.930164130371e-05, 1.1427e-01, 1.4429e-03, + 2DIAGNOSTIC, 42, -7.461300830988e-01, 1.500832984448e-05, 1.1574e-01, 1.4720e-03, + 2DIAGNOSTIC, 43, -7.462512757638e-01, 1.189701493966e-05, 1.1726e-01, 1.5171e-03, + 2DIAGNOSTIC, 44, -7.475349088262e-01, 2.116557732052e-05, 1.1945e-01, 2.1858e-03, + 2DIAGNOSTIC, 45, -7.478724037942e-01, 3.366646578678e-05, 1.2125e-01, 1.7998e-03, + 2DIAGNOSTIC, 46, -7.489853631228e-01, 5.205734663322e-05, 1.2362e-01, 2.3711e-03, + 2DIAGNOSTIC, 47, -7.489779709939e-01, 6.492221616707e-05, 1.2513e-01, 1.5121e-03, + 2DIAGNOSTIC, 48, -7.494955876339e-01, 7.573387756201e-05, 1.2662e-01, 1.4880e-03, + 2DIAGNOSTIC, 49, -7.510035082420e-01, 9.103227744927e-05, 1.2835e-01, 1.7321e-03, + 2DIAGNOSTIC, 50, -7.509279067398e-01, 9.632492667921e-05, 1.3030e-01, 1.9500e-03, + 2DIAGNOSTIC, 51, -7.512135358309e-01, 9.497115081018e-05, 1.3177e-01, 1.4679e-03, + 2DIAGNOSTIC, 52, -7.534553843427e-01, 1.022873153514e-04, 1.3345e-01, 1.6859e-03, + 2DIAGNOSTIC, 53, -7.594066144551e-01, 1.434173626639e-04, 1.3537e-01, 1.9190e-03, + 2DIAGNOSTIC, 54, -7.602173680251e-01, 1.831620397510e-04, 1.3716e-01, 1.7841e-03, + 2DIAGNOSTIC, 55, -7.616000112740e-01, 2.164127032682e-04, 1.3887e-01, 1.7130e-03, + 2DIAGNOSTIC, 56, -7.617534406346e-01, 2.370713228754e-04, 1.4037e-01, 1.5001e-03, + 2DIAGNOSTIC, 57, -7.618014161426e-01, 2.343133923186e-04, 1.4210e-01, 1.7321e-03, + 2DIAGNOSTIC, 58, -7.618623487420e-01, 2.122066688480e-04, 1.4386e-01, 1.7531e-03, + 2DIAGNOSTIC, 59, -7.619557615895e-01, 1.810594189431e-04, 1.4538e-01, 1.5230e-03, + 2DIAGNOSTIC, 60, -7.621236139544e-01, 1.347985797620e-04, 1.4708e-01, 1.6980e-03, + 2DIAGNOSTIC, 61, -7.639058625272e-01, 9.036555142991e-05, 1.4861e-01, 1.5311e-03, + 2DIAGNOSTIC, 62, -7.656907466733e-01, 6.270082355906e-05, 1.5034e-01, 1.7300e-03, + 2DIAGNOSTIC, 63, -7.685357162148e-01, 8.366422185761e-05, 1.5256e-01, 2.2240e-03, + 2DIAGNOSTIC, 64, -7.701425542541e-01, 1.100886980624e-04, 1.5405e-01, 1.4920e-03, + 2DIAGNOSTIC, 65, -7.935892055709e-01, 2.722537802737e-04, 1.5554e-01, 1.4892e-03, + 2DIAGNOSTIC, 66, -8.755739919014e-01, 8.767007531293e-04, 1.5778e-01, 2.2409e-03, + 2DIAGNOSTIC, 67, -8.873684121336e-01, 1.431134860414e-03, 1.5930e-01, 1.5152e-03, + 2DIAGNOSTIC, 68, -8.893762579817e-01, 1.845805895479e-03, 1.6103e-01, 1.7290e-03, + 2DIAGNOSTIC, 69, -8.903482964976e-01, 2.082015938624e-03, 1.6273e-01, 1.6980e-03, + 2DIAGNOSTIC, 70, -8.903093816643e-01, 2.108018616061e-03, 1.6421e-01, 1.4849e-03, + 2DIAGNOSTIC, 71, -8.892274098958e-01, 1.926438283363e-03, 1.6569e-01, 1.4780e-03, + 2DIAGNOSTIC, 72, -8.908127217262e-01, 1.582391474349e-03, 1.6721e-01, 1.5171e-03, + 2DIAGNOSTIC, 73, -8.939298634152e-01, 1.135364861143e-03, 1.6876e-01, 1.5500e-03, + 2DIAGNOSTIC, 74, -8.981457002798e-01, 6.249380634031e-04, 1.7023e-01, 1.4760e-03, + 2DIAGNOSTIC, 75, -9.173483801167e-01, 2.724803274508e-04, 1.7223e-01, 2.0020e-03, + 2DIAGNOSTIC, 76, -9.242729961479e-01, 3.386546132767e-04, 1.7447e-01, 2.2349e-03, + 2DIAGNOSTIC, 77, -9.297183691413e-01, 4.536921781626e-04, 1.7646e-01, 1.9932e-03, + 2DIAGNOSTIC, 78, -9.313098074643e-01, 5.392119301861e-04, 1.7915e-01, 2.6910e-03, + 2DIAGNOSTIC, 79, -9.313480858261e-01, 5.749177053476e-04, 1.8064e-01, 1.4899e-03, + 2DIAGNOSTIC, 80, -9.316574393755e-01, 5.547218307115e-04, 1.8210e-01, 1.4610e-03, + 2DIAGNOSTIC, 81, -9.321260149274e-01, 4.783324000772e-04, 1.8359e-01, 1.4839e-03, + 2DIAGNOSTIC, 82, -9.327897404578e-01, 3.688516318883e-04, 1.8531e-01, 1.7211e-03, + 2DIAGNOSTIC, 83, -9.331225512132e-01, 2.430209634889e-04, 1.8675e-01, 1.4379e-03, + 2DIAGNOSTIC, 84, -9.327556575701e-01, 1.125124701285e-04, 1.8820e-01, 1.4501e-03, + 2DIAGNOSTIC, 85, -9.333079333775e-01, 5.932907934669e-05, 1.8970e-01, 1.5059e-03, + 2DIAGNOSTIC, 86, -9.340056058496e-01, 3.353332118741e-05, 1.9136e-01, 1.6561e-03, + 2DIAGNOSTIC, 87, -9.347908586875e-01, 3.096712895667e-05, 1.9286e-01, 1.5001e-03, + 2DIAGNOSTIC, 88, -9.351461160635e-01, 3.353816806184e-05, 1.9430e-01, 1.4439e-03, + 2DIAGNOSTIC, 89, -9.363432321790e-01, 3.795185320834e-05, 1.9579e-01, 1.4901e-03, + 2DIAGNOSTIC, 90, -9.382611714155e-01, 4.744737682947e-05, 1.9820e-01, 2.4061e-03, + 2DIAGNOSTIC, 91, -9.383798926499e-01, 5.419275420324e-05, 1.9973e-01, 1.5278e-03, + 2DIAGNOSTIC, 92, -9.386396366101e-01, 5.924634149766e-05, 2.0126e-01, 1.5290e-03, + 2DIAGNOSTIC, 93, -9.400356788289e-01, 6.531274546385e-05, 2.0320e-01, 1.9438e-03, + 2DIAGNOSTIC, 94, -9.401549594478e-01, 6.379233566000e-05, 2.0469e-01, 1.4920e-03, + 2DIAGNOSTIC, 95, -9.404631123641e-01, 5.933060474047e-05, 2.0616e-01, 1.4670e-03, + 2DIAGNOSTIC, 96, -9.423894871313e-01, 5.905580369363e-05, 2.0860e-01, 2.4409e-03, + 2DIAGNOSTIC, 97, -9.422533234346e-01, 5.541340063771e-05, 2.1102e-01, 2.4240e-03, + 2DIAGNOSTIC, 98, -9.424659192994e-01, 4.859187487978e-05, 2.1253e-01, 1.5070e-03, + 2DIAGNOSTIC, 99, -9.422985553628e-01, 4.084011618407e-05, 2.1400e-01, 1.4741e-03, + 2DIAGNOSTIC, 100, -9.429934303609e-01, 3.866171238544e-05, 2.1570e-01, 1.6999e-03, + 2DIAGNOSTIC, 101, -9.441976327262e-01, 3.732029400236e-05, 2.1720e-01, 1.4920e-03, + 2DIAGNOSTIC, 102, -9.434934367519e-01, 3.066415337879e-05, 2.1870e-01, 1.5061e-03, + 2DIAGNOSTIC, 103, -9.437800255371e-01, 2.724086987136e-05, 2.2019e-01, 1.4920e-03, + 2DIAGNOSTIC, 104, -9.441630538472e-01, 2.304230231892e-05, 2.2164e-01, 1.4429e-03, + 2DIAGNOSTIC, 105, -9.438033964870e-01, 1.627624368258e-05, 2.2406e-01, 2.4230e-03, + 2DIAGNOSTIC, 106, -9.441112907415e-01, 1.551771620218e-05, 2.2552e-01, 1.4620e-03, + 2DIAGNOSTIC, 107, -9.442977950448e-01, 1.348121231269e-05, 2.2699e-01, 1.4720e-03, + 2DIAGNOSTIC, 108, -9.447013738702e-01, 1.228162491030e-05, 2.2850e-01, 1.5101e-03, + 2DIAGNOSTIC, 109, -9.473519500902e-01, 1.781413891056e-05, 2.2998e-01, 1.4732e-03, + 2DIAGNOSTIC, 110, -9.527091844438e-01, 4.038159395607e-05, 2.3262e-01, 2.6379e-03, + 2DIAGNOSTIC, 111, -9.529136287077e-01, 6.273391522200e-05, 2.3410e-01, 1.4880e-03, + 2DIAGNOSTIC, 112, -9.530022032666e-01, 7.694007772369e-05, 2.3560e-01, 1.4930e-03, + 2DIAGNOSTIC, 113, -9.531102597670e-01, 8.483119241272e-05, 2.3731e-01, 1.7159e-03, + 2DIAGNOSTIC, 114, -9.531866920808e-01, 8.563002237470e-05, 2.3937e-01, 2.0549e-03, + 2DIAGNOSTIC, 115, -9.532488771645e-01, 7.695553072185e-05, 2.4085e-01, 1.4858e-03, + 2DIAGNOSTIC, 116, -9.533281248813e-01, 6.224465756869e-05, 2.4231e-01, 1.4589e-03, + 2DIAGNOSTIC, 117, -9.546744558293e-01, 4.665485034204e-05, 2.4404e-01, 1.7290e-03, + 2DIAGNOSTIC, 118, -9.549625744013e-01, 2.876431467132e-05, 2.4600e-01, 1.9569e-03, + 2DIAGNOSTIC, 119, -9.584247935095e-01, 2.572458564306e-05, 2.5167e-01, 5.6741e-03, + 2DIAGNOSTIC, 120, -9.584247822295e-01, 3.539534126342e-05, 2.5312e-01, 1.4460e-03, + 2DIAGNOSTIC, 121, -9.584248070146e-01, 4.217430806527e-05, 2.5453e-01, 1.4160e-03, + 2DIAGNOSTIC, 122, -9.584248489180e-01, 4.510457311413e-05, 2.5602e-01, 1.4830e-03, + 2DIAGNOSTIC, 123, -9.584249197538e-01, 4.387505060156e-05, 2.5754e-01, 1.5180e-03, + 2DIAGNOSTIC, 124, -9.584250394730e-01, 3.855089500951e-05, 2.5899e-01, 1.4560e-03, + 2DIAGNOSTIC, 125, -9.584252417357e-01, 2.980312606711e-05, 2.6045e-01, 1.4591e-03, + 2DIAGNOSTIC, 126, -9.584255832442e-01, 1.862793426234e-05, 2.6193e-01, 1.4789e-03, + 2DIAGNOSTIC, 127, -9.584261592634e-01, 9.579278399648e-06, 2.6343e-01, 1.4970e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.921899102963e-01, 1.797693134862e+308, 3.1380e-01, 5.0371e-02, + 2DIAGNOSTIC, 2, -5.912304602039e-01, 1.797693134862e+308, 3.1669e-01, 2.8880e-03, + 2DIAGNOSTIC, 3, -5.925869559836e-01, 1.797693134862e+308, 3.2010e-01, 3.4151e-03, + 2DIAGNOSTIC, 4, -5.945976738133e-01, 1.797693134862e+308, 3.2307e-01, 2.9700e-03, + 2DIAGNOSTIC, 5, -5.960320824868e-01, 1.797693134862e+308, 3.2560e-01, 2.5270e-03, + 2DIAGNOSTIC, 6, -5.965177640150e-01, 1.797693134862e+308, 3.2818e-01, 2.5790e-03, + 2DIAGNOSTIC, 7, -5.974982639856e-01, 1.797693134862e+308, 3.3046e-01, 2.2790e-03, + 2DIAGNOSTIC, 8, -5.994460344426e-01, 1.797693134862e+308, 3.3296e-01, 2.5060e-03, + 2DIAGNOSTIC, 9, -5.999176418590e-01, 1.797693134862e+308, 3.3544e-01, 2.4781e-03, + 2DIAGNOSTIC, 10, -6.004483661425e-01, 1.056871393956e-03, 3.3924e-01, 3.7990e-03, + 2DIAGNOSTIC, 11, -6.004599396508e-01, 9.380657246014e-04, 3.4164e-01, 2.4030e-03, + 2DIAGNOSTIC, 12, -6.004607184497e-01, 7.172061388978e-04, 3.4433e-01, 2.6910e-03, + 2DIAGNOSTIC, 13, -6.004851861765e-01, 5.143264939463e-04, 3.4672e-01, 2.3830e-03, + 2DIAGNOSTIC, 14, -6.004834746686e-01, 3.611307781073e-04, 3.4949e-01, 2.7750e-03, + 2DIAGNOSTIC, 15, -6.005198853741e-01, 2.429623225626e-04, 3.5224e-01, 2.7480e-03, + 2DIAGNOSTIC, 16, -6.005568929747e-01, 1.330955679235e-04, 3.5498e-01, 2.7452e-03, + 2DIAGNOSTIC, 17, -6.019019625629e-01, 8.797865484029e-05, 3.5824e-01, 3.2530e-03, + 2DIAGNOSTIC, 18, -6.022470196512e-01, 9.929086058492e-05, 3.6065e-01, 2.4149e-03, + 2DIAGNOSTIC, 19, -6.023704900108e-01, 1.150369836648e-04, 3.6342e-01, 2.7721e-03, + 2DIAGNOSTIC, 20, -6.030973979480e-01, 1.490332903191e-04, 3.6827e-01, 4.8430e-03, + 2DIAGNOSTIC, 21, -6.031184011494e-01, 1.663400283172e-04, 3.7057e-01, 2.3019e-03, + 2DIAGNOSTIC, 22, -6.031915583509e-01, 1.679687778521e-04, 3.7288e-01, 2.3100e-03, + 2DIAGNOSTIC, 23, -6.033020802845e-01, 1.566575250525e-04, 3.7526e-01, 2.3851e-03, + 2DIAGNOSTIC, 24, -6.034338256491e-01, 1.345746556575e-04, 3.7768e-01, 2.4140e-03, + 2DIAGNOSTIC, 25, -6.036841547041e-01, 1.073240320708e-04, 3.8006e-01, 2.3808e-03, + 2DIAGNOSTIC, 26, -6.040359435359e-01, 7.857592274983e-05, 3.8245e-01, 2.3880e-03, + 2DIAGNOSTIC, 27, -6.046043069038e-01, 7.820309770768e-05, 3.8507e-01, 2.6190e-03, + 2DIAGNOSTIC, 28, -6.051452628969e-01, 8.549320034389e-05, 3.8776e-01, 2.6970e-03, + 2DIAGNOSTIC, 29, -6.051636455703e-01, 8.620605303390e-05, 3.9052e-01, 2.7580e-03, + 2DIAGNOSTIC, 30, -6.052089659327e-01, 9.118808705760e-05, 3.9332e-01, 2.7969e-03, + 2DIAGNOSTIC, 31, -6.052654562167e-01, 8.850196974584e-05, 3.9581e-01, 2.4941e-03, + 2DIAGNOSTIC, 32, -6.052982001825e-01, 7.909833120728e-05, 3.9823e-01, 2.4230e-03, + 2DIAGNOSTIC, 33, -6.054073960751e-01, 6.592746028736e-05, 4.0166e-01, 3.4230e-03, + 2DIAGNOSTIC, 34, -6.054207836361e-01, 4.941788016714e-05, 4.0405e-01, 2.3930e-03, + 2DIAGNOSTIC, 35, -6.054347032795e-01, 3.290365649549e-05, 4.0671e-01, 2.6631e-03, + 2DIAGNOSTIC, 36, -6.054349885952e-01, 1.877390125508e-05, 4.0943e-01, 2.7208e-03, + 2DIAGNOSTIC, 37, -6.055610115459e-01, 1.238416343150e-05, 4.1212e-01, 2.6829e-03, + 2DIAGNOSTIC, 38, -6.058368225421e-01, 1.533628503576e-05, 4.1446e-01, 2.3410e-03, + 2DIAGNOSTIC, 39, -6.071126863073e-01, 3.234308634628e-05, 4.1714e-01, 2.6851e-03, + 2DIAGNOSTIC, 40, -6.076246772923e-01, 5.170111322646e-05, 4.2086e-01, 3.7160e-03, + 2DIAGNOSTIC, 41, -6.075694959891e-01, 6.532590430202e-05, 4.2548e-01, 4.6179e-03, + 2DIAGNOSTIC, 42, -6.075927541755e-01, 7.301804364418e-05, 4.2864e-01, 3.1610e-03, + 2DIAGNOSTIC, 43, -6.076165117715e-01, 7.487231119910e-05, 4.3117e-01, 2.5280e-03, + 2DIAGNOSTIC, 44, -6.076556900762e-01, 6.986205368885e-05, 4.3367e-01, 2.5029e-03, + 2DIAGNOSTIC, 45, -6.076900604093e-01, 5.889148403294e-05, 4.3712e-01, 3.4502e-03, + 2DIAGNOSTIC, 46, -6.076752067488e-01, 4.288467555271e-05, 4.3980e-01, 2.6829e-03, + 2DIAGNOSTIC, 47, -6.076279204655e-01, 2.448755534600e-05, 4.4223e-01, 2.4259e-03, + 2DIAGNOSTIC, 48, -6.076437385821e-01, 7.151323079237e-06, 4.4494e-01, 2.7089e-03, + 2DIAGNOSTIC, 49, -6.076266531104e-01, 1.853067294767e-06, 4.4756e-01, 2.6190e-03, + 2DIAGNOSTIC, 50, -6.076638964679e-01, 1.845109966914e-06, 4.5022e-01, 2.6610e-03, + 2DIAGNOSTIC, 51, -6.077398735368e-01, 1.909953284238e-06, 4.5382e-01, 3.6061e-03, + 2DIAGNOSTIC, 52, -6.078029970464e-01, 2.624327539336e-06, 4.5733e-01, 3.5100e-03, + 2DIAGNOSTIC, 53, -6.078269485873e-01, 3.531764749057e-06, 4.6087e-01, 3.5360e-03, + 2DIAGNOSTIC, 54, -6.080943314539e-01, 6.793840717660e-06, 4.6525e-01, 4.3781e-03, + 2DIAGNOSTIC, 55, -6.081490900231e-01, 1.004372979522e-05, 4.6812e-01, 2.8760e-03, + 2DIAGNOSTIC, 56, -6.082439955728e-01, 1.295491672918e-05, 4.7221e-01, 4.0839e-03, + 2DIAGNOSTIC, 57, -6.083136182305e-01, 1.476454159423e-05, 4.7498e-01, 2.7690e-03, + 2DIAGNOSTIC, 58, -6.082653876377e-01, 1.488782783417e-05, 4.7854e-01, 3.5651e-03, + 2DIAGNOSTIC, 59, -6.082668905880e-01, 1.350301294739e-05, 4.8175e-01, 3.2110e-03, + 2DIAGNOSTIC, 60, -6.082693052023e-01, 1.120742701145e-05, 4.8503e-01, 3.2759e-03, + 2DIAGNOSTIC, 61, -6.082806129908e-01, 8.633772180838e-06, 4.8831e-01, 3.2840e-03, + 2DIAGNOSTIC, 62, -6.083379793608e-01, 6.291694907477e-06, 4.9151e-01, 3.1941e-03, + 2DIAGNOSTIC, 63, -6.084462260949e-01, 4.408278452057e-06, 4.9419e-01, 2.6820e-03, + 2DIAGNOSTIC, 64, -6.089359764962e-01, 7.764047901655e-06, 4.9760e-01, 3.4151e-03, + 2DIAGNOSTIC, 65, -6.090594293257e-01, 1.150080988956e-05, 5.0172e-01, 4.1120e-03, + 2DIAGNOSTIC, 66, -6.090742324855e-01, 1.485325659029e-05, 5.0482e-01, 3.1080e-03, + 2DIAGNOSTIC, 67, -6.091107842653e-01, 1.752950026915e-05, 5.0765e-01, 2.8288e-03, + 2DIAGNOSTIC, 68, -6.090892994747e-01, 1.798343440767e-05, 5.1036e-01, 2.7030e-03, + 2DIAGNOSTIC, 69, -6.091084334374e-01, 1.683023298016e-05, 5.1317e-01, 2.8119e-03, + 2DIAGNOSTIC, 70, -6.091678892494e-01, 1.453412947200e-05, 5.1600e-01, 2.8341e-03, + 2DIAGNOSTIC, 71, -6.095490966936e-01, 1.357731088436e-05, 5.1922e-01, 3.2201e-03, + 2DIAGNOSTIC, 72, -6.096044852854e-01, 1.208050399666e-05, 5.2286e-01, 3.6371e-03, + 2DIAGNOSTIC, 73, -6.096301689830e-01, 1.031214572251e-05, 5.2552e-01, 2.6569e-03, + 2DIAGNOSTIC, 74, -6.099068058515e-01, 1.252439505218e-05, 5.2884e-01, 3.3250e-03, + 2DIAGNOSTIC, 75, -6.099551274443e-01, 1.452667067738e-05, 5.3148e-01, 2.6369e-03, + 2DIAGNOSTIC, 76, -6.099688205490e-01, 1.525723267588e-05, 5.3454e-01, 3.0639e-03, + 2DIAGNOSTIC, 77, -6.100176008104e-01, 1.508181876258e-05, 5.3750e-01, 2.9609e-03, + 2DIAGNOSTIC, 78, -6.100966680739e-01, 1.386734490898e-05, 5.4210e-01, 4.5979e-03, + 2DIAGNOSTIC, 79, -6.100817185515e-01, 1.139387589938e-05, 5.4467e-01, 2.5680e-03, + 2DIAGNOSTIC, 80, -6.102060768792e-01, 8.944209502360e-06, 5.4730e-01, 2.6309e-03, + 2DIAGNOSTIC, 81, -6.103393541256e-01, 8.713739737307e-06, 5.5000e-01, 2.7032e-03, + 2DIAGNOSTIC, 82, -6.104375352871e-01, 8.562622478838e-06, 5.5266e-01, 2.6622e-03, + 2DIAGNOSTIC, 83, -6.104716776567e-01, 7.920042676982e-06, 5.5517e-01, 2.5010e-03, + 2DIAGNOSTIC, 84, -6.104759203799e-01, 8.142484353843e-06, 5.5794e-01, 2.7761e-03, + 2DIAGNOSTIC, 85, -6.104829341060e-01, 7.919689544434e-06, 5.6201e-01, 4.0731e-03, + 2DIAGNOSTIC, 86, -6.104835824518e-01, 7.032890280700e-06, 5.6447e-01, 2.4559e-03, + 2DIAGNOSTIC, 87, -6.104850006946e-01, 5.779642833348e-06, 5.6703e-01, 2.5551e-03, + 2DIAGNOSTIC, 88, -6.104858297113e-01, 4.475084979550e-06, 5.6964e-01, 2.6100e-03, + 2DIAGNOSTIC, 89, -6.104862263174e-01, 2.722750831229e-06, 5.7234e-01, 2.7061e-03, + 2DIAGNOSTIC, 90, -6.104870922667e-01, 1.422469257372e-06, 5.7537e-01, 3.0241e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.697105994669e-01, 1.797693134862e+308, 6.4573e-01, 7.0365e-02, + 2DIAGNOSTIC, 2, -4.703427925651e-01, 1.797693134862e+308, 6.5864e-01, 1.2912e-02, + 2DIAGNOSTIC, 3, -4.710358264514e-01, 1.797693134862e+308, 6.7188e-01, 1.3237e-02, + 2DIAGNOSTIC, 4, -4.715888087504e-01, 1.797693134862e+308, 6.8495e-01, 1.3072e-02, + 2DIAGNOSTIC, 5, -4.721984083547e-01, 1.797693134862e+308, 6.9930e-01, 1.4350e-02, + 2DIAGNOSTIC, 6, -4.733012531329e-01, 1.797693134862e+308, 7.1324e-01, 1.3941e-02, + 2DIAGNOSTIC, 7, -4.751863932502e-01, 1.797693134862e+308, 7.2680e-01, 1.3561e-02, + 2DIAGNOSTIC, 8, -4.765229423883e-01, 1.797693134862e+308, 7.4225e-01, 1.5448e-02, + 2DIAGNOSTIC, 9, -4.781141644950e-01, 1.797693134862e+308, 7.6115e-01, 1.8894e-02, + 2DIAGNOSTIC, 10, -4.785363549162e-01, 1.283006087978e-03, 7.7573e-01, 1.4588e-02, + 2DIAGNOSTIC, 11, -4.790922614241e-01, 1.213379064466e-03, 7.9015e-01, 1.4413e-02, + 2DIAGNOSTIC, 12, -4.803601667799e-01, 1.140146613628e-03, 8.0392e-01, 1.3771e-02, + 2DIAGNOSTIC, 13, -4.817740313961e-01, 1.070153067001e-03, 8.2667e-01, 2.2756e-02, + 2DIAGNOSTIC, 14, -4.819291154978e-01, 9.426215528383e-04, 8.4018e-01, 1.3510e-02, + 2DIAGNOSTIC, 15, -4.824305994674e-01, 7.919237835915e-04, 8.5616e-01, 1.5974e-02, + 2DIAGNOSTIC, 16, -4.825995389251e-01, 6.346844743604e-04, 8.7067e-01, 1.4511e-02, + 2DIAGNOSTIC, 17, -4.826166080539e-01, 5.033381309548e-04, 8.8624e-01, 1.5573e-02, + 2DIAGNOSTIC, 18, -4.826180051206e-01, 3.830394831896e-04, 8.9980e-01, 1.3559e-02, + 2DIAGNOSTIC, 19, -4.826226154702e-01, 2.904846402310e-04, 9.1320e-01, 1.3399e-02, + 2DIAGNOSTIC, 20, -4.826381602811e-01, 1.938611387100e-04, 9.2749e-01, 1.4292e-02, + 2DIAGNOSTIC, 21, -4.826582476261e-01, 1.043149350927e-04, 9.4041e-01, 1.2915e-02, + 2DIAGNOSTIC, 22, -4.826928831359e-01, 4.772260066616e-05, 9.5324e-01, 1.2832e-02, + 2DIAGNOSTIC, 23, -4.827536707814e-01, 2.995524374617e-05, 9.6597e-01, 1.2729e-02, + 2DIAGNOSTIC, 24, -4.827816885927e-01, 1.520912876191e-05, 9.8772e-01, 2.1756e-02, + 2DIAGNOSTIC, 25, -4.828733435900e-01, 1.432848890073e-05, 1.0104e+00, 2.2723e-02, + 2DIAGNOSTIC, 26, -4.828811390885e-01, 1.627288875101e-05, 1.0240e+00, 1.3529e-02, + 2DIAGNOSTIC, 27, -4.829351159882e-01, 1.823266458102e-05, 1.0370e+00, 1.2985e-02, + 2DIAGNOSTIC, 28, -4.830147876000e-01, 2.014342120193e-05, 1.0496e+00, 1.2634e-02, + 2DIAGNOSTIC, 29, -4.830368516040e-01, 2.062824094513e-05, 1.0632e+00, 1.3607e-02, + 2DIAGNOSTIC, 30, -4.830694996718e-01, 2.019428156850e-05, 1.0754e+00, 1.2178e-02, + 2DIAGNOSTIC, 31, -4.832325479866e-01, 2.148192921379e-05, 1.0900e+00, 1.4590e-02, + 2DIAGNOSTIC, 32, -4.833848680531e-01, 2.411873333864e-05, 1.1058e+00, 1.5815e-02, + 2DIAGNOSTIC, 33, -4.835199059834e-01, 2.786202757356e-05, 1.1179e+00, 1.2126e-02, + 2DIAGNOSTIC, 34, -4.837362698987e-01, 3.305530547324e-05, 1.1294e+00, 1.1465e-02, + 2DIAGNOSTIC, 35, -4.842567044606e-01, 4.522398964756e-05, 1.1410e+00, 1.1598e-02, + 2DIAGNOSTIC, 36, -4.844577168968e-01, 5.570454465957e-05, 1.1581e+00, 1.7119e-02, + 2DIAGNOSTIC, 37, -4.845598065657e-01, 6.287567530742e-05, 1.1707e+00, 1.2590e-02, + 2DIAGNOSTIC, 38, -4.846038214332e-01, 6.579204151554e-05, 1.1825e+00, 1.1812e-02, + 2DIAGNOSTIC, 39, -4.846385862537e-01, 6.324044488901e-05, 1.1932e+00, 1.0692e-02, + 2DIAGNOSTIC, 40, -4.846618200674e-01, 5.554737331516e-05, 1.2045e+00, 1.1326e-02, + 2DIAGNOSTIC, 41, -4.847158298083e-01, 4.607469935452e-05, 1.2162e+00, 1.1643e-02, + 2DIAGNOSTIC, 42, -4.847474904894e-01, 3.537667801949e-05, 1.2280e+00, 1.1827e-02, + 2DIAGNOSTIC, 43, -4.848496643729e-01, 2.516433261545e-05, 1.2431e+00, 1.5114e-02, + 2DIAGNOSTIC, 44, -4.849607982606e-01, 1.730477487549e-05, 1.2555e+00, 1.2373e-02, + 2DIAGNOSTIC, 45, -4.849847117959e-01, 1.528001385070e-05, 1.2690e+00, 1.3554e-02, + 2DIAGNOSTIC, 46, -4.850021951434e-01, 1.474775515610e-05, 1.2822e+00, 1.3191e-02, + 2DIAGNOSTIC, 47, -4.850090613244e-01, 1.426259622584e-05, 1.2945e+00, 1.2260e-02, + 2DIAGNOSTIC, 48, -4.850610416883e-01, 1.365728432218e-05, 1.3068e+00, 1.2309e-02, + 2DIAGNOSTIC, 49, -4.856911050254e-01, 1.980584636936e-05, 1.3219e+00, 1.5070e-02, + 2DIAGNOSTIC, 50, -4.858148424493e-01, 2.539704403921e-05, 1.3370e+00, 1.5171e-02, + 2DIAGNOSTIC, 51, -4.858602937556e-01, 2.962094223045e-05, 1.3496e+00, 1.2550e-02, + 2DIAGNOSTIC, 52, -4.860028722064e-01, 3.297772338058e-05, 1.3649e+00, 1.5320e-02, + 2DIAGNOSTIC, 53, -4.860660911531e-01, 3.486003222957e-05, 1.3769e+00, 1.2050e-02, + 2DIAGNOSTIC, 54, -4.861084724758e-01, 3.494058230365e-05, 1.3888e+00, 1.1882e-02, + 2DIAGNOSTIC, 55, -4.861698450334e-01, 3.260964003088e-05, 1.4008e+00, 1.1946e-02, + 2DIAGNOSTIC, 56, -4.862197186627e-01, 2.808743691984e-05, 1.4182e+00, 1.7392e-02, + 2DIAGNOSTIC, 57, -4.862282120775e-01, 2.129538371110e-05, 1.4289e+00, 1.0728e-02, + 2DIAGNOSTIC, 58, -4.862549263227e-01, 1.338152437345e-05, 1.4397e+00, 1.0789e-02, + 2DIAGNOSTIC, 59, -4.862784517212e-01, 1.101674186860e-05, 1.4509e+00, 1.1218e-02, + 2DIAGNOSTIC, 60, -4.863029288465e-01, 9.178458907747e-06, 1.4620e+00, 1.1096e-02, + 2DIAGNOSTIC, 61, -4.863508209709e-01, 7.435067122794e-06, 1.4747e+00, 1.2678e-02, + 2DIAGNOSTIC, 62, -4.864325125456e-01, 7.200999058096e-06, 1.4860e+00, 1.1282e-02, + 2DIAGNOSTIC, 63, -4.864939743282e-01, 7.481952161909e-06, 1.4983e+00, 1.2309e-02, + 2DIAGNOSTIC, 64, -4.865275145411e-01, 7.766658876574e-06, 1.5107e+00, 1.2445e-02, + 2DIAGNOSTIC, 65, -4.865312962911e-01, 7.928990392793e-06, 1.5219e+00, 1.1221e-02, + 2DIAGNOSTIC, 66, -4.865636437355e-01, 8.108607851519e-06, 1.5339e+00, 1.1936e-02, + 2DIAGNOSTIC, 67, -4.865840750926e-01, 7.783196810711e-06, 1.5456e+00, 1.1698e-02, + 2DIAGNOSTIC, 68, -4.866084797569e-01, 7.195646214233e-06, 1.5558e+00, 1.0262e-02, + 2DIAGNOSTIC, 69, -4.867128927210e-01, 7.072518381931e-06, 1.5661e+00, 1.0238e-02, + 2DIAGNOSTIC, 70, -4.879202198550e-01, 1.665444729165e-05, 1.5806e+00, 1.4500e-02, + 2DIAGNOSTIC, 71, -4.882786332883e-01, 2.748261806856e-05, 1.5995e+00, 1.8972e-02, + 2DIAGNOSTIC, 72, -4.882971514252e-01, 3.625256220801e-05, 1.6099e+00, 1.0336e-02, + 2DIAGNOSTIC, 73, -4.883417666711e-01, 4.235935263866e-05, 1.6205e+00, 1.0603e-02, + 2DIAGNOSTIC, 74, -4.884162030289e-01, 4.510519761112e-05, 1.6313e+00, 1.0841e-02, + 2DIAGNOSTIC, 75, -4.884843557729e-01, 4.384473803973e-05, 1.6422e+00, 1.0886e-02, + 2DIAGNOSTIC, 76, -4.885081132839e-01, 3.878753464560e-05, 1.6528e+00, 1.0641e-02, + 2DIAGNOSTIC, 77, -4.885408708624e-01, 3.071677542354e-05, 1.6647e+00, 1.1831e-02, + 2DIAGNOSTIC, 78, -4.885636502095e-01, 2.041173213267e-05, 1.6865e+00, 2.1859e-02, + 2DIAGNOSTIC, 79, -4.885632416990e-01, 8.978080821681e-06, 1.6989e+00, 1.2383e-02, + 2DIAGNOSTIC, 80, -4.885601673792e-01, 5.778300572475e-06, 1.7110e+00, 1.2122e-02, + 2DIAGNOSTIC, 81, -4.885587097809e-01, 4.734999373477e-06, 1.7216e+00, 1.0544e-02, + 2DIAGNOSTIC, 82, -4.885590684037e-01, 3.433527049065e-06, 1.7319e+00, 1.0300e-02, + 2DIAGNOSTIC, 83, -4.885595325853e-01, 2.178205708929e-06, 1.7436e+00, 1.1705e-02, + 2DIAGNOSTIC, 84, -4.885600861678e-01, 1.295734648061e-06, 1.7560e+00, 1.2372e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.103547540587e-01, 1.797693134862e+308, 1.9337e+00, 1.7778e-01, + Elapsed time (stage 0): 1.9661e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.230655138952e-01, 1.797693134862e+308, 3.5859e-02, 3.5858e-02, + 2DIAGNOSTIC, 2, -9.265782388213e-01, 1.797693134862e+308, 3.7068e-02, 1.2090e-03, + 2DIAGNOSTIC, 3, -9.319688399516e-01, 1.797693134862e+308, 3.8298e-02, 1.2300e-03, + 2DIAGNOSTIC, 4, -9.420950458083e-01, 1.797693134862e+308, 3.9530e-02, 1.2319e-03, + 2DIAGNOSTIC, 5, -9.505981991215e-01, 1.797693134862e+308, 4.0730e-02, 1.2000e-03, + 2DIAGNOSTIC, 6, -9.539285108852e-01, 1.797693134862e+308, 4.2127e-02, 1.3969e-03, + 2DIAGNOSTIC, 7, -9.687407529363e-01, 1.797693134862e+308, 4.3362e-02, 1.2350e-03, + 2DIAGNOSTIC, 8, -9.735084313424e-01, 1.797693134862e+308, 4.4993e-02, 1.6310e-03, + 2DIAGNOSTIC, 9, -9.927468902370e-01, 1.797693134862e+308, 4.6396e-02, 1.4029e-03, + 2DIAGNOSTIC, 10, -9.976154984557e-01, 5.190701344094e-03, 4.7966e-02, 1.5709e-03, + 2DIAGNOSTIC, 11, -9.998976047045e-01, 4.830285704267e-03, 4.9329e-02, 1.3621e-03, + 2DIAGNOSTIC, 12, -1.007998529530e+00, 4.386570395478e-03, 5.0700e-02, 1.3719e-03, + 2DIAGNOSTIC, 13, -1.019399911793e+00, 3.984834581227e-03, 5.2490e-02, 1.7900e-03, + 2DIAGNOSTIC, 14, -1.022972583057e+00, 3.557386850857e-03, 5.3843e-02, 1.3530e-03, + 2DIAGNOSTIC, 15, -1.032475804542e+00, 3.217083996179e-03, 5.5256e-02, 1.4122e-03, + 2DIAGNOSTIC, 16, -1.050156219361e+00, 3.002054987238e-03, 5.7628e-02, 2.3720e-03, + 2DIAGNOSTIC, 17, -1.055405125563e+00, 2.872694497482e-03, 5.9005e-02, 1.3771e-03, + 2DIAGNOSTIC, 18, -1.061725634510e+00, 2.662993572230e-03, 6.0577e-02, 1.5719e-03, + 2DIAGNOSTIC, 19, -1.065231236234e+00, 2.574044443211e-03, 6.2135e-02, 1.5581e-03, + 2DIAGNOSTIC, 20, -1.066019859523e+00, 2.337528531635e-03, 6.3741e-02, 1.6060e-03, + 2DIAGNOSTIC, 21, -1.067390017749e+00, 1.953791370343e-03, 6.5306e-02, 1.5650e-03, + 2DIAGNOSTIC, 22, -1.069784652584e+00, 1.556777930062e-03, 6.7081e-02, 1.7750e-03, + 2DIAGNOSTIC, 23, -1.070474959409e+00, 1.201277037523e-03, 6.8682e-02, 1.6010e-03, + 2DIAGNOSTIC, 24, -1.071874851294e+00, 8.229993736066e-04, 7.0016e-02, 1.3340e-03, + 2DIAGNOSTIC, 25, -1.072804695025e+00, 5.129339124541e-04, 7.1598e-02, 1.5821e-03, + 2DIAGNOSTIC, 26, -1.073191267264e+00, 3.742849537209e-04, 7.2951e-02, 1.3530e-03, + 2DIAGNOSTIC, 27, -1.073791963110e+00, 2.704357095724e-04, 7.4313e-02, 1.3621e-03, + 2DIAGNOSTIC, 28, -1.074350436730e+00, 2.167096579757e-04, 7.6321e-02, 2.0082e-03, + 2DIAGNOSTIC, 29, -1.074424378185e+00, 1.809585478115e-04, 7.7689e-02, 1.3680e-03, + 2DIAGNOSTIC, 30, -1.074805264500e+00, 1.415125278972e-04, 7.9030e-02, 1.3409e-03, + 2DIAGNOSTIC, 31, -1.075087998532e+00, 1.058155953677e-04, 8.0678e-02, 1.6479e-03, + 2DIAGNOSTIC, 32, -1.075437857702e+00, 8.628481626075e-05, 8.3404e-02, 2.7261e-03, + 2DIAGNOSTIC, 33, -1.076382123637e+00, 7.333194186004e-05, 8.6021e-02, 2.6171e-03, + 2DIAGNOSTIC, 34, -1.075156708054e+00, 5.545460434592e-05, 8.9020e-02, 2.9991e-03, + 2DIAGNOSTIC, 35, -1.073536161480e+00, 2.842074444657e-05, 9.0622e-02, 1.6019e-03, + 2DIAGNOSTIC, 36, -1.073996072219e+00, 7.054254480419e-06, 9.2007e-02, 1.3850e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.148931049203e-01, 1.797693134862e+308, 1.3694e-01, 4.4936e-02, + 2DIAGNOSTIC, 2, -7.145954502083e-01, 1.797693134862e+308, 1.4036e-01, 3.4151e-03, + 2DIAGNOSTIC, 3, -7.159479007765e-01, 1.797693134862e+308, 1.4363e-01, 3.2730e-03, + 2DIAGNOSTIC, 4, -7.178793094599e-01, 1.797693134862e+308, 1.4633e-01, 2.6970e-03, + 2DIAGNOSTIC, 5, -7.202178419172e-01, 1.797693134862e+308, 1.4875e-01, 2.4240e-03, + 2DIAGNOSTIC, 6, -7.229145530069e-01, 1.797693134862e+308, 1.5102e-01, 2.2628e-03, + 2DIAGNOSTIC, 7, -7.248512342552e-01, 1.797693134862e+308, 1.5319e-01, 2.1720e-03, + 2DIAGNOSTIC, 8, -7.363754228981e-01, 1.797693134862e+308, 1.5570e-01, 2.5160e-03, + 2DIAGNOSTIC, 9, -7.391428372136e-01, 1.797693134862e+308, 1.5825e-01, 2.5489e-03, + 2DIAGNOSTIC, 10, -7.418671188032e-01, 2.609073423350e-03, 1.6100e-01, 2.7490e-03, + 2DIAGNOSTIC, 11, -7.443020374380e-01, 2.674741873571e-03, 1.6383e-01, 2.8300e-03, + 2DIAGNOSTIC, 12, -7.466900461272e-01, 2.555638424205e-03, 1.6631e-01, 2.4800e-03, + 2DIAGNOSTIC, 13, -7.484809505814e-01, 2.313273272215e-03, 1.6972e-01, 3.4080e-03, + 2DIAGNOSTIC, 14, -7.491879343947e-01, 1.967576482701e-03, 1.7221e-01, 2.4889e-03, + 2DIAGNOSTIC, 15, -7.502219677422e-01, 1.579811451657e-03, 1.7538e-01, 3.1729e-03, + 2DIAGNOSTIC, 16, -7.516663499230e-01, 1.199130159360e-03, 1.7823e-01, 2.8501e-03, + 2DIAGNOSTIC, 17, -7.524498639458e-01, 8.086371708880e-04, 1.8113e-01, 2.8980e-03, + 2DIAGNOSTIC, 18, -7.527687419986e-01, 6.414271942090e-04, 1.8377e-01, 2.6441e-03, + 2DIAGNOSTIC, 19, -7.530101798558e-01, 4.939147464078e-04, 1.8721e-01, 3.4389e-03, + 2DIAGNOSTIC, 20, -7.531022563506e-01, 3.695059310774e-04, 1.8991e-01, 2.6958e-03, + 2DIAGNOSTIC, 21, -7.531166674763e-01, 2.667276432529e-04, 1.9373e-01, 3.8259e-03, + 2DIAGNOSTIC, 22, -7.531286270181e-01, 1.899721612162e-04, 1.9659e-01, 2.8520e-03, + 2DIAGNOSTIC, 23, -7.530972440933e-01, 1.319222092475e-04, 1.9950e-01, 2.9130e-03, + 2DIAGNOSTIC, 24, -7.531363938128e-01, 7.844676322147e-05, 2.0301e-01, 3.5069e-03, + 2DIAGNOSTIC, 25, -7.532096972353e-01, 3.861391477439e-05, 2.0633e-01, 3.3219e-03, + 2DIAGNOSTIC, 26, -7.532908722917e-01, 2.063049256724e-05, 2.1014e-01, 3.8159e-03, + 2DIAGNOSTIC, 27, -7.533537024803e-01, 1.410790060868e-05, 2.1362e-01, 3.4761e-03, + 2DIAGNOSTIC, 28, -7.533553273614e-01, 1.115898375441e-05, 2.1657e-01, 2.9519e-03, + 2DIAGNOSTIC, 29, -7.533704587963e-01, 1.084496631888e-05, 2.1917e-01, 2.5971e-03, + 2DIAGNOSTIC, 30, -7.534018413973e-01, 1.118336046091e-05, 2.2206e-01, 2.8901e-03, + 2DIAGNOSTIC, 31, -7.534381950450e-01, 1.113679067177e-05, 2.2506e-01, 2.9981e-03, + 2DIAGNOSTIC, 32, -7.534712655526e-01, 1.068412987812e-05, 2.2757e-01, 2.5160e-03, + 2DIAGNOSTIC, 33, -7.534896118143e-01, 9.199705724702e-06, 2.3106e-01, 3.4859e-03, + 2DIAGNOSTIC, 34, -7.535229085254e-01, 7.837090544492e-06, 2.3458e-01, 3.5250e-03, + 2DIAGNOSTIC, 35, -7.535235776321e-01, 6.679096890248e-06, 2.3726e-01, 2.6760e-03, + 2DIAGNOSTIC, 36, -7.535272377003e-01, 5.920122676622e-06, 2.4187e-01, 4.6129e-03, + 2DIAGNOSTIC, 37, -7.535272408323e-01, 5.375918739177e-06, 2.4617e-01, 4.2949e-03, + 2DIAGNOSTIC, 38, -7.535272408679e-01, 4.448292655338e-06, 2.4974e-01, 3.5729e-03, + 2DIAGNOSTIC, 39, -7.535272408699e-01, 3.368721619792e-06, 2.5349e-01, 3.7479e-03, + 2DIAGNOSTIC, 40, -7.535272408700e-01, 2.395564101580e-06, 2.5714e-01, 3.6490e-03, + 2DIAGNOSTIC, 41, -7.535272408700e-01, 1.654177938144e-06, 2.6049e-01, 3.3538e-03, + 2DIAGNOSTIC, 42, -7.535272408700e-01, 1.164283674332e-06, 2.6323e-01, 2.7440e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.933362223625e-01, 1.797693134862e+308, 3.2654e-01, 6.3308e-02, + 2DIAGNOSTIC, 2, -5.936091841210e-01, 1.797693134862e+308, 3.3976e-01, 1.3219e-02, + 2DIAGNOSTIC, 3, -5.939418116646e-01, 1.797693134862e+308, 3.5314e-01, 1.3377e-02, + 2DIAGNOSTIC, 4, -5.943354935923e-01, 1.797693134862e+308, 3.6540e-01, 1.2257e-02, + 2DIAGNOSTIC, 5, -5.948107899450e-01, 1.797693134862e+308, 3.7787e-01, 1.2473e-02, + 2DIAGNOSTIC, 6, -5.952371254208e-01, 1.797693134862e+308, 3.9144e-01, 1.3574e-02, + 2DIAGNOSTIC, 7, -5.955081322586e-01, 1.797693134862e+308, 4.1237e-01, 2.0932e-02, + 2DIAGNOSTIC, 8, -5.955384519093e-01, 1.797693134862e+308, 4.2439e-01, 1.2013e-02, + 2DIAGNOSTIC, 9, -5.956213210976e-01, 1.797693134862e+308, 4.3629e-01, 1.1897e-02, + 2DIAGNOSTIC, 10, -5.957390656744e-01, 2.850919749584e-04, 4.4880e-01, 1.2517e-02, + 2DIAGNOSTIC, 11, -5.958945334694e-01, 2.262594243343e-04, 4.6103e-01, 1.2229e-02, + 2DIAGNOSTIC, 12, -5.960834183917e-01, 1.754041577542e-04, 4.7339e-01, 1.2355e-02, + 2DIAGNOSTIC, 13, -5.962501522355e-01, 1.350585216085e-04, 4.9013e-01, 1.6745e-02, + 2DIAGNOSTIC, 14, -5.962932168301e-01, 1.031370543828e-04, 5.0381e-01, 1.3679e-02, + 2DIAGNOSTIC, 15, -5.963271882410e-01, 8.224457276079e-05, 5.1618e-01, 1.2369e-02, + 2DIAGNOSTIC, 16, -5.964280665310e-01, 7.212657715155e-05, 5.3383e-01, 1.7647e-02, + 2DIAGNOSTIC, 17, -5.964505007589e-01, 6.486900075141e-05, 5.4675e-01, 1.2921e-02, + 2DIAGNOSTIC, 18, -5.965218323394e-01, 5.526940906284e-05, 5.5978e-01, 1.3033e-02, + 2DIAGNOSTIC, 19, -5.965723579468e-01, 4.507471665262e-05, 5.7271e-01, 1.2926e-02, + 2DIAGNOSTIC, 20, -5.966023200037e-01, 3.537419718234e-05, 5.8522e-01, 1.2516e-02, + 2DIAGNOSTIC, 21, -5.967339504721e-01, 2.989148491482e-05, 6.0085e-01, 1.5623e-02, + 2DIAGNOSTIC, 22, -5.967513387903e-01, 2.657399490191e-05, 6.1342e-01, 1.2579e-02, + 2DIAGNOSTIC, 23, -5.968322107138e-01, 2.634984347823e-05, 6.2615e-01, 1.2730e-02, + 2DIAGNOSTIC, 24, -5.971132465234e-01, 3.023425228744e-05, 6.4639e-01, 2.0241e-02, + 2DIAGNOSTIC, 25, -5.971676333275e-01, 3.259890389667e-05, 6.5858e-01, 1.2188e-02, + 2DIAGNOSTIC, 26, -5.972434725064e-01, 3.510983093979e-05, 6.7088e-01, 1.2298e-02, + 2DIAGNOSTIC, 27, -5.973324999721e-01, 3.622969429855e-05, 6.8349e-01, 1.2613e-02, + 2DIAGNOSTIC, 28, -5.974602684163e-01, 3.731727444876e-05, 6.9747e-01, 1.3976e-02, + 2DIAGNOSTIC, 29, -5.975825675547e-01, 3.766268683609e-05, 7.1775e-01, 2.0283e-02, + 2DIAGNOSTIC, 30, -5.975877525256e-01, 3.500697737516e-05, 7.3112e-01, 1.3365e-02, + 2DIAGNOSTIC, 31, -5.976072213701e-01, 3.173608194919e-05, 7.4516e-01, 1.4039e-02, + 2DIAGNOSTIC, 32, -5.976299974122e-01, 2.637650915410e-05, 7.5779e-01, 1.2638e-02, + 2DIAGNOSTIC, 33, -5.976380148347e-01, 2.008282627699e-05, 7.7609e-01, 1.8299e-02, + 2DIAGNOSTIC, 34, -5.976387884628e-01, 1.627654546874e-05, 7.9155e-01, 1.5453e-02, + 2DIAGNOSTIC, 35, -5.976383556349e-01, 1.197654999659e-05, 8.0653e-01, 1.4983e-02, + 2DIAGNOSTIC, 36, -5.976378261372e-01, 7.869953031842e-06, 8.2077e-01, 1.4243e-02, + 2DIAGNOSTIC, 37, -5.976373288163e-01, 4.428268147103e-06, 8.3380e-01, 1.3024e-02, + 2DIAGNOSTIC, 38, -5.976354723131e-01, 2.365357618547e-06, 8.4684e-01, 1.3047e-02, + 2DIAGNOSTIC, 39, -5.976361875933e-01, 1.771507722483e-06, 8.6065e-01, 1.3803e-02, + 2DIAGNOSTIC, 40, -5.976370578426e-01, 1.186182322969e-06, 8.7298e-01, 1.2330e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.008986712150e-01, 1.797693134862e+308, 1.0695e+00, 1.9656e-01, + Elapsed time (stage 1): 1.0898e+00 + + +Total elapsed time: 3.0566e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:28:14 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 36 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 97 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 85.63% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 85.63% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[20265 10593 9532 3136 11164 0 0 0 2567 1530 998 1081 + 228 1477 7719 293 6610 1046 1497 0 0 222 0 0 + 0 0 446 0 0 0 0 0 0 0 0 0] +[233284 95917 93334 10633 21545 11756 11397 7106 6115 6816 + 5028 2243 3198 1450 256 1226 1689 656 236 1254 + 669 1082 275 216 335 334 0 344 0 257 + 0 523 267 529 0 0] +[11220 0 13585 0 11657 0 0 8813 0 244 8417 12585 + 0 13288 221 445 0 10356 0 9546 3127 0 12164 615 + 0 18715 0 0 0 0 0 0 5674 0 0 0] +[ 202 478 180000 2126 304 0 826 0 0 8978 + 386 179218 10947 899 0 15681 723 598 0 0 + 354 3935 173267 826 1498 661 10577 10255 4666 1407 + 1329 0 611 275 571 361] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:37:53 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:37:59 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:41 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:41 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:41 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:53 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:56 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC003 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:42:30 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:42:57 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:44:58 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:44:59 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:46:16 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:46:17 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55f1fe399d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [86.8977, 111.949, -133.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f1fe210730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc5c44fd010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x55f1fe39d020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.051, 60.8682, -115.329] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f1fe3a30c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc5c0e3e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55f1fe3b3840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [86.8977, 111.949, -133.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f1fe39f890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc5bba36010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x55f1fe3b73e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.051, 60.8682, -115.329] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f1fe3a6130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc5b8377010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.710997564376e-01, 1.797693134862e+308, 2.5181e-01, 2.5181e-01, + 2DIAGNOSTIC, 2, -4.721689105429e-01, 1.797693134862e+308, 2.5313e-01, 1.3218e-03, + 2DIAGNOSTIC, 3, -4.734239683843e-01, 1.797693134862e+308, 2.5467e-01, 1.5378e-03, + 2DIAGNOSTIC, 4, -4.758902983314e-01, 1.797693134862e+308, 2.5605e-01, 1.3890e-03, + 2DIAGNOSTIC, 5, -4.811171378408e-01, 1.797693134862e+308, 2.5744e-01, 1.3831e-03, + 2DIAGNOSTIC, 6, -4.849990533198e-01, 1.797693134862e+308, 2.5911e-01, 1.6761e-03, + 2DIAGNOSTIC, 7, -4.880199180323e-01, 1.797693134862e+308, 2.6054e-01, 1.4300e-03, + 2DIAGNOSTIC, 8, -4.886688019438e-01, 1.797693134862e+308, 2.6237e-01, 1.8270e-03, + 2DIAGNOSTIC, 9, -4.974347828996e-01, 1.797693134862e+308, 2.6440e-01, 2.0339e-03, + 2DIAGNOSTIC, 10, -5.209205528012e-01, 5.208630117600e-03, 2.6644e-01, 2.0318e-03, + 2DIAGNOSTIC, 11, -5.340451995119e-01, 6.465868620065e-03, 2.6863e-01, 2.1901e-03, + 2DIAGNOSTIC, 12, -5.490755534508e-01, 7.677298987357e-03, 2.7058e-01, 1.9562e-03, + 2DIAGNOSTIC, 13, -5.652396921834e-01, 8.742849395777e-03, 2.7253e-01, 1.9472e-03, + 2DIAGNOSTIC, 14, -5.841586006959e-01, 9.671015060658e-03, 2.7428e-01, 1.7538e-03, + 2DIAGNOSTIC, 15, -5.887863228642e-01, 9.919385741430e-03, 2.7602e-01, 1.7321e-03, + 2DIAGNOSTIC, 16, -5.817719820415e-01, 9.133431785790e-03, 2.7873e-01, 2.7139e-03, + 2DIAGNOSTIC, 17, -5.832938199343e-01, 7.782874873914e-03, 2.8058e-01, 1.8508e-03, + 2DIAGNOSTIC, 18, -5.838936889869e-01, 5.916582088450e-03, 2.8251e-01, 1.9329e-03, + 2DIAGNOSTIC, 19, -5.911553270102e-01, 4.153247414277e-03, 2.8429e-01, 1.7729e-03, + 2DIAGNOSTIC, 20, -5.916705605452e-01, 2.839879459627e-03, 2.8574e-01, 1.4560e-03, + 2DIAGNOSTIC, 21, -5.929333695382e-01, 1.773640383325e-03, 2.8772e-01, 1.9732e-03, + 2DIAGNOSTIC, 22, -5.934838435797e-01, 1.023708332296e-03, 2.8946e-01, 1.7469e-03, + 2DIAGNOSTIC, 23, -5.939684396692e-01, 6.178221738872e-04, 2.9126e-01, 1.8001e-03, + 2DIAGNOSTIC, 24, -5.951033888032e-01, 6.238637763581e-04, 2.9333e-01, 2.0700e-03, + 2DIAGNOSTIC, 25, -5.946195650769e-01, 6.615072258104e-04, 2.9534e-01, 2.0041e-03, + 2DIAGNOSTIC, 26, -5.952619332943e-01, 5.081658637041e-04, 2.9701e-01, 1.6711e-03, + 2DIAGNOSTIC, 27, -5.957846377800e-01, 3.600456472499e-04, 2.9877e-01, 1.7660e-03, + 2DIAGNOSTIC, 28, -5.967080379390e-01, 2.139418899940e-04, 3.0049e-01, 1.7200e-03, + 2DIAGNOSTIC, 29, -6.025296928470e-01, 2.912411620982e-04, 3.0329e-01, 2.7950e-03, + 2DIAGNOSTIC, 30, -6.047028097374e-01, 3.787743436088e-04, 3.0513e-01, 1.8389e-03, + 2DIAGNOSTIC, 31, -6.051198398729e-01, 4.526325510264e-04, 3.0709e-01, 1.9591e-03, + 2DIAGNOSTIC, 32, -6.069510152991e-01, 5.181925008519e-04, 3.0898e-01, 1.8928e-03, + 2DIAGNOSTIC, 33, -6.078307786265e-01, 5.503452930213e-04, 3.1065e-01, 1.6730e-03, + 2DIAGNOSTIC, 34, -6.095272168840e-01, 5.695953758453e-04, 3.1276e-01, 2.1081e-03, + 2DIAGNOSTIC, 35, -6.101306154553e-01, 5.345324708086e-04, 3.1541e-01, 2.6498e-03, + 2DIAGNOSTIC, 36, -6.102141560929e-01, 4.623876748942e-04, 3.1706e-01, 1.6510e-03, + 2DIAGNOSTIC, 37, -6.109016014952e-01, 3.681902089374e-04, 3.1871e-01, 1.6470e-03, + 2DIAGNOSTIC, 38, -6.113421260040e-01, 2.602665850015e-04, 3.2032e-01, 1.6069e-03, + 2DIAGNOSTIC, 39, -6.116210287954e-01, 2.114382344148e-04, 3.2194e-01, 1.6251e-03, + 2DIAGNOSTIC, 40, -6.125307306234e-01, 1.840530578741e-04, 3.2384e-01, 1.9031e-03, + 2DIAGNOSTIC, 41, -6.128740767481e-01, 1.495021994142e-04, 3.2548e-01, 1.6398e-03, + 2DIAGNOSTIC, 42, -6.138904612314e-01, 1.363861067707e-04, 3.2712e-01, 1.6341e-03, + 2DIAGNOSTIC, 43, -6.173596212667e-01, 1.606957852744e-04, 3.2871e-01, 1.5900e-03, + 2DIAGNOSTIC, 44, -6.480749241432e-01, 5.333697136908e-04, 3.3067e-01, 1.9600e-03, + 2DIAGNOSTIC, 45, -7.388276381696e-01, 1.827037265826e-03, 3.3312e-01, 2.4550e-03, + 2DIAGNOSTIC, 46, -7.573721397829e-01, 3.048501880352e-03, 3.3476e-01, 1.6360e-03, + 2DIAGNOSTIC, 47, -7.874117830377e-01, 4.237262178119e-03, 3.3636e-01, 1.6022e-03, + 2DIAGNOSTIC, 48, -8.210476335592e-01, 5.300393212340e-03, 3.3833e-01, 1.9670e-03, + 2DIAGNOSTIC, 49, -8.245034090735e-01, 5.824069952120e-03, 3.3996e-01, 1.6351e-03, + 2DIAGNOSTIC, 50, -8.328143696181e-01, 5.842780415252e-03, 3.4186e-01, 1.8990e-03, + 2DIAGNOSTIC, 51, -8.609937735929e-01, 5.563907157557e-03, 3.4394e-01, 2.0759e-03, + 2DIAGNOSTIC, 52, -8.677800069418e-01, 4.843482700503e-03, 3.4602e-01, 2.0850e-03, + 2DIAGNOSTIC, 53, -8.905496298550e-01, 3.927934594694e-03, 3.4760e-01, 1.5762e-03, + 2DIAGNOSTIC, 54, -9.041701177980e-01, 3.044090665432e-03, 3.4992e-01, 2.3198e-03, + 2DIAGNOSTIC, 55, -9.058059459300e-01, 2.682179553889e-03, 3.5203e-01, 2.1141e-03, + 2DIAGNOSTIC, 56, -9.049912405627e-01, 2.222724589772e-03, 3.5388e-01, 1.8439e-03, + 2DIAGNOSTIC, 57, -9.053667642869e-01, 1.806884019899e-03, 3.5569e-01, 1.8139e-03, + 2DIAGNOSTIC, 58, -9.049095574638e-01, 1.493468554965e-03, 3.5728e-01, 1.5910e-03, + 2DIAGNOSTIC, 59, -9.038560162072e-01, 1.069686691055e-03, 3.5887e-01, 1.5869e-03, + 2DIAGNOSTIC, 60, -9.041721222193e-01, 6.236274863171e-04, 3.6048e-01, 1.6079e-03, + 2DIAGNOSTIC, 61, -9.057616557441e-01, 3.529734304835e-04, 3.6209e-01, 1.6110e-03, + 2DIAGNOSTIC, 62, -9.060416645395e-01, 1.063915176052e-04, 3.6369e-01, 1.6072e-03, + 2DIAGNOSTIC, 63, -9.065537655919e-01, 1.708420585083e-05, 3.6529e-01, 1.5910e-03, + 2DIAGNOSTIC, 64, -9.098168045868e-01, 4.280116972267e-05, 3.6806e-01, 2.7790e-03, + 2DIAGNOSTIC, 65, -9.113494123481e-01, 8.369077929227e-05, 3.6989e-01, 1.8210e-03, + 2DIAGNOSTIC, 66, -9.112421809750e-01, 1.086574863910e-04, 3.7171e-01, 1.8270e-03, + 2DIAGNOSTIC, 67, -9.107032544623e-01, 1.216666629996e-04, 3.7334e-01, 1.6279e-03, + 2DIAGNOSTIC, 68, -9.101520199582e-01, 1.168231883013e-04, 3.7492e-01, 1.5819e-03, + 2DIAGNOSTIC, 69, -9.103040512484e-01, 9.533114983915e-05, 3.7648e-01, 1.5540e-03, + 2DIAGNOSTIC, 70, -9.105338740377e-01, 6.825912419784e-05, 3.7805e-01, 1.5759e-03, + 2DIAGNOSTIC, 71, -9.108989597234e-01, 4.727407352474e-05, 3.7976e-01, 1.7040e-03, + 2DIAGNOSTIC, 72, -9.114805598077e-01, 2.781194112647e-05, 3.8159e-01, 1.8320e-03, + 2DIAGNOSTIC, 73, -9.126982761745e-01, 1.571180071031e-05, 3.8409e-01, 2.5020e-03, + 2DIAGNOSTIC, 74, -9.129199057417e-01, 2.134707300125e-05, 3.8598e-01, 1.8930e-03, + 2DIAGNOSTIC, 75, -9.133132841563e-01, 3.520682967512e-05, 3.8836e-01, 2.3758e-03, + 2DIAGNOSTIC, 76, -9.130365631645e-01, 4.329044991590e-05, 3.8990e-01, 1.5419e-03, + 2DIAGNOSTIC, 77, -9.124813055015e-01, 4.138512280670e-05, 3.9161e-01, 1.7042e-03, + 2DIAGNOSTIC, 78, -9.125465573583e-01, 3.311240248207e-05, 3.9328e-01, 1.6789e-03, + 2DIAGNOSTIC, 79, -9.134200440352e-01, 2.708143409735e-05, 3.9493e-01, 1.6470e-03, + 2DIAGNOSTIC, 80, -9.144793067354e-01, 2.498714825993e-05, 3.9686e-01, 1.9250e-03, + 2DIAGNOSTIC, 81, -9.167081982323e-01, 3.325165928783e-05, 3.9904e-01, 2.1799e-03, + 2DIAGNOSTIC, 82, -9.168039203355e-01, 4.111924290931e-05, 4.0097e-01, 1.9350e-03, + 2DIAGNOSTIC, 83, -9.162507177392e-01, 4.814576593656e-05, 4.0311e-01, 2.1431e-03, + 2DIAGNOSTIC, 84, -9.163903112900e-01, 5.210825715853e-05, 4.0596e-01, 2.8419e-03, + 2DIAGNOSTIC, 85, -9.164962645466e-01, 5.311136700968e-05, 4.0846e-01, 2.5070e-03, + 2DIAGNOSTIC, 86, -9.165669047636e-01, 4.797895051819e-05, 4.1073e-01, 2.2669e-03, + 2DIAGNOSTIC, 87, -9.181122849731e-01, 4.293123403877e-05, 4.1232e-01, 1.5950e-03, + 2DIAGNOSTIC, 88, -9.181958972383e-01, 3.454865783751e-05, 4.1399e-01, 1.6670e-03, + 2DIAGNOSTIC, 89, -9.183129477171e-01, 2.748555233239e-05, 4.1604e-01, 2.0452e-03, + 2DIAGNOSTIC, 90, -9.183684831426e-01, 2.257028635847e-05, 4.1768e-01, 1.6398e-03, + 2DIAGNOSTIC, 91, -9.184678699856e-01, 2.544698955964e-05, 4.1916e-01, 1.4811e-03, + 2DIAGNOSTIC, 92, -9.185944706497e-01, 2.672841015802e-05, 4.2142e-01, 2.2581e-03, + 2DIAGNOSTIC, 93, -9.186356141018e-01, 2.328468843013e-05, 4.2304e-01, 1.6210e-03, + 2DIAGNOSTIC, 94, -9.187499091159e-01, 1.884764304900e-05, 4.2493e-01, 1.8909e-03, + 2DIAGNOSTIC, 95, -9.182805121566e-01, 1.135095663186e-05, 4.2701e-01, 2.0850e-03, + 2DIAGNOSTIC, 96, -9.190170745739e-01, 6.073767675379e-06, 4.2859e-01, 1.5788e-03, + 2DIAGNOSTIC, 97, -9.184028644716e-01, 3.915373359217e-06, 4.3048e-01, 1.8842e-03, + 2DIAGNOSTIC, 98, -9.185466850001e-01, 2.411712401479e-06, 4.3231e-01, 1.8330e-03, + 2DIAGNOSTIC, 99, -9.192398473102e-01, 3.846852493479e-06, 4.3821e-01, 5.8970e-03, + 2DIAGNOSTIC, 100, -9.192398387215e-01, 5.031807201039e-06, 4.3977e-01, 1.5690e-03, + 2DIAGNOSTIC, 101, -9.192398665762e-01, 6.113392066531e-06, 4.4132e-01, 1.5469e-03, + 2DIAGNOSTIC, 102, -9.192399136663e-01, 7.121097073098e-06, 4.4293e-01, 1.6081e-03, + 2DIAGNOSTIC, 103, -9.192399932562e-01, 7.604378994674e-06, 4.4453e-01, 1.6000e-03, + 2DIAGNOSTIC, 104, -9.192401277308e-01, 7.788724577804e-06, 4.4612e-01, 1.5919e-03, + 2DIAGNOSTIC, 105, -9.192403548094e-01, 5.483484606682e-06, 4.4772e-01, 1.5960e-03, + 2DIAGNOSTIC, 106, -9.192407378944e-01, 5.429974550749e-06, 4.4932e-01, 1.6050e-03, + 2DIAGNOSTIC, 107, -9.192413831168e-01, 2.772593180706e-06, 4.5090e-01, 1.5819e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.521963097908e-01, 1.797693134862e+308, 7.0858e-01, 2.5768e-01, + 2DIAGNOSTIC, 2, -7.533740086549e-01, 1.797693134862e+308, 7.1088e-01, 2.2960e-03, + 2DIAGNOSTIC, 3, -7.538502697311e-01, 1.797693134862e+308, 7.1326e-01, 2.3870e-03, + 2DIAGNOSTIC, 4, -7.538046299319e-01, 1.797693134862e+308, 7.1533e-01, 2.0680e-03, + 2DIAGNOSTIC, 5, -7.543226597018e-01, 1.797693134862e+308, 7.1771e-01, 2.3789e-03, + 2DIAGNOSTIC, 6, -7.551140709300e-01, 1.797693134862e+308, 7.2002e-01, 2.3069e-03, + 2DIAGNOSTIC, 7, -7.553968788151e-01, 1.797693134862e+308, 7.2224e-01, 2.2209e-03, + 2DIAGNOSTIC, 8, -7.562226440519e-01, 1.797693134862e+308, 7.2415e-01, 1.9090e-03, + 2DIAGNOSTIC, 9, -7.570260133716e-01, 1.797693134862e+308, 7.2615e-01, 2.0051e-03, + 2DIAGNOSTIC, 10, -7.591361564740e-01, 4.800947371871e-04, 7.2870e-01, 2.5470e-03, + 2DIAGNOSTIC, 11, -7.655362649371e-01, 6.855685715640e-04, 7.3276e-01, 4.0569e-03, + 2DIAGNOSTIC, 12, -7.659880777838e-01, 8.411668939948e-04, 7.3490e-01, 2.1381e-03, + 2DIAGNOSTIC, 13, -7.670444085487e-01, 9.439645538541e-04, 7.3703e-01, 2.1379e-03, + 2DIAGNOSTIC, 14, -7.674709942641e-01, 9.580806534622e-04, 7.3921e-01, 2.1799e-03, + 2DIAGNOSTIC, 15, -7.676843363142e-01, 8.998339593248e-04, 7.4173e-01, 2.5151e-03, + 2DIAGNOSTIC, 16, -7.678587521711e-01, 7.872436971292e-04, 7.4390e-01, 2.1701e-03, + 2DIAGNOSTIC, 17, -7.679448306199e-01, 6.236682617761e-04, 7.4608e-01, 2.1861e-03, + 2DIAGNOSTIC, 18, -7.684841211826e-01, 4.512089525541e-04, 7.4859e-01, 2.5032e-03, + 2DIAGNOSTIC, 19, -7.699066374767e-01, 2.991990100221e-04, 7.5161e-01, 3.0251e-03, + 2DIAGNOSTIC, 20, -7.698057617683e-01, 1.687072647088e-04, 7.5406e-01, 2.4490e-03, + 2DIAGNOSTIC, 21, -7.696871611763e-01, 1.473692412512e-04, 7.5656e-01, 2.4929e-03, + 2DIAGNOSTIC, 22, -7.696453211184e-01, 1.213214928495e-04, 7.5879e-01, 2.2380e-03, + 2DIAGNOSTIC, 23, -7.698886288542e-01, 1.070304671482e-04, 7.6132e-01, 2.5270e-03, + 2DIAGNOSTIC, 24, -7.697953349698e-01, 8.863361221553e-05, 7.6409e-01, 2.7661e-03, + 2DIAGNOSTIC, 25, -7.700621150036e-01, 7.077640518112e-05, 7.7145e-01, 7.3600e-03, + 2DIAGNOSTIC, 26, -7.700620920734e-01, 5.062627954466e-05, 7.7351e-01, 2.0640e-03, + 2DIAGNOSTIC, 27, -7.700621218977e-01, 2.854465080622e-05, 7.7563e-01, 2.1200e-03, + 2DIAGNOSTIC, 28, -7.700621723328e-01, 1.206668972364e-05, 7.7775e-01, 2.1160e-03, + 2DIAGNOSTIC, 29, -7.700622575633e-01, 1.395594665212e-05, 7.7987e-01, 2.1260e-03, + 2DIAGNOSTIC, 30, -7.700624015029e-01, 1.328854364260e-05, 7.8203e-01, 2.1529e-03, + 2DIAGNOSTIC, 31, -7.700626457556e-01, 1.010783967692e-05, 7.8416e-01, 2.1319e-03, + 2DIAGNOSTIC, 32, -7.700630709125e-01, 5.742992645177e-06, 7.8628e-01, 2.1279e-03, + 2DIAGNOSTIC, 33, -7.700637861839e-01, 4.009121744794e-06, 7.8852e-01, 2.2318e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.308251027846e-01, 1.797693134862e+308, 1.0585e+00, 2.6995e-01, + 2DIAGNOSTIC, 2, -6.320769202036e-01, 1.797693134862e+308, 1.0709e+00, 1.2389e-02, + 2DIAGNOSTIC, 3, -6.336915469630e-01, 1.797693134862e+308, 1.0826e+00, 1.1739e-02, + 2DIAGNOSTIC, 4, -6.349723963065e-01, 1.797693134862e+308, 1.0944e+00, 1.1784e-02, + 2DIAGNOSTIC, 5, -6.352408731630e-01, 1.797693134862e+308, 1.1071e+00, 1.2687e-02, + 2DIAGNOSTIC, 6, -6.352969475976e-01, 1.797693134862e+308, 1.1189e+00, 1.1871e-02, + 2DIAGNOSTIC, 7, -6.353115552072e-01, 1.797693134862e+308, 1.1380e+00, 1.9077e-02, + 2DIAGNOSTIC, 8, -6.353774197054e-01, 1.797693134862e+308, 1.1495e+00, 1.1488e-02, + 2DIAGNOSTIC, 9, -6.353649792935e-01, 1.797693134862e+308, 1.1645e+00, 1.5034e-02, + 2DIAGNOSTIC, 10, -6.353531484006e-01, 3.952922378117e-04, 1.1780e+00, 1.3429e-02, + 2DIAGNOSTIC, 11, -6.353435141246e-01, 2.089563303734e-04, 1.1905e+00, 1.2540e-02, + 2DIAGNOSTIC, 12, -6.353944331046e-01, 8.285119334842e-05, 1.2023e+00, 1.1748e-02, + 2DIAGNOSTIC, 13, -6.354424167522e-01, 2.498812115341e-05, 1.2153e+00, 1.3030e-02, + 2DIAGNOSTIC, 14, -6.354605799737e-01, 1.466016722389e-05, 1.2270e+00, 1.1685e-02, + 2DIAGNOSTIC, 15, -6.354827491090e-01, 1.328091880214e-05, 1.2405e+00, 1.3503e-02, + 2DIAGNOSTIC, 16, -6.355499611521e-01, 1.451656862564e-05, 1.2556e+00, 1.5120e-02, + 2DIAGNOSTIC, 17, -6.355207615439e-01, 1.394837082468e-05, 1.2735e+00, 1.7902e-02, + 2DIAGNOSTIC, 18, -6.355207815045e-01, 1.399128018396e-05, 1.2850e+00, 1.1492e-02, + 2DIAGNOSTIC, 19, -6.355208844763e-01, 1.263535511675e-05, 1.2987e+00, 1.3713e-02, + 2DIAGNOSTIC, 20, -6.355209006810e-01, 1.014353377611e-05, 1.3127e+00, 1.4002e-02, + 2DIAGNOSTIC, 21, -6.355063804523e-01, 6.541762437300e-06, 1.3249e+00, 1.2183e-02, + 2DIAGNOSTIC, 22, -6.354918664997e-01, 3.536347506092e-06, 1.3369e+00, 1.1992e-02, + 2DIAGNOSTIC, 23, -6.354773742505e-01, 1.271975738404e-06, 1.3498e+00, 1.2954e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.400619495457e-01, 1.797693134862e+308, 1.8184e+00, 4.6858e-01, + 2DIAGNOSTIC, 2, -5.401742743000e-01, 1.797693134862e+308, 1.9169e+00, 9.8494e-02, + 2DIAGNOSTIC, 3, -5.403286551620e-01, 1.797693134862e+308, 2.0224e+00, 1.0549e-01, + 2DIAGNOSTIC, 4, -5.404574849338e-01, 1.797693134862e+308, 2.2058e+00, 1.8339e-01, + 2DIAGNOSTIC, 5, -5.404565670050e-01, 1.797693134862e+308, 2.3026e+00, 9.6800e-02, + 2DIAGNOSTIC, 6, -5.404758285669e-01, 1.797693134862e+308, 2.3941e+00, 9.1559e-02, + 2DIAGNOSTIC, 7, -5.404942086289e-01, 1.797693134862e+308, 2.4883e+00, 9.4109e-02, + 2DIAGNOSTIC, 8, -5.405221146517e-01, 1.797693134862e+308, 2.5720e+00, 8.3760e-02, + 2DIAGNOSTIC, 9, -5.405552663544e-01, 1.797693134862e+308, 2.6539e+00, 8.1868e-02, + 2DIAGNOSTIC, 10, -5.406058984669e-01, 5.750490482377e-05, 2.7363e+00, 8.2399e-02, + 2DIAGNOSTIC, 11, -5.406526841698e-01, 4.223290700064e-05, 2.8433e+00, 1.0697e-01, + 2DIAGNOSTIC, 12, -5.406854688402e-01, 3.218258020714e-05, 3.0518e+00, 2.0854e-01, + 2DIAGNOSTIC, 13, -5.406902397900e-01, 2.730466917729e-05, 3.1495e+00, 9.7719e-02, + 2DIAGNOSTIC, 14, -5.406852503710e-01, 2.554489119128e-05, 3.2855e+00, 1.3602e-01, + 2DIAGNOSTIC, 15, -5.406853816187e-01, 2.185733386198e-05, 3.3832e+00, 9.7664e-02, + 2DIAGNOSTIC, 16, -5.406826244100e-01, 1.733919977931e-05, 3.4801e+00, 9.6935e-02, + 2DIAGNOSTIC, 17, -5.406813842052e-01, 1.245977194594e-05, 3.5748e+00, 9.4661e-02, + 2DIAGNOSTIC, 18, -5.406801273719e-01, 7.930062919603e-06, 3.6718e+00, 9.7044e-02, + 2DIAGNOSTIC, 19, -5.406745372753e-01, 4.060356120078e-06, 3.7604e+00, 8.8598e-02, + 2DIAGNOSTIC, 20, -5.406748885260e-01, 1.677478303604e-06, 3.8670e+00, 1.0659e-01, + Elapsed time (stage 0): 4.0175e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.557073501622e-01, 1.797693134862e+308, 2.2918e-01, 2.2918e-01, + 2DIAGNOSTIC, 2, -8.581938594118e-01, 1.797693134862e+308, 2.3074e-01, 1.5550e-03, + 2DIAGNOSTIC, 3, -8.619096446972e-01, 1.797693134862e+308, 2.3213e-01, 1.3890e-03, + 2DIAGNOSTIC, 4, -8.670943735903e-01, 1.797693134862e+308, 2.3356e-01, 1.4331e-03, + 2DIAGNOSTIC, 5, -8.737619125527e-01, 1.797693134862e+308, 2.3493e-01, 1.3750e-03, + 2DIAGNOSTIC, 6, -8.820816851057e-01, 1.797693134862e+308, 2.3635e-01, 1.4160e-03, + 2DIAGNOSTIC, 7, -8.950748256176e-01, 1.797693134862e+308, 2.3775e-01, 1.4040e-03, + 2DIAGNOSTIC, 8, -9.231624767714e-01, 1.797693134862e+308, 2.3907e-01, 1.3208e-03, + 2DIAGNOSTIC, 9, -9.366704780355e-01, 1.797693134862e+308, 2.4079e-01, 1.7121e-03, + 2DIAGNOSTIC, 10, -9.537697051798e-01, 7.152414425488e-03, 2.4287e-01, 2.0869e-03, + 2DIAGNOSTIC, 11, -9.567996181249e-01, 7.289899597316e-03, 2.4475e-01, 1.8730e-03, + 2DIAGNOSTIC, 12, -9.651791192177e-01, 7.034523600692e-03, 2.4617e-01, 1.4231e-03, + 2DIAGNOSTIC, 13, -9.736413460446e-01, 6.467847780651e-03, 2.4770e-01, 1.5330e-03, + 2DIAGNOSTIC, 14, -9.780993533840e-01, 5.607669459670e-03, 2.4966e-01, 1.9548e-03, + 2DIAGNOSTIC, 15, -9.790576923527e-01, 4.520508335913e-03, 2.5146e-01, 1.8070e-03, + 2DIAGNOSTIC, 16, -9.792441997829e-01, 3.333086058726e-03, 2.5335e-01, 1.8840e-03, + 2DIAGNOSTIC, 17, -9.789093799907e-01, 2.208523741239e-03, 2.5493e-01, 1.5788e-03, + 2DIAGNOSTIC, 18, -9.780938125027e-01, 1.471893959355e-03, 2.5646e-01, 1.5340e-03, + 2DIAGNOSTIC, 19, -9.789767955559e-01, 9.058030514043e-04, 2.5833e-01, 1.8649e-03, + 2DIAGNOSTIC, 20, -9.800457322825e-01, 5.932965602966e-04, 2.6000e-01, 1.6761e-03, + 2DIAGNOSTIC, 21, -9.805525938454e-01, 3.066785597528e-04, 2.6161e-01, 1.6060e-03, + 2DIAGNOSTIC, 22, -9.813094255549e-01, 1.427421132986e-04, 2.6411e-01, 2.5020e-03, + 2DIAGNOSTIC, 23, -9.821601566441e-01, 1.017457715348e-04, 2.6597e-01, 1.8630e-03, + 2DIAGNOSTIC, 24, -9.823282654531e-01, 1.124809475866e-04, 2.6754e-01, 1.5662e-03, + 2DIAGNOSTIC, 25, -9.816540881288e-01, 1.149981990973e-04, 2.6980e-01, 2.2640e-03, + 2DIAGNOSTIC, 26, -9.811192896380e-01, 1.030022494956e-04, 2.7127e-01, 1.4710e-03, + 2DIAGNOSTIC, 27, -9.805964327120e-01, 7.329679999674e-05, 2.7290e-01, 1.6260e-03, + 2DIAGNOSTIC, 28, -9.815425798283e-01, 4.013605271181e-05, 2.7447e-01, 1.5719e-03, + 2DIAGNOSTIC, 29, -9.819142915581e-01, 1.804388168353e-05, 2.7609e-01, 1.6210e-03, + 2DIAGNOSTIC, 30, -9.845054776885e-01, 3.254661639425e-05, 2.7793e-01, 1.8339e-03, + 2DIAGNOSTIC, 31, -9.864543734149e-01, 6.631835873597e-05, 2.7953e-01, 1.6060e-03, + 2DIAGNOSTIC, 32, -9.864426053311e-01, 9.826457696544e-05, 2.8133e-01, 1.7989e-03, + 2DIAGNOSTIC, 33, -9.871413806322e-01, 1.332623953828e-04, 2.8278e-01, 1.4460e-03, + 2DIAGNOSTIC, 34, -9.895985964549e-01, 1.765543573974e-04, 2.8553e-01, 2.7499e-03, + 2DIAGNOSTIC, 35, -9.890065955179e-01, 1.890832633999e-04, 2.8703e-01, 1.5039e-03, + 2DIAGNOSTIC, 36, -9.898260413243e-01, 1.857596654518e-04, 2.8866e-01, 1.6332e-03, + 2DIAGNOSTIC, 37, -9.900569126376e-01, 1.628563231957e-04, 2.9029e-01, 1.6289e-03, + 2DIAGNOSTIC, 38, -9.903264377747e-01, 1.354786729937e-04, 2.9193e-01, 1.6332e-03, + 2DIAGNOSTIC, 39, -9.906085357974e-01, 1.010629911656e-04, 2.9439e-01, 2.4629e-03, + 2DIAGNOSTIC, 40, -9.907698774812e-01, 7.891028900646e-05, 2.9589e-01, 1.5030e-03, + 2DIAGNOSTIC, 41, -9.908495375348e-01, 6.536249923725e-05, 2.9734e-01, 1.4501e-03, + 2DIAGNOSTIC, 42, -9.909637962787e-01, 4.701522522725e-05, 2.9903e-01, 1.6870e-03, + 2DIAGNOSTIC, 43, -9.910767550049e-01, 3.023064749949e-05, 3.0122e-01, 2.1949e-03, + 2DIAGNOSTIC, 44, -9.911613626780e-01, 2.864342129558e-05, 3.0320e-01, 1.9729e-03, + 2DIAGNOSTIC, 45, -9.912433300621e-01, 2.098739876776e-05, 3.0500e-01, 1.8051e-03, + 2DIAGNOSTIC, 46, -9.908967119262e-01, 1.476548128337e-05, 3.0703e-01, 2.0280e-03, + 2DIAGNOSTIC, 47, -9.905669485625e-01, 6.900581289448e-06, 3.0896e-01, 1.9250e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.718881013328e-01, 1.797693134862e+308, 5.3766e-01, 2.2870e-01, + 2DIAGNOSTIC, 2, -8.747709091729e-01, 1.797693134862e+308, 5.4093e-01, 3.2771e-03, + 2DIAGNOSTIC, 3, -8.768274485495e-01, 1.797693134862e+308, 5.4394e-01, 3.0119e-03, + 2DIAGNOSTIC, 4, -8.799748529071e-01, 1.797693134862e+308, 5.4668e-01, 2.7380e-03, + 2DIAGNOSTIC, 5, -8.830094543717e-01, 1.797693134862e+308, 5.4945e-01, 2.7721e-03, + 2DIAGNOSTIC, 6, -8.848687053078e-01, 1.797693134862e+308, 5.5216e-01, 2.7058e-03, + 2DIAGNOSTIC, 7, -8.881107911635e-01, 1.797693134862e+308, 5.5517e-01, 3.0081e-03, + 2DIAGNOSTIC, 8, -8.892288038511e-01, 1.797693134862e+308, 5.5865e-01, 3.4828e-03, + 2DIAGNOSTIC, 9, -8.933933069530e-01, 1.797693134862e+308, 5.6138e-01, 2.7289e-03, + 2DIAGNOSTIC, 10, -8.947727184818e-01, 1.674491606085e-03, 5.6459e-01, 3.2051e-03, + 2DIAGNOSTIC, 11, -8.945072829823e-01, 1.412778935926e-03, 5.6739e-01, 2.8081e-03, + 2DIAGNOSTIC, 12, -8.945638077690e-01, 1.148907442553e-03, 5.7018e-01, 2.7859e-03, + 2DIAGNOSTIC, 13, -8.945332012603e-01, 8.712912644029e-04, 5.7255e-01, 2.3680e-03, + 2DIAGNOSTIC, 14, -8.944566763738e-01, 6.229696128253e-04, 5.7492e-01, 2.3749e-03, + 2DIAGNOSTIC, 15, -8.946374913295e-01, 4.193842737779e-04, 5.7729e-01, 2.3701e-03, + 2DIAGNOSTIC, 16, -8.949977972062e-01, 2.472241137716e-04, 5.7963e-01, 2.3339e-03, + 2DIAGNOSTIC, 17, -8.951352998526e-01, 1.371109368547e-04, 5.8325e-01, 3.6199e-03, + 2DIAGNOSTIC, 18, -8.951693229627e-01, 4.547237480938e-05, 5.8555e-01, 2.3050e-03, + 2DIAGNOSTIC, 19, -8.950269891060e-01, 2.660055526663e-05, 5.8794e-01, 2.3870e-03, + 2DIAGNOSTIC, 20, -8.951044629036e-01, 3.076141734863e-05, 5.9100e-01, 3.0589e-03, + 2DIAGNOSTIC, 21, -8.951246104335e-01, 2.786455532746e-05, 5.9337e-01, 2.3730e-03, + 2DIAGNOSTIC, 22, -8.949674490837e-01, 2.127156323795e-05, 5.9614e-01, 2.7680e-03, + 2DIAGNOSTIC, 23, -8.948791047574e-01, 1.196791649907e-05, 5.9929e-01, 3.1550e-03, + 2DIAGNOSTIC, 24, -8.950960475807e-01, 4.377935856351e-06, 6.0212e-01, 2.8310e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.509517524432e-01, 1.797693134862e+308, 8.5718e-01, 2.5506e-01, + 2DIAGNOSTIC, 2, -7.518800613006e-01, 1.797693134862e+308, 8.7034e-01, 1.3154e-02, + 2DIAGNOSTIC, 3, -7.530966066889e-01, 1.797693134862e+308, 8.8297e-01, 1.2633e-02, + 2DIAGNOSTIC, 4, -7.541424731693e-01, 1.797693134862e+308, 8.9529e-01, 1.2318e-02, + 2DIAGNOSTIC, 5, -7.548174148185e-01, 1.797693134862e+308, 9.0886e-01, 1.3572e-02, + 2DIAGNOSTIC, 6, -7.552634375617e-01, 1.797693134862e+308, 9.3043e-01, 2.1570e-02, + 2DIAGNOSTIC, 7, -7.554340148315e-01, 1.797693134862e+308, 9.4985e-01, 1.9423e-02, + 2DIAGNOSTIC, 8, -7.554215962940e-01, 1.797693134862e+308, 9.6559e-01, 1.5739e-02, + 2DIAGNOSTIC, 9, -7.554000830957e-01, 1.797693134862e+308, 9.7982e-01, 1.4226e-02, + 2DIAGNOSTIC, 10, -7.553687362524e-01, 3.725363497275e-04, 9.9403e-01, 1.4213e-02, + 2DIAGNOSTIC, 11, -7.553752040593e-01, 2.314808415152e-04, 1.0126e+00, 1.8601e-02, + 2DIAGNOSTIC, 12, -7.553691092378e-01, 1.219019550708e-04, 1.0295e+00, 1.6906e-02, + 2DIAGNOSTIC, 13, -7.553775601141e-01, 5.349327346313e-05, 1.0474e+00, 1.7845e-02, + 2DIAGNOSTIC, 14, -7.553446893873e-01, 1.719515715477e-05, 1.0652e+00, 1.7819e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.291774314153e-01, 1.797693134862e+308, 1.5285e+00, 4.6332e-01, + 2DIAGNOSTIC, 2, -6.302633833371e-01, 1.797693134862e+308, 1.6304e+00, 1.0184e-01, + 2DIAGNOSTIC, 3, -6.314326100418e-01, 1.797693134862e+308, 1.7335e+00, 1.0314e-01, + 2DIAGNOSTIC, 4, -6.322511716724e-01, 1.797693134862e+308, 1.8385e+00, 1.0499e-01, + 2DIAGNOSTIC, 5, -6.326935127525e-01, 1.797693134862e+308, 1.9390e+00, 1.0050e-01, + 2DIAGNOSTIC, 6, -6.330529760069e-01, 1.797693134862e+308, 2.0416e+00, 1.0263e-01, + 2DIAGNOSTIC, 7, -6.335313336723e-01, 1.797693134862e+308, 2.1894e+00, 1.4779e-01, + 2DIAGNOSTIC, 8, -6.335622920356e-01, 1.797693134862e+308, 2.3859e+00, 1.9650e-01, + 2DIAGNOSTIC, 9, -6.335620252871e-01, 1.797693134862e+308, 2.4962e+00, 1.1026e-01, + 2DIAGNOSTIC, 10, -6.335562451162e-01, 4.262696120259e-04, 2.6162e+00, 1.2005e-01, + 2DIAGNOSTIC, 11, -6.335521525671e-01, 2.704493883877e-04, 2.7516e+00, 1.3534e-01, + 2DIAGNOSTIC, 12, -6.335456449500e-01, 1.561035434597e-04, 2.8590e+00, 1.0746e-01, + 2DIAGNOSTIC, 13, -6.335431539865e-01, 8.534166839842e-05, 2.9834e+00, 1.2435e-01, + 2DIAGNOSTIC, 14, -6.335405071894e-01, 4.333271373917e-05, 3.1165e+00, 1.3314e-01, + 2DIAGNOSTIC, 15, -6.335372892595e-01, 1.621492341541e-05, 3.2407e+00, 1.2421e-01, + Elapsed time (stage 1): 3.3743e+00 + + +Total elapsed time: 7.3959e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:46:27 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:46:28 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5600f4edc4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.051, 60.8682, -115.329] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f4ee1fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5cf48b5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5600f4edd850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.051, 60.8682, -115.329] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f4edaf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5cf11f6010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5600f4ef4b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.051, 60.8682, -115.329] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f4ee1550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5cedb37010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5600f4ef9d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.051, 60.8682, -115.329] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f4ef7c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5cea478010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x5600f4efbf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.051, 60.8682, -115.329] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f4efa3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5ce6db9010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5600f4efc540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.051, 60.8682, -115.329] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5600f4efc4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5ce36fa010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.317117729526e-01, 1.797693134862e+308, 2.2043e-01, 2.2043e-01, + 2DIAGNOSTIC, 2, -7.346864317874e-01, 1.797693134862e+308, 2.2288e-01, 2.4450e-03, + 2DIAGNOSTIC, 3, -7.383394246953e-01, 1.797693134862e+308, 2.2543e-01, 2.5492e-03, + 2DIAGNOSTIC, 4, -7.432735160290e-01, 1.797693134862e+308, 2.2839e-01, 2.9659e-03, + 2DIAGNOSTIC, 5, -7.490994606727e-01, 1.797693134862e+308, 2.3112e-01, 2.7239e-03, + 2DIAGNOSTIC, 6, -7.521109704623e-01, 1.797693134862e+308, 2.3409e-01, 2.9681e-03, + 2DIAGNOSTIC, 7, -7.520482786294e-01, 1.797693134862e+308, 2.3667e-01, 2.5849e-03, + 2DIAGNOSTIC, 8, -7.520292672588e-01, 1.797693134862e+308, 2.3876e-01, 2.0940e-03, + 2DIAGNOSTIC, 9, -7.520109898060e-01, 1.797693134862e+308, 2.4080e-01, 2.0401e-03, + 2DIAGNOSTIC, 10, -7.521934549210e-01, 1.901952804502e-03, 2.4367e-01, 2.8641e-03, + 2DIAGNOSTIC, 11, -7.528134353406e-01, 1.308700643555e-03, 2.4764e-01, 3.9680e-03, + 2DIAGNOSTIC, 12, -7.528177362151e-01, 7.933163076378e-04, 2.4985e-01, 2.2159e-03, + 2DIAGNOSTIC, 13, -7.528286020429e-01, 3.933007630884e-04, 2.5201e-01, 2.1570e-03, + 2DIAGNOSTIC, 14, -7.528399914899e-01, 1.462785276934e-04, 2.5486e-01, 2.8510e-03, + 2DIAGNOSTIC, 15, -7.528498376846e-01, 6.471116632299e-05, 2.5774e-01, 2.8832e-03, + 2DIAGNOSTIC, 16, -7.528547920928e-01, 5.902487953224e-05, 2.6061e-01, 2.8701e-03, + 2DIAGNOSTIC, 17, -7.528609895044e-01, 4.752450169847e-05, 2.6350e-01, 2.8870e-03, + 2DIAGNOSTIC, 18, -7.528696195471e-01, 3.314101279521e-05, 2.6572e-01, 2.2242e-03, + 2DIAGNOSTIC, 19, -7.530483311968e-01, 2.061567708843e-05, 2.6783e-01, 2.1019e-03, + 2DIAGNOSTIC, 20, -7.532134826149e-01, 1.375215760709e-05, 2.7055e-01, 2.7230e-03, + 2DIAGNOSTIC, 21, -7.532154567916e-01, 1.760119792619e-05, 2.7271e-01, 2.1560e-03, + 2DIAGNOSTIC, 22, -7.530723512563e-01, 1.728663513127e-05, 2.7526e-01, 2.5539e-03, + 2DIAGNOSTIC, 23, -7.529448438008e-01, 1.369252595354e-05, 2.7749e-01, 2.2261e-03, + 2DIAGNOSTIC, 24, -7.529404805734e-01, 9.327974355794e-06, 2.8463e-01, 7.1421e-03, + 2DIAGNOSTIC, 25, -7.529404325752e-01, 4.603464575599e-06, 2.8685e-01, 2.2249e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.349416228085e-01, 1.797693134862e+308, 5.3224e-01, 2.4539e-01, + 2DIAGNOSTIC, 2, -6.359518667397e-01, 1.797693134862e+308, 5.4760e-01, 1.5359e-02, + 2DIAGNOSTIC, 3, -6.372440513482e-01, 1.797693134862e+308, 5.6316e-01, 1.5552e-02, + 2DIAGNOSTIC, 4, -6.384270685655e-01, 1.797693134862e+308, 5.7896e-01, 1.5806e-02, + 2DIAGNOSTIC, 5, -6.388759757589e-01, 1.797693134862e+308, 5.9451e-01, 1.5551e-02, + 2DIAGNOSTIC, 6, -6.389344195007e-01, 1.797693134862e+308, 6.0795e-01, 1.3436e-02, + 2DIAGNOSTIC, 7, -6.397624906319e-01, 1.797693134862e+308, 6.2287e-01, 1.4924e-02, + 2DIAGNOSTIC, 8, -6.402240412867e-01, 1.797693134862e+308, 6.6914e-01, 4.6272e-02, + 2DIAGNOSTIC, 9, -6.402239829789e-01, 1.797693134862e+308, 6.8276e-01, 1.3612e-02, + 2DIAGNOSTIC, 10, -6.402240673386e-01, 5.257706189261e-04, 6.9698e-01, 1.4228e-02, + 2DIAGNOSTIC, 11, -6.402242099669e-01, 3.630999062521e-04, 7.1114e-01, 1.4156e-02, + 2DIAGNOSTIC, 12, -6.402244507744e-01, 2.316144891141e-04, 7.2509e-01, 1.3946e-02, + 2DIAGNOSTIC, 13, -6.402248568479e-01, 1.426465924284e-04, 7.3891e-01, 1.3828e-02, + 2DIAGNOSTIC, 14, -6.402255404895e-01, 9.127544519012e-05, 7.5299e-01, 1.4072e-02, + 2DIAGNOSTIC, 15, -6.402266953241e-01, 5.245515759825e-05, 7.6627e-01, 1.3281e-02, + 2DIAGNOSTIC, 16, -6.402286418063e-01, 1.505318705261e-05, 7.8048e-01, 1.4209e-02, + 2DIAGNOSTIC, 17, -6.402318883664e-01, 2.252118957262e-06, 7.9392e-01, 1.3443e-02, + 2DIAGNOSTIC, 18, -6.402372524808e-01, 2.371928655411e-06, 8.0756e-01, 1.3640e-02, + 2DIAGNOSTIC, 19, -6.402460220214e-01, 2.624875667163e-06, 8.2287e-01, 1.5311e-02, + 2DIAGNOSTIC, 20, -6.402521754192e-01, 2.899525858385e-06, 8.3555e-01, 1.2677e-02, + 2DIAGNOSTIC, 21, -6.402473331320e-01, 2.926291754295e-06, 8.4817e-01, 1.2628e-02, + 2DIAGNOSTIC, 22, -6.402629415403e-01, 3.145042244843e-06, 8.6269e-01, 1.4511e-02, + 2DIAGNOSTIC, 23, -6.402529650484e-01, 2.991095881949e-06, 8.7698e-01, 1.4295e-02, + 2DIAGNOSTIC, 24, -6.402403041359e-01, 2.482205663228e-06, 8.9267e-01, 1.5689e-02, + 2DIAGNOSTIC, 25, -6.402167470576e-01, 1.515366367291e-06, 9.0643e-01, 1.3756e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.313015327737e-01, 1.797693134862e+308, 1.3179e+00, 4.1144e-01, + 2DIAGNOSTIC, 2, -5.323076148711e-01, 1.797693134862e+308, 1.4136e+00, 9.5704e-02, + 2DIAGNOSTIC, 3, -5.333997907667e-01, 1.797693134862e+308, 1.5095e+00, 9.5931e-02, + 2DIAGNOSTIC, 4, -5.341469951035e-01, 1.797693134862e+308, 1.6022e+00, 9.2677e-02, + 2DIAGNOSTIC, 5, -5.343887552736e-01, 1.797693134862e+308, 1.7095e+00, 1.0728e-01, + 2DIAGNOSTIC, 6, -5.344020764860e-01, 1.797693134862e+308, 1.7951e+00, 8.5635e-02, + 2DIAGNOSTIC, 7, -5.344071171348e-01, 1.797693134862e+308, 1.9019e+00, 1.0679e-01, + 2DIAGNOSTIC, 8, -5.344109992532e-01, 1.797693134862e+308, 2.0076e+00, 1.0574e-01, + 2DIAGNOSTIC, 9, -5.344210117649e-01, 1.797693134862e+308, 2.1262e+00, 1.1857e-01, + 2DIAGNOSTIC, 10, -5.344185744563e-01, 3.118498769111e-04, 2.2324e+00, 1.0617e-01, + 2DIAGNOSTIC, 11, -5.344157298997e-01, 1.578591259299e-04, 2.3636e+00, 1.3124e-01, + 2DIAGNOSTIC, 12, -5.344159284252e-01, 5.949616963513e-05, 2.4740e+00, 1.1042e-01, + 2DIAGNOSTIC, 13, -5.344154620066e-01, 1.509355756549e-05, 2.6080e+00, 1.3393e-01, + 2DIAGNOSTIC, 14, -5.344155093854e-01, 4.039762436889e-06, 2.7209e+00, 1.1290e-01, + 2DIAGNOSTIC, 15, -5.344143697216e-01, 2.829074724903e-06, 2.8287e+00, 1.0786e-01, + 2DIAGNOSTIC, 16, -5.344135454607e-01, 2.125644282189e-06, 2.9345e+00, 1.0578e-01, + 2DIAGNOSTIC, 17, -5.344119572067e-01, 1.600259315206e-06, 3.0414e+00, 1.0693e-01, + 2DIAGNOSTIC, 18, -5.344102034204e-01, 1.211342328757e-06, 3.1336e+00, 9.2120e-02, + 2DIAGNOSTIC, 19, -5.344122041293e-01, 1.253206417022e-06, 3.2535e+00, 1.1998e-01, + 2DIAGNOSTIC, 20, -5.344129987091e-01, 1.286239991384e-06, 3.3597e+00, 1.0618e-01, + 2DIAGNOSTIC, 21, -5.344120402984e-01, 1.247850790517e-06, 3.4646e+00, 1.0492e-01, + 2DIAGNOSTIC, 22, -5.344098264094e-01, 1.191666137289e-06, 3.5535e+00, 8.8870e-02, + 2DIAGNOSTIC, 23, -5.344095839136e-01, 1.149315459949e-06, 3.6323e+00, 7.8790e-02, + 2DIAGNOSTIC, 24, -5.344101812100e-01, 1.145242973184e-06, 3.7520e+00, 1.1970e-01, + 2DIAGNOSTIC, 25, -5.344092199575e-01, 1.111688810354e-06, 3.8596e+00, 1.0765e-01, + 2DIAGNOSTIC, 26, -5.344098258901e-01, 1.093657466443e-06, 3.9648e+00, 1.0519e-01, + 2DIAGNOSTIC, 27, -5.344090742497e-01, 1.045301935440e-06, 4.0594e+00, 9.4588e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.646828112833e-01, 1.797693134862e+308, 5.2868e+00, 1.2273e+00, + 2DIAGNOSTIC, 2, -4.648157117095e-01, 1.797693134862e+308, 5.8391e+00, 5.5232e-01, + 2DIAGNOSTIC, 3, -4.648987390979e-01, 1.797693134862e+308, 6.3708e+00, 5.3169e-01, + 2DIAGNOSTIC, 4, -4.649779767191e-01, 1.797693134862e+308, 7.4112e+00, 1.0404e+00, + 2DIAGNOSTIC, 5, -4.649752657187e-01, 1.797693134862e+308, 8.0581e+00, 6.4692e-01, + 2DIAGNOSTIC, 6, -4.649745983780e-01, 1.797693134862e+308, 8.7104e+00, 6.5228e-01, + 2DIAGNOSTIC, 7, -4.649735095777e-01, 1.797693134862e+308, 9.5701e+00, 8.5970e-01, + 2DIAGNOSTIC, 8, -4.649737083439e-01, 1.797693134862e+308, 1.0392e+01, 8.2168e-01, + 2DIAGNOSTIC, 9, -4.649736577841e-01, 1.797693134862e+308, 1.0900e+01, 5.0805e-01, + 2DIAGNOSTIC, 10, -4.649732091625e-01, 3.245205000391e-05, 1.1509e+01, 6.0893e-01, + 2DIAGNOSTIC, 11, -4.649730107700e-01, 1.502972825075e-05, 1.2063e+01, 5.5451e-01, + 2DIAGNOSTIC, 12, -4.649727350040e-01, 6.105293639147e-06, 1.2752e+01, 6.8877e-01, + 2DIAGNOSTIC, 13, -4.649726842025e-01, 2.034895924069e-06, 1.3368e+01, 6.1643e-01, + 2DIAGNOSTIC, 14, -4.649723647271e-01, 2.031437563693e-06, 1.3912e+01, 5.4386e-01, + 2DIAGNOSTIC, 15, -4.649723086001e-01, 1.938551741687e-06, 1.4527e+01, 6.1455e-01, + 2DIAGNOSTIC, 16, -4.649720275864e-01, 1.839127470260e-06, 1.5132e+01, 6.0479e-01, + 2DIAGNOSTIC, 17, -4.649719569178e-01, 1.723226296615e-06, 1.5662e+01, 5.3077e-01, + 2DIAGNOSTIC, 18, -4.649716315521e-01, 1.629366748412e-06, 1.6292e+01, 6.2945e-01, + 2DIAGNOSTIC, 19, -4.649713339765e-01, 1.547474889216e-06, 1.6913e+01, 6.2161e-01, + 2DIAGNOSTIC, 20, -4.649713830409e-01, 1.473595781211e-06, 1.7618e+01, 7.0462e-01, + 2DIAGNOSTIC, 21, -4.649713082302e-01, 1.409611686147e-06, 1.8232e+01, 6.1383e-01, + 2DIAGNOSTIC, 22, -4.649712335584e-01, 1.351477877359e-06, 1.8754e+01, 5.2175e-01, + 2DIAGNOSTIC, 23, -4.649712156733e-01, 1.305755699191e-06, 1.9298e+01, 5.4404e-01, + 2DIAGNOSTIC, 24, -4.649712938924e-01, 1.264988219223e-06, 1.9895e+01, 5.9763e-01, + 2DIAGNOSTIC, 25, -4.649715728368e-01, 1.238580265496e-06, 2.0502e+01, 6.0680e-01, + 2DIAGNOSTIC, 26, -4.649715915922e-01, 1.210924554997e-06, 2.1187e+01, 6.8458e-01, + 2DIAGNOSTIC, 27, -4.649715673429e-01, 1.184631229598e-06, 2.1800e+01, 6.1318e-01, + 2DIAGNOSTIC, 28, -4.649715684207e-01, 1.152827344655e-06, 2.2346e+01, 5.4587e-01, + 2DIAGNOSTIC, 29, -4.649713632798e-01, 1.110918877070e-06, 2.3091e+01, 7.4543e-01, + 2DIAGNOSTIC, 30, -4.649714525930e-01, 1.073329357254e-06, 2.3745e+01, 6.5354e-01, + 2DIAGNOSTIC, 31, -4.649713611692e-01, 1.033599650840e-06, 2.4294e+01, 5.4942e-01, + Elapsed time (stage 0): 2.4650e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.388660993617e-01, 1.797693134862e+308, 1.7755e-01, 1.7755e-01, + 2DIAGNOSTIC, 2, -7.413120787278e-01, 1.797693134862e+308, 1.7980e-01, 2.2511e-03, + 2DIAGNOSTIC, 3, -7.446662562352e-01, 1.797693134862e+308, 1.8195e-01, 2.1520e-03, + 2DIAGNOSTIC, 4, -7.502148458805e-01, 1.797693134862e+308, 1.8410e-01, 2.1532e-03, + 2DIAGNOSTIC, 5, -7.550644936170e-01, 1.797693134862e+308, 1.8624e-01, 2.1331e-03, + 2DIAGNOSTIC, 6, -7.579390419359e-01, 1.797693134862e+308, 1.8811e-01, 1.8771e-03, + 2DIAGNOSTIC, 7, -7.593430139429e-01, 1.797693134862e+308, 1.9016e-01, 2.0421e-03, + 2DIAGNOSTIC, 8, -7.596549256470e-01, 1.797693134862e+308, 1.9280e-01, 2.6491e-03, + 2DIAGNOSTIC, 9, -7.596256564109e-01, 1.797693134862e+308, 1.9494e-01, 2.1341e-03, + 2DIAGNOSTIC, 10, -7.596563946985e-01, 1.968682233899e-03, 1.9702e-01, 2.0800e-03, + 2DIAGNOSTIC, 11, -7.595448482502e-01, 1.385579782546e-03, 1.9911e-01, 2.0940e-03, + 2DIAGNOSTIC, 12, -7.594649489983e-01, 8.514065719135e-04, 2.0111e-01, 1.9970e-03, + 2DIAGNOSTIC, 13, -7.596180366640e-01, 4.232354798553e-04, 2.0338e-01, 2.2750e-03, + 2DIAGNOSTIC, 14, -7.598072964173e-01, 1.703890136846e-04, 2.0650e-01, 3.1171e-03, + 2DIAGNOSTIC, 15, -7.598372892621e-01, 5.695621033890e-05, 2.0900e-01, 2.4960e-03, + 2DIAGNOSTIC, 16, -7.598536426167e-01, 2.002394296247e-05, 2.1205e-01, 3.0499e-03, + 2DIAGNOSTIC, 17, -7.595817215774e-01, 1.075001088484e-05, 2.1522e-01, 3.1769e-03, + 2DIAGNOSTIC, 18, -7.600191200568e-01, 1.744801539390e-05, 2.1885e-01, 3.6211e-03, + 2DIAGNOSTIC, 19, -7.600403472014e-01, 2.137263729605e-05, 2.2135e-01, 2.5060e-03, + 2DIAGNOSTIC, 20, -7.602144913108e-01, 2.699249941809e-05, 2.2417e-01, 2.8179e-03, + 2DIAGNOSTIC, 21, -7.603315394916e-01, 2.999120559965e-05, 2.2641e-01, 2.2411e-03, + 2DIAGNOSTIC, 22, -7.607312165000e-01, 3.552349463647e-05, 2.2927e-01, 2.8629e-03, + 2DIAGNOSTIC, 23, -7.614196445057e-01, 5.082252949389e-05, 2.3300e-01, 3.7301e-03, + 2DIAGNOSTIC, 24, -7.614869027058e-01, 6.389497344687e-05, 2.3575e-01, 2.7461e-03, + 2DIAGNOSTIC, 25, -7.615600265393e-01, 7.178251769688e-05, 2.3879e-01, 3.0441e-03, + 2DIAGNOSTIC, 26, -7.616068346717e-01, 7.361928335631e-05, 2.4120e-01, 2.4099e-03, + 2DIAGNOSTIC, 27, -7.614997237428e-01, 6.297738348925e-05, 2.4430e-01, 3.0980e-03, + 2DIAGNOSTIC, 28, -7.613746967399e-01, 5.138840312357e-05, 2.4688e-01, 2.5749e-03, + 2DIAGNOSTIC, 29, -7.612333144905e-01, 3.432986710208e-05, 2.4909e-01, 2.2151e-03, + 2DIAGNOSTIC, 30, -7.610925988688e-01, 1.583799792214e-05, 2.5160e-01, 2.5079e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.355303436354e-01, 1.797693134862e+308, 4.5192e-01, 2.0032e-01, + 2DIAGNOSTIC, 2, -6.370041369222e-01, 1.797693134862e+308, 4.6577e-01, 1.3847e-02, + 2DIAGNOSTIC, 3, -6.385181485376e-01, 1.797693134862e+308, 4.7948e-01, 1.3712e-02, + 2DIAGNOSTIC, 4, -6.399572733701e-01, 1.797693134862e+308, 4.9383e-01, 1.4352e-02, + 2DIAGNOSTIC, 5, -6.406772535023e-01, 1.797693134862e+308, 5.0786e-01, 1.4031e-02, + 2DIAGNOSTIC, 6, -6.410567222388e-01, 1.797693134862e+308, 5.3004e-01, 2.2176e-02, + 2DIAGNOSTIC, 7, -6.410910521878e-01, 1.797693134862e+308, 5.4201e-01, 1.1977e-02, + 2DIAGNOSTIC, 8, -6.411720826912e-01, 1.797693134862e+308, 5.5546e-01, 1.3448e-02, + 2DIAGNOSTIC, 9, -6.412686977649e-01, 1.797693134862e+308, 5.6885e-01, 1.3385e-02, + 2DIAGNOSTIC, 10, -6.413002129008e-01, 5.340930035308e-04, 5.8078e-01, 1.1929e-02, + 2DIAGNOSTIC, 11, -6.413217973483e-01, 3.220957904878e-04, 5.9271e-01, 1.1936e-02, + 2DIAGNOSTIC, 12, -6.414001424901e-01, 1.737577769182e-04, 6.0626e-01, 1.3551e-02, + 2DIAGNOSTIC, 13, -6.417437886730e-01, 9.526456546524e-05, 6.1980e-01, 1.3536e-02, + 2DIAGNOSTIC, 14, -6.419317831482e-01, 7.034304675611e-05, 6.3740e-01, 1.7600e-02, + 2DIAGNOSTIC, 15, -6.420523480906e-01, 6.710932460266e-05, 6.5980e-01, 2.2403e-02, + 2DIAGNOSTIC, 16, -6.420212516417e-01, 6.812873023890e-05, 6.7168e-01, 1.1877e-02, + 2DIAGNOSTIC, 17, -6.420238727915e-01, 6.395838512495e-05, 6.8521e-01, 1.3530e-02, + 2DIAGNOSTIC, 18, -6.420377946504e-01, 5.667739591479e-05, 6.9724e-01, 1.2027e-02, + 2DIAGNOSTIC, 19, -6.420241972919e-01, 4.689470407009e-05, 7.1476e-01, 1.7527e-02, + 2DIAGNOSTIC, 20, -6.420146220257e-01, 3.446399487284e-05, 7.2857e-01, 1.3805e-02, + 2DIAGNOSTIC, 21, -6.419789995741e-01, 1.997428248831e-05, 7.4243e-01, 1.3861e-02, + 2DIAGNOSTIC, 22, -6.419783566585e-01, 6.547879006620e-06, 7.5630e-01, 1.3873e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.323994423424e-01, 1.797693134862e+308, 1.1362e+00, 3.7994e-01, + 2DIAGNOSTIC, 2, -5.330661292750e-01, 1.797693134862e+308, 1.2396e+00, 1.0337e-01, + 2DIAGNOSTIC, 3, -5.338158414652e-01, 1.797693134862e+308, 1.3448e+00, 1.0521e-01, + 2DIAGNOSTIC, 4, -5.344504512891e-01, 1.797693134862e+308, 1.4440e+00, 9.9201e-02, + 2DIAGNOSTIC, 5, -5.349124597693e-01, 1.797693134862e+308, 1.5426e+00, 9.8542e-02, + 2DIAGNOSTIC, 6, -5.354873304498e-01, 1.797693134862e+308, 1.6602e+00, 1.1765e-01, + 2DIAGNOSTIC, 7, -5.364148034028e-01, 1.797693134862e+308, 1.8000e+00, 1.3979e-01, + 2DIAGNOSTIC, 8, -5.364890590536e-01, 1.797693134862e+308, 1.9001e+00, 1.0009e-01, + 2DIAGNOSTIC, 9, -5.365635628400e-01, 1.797693134862e+308, 2.0163e+00, 1.1623e-01, + 2DIAGNOSTIC, 10, -5.366723404137e-01, 5.459254737992e-04, 2.2045e+00, 1.8820e-01, + 2DIAGNOSTIC, 11, -5.366750225749e-01, 4.121600730980e-04, 2.3124e+00, 1.0788e-01, + 2DIAGNOSTIC, 12, -5.366867468905e-01, 2.931031011716e-04, 2.4126e+00, 1.0018e-01, + 2DIAGNOSTIC, 13, -5.366981160949e-01, 1.969859224689e-04, 2.5143e+00, 1.0173e-01, + 2DIAGNOSTIC, 14, -5.367078630577e-01, 1.216464452736e-04, 2.6151e+00, 1.0076e-01, + 2DIAGNOSTIC, 15, -5.367166767371e-01, 6.191526264231e-05, 2.7155e+00, 1.0044e-01, + 2DIAGNOSTIC, 16, -5.367407767466e-01, 2.321889347097e-05, 2.8211e+00, 1.0558e-01, + 2DIAGNOSTIC, 17, -5.367448679459e-01, 1.619707123700e-05, 2.9036e+00, 8.2457e-02, + 2DIAGNOSTIC, 18, -5.367465370861e-01, 1.084968335063e-05, 2.9865e+00, 8.2932e-02, + 2DIAGNOSTIC, 19, -5.367528027693e-01, 7.403108210000e-06, 3.1070e+00, 1.2054e-01, + 2DIAGNOSTIC, 20, -5.367550831777e-01, 6.711640947260e-06, 3.2232e+00, 1.1614e-01, + 2DIAGNOSTIC, 21, -5.367555871609e-01, 5.678240082033e-06, 3.3258e+00, 1.0266e-01, + 2DIAGNOSTIC, 22, -5.367573928331e-01, 4.673772784555e-06, 3.4260e+00, 1.0014e-01, + 2DIAGNOSTIC, 23, -5.367592203613e-01, 3.762558343133e-06, 3.5680e+00, 1.4202e-01, + 2DIAGNOSTIC, 24, -5.367595101503e-01, 2.925418441289e-06, 3.9179e+00, 3.4990e-01, + 2DIAGNOSTIC, 25, -5.367595101329e-01, 2.178714732425e-06, 4.2669e+00, 3.4899e-01, + 2DIAGNOSTIC, 26, -5.367595101329e-01, 1.896159326290e-06, 4.3952e+00, 1.2838e-01, + 2DIAGNOSTIC, 27, -5.367595101329e-01, 1.652271828120e-06, 4.5082e+00, 1.1297e-01, + 2DIAGNOSTIC, 28, -5.367595101329e-01, 1.409385433311e-06, 4.6229e+00, 1.1467e-01, + 2DIAGNOSTIC, 29, -5.367595101329e-01, 1.271354266308e-06, 4.7519e+00, 1.2900e-01, + 2DIAGNOSTIC, 30, -5.367595101329e-01, 1.167087694327e-06, 4.8794e+00, 1.2751e-01, + 2DIAGNOSTIC, 31, -5.367595101329e-01, 1.067749903598e-06, 4.9956e+00, 1.1619e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.637696816334e-01, 1.797693134862e+308, 6.4340e+00, 1.4385e+00, + 2DIAGNOSTIC, 2, -4.641173571558e-01, 1.797693134862e+308, 7.0283e+00, 5.9422e-01, + 2DIAGNOSTIC, 3, -4.642517393998e-01, 1.797693134862e+308, 7.6116e+00, 5.8330e-01, + 2DIAGNOSTIC, 4, -4.643935201385e-01, 1.797693134862e+308, 8.5240e+00, 9.1241e-01, + 2DIAGNOSTIC, 5, -4.644060608515e-01, 1.797693134862e+308, 9.1300e+00, 6.0604e-01, + 2DIAGNOSTIC, 6, -4.644218191721e-01, 1.797693134862e+308, 9.7300e+00, 6.0001e-01, + 2DIAGNOSTIC, 7, -4.644525274244e-01, 1.797693134862e+308, 1.0334e+01, 6.0377e-01, + 2DIAGNOSTIC, 8, -4.644661941321e-01, 1.797693134862e+308, 1.1014e+01, 6.7988e-01, + 2DIAGNOSTIC, 9, -4.645007542951e-01, 1.797693134862e+308, 1.2054e+01, 1.0408e+00, + 2DIAGNOSTIC, 10, -4.645035394826e-01, 7.966309844099e-05, 1.2596e+01, 5.4175e-01, + 2DIAGNOSTIC, 11, -4.645147706204e-01, 4.327853661311e-05, 1.3208e+01, 6.1171e-01, + 2DIAGNOSTIC, 12, -4.645250839286e-01, 2.748091971032e-05, 1.3811e+01, 6.0271e-01, + 2DIAGNOSTIC, 13, -4.645321908168e-01, 1.833386135235e-05, 1.4370e+01, 5.5953e-01, + 2DIAGNOSTIC, 14, -4.645362784441e-01, 1.541857632564e-05, 1.4954e+01, 5.8409e-01, + 2DIAGNOSTIC, 15, -4.645393583652e-01, 1.233172148782e-05, 1.5565e+01, 6.1071e-01, + 2DIAGNOSTIC, 16, -4.645410749406e-01, 9.350928643445e-06, 1.6160e+01, 5.9507e-01, + 2DIAGNOSTIC, 17, -4.645540589510e-01, 7.611730146337e-06, 1.7395e+01, 1.2347e+00, + 2DIAGNOSTIC, 18, -4.645544857103e-01, 5.972261806653e-06, 1.8061e+01, 6.6592e-01, + 2DIAGNOSTIC, 19, -4.645542732731e-01, 5.231377890713e-06, 1.8688e+01, 6.2731e-01, + 2DIAGNOSTIC, 20, -4.645541621165e-01, 4.317974963371e-06, 1.9708e+01, 1.0205e+00, + 2DIAGNOSTIC, 21, -4.645541625661e-01, 3.558264812201e-06, 2.1540e+01, 1.8312e+00, + 2DIAGNOSTIC, 22, -4.645541625661e-01, 2.954389310125e-06, 2.2394e+01, 8.5474e-01, + 2DIAGNOSTIC, 23, -4.645541625661e-01, 2.448111934512e-06, 2.3075e+01, 6.8090e-01, + 2DIAGNOSTIC, 24, -4.645541625661e-01, 1.992182011266e-06, 2.3745e+01, 6.7013e-01, + 2DIAGNOSTIC, 25, -4.645541625661e-01, 1.588399264792e-06, 2.4554e+01, 8.0831e-01, + 2DIAGNOSTIC, 26, -4.645541625661e-01, 1.217671617502e-06, 2.5270e+01, 7.1628e-01, + 2DIAGNOSTIC, 27, -4.645541625661e-01, 1.168862271417e-06, 2.5963e+01, 6.9280e-01, + 2DIAGNOSTIC, 28, -4.645541625661e-01, 1.133867055809e-06, 2.6621e+01, 6.5778e-01, + 2DIAGNOSTIC, 29, -4.645541625661e-01, 1.097098361907e-06, 2.7316e+01, 6.9582e-01, + 2DIAGNOSTIC, 30, -4.645541625661e-01, 1.060512960699e-06, 2.7993e+01, 6.7617e-01, + 2DIAGNOSTIC, 31, -4.645541625661e-01, 1.026297176583e-06, 2.8676e+01, 6.8387e-01, + Elapsed time (stage 1): 2.9064e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.184160431775e-01, 1.797693134862e+308, 2.6763e-01, 2.6763e-01, + 1DIAGNOSTIC, 2, -9.268840956687e-01, 1.797693134862e+308, 3.6888e-01, 1.0126e-01, + 1DIAGNOSTIC, 3, -9.339447896055e-01, 1.797693134862e+308, 4.6955e-01, 1.0067e-01, + 1DIAGNOSTIC, 4, -9.396898870379e-01, 1.797693134862e+308, 5.6908e-01, 9.9523e-02, + 1DIAGNOSTIC, 5, -9.440536421859e-01, 1.797693134862e+308, 6.6430e-01, 9.5226e-02, + 1DIAGNOSTIC, 6, -9.473646767210e-01, 1.797693134862e+308, 7.6142e-01, 9.7118e-02, + 1DIAGNOSTIC, 7, -9.499816074993e-01, 1.797693134862e+308, 8.5309e-01, 9.1668e-02, + 1DIAGNOSTIC, 8, -9.522585989072e-01, 1.797693134862e+308, 9.4521e-01, 9.2117e-02, + 1DIAGNOSTIC, 9, -9.542172920281e-01, 1.797693134862e+308, 1.0434e+00, 9.8175e-02, + 1DIAGNOSTIC, 10, -9.558553421565e-01, 2.401931943882e-03, 1.1429e+00, 9.9549e-02, + 1DIAGNOSTIC, 11, -9.573201389538e-01, 1.756351232925e-03, 1.2534e+00, 1.1044e-01, + 1DIAGNOSTIC, 12, -9.585761805390e-01, 1.303446332920e-03, 1.3606e+00, 1.0728e-01, + 1DIAGNOSTIC, 13, -9.595417141888e-01, 9.868224817311e-04, 1.4612e+00, 1.0050e-01, + 1DIAGNOSTIC, 14, -9.602584363154e-01, 7.635070647608e-04, 1.5591e+00, 9.7937e-02, + 1DIAGNOSTIC, 15, -9.609415802208e-01, 6.006742593162e-04, 1.6539e+00, 9.4763e-02, + 1DIAGNOSTIC, 16, -9.614216823810e-01, 4.737126320242e-04, 1.7566e+00, 1.0274e-01, + 1DIAGNOSTIC, 17, -9.618228858355e-01, 3.709244992647e-04, 1.8623e+00, 1.0568e-01, + 1DIAGNOSTIC, 18, -9.618117633724e-01, 2.827682224182e-04, 1.9606e+00, 9.8308e-02, + 1DIAGNOSTIC, 19, -9.618234378977e-01, 2.087520298658e-04, 2.0548e+00, 9.4267e-02, + 1DIAGNOSTIC, 20, -9.616392436733e-01, 1.443910437847e-04, 2.1580e+00, 1.0314e-01, + 1DIAGNOSTIC, 21, -9.617602520805e-01, 9.519512298630e-05, 2.2545e+00, 9.6485e-02, + 1DIAGNOSTIC, 22, -9.616162001898e-01, 5.656205759982e-05, 2.3492e+00, 9.4772e-02, + 1DIAGNOSTIC, 23, -9.617594387426e-01, 3.050447780780e-05, 2.4558e+00, 1.0656e-01, + 1DIAGNOSTIC, 24, -9.616316930979e-01, 1.109704305469e-05, 2.5602e+00, 1.0441e-01, + 1DIAGNOSTIC, 25, -9.616944874584e-01, 1.192077892065e-06, 2.6567e+00, 9.6496e-02, + 1DIAGNOSTIC, 26, -9.616033234387e-01, -3.630302122873e-06, 2.7537e+00, 9.6959e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.099240774693e-01, 1.797693134862e+308, 3.6093e+00, 8.5558e-01, + 1DIAGNOSTIC, 2, -9.140245543806e-01, 1.797693134862e+308, 4.2696e+00, 6.6038e-01, + 1DIAGNOSTIC, 3, -9.180661846608e-01, 1.797693134862e+308, 4.9481e+00, 6.7848e-01, + 1DIAGNOSTIC, 4, -9.217086670852e-01, 1.797693134862e+308, 5.6097e+00, 6.6160e-01, + 1DIAGNOSTIC, 5, -9.243937424998e-01, 1.797693134862e+308, 6.2609e+00, 6.5115e-01, + 1DIAGNOSTIC, 6, -9.264283808896e-01, 1.797693134862e+308, 6.9209e+00, 6.6006e-01, + 1DIAGNOSTIC, 7, -9.281576336792e-01, 1.797693134862e+308, 7.5909e+00, 6.6999e-01, + 1DIAGNOSTIC, 8, -9.296451509410e-01, 1.797693134862e+308, 8.2605e+00, 6.6961e-01, + 1DIAGNOSTIC, 9, -9.309390346064e-01, 1.797693134862e+308, 8.9233e+00, 6.6277e-01, + 1DIAGNOSTIC, 10, -9.319865711720e-01, 1.490069040640e-03, 9.5972e+00, 6.7390e-01, + 1DIAGNOSTIC, 11, -9.329060815579e-01, 1.128215886361e-03, 1.0265e+01, 6.6809e-01, + 1DIAGNOSTIC, 12, -9.337154773795e-01, 8.503813309825e-04, 1.0934e+01, 6.6916e-01, + 1DIAGNOSTIC, 13, -9.344374984632e-01, 6.499573443589e-04, 1.1587e+01, 6.5224e-01, + 1DIAGNOSTIC, 14, -9.350722773916e-01, 5.122061365012e-04, 1.2262e+01, 6.7489e-01, + 1DIAGNOSTIC, 15, -9.356287790641e-01, 4.119625319026e-04, 1.2903e+01, 6.4179e-01, + 1DIAGNOSTIC, 16, -9.361313023035e-01, 3.348013591640e-04, 1.3542e+01, 6.3858e-01, + 1DIAGNOSTIC, 17, -9.365818715345e-01, 2.749396100566e-04, 1.4211e+01, 6.6938e-01, + 1DIAGNOSTIC, 18, -9.369855828188e-01, 2.282996862882e-04, 1.4888e+01, 6.7645e-01, + 1DIAGNOSTIC, 19, -9.373578199443e-01, 1.921395786788e-04, 1.5533e+01, 6.4545e-01, + 1DIAGNOSTIC, 20, -9.376857977651e-01, 1.627016410288e-04, 1.6177e+01, 6.4409e-01, + 1DIAGNOSTIC, 21, -9.379827187337e-01, 1.385752142816e-04, 1.6847e+01, 6.6947e-01, + 1DIAGNOSTIC, 22, -9.382516704964e-01, 1.186541141754e-04, 1.7496e+01, 6.4946e-01, + 1DIAGNOSTIC, 23, -9.384946656512e-01, 1.021704179642e-04, 1.8138e+01, 6.4151e-01, + 1DIAGNOSTIC, 24, -9.387193941999e-01, 8.842619442825e-05, 1.8786e+01, 6.4808e-01, + 1DIAGNOSTIC, 25, -9.389329114689e-01, 7.689644627239e-05, 1.9462e+01, 6.7623e-01, + 1DIAGNOSTIC, 26, -9.391202100329e-01, 6.714231275459e-05, 2.0118e+01, 6.5570e-01, + 1DIAGNOSTIC, 27, -9.392927921983e-01, 5.886406444666e-05, 2.0791e+01, 6.7326e-01, + 1DIAGNOSTIC, 28, -9.394499119987e-01, 5.177260060520e-05, 2.1458e+01, 6.6684e-01, + 1DIAGNOSTIC, 29, -9.395950450847e-01, 4.576475353231e-05, 2.2106e+01, 6.4796e-01, + 1DIAGNOSTIC, 30, -9.397196833699e-01, 4.047576422260e-05, 2.2771e+01, 6.6501e-01, + 1DIAGNOSTIC, 31, -9.398381021004e-01, 3.583346393306e-05, 2.3448e+01, 6.7765e-01, + 1DIAGNOSTIC, 32, -9.399518759349e-01, 3.178622800008e-05, 2.4103e+01, 6.5493e-01, + 1DIAGNOSTIC, 33, -9.400561498471e-01, 2.822974351932e-05, 2.4752e+01, 6.4852e-01, + 1DIAGNOSTIC, 34, -9.401516795367e-01, 2.512604830887e-05, 2.5393e+01, 6.4131e-01, + 1DIAGNOSTIC, 35, -9.402382557062e-01, 2.248309834319e-05, 2.6034e+01, 6.4055e-01, + 1DIAGNOSTIC, 36, -9.403200259831e-01, 2.018456903432e-05, 2.6681e+01, 6.4715e-01, + 1DIAGNOSTIC, 37, -9.403943869542e-01, 1.817923001508e-05, 2.7327e+01, 6.4603e-01, + 1DIAGNOSTIC, 38, -9.404642944705e-01, 1.642474663229e-05, 2.7990e+01, 6.6253e-01, + 1DIAGNOSTIC, 39, -9.405292538057e-01, 1.489573176687e-05, 2.8659e+01, 6.6933e-01, + 1DIAGNOSTIC, 40, -9.405899153156e-01, 1.349311504885e-05, 2.9324e+01, 6.6513e-01, + 1DIAGNOSTIC, 41, -9.406467041000e-01, 1.223090123001e-05, 2.9984e+01, 6.6033e-01, + 1DIAGNOSTIC, 42, -9.406975852091e-01, 1.111267108835e-05, 3.0655e+01, 6.7039e-01, + 1DIAGNOSTIC, 43, -9.407466159110e-01, 1.012860771087e-05, 3.1317e+01, 6.6198e-01, + 1DIAGNOSTIC, 44, -9.407924933280e-01, 9.257323044989e-06, 3.1995e+01, 6.7793e-01, + 1DIAGNOSTIC, 45, -9.408352048406e-01, 8.470954304087e-06, 3.2649e+01, 6.5409e-01, + 1DIAGNOSTIC, 46, -9.408652497720e-01, 7.705320682127e-06, 3.3322e+01, 6.7344e-01, + 1DIAGNOSTIC, 47, -9.409029136418e-01, 7.018537500663e-06, 3.3977e+01, 6.5510e-01, + 1DIAGNOSTIC, 48, -9.409374527759e-01, 6.405589429617e-06, 3.4621e+01, 6.4388e-01, + 1DIAGNOSTIC, 49, -9.409753071550e-01, 5.896615311252e-06, 3.5264e+01, 6.4275e-01, + 1DIAGNOSTIC, 50, -9.410066578843e-01, 5.456620754851e-06, 3.5904e+01, 6.3969e-01, + 1DIAGNOSTIC, 51, -9.410351229341e-01, 5.074892448723e-06, 3.6543e+01, 6.3915e-01, + 1DIAGNOSTIC, 52, -9.410623990438e-01, 4.732637827132e-06, 3.7183e+01, 6.4035e-01, + 1DIAGNOSTIC, 53, -9.410932789074e-01, 4.459653559771e-06, 3.7837e+01, 6.5435e-01, + 1DIAGNOSTIC, 54, -9.411155461291e-01, 4.202836278000e-06, 3.8480e+01, 6.4262e-01, + 1DIAGNOSTIC, 55, -9.411376984377e-01, 3.964203749301e-06, 3.9114e+01, 6.3362e-01, + 1DIAGNOSTIC, 56, -9.411585418465e-01, 3.681678002711e-06, 3.9772e+01, 6.5884e-01, + 1DIAGNOSTIC, 57, -9.411783209191e-01, 3.412454560717e-06, 4.0442e+01, 6.7002e-01, + 1DIAGNOSTIC, 58, -9.411961163640e-01, 3.147543402464e-06, 4.1114e+01, 6.7108e-01, + 1DIAGNOSTIC, 59, -9.412127162164e-01, 2.918889383703e-06, 4.1789e+01, 6.7582e-01, + 1DIAGNOSTIC, 60, -9.412252134478e-01, 2.688681120015e-06, 4.2450e+01, 6.6063e-01, + 1DIAGNOSTIC, 61, -9.412393235585e-01, 2.468280073446e-06, 4.3114e+01, 6.6438e-01, + 1DIAGNOSTIC, 62, -9.412499352534e-01, 2.249786797449e-06, 4.3787e+01, 6.7255e-01, + 1DIAGNOSTIC, 63, -9.412603584254e-01, 2.068271241436e-06, 4.4450e+01, 6.6342e-01, + 1DIAGNOSTIC, 64, -9.412716386309e-01, 1.899271844210e-06, 4.5141e+01, 6.9054e-01, + 1DIAGNOSTIC, 65, -9.412810430059e-01, 1.745958125791e-06, 4.5810e+01, 6.6943e-01, + 1DIAGNOSTIC, 66, -9.412899617144e-01, 1.611536489067e-06, 4.6479e+01, 6.6852e-01, + 1DIAGNOSTIC, 67, -9.412986093712e-01, 1.499660998397e-06, 4.7144e+01, 6.6552e-01, + 1DIAGNOSTIC, 68, -9.413064484118e-01, 1.405315418371e-06, 4.7826e+01, 6.8141e-01, + 1DIAGNOSTIC, 69, -9.413133254848e-01, 1.325587820542e-06, 4.8491e+01, 6.6494e-01, + 1DIAGNOSTIC, 70, -9.413192332929e-01, 1.243388522591e-06, 4.9148e+01, 6.5731e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.802999715150e-01, 1.797693134862e+308, 5.4701e+01, 5.5531e+00, + 1DIAGNOSTIC, 2, -8.837762273089e-01, 1.797693134862e+308, 6.0032e+01, 5.3312e+00, + 1DIAGNOSTIC, 3, -8.873868425343e-01, 1.797693134862e+308, 6.5400e+01, 5.3677e+00, + 1DIAGNOSTIC, 4, -8.905640497644e-01, 1.797693134862e+308, 7.0767e+01, 5.3666e+00, + 1DIAGNOSTIC, 5, -8.936559416331e-01, 1.797693134862e+308, 7.6130e+01, 5.3634e+00, + 1DIAGNOSTIC, 6, -8.962424788934e-01, 1.797693134862e+308, 8.1448e+01, 5.3180e+00, + 1DIAGNOSTIC, 7, -8.987353847698e-01, 1.797693134862e+308, 8.6786e+01, 5.3377e+00, + 1DIAGNOSTIC, 8, -9.011279700241e-01, 1.797693134862e+308, 9.2165e+01, 5.3788e+00, + 1DIAGNOSTIC, 9, -9.033063884747e-01, 1.797693134862e+308, 9.7524e+01, 5.3594e+00, + 1DIAGNOSTIC, 10, -9.047927678633e-01, 1.765825974289e-03, 1.0294e+02, 5.4124e+00, + 1DIAGNOSTIC, 11, -9.061213418251e-01, 1.457656285918e-03, 1.0832e+02, 5.3824e+00, + 1DIAGNOSTIC, 12, -9.071039863309e-01, 1.187285863698e-03, 1.1371e+02, 5.3928e+00, + 1DIAGNOSTIC, 13, -9.080627015946e-01, 9.620179699133e-04, 1.1909e+02, 5.3762e+00, + 1DIAGNOSTIC, 14, -9.087461873988e-01, 7.680717669128e-04, 1.2446e+02, 5.3691e+00, + 1DIAGNOSTIC, 15, -9.094488984545e-01, 6.096585051564e-04, 1.2986e+02, 5.3988e+00, + 1DIAGNOSTIC, 16, -9.099191596310e-01, 4.752722830754e-04, 1.3525e+02, 5.3977e+00, + 1DIAGNOSTIC, 17, -9.104606245766e-01, 3.689978779012e-04, 1.4062e+02, 5.3690e+00, + 1DIAGNOSTIC, 18, -9.108045130360e-01, 2.879754062097e-04, 1.4599e+02, 5.3660e+00, + 1DIAGNOSTIC, 19, -9.112478919775e-01, 2.321850916572e-04, 1.5137e+02, 5.3813e+00, + 1DIAGNOSTIC, 20, -9.115246263198e-01, 1.879932672337e-04, 1.5678e+02, 5.4109e+00, + 1DIAGNOSTIC, 21, -9.119156592547e-01, 1.562679672765e-04, 1.6217e+02, 5.3887e+00, + 1DIAGNOSTIC, 22, -9.121549078532e-01, 1.302078918944e-04, 1.6753e+02, 5.3637e+00, + 1DIAGNOSTIC, 23, -9.123874420866e-01, 1.105512698147e-04, 1.7290e+02, 5.3632e+00, + 1DIAGNOSTIC, 24, -9.126241989404e-01, 9.421411911714e-05, 1.7824e+02, 5.3413e+00, + 1DIAGNOSTIC, 25, -9.128647965540e-01, 8.222727426613e-05, 1.8364e+02, 5.4045e+00, + 1DIAGNOSTIC, 26, -9.131095237737e-01, 7.204837826342e-05, 1.8903e+02, 5.3860e+00, + 1DIAGNOSTIC, 27, -9.133619066718e-01, 6.512369505475e-05, 1.9445e+02, 5.4244e+00, + 1DIAGNOSTIC, 28, -9.136243430746e-01, 5.936937008984e-05, 1.9980e+02, 5.3430e+00, + 1DIAGNOSTIC, 29, -9.138920833528e-01, 5.615740900014e-05, 2.0518e+02, 5.3816e+00, + 1DIAGNOSTIC, 30, -9.141670770278e-01, 5.361721279424e-05, 2.1054e+02, 5.3649e+00, + 1DIAGNOSTIC, 31, -9.144479451117e-01, 5.300421400484e-05, 2.1593e+02, 5.3858e+00, + 1DIAGNOSTIC, 32, -9.147335211818e-01, 5.258824424147e-05, 2.2131e+02, 5.3798e+00, + 1DIAGNOSTIC, 33, -9.150229382103e-01, 5.220319314148e-05, 2.2671e+02, 5.4059e+00, + 1DIAGNOSTIC, 34, -9.153185467695e-01, 5.182576287853e-05, 2.3207e+02, 5.3592e+00, + 1DIAGNOSTIC, 35, -9.156180212100e-01, 5.141220656666e-05, 2.3744e+02, 5.3720e+00, + 1DIAGNOSTIC, 36, -9.159184886391e-01, 5.090623520754e-05, 2.4277e+02, 5.3251e+00, + 1DIAGNOSTIC, 37, -9.162186263214e-01, 5.028754087107e-05, 2.4816e+02, 5.3930e+00, + 1DIAGNOSTIC, 38, -9.165195442441e-01, 4.958113314118e-05, 2.5351e+02, 5.3511e+00, + 1DIAGNOSTIC, 39, -9.168207787119e-01, 4.877732025336e-05, 2.5890e+02, 5.3898e+00, + 1DIAGNOSTIC, 40, -9.171155348631e-01, 4.784267607964e-05, 2.6429e+02, 5.3890e+00, + 1DIAGNOSTIC, 41, -9.174133672362e-01, 4.682829170824e-05, 2.6967e+02, 5.3744e+00, + 1DIAGNOSTIC, 42, -9.177032471774e-01, 4.569912953159e-05, 2.7503e+02, 5.3628e+00, + 1DIAGNOSTIC, 43, -9.179909971165e-01, 4.447627428359e-05, 2.8040e+02, 5.3729e+00, + 1DIAGNOSTIC, 44, -9.182714726412e-01, 4.317228473440e-05, 2.8577e+02, 5.3676e+00, + 1DIAGNOSTIC, 45, -9.185496974753e-01, 4.183183401596e-05, 2.9114e+02, 5.3718e+00, + 1DIAGNOSTIC, 46, -9.188208649512e-01, 4.045146786573e-05, 2.9650e+02, 5.3598e+00, + 1DIAGNOSTIC, 47, -9.190863366624e-01, 3.903834046566e-05, 3.0189e+02, 5.3863e+00, + 1DIAGNOSTIC, 48, -9.193484241012e-01, 3.763029270115e-05, 3.0724e+02, 5.3500e+00, + 1DIAGNOSTIC, 49, -9.195995045213e-01, 3.621600480026e-05, 3.1263e+02, 5.3953e+00, + 1DIAGNOSTIC, 50, -9.198372942749e-01, 3.473394750815e-05, 3.1800e+02, 5.3712e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.784257213307e-01, 1.797693134862e+308, 3.6189e+02, 4.3882e+01, + 1DIAGNOSTIC, 2, -8.799992092881e-01, 1.797693134862e+308, 4.0517e+02, 4.3287e+01, + 1DIAGNOSTIC, 3, -8.819369593183e-01, 1.797693134862e+308, 4.4869e+02, 4.3521e+01, + 1DIAGNOSTIC, 4, -8.836983660973e-01, 1.797693134862e+308, 4.9224e+02, 4.3547e+01, + 1DIAGNOSTIC, 5, -8.852630444415e-01, 1.797693134862e+308, 5.3567e+02, 4.3426e+01, + 1DIAGNOSTIC, 6, -8.866832376947e-01, 1.797693134862e+308, 5.7909e+02, 4.3421e+01, + 1DIAGNOSTIC, 7, -8.879902351594e-01, 1.797693134862e+308, 6.2258e+02, 4.3491e+01, + 1DIAGNOSTIC, 8, -8.891823745043e-01, 1.797693134862e+308, 6.6587e+02, 4.3294e+01, + 1DIAGNOSTIC, 9, -8.903081898726e-01, 1.797693134862e+308, 7.0950e+02, 4.3629e+01, + 1DIAGNOSTIC, 10, -8.913895404024e-01, 9.434519366058e-04, 7.5299e+02, 4.3491e+01, + 1DIAGNOSTIC, 11, -8.925357440037e-01, 8.041668869137e-04, 7.9678e+02, 4.3782e+01, + 1DIAGNOSTIC, 12, -8.935814857447e-01, 6.852200585764e-04, 8.4006e+02, 4.3288e+01, + 1DIAGNOSTIC, 13, -8.945986653308e-01, 5.949740079473e-04, 8.8341e+02, 4.3343e+01, + 1DIAGNOSTIC, 14, -8.955546592739e-01, 5.252964818464e-04, 9.2701e+02, 4.3600e+01, + 1DIAGNOSTIC, 15, -8.965120060418e-01, 4.703669212831e-04, 9.7086e+02, 4.3852e+01, + 1DIAGNOSTIC, 16, -8.974689268365e-01, 4.262885585225e-04, 1.0145e+03, 4.3625e+01, + 1DIAGNOSTIC, 17, -8.981909542184e-01, 3.859722754803e-04, 1.0596e+03, 4.5136e+01, + 1DIAGNOSTIC, 18, -8.990412142240e-01, 3.505918913889e-04, 1.1042e+03, 4.4545e+01, + 1DIAGNOSTIC, 19, -8.997288769329e-01, 3.167123917775e-04, 1.1492e+03, 4.5072e+01, + 1DIAGNOSTIC, 20, -9.004819336020e-01, 2.858431215781e-04, 1.1945e+03, 4.5292e+01, + Elapsed time (stage 2): 1195 + + +Total elapsed time: 1249 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:07:53 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:07:53 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:07:56 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:05 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 28808 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:05 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:09 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:09 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 28959 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:09 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:13 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:13 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29083 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:13 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29091 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:13 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:17 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:19 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:19 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:21 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:24 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:24 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:25 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:26 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:28 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:39 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:50 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC003 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:51 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC003 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:51 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC003 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:51 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30511 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:53 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:53 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30588 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:55 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:55 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC003_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 70.600 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/logs/proc_func_18-03-2024-9658.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:09:00 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC003 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/QC/sub-PNC003_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC003* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 70.667 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC003_ses-02 +========================reprocessing without filter=================== +sub-PNC003_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC003 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC003 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC003 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC003 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:09:05 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:09:05 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:11:17 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:13:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:13:41 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.41 (mm) at sub-brick 2 +++ Max delta displ in automask = 0.28 (mm) at sub-brick 181 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:26:25 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:26:43 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:28:55 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:31:07 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:33:24 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.631 -2.461 2.402 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.0 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.784 -2.925 4.607 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.8 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:38:12 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999998569488525 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:38:43 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55e1676cf6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.602, 56.3239, -119.923] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e167546730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e1676e6320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55e1676d2fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [81.4958, 115.5, -129.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e1676d8e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e167ee3230 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55e167ee15c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.602, 56.3239, -119.923] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e1676d53f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e168b1d450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55e167edfda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [81.4958, 115.5, -129.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e1676dc360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e169317780 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.919278815647e-01, 1.797693134862e+308, 4.5970e-02, 4.5970e-02, + 2DIAGNOSTIC, 2, -5.925919547191e-01, 1.797693134862e+308, 4.7277e-02, 1.3070e-03, + 2DIAGNOSTIC, 3, -5.957896183061e-01, 1.797693134862e+308, 4.8589e-02, 1.3120e-03, + 2DIAGNOSTIC, 4, -6.120285313695e-01, 1.797693134862e+308, 4.9912e-02, 1.3230e-03, + 2DIAGNOSTIC, 5, -6.378476780570e-01, 1.797693134862e+308, 5.2374e-02, 2.4621e-03, + 2DIAGNOSTIC, 6, -6.484135437559e-01, 1.797693134862e+308, 5.4174e-02, 1.8001e-03, + 2DIAGNOSTIC, 7, -6.499338360363e-01, 1.797693134862e+308, 5.5440e-02, 1.2660e-03, + 2DIAGNOSTIC, 8, -6.530823907175e-01, 1.797693134862e+308, 5.6654e-02, 1.2140e-03, + 2DIAGNOSTIC, 9, -6.538442871576e-01, 1.797693134862e+308, 5.7916e-02, 1.2619e-03, + 2DIAGNOSTIC, 10, -6.550999205509e-01, 7.970812172928e-03, 5.9410e-02, 1.4942e-03, + 2DIAGNOSTIC, 11, -6.560456673757e-01, 6.221431190522e-03, 6.0835e-02, 1.4250e-03, + 2DIAGNOSTIC, 12, -6.576038078164e-01, 4.317146448491e-03, 6.2947e-02, 2.1119e-03, + 2DIAGNOSTIC, 13, -6.579343141193e-01, 2.446913669796e-03, 6.4418e-02, 1.4708e-03, + 2DIAGNOSTIC, 14, -6.585042413109e-01, 1.147704064580e-03, 6.5884e-02, 1.4658e-03, + 2DIAGNOSTIC, 15, -6.596140925764e-01, 7.143236238481e-04, 6.7861e-02, 1.9770e-03, + 2DIAGNOSTIC, 16, -6.598540027439e-01, 5.704204289796e-04, 6.9371e-02, 1.5099e-03, + 2DIAGNOSTIC, 17, -6.604988903115e-01, 4.461595455039e-04, 7.1142e-02, 1.7710e-03, + 2DIAGNOSTIC, 18, -6.608985236545e-01, 3.822819874556e-04, 7.3266e-02, 2.1241e-03, + 2DIAGNOSTIC, 19, -6.612827850705e-01, 3.164259780943e-04, 7.4756e-02, 1.4901e-03, + 2DIAGNOSTIC, 20, -6.615658529879e-01, 2.616139172615e-04, 7.6224e-02, 1.4679e-03, + 2DIAGNOSTIC, 21, -6.620420716163e-01, 2.169756586443e-04, 7.7689e-02, 1.4651e-03, + 2DIAGNOSTIC, 22, -6.634116978895e-01, 2.149148405744e-04, 7.9380e-02, 1.6911e-03, + 2DIAGNOSTIC, 23, -6.638321731828e-01, 2.067010816547e-04, 8.1303e-02, 1.9228e-03, + 2DIAGNOSTIC, 24, -6.651362343250e-01, 2.139484554271e-04, 8.2985e-02, 1.6820e-03, + 2DIAGNOSTIC, 25, -6.657668880593e-01, 2.309940577182e-04, 8.4919e-02, 1.9341e-03, + 2DIAGNOSTIC, 26, -6.680386842461e-01, 2.671016177167e-04, 8.6381e-02, 1.4620e-03, + 2DIAGNOSTIC, 27, -6.754241296945e-01, 4.043354951398e-04, 8.8108e-02, 1.7271e-03, + 2DIAGNOSTIC, 28, -6.766315279149e-01, 5.154830337309e-04, 8.9800e-02, 1.6921e-03, + 2DIAGNOSTIC, 29, -6.769900673864e-01, 5.826095042700e-04, 9.1992e-02, 2.1920e-03, + 2DIAGNOSTIC, 30, -6.771307123482e-01, 5.979307474255e-04, 9.3727e-02, 1.7350e-03, + 2DIAGNOSTIC, 31, -6.773519415738e-01, 5.647169420703e-04, 9.5231e-02, 1.5042e-03, + 2DIAGNOSTIC, 32, -6.783713770196e-01, 5.110502317530e-04, 9.6758e-02, 1.5271e-03, + 2DIAGNOSTIC, 33, -6.785655524610e-01, 4.196358446060e-04, 9.8244e-02, 1.4858e-03, + 2DIAGNOSTIC, 34, -6.787851799385e-01, 3.151519655125e-04, 9.9748e-02, 1.5042e-03, + 2DIAGNOSTIC, 35, -6.792539149989e-01, 2.012572515436e-04, 1.0171e-01, 1.9619e-03, + 2DIAGNOSTIC, 36, -6.793863333865e-01, 1.012758886824e-04, 1.0322e-01, 1.5061e-03, + 2DIAGNOSTIC, 37, -6.796831185236e-01, 8.659179589950e-05, 1.0471e-01, 1.4920e-03, + 2DIAGNOSTIC, 38, -6.797946176849e-01, 7.939974661049e-05, 1.0670e-01, 1.9941e-03, + 2DIAGNOSTIC, 39, -6.799589710926e-01, 7.102237041202e-05, 1.0824e-01, 1.5349e-03, + 2DIAGNOSTIC, 40, -6.801247057551e-01, 5.970567381267e-05, 1.0983e-01, 1.5910e-03, + 2DIAGNOSTIC, 41, -6.803248149214e-01, 4.746085363087e-05, 1.1158e-01, 1.7560e-03, + 2DIAGNOSTIC, 42, -6.804282280905e-01, 4.284945461468e-05, 1.1310e-01, 1.5199e-03, + 2DIAGNOSTIC, 43, -6.807604376683e-01, 3.970806214853e-05, 1.1531e-01, 2.2080e-03, + 2DIAGNOSTIC, 44, -6.811317736294e-01, 3.861143439434e-05, 1.1682e-01, 1.5099e-03, + 2DIAGNOSTIC, 45, -6.812136384172e-01, 3.912984307257e-05, 1.1831e-01, 1.4901e-03, + 2DIAGNOSTIC, 46, -6.818990346794e-01, 4.357103620940e-05, 1.2005e-01, 1.7331e-03, + 2DIAGNOSTIC, 47, -6.824849184079e-01, 5.163731971713e-05, 1.2271e-01, 2.6610e-03, + 2DIAGNOSTIC, 48, -6.824874609738e-01, 5.537515135697e-05, 1.2842e-01, 5.7111e-03, + 2DIAGNOSTIC, 49, -6.824874607554e-01, 5.524028371977e-05, 1.3416e-01, 5.7409e-03, + 2DIAGNOSTIC, 50, -6.824874607554e-01, 5.134619002149e-05, 1.3685e-01, 2.6879e-03, + 2DIAGNOSTIC, 51, -6.824874607554e-01, 4.437154966236e-05, 1.3862e-01, 1.7760e-03, + 2DIAGNOSTIC, 52, -6.824874607554e-01, 3.419698516626e-05, 1.4034e-01, 1.7128e-03, + 2DIAGNOSTIC, 53, -6.824874607554e-01, 2.387057386524e-05, 1.4226e-01, 1.9262e-03, + 2DIAGNOSTIC, 54, -6.824874607554e-01, 1.476605487084e-05, 1.4418e-01, 1.9200e-03, + 2DIAGNOSTIC, 55, -6.824874607554e-01, 5.179980450149e-06, 1.4589e-01, 1.7099e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.146324261018e-01, 1.797693134862e+308, 2.0151e-01, 5.5623e-02, + 2DIAGNOSTIC, 2, -3.149233400527e-01, 1.797693134862e+308, 2.0485e-01, 3.3360e-03, + 2DIAGNOSTIC, 3, -3.166575106681e-01, 1.797693134862e+308, 2.0800e-01, 3.1459e-03, + 2DIAGNOSTIC, 4, -3.186511188228e-01, 1.797693134862e+308, 2.1155e-01, 3.5579e-03, + 2DIAGNOSTIC, 5, -3.220903862145e-01, 1.797693134862e+308, 2.1433e-01, 2.7752e-03, + 2DIAGNOSTIC, 6, -3.351625297110e-01, 1.797693134862e+308, 2.1680e-01, 2.4669e-03, + 2DIAGNOSTIC, 7, -3.440111550783e-01, 1.797693134862e+308, 2.1935e-01, 2.5489e-03, + 2DIAGNOSTIC, 8, -3.772721207665e-01, 1.797693134862e+308, 2.2256e-01, 3.2139e-03, + 2DIAGNOSTIC, 9, -3.824591393975e-01, 1.797693134862e+308, 2.2522e-01, 2.6629e-03, + 2DIAGNOSTIC, 10, -3.842651309540e-01, 1.543771040110e-02, 2.2773e-01, 2.5120e-03, + 2DIAGNOSTIC, 11, -3.907314489156e-01, 1.547338838771e-02, 2.3133e-01, 3.5951e-03, + 2DIAGNOSTIC, 12, -4.082232727425e-01, 1.524711559317e-02, 2.3467e-01, 3.3379e-03, + 2DIAGNOSTIC, 13, -4.309554522268e-01, 1.508343961595e-02, 2.3732e-01, 2.6510e-03, + 2DIAGNOSTIC, 14, -4.816921974993e-01, 1.636964997523e-02, 2.4198e-01, 4.6580e-03, + 2DIAGNOSTIC, 15, -4.855821522415e-01, 1.629673649802e-02, 2.4468e-01, 2.7001e-03, + 2DIAGNOSTIC, 16, -5.044191547805e-01, 1.624975540187e-02, 2.4733e-01, 2.6500e-03, + 2DIAGNOSTIC, 17, -5.310566017566e-01, 1.616111100806e-02, 2.5018e-01, 2.8570e-03, + 2DIAGNOSTIC, 18, -5.631147359328e-01, 1.708849855278e-02, 2.5261e-01, 2.4309e-03, + 2DIAGNOSTIC, 19, -5.679626002468e-01, 1.665386464240e-02, 2.5507e-01, 2.4521e-03, + 2DIAGNOSTIC, 20, -5.909559484780e-01, 1.558802730000e-02, 2.5816e-01, 3.0911e-03, + 2DIAGNOSTIC, 21, -6.043336004277e-01, 1.385083084027e-02, 2.6263e-01, 4.4692e-03, + 2DIAGNOSTIC, 22, -6.048512698038e-01, 1.157875212518e-02, 2.6537e-01, 2.7430e-03, + 2DIAGNOSTIC, 23, -6.051308287457e-01, 9.119282742744e-03, 2.6777e-01, 2.4021e-03, + 2DIAGNOSTIC, 24, -6.051947478060e-01, 7.445394963700e-03, 2.7021e-01, 2.4390e-03, + 2DIAGNOSTIC, 25, -6.052267362286e-01, 5.354278615890e-03, 2.7364e-01, 3.4311e-03, + 2DIAGNOSTIC, 26, -6.053082215512e-01, 3.410876446525e-03, 2.7623e-01, 2.5930e-03, + 2DIAGNOSTIC, 27, -6.053475023899e-01, 1.926116216206e-03, 2.7852e-01, 2.2840e-03, + 2DIAGNOSTIC, 28, -6.054668138330e-01, 1.097900174088e-03, 2.8078e-01, 2.2578e-03, + 2DIAGNOSTIC, 29, -6.055973781688e-01, 3.320411753346e-04, 2.8337e-01, 2.5971e-03, + 2DIAGNOSTIC, 30, -6.056033821687e-01, 4.553847581031e-05, 2.8595e-01, 2.5761e-03, + 2DIAGNOSTIC, 31, -6.056508226362e-01, 3.181023464261e-05, 2.8825e-01, 2.2969e-03, + 2DIAGNOSTIC, 32, -6.056929277381e-01, 2.632273321537e-05, 2.9056e-01, 2.3181e-03, + 2DIAGNOSTIC, 33, -6.057651085859e-01, 2.498205031055e-05, 2.9317e-01, 2.6019e-03, + 2DIAGNOSTIC, 34, -6.057852281912e-01, 2.286589388509e-05, 2.9710e-01, 3.9320e-03, + 2DIAGNOSTIC, 35, -6.057965101391e-01, 1.955543567573e-05, 3.0072e-01, 3.6201e-03, + 2DIAGNOSTIC, 36, -6.057965417627e-01, 1.604666247210e-05, 3.0401e-01, 3.2921e-03, + 2DIAGNOSTIC, 37, -6.057965435564e-01, 1.190926012142e-05, 3.0729e-01, 3.2780e-03, + 2DIAGNOSTIC, 38, -6.057965436590e-01, 8.700561835863e-06, 3.1055e-01, 3.2649e-03, + 2DIAGNOSTIC, 39, -6.057965436653e-01, 6.831149996209e-06, 3.1381e-01, 3.2609e-03, + 2DIAGNOSTIC, 40, -6.057965436658e-01, 4.600157092791e-06, 3.1704e-01, 3.2220e-03, + 2DIAGNOSTIC, 41, -6.057965436658e-01, 2.788675444142e-06, 3.2031e-01, 3.2692e-03, + 2DIAGNOSTIC, 42, -6.057965436658e-01, 1.430435897735e-06, 3.2323e-01, 2.9280e-03, + 2DIAGNOSTIC, 43, -6.057965436658e-01, 1.009110670826e-06, 3.2589e-01, 2.6519e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.630805653899e-01, 1.797693134862e+308, 3.9508e-01, 6.9195e-02, + 2DIAGNOSTIC, 2, -4.634700508053e-01, 1.797693134862e+308, 4.0775e-01, 1.2668e-02, + 2DIAGNOSTIC, 3, -4.641109527249e-01, 1.797693134862e+308, 4.2112e-01, 1.3371e-02, + 2DIAGNOSTIC, 4, -4.654379891357e-01, 1.797693134862e+308, 4.3460e-01, 1.3481e-02, + 2DIAGNOSTIC, 5, -4.669818443393e-01, 1.797693134862e+308, 4.4799e-01, 1.3391e-02, + 2DIAGNOSTIC, 6, -4.682041285789e-01, 1.797693134862e+308, 4.6129e-01, 1.3302e-02, + 2DIAGNOSTIC, 7, -4.690524020973e-01, 1.797693134862e+308, 4.7874e-01, 1.7449e-02, + 2DIAGNOSTIC, 8, -4.713239812817e-01, 1.797693134862e+308, 5.1343e-01, 3.4692e-02, + 2DIAGNOSTIC, 9, -4.713246443989e-01, 1.797693134862e+308, 5.2675e-01, 1.3312e-02, + 2DIAGNOSTIC, 10, -4.713352453287e-01, 1.345121247893e-03, 5.4101e-01, 1.4268e-02, + 2DIAGNOSTIC, 11, -4.713530632355e-01, 1.134865440761e-03, 5.5517e-01, 1.4158e-02, + 2DIAGNOSTIC, 12, -4.713834310888e-01, 8.794503368247e-04, 5.6845e-01, 1.3277e-02, + 2DIAGNOSTIC, 13, -4.714361303897e-01, 6.148979284553e-04, 5.8135e-01, 1.2902e-02, + 2DIAGNOSTIC, 14, -4.715031383571e-01, 3.920734605236e-04, 5.9361e-01, 1.2260e-02, + 2DIAGNOSTIC, 15, -4.716327893066e-01, 2.316521046053e-04, 6.0635e-01, 1.2734e-02, + 2DIAGNOSTIC, 16, -4.717708919616e-01, 1.219071437410e-04, 6.1797e-01, 1.1623e-02, + 2DIAGNOSTIC, 17, -4.718574666374e-01, 4.503640612782e-05, 6.2912e-01, 1.1147e-02, + 2DIAGNOSTIC, 18, -4.719455800977e-01, 5.217648294153e-05, 6.4167e-01, 1.2555e-02, + 2DIAGNOSTIC, 19, -4.720945443976e-01, 5.863837932396e-05, 6.5480e-01, 1.3133e-02, + 2DIAGNOSTIC, 20, -4.722419427871e-01, 6.381788954267e-05, 6.7216e-01, 1.7360e-02, + 2DIAGNOSTIC, 21, -4.722864802204e-01, 6.440897436177e-05, 6.8375e-01, 1.1588e-02, + 2DIAGNOSTIC, 22, -4.723424576775e-01, 6.150550698117e-05, 6.9454e-01, 1.0792e-02, + 2DIAGNOSTIC, 23, -4.724199477228e-01, 5.668393827256e-05, 7.0571e-01, 1.1165e-02, + 2DIAGNOSTIC, 24, -4.726334508790e-01, 5.402764500221e-05, 7.1965e-01, 1.3946e-02, + 2DIAGNOSTIC, 25, -4.727170558426e-01, 5.157745089576e-05, 7.3083e-01, 1.1178e-02, + 2DIAGNOSTIC, 26, -4.729788890384e-01, 5.390390179547e-05, 7.4666e-01, 1.5831e-02, + 2DIAGNOSTIC, 27, -4.730997032224e-01, 5.567602431528e-05, 7.5961e-01, 1.2946e-02, + 2DIAGNOSTIC, 28, -4.731325658952e-01, 5.472672907501e-05, 7.7060e-01, 1.0992e-02, + 2DIAGNOSTIC, 29, -4.735615655254e-01, 6.077268958023e-05, 7.8159e-01, 1.0986e-02, + 2DIAGNOSTIC, 30, -4.737797789311e-01, 6.787960084288e-05, 7.9409e-01, 1.2499e-02, + 2DIAGNOSTIC, 31, -4.739314529491e-01, 7.196538857340e-05, 8.0693e-01, 1.2845e-02, + 2DIAGNOSTIC, 32, -4.740133779257e-01, 7.174731569772e-05, 8.2141e-01, 1.4482e-02, + 2DIAGNOSTIC, 33, -4.741336888655e-01, 6.844199652825e-05, 8.3205e-01, 1.0636e-02, + 2DIAGNOSTIC, 34, -4.742446299900e-01, 6.458818198531e-05, 8.4419e-01, 1.2135e-02, + 2DIAGNOSTIC, 35, -4.745163617923e-01, 6.082935587179e-05, 8.5657e-01, 1.2389e-02, + 2DIAGNOSTIC, 36, -4.746690101594e-01, 5.845598563137e-05, 8.7155e-01, 1.4976e-02, + 2DIAGNOSTIC, 37, -4.747266522906e-01, 5.374146891590e-05, 8.8210e-01, 1.0546e-02, + 2DIAGNOSTIC, 38, -4.749771848641e-01, 4.865208554940e-05, 8.9443e-01, 1.2337e-02, + 2DIAGNOSTIC, 39, -4.751195973136e-01, 4.793900234274e-05, 9.0951e-01, 1.5081e-02, + 2DIAGNOSTIC, 40, -4.751212463782e-01, 4.597444412548e-05, 9.2143e-01, 1.1919e-02, + 2DIAGNOSTIC, 41, -4.751445206888e-01, 4.240889886937e-05, 9.3283e-01, 1.1392e-02, + 2DIAGNOSTIC, 42, -4.751527169514e-01, 3.635427250524e-05, 9.4319e-01, 1.0361e-02, + 2DIAGNOSTIC, 43, -4.751665607252e-01, 2.902982243948e-05, 9.5380e-01, 1.0609e-02, + 2DIAGNOSTIC, 44, -4.751920174157e-01, 2.109053450113e-05, 9.7504e-01, 2.1243e-02, + 2DIAGNOSTIC, 45, -4.751928653104e-01, 1.519725743586e-05, 9.8527e-01, 1.0227e-02, + 2DIAGNOSTIC, 46, -4.751921791872e-01, 1.021402752110e-05, 9.9550e-01, 1.0237e-02, + 2DIAGNOSTIC, 47, -4.751949931387e-01, 5.239832884571e-06, 1.0068e+00, 1.1333e-02, + 2DIAGNOSTIC, 48, -4.751973163625e-01, 3.156355490468e-06, 1.0184e+00, 1.1568e-02, + 2DIAGNOSTIC, 49, -4.751948972792e-01, 2.637188515370e-06, 1.0292e+00, 1.0782e-02, + 2DIAGNOSTIC, 50, -4.751957307705e-01, 1.974925885849e-06, 1.0408e+00, 1.1629e-02, + 2DIAGNOSTIC, 51, -4.752034899694e-01, 1.580758548447e-06, 1.0511e+00, 1.0324e-02, + 2DIAGNOSTIC, 52, -4.752185380882e-01, 1.374869427907e-06, 1.0613e+00, 1.0148e-02, + 2DIAGNOSTIC, 53, -4.752482963506e-01, 1.586288191788e-06, 1.0718e+00, 1.0531e-02, + 2DIAGNOSTIC, 54, -4.753335168623e-01, 2.922522388732e-06, 1.0862e+00, 1.4421e-02, + 2DIAGNOSTIC, 55, -4.753484915055e-01, 4.139707725396e-06, 1.1167e+00, 3.0510e-02, + 2DIAGNOSTIC, 56, -4.753484939036e-01, 4.972645491642e-06, 1.1287e+00, 1.1997e-02, + 2DIAGNOSTIC, 57, -4.753485629273e-01, 5.395191721977e-06, 1.1393e+00, 1.0603e-02, + 2DIAGNOSTIC, 58, -4.753486789469e-01, 5.359254454072e-06, 1.1496e+00, 1.0270e-02, + 2DIAGNOSTIC, 59, -4.753488746316e-01, 4.826454159095e-06, 1.1601e+00, 1.0496e-02, + 2DIAGNOSTIC, 60, -4.753492050635e-01, 3.909788840361e-06, 1.1707e+00, 1.0584e-02, + 2DIAGNOSTIC, 61, -4.753497505353e-01, 2.792665045069e-06, 1.1810e+00, 1.0325e-02, + 2DIAGNOSTIC, 62, -4.753506175460e-01, 1.651688626477e-06, 1.1913e+00, 1.0287e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.963842269167e-01, 1.797693134862e+308, 1.4108e+00, 2.1946e-01, + Elapsed time (stage 0): 1.4397e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.637632008566e-01, 1.797693134862e+308, 3.5971e-02, 3.5970e-02, + 2DIAGNOSTIC, 2, -9.662126626590e-01, 1.797693134862e+308, 3.7222e-02, 1.2510e-03, + 2DIAGNOSTIC, 3, -9.694543834036e-01, 1.797693134862e+308, 3.8543e-02, 1.3208e-03, + 2DIAGNOSTIC, 4, -9.721082302245e-01, 1.797693134862e+308, 3.9823e-02, 1.2798e-03, + 2DIAGNOSTIC, 5, -9.774921377979e-01, 1.797693134862e+308, 4.1363e-02, 1.5399e-03, + 2DIAGNOSTIC, 6, -1.002092667846e+00, 1.797693134862e+308, 4.3184e-02, 1.8210e-03, + 2DIAGNOSTIC, 7, -1.003325251763e+00, 1.797693134862e+308, 4.4734e-02, 1.5500e-03, + 2DIAGNOSTIC, 8, -1.006640704310e+00, 1.797693134862e+308, 4.6490e-02, 1.7560e-03, + 2DIAGNOSTIC, 9, -1.011003983246e+00, 1.797693134862e+308, 4.7989e-02, 1.4992e-03, + 2DIAGNOSTIC, 10, -1.011145029135e+00, 3.777788423347e-03, 4.9374e-02, 1.3850e-03, + 2DIAGNOSTIC, 11, -1.015370824490e+00, 3.306930053396e-03, 5.1006e-02, 1.6320e-03, + 2DIAGNOSTIC, 12, -1.016734907000e+00, 2.707848660560e-03, 5.2783e-02, 1.7769e-03, + 2DIAGNOSTIC, 13, -1.018158209864e+00, 2.068654977963e-03, 5.4377e-02, 1.5941e-03, + 2DIAGNOSTIC, 14, -1.019179311462e+00, 1.412612412250e-03, 5.5697e-02, 1.3199e-03, + 2DIAGNOSTIC, 15, -1.019167594691e+00, 8.067600475695e-04, 5.7025e-02, 1.3280e-03, + 2DIAGNOSTIC, 16, -1.020017573442e+00, 6.573648125350e-04, 5.8473e-02, 1.4479e-03, + 2DIAGNOSTIC, 17, -1.020946271227e+00, 5.001649936870e-04, 5.9899e-02, 1.4260e-03, + 2DIAGNOSTIC, 18, -1.022103137065e+00, 3.836051209913e-04, 6.1501e-02, 1.6019e-03, + 2DIAGNOSTIC, 19, -1.022896836291e+00, 3.216763057628e-04, 6.2901e-02, 1.4009e-03, + 2DIAGNOSTIC, 20, -1.022557900510e+00, 2.323956308377e-04, 6.4874e-02, 1.9729e-03, + 2DIAGNOSTIC, 21, -1.023059383638e+00, 1.941510970839e-04, 6.6242e-02, 1.3671e-03, + 2DIAGNOSTIC, 22, -1.023325967404e+00, 1.616803106730e-04, 6.7839e-02, 1.5979e-03, + 2DIAGNOSTIC, 23, -1.024217594495e+00, 1.449185820975e-04, 6.9632e-02, 1.7929e-03, + 2DIAGNOSTIC, 24, -1.025414890635e+00, 1.421497713866e-04, 7.1021e-02, 1.3890e-03, + 2DIAGNOSTIC, 25, -1.025044472382e+00, 1.219442042339e-04, 7.2398e-02, 1.3771e-03, + 2DIAGNOSTIC, 26, -1.025385546937e+00, 1.052261417894e-04, 7.4462e-02, 2.0640e-03, + 2DIAGNOSTIC, 27, -1.025563975195e+00, 9.117296990348e-05, 7.5811e-02, 1.3490e-03, + 2DIAGNOSTIC, 28, -1.026006662539e+00, 8.526736793182e-05, 7.7960e-02, 2.1491e-03, + 2DIAGNOSTIC, 29, -1.026247822127e+00, 8.180391295662e-05, 8.0012e-02, 2.0511e-03, + 2DIAGNOSTIC, 30, -1.025570715671e+00, 6.147864392694e-05, 8.2592e-02, 2.5799e-03, + 2DIAGNOSTIC, 31, -1.025684496701e+00, 4.277126863276e-05, 8.4593e-02, 2.0010e-03, + 2DIAGNOSTIC, 32, -1.025723639639e+00, 2.371099886242e-05, 8.7088e-02, 2.4951e-03, + 2DIAGNOSTIC, 33, -1.025752946112e+00, 1.105185849194e-05, 8.8787e-02, 1.6990e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.534635551518e-01, 1.797693134862e+308, 1.3446e-01, 4.5674e-02, + 2DIAGNOSTIC, 2, -6.541264707386e-01, 1.797693134862e+308, 1.3734e-01, 2.8830e-03, + 2DIAGNOSTIC, 3, -6.574761542858e-01, 1.797693134862e+308, 1.4028e-01, 2.9361e-03, + 2DIAGNOSTIC, 4, -6.619295790863e-01, 1.797693134862e+308, 1.4291e-01, 2.6262e-03, + 2DIAGNOSTIC, 5, -6.678255892866e-01, 1.797693134862e+308, 1.4520e-01, 2.2910e-03, + 2DIAGNOSTIC, 6, -6.743913520568e-01, 1.797693134862e+308, 1.4748e-01, 2.2838e-03, + 2DIAGNOSTIC, 7, -6.865554853081e-01, 1.797693134862e+308, 1.4995e-01, 2.4729e-03, + 2DIAGNOSTIC, 8, -7.001580123416e-01, 1.797693134862e+308, 1.5277e-01, 2.8191e-03, + 2DIAGNOSTIC, 9, -7.273795778716e-01, 1.797693134862e+308, 1.5640e-01, 3.6280e-03, + 2DIAGNOSTIC, 10, -7.293427724075e-01, 7.613396102529e-03, 1.5929e-01, 2.8858e-03, + 2DIAGNOSTIC, 11, -7.327044975630e-01, 7.702816370566e-03, 1.6199e-01, 2.7070e-03, + 2DIAGNOSTIC, 12, -7.363023548120e-01, 7.237991109245e-03, 1.6466e-01, 2.6681e-03, + 2DIAGNOSTIC, 13, -7.382948230096e-01, 6.354828002003e-03, 1.6734e-01, 2.6779e-03, + 2DIAGNOSTIC, 14, -7.415495463323e-01, 5.242998062649e-03, 1.7024e-01, 2.9020e-03, + 2DIAGNOSTIC, 15, -7.457327851240e-01, 4.083445196372e-03, 1.7402e-01, 3.7780e-03, + 2DIAGNOSTIC, 16, -7.468742257792e-01, 2.902565840992e-03, 1.7670e-01, 2.6782e-03, + 2DIAGNOSTIC, 17, -7.484038798221e-01, 1.925724454564e-03, 1.7960e-01, 2.9061e-03, + 2DIAGNOSTIC, 18, -7.496384433261e-01, 1.200893461099e-03, 1.8383e-01, 4.2300e-03, + 2DIAGNOSTIC, 19, -7.522060674182e-01, 1.071924694243e-03, 1.8696e-01, 3.1230e-03, + 2DIAGNOSTIC, 20, -7.553188112367e-01, 9.555743997510e-04, 1.9116e-01, 4.2081e-03, + 2DIAGNOSTIC, 21, -7.557325944299e-01, 8.317758392468e-04, 1.9397e-01, 2.8059e-03, + 2DIAGNOSTIC, 22, -7.562471254645e-01, 7.181116360949e-04, 1.9654e-01, 2.5730e-03, + 2DIAGNOSTIC, 23, -7.566143215174e-01, 5.881900732043e-04, 1.9943e-01, 2.8899e-03, + 2DIAGNOSTIC, 24, -7.567233166277e-01, 4.677916801002e-04, 2.0196e-01, 2.5232e-03, + 2DIAGNOSTIC, 25, -7.569565064772e-01, 3.825934263675e-04, 2.0449e-01, 2.5351e-03, + 2DIAGNOSTIC, 26, -7.571245700540e-01, 2.881527210227e-04, 2.0798e-01, 3.4931e-03, + 2DIAGNOSTIC, 27, -7.573080862829e-01, 1.994472914414e-04, 2.1054e-01, 2.5580e-03, + 2DIAGNOSTIC, 28, -7.573935266116e-01, 1.166357670549e-04, 2.1308e-01, 2.5370e-03, + 2DIAGNOSTIC, 29, -7.574942823851e-01, 6.383658545602e-05, 2.1630e-01, 3.2220e-03, + 2DIAGNOSTIC, 30, -7.575482557034e-01, 4.996709275380e-05, 2.1933e-01, 3.0301e-03, + 2DIAGNOSTIC, 31, -7.575688706979e-01, 3.772517417969e-05, 2.2221e-01, 2.8830e-03, + 2DIAGNOSTIC, 32, -7.575878262130e-01, 2.920908595015e-05, 2.2468e-01, 2.4619e-03, + 2DIAGNOSTIC, 33, -7.576315890858e-01, 2.341085713011e-05, 2.2714e-01, 2.4610e-03, + 2DIAGNOSTIC, 34, -7.577081888326e-01, 1.791015018649e-05, 2.2964e-01, 2.5032e-03, + 2DIAGNOSTIC, 35, -7.578560331420e-01, 1.531040898858e-05, 2.3211e-01, 2.4669e-03, + 2DIAGNOSTIC, 36, -7.586348517972e-01, 2.163472105782e-05, 2.3549e-01, 3.3820e-03, + 2DIAGNOSTIC, 37, -7.590842857035e-01, 3.205302555132e-05, 2.3791e-01, 2.4240e-03, + 2DIAGNOSTIC, 38, -7.602380497008e-01, 5.152112098895e-05, 2.4123e-01, 3.3190e-03, + 2DIAGNOSTIC, 39, -7.606184999113e-01, 6.972700303663e-05, 2.4372e-01, 2.4831e-03, + 2DIAGNOSTIC, 40, -7.615335817978e-01, 8.983532918099e-05, 2.4619e-01, 2.4710e-03, + 2DIAGNOSTIC, 41, -7.619941726298e-01, 1.048122750101e-04, 2.4895e-01, 2.7649e-03, + 2DIAGNOSTIC, 42, -7.622508520611e-01, 1.115790150842e-04, 2.5200e-01, 3.0451e-03, + 2DIAGNOSTIC, 43, -7.623261554632e-01, 1.085358787423e-04, 2.5473e-01, 2.7351e-03, + 2DIAGNOSTIC, 44, -7.626620870442e-01, 9.901053449385e-05, 2.5718e-01, 2.4478e-03, + 2DIAGNOSTIC, 45, -7.628170367406e-01, 8.293929659424e-05, 2.6004e-01, 2.8608e-03, + 2DIAGNOSTIC, 46, -7.629430603556e-01, 6.725932333870e-05, 2.6261e-01, 2.5671e-03, + 2DIAGNOSTIC, 47, -7.631714170386e-01, 5.131134767403e-05, 2.6547e-01, 2.8660e-03, + 2DIAGNOSTIC, 48, -7.633851511852e-01, 4.215956403972e-05, 2.6830e-01, 2.8291e-03, + 2DIAGNOSTIC, 49, -7.634723057800e-01, 3.289335398942e-05, 2.7106e-01, 2.7599e-03, + 2DIAGNOSTIC, 50, -7.635444251290e-01, 2.842325240424e-05, 2.7411e-01, 3.0439e-03, + 2DIAGNOSTIC, 51, -7.635554684363e-01, 2.500209461713e-05, 2.7652e-01, 2.4168e-03, + 2DIAGNOSTIC, 52, -7.635833125580e-01, 2.148647018082e-05, 2.7923e-01, 2.7089e-03, + 2DIAGNOSTIC, 53, -7.635954949120e-01, 1.666672743853e-05, 2.8196e-01, 2.7232e-03, + 2DIAGNOSTIC, 54, -7.636223427338e-01, 1.305057610755e-05, 2.8438e-01, 2.4211e-03, + 2DIAGNOSTIC, 55, -7.636838776696e-01, 9.886727199097e-06, 2.8800e-01, 3.6230e-03, + 2DIAGNOSTIC, 56, -7.637037658373e-01, 6.913204896694e-06, 2.9087e-01, 2.8658e-03, + 2DIAGNOSTIC, 57, -7.637120093124e-01, 4.999301594026e-06, 2.9367e-01, 2.8059e-03, + 2DIAGNOSTIC, 58, -7.637371293954e-01, 4.295257804605e-06, 2.9689e-01, 3.2179e-03, + 2DIAGNOSTIC, 59, -7.637515941965e-01, 3.898353273631e-06, 2.9959e-01, 2.7030e-03, + 2DIAGNOSTIC, 60, -7.637567781559e-01, 3.678911393017e-06, 3.0225e-01, 2.6619e-03, + 2DIAGNOSTIC, 61, -7.637654935836e-01, 3.286539826688e-06, 3.0487e-01, 2.6181e-03, + 2DIAGNOSTIC, 62, -7.637862203266e-01, 2.945547478986e-06, 3.0783e-01, 2.9581e-03, + 2DIAGNOSTIC, 63, -7.638259405090e-01, 2.693091827207e-06, 3.1105e-01, 3.2198e-03, + 2DIAGNOSTIC, 64, -7.641393084463e-01, 4.249840770770e-06, 3.1430e-01, 3.2480e-03, + 2DIAGNOSTIC, 65, -7.642405376599e-01, 6.302003034010e-06, 3.1717e-01, 2.8670e-03, + 2DIAGNOSTIC, 66, -7.643981329192e-01, 8.764829878709e-06, 3.2001e-01, 2.8450e-03, + 2DIAGNOSTIC, 67, -7.644415035429e-01, 1.065357189363e-05, 3.2290e-01, 2.8901e-03, + 2DIAGNOSTIC, 68, -7.644382662277e-01, 1.162927008645e-05, 3.2547e-01, 2.5711e-03, + 2DIAGNOSTIC, 69, -7.644528981897e-01, 1.164900809068e-05, 3.2839e-01, 2.9218e-03, + 2DIAGNOSTIC, 70, -7.644764043498e-01, 1.073262348132e-05, 3.3098e-01, 2.5859e-03, + 2DIAGNOSTIC, 71, -7.645456689538e-01, 9.276840601360e-06, 3.3384e-01, 2.8589e-03, + 2DIAGNOSTIC, 72, -7.645650074565e-01, 7.231484379417e-06, 3.3667e-01, 2.8350e-03, + 2DIAGNOSTIC, 73, -7.645872286656e-01, 4.887373237054e-06, 3.3954e-01, 2.8710e-03, + 2DIAGNOSTIC, 74, -7.646625070660e-01, 4.174444744119e-06, 3.4269e-01, 3.1459e-03, + 2DIAGNOSTIC, 75, -7.646873008435e-01, 3.726393779933e-06, 3.4591e-01, 3.2201e-03, + 2DIAGNOSTIC, 76, -7.646892736252e-01, 3.760385421556e-06, 3.4995e-01, 4.0379e-03, + 2DIAGNOSTIC, 77, -7.646982390350e-01, 3.736823351556e-06, 3.5367e-01, 3.7231e-03, + 2DIAGNOSTIC, 78, -7.646985182798e-01, 3.381579652705e-06, 3.5697e-01, 3.2978e-03, + 2DIAGNOSTIC, 79, -7.646815733458e-01, 2.734081172273e-06, 3.6008e-01, 3.1118e-03, + 2DIAGNOSTIC, 80, -7.646824445449e-01, 1.987326956230e-06, 3.6965e-01, 9.5670e-03, + 2DIAGNOSTIC, 81, -7.646824445432e-01, 1.433333182803e-06, 3.7626e-01, 6.6080e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.960101921535e-01, 1.797693134862e+308, 4.4457e-01, 6.8314e-02, + 2DIAGNOSTIC, 2, -5.964610016830e-01, 1.797693134862e+308, 4.5629e-01, 1.1724e-02, + 2DIAGNOSTIC, 3, -5.970538901763e-01, 1.797693134862e+308, 4.6785e-01, 1.1558e-02, + 2DIAGNOSTIC, 4, -5.975883550115e-01, 1.797693134862e+308, 4.7991e-01, 1.2056e-02, + 2DIAGNOSTIC, 5, -5.979314110167e-01, 1.797693134862e+308, 4.9156e-01, 1.1656e-02, + 2DIAGNOSTIC, 6, -5.985212518437e-01, 1.797693134862e+308, 5.0445e-01, 1.2883e-02, + 2DIAGNOSTIC, 7, -5.998685818344e-01, 1.797693134862e+308, 5.2655e-01, 2.2101e-02, + 2DIAGNOSTIC, 8, -5.998769335955e-01, 1.797693134862e+308, 5.3795e-01, 1.1405e-02, + 2DIAGNOSTIC, 9, -5.999282573138e-01, 1.797693134862e+308, 5.4940e-01, 1.1443e-02, + 2DIAGNOSTIC, 10, -6.000063079675e-01, 4.862261945900e-04, 5.6114e-01, 1.1740e-02, + 2DIAGNOSTIC, 11, -6.001158892907e-01, 3.917736628185e-04, 5.7303e-01, 1.1891e-02, + 2DIAGNOSTIC, 12, -6.002528596216e-01, 3.002535492163e-04, 5.8486e-01, 1.1836e-02, + 2DIAGNOSTIC, 13, -6.004068977064e-01, 2.229486555329e-04, 5.9664e-01, 1.1779e-02, + 2DIAGNOSTIC, 14, -6.006851568819e-01, 1.648146194534e-04, 6.0989e-01, 1.3247e-02, + 2DIAGNOSTIC, 15, -6.008553868448e-01, 1.156504000217e-04, 6.2305e-01, 1.3157e-02, + 2DIAGNOSTIC, 16, -6.010216590258e-01, 8.348862884590e-05, 6.3624e-01, 1.3189e-02, + 2DIAGNOSTIC, 17, -6.010678086880e-01, 8.649991487667e-05, 6.4818e-01, 1.1940e-02, + 2DIAGNOSTIC, 18, -6.011361013814e-01, 8.339237725783e-05, 6.6144e-01, 1.3264e-02, + 2DIAGNOSTIC, 19, -6.012194451824e-01, 7.632827322049e-05, 6.7514e-01, 1.3700e-02, + 2DIAGNOSTIC, 20, -6.013086733959e-01, 6.689830739282e-05, 6.8727e-01, 1.2128e-02, + 2DIAGNOSTIC, 21, -6.013466414032e-01, 5.558041596618e-05, 7.0220e-01, 1.4929e-02, + 2DIAGNOSTIC, 22, -6.013507680431e-01, 4.331667437451e-05, 7.1386e-01, 1.1667e-02, + 2DIAGNOSTIC, 23, -6.013563029821e-01, 3.142980814668e-05, 7.2498e-01, 1.1115e-02, + 2DIAGNOSTIC, 24, -6.013700413934e-01, 2.341310894922e-05, 7.3897e-01, 1.3996e-02, + 2DIAGNOSTIC, 25, -6.013787710093e-01, 1.725615464725e-05, 7.5015e-01, 1.1177e-02, + 2DIAGNOSTIC, 26, -6.013896716511e-01, 1.329665636712e-05, 7.6225e-01, 1.2099e-02, + 2DIAGNOSTIC, 27, -6.014183501078e-01, 9.811956461547e-06, 7.7674e-01, 1.4493e-02, + 2DIAGNOSTIC, 28, -6.014394292329e-01, 7.250653971329e-06, 7.9056e-01, 1.3817e-02, + 2DIAGNOSTIC, 29, -6.014530884496e-01, 5.834088098490e-06, 8.0394e-01, 1.3382e-02, + 2DIAGNOSTIC, 30, -6.016702251622e-01, 8.886618008554e-06, 8.1646e-01, 1.2514e-02, + 2DIAGNOSTIC, 31, -6.017459706637e-01, 1.264856802762e-05, 8.2907e-01, 1.2616e-02, + 2DIAGNOSTIC, 32, -6.017708655318e-01, 1.550637712184e-05, 8.4244e-01, 1.3363e-02, + 2DIAGNOSTIC, 33, -6.017964170405e-01, 1.730499067446e-05, 8.5484e-01, 1.2402e-02, + 2DIAGNOSTIC, 34, -6.018178922074e-01, 1.793708988901e-05, 8.6718e-01, 1.2345e-02, + 2DIAGNOSTIC, 35, -6.018997219063e-01, 1.809483328750e-05, 8.8575e-01, 1.8571e-02, + 2DIAGNOSTIC, 36, -6.019079143867e-01, 1.680558031447e-05, 8.9935e-01, 1.3597e-02, + 2DIAGNOSTIC, 37, -6.019245629337e-01, 1.469446773488e-05, 9.1250e-01, 1.3151e-02, + 2DIAGNOSTIC, 38, -6.019758225466e-01, 1.232572070802e-05, 9.2515e-01, 1.2647e-02, + 2DIAGNOSTIC, 39, -6.020982409458e-01, 1.055251688338e-05, 9.3937e-01, 1.4223e-02, + 2DIAGNOSTIC, 40, -6.021308523590e-01, 1.082856147583e-05, 9.5678e-01, 1.7410e-02, + 2DIAGNOSTIC, 41, -6.021605515990e-01, 1.136014133108e-05, 9.7157e-01, 1.4792e-02, + 2DIAGNOSTIC, 42, -6.021788248615e-01, 1.136356202531e-05, 9.8366e-01, 1.2091e-02, + 2DIAGNOSTIC, 43, -6.022266449982e-01, 1.115528672885e-05, 9.9899e-01, 1.5327e-02, + 2DIAGNOSTIC, 44, -6.022373072859e-01, 1.025264504577e-05, 1.0132e+00, 1.4226e-02, + 2DIAGNOSTIC, 45, -6.022455740039e-01, 9.428739936007e-06, 1.0267e+00, 1.3512e-02, + 2DIAGNOSTIC, 46, -6.022540893468e-01, 7.999934644370e-06, 1.0418e+00, 1.5113e-02, + 2DIAGNOSTIC, 47, -6.022584630955e-01, 6.143841059961e-06, 1.0538e+00, 1.1916e-02, + 2DIAGNOSTIC, 48, -6.022708214958e-01, 4.434836657321e-06, 1.0657e+00, 1.1945e-02, + 2DIAGNOSTIC, 49, -6.022811425627e-01, 3.707680443044e-06, 1.0797e+00, 1.3994e-02, + 2DIAGNOSTIC, 50, -6.022902710809e-01, 3.110147470547e-06, 1.0920e+00, 1.2332e-02, + 2DIAGNOSTIC, 51, -6.023361571776e-01, 3.000807368890e-06, 1.1089e+00, 1.6919e-02, + 2DIAGNOSTIC, 52, -6.023495716910e-01, 2.935085613293e-06, 1.1211e+00, 1.2147e-02, + 2DIAGNOSTIC, 53, -6.023635663934e-01, 3.200422801868e-06, 1.1332e+00, 1.2081e-02, + 2DIAGNOSTIC, 54, -6.024537861982e-01, 4.091438676745e-06, 1.1482e+00, 1.4998e-02, + 2DIAGNOSTIC, 55, -6.025094659442e-01, 5.141580505508e-06, 1.1669e+00, 1.8702e-02, + 2DIAGNOSTIC, 56, -6.025164085714e-01, 5.838430826157e-06, 1.1799e+00, 1.3067e-02, + 2DIAGNOSTIC, 57, -6.025382189880e-01, 6.233312748662e-06, 1.1929e+00, 1.3006e-02, + 2DIAGNOSTIC, 58, -6.025574727868e-01, 6.329285050309e-06, 1.2055e+00, 1.2573e-02, + 2DIAGNOSTIC, 59, -6.025807547405e-01, 6.123910287023e-06, 1.2214e+00, 1.5899e-02, + 2DIAGNOSTIC, 60, -6.025853175398e-01, 5.478048219949e-06, 1.2348e+00, 1.3360e-02, + 2DIAGNOSTIC, 61, -6.025903612367e-01, 4.782339493588e-06, 1.2467e+00, 1.1919e-02, + 2DIAGNOSTIC, 62, -6.026353452415e-01, 4.155239444022e-06, 1.2607e+00, 1.4018e-02, + 2DIAGNOSTIC, 63, -6.026771582427e-01, 3.590444678535e-06, 1.2809e+00, 2.0195e-02, + 2DIAGNOSTIC, 64, -6.026792070488e-01, 3.411481801215e-06, 1.2933e+00, 1.2396e-02, + 2DIAGNOSTIC, 65, -6.026836227685e-01, 3.404434465726e-06, 1.3057e+00, 1.2421e-02, + 2DIAGNOSTIC, 66, -6.026865678669e-01, 3.189817666661e-06, 1.3190e+00, 1.3224e-02, + 2DIAGNOSTIC, 67, -6.026887432633e-01, 2.882045754958e-06, 1.3317e+00, 1.2732e-02, + 2DIAGNOSTIC, 68, -6.026922808592e-01, 2.500348643264e-06, 1.3440e+00, 1.2325e-02, + 2DIAGNOSTIC, 69, -6.026963635333e-01, 2.124267138371e-06, 1.3568e+00, 1.2782e-02, + 2DIAGNOSTIC, 70, -6.027006370801e-01, 1.664740244945e-06, 1.3694e+00, 1.2654e-02, + 2DIAGNOSTIC, 71, -6.027357356615e-01, 1.363123990201e-06, 1.3908e+00, 2.1382e-02, + 2DIAGNOSTIC, 72, -6.027368761768e-01, 1.271004283007e-06, 1.4134e+00, 2.2545e-02, + 2DIAGNOSTIC, 73, -6.027368785552e-01, 1.374895409620e-06, 1.4238e+00, 1.0462e-02, + 2DIAGNOSTIC, 74, -6.027368768414e-01, 1.401271920418e-06, 1.4355e+00, 1.1656e-02, + 2DIAGNOSTIC, 75, -6.027368772130e-01, 1.359833248641e-06, 1.4741e+00, 3.8622e-02, + 2DIAGNOSTIC, 76, -6.027368772130e-01, 1.244047371641e-06, 1.4955e+00, 2.1395e-02, + 2DIAGNOSTIC, 77, -6.027368772130e-01, 1.064189505835e-06, 1.5091e+00, 1.3559e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.067011212508e-01, 1.797693134862e+308, 1.6929e+00, 1.8379e-01, + Elapsed time (stage 1): 1.7192e+00 + + +Total elapsed time: 3.1596e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:38:48 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 31 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 66 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 85.46% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 85.46% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[26448 5094 851 1130 449 0 14540 391 6586 5591 494 536 + 214 0 1361 0 0 0 0 0 0 354 0 0 + 0 0 0 0 0 0 0] +[117108 150393 14434 13562 3171 1729 5600 7447 3489 6942 + 920 986 906 1025 0 893 214 581 794 557 + 1182 0 430 287 0 0 222 417 0 0 + 0] +[ 2727 17020 8149 0 7632 0 0 298 0 457 0 0 + 0 2216 283 672 0 0 0 0 1743 0 0 5525 + 1175 29979 9041 0 3214 0 0] +[ 213 102311 216 1052 248 0 469 2680 936 11584 + 875 574 0 0 6321 0 0 262 629 319 + 0 0 0 3082 205 159083 354 1769 5641 237 + 758] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:48:37 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:48:43 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:31 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:31 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:31 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:42 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:45 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC003 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:57 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999998569488525 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:53:24 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:55:27 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:55:28 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:56:45 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:56:46 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x562247fd1d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [81.9449, 115.949, -129.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562247e48730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f245802a010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x562247fd5020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.051, 56.773, -120.373] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562247fdb0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f245496b010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x562247feb840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [81.9449, 115.949, -129.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562247fd7890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f244f563010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x562247fef3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.051, 56.773, -120.373] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562247fde130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f244bea4010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.773163155830e-01, 1.797693134862e+308, 2.4935e-01, 2.4935e-01, + 2DIAGNOSTIC, 2, -4.789385348667e-01, 1.797693134862e+308, 2.5056e-01, 1.2069e-03, + 2DIAGNOSTIC, 3, -4.807141504808e-01, 1.797693134862e+308, 2.5175e-01, 1.1890e-03, + 2DIAGNOSTIC, 4, -4.843593028875e-01, 1.797693134862e+308, 2.5301e-01, 1.2610e-03, + 2DIAGNOSTIC, 5, -4.880118058983e-01, 1.797693134862e+308, 2.5441e-01, 1.4060e-03, + 2DIAGNOSTIC, 6, -4.921879279379e-01, 1.797693134862e+308, 2.5609e-01, 1.6780e-03, + 2DIAGNOSTIC, 7, -4.921447485091e-01, 1.797693134862e+308, 2.5753e-01, 1.4429e-03, + 2DIAGNOSTIC, 8, -4.919912412242e-01, 1.797693134862e+308, 2.5883e-01, 1.2970e-03, + 2DIAGNOSTIC, 9, -4.918958305920e-01, 1.797693134862e+308, 2.6041e-01, 1.5740e-03, + 2DIAGNOSTIC, 10, -4.917542327575e-01, 2.221164808787e-03, 2.6208e-01, 1.6768e-03, + 2DIAGNOSTIC, 11, -4.916617008134e-01, 1.567361188852e-03, 2.6367e-01, 1.5841e-03, + 2DIAGNOSTIC, 12, -4.918240282220e-01, 9.716921753590e-04, 2.6521e-01, 1.5430e-03, + 2DIAGNOSTIC, 13, -4.922774051200e-01, 4.808690403452e-04, 2.6672e-01, 1.5140e-03, + 2DIAGNOSTIC, 14, -4.925413890320e-01, 1.770840330376e-04, 2.6846e-01, 1.7402e-03, + 2DIAGNOSTIC, 15, -4.925396997411e-01, 3.510781473844e-05, 2.7060e-01, 2.1360e-03, + 2DIAGNOSTIC, 16, -4.923849078253e-01, 5.445117068280e-05, 2.7277e-01, 2.1660e-03, + 2DIAGNOSTIC, 17, -4.925305944694e-01, 7.036927393843e-05, 2.7487e-01, 2.1071e-03, + 2DIAGNOSTIC, 18, -4.914695496878e-01, 3.848729827176e-05, 2.7674e-01, 1.8680e-03, + 2DIAGNOSTIC, 19, -4.983555249183e-01, 2.148593144777e-04, 2.7916e-01, 2.4209e-03, + 2DIAGNOSTIC, 20, -5.074460036660e-01, 6.067018426185e-04, 2.8169e-01, 2.5258e-03, + 2DIAGNOSTIC, 21, -5.106644834151e-01, 9.843582655533e-04, 2.8396e-01, 2.2709e-03, + 2DIAGNOSTIC, 22, -5.103466261275e-01, 1.233965748667e-03, 2.8554e-01, 1.5829e-03, + 2DIAGNOSTIC, 23, -5.116771475760e-01, 1.394954376875e-03, 2.8723e-01, 1.6880e-03, + 2DIAGNOSTIC, 24, -5.118439206450e-01, 1.418685885017e-03, 2.8873e-01, 1.4958e-03, + 2DIAGNOSTIC, 25, -5.106060935003e-01, 1.274690337449e-03, 2.9048e-01, 1.7500e-03, + 2DIAGNOSTIC, 26, -5.106618501510e-01, 1.021788689844e-03, 2.9198e-01, 1.5080e-03, + 2DIAGNOSTIC, 27, -5.107237329569e-01, 7.015799028739e-04, 2.9345e-01, 1.4670e-03, + 2DIAGNOSTIC, 28, -5.118496454893e-01, 3.386054993662e-04, 2.9558e-01, 2.1300e-03, + 2DIAGNOSTIC, 29, -5.105642137177e-01, 7.488411471123e-05, 2.9731e-01, 1.7250e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.877260522987e-01, 1.797693134862e+308, 5.4935e-01, 2.5204e-01, + 2DIAGNOSTIC, 2, -3.883300346106e-01, 1.797693134862e+308, 5.5143e-01, 2.0859e-03, + 2DIAGNOSTIC, 3, -3.890133707052e-01, 1.797693134862e+308, 5.5351e-01, 2.0730e-03, + 2DIAGNOSTIC, 4, -3.900797848050e-01, 1.797693134862e+308, 5.5564e-01, 2.1310e-03, + 2DIAGNOSTIC, 5, -3.937412121695e-01, 1.797693134862e+308, 5.5787e-01, 2.2349e-03, + 2DIAGNOSTIC, 6, -3.977663519451e-01, 1.797693134862e+308, 5.6056e-01, 2.6901e-03, + 2DIAGNOSTIC, 7, -4.039337653998e-01, 1.797693134862e+308, 5.6328e-01, 2.7170e-03, + 2DIAGNOSTIC, 8, -4.091425091627e-01, 1.797693134862e+308, 5.6678e-01, 3.5000e-03, + 2DIAGNOSTIC, 9, -4.109624173524e-01, 1.797693134862e+308, 5.6919e-01, 2.4059e-03, + 2DIAGNOSTIC, 10, -4.112737896742e-01, 4.612910889357e-03, 5.7153e-01, 2.3439e-03, + 2DIAGNOSTIC, 11, -4.107075453289e-01, 4.188775235065e-03, 5.7382e-01, 2.2950e-03, + 2DIAGNOSTIC, 12, -4.114636412073e-01, 3.540516949233e-03, 5.7681e-01, 2.9829e-03, + 2DIAGNOSTIC, 13, -4.120959560680e-01, 2.743770160573e-03, 5.7915e-01, 2.3482e-03, + 2DIAGNOSTIC, 14, -4.126680246188e-01, 1.896445407693e-03, 5.8178e-01, 2.6219e-03, + 2DIAGNOSTIC, 15, -4.134785790322e-01, 1.204228933711e-03, 5.8607e-01, 4.2970e-03, + 2DIAGNOSTIC, 16, -4.136359940302e-01, 6.710118018737e-04, 5.8846e-01, 2.3820e-03, + 2DIAGNOSTIC, 17, -4.138258901005e-01, 3.985162125310e-04, 5.9110e-01, 2.6422e-03, + 2DIAGNOSTIC, 18, -4.141390670952e-01, 3.333626451766e-04, 5.9385e-01, 2.7521e-03, + 2DIAGNOSTIC, 19, -4.142220489821e-01, 3.139482800401e-04, 5.9643e-01, 2.5759e-03, + 2DIAGNOSTIC, 20, -4.142434953541e-01, 2.800256901677e-04, 5.9870e-01, 2.2750e-03, + 2DIAGNOSTIC, 21, -4.143702652824e-01, 2.086498365848e-04, 6.0145e-01, 2.7480e-03, + 2DIAGNOSTIC, 22, -4.145160023857e-01, 1.530750030964e-04, 6.0386e-01, 2.4111e-03, + 2DIAGNOSTIC, 23, -4.146538018236e-01, 1.112606946963e-04, 6.0645e-01, 2.5940e-03, + 2DIAGNOSTIC, 24, -4.147532329387e-01, 8.162642822152e-05, 6.0876e-01, 2.3041e-03, + 2DIAGNOSTIC, 25, -4.148704701740e-01, 7.284223434175e-05, 6.1110e-01, 2.3451e-03, + 2DIAGNOSTIC, 26, -4.153126338184e-01, 7.401263210710e-05, 6.1346e-01, 2.3541e-03, + 2DIAGNOSTIC, 27, -4.150847180755e-01, 6.673215232866e-05, 6.1583e-01, 2.3720e-03, + 2DIAGNOSTIC, 28, -4.182672073311e-01, 1.409327432932e-04, 6.1975e-01, 3.9251e-03, + 2DIAGNOSTIC, 29, -4.185206723738e-01, 2.027102200902e-04, 6.2205e-01, 2.3000e-03, + 2DIAGNOSTIC, 30, -4.188746550056e-01, 2.504645798716e-04, 6.2452e-01, 2.4691e-03, + 2DIAGNOSTIC, 31, -4.194660564061e-01, 2.883737950128e-04, 6.2683e-01, 2.3050e-03, + 2DIAGNOSTIC, 32, -4.213706788622e-01, 3.406324404392e-04, 6.3047e-01, 3.6430e-03, + 2DIAGNOSTIC, 33, -4.217210514126e-01, 3.658127999322e-04, 6.3278e-01, 2.3081e-03, + 2DIAGNOSTIC, 34, -4.219756218059e-01, 3.621325629834e-04, 6.3543e-01, 2.6479e-03, + 2DIAGNOSTIC, 35, -4.223337204630e-01, 3.348575841570e-04, 6.3804e-01, 2.6088e-03, + 2DIAGNOSTIC, 36, -4.225348192283e-01, 2.903150950975e-04, 6.4040e-01, 2.3589e-03, + 2DIAGNOSTIC, 37, -4.233193650140e-01, 2.289473799972e-04, 6.4301e-01, 2.6190e-03, + 2DIAGNOSTIC, 38, -4.239810784170e-01, 2.186165259643e-04, 6.4531e-01, 2.2998e-03, + 2DIAGNOSTIC, 39, -4.254164149814e-01, 2.181988364355e-04, 6.4796e-01, 2.6469e-03, + 2DIAGNOSTIC, 40, -4.273574700855e-01, 2.363130580311e-04, 6.5029e-01, 2.3270e-03, + 2DIAGNOSTIC, 41, -4.286625399480e-01, 2.615117030944e-04, 6.5329e-01, 2.9972e-03, + 2DIAGNOSTIC, 42, -4.295496895574e-01, 3.061539288610e-04, 6.5629e-01, 3.0060e-03, + 2DIAGNOSTIC, 43, -4.308232800626e-01, 3.454560497993e-04, 6.5904e-01, 2.7440e-03, + 2DIAGNOSTIC, 44, -4.447975249808e-01, 5.709513858564e-04, 6.6169e-01, 2.6531e-03, + 2DIAGNOSTIC, 45, -4.460587099638e-01, 7.497870628000e-04, 6.6403e-01, 2.3410e-03, + 2DIAGNOSTIC, 46, -4.472052082336e-01, 8.706143259849e-04, 6.6633e-01, 2.3010e-03, + 2DIAGNOSTIC, 47, -4.485980394306e-01, 9.374514329746e-04, 6.6994e-01, 3.6130e-03, + 2DIAGNOSTIC, 48, -4.491588174762e-01, 9.279173399346e-04, 6.7226e-01, 2.3179e-03, + 2DIAGNOSTIC, 49, -4.501272517025e-01, 8.599337808891e-04, 6.7456e-01, 2.2991e-03, + 2DIAGNOSTIC, 50, -4.511100626018e-01, 7.511927754064e-04, 6.7715e-01, 2.5880e-03, + 2DIAGNOSTIC, 51, -4.515773292768e-01, 6.011365830110e-04, 6.7940e-01, 2.2528e-03, + 2DIAGNOSTIC, 52, -4.517247995390e-01, 4.150177898789e-04, 6.8167e-01, 2.2650e-03, + 2DIAGNOSTIC, 53, -4.526787073814e-01, 2.204467957698e-04, 6.8427e-01, 2.6040e-03, + 2DIAGNOSTIC, 54, -4.545976873433e-01, 2.107108361636e-04, 6.8779e-01, 3.5200e-03, + 2DIAGNOSTIC, 55, -4.551479683570e-01, 2.025474474204e-04, 6.9007e-01, 2.2810e-03, + 2DIAGNOSTIC, 56, -4.553622039245e-01, 1.915997176771e-04, 6.9234e-01, 2.2721e-03, + 2DIAGNOSTIC, 57, -4.558034417396e-01, 1.847785595671e-04, 6.9465e-01, 2.3060e-03, + 2DIAGNOSTIC, 58, -4.562964414164e-01, 1.723355838903e-04, 6.9728e-01, 2.6340e-03, + 2DIAGNOSTIC, 59, -4.566917717750e-01, 1.586234360387e-04, 6.9959e-01, 2.3091e-03, + 2DIAGNOSTIC, 60, -4.579405250794e-01, 1.549815487838e-04, 7.0195e-01, 2.3551e-03, + 2DIAGNOSTIC, 61, -4.639155843402e-01, 2.072759214852e-04, 7.0436e-01, 2.4099e-03, + 2DIAGNOSTIC, 62, -4.679537758868e-01, 2.812138644197e-04, 7.0709e-01, 2.7351e-03, + 2DIAGNOSTIC, 63, -4.719524320190e-01, 3.770784894775e-04, 7.0980e-01, 2.7120e-03, + 2DIAGNOSTIC, 64, -4.714740773419e-01, 4.485476674561e-04, 7.1249e-01, 2.6851e-03, + 2DIAGNOSTIC, 65, -4.751612401352e-01, 5.186500027683e-04, 7.1517e-01, 2.6779e-03, + 2DIAGNOSTIC, 66, -4.874058870303e-01, 6.597214394262e-04, 7.1787e-01, 2.7070e-03, + 2DIAGNOSTIC, 67, -4.864470270253e-01, 7.235193845593e-04, 7.2024e-01, 2.3701e-03, + 2DIAGNOSTIC, 68, -5.041974341823e-01, 8.946289608107e-04, 7.2379e-01, 3.5441e-03, + 2DIAGNOSTIC, 69, -5.148172019672e-01, 1.076339368503e-03, 7.2688e-01, 3.0930e-03, + 2DIAGNOSTIC, 70, -5.155157504920e-01, 1.164130947797e-03, 7.3107e-01, 4.1881e-03, + 2DIAGNOSTIC, 71, -5.195862533586e-01, 1.230425126341e-03, 7.3473e-01, 3.6600e-03, + 2DIAGNOSTIC, 72, -5.228312442156e-01, 1.241229302571e-03, 7.3812e-01, 3.3948e-03, + 2DIAGNOSTIC, 73, -5.226918178396e-01, 1.165716176695e-03, 7.4053e-01, 2.4080e-03, + 2DIAGNOSTIC, 74, -5.253103886399e-01, 9.981921244139e-04, 7.4322e-01, 2.6829e-03, + 2DIAGNOSTIC, 75, -5.265375454146e-01, 7.809226136707e-04, 7.4550e-01, 2.2850e-03, + 2DIAGNOSTIC, 76, -5.268217310213e-01, 6.044743066897e-04, 7.4901e-01, 3.5081e-03, + 2DIAGNOSTIC, 77, -5.271939718887e-01, 3.671654635075e-04, 7.5236e-01, 3.3541e-03, + 2DIAGNOSTIC, 78, -5.287122188421e-01, 2.584113172576e-04, 7.5541e-01, 3.0499e-03, + 2DIAGNOSTIC, 79, -5.375050853601e-01, 2.853654134033e-04, 7.5842e-01, 3.0038e-03, + 2DIAGNOSTIC, 80, -5.396871892525e-01, 3.043305752792e-04, 7.6162e-01, 3.2051e-03, + 2DIAGNOSTIC, 81, -5.406314953626e-01, 3.329109982823e-04, 7.6447e-01, 2.8501e-03, + 2DIAGNOSTIC, 82, -5.421783636954e-01, 3.671456683855e-04, 7.6708e-01, 2.6040e-03, + 2DIAGNOSTIC, 83, -5.455942051518e-01, 3.891468741734e-04, 7.7004e-01, 2.9609e-03, + 2DIAGNOSTIC, 84, -5.547184462250e-01, 4.593637884014e-04, 7.7317e-01, 3.1290e-03, + 2DIAGNOSTIC, 85, -5.951634149138e-01, 7.894774088523e-04, 7.7653e-01, 3.3660e-03, + 2DIAGNOSTIC, 86, -6.434246845827e-01, 1.379363636285e-03, 7.7968e-01, 3.1500e-03, + 2DIAGNOSTIC, 87, -6.900342561484e-01, 2.146505215491e-03, 7.8196e-01, 2.2800e-03, + 2DIAGNOSTIC, 88, -6.986401182373e-01, 2.748916872455e-03, 7.8519e-01, 3.2239e-03, + 2DIAGNOSTIC, 89, -7.041290420313e-01, 3.170109490703e-03, 7.8745e-01, 2.2621e-03, + 2DIAGNOSTIC, 90, -7.069449056698e-01, 3.305061056264e-03, 7.8981e-01, 2.3670e-03, + 2DIAGNOSTIC, 91, -7.122697533508e-01, 3.153341216824e-03, 7.9222e-01, 2.4059e-03, + 2DIAGNOSTIC, 92, -7.273140997762e-01, 2.808984872917e-03, 7.9601e-01, 3.7882e-03, + 2DIAGNOSTIC, 93, -7.324222859451e-01, 2.262913659148e-03, 7.9863e-01, 2.6259e-03, + 2DIAGNOSTIC, 94, -7.377114861977e-01, 1.609496896523e-03, 8.0118e-01, 2.5470e-03, + 2DIAGNOSTIC, 95, -7.385109291166e-01, 1.076332740830e-03, 8.0374e-01, 2.5542e-03, + 2DIAGNOSTIC, 96, -7.397770853016e-01, 7.539564592852e-04, 8.0724e-01, 3.5090e-03, + 2DIAGNOSTIC, 97, -7.395191504086e-01, 6.475039965688e-04, 8.0946e-01, 2.2120e-03, + 2DIAGNOSTIC, 98, -7.439231173707e-01, 5.585366981580e-04, 8.1171e-01, 2.2490e-03, + 2DIAGNOSTIC, 99, -7.462896821971e-01, 4.646673226065e-04, 8.1421e-01, 2.5041e-03, + 2DIAGNOSTIC, 100, -7.478170505894e-01, 3.543285153356e-04, 8.1651e-01, 2.2969e-03, + 2DIAGNOSTIC, 101, -7.483060651197e-01, 2.448563192890e-04, 8.1922e-01, 2.7120e-03, + 2DIAGNOSTIC, 102, -7.493897914610e-01, 2.052345882297e-04, 8.2159e-01, 2.3720e-03, + 2DIAGNOSTIC, 103, -7.504519447493e-01, 1.799882139079e-04, 8.2431e-01, 2.7189e-03, + 2DIAGNOSTIC, 104, -7.514308551427e-01, 1.718321847218e-04, 8.2721e-01, 2.9011e-03, + 2DIAGNOSTIC, 105, -7.537339451489e-01, 1.640193605312e-04, 8.2963e-01, 2.4209e-03, + 2DIAGNOSTIC, 106, -7.548493516967e-01, 1.534852425311e-04, 8.3200e-01, 2.3670e-03, + 2DIAGNOSTIC, 107, -7.578965943820e-01, 1.425842333156e-04, 8.3502e-01, 3.0200e-03, + 2DIAGNOSTIC, 108, -7.594062477696e-01, 1.481690517909e-04, 8.3861e-01, 3.5889e-03, + 2DIAGNOSTIC, 109, -7.603383381919e-01, 1.559001131946e-04, 8.4088e-01, 2.2759e-03, + 2DIAGNOSTIC, 110, -7.603270138806e-01, 1.560681774558e-04, 8.4317e-01, 2.2869e-03, + 2DIAGNOSTIC, 111, -7.606904900784e-01, 1.453960423186e-04, 8.4576e-01, 2.5899e-03, + 2DIAGNOSTIC, 112, -7.608669012300e-01, 1.269693510463e-04, 8.4864e-01, 2.8780e-03, + 2DIAGNOSTIC, 113, -7.610021216102e-01, 1.024507848090e-04, 8.5121e-01, 2.5680e-03, + 2DIAGNOSTIC, 114, -7.613891330368e-01, 7.509946096860e-05, 8.5379e-01, 2.5871e-03, + 2DIAGNOSTIC, 115, -7.610812964430e-01, 5.067250572995e-05, 8.5608e-01, 2.2900e-03, + 2DIAGNOSTIC, 116, -7.610191047390e-01, 2.666902640228e-05, 8.5834e-01, 2.2550e-03, + 2DIAGNOSTIC, 117, -7.612534222604e-01, 1.559133060567e-05, 8.6063e-01, 2.2900e-03, + 2DIAGNOSTIC, 118, -7.615220090381e-01, 1.118555986695e-05, 8.6306e-01, 2.4331e-03, + 2DIAGNOSTIC, 119, -7.616015129486e-01, 1.034384627274e-05, 8.6614e-01, 3.0830e-03, + 2DIAGNOSTIC, 120, -7.616839315132e-01, 8.884738723888e-06, 8.6986e-01, 3.7131e-03, + 2DIAGNOSTIC, 121, -7.617096184193e-01, 8.367137827462e-06, 8.7220e-01, 2.3429e-03, + 2DIAGNOSTIC, 122, -7.616333774912e-01, 7.488714534511e-06, 8.7457e-01, 2.3739e-03, + 2DIAGNOSTIC, 123, -7.616583384232e-01, 6.549426187805e-06, 8.7698e-01, 2.4021e-03, + 2DIAGNOSTIC, 124, -7.618746561309e-01, 7.610912184930e-06, 8.7968e-01, 2.7020e-03, + 2DIAGNOSTIC, 125, -7.619192591945e-01, 6.850062808535e-06, 8.8208e-01, 2.4040e-03, + 2DIAGNOSTIC, 126, -7.618214160784e-01, 4.814203985487e-06, 8.8448e-01, 2.4011e-03, + 2DIAGNOSTIC, 127, -7.620426381627e-01, 4.259314238959e-06, 8.8823e-01, 3.7491e-03, + 2DIAGNOSTIC, 128, -7.619441201612e-01, 3.989399161602e-06, 8.9061e-01, 2.3820e-03, + 2DIAGNOSTIC, 129, -7.621266474935e-01, 4.404978045373e-06, 8.9302e-01, 2.4092e-03, + 2DIAGNOSTIC, 130, -7.621718805711e-01, 4.901723470868e-06, 8.9572e-01, 2.6910e-03, + 2DIAGNOSTIC, 131, -7.621993979145e-01, 5.177403640770e-06, 8.9803e-01, 2.3189e-03, + 2DIAGNOSTIC, 132, -7.623665414987e-01, 5.339051263386e-06, 9.0113e-01, 3.0971e-03, + 2DIAGNOSTIC, 133, -7.624870738442e-01, 5.527777958061e-06, 9.0506e-01, 3.9279e-03, + 2DIAGNOSTIC, 134, -7.626311472715e-01, 6.564009772078e-06, 9.0756e-01, 2.4960e-03, + 2DIAGNOSTIC, 135, -7.626390979196e-01, 7.181058958044e-06, 9.1008e-01, 2.5210e-03, + 2DIAGNOSTIC, 136, -7.626631488955e-01, 6.838697518793e-06, 9.1287e-01, 2.7890e-03, + 2DIAGNOSTIC, 137, -7.627665773376e-01, 7.080116470113e-06, 9.1657e-01, 3.7079e-03, + 2DIAGNOSTIC, 138, -7.631027254692e-01, 7.490031769648e-06, 9.2098e-01, 4.4060e-03, + 2DIAGNOSTIC, 139, -7.628264127035e-01, 6.825643888705e-06, 9.2333e-01, 2.3460e-03, + 2DIAGNOSTIC, 140, -7.628318727285e-01, 5.780895408054e-06, 9.2642e-01, 3.0930e-03, + 2DIAGNOSTIC, 141, -7.628426294931e-01, 4.361413951456e-06, 9.2996e-01, 3.5410e-03, + 2DIAGNOSTIC, 142, -7.627245476375e-01, 2.714123386665e-06, 9.3286e-01, 2.9051e-03, + 2DIAGNOSTIC, 143, -7.630579507777e-01, 2.421303864108e-06, 9.3631e-01, 3.4499e-03, + 2DIAGNOSTIC, 144, -7.628696747224e-01, 1.756541564930e-06, 9.3894e-01, 2.6290e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.230341864342e-01, 1.797693134862e+308, 1.2155e+00, 2.7659e-01, + 2DIAGNOSTIC, 2, -6.233269766004e-01, 1.797693134862e+308, 1.2281e+00, 1.2552e-02, + 2DIAGNOSTIC, 3, -6.234689447863e-01, 1.797693134862e+308, 1.2406e+00, 1.2466e-02, + 2DIAGNOSTIC, 4, -6.236494138504e-01, 1.797693134862e+308, 1.2530e+00, 1.2483e-02, + 2DIAGNOSTIC, 5, -6.237608787939e-01, 1.797693134862e+308, 1.2713e+00, 1.8225e-02, + 2DIAGNOSTIC, 6, -6.238154536400e-01, 1.797693134862e+308, 1.2848e+00, 1.3521e-02, + 2DIAGNOSTIC, 7, -6.237877332546e-01, 1.797693134862e+308, 1.2983e+00, 1.3556e-02, + 2DIAGNOSTIC, 8, -6.238367113397e-01, 1.797693134862e+308, 1.3122e+00, 1.3873e-02, + 2DIAGNOSTIC, 9, -6.238152838336e-01, 1.797693134862e+308, 1.3241e+00, 1.1901e-02, + 2DIAGNOSTIC, 10, -6.238082048220e-01, 7.301936415856e-05, 1.3378e+00, 1.3701e-02, + 2DIAGNOSTIC, 11, -6.238056965971e-01, 4.110555733536e-05, 1.3514e+00, 1.3573e-02, + 2DIAGNOSTIC, 12, -6.238029987776e-01, 2.208855189338e-05, 1.3689e+00, 1.7547e-02, + 2DIAGNOSTIC, 13, -6.238177636328e-01, 9.609042703765e-06, 1.3842e+00, 1.5257e-02, + 2DIAGNOSTIC, 14, -6.238055645027e-01, 3.632575111365e-06, 1.3986e+00, 1.4382e-02, + 2DIAGNOSTIC, 15, -6.237927216726e-01, 1.312660437944e-06, 1.4114e+00, 1.2863e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.335540735263e-01, 1.797693134862e+308, 1.9439e+00, 5.3250e-01, + 2DIAGNOSTIC, 2, -5.337525783842e-01, 1.797693134862e+308, 2.0422e+00, 9.8279e-02, + 2DIAGNOSTIC, 3, -5.338690779530e-01, 1.797693134862e+308, 2.1354e+00, 9.3188e-02, + 2DIAGNOSTIC, 4, -5.340233925067e-01, 1.797693134862e+308, 2.2342e+00, 9.8848e-02, + 2DIAGNOSTIC, 5, -5.342307206642e-01, 1.797693134862e+308, 2.3888e+00, 1.5457e-01, + 2DIAGNOSTIC, 6, -5.342961933843e-01, 1.797693134862e+308, 2.4984e+00, 1.0962e-01, + 2DIAGNOSTIC, 7, -5.342956367734e-01, 1.797693134862e+308, 2.6069e+00, 1.0843e-01, + 2DIAGNOSTIC, 8, -5.342938305545e-01, 1.797693134862e+308, 2.7130e+00, 1.0612e-01, + 2DIAGNOSTIC, 9, -5.342955433020e-01, 1.797693134862e+308, 2.8153e+00, 1.0233e-01, + 2DIAGNOSTIC, 10, -5.342959630843e-01, 9.111003183210e-05, 2.9366e+00, 1.2130e-01, + 2DIAGNOSTIC, 11, -5.342963038137e-01, 5.789971913786e-05, 3.0274e+00, 9.0741e-02, + 2DIAGNOSTIC, 12, -5.343015362378e-01, 3.440347103013e-05, 3.1372e+00, 1.0986e-01, + 2DIAGNOSTIC, 13, -5.343074516000e-01, 1.662700967923e-05, 3.2470e+00, 1.0976e-01, + 2DIAGNOSTIC, 14, -5.343181719312e-01, 6.174096340836e-06, 3.3571e+00, 1.1011e-01, + 2DIAGNOSTIC, 15, -5.343252819355e-01, 4.291760517569e-06, 3.4694e+00, 1.1235e-01, + 2DIAGNOSTIC, 16, -5.343302229046e-01, 4.787816823393e-06, 3.5770e+00, 1.0753e-01, + 2DIAGNOSTIC, 17, -5.343312732972e-01, 4.985969838701e-06, 3.6834e+00, 1.0649e-01, + 2DIAGNOSTIC, 18, -5.343443800858e-01, 5.206831928763e-06, 3.7729e+00, 8.9444e-02, + 2DIAGNOSTIC, 19, -5.343586731031e-01, 5.521756751441e-06, 3.8688e+00, 9.5907e-02, + 2DIAGNOSTIC, 20, -5.343804856122e-01, 6.032070951630e-06, 3.9511e+00, 8.2352e-02, + 2DIAGNOSTIC, 21, -5.344646641431e-01, 8.214618633609e-06, 4.0428e+00, 9.1688e-02, + 2DIAGNOSTIC, 22, -5.345498622368e-01, 1.171328882432e-05, 4.1503e+00, 1.0751e-01, + 2DIAGNOSTIC, 23, -5.346365763470e-01, 1.605488330955e-05, 4.3012e+00, 1.5082e-01, + 2DIAGNOSTIC, 24, -5.346542872659e-01, 1.927645890064e-05, 4.4716e+00, 1.7042e-01, + 2DIAGNOSTIC, 25, -5.346490132260e-01, 2.062075848552e-05, 4.5953e+00, 1.2369e-01, + 2DIAGNOSTIC, 26, -5.346494874688e-01, 2.015918402538e-05, 4.7016e+00, 1.0631e-01, + 2DIAGNOSTIC, 27, -5.346499452407e-01, 1.794423584027e-05, 4.7929e+00, 9.1352e-02, + 2DIAGNOSTIC, 28, -5.346492738439e-01, 1.452890863059e-05, 4.8847e+00, 9.1763e-02, + 2DIAGNOSTIC, 29, -5.346518695829e-01, 1.041638767884e-05, 4.9884e+00, 1.0374e-01, + 2DIAGNOSTIC, 30, -5.346525864923e-01, 6.096024756513e-06, 5.0795e+00, 9.1034e-02, + 2DIAGNOSTIC, 31, -5.346523396514e-01, 2.999114826437e-06, 5.1706e+00, 9.1087e-02, + 2DIAGNOSTIC, 32, -5.346569486052e-01, 1.363256126700e-06, 5.2622e+00, 9.1662e-02, + 2DIAGNOSTIC, 33, -5.346566426339e-01, 1.173178777215e-06, 5.3607e+00, 9.8506e-02, + 2DIAGNOSTIC, 34, -5.346602980707e-01, 1.311520755755e-06, 5.4733e+00, 1.1254e-01, + 2DIAGNOSTIC, 35, -5.346699809366e-01, 1.472154947921e-06, 5.5851e+00, 1.1182e-01, + 2DIAGNOSTIC, 36, -5.346725243663e-01, 1.611478062092e-06, 5.7099e+00, 1.2478e-01, + 2DIAGNOSTIC, 37, -5.346758075021e-01, 1.729099858253e-06, 5.8188e+00, 1.0894e-01, + 2DIAGNOSTIC, 38, -5.346735521569e-01, 1.716793919221e-06, 5.9437e+00, 1.2489e-01, + 2DIAGNOSTIC, 39, -5.346770668758e-01, 1.706004790065e-06, 6.0652e+00, 1.2146e-01, + 2DIAGNOSTIC, 40, -5.346759193904e-01, 1.602455147715e-06, 6.1688e+00, 1.0369e-01, + 2DIAGNOSTIC, 41, -5.346734042131e-01, 1.389459791345e-06, 6.2778e+00, 1.0896e-01, + 2DIAGNOSTIC, 42, -5.346750956789e-01, 1.211243184834e-06, 6.3730e+00, 9.5204e-02, + Elapsed time (stage 0): 6.5272e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.621449821719e-01, 1.797693134862e+308, 2.1932e-01, 2.1932e-01, + 2DIAGNOSTIC, 2, -8.646714394798e-01, 1.797693134862e+308, 2.2067e-01, 1.3499e-03, + 2DIAGNOSTIC, 3, -8.686811375945e-01, 1.797693134862e+308, 2.2194e-01, 1.2679e-03, + 2DIAGNOSTIC, 4, -8.735112043332e-01, 1.797693134862e+308, 2.2319e-01, 1.2541e-03, + 2DIAGNOSTIC, 5, -8.853440432567e-01, 1.797693134862e+308, 2.2449e-01, 1.3011e-03, + 2DIAGNOSTIC, 6, -9.005879105345e-01, 1.797693134862e+308, 2.2576e-01, 1.2720e-03, + 2DIAGNOSTIC, 7, -9.228017645161e-01, 1.797693134862e+308, 2.2738e-01, 1.6119e-03, + 2DIAGNOSTIC, 8, -9.459746776859e-01, 1.797693134862e+308, 2.2893e-01, 1.5569e-03, + 2DIAGNOSTIC, 9, -9.510152415280e-01, 1.797693134862e+308, 2.3075e-01, 1.8129e-03, + 2DIAGNOSTIC, 10, -9.609188469036e-01, 7.992690755022e-03, 2.3249e-01, 1.7412e-03, + 2DIAGNOSTIC, 11, -9.684213296097e-01, 7.693931357244e-03, 2.3401e-01, 1.5280e-03, + 2DIAGNOSTIC, 12, -9.829752891794e-01, 7.184630943166e-03, 2.3622e-01, 2.2070e-03, + 2DIAGNOSTIC, 13, -9.823134759887e-01, 6.184393224433e-03, 2.3797e-01, 1.7450e-03, + 2DIAGNOSTIC, 14, -9.823027393358e-01, 4.889712575416e-03, 2.3982e-01, 1.8501e-03, + 2DIAGNOSTIC, 15, -9.811398095012e-01, 3.555721618162e-03, 2.4136e-01, 1.5411e-03, + 2DIAGNOSTIC, 16, -9.814952338110e-01, 2.360755131436e-03, 2.4281e-01, 1.4539e-03, + 2DIAGNOSTIC, 17, -9.833049356400e-01, 1.513055551935e-03, 2.4467e-01, 1.8630e-03, + 2DIAGNOSTIC, 18, -9.868888783560e-01, 1.074953150179e-03, 2.4708e-01, 2.4030e-03, + 2DIAGNOSTIC, 19, -9.864661442395e-01, 6.591387964870e-04, 2.4908e-01, 2.0010e-03, + 2DIAGNOSTIC, 20, -9.864720268716e-01, 3.760336636071e-04, 2.5060e-01, 1.5190e-03, + 2DIAGNOSTIC, 21, -9.866807062575e-01, 1.912617761270e-04, 2.5209e-01, 1.4899e-03, + 2DIAGNOSTIC, 22, -9.870143713362e-01, 2.086438887992e-04, 2.5351e-01, 1.4241e-03, + 2DIAGNOSTIC, 23, -9.875351163981e-01, 2.022173877820e-04, 2.5503e-01, 1.5178e-03, + 2DIAGNOSTIC, 24, -9.882982212279e-01, 1.875923736380e-04, 2.5658e-01, 1.5512e-03, + 2DIAGNOSTIC, 25, -9.893253461080e-01, 1.558195025772e-04, 2.5815e-01, 1.5719e-03, + 2DIAGNOSTIC, 26, -9.899322557470e-01, 1.227377538307e-04, 2.6003e-01, 1.8799e-03, + 2DIAGNOSTIC, 27, -9.924011042140e-01, 1.267356191372e-04, 2.6205e-01, 2.0180e-03, + 2DIAGNOSTIC, 28, -9.937546411734e-01, 1.705581922170e-04, 2.6408e-01, 2.0339e-03, + 2DIAGNOSTIC, 29, -9.939033614620e-01, 1.923608960954e-04, 2.6587e-01, 1.7862e-03, + 2DIAGNOSTIC, 30, -9.944525114578e-01, 2.004384693196e-04, 2.6743e-01, 1.5621e-03, + 2DIAGNOSTIC, 31, -9.976928326356e-01, 2.219892023335e-04, 2.6907e-01, 1.6410e-03, + 2DIAGNOSTIC, 32, -9.999035515025e-01, 2.436027723746e-04, 2.7083e-01, 1.7600e-03, + 2DIAGNOSTIC, 33, -1.001165726582e+00, 2.563950232143e-04, 2.7219e-01, 1.3599e-03, + 2DIAGNOSTIC, 34, -1.008069604751e+00, 3.110825392610e-04, 2.7476e-01, 2.5680e-03, + 2DIAGNOSTIC, 35, -1.009527037094e+00, 3.528428434286e-04, 2.7610e-01, 1.3371e-03, + 2DIAGNOSTIC, 36, -1.009407740981e+00, 3.622928257038e-04, 2.7740e-01, 1.2999e-03, + 2DIAGNOSTIC, 37, -1.010344768353e+00, 3.642974418958e-04, 2.7874e-01, 1.3449e-03, + 2DIAGNOSTIC, 38, -1.011915236381e+00, 3.541462941288e-04, 2.8042e-01, 1.6789e-03, + 2DIAGNOSTIC, 39, -1.018642560737e+00, 3.617393390400e-04, 2.8218e-01, 1.7540e-03, + 2DIAGNOSTIC, 40, -1.020738159446e+00, 3.520316853136e-04, 2.8424e-01, 2.0680e-03, + 2DIAGNOSTIC, 41, -1.021730841394e+00, 3.402569538621e-04, 2.8575e-01, 1.5061e-03, + 2DIAGNOSTIC, 42, -1.021906501470e+00, 3.143668288100e-04, 2.8774e-01, 1.9932e-03, + 2DIAGNOSTIC, 43, -1.021535951602e+00, 2.645297853720e-04, 2.8919e-01, 1.4458e-03, + 2DIAGNOSTIC, 44, -1.021297335988e+00, 2.351653305208e-04, 2.9093e-01, 1.7431e-03, + 2DIAGNOSTIC, 45, -1.021918363504e+00, 1.980837012472e-04, 2.9289e-01, 1.9538e-03, + 2DIAGNOSTIC, 46, -1.022384012913e+00, 1.463241712199e-04, 2.9469e-01, 1.8001e-03, + 2DIAGNOSTIC, 47, -1.022106501402e+00, 8.735641176807e-05, 2.9645e-01, 1.7641e-03, + 2DIAGNOSTIC, 48, -1.022745132277e+00, 3.527865659263e-05, 2.9844e-01, 1.9851e-03, + 2DIAGNOSTIC, 49, -1.022671973534e+00, 2.113599409661e-05, 3.0025e-01, 1.8110e-03, + 2DIAGNOSTIC, 50, -1.024102655691e+00, 2.582381692825e-05, 3.0229e-01, 2.0399e-03, + 2DIAGNOSTIC, 51, -1.024202247999e+00, 3.380015403747e-05, 3.0397e-01, 1.6789e-03, + 2DIAGNOSTIC, 52, -1.024328841082e+00, 4.013522708127e-05, 3.0571e-01, 1.7490e-03, + 2DIAGNOSTIC, 53, -1.026697792505e+00, 5.350511499697e-05, 3.0747e-01, 1.7519e-03, + 2DIAGNOSTIC, 54, -1.027168612326e+00, 6.205689746992e-05, 3.0906e-01, 1.5900e-03, + 2DIAGNOSTIC, 55, -1.027263375901e+00, 6.807148073619e-05, 3.1058e-01, 1.5271e-03, + 2DIAGNOSTIC, 56, -1.027296207374e+00, 7.020040124417e-05, 3.1203e-01, 1.4429e-03, + 2DIAGNOSTIC, 57, -1.027324306200e+00, 6.430989736255e-05, 3.1393e-01, 1.9040e-03, + 2DIAGNOSTIC, 58, -1.027334394410e+00, 5.562780181848e-05, 3.1536e-01, 1.4260e-03, + 2DIAGNOSTIC, 59, -1.027345495460e+00, 4.139349353696e-05, 3.1704e-01, 1.6820e-03, + 2DIAGNOSTIC, 60, -1.027375977480e+00, 3.088901289136e-05, 3.1883e-01, 1.7939e-03, + 2DIAGNOSTIC, 61, -1.026672903398e+00, 1.513010204571e-05, 3.2022e-01, 1.3850e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.782568823018e-01, 1.797693134862e+308, 5.4057e-01, 2.2036e-01, + 2DIAGNOSTIC, 2, -8.800483707193e-01, 1.797693134862e+308, 5.4271e-01, 2.1369e-03, + 2DIAGNOSTIC, 3, -8.827507851336e-01, 1.797693134862e+308, 5.4491e-01, 2.1989e-03, + 2DIAGNOSTIC, 4, -8.854670081552e-01, 1.797693134862e+308, 5.4736e-01, 2.4529e-03, + 2DIAGNOSTIC, 5, -8.886275540964e-01, 1.797693134862e+308, 5.5025e-01, 2.8849e-03, + 2DIAGNOSTIC, 6, -8.897000858379e-01, 1.797693134862e+308, 5.5341e-01, 3.1581e-03, + 2DIAGNOSTIC, 7, -8.906583993065e-01, 1.797693134862e+308, 5.5642e-01, 3.0172e-03, + 2DIAGNOSTIC, 8, -8.923026735511e-01, 1.797693134862e+308, 5.5928e-01, 2.8560e-03, + 2DIAGNOSTIC, 9, -8.923540580460e-01, 1.797693134862e+308, 5.6188e-01, 2.6031e-03, + 2DIAGNOSTIC, 10, -8.922613742790e-01, 1.094297682774e-03, 5.6432e-01, 2.4340e-03, + 2DIAGNOSTIC, 11, -8.921830672610e-01, 7.932112026771e-04, 5.6702e-01, 2.6999e-03, + 2DIAGNOSTIC, 12, -8.922375735917e-01, 5.204650920679e-04, 5.6945e-01, 2.4319e-03, + 2DIAGNOSTIC, 13, -8.922999881883e-01, 3.097400495888e-04, 5.7188e-01, 2.4340e-03, + 2DIAGNOSTIC, 14, -8.923821422955e-01, 1.636384842921e-04, 5.7442e-01, 2.5330e-03, + 2DIAGNOSTIC, 15, -8.926788266329e-01, 9.623660662512e-05, 5.7714e-01, 2.7289e-03, + 2DIAGNOSTIC, 16, -8.930392029762e-01, 5.705259775034e-05, 5.7994e-01, 2.8000e-03, + 2DIAGNOSTIC, 17, -8.934764791330e-01, 4.263995027694e-05, 5.8251e-01, 2.5680e-03, + 2DIAGNOSTIC, 18, -8.943189400901e-01, 7.004415309741e-05, 5.8548e-01, 2.9631e-03, + 2DIAGNOSTIC, 19, -8.947879263824e-01, 9.674835977104e-05, 5.8947e-01, 3.9971e-03, + 2DIAGNOSTIC, 20, -8.951263979165e-01, 1.158756466559e-04, 5.9231e-01, 2.8350e-03, + 2DIAGNOSTIC, 21, -8.955251950909e-01, 1.274178385327e-04, 5.9476e-01, 2.4478e-03, + 2DIAGNOSTIC, 22, -8.955379440650e-01, 1.270192470839e-04, 5.9783e-01, 3.0758e-03, + 2DIAGNOSTIC, 23, -8.959690617691e-01, 1.217444760602e-04, 6.0773e-01, 9.8989e-03, + 2DIAGNOSTIC, 24, -8.959690282979e-01, 1.065234741313e-04, 6.1072e-01, 2.9919e-03, + 2DIAGNOSTIC, 25, -8.959690955125e-01, 8.650075078546e-05, 6.1317e-01, 2.4481e-03, + 2DIAGNOSTIC, 26, -8.959692091459e-01, 6.448415711097e-05, 6.1567e-01, 2.4960e-03, + 2DIAGNOSTIC, 27, -8.959694012072e-01, 4.312068417743e-05, 6.1813e-01, 2.4600e-03, + 2DIAGNOSTIC, 28, -8.959697257199e-01, 2.881135051095e-05, 6.2061e-01, 2.4810e-03, + 2DIAGNOSTIC, 29, -8.959702737231e-01, 1.796984639343e-05, 6.2309e-01, 2.4822e-03, + 2DIAGNOSTIC, 30, -8.959711975786e-01, 9.818359976640e-06, 6.2555e-01, 2.4588e-03, + 2DIAGNOSTIC, 31, -8.959727592514e-01, 5.529739038189e-06, 6.2808e-01, 2.5270e-03, + 2DIAGNOSTIC, 32, -8.959753901250e-01, 1.113667067523e-06, 6.3051e-01, 2.4390e-03, + 2DIAGNOSTIC, 33, -8.959797900216e-01, 1.157645638440e-06, 6.3290e-01, 2.3851e-03, + 2DIAGNOSTIC, 34, -8.959870906514e-01, 1.248303071459e-06, 6.3534e-01, 2.4359e-03, + 2DIAGNOSTIC, 35, -8.959990280040e-01, 1.412382138931e-06, 6.3788e-01, 2.5451e-03, + 2DIAGNOSTIC, 36, -8.960182684334e-01, 1.688999636720e-06, 6.4071e-01, 2.8298e-03, + 2DIAGNOSTIC, 37, -8.960393371460e-01, 2.054232169386e-06, 6.4306e-01, 2.3499e-03, + 2DIAGNOSTIC, 38, -8.958919460606e-01, 1.052711638017e-06, 6.4541e-01, 2.3499e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.382514941566e-01, 1.797693134862e+308, 8.9511e-01, 2.4970e-01, + 2DIAGNOSTIC, 2, -7.395504163057e-01, 1.797693134862e+308, 9.0854e-01, 1.3430e-02, + 2DIAGNOSTIC, 3, -7.405153925588e-01, 1.797693134862e+308, 9.2176e-01, 1.3218e-02, + 2DIAGNOSTIC, 4, -7.414125775897e-01, 1.797693134862e+308, 9.3511e-01, 1.3349e-02, + 2DIAGNOSTIC, 5, -7.419437453849e-01, 1.797693134862e+308, 9.4835e-01, 1.3245e-02, + 2DIAGNOSTIC, 6, -7.426458587552e-01, 1.797693134862e+308, 9.6075e-01, 1.2398e-02, + 2DIAGNOSTIC, 7, -7.434465669819e-01, 1.797693134862e+308, 9.7822e-01, 1.7474e-02, + 2DIAGNOSTIC, 8, -7.441847914869e-01, 1.797693134862e+308, 9.9266e-01, 1.4441e-02, + 2DIAGNOSTIC, 9, -7.444443991250e-01, 1.797693134862e+308, 1.0058e+00, 1.3131e-02, + 2DIAGNOSTIC, 10, -7.471656555923e-01, 6.475692661813e-04, 1.0211e+00, 1.5300e-02, + 2DIAGNOSTIC, 11, -7.484292222365e-01, 6.287459838491e-04, 1.0370e+00, 1.5860e-02, + 2DIAGNOSTIC, 12, -7.492095854651e-01, 6.223564172349e-04, 1.0522e+00, 1.5246e-02, + 2DIAGNOSTIC, 13, -7.502901195745e-01, 6.214644579441e-04, 1.0658e+00, 1.3637e-02, + 2DIAGNOSTIC, 14, -7.508859743939e-01, 6.048654899375e-04, 1.0832e+00, 1.7380e-02, + 2DIAGNOSTIC, 15, -7.511438221418e-01, 5.545218549040e-04, 1.0988e+00, 1.5626e-02, + 2DIAGNOSTIC, 16, -7.514489525919e-01, 4.832451598848e-04, 1.1142e+00, 1.5381e-02, + 2DIAGNOSTIC, 17, -7.514798966663e-01, 3.949710869824e-04, 1.1283e+00, 1.4031e-02, + 2DIAGNOSTIC, 18, -7.515368929461e-01, 2.977352364290e-04, 1.1462e+00, 1.7978e-02, + 2DIAGNOSTIC, 19, -7.515002926272e-01, 1.866308355877e-04, 1.1618e+00, 1.5614e-02, + 2DIAGNOSTIC, 20, -7.514659213665e-01, 1.203957194047e-04, 1.1769e+00, 1.5010e-02, + 2DIAGNOSTIC, 21, -7.514411064958e-01, 7.181539765235e-05, 1.1920e+00, 1.5099e-02, + 2DIAGNOSTIC, 22, -7.514047563471e-01, 3.360710066097e-05, 1.2059e+00, 1.3965e-02, + 2DIAGNOSTIC, 23, -7.514483813636e-01, 1.416247005906e-05, 1.2215e+00, 1.5542e-02, + 2DIAGNOSTIC, 24, -7.514351575534e-01, 4.306528744440e-06, 1.2368e+00, 1.5379e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.242296120711e-01, 1.797693134862e+308, 1.7684e+00, 5.3153e-01, + 2DIAGNOSTIC, 2, -6.249848077183e-01, 1.797693134862e+308, 1.8743e+00, 1.0593e-01, + 2DIAGNOSTIC, 3, -6.257588422782e-01, 1.797693134862e+308, 1.9813e+00, 1.0695e-01, + 2DIAGNOSTIC, 4, -6.264018092153e-01, 1.797693134862e+308, 2.0873e+00, 1.0608e-01, + 2DIAGNOSTIC, 5, -6.267174455256e-01, 1.797693134862e+308, 2.1935e+00, 1.0622e-01, + 2DIAGNOSTIC, 6, -6.269296917998e-01, 1.797693134862e+308, 2.2987e+00, 1.0515e-01, + 2DIAGNOSTIC, 7, -6.272192197837e-01, 1.797693134862e+308, 2.4224e+00, 1.2371e-01, + 2DIAGNOSTIC, 8, -6.275222251774e-01, 1.797693134862e+308, 2.5900e+00, 1.6761e-01, + 2DIAGNOSTIC, 9, -6.275746851323e-01, 1.797693134862e+308, 2.6951e+00, 1.0506e-01, + 2DIAGNOSTIC, 10, -6.275955517104e-01, 3.335885504458e-04, 2.7989e+00, 1.0377e-01, + 2DIAGNOSTIC, 11, -6.276286348610e-01, 2.294926011874e-04, 2.9184e+00, 1.1956e-01, + 2DIAGNOSTIC, 12, -6.277104984048e-01, 1.534874065692e-04, 3.0703e+00, 1.5189e-01, + 2DIAGNOSTIC, 13, -6.277401524301e-01, 1.029401829216e-04, 3.1879e+00, 1.1763e-01, + 2DIAGNOSTIC, 14, -6.277463971592e-01, 7.141976775980e-05, 3.3068e+00, 1.1885e-01, + 2DIAGNOSTIC, 15, -6.277414526296e-01, 4.728248045245e-05, 3.4544e+00, 1.4758e-01, + 2DIAGNOSTIC, 16, -6.277407149332e-01, 2.790346850907e-05, 3.5693e+00, 1.1489e-01, + 2DIAGNOSTIC, 17, -6.277396880158e-01, 1.586702421131e-05, 3.6854e+00, 1.1615e-01, + 2DIAGNOSTIC, 18, -6.277366585502e-01, 1.139006858682e-05, 3.7852e+00, 9.9788e-02, + 2DIAGNOSTIC, 19, -6.277356876804e-01, 7.745465608396e-06, 3.9098e+00, 1.2456e-01, + 2DIAGNOSTIC, 20, -6.277347126843e-01, 4.365135136707e-06, 4.0300e+00, 1.2024e-01, + 2DIAGNOSTIC, 21, -6.277299754926e-01, 1.619730952557e-06, 4.1521e+00, 1.2207e-01, + Elapsed time (stage 1): 4.2954e+00 + + +Total elapsed time: 1.0826e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:57:00 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:57:01 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x56314d2424f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.051, 56.773, -120.373] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56314d247fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbb4fa01010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x56314d243850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.051, 56.773, -120.373] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56314d240f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbb4c342010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x56314d25ab80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.051, 56.773, -120.373] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56314d247550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbb48c83010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x56314d25fd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.051, 56.773, -120.373] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56314d25dc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbb455c4010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x56314d261f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.051, 56.773, -120.373] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56314d2603a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbb41f05010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x56314d262540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.051, 56.773, -120.373] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56314d2624d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbb3e846010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.232035166969e-01, 1.797693134862e+308, 2.2060e-01, 2.2060e-01, + 2DIAGNOSTIC, 2, -7.255976654799e-01, 1.797693134862e+308, 2.2307e-01, 2.4750e-03, + 2DIAGNOSTIC, 3, -7.281011504874e-01, 1.797693134862e+308, 2.2547e-01, 2.3990e-03, + 2DIAGNOSTIC, 4, -7.311375035549e-01, 1.797693134862e+308, 2.2786e-01, 2.3851e-03, + 2DIAGNOSTIC, 5, -7.346355041079e-01, 1.797693134862e+308, 2.3002e-01, 2.1639e-03, + 2DIAGNOSTIC, 6, -7.354069789810e-01, 1.797693134862e+308, 2.3217e-01, 2.1510e-03, + 2DIAGNOSTIC, 7, -7.357992071387e-01, 1.797693134862e+308, 2.3464e-01, 2.4710e-03, + 2DIAGNOSTIC, 8, -7.372345589222e-01, 1.797693134862e+308, 2.3821e-01, 3.5651e-03, + 2DIAGNOSTIC, 9, -7.377180350654e-01, 1.797693134862e+308, 2.4063e-01, 2.4168e-03, + 2DIAGNOSTIC, 10, -7.375899867943e-01, 1.310159305278e-03, 2.4318e-01, 2.5489e-03, + 2DIAGNOSTIC, 11, -7.374752944747e-01, 9.215784821778e-04, 2.4567e-01, 2.4910e-03, + 2DIAGNOSTIC, 12, -7.373328032477e-01, 5.890404685563e-04, 2.4793e-01, 2.2631e-03, + 2DIAGNOSTIC, 13, -7.371909518379e-01, 3.235978625736e-04, 2.5014e-01, 2.2159e-03, + 2DIAGNOSTIC, 14, -7.371957799258e-01, 1.485093299593e-04, 2.5246e-01, 2.3139e-03, + 2DIAGNOSTIC, 15, -7.374968117514e-01, 8.162345353967e-05, 2.5474e-01, 2.2769e-03, + 2DIAGNOSTIC, 16, -7.378039443133e-01, 4.207842060630e-05, 2.5696e-01, 2.2259e-03, + 2DIAGNOSTIC, 17, -7.381702827768e-01, 1.988826192695e-05, 2.5966e-01, 2.6999e-03, + 2DIAGNOSTIC, 18, -7.383339756225e-01, 3.252026917155e-05, 2.6226e-01, 2.6019e-03, + 2DIAGNOSTIC, 19, -7.386401762749e-01, 5.711888536904e-05, 2.6513e-01, 2.8648e-03, + 2DIAGNOSTIC, 20, -7.385152027214e-01, 6.905543098307e-05, 2.6721e-01, 2.0781e-03, + 2DIAGNOSTIC, 21, -7.385240393822e-01, 7.170562838855e-05, 2.6932e-01, 2.1110e-03, + 2DIAGNOSTIC, 22, -7.386886454177e-01, 6.802560764617e-05, 2.7136e-01, 2.0468e-03, + 2DIAGNOSTIC, 23, -7.390737199827e-01, 6.246535620238e-05, 2.7358e-01, 2.2130e-03, + 2DIAGNOSTIC, 24, -7.390871482847e-01, 5.172846872196e-05, 2.7590e-01, 2.3201e-03, + 2DIAGNOSTIC, 25, -7.392444319432e-01, 4.429650367421e-05, 2.7818e-01, 2.2838e-03, + 2DIAGNOSTIC, 26, -7.397196574815e-01, 4.498193106378e-05, 2.8032e-01, 2.1379e-03, + 2DIAGNOSTIC, 27, -7.408200979649e-01, 6.219425059009e-05, 2.8269e-01, 2.3689e-03, + 2DIAGNOSTIC, 28, -7.413859875404e-01, 8.191158561769e-05, 2.8499e-01, 2.3010e-03, + 2DIAGNOSTIC, 29, -7.416532916175e-01, 1.003814104823e-04, 2.8782e-01, 2.8331e-03, + 2DIAGNOSTIC, 30, -7.416667381791e-01, 1.070579191871e-04, 2.8991e-01, 2.0859e-03, + 2DIAGNOSTIC, 31, -7.416091532989e-01, 1.026569535373e-04, 2.9217e-01, 2.2621e-03, + 2DIAGNOSTIC, 32, -7.416978700931e-01, 9.166001559066e-05, 2.9444e-01, 2.2688e-03, + 2DIAGNOSTIC, 33, -7.416195690186e-01, 7.622137809256e-05, 2.9684e-01, 2.4030e-03, + 2DIAGNOSTIC, 34, -7.415403825546e-01, 5.397620393086e-05, 2.9905e-01, 2.2111e-03, + 2DIAGNOSTIC, 35, -7.415014501368e-01, 2.939066156822e-05, 3.0206e-01, 3.0041e-03, + 2DIAGNOSTIC, 36, -7.414012119163e-01, 7.260346301306e-06, 3.0424e-01, 2.1830e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.227087514041e-01, 1.797693134862e+308, 5.5521e-01, 2.5097e-01, + 2DIAGNOSTIC, 2, -6.238364617799e-01, 1.797693134862e+308, 5.6891e-01, 1.3697e-02, + 2DIAGNOSTIC, 3, -6.248472172447e-01, 1.797693134862e+308, 5.8231e-01, 1.3400e-02, + 2DIAGNOSTIC, 4, -6.255290949773e-01, 1.797693134862e+308, 5.9575e-01, 1.3439e-02, + 2DIAGNOSTIC, 5, -6.257425659008e-01, 1.797693134862e+308, 6.1288e-01, 1.7127e-02, + 2DIAGNOSTIC, 6, -6.257827655192e-01, 1.797693134862e+308, 6.3048e-01, 1.7606e-02, + 2DIAGNOSTIC, 7, -6.257703010654e-01, 1.797693134862e+308, 6.4576e-01, 1.5274e-02, + 2DIAGNOSTIC, 8, -6.257421351457e-01, 1.797693134862e+308, 6.6112e-01, 1.5364e-02, + 2DIAGNOSTIC, 9, -6.257743833089e-01, 1.797693134862e+308, 6.7829e-01, 1.7172e-02, + 2DIAGNOSTIC, 10, -6.257838584540e-01, 2.539379533595e-04, 6.9431e-01, 1.6020e-02, + 2DIAGNOSTIC, 11, -6.257846769584e-01, 1.242428919834e-04, 7.0916e-01, 1.4845e-02, + 2DIAGNOSTIC, 12, -6.257737468849e-01, 4.697979602866e-05, 7.2539e-01, 1.6235e-02, + 2DIAGNOSTIC, 13, -6.257272978954e-01, 1.078555130359e-05, 7.4266e-01, 1.7269e-02, + 2DIAGNOSTIC, 14, -6.257381176745e-01, 1.330337146097e-06, 7.6209e-01, 1.9425e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.247732385836e-01, 1.797693134862e+308, 1.1533e+00, 3.9120e-01, + 2DIAGNOSTIC, 2, -5.255844713827e-01, 1.797693134862e+308, 1.2466e+00, 9.3271e-02, + 2DIAGNOSTIC, 3, -5.265278335759e-01, 1.797693134862e+308, 1.3409e+00, 9.4375e-02, + 2DIAGNOSTIC, 4, -5.272726280144e-01, 1.797693134862e+308, 1.4380e+00, 9.7083e-02, + 2DIAGNOSTIC, 5, -5.278249557669e-01, 1.797693134862e+308, 1.5338e+00, 9.5746e-02, + 2DIAGNOSTIC, 6, -5.283208503523e-01, 1.797693134862e+308, 1.6244e+00, 9.0605e-02, + 2DIAGNOSTIC, 7, -5.288685036028e-01, 1.797693134862e+308, 1.7297e+00, 1.0534e-01, + 2DIAGNOSTIC, 8, -5.292516681001e-01, 1.797693134862e+308, 1.8885e+00, 1.5883e-01, + 2DIAGNOSTIC, 9, -5.292986747028e-01, 1.797693134862e+308, 2.0081e+00, 1.1952e-01, + 2DIAGNOSTIC, 10, -5.293040476068e-01, 5.694979183916e-04, 2.1094e+00, 1.0133e-01, + 2DIAGNOSTIC, 11, -5.293066707104e-01, 4.104655953268e-04, 2.2039e+00, 9.4533e-02, + 2DIAGNOSTIC, 12, -5.293072890095e-01, 2.769534813860e-04, 2.2870e+00, 8.3024e-02, + 2DIAGNOSTIC, 13, -5.293100527301e-01, 1.778081749992e-04, 2.3819e+00, 9.4927e-02, + 2DIAGNOSTIC, 14, -5.293238428670e-01, 1.059664621018e-04, 2.4881e+00, 1.0625e-01, + 2DIAGNOSTIC, 15, -5.293448174387e-01, 5.475033718651e-05, 2.5992e+00, 1.1111e-01, + 2DIAGNOSTIC, 16, -5.293331725863e-01, 2.104303628200e-05, 2.7579e+00, 1.5870e-01, + 2DIAGNOSTIC, 17, -5.293377765041e-01, 6.726606064274e-06, 2.8889e+00, 1.3092e-01, + 2DIAGNOSTIC, 18, -5.293349844214e-01, 4.883114806321e-06, 2.9952e+00, 1.0636e-01, + 2DIAGNOSTIC, 19, -5.293330901198e-01, 4.208634488793e-06, 3.1015e+00, 1.0625e-01, + 2DIAGNOSTIC, 20, -5.293330686755e-01, 3.502592676605e-06, 3.2097e+00, 1.0824e-01, + 2DIAGNOSTIC, 21, -5.293322106669e-01, 2.738195454002e-06, 3.3145e+00, 1.0483e-01, + 2DIAGNOSTIC, 22, -5.293317439179e-01, 1.942832826306e-06, 3.4182e+00, 1.0366e-01, + 2DIAGNOSTIC, 23, -5.293280959901e-01, 1.142911313194e-06, 3.5503e+00, 1.3206e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.605327037008e-01, 1.797693134862e+308, 4.7560e+00, 1.2058e+00, + 2DIAGNOSTIC, 2, -4.607731727051e-01, 1.797693134862e+308, 5.3617e+00, 6.0564e-01, + 2DIAGNOSTIC, 3, -4.607987574362e-01, 1.797693134862e+308, 5.9155e+00, 5.5380e-01, + 2DIAGNOSTIC, 4, -4.608001005905e-01, 1.797693134862e+308, 6.3856e+00, 4.7016e-01, + 2DIAGNOSTIC, 5, -4.608177946872e-01, 1.797693134862e+308, 6.9751e+00, 5.8949e-01, + 2DIAGNOSTIC, 6, -4.608348806456e-01, 1.797693134862e+308, 7.6683e+00, 6.9317e-01, + 2DIAGNOSTIC, 7, -4.608259146783e-01, 1.797693134862e+308, 8.2991e+00, 6.3081e-01, + 2DIAGNOSTIC, 8, -4.608284171692e-01, 1.797693134862e+308, 8.9600e+00, 6.6095e-01, + 2DIAGNOSTIC, 9, -4.608269907339e-01, 1.797693134862e+308, 9.5133e+00, 5.5324e-01, + 2DIAGNOSTIC, 10, -4.608268083520e-01, 2.642307986418e-05, 1.0139e+01, 6.2554e-01, + 2DIAGNOSTIC, 11, -4.608278141533e-01, 8.583555933028e-06, 1.0821e+01, 6.8217e-01, + 2DIAGNOSTIC, 12, -4.608274023071e-01, 5.524978110696e-06, 1.1596e+01, 7.7464e-01, + 2DIAGNOSTIC, 13, -4.608272737650e-01, 3.907617144513e-06, 1.2216e+01, 6.2051e-01, + 2DIAGNOSTIC, 14, -4.608271434909e-01, 2.423717105973e-06, 1.2892e+01, 6.7605e-01, + 2DIAGNOSTIC, 15, -4.608270563682e-01, 1.824915835072e-06, 1.3515e+01, 6.2245e-01, + 2DIAGNOSTIC, 16, -4.608266804768e-01, 1.981813310126e-06, 1.4084e+01, 5.6931e-01, + 2DIAGNOSTIC, 17, -4.608266525111e-01, 1.791607020005e-06, 1.4688e+01, 6.0406e-01, + 2DIAGNOSTIC, 18, -4.608265795359e-01, 1.714998775666e-06, 1.5295e+01, 6.0691e-01, + 2DIAGNOSTIC, 19, -4.608263515731e-01, 1.597898905727e-06, 1.5789e+01, 4.9376e-01, + 2DIAGNOSTIC, 20, -4.608263352914e-01, 1.492637507559e-06, 1.6350e+01, 5.6115e-01, + 2DIAGNOSTIC, 21, -4.608264575741e-01, 1.439991404527e-06, 1.6912e+01, 5.6184e-01, + 2DIAGNOSTIC, 22, -4.608263815377e-01, 1.385312920169e-06, 1.7454e+01, 5.4184e-01, + 2DIAGNOSTIC, 23, -4.608262050678e-01, 1.332941924240e-06, 1.8062e+01, 6.0843e-01, + 2DIAGNOSTIC, 24, -4.608260540892e-01, 1.282609521772e-06, 1.8600e+01, 5.3811e-01, + 2DIAGNOSTIC, 25, -4.608257027445e-01, 1.229779175771e-06, 1.9165e+01, 5.6449e-01, + 2DIAGNOSTIC, 26, -4.608254742009e-01, 1.170683494804e-06, 1.9852e+01, 6.8771e-01, + 2DIAGNOSTIC, 27, -4.608253987173e-01, 1.118586390306e-06, 2.0384e+01, 5.3135e-01, + 2DIAGNOSTIC, 28, -4.608251833731e-01, 1.069609808071e-06, 2.0919e+01, 5.3583e-01, + 2DIAGNOSTIC, 29, -4.608251409498e-01, 1.024683940178e-06, 2.1461e+01, 5.4144e-01, + Elapsed time (stage 0): 2.1827e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.207844111597e-01, 1.797693134862e+308, 1.8465e-01, 1.8464e-01, + 2DIAGNOSTIC, 2, -7.233643563457e-01, 1.797693134862e+308, 1.8667e-01, 2.0258e-03, + 2DIAGNOSTIC, 3, -7.267478013384e-01, 1.797693134862e+308, 1.8864e-01, 1.9710e-03, + 2DIAGNOSTIC, 4, -7.311486790783e-01, 1.797693134862e+308, 1.9057e-01, 1.9269e-03, + 2DIAGNOSTIC, 5, -7.358394779718e-01, 1.797693134862e+308, 1.9251e-01, 1.9388e-03, + 2DIAGNOSTIC, 6, -7.394608055808e-01, 1.797693134862e+308, 1.9457e-01, 2.0621e-03, + 2DIAGNOSTIC, 7, -7.399606467848e-01, 1.797693134862e+308, 1.9695e-01, 2.3811e-03, + 2DIAGNOSTIC, 8, -7.400577874049e-01, 1.797693134862e+308, 1.9899e-01, 2.0361e-03, + 2DIAGNOSTIC, 9, -7.401981114731e-01, 1.797693134862e+308, 2.0109e-01, 2.1009e-03, + 2DIAGNOSTIC, 10, -7.405850007029e-01, 1.884096048571e-03, 2.0339e-01, 2.3031e-03, + 2DIAGNOSTIC, 11, -7.408100398349e-01, 1.337579399812e-03, 2.0598e-01, 2.5861e-03, + 2DIAGNOSTIC, 12, -7.410584542154e-01, 8.547464961646e-04, 2.0886e-01, 2.8820e-03, + 2DIAGNOSTIC, 13, -7.412494729515e-01, 4.757401537858e-04, 2.1157e-01, 2.7092e-03, + 2DIAGNOSTIC, 14, -7.414489835657e-01, 2.328484598154e-04, 2.1463e-01, 3.0639e-03, + 2DIAGNOSTIC, 15, -7.418734786786e-01, 1.304994485285e-04, 2.1720e-01, 2.5651e-03, + 2DIAGNOSTIC, 16, -7.419633487265e-01, 1.181862256178e-04, 2.2002e-01, 2.8181e-03, + 2DIAGNOSTIC, 17, -7.420051072876e-01, 1.090449174450e-04, 2.2325e-01, 3.2370e-03, + 2DIAGNOSTIC, 18, -7.418696057759e-01, 9.034244041332e-05, 2.2577e-01, 2.5148e-03, + 2DIAGNOSTIC, 19, -7.420426746371e-01, 7.168697408858e-05, 2.2814e-01, 2.3699e-03, + 2DIAGNOSTIC, 20, -7.420578458623e-01, 5.587055167392e-05, 2.3561e-01, 7.4720e-03, + 2DIAGNOSTIC, 21, -7.420578457087e-01, 4.054288889480e-05, 2.4310e-01, 7.4892e-03, + 2DIAGNOSTIC, 22, -7.420578457087e-01, 2.743221834252e-05, 2.4574e-01, 2.6379e-03, + 2DIAGNOSTIC, 23, -7.420578457087e-01, 1.627777147883e-05, 2.4982e-01, 4.0848e-03, + 2DIAGNOSTIC, 24, -7.420578457087e-01, 7.655096296529e-06, 2.5236e-01, 2.5370e-03, + 2DIAGNOSTIC, 25, -7.420578457087e-01, 5.585755302837e-06, 2.5578e-01, 3.4230e-03, + 2DIAGNOSTIC, 26, -7.420578457087e-01, 4.600127000452e-06, 2.5938e-01, 3.6008e-03, + 2DIAGNOSTIC, 27, -7.420578457087e-01, 4.053896424633e-06, 2.6333e-01, 3.9480e-03, + 2DIAGNOSTIC, 28, -7.420578457087e-01, 1.349212609927e-06, 2.6676e-01, 3.4330e-03, + 2DIAGNOSTIC, 29, -7.420578457087e-01, 1.101325422338e-06, 2.7021e-01, 3.4490e-03, + 2DIAGNOSTIC, 30, -7.420578457087e-01, 1.064473126727e-06, 2.7351e-01, 3.2949e-03, + 2DIAGNOSTIC, 31, -7.420578457087e-01, 1.030005481059e-06, 2.7603e-01, 2.5229e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.266035234076e-01, 1.797693134862e+308, 4.8250e-01, 2.0647e-01, + 2DIAGNOSTIC, 2, -6.280245362000e-01, 1.797693134862e+308, 4.9748e-01, 1.4980e-02, + 2DIAGNOSTIC, 3, -6.296094116827e-01, 1.797693134862e+308, 5.1159e-01, 1.4114e-02, + 2DIAGNOSTIC, 4, -6.310144608476e-01, 1.797693134862e+308, 5.2572e-01, 1.4130e-02, + 2DIAGNOSTIC, 5, -6.327235652521e-01, 1.797693134862e+308, 5.3991e-01, 1.4188e-02, + 2DIAGNOSTIC, 6, -6.337276296184e-01, 1.797693134862e+308, 5.5658e-01, 1.6668e-02, + 2DIAGNOSTIC, 7, -6.342806177943e-01, 1.797693134862e+308, 5.7331e-01, 1.6730e-02, + 2DIAGNOSTIC, 8, -6.344976971648e-01, 1.797693134862e+308, 5.8918e-01, 1.5869e-02, + 2DIAGNOSTIC, 9, -6.346883587777e-01, 1.797693134862e+308, 6.0297e-01, 1.3796e-02, + 2DIAGNOSTIC, 10, -6.349131073586e-01, 8.690195855730e-04, 6.1915e-01, 1.6178e-02, + 2DIAGNOSTIC, 11, -6.349474442048e-01, 6.181196835159e-04, 6.3347e-01, 1.4321e-02, + 2DIAGNOSTIC, 12, -6.349530318615e-01, 4.071104469996e-04, 6.4971e-01, 1.6236e-02, + 2DIAGNOSTIC, 13, -6.349769037027e-01, 2.475599876681e-04, 6.6828e-01, 1.8571e-02, + 2DIAGNOSTIC, 14, -6.349931142072e-01, 1.331604241873e-04, 6.8840e-01, 2.0121e-02, + 2DIAGNOSTIC, 15, -6.349821313607e-01, 7.224823070877e-05, 7.0132e-01, 1.2921e-02, + 2DIAGNOSTIC, 16, -6.349893684454e-01, 4.061746611057e-05, 7.1356e-01, 1.2236e-02, + 2DIAGNOSTIC, 17, -6.349800925404e-01, 2.350092897943e-05, 7.2577e-01, 1.2209e-02, + 2DIAGNOSTIC, 18, -6.349870737572e-01, 1.181727738011e-05, 7.3942e-01, 1.3655e-02, + 2DIAGNOSTIC, 19, -6.349927224075e-01, 4.919295606781e-06, 7.5357e-01, 1.4146e-02, + 2DIAGNOSTIC, 20, -6.349838525204e-01, 3.239420080743e-06, 7.6551e-01, 1.1944e-02, + 2DIAGNOSTIC, 21, -6.349768884319e-01, 2.168074439257e-06, 7.7920e-01, 1.3692e-02, + 2DIAGNOSTIC, 22, -6.349830572304e-01, 1.365574856062e-06, 7.9472e-01, 1.5516e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.255036903441e-01, 1.797693134862e+308, 1.1714e+00, 3.7669e-01, + 2DIAGNOSTIC, 2, -5.266039414755e-01, 1.797693134862e+308, 1.2711e+00, 9.9647e-02, + 2DIAGNOSTIC, 3, -5.278161971012e-01, 1.797693134862e+308, 1.3707e+00, 9.9600e-02, + 2DIAGNOSTIC, 4, -5.287044959946e-01, 1.797693134862e+308, 1.4615e+00, 9.0826e-02, + 2DIAGNOSTIC, 5, -5.291843676031e-01, 1.797693134862e+308, 1.5476e+00, 8.6067e-02, + 2DIAGNOSTIC, 6, -5.294977485428e-01, 1.797693134862e+308, 1.6397e+00, 9.2156e-02, + 2DIAGNOSTIC, 7, -5.299587420620e-01, 1.797693134862e+308, 1.7543e+00, 1.1459e-01, + 2DIAGNOSTIC, 8, -5.302511917089e-01, 1.797693134862e+308, 1.9535e+00, 1.9921e-01, + 2DIAGNOSTIC, 9, -5.302543129051e-01, 1.797693134862e+308, 2.0558e+00, 1.0234e-01, + 2DIAGNOSTIC, 10, -5.302622043017e-01, 5.564675421834e-04, 2.1580e+00, 1.0211e-01, + 2DIAGNOSTIC, 11, -5.302880487339e-01, 3.684339883170e-04, 2.2618e+00, 1.0381e-01, + 2DIAGNOSTIC, 12, -5.303259027412e-01, 2.287895576675e-04, 2.3643e+00, 1.0256e-01, + 2DIAGNOSTIC, 13, -5.303880612480e-01, 1.420098885282e-04, 2.4668e+00, 1.0242e-01, + 2DIAGNOSTIC, 14, -5.304461450431e-01, 9.110648029814e-05, 2.5664e+00, 9.9647e-02, + 2DIAGNOSTIC, 15, -5.305066999417e-01, 5.826895946648e-05, 2.6687e+00, 1.0235e-01, + 2DIAGNOSTIC, 16, -5.305300241151e-01, 3.534957975525e-05, 2.8208e+00, 1.5202e-01, + 2DIAGNOSTIC, 17, -5.305262050773e-01, 2.623849847368e-05, 2.9170e+00, 9.6227e-02, + 2DIAGNOSTIC, 18, -5.305269661628e-01, 2.464583525724e-05, 3.0122e+00, 9.5244e-02, + 2DIAGNOSTIC, 19, -5.305268326035e-01, 2.117388717417e-05, 3.1132e+00, 1.0091e-01, + 2DIAGNOSTIC, 20, -5.305280323387e-01, 1.646470384772e-05, 3.2134e+00, 1.0022e-01, + 2DIAGNOSTIC, 21, -5.305288339099e-01, 1.149981052373e-05, 3.3144e+00, 1.0103e-01, + 2DIAGNOSTIC, 22, -5.305300457938e-01, 7.004499195558e-06, 3.6623e+00, 3.4791e-01, + 2DIAGNOSTIC, 23, -5.305300457497e-01, 3.817713106362e-06, 4.0089e+00, 3.4661e-01, + 2DIAGNOSTIC, 24, -5.305300457497e-01, 1.933761214448e-06, 4.1239e+00, 1.1501e-01, + 2DIAGNOSTIC, 25, -5.305300457497e-01, 1.428000064085e-06, 4.2451e+00, 1.2119e-01, + 2DIAGNOSTIC, 26, -5.305300457497e-01, 1.429864612192e-06, 4.3673e+00, 1.2215e-01, + 2DIAGNOSTIC, 27, -5.305300457497e-01, 1.335888275784e-06, 4.4888e+00, 1.2149e-01, + 2DIAGNOSTIC, 28, -5.305300457497e-01, 1.248987098738e-06, 4.6234e+00, 1.3468e-01, + 2DIAGNOSTIC, 29, -5.305300457497e-01, 1.154990114639e-06, 4.7333e+00, 1.0990e-01, + 2DIAGNOSTIC, 30, -5.305300457497e-01, 1.083193069490e-06, 4.8458e+00, 1.1250e-01, + 2DIAGNOSTIC, 31, -5.305300457497e-01, 1.027248340515e-06, 4.9730e+00, 1.2718e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.601502012796e-01, 1.797693134862e+308, 6.2247e+00, 1.2517e+00, + 2DIAGNOSTIC, 2, -4.605202649051e-01, 1.797693134862e+308, 6.7827e+00, 5.5798e-01, + 2DIAGNOSTIC, 3, -4.607618485980e-01, 1.797693134862e+308, 7.3805e+00, 5.9782e-01, + 2DIAGNOSTIC, 4, -4.609606622865e-01, 1.797693134862e+308, 7.9759e+00, 5.9532e-01, + 2DIAGNOSTIC, 5, -4.612068570450e-01, 1.797693134862e+308, 9.1173e+00, 1.1415e+00, + 2DIAGNOSTIC, 6, -4.612158345689e-01, 1.797693134862e+308, 9.7939e+00, 6.7663e-01, + 2DIAGNOSTIC, 7, -4.612140457200e-01, 1.797693134862e+308, 1.0469e+01, 6.7503e-01, + 2DIAGNOSTIC, 8, -4.612122787429e-01, 1.797693134862e+308, 1.1068e+01, 5.9949e-01, + 2DIAGNOSTIC, 9, -4.612125307407e-01, 1.797693134862e+308, 1.2054e+01, 9.8525e-01, + 2DIAGNOSTIC, 10, -4.612124077868e-01, 1.328421075369e-04, 1.2834e+01, 7.8003e-01, + 2DIAGNOSTIC, 11, -4.612124279323e-01, 7.378507309148e-05, 1.3598e+01, 7.6414e-01, + 2DIAGNOSTIC, 12, -4.612122315217e-01, 3.719471213581e-05, 1.4263e+01, 6.6475e-01, + 2DIAGNOSTIC, 13, -4.612119045217e-01, 1.443706530098e-05, 1.4924e+01, 6.6180e-01, + 2DIAGNOSTIC, 14, -4.612118271961e-01, 2.286758944162e-06, 1.5751e+01, 8.2666e-01, + 2DIAGNOSTIC, 15, -4.612117677722e-01, 1.858241841887e-06, 1.6444e+01, 6.9281e-01, + 2DIAGNOSTIC, 16, -4.612115718054e-01, 1.846937995889e-06, 1.7040e+01, 5.9645e-01, + 2DIAGNOSTIC, 17, -4.612115524710e-01, 1.786626483584e-06, 1.7783e+01, 7.4270e-01, + 2DIAGNOSTIC, 18, -4.612114518819e-01, 1.676770115644e-06, 1.8474e+01, 6.9138e-01, + 2DIAGNOSTIC, 19, -4.612113617639e-01, 1.592252282599e-06, 1.9063e+01, 5.8889e-01, + 2DIAGNOSTIC, 20, -4.612111614744e-01, 1.513725236650e-06, 1.9774e+01, 7.1056e-01, + 2DIAGNOSTIC, 21, -4.612111623229e-01, 1.450692389604e-06, 2.0373e+01, 5.9932e-01, + 2DIAGNOSTIC, 22, -4.612112702740e-01, 1.397070480802e-06, 2.1059e+01, 6.8549e-01, + 2DIAGNOSTIC, 23, -4.612114279555e-01, 1.348017488280e-06, 2.1717e+01, 6.5846e-01, + 2DIAGNOSTIC, 24, -4.612114317013e-01, 1.304437367032e-06, 2.2508e+01, 7.9043e-01, + 2DIAGNOSTIC, 25, -4.612111380951e-01, 1.257909683007e-06, 2.3111e+01, 6.0310e-01, + 2DIAGNOSTIC, 26, -4.612112711649e-01, 1.215076959861e-06, 2.3790e+01, 6.7888e-01, + 2DIAGNOSTIC, 27, -4.612112161647e-01, 1.174278860150e-06, 2.4450e+01, 6.5997e-01, + 2DIAGNOSTIC, 28, -4.612111127381e-01, 1.132192011560e-06, 2.5099e+01, 6.4950e-01, + 2DIAGNOSTIC, 29, -4.612110777588e-01, 1.091000122883e-06, 2.5765e+01, 6.6623e-01, + 2DIAGNOSTIC, 30, -4.612105274183e-01, 1.037856993111e-06, 2.6402e+01, 6.3629e-01, + Elapsed time (stage 1): 2.6769e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.114561617577e-01, 1.797693134862e+308, 2.4397e-01, 2.4397e-01, + 1DIAGNOSTIC, 2, -9.203731614457e-01, 1.797693134862e+308, 3.3661e-01, 9.2645e-02, + 1DIAGNOSTIC, 3, -9.293590723344e-01, 1.797693134862e+308, 4.3976e-01, 1.0315e-01, + 1DIAGNOSTIC, 4, -9.361572877594e-01, 1.797693134862e+308, 5.3399e-01, 9.4227e-02, + 1DIAGNOSTIC, 5, -9.408811577569e-01, 1.797693134862e+308, 6.2975e-01, 9.5763e-02, + 1DIAGNOSTIC, 6, -9.445822816609e-01, 1.797693134862e+308, 7.2383e-01, 9.4084e-02, + 1DIAGNOSTIC, 7, -9.472826708797e-01, 1.797693134862e+308, 8.1845e-01, 9.4621e-02, + 1DIAGNOSTIC, 8, -9.496055088005e-01, 1.797693134862e+308, 9.1028e-01, 9.1831e-02, + 1DIAGNOSTIC, 9, -9.516963974599e-01, 1.797693134862e+308, 1.0109e+00, 1.0057e-01, + 1DIAGNOSTIC, 10, -9.534108811481e-01, 2.708747123315e-03, 1.1047e+00, 9.3851e-02, + 1DIAGNOSTIC, 11, -9.546462779729e-01, 1.946688650166e-03, 1.2018e+00, 9.7117e-02, + 1DIAGNOSTIC, 12, -9.555674505850e-01, 1.383146852713e-03, 1.2983e+00, 9.6518e-02, + 1DIAGNOSTIC, 13, -9.562780363699e-01, 1.005173286926e-03, 1.3969e+00, 9.8520e-02, + 1DIAGNOSTIC, 14, -9.566864331024e-01, 7.441514210650e-04, 1.4895e+00, 9.2619e-02, + 1DIAGNOSTIC, 15, -9.573520802629e-01, 5.575289757077e-04, 1.5847e+00, 9.5261e-02, + 1DIAGNOSTIC, 16, -9.570091912779e-01, 4.058586249275e-04, 1.6855e+00, 1.0075e-01, + 1DIAGNOSTIC, 17, -9.575916290597e-01, 2.928968642576e-04, 1.7864e+00, 1.0086e-01, + 1DIAGNOSTIC, 18, -9.571153678485e-01, 1.958093324198e-04, 1.8816e+00, 9.5207e-02, + 1DIAGNOSTIC, 19, -9.578042063936e-01, 1.347231867801e-04, 1.9772e+00, 9.5596e-02, + 1DIAGNOSTIC, 20, -9.572607214755e-01, 8.441726461513e-05, 2.0707e+00, 9.3530e-02, + 1DIAGNOSTIC, 21, -9.579094230840e-01, 5.821701845509e-05, 2.1631e+00, 9.2433e-02, + 1DIAGNOSTIC, 22, -9.573576178552e-01, 3.382034393744e-05, 2.2648e+00, 1.0163e-01, + 1DIAGNOSTIC, 23, -9.579663928002e-01, 2.583098276060e-05, 2.3579e+00, 9.3133e-02, + 1DIAGNOSTIC, 24, -9.573918091323e-01, 1.371499024718e-05, 2.4561e+00, 9.8244e-02, + 1DIAGNOSTIC, 25, -9.579753993611e-01, 1.670418908728e-05, 2.5533e+00, 9.7138e-02, + 1DIAGNOSTIC, 26, -9.574229587368e-01, 7.344455919052e-06, 2.6481e+00, 9.4869e-02, + 1DIAGNOSTIC, 27, -9.579787606202e-01, 1.106158461882e-05, 2.7412e+00, 9.3069e-02, + 1DIAGNOSTIC, 28, -9.574267168143e-01, 2.227610887980e-06, 2.8342e+00, 9.3035e-02, + 1DIAGNOSTIC, 29, -9.579693132209e-01, 6.939634561685e-06, 2.9298e+00, 9.5605e-02, + 1DIAGNOSTIC, 30, -9.574441076725e-01, -2.014483414456e-07, 3.0240e+00, 9.4134e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.050819331402e-01, 1.797693134862e+308, 3.8578e+00, 8.3382e-01, + 1DIAGNOSTIC, 2, -9.100823189445e-01, 1.797693134862e+308, 4.5147e+00, 6.5685e-01, + 1DIAGNOSTIC, 3, -9.142170262135e-01, 1.797693134862e+308, 5.1770e+00, 6.6235e-01, + 1DIAGNOSTIC, 4, -9.174850544199e-01, 1.797693134862e+308, 5.8454e+00, 6.6844e-01, + 1DIAGNOSTIC, 5, -9.200687038969e-01, 1.797693134862e+308, 6.5091e+00, 6.6364e-01, + 1DIAGNOSTIC, 6, -9.221967632762e-01, 1.797693134862e+308, 7.1860e+00, 6.7692e-01, + 1DIAGNOSTIC, 7, -9.240611836770e-01, 1.797693134862e+308, 7.8319e+00, 6.4591e-01, + 1DIAGNOSTIC, 8, -9.255446153456e-01, 1.797693134862e+308, 8.4835e+00, 6.5160e-01, + 1DIAGNOSTIC, 9, -9.269162892500e-01, 1.797693134862e+308, 9.1353e+00, 6.5179e-01, + 1DIAGNOSTIC, 10, -9.280129900280e-01, 1.518328942394e-03, 9.7855e+00, 6.5020e-01, + 1DIAGNOSTIC, 11, -9.289849132712e-01, 1.138347036698e-03, 1.0454e+01, 6.6841e-01, + 1DIAGNOSTIC, 12, -9.298569141228e-01, 8.695573720868e-04, 1.1127e+01, 6.7275e-01, + 1DIAGNOSTIC, 13, -9.306289196050e-01, 6.791758321585e-04, 1.1772e+01, 6.4576e-01, + 1DIAGNOSTIC, 14, -9.313630016081e-01, 5.418343155802e-04, 1.2423e+01, 6.5095e-01, + 1DIAGNOSTIC, 15, -9.319391004290e-01, 4.377812639691e-04, 1.3080e+01, 6.5638e-01, + 1DIAGNOSTIC, 16, -9.325856933831e-01, 3.596542099604e-04, 1.3724e+01, 6.4409e-01, + 1DIAGNOSTIC, 17, -9.331074416195e-01, 3.005242576856e-04, 1.4396e+01, 6.7254e-01, + 1DIAGNOSTIC, 18, -9.336010276319e-01, 2.537367678538e-04, 1.5076e+01, 6.8006e-01, + 1DIAGNOSTIC, 19, -9.340798883443e-01, 2.181671528720e-04, 1.5748e+01, 6.7197e-01, + 1DIAGNOSTIC, 20, -9.345475222690e-01, 1.897989867397e-04, 1.6401e+01, 6.5307e-01, + 1DIAGNOSTIC, 21, -9.350050829297e-01, 1.672506811051e-04, 1.7059e+01, 6.5732e-01, + 1DIAGNOSTIC, 22, -9.354665742449e-01, 1.496610361851e-04, 1.7738e+01, 6.7949e-01, + 1DIAGNOSTIC, 23, -9.359183639428e-01, 1.358557679141e-04, 1.8416e+01, 6.7745e-01, + 1DIAGNOSTIC, 24, -9.363715558593e-01, 1.256198146489e-04, 1.9087e+01, 6.7144e-01, + 1DIAGNOSTIC, 25, -9.368334877337e-01, 1.170705012379e-04, 1.9764e+01, 6.7663e-01, + 1DIAGNOSTIC, 26, -9.373056067448e-01, 1.113219261962e-04, 2.0429e+01, 6.6544e-01, + 1DIAGNOSTIC, 27, -9.377894287382e-01, 1.068939880123e-04, 2.1073e+01, 6.4389e-01, + 1DIAGNOSTIC, 28, -9.382949548153e-01, 1.036004583519e-04, 2.1722e+01, 6.4845e-01, + 1DIAGNOSTIC, 29, -9.388270658139e-01, 1.013941697315e-04, 2.2379e+01, 6.5707e-01, + 1DIAGNOSTIC, 30, -9.393808685289e-01, 1.001361568656e-04, 2.3054e+01, 6.7505e-01, + 1DIAGNOSTIC, 31, -9.399037670501e-01, 9.912180182737e-05, 2.3730e+01, 6.7610e-01, + 1DIAGNOSTIC, 32, -9.403637431764e-01, 9.756811468166e-05, 2.4407e+01, 6.7725e-01, + 1DIAGNOSTIC, 33, -9.407694282564e-01, 9.479695885950e-05, 2.5073e+01, 6.6560e-01, + 1DIAGNOSTIC, 34, -9.411329709620e-01, 9.052832126265e-05, 2.5753e+01, 6.8007e-01, + 1DIAGNOSTIC, 35, -9.414606042814e-01, 8.478756522893e-05, 2.6416e+01, 6.6360e-01, + 1DIAGNOSTIC, 36, -9.417551419207e-01, 7.780762925980e-05, 2.7096e+01, 6.7960e-01, + 1DIAGNOSTIC, 37, -9.420202003528e-01, 6.999171011713e-05, 2.7757e+01, 6.6106e-01, + 1DIAGNOSTIC, 38, -9.422550166291e-01, 6.188132264909e-05, 2.8433e+01, 6.7627e-01, + 1DIAGNOSTIC, 39, -9.424750690420e-01, 5.417947816897e-05, 2.9075e+01, 6.4138e-01, + 1DIAGNOSTIC, 40, -9.426767535269e-01, 4.745987542393e-05, 2.9744e+01, 6.6965e-01, + 1DIAGNOSTIC, 41, -9.428619981921e-01, 4.181695886795e-05, 3.0413e+01, 6.6888e-01, + 1DIAGNOSTIC, 42, -9.430315495029e-01, 3.703867683170e-05, 3.1093e+01, 6.7975e-01, + 1DIAGNOSTIC, 43, -9.431900244370e-01, 3.296760527044e-05, 3.1767e+01, 6.7444e-01, + 1DIAGNOSTIC, 44, -9.433356823095e-01, 2.948372142192e-05, 3.2438e+01, 6.7076e-01, + 1DIAGNOSTIC, 45, -9.434810813846e-01, 2.656701133251e-05, 3.3106e+01, 6.6746e-01, + 1DIAGNOSTIC, 46, -9.436077932806e-01, 2.405538033773e-05, 3.3782e+01, 6.7662e-01, + 1DIAGNOSTIC, 47, -9.437261431863e-01, 2.186931846481e-05, 3.4460e+01, 6.7798e-01, + 1DIAGNOSTIC, 48, -9.438371314534e-01, 1.991132167532e-05, 3.5122e+01, 6.6217e-01, + 1DIAGNOSTIC, 49, -9.439480855124e-01, 1.821979391619e-05, 3.5781e+01, 6.5852e-01, + 1DIAGNOSTIC, 50, -9.440458923939e-01, 1.670974629215e-05, 3.6456e+01, 6.7479e-01, + 1DIAGNOSTIC, 51, -9.441284833519e-01, 1.529545935696e-05, 3.7133e+01, 6.7754e-01, + 1DIAGNOSTIC, 52, -9.442164101514e-01, 1.401868127826e-05, 3.7799e+01, 6.6579e-01, + 1DIAGNOSTIC, 53, -9.442958339584e-01, 1.285139804427e-05, 3.8440e+01, 6.4099e-01, + 1DIAGNOSTIC, 54, -9.443723208212e-01, 1.178402799309e-05, 3.9098e+01, 6.5778e-01, + 1DIAGNOSTIC, 55, -9.444448240053e-01, 1.087072818592e-05, 3.9741e+01, 6.4304e-01, + 1DIAGNOSTIC, 56, -9.445136583105e-01, 1.005091619556e-05, 4.0384e+01, 6.4277e-01, + 1DIAGNOSTIC, 57, -9.445786673060e-01, 9.314673501817e-06, 4.1055e+01, 6.7095e-01, + 1DIAGNOSTIC, 58, -9.446319256260e-01, 8.609835178093e-06, 4.1741e+01, 6.8618e-01, + 1DIAGNOSTIC, 59, -9.446828888941e-01, 7.978118999406e-06, 4.2410e+01, 6.6948e-01, + 1DIAGNOSTIC, 60, -9.447369381470e-01, 7.413130155797e-06, 4.3070e+01, 6.5937e-01, + 1DIAGNOSTIC, 61, -9.447911620991e-01, 6.875587875189e-06, 4.3716e+01, 6.4660e-01, + 1DIAGNOSTIC, 62, -9.448431723401e-01, 6.420641509797e-06, 4.4360e+01, 6.4389e-01, + 1DIAGNOSTIC, 63, -9.448934131456e-01, 6.029386287333e-06, 4.5004e+01, 6.4390e-01, + 1DIAGNOSTIC, 64, -9.449419811103e-01, 5.705236043853e-06, 4.5669e+01, 6.6545e-01, + 1DIAGNOSTIC, 65, -9.449885034290e-01, 5.438131205269e-06, 4.6349e+01, 6.7976e-01, + 1DIAGNOSTIC, 66, -9.450229378107e-01, 5.169955272510e-06, 4.7028e+01, 6.7873e-01, + 1DIAGNOSTIC, 67, -9.450655020379e-01, 4.941224722298e-06, 4.7701e+01, 6.7287e-01, + 1DIAGNOSTIC, 68, -9.451056702282e-01, 4.700488576672e-06, 4.8366e+01, 6.6505e-01, + 1DIAGNOSTIC, 69, -9.451447304835e-01, 4.448979930774e-06, 4.9034e+01, 6.6820e-01, + 1DIAGNOSTIC, 70, -9.451811268815e-01, 4.207318637194e-06, 4.9705e+01, 6.7107e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.847977577031e-01, 1.797693134862e+308, 5.5340e+01, 5.6345e+00, + 1DIAGNOSTIC, 2, -8.883226189982e-01, 1.797693134862e+308, 6.0662e+01, 5.3220e+00, + 1DIAGNOSTIC, 3, -8.913264177432e-01, 1.797693134862e+308, 6.6033e+01, 5.3717e+00, + 1DIAGNOSTIC, 4, -8.939431317266e-01, 1.797693134862e+308, 7.1398e+01, 5.3649e+00, + 1DIAGNOSTIC, 5, -8.961896165156e-01, 1.797693134862e+308, 7.6778e+01, 5.3800e+00, + 1DIAGNOSTIC, 6, -8.981469316190e-01, 1.797693134862e+308, 8.2135e+01, 5.3568e+00, + 1DIAGNOSTIC, 7, -8.999000377964e-01, 1.797693134862e+308, 8.7514e+01, 5.3792e+00, + 1DIAGNOSTIC, 8, -9.014999882966e-01, 1.797693134862e+308, 9.2890e+01, 5.3763e+00, + 1DIAGNOSTIC, 9, -9.029933506386e-01, 1.797693134862e+308, 9.8270e+01, 5.3793e+00, + 1DIAGNOSTIC, 10, -9.042733471057e-01, 1.352314725960e-03, 1.0361e+02, 5.3379e+00, + 1DIAGNOSTIC, 11, -9.054853507748e-01, 1.085836736197e-03, 1.0899e+02, 5.3781e+00, + 1DIAGNOSTIC, 12, -9.066411910348e-01, 8.890577024395e-04, 1.1436e+02, 5.3746e+00, + 1DIAGNOSTIC, 13, -9.077522647235e-01, 7.416246329930e-04, 1.1971e+02, 5.3456e+00, + 1DIAGNOSTIC, 14, -9.088382197852e-01, 6.308556627248e-04, 1.2507e+02, 5.3591e+00, + 1DIAGNOSTIC, 15, -9.098981082139e-01, 5.463962311310e-04, 1.3046e+02, 5.3970e+00, + 1DIAGNOSTIC, 16, -9.109293582382e-01, 4.809397300033e-04, 1.3585e+02, 5.3879e+00, + 1DIAGNOSTIC, 17, -9.119349653486e-01, 4.297124881465e-04, 1.4128e+02, 5.4340e+00, + 1DIAGNOSTIC, 18, -9.129156910750e-01, 3.893042891266e-04, 1.4664e+02, 5.3602e+00, + 1DIAGNOSTIC, 19, -9.138650685117e-01, 3.572966790037e-04, 1.5205e+02, 5.4084e+00, + 1DIAGNOSTIC, 20, -9.147964864456e-01, 3.298481133069e-04, 1.5743e+02, 5.3798e+00, + 1DIAGNOSTIC, 21, -9.156957105790e-01, 3.056908331120e-04, 1.6282e+02, 5.3912e+00, + 1DIAGNOSTIC, 22, -9.165613202747e-01, 2.838809068884e-04, 1.6829e+02, 5.4667e+00, + 1DIAGNOSTIC, 23, -9.173767056057e-01, 2.635489389278e-04, 1.7367e+02, 5.3760e+00, + 1DIAGNOSTIC, 24, -9.181283500148e-01, 2.440968735484e-04, 1.7903e+02, 5.3589e+00, + 1DIAGNOSTIC, 25, -9.188193576010e-01, 2.251296479504e-04, 1.8440e+02, 5.3762e+00, + 1DIAGNOSTIC, 26, -9.194368353916e-01, 2.062230006315e-04, 1.8981e+02, 5.4107e+00, + 1DIAGNOSTIC, 27, -9.199862008299e-01, 1.872518577394e-04, 1.9523e+02, 5.4177e+00, + 1DIAGNOSTIC, 28, -9.204754327631e-01, 1.683484059081e-04, 2.0058e+02, 5.3543e+00, + 1DIAGNOSTIC, 29, -9.209224616199e-01, 1.498654920416e-04, 2.0595e+02, 5.3641e+00, + 1DIAGNOSTIC, 30, -9.213340543313e-01, 1.324015168386e-04, 2.1132e+02, 5.3711e+00, + 1DIAGNOSTIC, 31, -9.217082672625e-01, 1.163344250249e-04, 2.1671e+02, 5.3877e+00, + 1DIAGNOSTIC, 32, -9.220558701561e-01, 1.020681280002e-04, 2.2207e+02, 5.3644e+00, + 1DIAGNOSTIC, 33, -9.223797292770e-01, 8.975010668940e-05, 2.2747e+02, 5.3980e+00, + 1DIAGNOSTIC, 34, -9.226839727002e-01, 7.931746185216e-05, 2.3283e+02, 5.3625e+00, + 1DIAGNOSTIC, 35, -9.229713260276e-01, 7.066134281629e-05, 2.3822e+02, 5.3880e+00, + 1DIAGNOSTIC, 36, -9.232470715529e-01, 6.350944663710e-05, 2.4357e+02, 5.3480e+00, + 1DIAGNOSTIC, 37, -9.235069934703e-01, 5.753139012786e-05, 2.4893e+02, 5.3614e+00, + 1DIAGNOSTIC, 38, -9.237593504832e-01, 5.248788702798e-05, 2.5432e+02, 5.3951e+00, + 1DIAGNOSTIC, 39, -9.240024930437e-01, 4.823322904505e-05, 2.5971e+02, 5.3905e+00, + 1DIAGNOSTIC, 40, -9.242367398249e-01, 4.464315443172e-05, 2.6509e+02, 5.3715e+00, + 1DIAGNOSTIC, 41, -9.244648284146e-01, 4.156740731188e-05, 2.7047e+02, 5.3860e+00, + 1DIAGNOSTIC, 42, -9.246839756150e-01, 3.889672297163e-05, 2.7583e+02, 5.3572e+00, + 1DIAGNOSTIC, 43, -9.248982888721e-01, 3.655806399193e-05, 2.8123e+02, 5.3988e+00, + 1DIAGNOSTIC, 44, -9.251094650741e-01, 3.450520400674e-05, 2.8661e+02, 5.3849e+00, + 1DIAGNOSTIC, 45, -9.253195520109e-01, 3.271117704908e-05, 2.9205e+02, 5.4364e+00, + 1DIAGNOSTIC, 46, -9.255256881445e-01, 3.115307107877e-05, 2.9746e+02, 5.4122e+00, + 1DIAGNOSTIC, 47, -9.257285921841e-01, 2.977113286743e-05, 3.0283e+02, 5.3683e+00, + 1DIAGNOSTIC, 48, -9.259293571333e-01, 2.856081216030e-05, 3.0820e+02, 5.3661e+00, + 1DIAGNOSTIC, 49, -9.261194363284e-01, 2.744149785805e-05, 3.1361e+02, 5.4180e+00, + 1DIAGNOSTIC, 50, -9.263015060399e-01, 2.635497805637e-05, 3.1903e+02, 5.4135e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.826858891250e-01, 1.797693134862e+308, 3.6318e+02, 4.4149e+01, + 1DIAGNOSTIC, 2, -8.843669163234e-01, 1.797693134862e+308, 4.0736e+02, 4.4181e+01, + 1DIAGNOSTIC, 3, -8.865240032517e-01, 1.797693134862e+308, 4.5272e+02, 4.5362e+01, + 1DIAGNOSTIC, 4, -8.887299380556e-01, 1.797693134862e+308, 4.9756e+02, 4.4841e+01, + 1DIAGNOSTIC, 5, -8.908089183127e-01, 1.797693134862e+308, 5.4294e+02, 4.5375e+01, + 1DIAGNOSTIC, 6, -8.924068017112e-01, 1.797693134862e+308, 5.8781e+02, 4.4870e+01, + 1DIAGNOSTIC, 7, -8.938031635025e-01, 1.797693134862e+308, 6.3294e+02, 4.5132e+01, + 1DIAGNOSTIC, 8, -8.950192542217e-01, 1.797693134862e+308, 6.7808e+02, 4.5140e+01, + 1DIAGNOSTIC, 9, -8.961072350884e-01, 1.797693134862e+308, 7.2199e+02, 4.3913e+01, + 1DIAGNOSTIC, 10, -8.970664289674e-01, 1.063570771776e-03, 7.6570e+02, 4.3710e+01, + 1DIAGNOSTIC, 11, -8.979454379404e-01, 8.772074624803e-04, 8.0943e+02, 4.3729e+01, + 1DIAGNOSTIC, 12, -8.987588918626e-01, 7.091177676746e-04, 8.5307e+02, 4.3636e+01, + 1DIAGNOSTIC, 13, -8.995042749694e-01, 5.734203780537e-04, 8.9712e+02, 4.4055e+01, + 1DIAGNOSTIC, 14, -9.002053750422e-01, 4.705307746494e-04, 9.4069e+02, 4.3568e+01, + 1DIAGNOSTIC, 15, -9.008490535580e-01, 3.957974851976e-04, 9.8466e+02, 4.3971e+01, + 1DIAGNOSTIC, 16, -9.013985702410e-01, 3.365087427030e-04, 1.0284e+03, 4.3755e+01, + 1DIAGNOSTIC, 17, -9.018706639538e-01, 2.879576858632e-04, 1.0726e+03, 4.4156e+01, + 1DIAGNOSTIC, 18, -9.022839411179e-01, 2.468133117422e-04, 1.1162e+03, 4.3587e+01, + 1DIAGNOSTIC, 19, -9.026289748009e-01, 2.109731251269e-04, 1.1598e+03, 4.3673e+01, + 1DIAGNOSTIC, 20, -9.029325908484e-01, 1.790803429295e-04, 1.2036e+03, 4.3759e+01, + Elapsed time (stage 2): 1204 + + +Total elapsed time: 1253 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:28 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:28 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:31 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:36 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:39 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:39 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18625 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:40 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:44 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18698 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:44 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:47 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:47 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18753 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:47 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18758 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:47 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:00 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:03 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:03 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:04 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:05 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:08 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:08 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:09 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:10 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:13 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:13 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC003 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:13 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:22 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:33 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC003 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:34 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC003 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:34 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC003 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:35 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19403 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:36 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:37 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19451 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:38 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:38 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC003_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 70.667 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/logs/proc_func_18-03-2024-29731.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:45 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC003 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/QC/sub-PNC003_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC003* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 70.717 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC003_ses-03 +========================reprocessing without filter=================== +sub-PNC004_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC004 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC004 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC004 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC004 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:51 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:51 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz is 37.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:21:57 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:24:02 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:24:16 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.43 (mm) at sub-brick 0 +++ Max delta displ in automask = 0.36 (mm) at sub-brick 85 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:36:42 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:37:00 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz is 37.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:39:10 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:41:21 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz is 37.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:43:34 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.033 -1.695 2.905 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 76.5 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = 0.400 -2.540 4.722 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 78.5 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:48:34 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:49:04 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55fbc177da50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 60.6235, -116.886] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fbc15f4730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55fbc1794350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55fbc1784600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [77.8093, 122.5, -131.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fbc1786e40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55fbc1f90f50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55fbc1f8f270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 60.6235, -116.886] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fbc1783640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55fbc2abb1c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55fbc1f8ea00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [77.8093, 122.5, -131.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fbc178a450) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55fbc32b5300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.631761559523e-01, 1.797693134862e+308, 4.1920e-02, 4.1920e-02, + 2DIAGNOSTIC, 2, -7.666532897479e-01, 1.797693134862e+308, 4.3179e-02, 1.2589e-03, + 2DIAGNOSTIC, 3, -7.739099978454e-01, 1.797693134862e+308, 4.4490e-02, 1.3108e-03, + 2DIAGNOSTIC, 4, -7.812761127030e-01, 1.797693134862e+308, 4.5694e-02, 1.2040e-03, + 2DIAGNOSTIC, 5, -7.856671015546e-01, 1.797693134862e+308, 4.6945e-02, 1.2510e-03, + 2DIAGNOSTIC, 6, -7.890342187581e-01, 1.797693134862e+308, 4.8143e-02, 1.1981e-03, + 2DIAGNOSTIC, 7, -7.997833974256e-01, 1.797693134862e+308, 4.9410e-02, 1.2670e-03, + 2DIAGNOSTIC, 8, -8.495978889559e-01, 1.797693134862e+308, 5.0744e-02, 1.3340e-03, + 2DIAGNOSTIC, 9, -9.009662694862e-01, 1.797693134862e+308, 5.2998e-02, 2.2540e-03, + 2DIAGNOSTIC, 10, -9.125549592177e-01, 1.151669813731e-02, 5.4421e-02, 1.4231e-03, + 2DIAGNOSTIC, 11, -9.235994634898e-01, 1.237284537598e-02, 5.6042e-02, 1.6210e-03, + 2DIAGNOSTIC, 12, -9.295974540535e-01, 1.224185251850e-02, 5.7768e-02, 1.7262e-03, + 2DIAGNOSTIC, 13, -9.314679437529e-01, 1.124725568828e-02, 5.9204e-02, 1.4360e-03, + 2DIAGNOSTIC, 14, -9.330519033014e-01, 9.589985853466e-03, 6.1245e-02, 2.0411e-03, + 2DIAGNOSTIC, 15, -9.354552014023e-01, 7.466209757819e-03, 6.2892e-02, 1.6470e-03, + 2DIAGNOSTIC, 16, -9.377294150879e-01, 5.085840760121e-03, 6.4529e-02, 1.6370e-03, + 2DIAGNOSTIC, 17, -9.403742219947e-01, 2.788920744019e-03, 6.5922e-02, 1.3931e-03, + 2DIAGNOSTIC, 18, -9.415116776482e-01, 1.419089726643e-03, 6.7557e-02, 1.6351e-03, + 2DIAGNOSTIC, 19, -9.417592169324e-01, 9.597360215640e-04, 6.9141e-02, 1.5841e-03, + 2DIAGNOSTIC, 20, -9.417732993305e-01, 6.463282488060e-04, 7.0558e-02, 1.4169e-03, + 2DIAGNOSTIC, 21, -9.417850259600e-01, 4.732554102232e-04, 7.1998e-02, 1.4400e-03, + 2DIAGNOSTIC, 22, -9.418136245602e-01, 3.608723630811e-04, 7.3413e-02, 1.4150e-03, + 2DIAGNOSTIC, 23, -9.418565767324e-01, 2.520427102718e-04, 7.8730e-02, 5.3170e-03, + 2DIAGNOSTIC, 24, -9.418565753627e-01, 1.505266079661e-04, 8.3760e-02, 5.0299e-03, + 2DIAGNOSTIC, 25, -9.418565753626e-01, 7.425415836558e-05, 8.6710e-02, 2.9500e-03, + 2DIAGNOSTIC, 26, -9.418565753626e-01, 2.458742027808e-05, 8.8247e-02, 1.5371e-03, + 2DIAGNOSTIC, 27, -9.418565753626e-01, 7.489409270853e-06, 8.9739e-02, 1.4920e-03, + 2DIAGNOSTIC, 28, -9.418565753626e-01, 3.929157241470e-06, 9.1474e-02, 1.7350e-03, + 2DIAGNOSTIC, 29, -9.418565753626e-01, 3.080807654703e-06, 9.2982e-02, 1.5080e-03, + 2DIAGNOSTIC, 30, -9.418565753626e-01, 2.266321435830e-06, 9.4859e-02, 1.8771e-03, + 2DIAGNOSTIC, 31, -9.418565753626e-01, 1.514664365092e-06, 9.6327e-02, 1.4679e-03, + 2DIAGNOSTIC, 32, -9.418565753626e-01, 1.040960631193e-06, 9.7832e-02, 1.5049e-03, + 2DIAGNOSTIC, 33, -9.418565753626e-01, 1.007987928514e-06, 9.9149e-02, 1.3170e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.403526992493e-01, 1.797693134862e+308, 1.4208e-01, 4.2933e-02, + 2DIAGNOSTIC, 2, -5.407929005612e-01, 1.797693134862e+308, 1.4432e-01, 2.2349e-03, + 2DIAGNOSTIC, 3, -5.426148634562e-01, 1.797693134862e+308, 1.4664e-01, 2.3241e-03, + 2DIAGNOSTIC, 4, -5.449550043628e-01, 1.797693134862e+308, 1.4919e-01, 2.5449e-03, + 2DIAGNOSTIC, 5, -5.474913513273e-01, 1.797693134862e+308, 1.5146e-01, 2.2759e-03, + 2DIAGNOSTIC, 6, -5.502832718198e-01, 1.797693134862e+308, 1.5427e-01, 2.8050e-03, + 2DIAGNOSTIC, 7, -5.541006734090e-01, 1.797693134862e+308, 1.5621e-01, 1.9481e-03, + 2DIAGNOSTIC, 8, -5.636165144896e-01, 1.797693134862e+308, 1.5818e-01, 1.9698e-03, + 2DIAGNOSTIC, 9, -5.775678092433e-01, 1.797693134862e+308, 1.6032e-01, 2.1389e-03, + 2DIAGNOSTIC, 10, -6.077277786164e-01, 6.074498649410e-03, 1.6304e-01, 2.7139e-03, + 2DIAGNOSTIC, 11, -6.473364700853e-01, 8.893734958007e-03, 1.6567e-01, 2.6360e-03, + 2DIAGNOSTIC, 12, -6.627869340669e-01, 1.100045513597e-02, 1.6849e-01, 2.8179e-03, + 2DIAGNOSTIC, 13, -6.678713106987e-01, 1.201947686581e-02, 1.7142e-01, 2.9252e-03, + 2DIAGNOSTIC, 14, -6.708794473140e-01, 1.198481732268e-02, 1.7422e-01, 2.8059e-03, + 2DIAGNOSTIC, 15, -6.749881948431e-01, 1.106755818397e-02, 1.7769e-01, 3.4711e-03, + 2DIAGNOSTIC, 16, -6.776708620172e-01, 9.415717902177e-03, 1.8182e-01, 4.1270e-03, + 2DIAGNOSTIC, 17, -6.777706413681e-01, 7.230442393274e-03, 1.8496e-01, 3.1431e-03, + 2DIAGNOSTIC, 18, -6.780382776965e-01, 4.921770023507e-03, 1.8751e-01, 2.5489e-03, + 2DIAGNOSTIC, 19, -6.783157125897e-01, 2.773671731423e-03, 1.8989e-01, 2.3730e-03, + 2DIAGNOSTIC, 20, -6.786418640488e-01, 1.289780590474e-03, 1.9223e-01, 2.3410e-03, + 2DIAGNOSTIC, 21, -6.790921790917e-01, 7.114995817805e-04, 1.9578e-01, 3.5532e-03, + 2DIAGNOSTIC, 22, -6.792699913856e-01, 4.491567681920e-04, 1.9891e-01, 3.1290e-03, + 2DIAGNOSTIC, 23, -6.787998166373e-01, 2.617091634513e-04, 2.0135e-01, 2.4452e-03, + 2DIAGNOSTIC, 24, -6.787900933753e-01, 1.224545991319e-04, 2.0374e-01, 2.3849e-03, + 2DIAGNOSTIC, 25, -6.787981641627e-01, 5.707200284377e-05, 2.0647e-01, 2.7261e-03, + 2DIAGNOSTIC, 26, -6.789621031738e-01, 4.113459163576e-05, 2.0884e-01, 2.3751e-03, + 2DIAGNOSTIC, 27, -6.791832791759e-01, 2.797061561148e-05, 2.1151e-01, 2.6729e-03, + 2DIAGNOSTIC, 28, -6.792777190401e-01, 1.921534619385e-05, 2.1381e-01, 2.3010e-03, + 2DIAGNOSTIC, 29, -6.792590864470e-01, 1.346426131837e-05, 2.1644e-01, 2.6250e-03, + 2DIAGNOSTIC, 30, -6.791099583214e-01, 9.394436339828e-06, 2.1966e-01, 3.2179e-03, + 2DIAGNOSTIC, 31, -6.792105888660e-01, 1.262176049904e-05, 2.2392e-01, 4.2601e-03, + 2DIAGNOSTIC, 32, -6.792104791811e-01, 1.706928407980e-05, 2.2619e-01, 2.2759e-03, + 2DIAGNOSTIC, 33, -6.792138876901e-01, 1.342418858127e-05, 2.2846e-01, 2.2659e-03, + 2DIAGNOSTIC, 34, -6.792178758696e-01, 8.853051975413e-06, 2.3101e-01, 2.5530e-03, + 2DIAGNOSTIC, 35, -6.792194687084e-01, 3.955448599637e-06, 2.3337e-01, 2.3611e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.041553259511e-01, 1.797693134862e+308, 3.0021e-01, 6.6840e-02, + 2DIAGNOSTIC, 2, -5.047820198042e-01, 1.797693134862e+308, 3.1047e-01, 1.0255e-02, + 2DIAGNOSTIC, 3, -5.055987022506e-01, 1.797693134862e+308, 3.2148e-01, 1.1011e-02, + 2DIAGNOSTIC, 4, -5.064858526061e-01, 1.797693134862e+308, 3.3184e-01, 1.0364e-02, + 2DIAGNOSTIC, 5, -5.076777198144e-01, 1.797693134862e+308, 3.4324e-01, 1.1400e-02, + 2DIAGNOSTIC, 6, -5.095296040729e-01, 1.797693134862e+308, 3.5471e-01, 1.1465e-02, + 2DIAGNOSTIC, 7, -5.112262941426e-01, 1.797693134862e+308, 3.6612e-01, 1.1407e-02, + 2DIAGNOSTIC, 8, -5.127290762082e-01, 1.797693134862e+308, 3.7745e-01, 1.1336e-02, + 2DIAGNOSTIC, 9, -5.142940623498e-01, 1.797693134862e+308, 3.9076e-01, 1.3312e-02, + 2DIAGNOSTIC, 10, -5.152148303757e-01, 1.504393249423e-03, 4.0487e-01, 1.4102e-02, + 2DIAGNOSTIC, 11, -5.155381910300e-01, 1.385503444319e-03, 4.2397e-01, 1.9109e-02, + 2DIAGNOSTIC, 12, -5.158833206997e-01, 1.207492948163e-03, 4.3574e-01, 1.1768e-02, + 2DIAGNOSTIC, 13, -5.161026901216e-01, 9.923698963533e-04, 4.4769e-01, 1.1947e-02, + 2DIAGNOSTIC, 14, -5.163425469480e-01, 7.625187681981e-04, 4.6064e-01, 1.2951e-02, + 2DIAGNOSTIC, 15, -5.166173369917e-01, 5.474755581511e-04, 4.8180e-01, 2.1161e-02, + 2DIAGNOSTIC, 16, -5.166508331081e-01, 3.744467677833e-04, 4.9346e-01, 1.1657e-02, + 2DIAGNOSTIC, 17, -5.168543910374e-01, 2.493663042629e-04, 5.0464e-01, 1.1180e-02, + 2DIAGNOSTIC, 18, -5.170612518727e-01, 1.670476310905e-04, 5.1522e-01, 1.0577e-02, + 2DIAGNOSTIC, 19, -5.172113772283e-01, 1.274571943954e-04, 5.2555e-01, 1.0334e-02, + 2DIAGNOSTIC, 20, -5.172883510573e-01, 1.076652551874e-04, 5.3752e-01, 1.1973e-02, + 2DIAGNOSTIC, 21, -5.173392797559e-01, 8.969796622050e-05, 5.4832e-01, 1.0802e-02, + 2DIAGNOSTIC, 22, -5.173414087868e-01, 7.385428303103e-05, 5.6746e-01, 1.9137e-02, + 2DIAGNOSTIC, 23, -5.173296732558e-01, 5.747943037206e-05, 5.7934e-01, 1.1876e-02, + 2DIAGNOSTIC, 24, -5.173296998450e-01, 4.260276775251e-05, 5.9270e-01, 1.3364e-02, + 2DIAGNOSTIC, 25, -5.173254000703e-01, 3.109579926455e-05, 6.0347e-01, 1.0766e-02, + 2DIAGNOSTIC, 26, -5.173157247830e-01, 1.813812924704e-05, 6.1436e-01, 1.0896e-02, + 2DIAGNOSTIC, 27, -5.173156305564e-01, 8.663131226917e-06, 6.2705e-01, 1.2688e-02, + 2DIAGNOSTIC, 28, -5.173233142051e-01, 3.349456041968e-06, 6.3749e-01, 1.0440e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.347165447084e-01, 1.797693134862e+308, 8.4596e-01, 2.0847e-01, + Elapsed time (stage 0): 8.6961e-01 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.730029411892e-01, 1.797693134862e+308, 3.5389e-02, 3.5389e-02, + 2DIAGNOSTIC, 2, -9.747078582048e-01, 1.797693134862e+308, 3.6872e-02, 1.4830e-03, + 2DIAGNOSTIC, 3, -9.762974561025e-01, 1.797693134862e+308, 3.8127e-02, 1.2550e-03, + 2DIAGNOSTIC, 4, -9.777979214654e-01, 1.797693134862e+308, 3.9383e-02, 1.2560e-03, + 2DIAGNOSTIC, 5, -9.827624022289e-01, 1.797693134862e+308, 4.0894e-02, 1.5111e-03, + 2DIAGNOSTIC, 6, -9.896350812227e-01, 1.797693134862e+308, 4.2411e-02, 1.5168e-03, + 2DIAGNOSTIC, 7, -9.892329890354e-01, 1.797693134862e+308, 4.3924e-02, 1.5130e-03, + 2DIAGNOSTIC, 8, -9.881958164403e-01, 1.797693134862e+308, 4.5462e-02, 1.5378e-03, + 2DIAGNOSTIC, 9, -9.884995871844e-01, 1.797693134862e+308, 4.6823e-02, 1.3611e-03, + 2DIAGNOSTIC, 10, -9.885257710954e-01, 1.229221135285e-03, 4.8388e-02, 1.5650e-03, + 2DIAGNOSTIC, 11, -9.924343382321e-01, 1.011271986436e-03, 4.9897e-02, 1.5090e-03, + 2DIAGNOSTIC, 12, -9.936313296443e-01, 8.076856495585e-04, 5.1416e-02, 1.5192e-03, + 2DIAGNOSTIC, 13, -1.008451578388e+00, 9.296397050590e-04, 5.3151e-02, 1.7350e-03, + 2DIAGNOSTIC, 14, -1.012667690383e+00, 1.058381599227e-03, 5.4886e-02, 1.7350e-03, + 2DIAGNOSTIC, 15, -1.024155856836e+00, 1.384123139975e-03, 5.6668e-02, 1.7819e-03, + 2DIAGNOSTIC, 16, -1.024994333425e+00, 1.677445037216e-03, 5.8844e-02, 2.1760e-03, + 2DIAGNOSTIC, 17, -1.025719577693e+00, 1.788736420089e-03, 6.0579e-02, 1.7350e-03, + 2DIAGNOSTIC, 18, -1.027455115050e+00, 1.732805856889e-03, 6.2053e-02, 1.4739e-03, + 2DIAGNOSTIC, 19, -1.029722223734e+00, 1.559159445938e-03, 6.3534e-02, 1.4808e-03, + 2DIAGNOSTIC, 20, -1.032586349874e+00, 1.298356904901e-03, 6.5099e-02, 1.5659e-03, + 2DIAGNOSTIC, 21, -1.035916637850e+00, 1.041911219237e-03, 6.6556e-02, 1.4560e-03, + 2DIAGNOSTIC, 22, -1.040269253580e+00, 7.808588298886e-04, 6.8304e-02, 1.7481e-03, + 2DIAGNOSTIC, 23, -1.039243651165e+00, 6.395478396130e-04, 6.9996e-02, 1.6921e-03, + 2DIAGNOSTIC, 24, -1.044422480295e+00, 5.584111226508e-04, 7.2484e-02, 2.4881e-03, + 2DIAGNOSTIC, 25, -1.046379365310e+00, 5.816856995087e-04, 7.4180e-02, 1.6961e-03, + 2DIAGNOSTIC, 26, -1.047298894699e+00, 5.669982067787e-04, 7.5889e-02, 1.7090e-03, + 2DIAGNOSTIC, 27, -1.048402135311e+00, 5.194852597829e-04, 7.7395e-02, 1.5059e-03, + 2DIAGNOSTIC, 28, -1.051819403407e+00, 4.784303785366e-04, 7.8875e-02, 1.4799e-03, + 2DIAGNOSTIC, 29, -1.056376628252e+00, 4.599149411298e-04, 8.0422e-02, 1.5471e-03, + 2DIAGNOSTIC, 30, -1.064459776126e+00, 4.996063366252e-04, 8.2136e-02, 1.7140e-03, + 2DIAGNOSTIC, 31, -1.069184052064e+00, 5.601939333245e-04, 8.3872e-02, 1.7359e-03, + 2DIAGNOSTIC, 32, -1.072400755997e+00, 6.309034088069e-04, 8.5619e-02, 1.7471e-03, + 2DIAGNOSTIC, 33, -1.071126425475e+00, 6.173051028464e-04, 8.7565e-02, 1.9462e-03, + 2DIAGNOSTIC, 34, -1.074394705481e+00, 6.151700729432e-04, 8.9275e-02, 1.7099e-03, + 2DIAGNOSTIC, 35, -1.077372978258e+00, 5.925094665231e-04, 9.0996e-02, 1.7209e-03, + 2DIAGNOSTIC, 36, -1.082265755434e+00, 5.588609041780e-04, 9.2923e-02, 1.9269e-03, + 2DIAGNOSTIC, 37, -1.085266605743e+00, 5.045416268247e-04, 9.4397e-02, 1.4741e-03, + 2DIAGNOSTIC, 38, -1.086426147062e+00, 4.390585088597e-04, 9.5898e-02, 1.5011e-03, + 2DIAGNOSTIC, 39, -1.087857345832e+00, 3.770441521151e-04, 9.7409e-02, 1.5111e-03, + 2DIAGNOSTIC, 40, -1.089274007555e+00, 3.466675268175e-04, 9.8925e-02, 1.5161e-03, + 2DIAGNOSTIC, 41, -1.090978457994e+00, 3.269166590491e-04, 1.0084e-01, 1.9150e-03, + 2DIAGNOSTIC, 42, -1.089571233195e+00, 2.891860402658e-04, 1.0256e-01, 1.7159e-03, + 2DIAGNOSTIC, 43, -1.089123972427e+00, 2.152437878708e-04, 1.0406e-01, 1.5049e-03, + 2DIAGNOSTIC, 44, -1.088774145947e+00, 1.426100543360e-04, 1.0584e-01, 1.7769e-03, + 2DIAGNOSTIC, 45, -1.090491531369e+00, 8.752554970029e-05, 1.0833e-01, 2.4970e-03, + 2DIAGNOSTIC, 46, -1.090568155803e+00, 5.537853079390e-05, 1.0985e-01, 1.5161e-03, + 2DIAGNOSTIC, 47, -1.090973688719e+00, 3.946223704207e-05, 1.1142e-01, 1.5681e-03, + 2DIAGNOSTIC, 48, -1.091653617301e+00, 3.119044223830e-05, 1.1302e-01, 1.6022e-03, + 2DIAGNOSTIC, 49, -1.091886389695e+00, 2.930303304349e-05, 1.1456e-01, 1.5390e-03, + 2DIAGNOSTIC, 50, -1.092249492733e+00, 3.394137159534e-05, 1.1658e-01, 2.0149e-03, + 2DIAGNOSTIC, 51, -1.092395491968e+00, 4.519933133845e-05, 1.1856e-01, 1.9879e-03, + 2DIAGNOSTIC, 52, -1.092491529402e+00, 4.504151019533e-05, 1.2042e-01, 1.8599e-03, + 2DIAGNOSTIC, 53, -1.092673352215e+00, 3.938982603623e-05, 1.2231e-01, 1.8859e-03, + 2DIAGNOSTIC, 54, -1.091799295074e+00, 2.382992771285e-05, 1.2418e-01, 1.8730e-03, + 2DIAGNOSTIC, 55, -1.091909532334e+00, 1.581606600223e-05, 1.2618e-01, 2.0001e-03, + 2DIAGNOSTIC, 56, -1.091966200863e+00, 7.214416947957e-06, 1.2815e-01, 1.9689e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.494149121303e-01, 1.797693134862e+308, 1.7410e-01, 4.5946e-02, + 2DIAGNOSTIC, 2, -7.495778865920e-01, 1.797693134862e+308, 1.7767e-01, 3.5729e-03, + 2DIAGNOSTIC, 3, -7.507111822389e-01, 1.797693134862e+308, 1.8098e-01, 3.3140e-03, + 2DIAGNOSTIC, 4, -7.527529157855e-01, 1.797693134862e+308, 1.8369e-01, 2.7070e-03, + 2DIAGNOSTIC, 5, -7.546940214631e-01, 1.797693134862e+308, 1.8608e-01, 2.3868e-03, + 2DIAGNOSTIC, 6, -7.568211015108e-01, 1.797693134862e+308, 1.8918e-01, 3.0992e-03, + 2DIAGNOSTIC, 7, -7.592939042267e-01, 1.797693134862e+308, 1.9368e-01, 4.5068e-03, + 2DIAGNOSTIC, 8, -7.593221446702e-01, 1.797693134862e+308, 1.9603e-01, 2.3499e-03, + 2DIAGNOSTIC, 9, -7.594045471935e-01, 1.797693134862e+308, 1.9845e-01, 2.4140e-03, + 2DIAGNOSTIC, 10, -7.594779185704e-01, 1.060712362772e-03, 2.0118e-01, 2.7361e-03, + 2DIAGNOSTIC, 11, -7.596787849048e-01, 8.577685451222e-04, 2.0384e-01, 2.6531e-03, + 2DIAGNOSTIC, 12, -7.599653208232e-01, 6.253405447364e-04, 2.0637e-01, 2.5349e-03, + 2DIAGNOSTIC, 13, -7.604518014631e-01, 4.190162520059e-04, 2.0904e-01, 2.6648e-03, + 2DIAGNOSTIC, 14, -7.609673752319e-01, 2.731390412521e-04, 2.1186e-01, 2.8191e-03, + 2DIAGNOSTIC, 15, -7.613338024968e-01, 1.789241959651e-04, 2.1485e-01, 2.9991e-03, + 2DIAGNOSTIC, 16, -7.616099915280e-01, 1.350695117824e-04, 2.1814e-01, 3.2890e-03, + 2DIAGNOSTIC, 17, -7.617362837436e-01, 1.414942736861e-04, 2.2660e-01, 8.4541e-03, + 2DIAGNOSTIC, 18, -7.617362806054e-01, 1.348182869679e-04, 2.2919e-01, 2.5890e-03, + 2DIAGNOSTIC, 19, -7.617363124710e-01, 1.181327351530e-04, 2.3177e-01, 2.5830e-03, + 2DIAGNOSTIC, 20, -7.617363663397e-01, 9.365405039178e-05, 2.3437e-01, 2.5990e-03, + 2DIAGNOSTIC, 21, -7.617364573858e-01, 6.652202364461e-05, 2.3695e-01, 2.5768e-03, + 2DIAGNOSTIC, 22, -7.617366112140e-01, 4.059868860866e-05, 2.3951e-01, 2.5659e-03, + 2DIAGNOSTIC, 23, -7.617368709659e-01, 2.110233819586e-05, 2.4210e-01, 2.5930e-03, + 2DIAGNOSTIC, 24, -7.617373091493e-01, 9.363417225530e-06, 2.4487e-01, 2.7690e-03, + 2DIAGNOSTIC, 25, -7.617380472797e-01, 3.217622996175e-06, 2.4758e-01, 2.7039e-03, + 2DIAGNOSTIC, 26, -7.617392892335e-01, 1.307295430672e-06, 2.5013e-01, 2.5499e-03, + 2DIAGNOSTIC, 27, -7.617413650908e-01, 1.311348785719e-06, 2.5270e-01, 2.5702e-03, + 2DIAGNOSTIC, 28, -7.617448068886e-01, 1.348411551944e-06, 2.5529e-01, 2.5909e-03, + 2DIAGNOSTIC, 29, -7.618088063061e-01, 2.188897128406e-06, 2.5783e-01, 2.5432e-03, + 2DIAGNOSTIC, 30, -7.618180099559e-01, 2.963678531004e-06, 2.6037e-01, 2.5408e-03, + 2DIAGNOSTIC, 31, -7.618322130212e-01, 3.687541700471e-06, 2.6300e-01, 2.6238e-03, + 2DIAGNOSTIC, 32, -7.617945973874e-01, 3.684349250958e-06, 2.6613e-01, 3.1309e-03, + 2DIAGNOSTIC, 33, -7.618056332854e-01, 3.567101365225e-06, 2.6923e-01, 3.1021e-03, + 2DIAGNOSTIC, 34, -7.617570377726e-01, 2.662005964722e-06, 2.7183e-01, 2.6009e-03, + 2DIAGNOSTIC, 35, -7.617714721511e-01, 1.812569440741e-06, 2.7445e-01, 2.6240e-03, + 2DIAGNOSTIC, 36, -7.618500651242e-01, 1.755088029947e-06, 2.7704e-01, 2.5909e-03, + 2DIAGNOSTIC, 37, -7.618768457797e-01, 1.894537083772e-06, 2.7951e-01, 2.4660e-03, + 2DIAGNOSTIC, 38, -7.619076470640e-01, 2.256097476831e-06, 2.8218e-01, 2.6679e-03, + 2DIAGNOSTIC, 39, -7.618854505236e-01, 2.872041384945e-06, 2.8456e-01, 2.3849e-03, + 2DIAGNOSTIC, 40, -7.619497921038e-01, 3.952567290830e-06, 2.8691e-01, 2.3420e-03, + 2DIAGNOSTIC, 41, -7.621028814352e-01, 6.180609313119e-06, 2.8929e-01, 2.3839e-03, + 2DIAGNOSTIC, 42, -7.624681522900e-01, 1.065438304295e-05, 2.9168e-01, 2.3880e-03, + 2DIAGNOSTIC, 43, -7.636420157949e-01, 2.423035719187e-05, 2.9453e-01, 2.8532e-03, + 2DIAGNOSTIC, 44, -7.648236264970e-01, 4.434786774492e-05, 2.9722e-01, 2.6891e-03, + 2DIAGNOSTIC, 45, -7.654236856425e-01, 6.435859278316e-05, 3.0087e-01, 3.6519e-03, + 2DIAGNOSTIC, 46, -7.657025396302e-01, 8.039879327504e-05, 3.0333e-01, 2.4579e-03, + 2DIAGNOSTIC, 47, -7.660770221551e-01, 9.136940575696e-05, 3.0571e-01, 2.3830e-03, + 2DIAGNOSTIC, 48, -7.663564395716e-01, 9.545878005675e-05, 3.0834e-01, 2.6250e-03, + 2DIAGNOSTIC, 49, -7.665869775077e-01, 9.173694682981e-05, 3.1143e-01, 3.0901e-03, + 2DIAGNOSTIC, 50, -7.670597153722e-01, 8.349391639205e-05, 3.1455e-01, 3.1228e-03, + 2DIAGNOSTIC, 51, -7.680214065948e-01, 7.585430316594e-05, 3.1796e-01, 3.4080e-03, + 2DIAGNOSTIC, 52, -7.686183361708e-01, 6.794372827888e-05, 3.2180e-01, 3.8400e-03, + 2DIAGNOSTIC, 53, -7.686111530390e-01, 6.190195134628e-05, 3.2424e-01, 2.4400e-03, + 2DIAGNOSTIC, 54, -7.693796746464e-01, 6.373843514346e-05, 3.2693e-01, 2.6960e-03, + 2DIAGNOSTIC, 55, -7.705504078272e-01, 7.129471923844e-05, 3.2933e-01, 2.3949e-03, + 2DIAGNOSTIC, 56, -7.706590066993e-01, 7.404618206841e-05, 3.3235e-01, 3.0229e-03, + 2DIAGNOSTIC, 57, -7.705744249736e-01, 7.161866970855e-05, 3.3509e-01, 2.7380e-03, + 2DIAGNOSTIC, 58, -7.706327878368e-01, 6.482767135016e-05, 3.3743e-01, 2.3401e-03, + 2DIAGNOSTIC, 59, -7.707104827888e-01, 5.397158416550e-05, 3.4010e-01, 2.6720e-03, + 2DIAGNOSTIC, 60, -7.707448738476e-01, 4.120545089831e-05, 3.4278e-01, 2.6791e-03, + 2DIAGNOSTIC, 61, -7.706638124680e-01, 3.027146546663e-05, 3.4514e-01, 2.3630e-03, + 2DIAGNOSTIC, 62, -7.706539302228e-01, 2.056059670394e-05, 3.4781e-01, 2.6622e-03, + 2DIAGNOSTIC, 63, -7.706923879516e-01, 9.374258621523e-06, 3.5025e-01, 2.4469e-03, + 2DIAGNOSTIC, 64, -7.706340713623e-01, 1.601098882809e-06, 3.5268e-01, 2.4250e-03, + 2DIAGNOSTIC, 65, -7.707056385487e-01, 1.071814489537e-06, 3.5539e-01, 2.7101e-03, + 2DIAGNOSTIC, 66, -7.707605084988e-01, 1.445454345141e-06, 3.5906e-01, 3.6740e-03, + 2DIAGNOSTIC, 67, -7.708764816009e-01, 1.881508798738e-06, 3.6179e-01, 2.7230e-03, + 2DIAGNOSTIC, 68, -7.708337053695e-01, 2.227384205203e-06, 3.6457e-01, 2.7812e-03, + 2DIAGNOSTIC, 69, -7.709278391243e-01, 3.331470349076e-06, 3.6700e-01, 2.4321e-03, + 2DIAGNOSTIC, 70, -7.709463119997e-01, 4.410186181348e-06, 3.6969e-01, 2.6879e-03, + 2DIAGNOSTIC, 71, -7.710329030827e-01, 5.096067181368e-06, 3.7213e-01, 2.4412e-03, + 2DIAGNOSTIC, 72, -7.710536848023e-01, 5.353809658047e-06, 3.7455e-01, 2.4219e-03, + 2DIAGNOSTIC, 73, -7.715492692470e-01, 7.873410015851e-06, 3.7757e-01, 3.0160e-03, + 2DIAGNOSTIC, 74, -7.722636547380e-01, 1.283672190677e-05, 3.8029e-01, 2.7199e-03, + 2DIAGNOSTIC, 75, -7.726618556303e-01, 1.871951548061e-05, 3.8296e-01, 2.6789e-03, + 2DIAGNOSTIC, 76, -7.728925218434e-01, 2.408417761234e-05, 3.8564e-01, 2.6731e-03, + 2DIAGNOSTIC, 77, -7.729304060190e-01, 2.781492719324e-05, 3.8832e-01, 2.6789e-03, + 2DIAGNOSTIC, 78, -7.730477550660e-01, 2.914006320875e-05, 3.9106e-01, 2.7471e-03, + 2DIAGNOSTIC, 79, -7.732392224916e-01, 2.893641997482e-05, 3.9458e-01, 3.5160e-03, + 2DIAGNOSTIC, 80, -7.732030954063e-01, 2.586406471358e-05, 3.9772e-01, 3.1362e-03, + 2DIAGNOSTIC, 81, -7.733800438286e-01, 2.169468150727e-05, 4.0082e-01, 3.1018e-03, + 2DIAGNOSTIC, 82, -7.733364044563e-01, 1.545148431853e-05, 4.0363e-01, 2.8088e-03, + 2DIAGNOSTIC, 83, -7.733332732869e-01, 1.005579938913e-05, 4.0613e-01, 2.5051e-03, + 2DIAGNOSTIC, 84, -7.733356665033e-01, 6.984935625119e-06, 4.0897e-01, 2.8372e-03, + 2DIAGNOSTIC, 85, -7.733666628849e-01, 5.198791467877e-06, 4.1147e-01, 2.5010e-03, + 2DIAGNOSTIC, 86, -7.733458084402e-01, 3.894014490125e-06, 4.1467e-01, 3.2051e-03, + 2DIAGNOSTIC, 87, -7.732521493713e-01, 2.038813821300e-06, 4.1747e-01, 2.7971e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.769847749805e-01, 1.797693134862e+308, 4.8528e-01, 6.7811e-02, + 2DIAGNOSTIC, 2, -5.773090972534e-01, 1.797693134862e+308, 4.9948e-01, 1.4194e-02, + 2DIAGNOSTIC, 3, -5.777220993439e-01, 1.797693134862e+308, 5.1140e-01, 1.1926e-02, + 2DIAGNOSTIC, 4, -5.783215705320e-01, 1.797693134862e+308, 5.2654e-01, 1.5137e-02, + 2DIAGNOSTIC, 5, -5.790170405078e-01, 1.797693134862e+308, 5.3948e-01, 1.2938e-02, + 2DIAGNOSTIC, 6, -5.796314873574e-01, 1.797693134862e+308, 5.5667e-01, 1.7196e-02, + 2DIAGNOSTIC, 7, -5.798326555016e-01, 1.797693134862e+308, 5.7086e-01, 1.4188e-02, + 2DIAGNOSTIC, 8, -5.798349370357e-01, 1.797693134862e+308, 5.8474e-01, 1.3879e-02, + 2DIAGNOSTIC, 9, -5.798614285667e-01, 1.797693134862e+308, 5.9708e-01, 1.2335e-02, + 2DIAGNOSTIC, 10, -5.798821791860e-01, 3.673841730322e-04, 6.1185e-01, 1.4776e-02, + 2DIAGNOSTIC, 11, -5.798955596143e-01, 2.693174806739e-04, 6.2937e-01, 1.7523e-02, + 2DIAGNOSTIC, 12, -5.799028096511e-01, 1.773513038504e-04, 6.4512e-01, 1.5741e-02, + 2DIAGNOSTIC, 13, -5.799032666867e-01, 9.941466124486e-05, 6.6335e-01, 1.8232e-02, + 2DIAGNOSTIC, 14, -5.799010404206e-01, 4.442260107483e-05, 6.7758e-01, 1.4233e-02, + 2DIAGNOSTIC, 15, -5.799017802359e-01, 1.519350072041e-05, 6.9222e-01, 1.4636e-02, + 2DIAGNOSTIC, 16, -5.799012388016e-01, 7.075815317240e-06, 7.0679e-01, 1.4574e-02, + 2DIAGNOSTIC, 17, -5.798974287263e-01, 5.153644196051e-06, 7.2089e-01, 1.4099e-02, + 2DIAGNOSTIC, 18, -5.799041256983e-01, 3.381389899464e-06, 7.3358e-01, 1.2689e-02, + 2DIAGNOSTIC, 19, -5.799050716317e-01, 2.341238065244e-06, 7.4761e-01, 1.4028e-02, + 2DIAGNOSTIC, 20, -5.799090844517e-01, 1.943403564429e-06, 7.6112e-01, 1.3515e-02, + 2DIAGNOSTIC, 21, -5.799190913442e-01, 2.092077215576e-06, 7.7534e-01, 1.4220e-02, + 2DIAGNOSTIC, 22, -5.799213892978e-01, 2.381659757932e-06, 7.8801e-01, 1.2665e-02, + 2DIAGNOSTIC, 23, -5.799297640157e-01, 2.748689436158e-06, 8.0042e-01, 1.2413e-02, + 2DIAGNOSTIC, 24, -5.799793754420e-01, 3.921543983210e-06, 8.1327e-01, 1.2851e-02, + 2DIAGNOSTIC, 25, -5.800341273316e-01, 5.819683479506e-06, 8.2645e-01, 1.3178e-02, + 2DIAGNOSTIC, 26, -5.801622967175e-01, 9.535904814457e-06, 8.4171e-01, 1.5259e-02, + 2DIAGNOSTIC, 27, -5.803552823840e-01, 1.558547186518e-05, 8.5747e-01, 1.5760e-02, + 2DIAGNOSTIC, 28, -5.804356703052e-01, 2.131194976975e-05, 8.7440e-01, 1.6933e-02, + 2DIAGNOSTIC, 29, -5.804445754363e-01, 2.492257006162e-05, 8.8919e-01, 1.4787e-02, + 2DIAGNOSTIC, 30, -5.804809072855e-01, 2.673391515478e-05, 9.0426e-01, 1.5074e-02, + 2DIAGNOSTIC, 31, -5.805131197736e-01, 2.663630568839e-05, 9.2129e-01, 1.7032e-02, + 2DIAGNOSTIC, 32, -5.805181374560e-01, 2.418243959591e-05, 9.3554e-01, 1.4249e-02, + 2DIAGNOSTIC, 33, -5.805152313424e-01, 1.976026512382e-05, 9.5056e-01, 1.5020e-02, + 2DIAGNOSTIC, 34, -5.805152871237e-01, 1.457658332527e-05, 9.6484e-01, 1.4281e-02, + 2DIAGNOSTIC, 35, -5.805122707764e-01, 9.107470295672e-06, 9.7949e-01, 1.4643e-02, + 2DIAGNOSTIC, 36, -5.805092382845e-01, 4.797836577468e-06, 9.9255e-01, 1.3063e-02, + 2DIAGNOSTIC, 37, -5.805062058712e-01, 2.842414619030e-06, 1.0049e+00, 1.2398e-02, + 2DIAGNOSTIC, 38, -5.805032029378e-01, 1.809044279530e-06, 1.0174e+00, 1.2465e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.759293184383e-01, 1.797693134862e+308, 1.2434e+00, 2.2598e-01, + Elapsed time (stage 1): 1.2648e+00 + + +Total elapsed time: 2.1349e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:49:08 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 47 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 77 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 88.00% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 88.00% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[ 9154 2753 7599 7320 29273 7183 12969 410 255 1134 10425 211 + 0 0 924 0 257 595 0 648 0 665 382 0 + 0 901 0 0 0 272 261 0 0 0 0 0 + 0 0 0 0 0 0 0 0 0 0 0] +[160751 36231 70434 71812 25251 18124 16878 20475 15818 6668 + 5564 6038 7370 1927 5796 8820 6792 2531 8253 1519 + 5219 2538 1695 1364 1891 1399 1550 1754 2184 1649 + 1177 1267 1503 1563 630 1099 1159 1328 1303 999 + 1281 860 893 960 1158 1008 828] +[ 0 8706 0 420 0 9868 6178 0 25836 0 762 0 + 4067 14044 0 0 0 0 0 9172 0 0 5638 10232 + 0 2004 0 0 0 393 0 0 0 0 8401 0 + 0 6968 0 0 7049 0 0 0 0 0 0] +[ 2113 108116 1231 2117 3772 1638 84295 11926 2591 13810 + 10567 997 91189 1875 3356 3179 966 8594 1166 744 + 445 858 835 575 1951 5802 1094 5491 4551 1258 + 2019 1609 12767 1026 668 5877 1219 109947 3786 1062 + 2241 4101 3950 6282 1013 1352 855] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:58:12 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:58:19 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:03 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:03 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:03 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:24 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:35 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC004 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:07:13 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:08:13 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:12:16 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:12:18 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:14:22 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:14:24 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5615be062d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.2585, 122.949, -131.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5615bded9730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb7a3533010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5615be066020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.0727, -117.336] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5615be06c0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb79fe74010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5615be07c840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.2585, 122.949, -131.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5615be068890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb79b1a0010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5615be0803e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.0727, -117.336] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5615be06f130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb797ae1010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.538887335099e-01, 1.797693134862e+308, 3.2056e-01, 3.2056e-01, + 2DIAGNOSTIC, 2, -4.547151890938e-01, 1.797693134862e+308, 3.2191e-01, 1.3492e-03, + 2DIAGNOSTIC, 3, -4.571411666759e-01, 1.797693134862e+308, 3.2731e-01, 5.3961e-03, + 2DIAGNOSTIC, 4, -4.597114174792e-01, 1.797693134862e+308, 3.3287e-01, 5.5659e-03, + 2DIAGNOSTIC, 5, -4.684079895525e-01, 1.797693134862e+308, 3.3916e-01, 6.2881e-03, + 2DIAGNOSTIC, 6, -4.807115613134e-01, 1.797693134862e+308, 3.4476e-01, 5.5962e-03, + 2DIAGNOSTIC, 7, -4.909035909860e-01, 1.797693134862e+308, 3.4797e-01, 3.2110e-03, + 2DIAGNOSTIC, 8, -5.235478231521e-01, 1.797693134862e+308, 3.5675e-01, 8.7800e-03, + 2DIAGNOSTIC, 9, -5.238246197353e-01, 1.797693134862e+308, 3.5993e-01, 3.1841e-03, + 2DIAGNOSTIC, 10, -5.274624432896e-01, 1.158052901661e-02, 3.6176e-01, 1.8280e-03, + 2DIAGNOSTIC, 11, -5.286163526616e-01, 1.100162650468e-02, 3.6366e-01, 1.8990e-03, + 2DIAGNOSTIC, 12, -5.291628903279e-01, 9.601658518617e-03, 3.6532e-01, 1.6570e-03, + 2DIAGNOSTIC, 13, -5.313092836624e-01, 7.756910283184e-03, 3.6849e-01, 3.1729e-03, + 2DIAGNOSTIC, 14, -5.312950021685e-01, 5.592990017458e-03, 3.7067e-01, 2.1861e-03, + 2DIAGNOSTIC, 15, -5.324479483826e-01, 3.611278940761e-03, 3.7322e-01, 2.5449e-03, + 2DIAGNOSTIC, 16, -5.337119926255e-01, 2.045631973191e-03, 3.7477e-01, 1.5461e-03, + 2DIAGNOSTIC, 17, -5.352476941685e-01, 8.465190394572e-04, 3.7648e-01, 1.7118e-03, + 2DIAGNOSTIC, 18, -5.357900103450e-01, 7.477026920654e-04, 3.7943e-01, 2.9480e-03, + 2DIAGNOSTIC, 19, -5.358456881794e-01, 5.987187224225e-04, 3.8434e-01, 4.9140e-03, + 2DIAGNOSTIC, 20, -5.358460709134e-01, 5.121983299344e-04, 3.8669e-01, 2.3470e-03, + 2DIAGNOSTIC, 21, -5.358704270496e-01, 4.178640941850e-04, 3.8968e-01, 2.9981e-03, + 2DIAGNOSTIC, 22, -5.358852936841e-01, 3.060337933254e-04, 3.9357e-01, 3.8869e-03, + 2DIAGNOSTIC, 23, -5.355410256762e-01, 2.199201692340e-04, 3.9912e-01, 5.5480e-03, + 2DIAGNOSTIC, 24, -5.355573262159e-01, 1.212421853901e-04, 4.0361e-01, 4.4930e-03, + 2DIAGNOSTIC, 25, -5.355707346033e-01, 4.505628253691e-05, 4.0909e-01, 5.4779e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.184820547648e-01, 1.797693134862e+308, 7.3637e-01, 3.2728e-01, + 2DIAGNOSTIC, 2, -4.172928989069e-01, 1.797693134862e+308, 7.4022e-01, 3.8431e-03, + 2DIAGNOSTIC, 3, -4.183352444314e-01, 1.797693134862e+308, 7.4399e-01, 3.7780e-03, + 2DIAGNOSTIC, 4, -4.206345924669e-01, 1.797693134862e+308, 7.4700e-01, 3.0091e-03, + 2DIAGNOSTIC, 5, -4.215624764205e-01, 1.797693134862e+308, 7.5277e-01, 5.7690e-03, + 2DIAGNOSTIC, 6, -4.244144321329e-01, 1.797693134862e+308, 7.5955e-01, 6.7780e-03, + 2DIAGNOSTIC, 7, -4.274525353403e-01, 1.797693134862e+308, 7.7180e-01, 1.2247e-02, + 2DIAGNOSTIC, 8, -4.383260169410e-01, 1.797693134862e+308, 7.8271e-01, 1.0913e-02, + 2DIAGNOSTIC, 9, -4.423961072956e-01, 1.797693134862e+308, 7.8782e-01, 5.1088e-03, + 2DIAGNOSTIC, 10, -4.441653769600e-01, 4.346705432250e-03, 7.9330e-01, 5.4781e-03, + 2DIAGNOSTIC, 11, -4.444561122140e-01, 4.421029815705e-03, 7.9640e-01, 3.1040e-03, + 2DIAGNOSTIC, 12, -4.453461702642e-01, 4.069854931645e-03, 8.0769e-01, 1.1286e-02, + 2DIAGNOSTIC, 13, -4.463509557318e-01, 3.500615394471e-03, 8.2336e-01, 1.5676e-02, + 2DIAGNOSTIC, 14, -4.465292165109e-01, 2.811161202990e-03, 8.3123e-01, 7.8700e-03, + 2DIAGNOSTIC, 15, -4.464305450950e-01, 2.001495028645e-03, 8.4295e-01, 1.1717e-02, + 2DIAGNOSTIC, 16, -4.467323816736e-01, 1.246586762329e-03, 8.5131e-01, 8.3621e-03, + 2DIAGNOSTIC, 17, -4.468953960391e-01, 5.814815319834e-04, 8.5835e-01, 7.0400e-03, + 2DIAGNOSTIC, 18, -4.471875381519e-01, 3.391914129282e-04, 8.7432e-01, 1.5963e-02, + 2DIAGNOSTIC, 19, -4.476144993179e-01, 2.445860556823e-04, 8.9650e-01, 2.2181e-02, + 2DIAGNOSTIC, 20, -4.482035453602e-01, 2.142324449496e-04, 9.3152e-01, 3.5020e-02, + 2DIAGNOSTIC, 21, -4.486218830224e-01, 1.882814661344e-04, 9.4950e-01, 1.7985e-02, + 2DIAGNOSTIC, 22, -4.486361472437e-01, 1.730850295851e-04, 9.5193e-01, 2.4252e-03, + 2DIAGNOSTIC, 23, -4.487561398535e-01, 1.750592281771e-04, 9.5457e-01, 2.6469e-03, + 2DIAGNOSTIC, 24, -4.495131409394e-01, 1.858827046127e-04, 9.5685e-01, 2.2759e-03, + 2DIAGNOSTIC, 25, -4.503162022329e-01, 1.958145822493e-04, 9.6020e-01, 3.3541e-03, + 2DIAGNOSTIC, 26, -4.503915589778e-01, 1.956779025798e-04, 9.6254e-01, 2.3401e-03, + 2DIAGNOSTIC, 27, -4.509339197450e-01, 1.946853516494e-04, 9.6591e-01, 3.3700e-03, + 2DIAGNOSTIC, 28, -4.515800885126e-01, 1.970274231694e-04, 9.6865e-01, 2.7390e-03, + 2DIAGNOSTIC, 29, -4.515691627147e-01, 1.891103620606e-04, 9.7110e-01, 2.4452e-03, + 2DIAGNOSTIC, 30, -4.514218762402e-01, 1.732505205410e-04, 9.7389e-01, 2.7881e-03, + 2DIAGNOSTIC, 31, -4.515073104050e-01, 1.530568864461e-04, 9.9898e-01, 2.5095e-02, + 2DIAGNOSTIC, 32, -4.515528498403e-01, 1.210105619253e-04, 1.0037e+00, 4.7202e-03, + 2DIAGNOSTIC, 33, -4.517616198830e-01, 8.546007659880e-05, 1.0174e+00, 1.3657e-02, + 2DIAGNOSTIC, 34, -4.518722642172e-01, 6.005807972365e-05, 1.0268e+00, 9.4869e-03, + 2DIAGNOSTIC, 35, -4.521290988689e-01, 5.027477346174e-05, 1.0399e+00, 1.3046e-02, + 2DIAGNOSTIC, 36, -4.524254399128e-01, 4.277069021371e-05, 1.0553e+00, 1.5457e-02, + 2DIAGNOSTIC, 37, -4.523915147331e-01, 4.004755640821e-05, 1.0631e+00, 7.7760e-03, + 2DIAGNOSTIC, 38, -4.524439705898e-01, 4.559759629396e-05, 1.0719e+00, 8.7659e-03, + 2DIAGNOSTIC, 39, -4.526174893024e-01, 4.935138956632e-05, 1.0778e+00, 5.8930e-03, + 2DIAGNOSTIC, 40, -4.528969755683e-01, 5.025529780565e-05, 1.0838e+00, 6.0248e-03, + 2DIAGNOSTIC, 41, -4.529867342007e-01, 4.900856651786e-05, 1.0881e+00, 4.3321e-03, + 2DIAGNOSTIC, 42, -4.531821967251e-01, 4.692572582621e-05, 1.0907e+00, 2.5601e-03, + 2DIAGNOSTIC, 43, -4.532452888352e-01, 4.462510077113e-05, 1.0931e+00, 2.3899e-03, + 2DIAGNOSTIC, 44, -4.533039159848e-01, 4.060210443334e-05, 1.0954e+00, 2.2862e-03, + 2DIAGNOSTIC, 45, -4.535154925135e-01, 3.943345647728e-05, 1.0976e+00, 2.2600e-03, + 2DIAGNOSTIC, 46, -4.540091361995e-01, 4.553008017844e-05, 1.0996e+00, 2.0020e-03, + 2DIAGNOSTIC, 47, -4.543607050154e-01, 5.125692060350e-05, 1.1127e+00, 1.3038e-02, + 2DIAGNOSTIC, 48, -4.545638611508e-01, 5.525731534434e-05, 1.1233e+00, 1.0634e-02, + 2DIAGNOSTIC, 49, -4.545452934432e-01, 5.588845964869e-05, 1.1443e+00, 2.0942e-02, + 2DIAGNOSTIC, 50, -4.545064739978e-01, 5.431862302029e-05, 1.1566e+00, 1.2298e-02, + 2DIAGNOSTIC, 51, -4.547621030787e-01, 5.185318255949e-05, 1.1666e+00, 1.0081e-02, + 2DIAGNOSTIC, 52, -4.553695031918e-01, 5.422725584185e-05, 1.1783e+00, 1.1693e-02, + 2DIAGNOSTIC, 53, -4.557020012440e-01, 5.598913408360e-05, 1.1876e+00, 9.2909e-03, + 2DIAGNOSTIC, 54, -4.556338261722e-01, 5.234359136197e-05, 1.1951e+00, 7.4711e-03, + 2DIAGNOSTIC, 55, -4.558833156976e-01, 4.930106706233e-05, 1.2125e+00, 1.7386e-02, + 2DIAGNOSTIC, 56, -4.559194263516e-01, 4.751355347024e-05, 1.2251e+00, 1.2665e-02, + 2DIAGNOSTIC, 57, -4.559786359648e-01, 4.565745702207e-05, 1.2293e+00, 4.1800e-03, + 2DIAGNOSTIC, 58, -4.561042637408e-01, 4.312853853733e-05, 1.2328e+00, 3.4769e-03, + 2DIAGNOSTIC, 59, -4.561095628013e-01, 3.656809413936e-05, 1.2353e+00, 2.4941e-03, + 2DIAGNOSTIC, 60, -4.568077148521e-01, 3.378167298600e-05, 1.2377e+00, 2.3658e-03, + 2DIAGNOSTIC, 61, -4.570450361583e-01, 3.266468193190e-05, 1.2489e+00, 1.1291e-02, + 2DIAGNOSTIC, 62, -4.570959821677e-01, 3.516682329571e-05, 1.2579e+00, 8.9121e-03, + 2DIAGNOSTIC, 63, -4.574020579723e-01, 4.084334944406e-05, 1.2694e+00, 1.1512e-02, + 2DIAGNOSTIC, 64, -4.580893084773e-01, 4.845787007745e-05, 1.2784e+00, 8.9979e-03, + 2DIAGNOSTIC, 65, -4.588575158560e-01, 6.088378133521e-05, 1.2878e+00, 9.4259e-03, + 2DIAGNOSTIC, 66, -4.598689423270e-01, 7.701273153510e-05, 1.2925e+00, 4.6690e-03, + 2DIAGNOSTIC, 67, -4.599319125325e-01, 8.639936815424e-05, 1.3151e+00, 2.2620e-02, + 2DIAGNOSTIC, 68, -4.603459771461e-01, 9.250161893691e-05, 1.3235e+00, 8.4670e-03, + 2DIAGNOSTIC, 69, -4.604499267564e-01, 9.031311275437e-05, 1.3293e+00, 5.7871e-03, + 2DIAGNOSTIC, 70, -4.605437025406e-01, 8.652801965983e-05, 1.3434e+00, 1.4084e-02, + 2DIAGNOSTIC, 71, -4.605020471868e-01, 7.628569930861e-05, 1.3504e+00, 7.0288e-03, + 2DIAGNOSTIC, 72, -4.605623630313e-01, 6.008462581874e-05, 1.3568e+00, 6.3400e-03, + 2DIAGNOSTIC, 73, -4.606538252834e-01, 4.200882038507e-05, 1.3728e+00, 1.5973e-02, + 2DIAGNOSTIC, 74, -4.607051071434e-01, 2.660062878690e-05, 1.3758e+00, 2.9950e-03, + 2DIAGNOSTIC, 75, -4.606548984147e-01, 1.494412367798e-05, 1.3787e+00, 2.9430e-03, + 2DIAGNOSTIC, 76, -4.606137061264e-01, 1.033244295733e-05, 1.3811e+00, 2.4340e-03, + 2DIAGNOSTIC, 77, -4.605116277110e-01, 4.494005306907e-06, 1.3838e+00, 2.6441e-03, + 2DIAGNOSTIC, 78, -4.605999156189e-01, 2.456010287855e-06, 1.3868e+00, 3.0010e-03, + 2DIAGNOSTIC, 79, -4.606311177379e-01, 1.291944828277e-06, 1.3898e+00, 3.0470e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.527016977609e-01, 1.797693134862e+308, 1.7525e+00, 3.6263e-01, + 2DIAGNOSTIC, 2, -3.535351748703e-01, 1.797693134862e+308, 1.7692e+00, 1.6785e-02, + 2DIAGNOSTIC, 3, -3.543617073152e-01, 1.797693134862e+308, 1.7969e+00, 2.7630e-02, + 2DIAGNOSTIC, 4, -3.548993659720e-01, 1.797693134862e+308, 1.8289e+00, 3.2051e-02, + 2DIAGNOSTIC, 5, -3.562022405039e-01, 1.797693134862e+308, 1.8633e+00, 3.4342e-02, + 2DIAGNOSTIC, 6, -3.611853558294e-01, 1.797693134862e+308, 1.8896e+00, 2.6379e-02, + 2DIAGNOSTIC, 7, -3.664369980719e-01, 1.797693134862e+308, 1.9296e+00, 3.9962e-02, + 2DIAGNOSTIC, 8, -3.697852017847e-01, 1.797693134862e+308, 1.9541e+00, 2.4458e-02, + 2DIAGNOSTIC, 9, -3.741738723253e-01, 1.797693134862e+308, 1.9792e+00, 2.5188e-02, + 2DIAGNOSTIC, 10, -3.777019087953e-01, 4.717947789701e-03, 2.0108e+00, 3.1504e-02, + 2DIAGNOSTIC, 11, -3.851335751990e-01, 5.162656470192e-03, 2.0509e+00, 4.0149e-02, + 2DIAGNOSTIC, 12, -3.908385048946e-01, 5.471110045551e-03, 2.0836e+00, 3.2675e-02, + 2DIAGNOSTIC, 13, -3.942676316076e-01, 5.485045557379e-03, 2.1186e+00, 3.5001e-02, + 2DIAGNOSTIC, 14, -4.058170872924e-01, 5.656716624506e-03, 2.1521e+00, 3.3558e-02, + 2DIAGNOSTIC, 15, -4.149129819236e-01, 5.792083483269e-03, 2.1767e+00, 2.4528e-02, + 2DIAGNOSTIC, 16, -4.516444951734e-01, 7.291660251705e-03, 2.2207e+00, 4.4031e-02, + 2DIAGNOSTIC, 17, -4.923521653455e-01, 9.824954204938e-03, 2.2626e+00, 4.1948e-02, + 2DIAGNOSTIC, 18, -5.382437507708e-01, 1.298496496068e-02, 2.2991e+00, 3.6432e-02, + 2DIAGNOSTIC, 19, -5.636717074194e-01, 1.556303166953e-02, 2.3333e+00, 3.4197e-02, + 2DIAGNOSTIC, 20, -5.799401047867e-01, 1.702275436220e-02, 2.3721e+00, 3.8817e-02, + 2DIAGNOSTIC, 21, -5.817792459937e-01, 1.702545207220e-02, 2.4151e+00, 4.3032e-02, + 2DIAGNOSTIC, 22, -5.828323381617e-01, 1.566068375231e-02, 2.4499e+00, 3.4743e-02, + 2DIAGNOSTIC, 23, -5.854139358252e-01, 1.316960663892e-02, 2.4975e+00, 4.7625e-02, + 2DIAGNOSTIC, 24, -5.859669711127e-01, 1.006656562742e-02, 2.5542e+00, 5.6711e-02, + 2DIAGNOSTIC, 25, -5.868316285152e-01, 6.605708538581e-03, 2.5718e+00, 1.7566e-02, + 2DIAGNOSTIC, 26, -5.872992197746e-01, 3.770162601328e-03, 2.6017e+00, 2.9977e-02, + 2DIAGNOSTIC, 27, -5.872908564840e-01, 1.773488230661e-03, 2.6648e+00, 6.3015e-02, + 2DIAGNOSTIC, 28, -5.872975552100e-01, 7.905953735707e-04, 2.7058e+00, 4.1071e-02, + 2DIAGNOSTIC, 29, -5.872845032656e-01, 3.446833455459e-04, 2.7209e+00, 1.5099e-02, + 2DIAGNOSTIC, 30, -5.872705299094e-01, 2.311248407724e-04, 2.7573e+00, 3.6405e-02, + 2DIAGNOSTIC, 31, -5.872407527341e-01, 1.400747938205e-04, 2.7947e+00, 3.7399e-02, + 2DIAGNOSTIC, 32, -5.872260667516e-01, 6.128424573287e-05, 2.8443e+00, 4.9542e-02, + 2DIAGNOSTIC, 33, -5.872276015422e-01, 2.900028346870e-05, 2.8692e+00, 2.4894e-02, + 2DIAGNOSTIC, 34, -5.872291310294e-01, 5.639805949635e-06, 2.8820e+00, 1.2815e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.936158257367e-01, 1.797693134862e+308, 3.6468e+00, 7.6481e-01, + 2DIAGNOSTIC, 2, -4.937766531123e-01, 1.797693134862e+308, 3.8004e+00, 1.5355e-01, + 2DIAGNOSTIC, 3, -4.939499687329e-01, 1.797693134862e+308, 3.9539e+00, 1.5354e-01, + 2DIAGNOSTIC, 4, -4.941540378799e-01, 1.797693134862e+308, 4.1421e+00, 1.8818e-01, + 2DIAGNOSTIC, 5, -4.944760410404e-01, 1.797693134862e+308, 4.3277e+00, 1.8564e-01, + 2DIAGNOSTIC, 6, -4.953972481119e-01, 1.797693134862e+308, 4.6226e+00, 2.9489e-01, + 2DIAGNOSTIC, 7, -4.956567848374e-01, 1.797693134862e+308, 4.7651e+00, 1.4246e-01, + 2DIAGNOSTIC, 8, -4.958015811827e-01, 1.797693134862e+308, 4.9274e+00, 1.6229e-01, + 2DIAGNOSTIC, 9, -4.966118905282e-01, 1.797693134862e+308, 5.1237e+00, 1.9629e-01, + 2DIAGNOSTIC, 10, -4.973949364065e-01, 4.859524685459e-04, 5.2542e+00, 1.3053e-01, + 2DIAGNOSTIC, 11, -4.976658379765e-01, 4.872836202139e-04, 5.4014e+00, 1.4717e-01, + 2DIAGNOSTIC, 12, -4.976998908736e-01, 4.547315668063e-04, 5.6249e+00, 2.2356e-01, + 2DIAGNOSTIC, 13, -4.977039685897e-01, 3.951818238529e-04, 5.8552e+00, 2.3026e-01, + 2DIAGNOSTIC, 14, -4.977062978933e-01, 3.167017840697e-04, 6.0191e+00, 1.6396e-01, + 2DIAGNOSTIC, 15, -4.977067628006e-01, 2.309056722234e-04, 6.3070e+00, 2.8785e-01, + 2DIAGNOSTIC, 16, -4.977027490052e-01, 1.677365691794e-04, 6.4911e+00, 1.8414e-01, + 2DIAGNOSTIC, 17, -4.977014314031e-01, 1.060383624301e-04, 6.6516e+00, 1.6053e-01, + 2DIAGNOSTIC, 18, -4.977001314728e-01, 4.585543165404e-05, 6.7938e+00, 1.4219e-01, + 2DIAGNOSTIC, 19, -4.976989825828e-01, 1.176297645689e-05, 6.9216e+00, 1.2771e-01, + 2DIAGNOSTIC, 20, -4.976980629576e-01, 2.333354409668e-06, 7.0490e+00, 1.2740e-01, + 2DIAGNOSTIC, 21, -4.977051148956e-01, 1.289981407096e-06, 7.1791e+00, 1.3011e-01, + 2DIAGNOSTIC, 22, -4.977056480523e-01, 1.255880965716e-06, 7.3032e+00, 1.2410e-01, + 2DIAGNOSTIC, 23, -4.977033777407e-01, 1.286820409632e-06, 7.4475e+00, 1.4430e-01, + 2DIAGNOSTIC, 24, -4.977094118133e-01, 1.527036446923e-06, 7.5905e+00, 1.4302e-01, + 2DIAGNOSTIC, 25, -4.977083600299e-01, 1.713160339319e-06, 7.8534e+00, 2.6294e-01, + 2DIAGNOSTIC, 26, -4.977105305654e-01, 1.802107128641e-06, 8.0528e+00, 1.9933e-01, + 2DIAGNOSTIC, 27, -4.977103539250e-01, 1.798630624300e-06, 8.2370e+00, 1.8421e-01, + 2DIAGNOSTIC, 28, -4.977081125793e-01, 1.668104930949e-06, 8.4073e+00, 1.7038e-01, + 2DIAGNOSTIC, 29, -4.977109421446e-01, 1.532238343420e-06, 8.5409e+00, 1.3359e-01, + 2DIAGNOSTIC, 30, -4.977130293223e-01, 1.379932389460e-06, 8.7280e+00, 1.8706e-01, + 2DIAGNOSTIC, 31, -4.977091101410e-01, 1.264497202974e-06, 8.8655e+00, 1.3749e-01, + 2DIAGNOSTIC, 32, -4.977080375591e-01, 1.129720916135e-06, 9.0039e+00, 1.3842e-01, + Elapsed time (stage 0): 9.2520e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.465817777348e-01, 1.797693134862e+308, 3.7375e-01, 3.7375e-01, + 2DIAGNOSTIC, 2, -8.490704953426e-01, 1.797693134862e+308, 3.7655e-01, 2.7978e-03, + 2DIAGNOSTIC, 3, -8.517823335985e-01, 1.797693134862e+308, 3.7793e-01, 1.3881e-03, + 2DIAGNOSTIC, 4, -8.536256431217e-01, 1.797693134862e+308, 3.7939e-01, 1.4529e-03, + 2DIAGNOSTIC, 5, -8.581564983427e-01, 1.797693134862e+308, 3.8053e-01, 1.1420e-03, + 2DIAGNOSTIC, 6, -8.663221543766e-01, 1.797693134862e+308, 3.8178e-01, 1.2560e-03, + 2DIAGNOSTIC, 7, -8.800159554925e-01, 1.797693134862e+308, 3.9090e-01, 9.1190e-03, + 2DIAGNOSTIC, 8, -8.951891485675e-01, 1.797693134862e+308, 3.9381e-01, 2.9109e-03, + 2DIAGNOSTIC, 9, -9.077676316639e-01, 1.797693134862e+308, 4.0055e-01, 6.7379e-03, + 2DIAGNOSTIC, 10, -9.087871860055e-01, 5.142364398163e-03, 4.0508e-01, 4.5280e-03, + 2DIAGNOSTIC, 11, -9.088809036797e-01, 4.938732161103e-03, 4.0934e-01, 4.2579e-03, + 2DIAGNOSTIC, 12, -9.093255026454e-01, 4.405727730540e-03, 4.1361e-01, 4.2679e-03, + 2DIAGNOSTIC, 13, -9.107930996502e-01, 3.658944274831e-03, 4.1744e-01, 3.8369e-03, + 2DIAGNOSTIC, 14, -9.122850220050e-01, 2.764654835789e-03, 4.2084e-01, 3.4008e-03, + 2DIAGNOSTIC, 15, -9.145345173915e-01, 1.888635383065e-03, 4.2549e-01, 4.6451e-03, + 2DIAGNOSTIC, 16, -9.169654833054e-01, 1.164311629670e-03, 4.2760e-01, 2.1071e-03, + 2DIAGNOSTIC, 17, -9.186867225835e-01, 7.054413000239e-04, 4.2961e-01, 2.0139e-03, + 2DIAGNOSTIC, 18, -9.230052138146e-01, 5.733648052613e-04, 4.3687e-01, 7.2551e-03, + 2DIAGNOSTIC, 19, -9.249834873729e-01, 6.446783834764e-04, 4.4203e-01, 5.1599e-03, + 2DIAGNOSTIC, 20, -9.257930607552e-01, 6.779765205851e-04, 4.4703e-01, 5.0042e-03, + 2DIAGNOSTIC, 21, -9.274136593125e-01, 6.716141144121e-04, 4.5428e-01, 7.2460e-03, + 2DIAGNOSTIC, 22, -9.274145803861e-01, 6.091382718538e-04, 4.6297e-01, 8.6970e-03, + 2DIAGNOSTIC, 23, -9.277134643006e-01, 5.193743556150e-04, 4.7285e-01, 9.8801e-03, + 2DIAGNOSTIC, 24, -9.293995394287e-01, 4.300808609658e-04, 4.9435e-01, 2.1502e-02, + 2DIAGNOSTIC, 25, -9.290883388230e-01, 3.317794662430e-04, 4.9820e-01, 3.8488e-03, + 2DIAGNOSTIC, 26, -9.293400816055e-01, 2.431986135399e-04, 5.0151e-01, 3.3019e-03, + 2DIAGNOSTIC, 27, -9.296029969890e-01, 1.608300451596e-04, 5.0704e-01, 5.5380e-03, + 2DIAGNOSTIC, 28, -9.290263251138e-01, 1.110227928649e-04, 5.1013e-01, 3.0909e-03, + 2DIAGNOSTIC, 29, -9.285422593881e-01, 7.047272732268e-05, 5.1327e-01, 3.1400e-03, + 2DIAGNOSTIC, 30, -9.282252687942e-01, 3.095701332697e-05, 5.1752e-01, 4.2439e-03, + 2DIAGNOSTIC, 31, -9.282875685110e-01, 8.461279946512e-06, 5.2414e-01, 6.6199e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.981688765113e-01, 1.797693134862e+308, 8.7748e-01, 3.5334e-01, + 2DIAGNOSTIC, 2, -7.967845441314e-01, 1.797693134862e+308, 8.8469e-01, 7.2131e-03, + 2DIAGNOSTIC, 3, -7.977846222216e-01, 1.797693134862e+308, 8.9577e-01, 1.1077e-02, + 2DIAGNOSTIC, 4, -7.989616795332e-01, 1.797693134862e+308, 9.0596e-01, 1.0197e-02, + 2DIAGNOSTIC, 5, -7.995607627976e-01, 1.797693134862e+308, 9.1113e-01, 5.1680e-03, + 2DIAGNOSTIC, 6, -7.996749956507e-01, 1.797693134862e+308, 9.2788e-01, 1.6753e-02, + 2DIAGNOSTIC, 7, -7.997295141753e-01, 1.797693134862e+308, 9.3325e-01, 5.3720e-03, + 2DIAGNOSTIC, 8, -8.004285218878e-01, 1.797693134862e+308, 9.3826e-01, 5.0070e-03, + 2DIAGNOSTIC, 9, -8.011976578940e-01, 1.797693134862e+308, 9.4328e-01, 5.0149e-03, + 2DIAGNOSTIC, 10, -8.013212242280e-01, 3.317534590215e-04, 9.5138e-01, 8.1048e-03, + 2DIAGNOSTIC, 11, -8.014156719865e-01, 3.165008579530e-04, 9.6069e-01, 9.3040e-03, + 2DIAGNOSTIC, 12, -8.010053281105e-01, 2.226185231725e-04, 9.6507e-01, 4.3809e-03, + 2DIAGNOSTIC, 13, -8.011009136817e-01, 1.526184690026e-04, 9.7811e-01, 1.3043e-02, + 2DIAGNOSTIC, 14, -8.011185773337e-01, 1.083756553927e-04, 9.9388e-01, 1.5767e-02, + 2DIAGNOSTIC, 15, -8.009485929642e-01, 7.045832177037e-05, 9.9955e-01, 5.6751e-03, + 2DIAGNOSTIC, 16, -8.006043879841e-01, 2.648198662705e-05, 1.0129e+00, 1.3320e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.756717518240e-01, 1.797693134862e+308, 1.3582e+00, 3.4530e-01, + 2DIAGNOSTIC, 2, -6.769221273737e-01, 1.797693134862e+308, 1.3865e+00, 2.8378e-02, + 2DIAGNOSTIC, 3, -6.777840098702e-01, 1.797693134862e+308, 1.4286e+00, 4.2027e-02, + 2DIAGNOSTIC, 4, -6.783955743427e-01, 1.797693134862e+308, 1.4734e+00, 4.4782e-02, + 2DIAGNOSTIC, 5, -6.789456163727e-01, 1.797693134862e+308, 1.4958e+00, 2.2484e-02, + 2DIAGNOSTIC, 6, -6.795787239428e-01, 1.797693134862e+308, 1.5379e+00, 4.2077e-02, + 2DIAGNOSTIC, 7, -6.810254361453e-01, 1.797693134862e+308, 1.5776e+00, 3.9685e-02, + 2DIAGNOSTIC, 8, -6.812187558429e-01, 1.797693134862e+308, 1.6537e+00, 7.6093e-02, + 2DIAGNOSTIC, 9, -6.812110175082e-01, 1.797693134862e+308, 1.7131e+00, 5.9428e-02, + 2DIAGNOSTIC, 10, -6.812915425705e-01, 5.517838183483e-04, 1.7485e+00, 3.5371e-02, + 2DIAGNOSTIC, 11, -6.813113353959e-01, 4.109704190064e-04, 1.7968e+00, 4.8338e-02, + 2DIAGNOSTIC, 12, -6.812937077517e-01, 2.988301213467e-04, 1.8526e+00, 5.5740e-02, + 2DIAGNOSTIC, 13, -6.813362485388e-01, 2.061049472587e-04, 1.8859e+00, 3.3359e-02, + 2DIAGNOSTIC, 14, -6.813710873687e-01, 1.278660920222e-04, 1.9314e+00, 4.5483e-02, + 2DIAGNOSTIC, 15, -6.814273819773e-01, 6.552154575901e-05, 1.9864e+00, 5.5020e-02, + 2DIAGNOSTIC, 16, -6.814833202231e-01, 2.211831453287e-05, 2.0149e+00, 2.8415e-02, + 2DIAGNOSTIC, 17, -6.816506184947e-01, 2.154070347511e-05, 2.0506e+00, 3.5709e-02, + 2DIAGNOSTIC, 18, -6.820640245568e-01, 3.323622770156e-05, 2.0976e+00, 4.7086e-02, + 2DIAGNOSTIC, 19, -6.826539287355e-01, 5.331092813384e-05, 2.1662e+00, 6.8551e-02, + 2DIAGNOSTIC, 20, -6.828175265968e-01, 7.145162628872e-05, 2.1991e+00, 3.2926e-02, + 2DIAGNOSTIC, 21, -6.828657155673e-01, 8.288221645739e-05, 2.2328e+00, 3.3635e-02, + 2DIAGNOSTIC, 22, -6.829740973172e-01, 8.750526290497e-05, 2.2817e+00, 4.8926e-02, + 2DIAGNOSTIC, 23, -6.829672423768e-01, 8.415758276714e-05, 2.3132e+00, 3.1504e-02, + 2DIAGNOSTIC, 24, -6.829656272231e-01, 7.376985912510e-05, 2.3534e+00, 4.0178e-02, + 2DIAGNOSTIC, 25, -6.829578613013e-01, 5.828649596550e-05, 2.3885e+00, 3.5180e-02, + 2DIAGNOSTIC, 26, -6.829729864224e-01, 3.990609346367e-05, 2.4161e+00, 2.7590e-02, + 2DIAGNOSTIC, 27, -6.830918368516e-01, 2.359881328472e-05, 2.4626e+00, 4.6491e-02, + 2DIAGNOSTIC, 28, -6.832218793420e-01, 1.417799424661e-05, 2.4918e+00, 2.9207e-02, + 2DIAGNOSTIC, 29, -6.832749511420e-01, 1.336507007140e-05, 2.5495e+00, 5.7663e-02, + 2DIAGNOSTIC, 30, -6.832927512744e-01, 1.399525462091e-05, 2.6784e+00, 1.2891e-01, + 2DIAGNOSTIC, 31, -6.832927512715e-01, 1.398693241693e-05, 2.8444e+00, 1.6604e-01, + 2DIAGNOSTIC, 32, -6.832927512715e-01, 1.414539810386e-05, 2.8859e+00, 4.1434e-02, + 2DIAGNOSTIC, 33, -6.832927512715e-01, 1.293083975284e-05, 2.9141e+00, 2.8198e-02, + 2DIAGNOSTIC, 34, -6.832927512715e-01, 1.064325333617e-05, 2.9555e+00, 4.1400e-02, + 2DIAGNOSTIC, 35, -6.832927512715e-01, 7.503275687947e-06, 2.9897e+00, 3.4212e-02, + 2DIAGNOSTIC, 36, -6.832927512715e-01, 4.074403815339e-06, 3.0206e+00, 3.0940e-02, + 2DIAGNOSTIC, 37, -6.832927512715e-01, 1.835504121226e-06, 3.0620e+00, 4.1411e-02, + 2DIAGNOSTIC, 38, -6.832927512715e-01, 1.034280844071e-06, 3.1143e+00, 5.2245e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.696954542705e-01, 1.797693134862e+308, 3.9402e+00, 8.2590e-01, + 2DIAGNOSTIC, 2, -5.704943967627e-01, 1.797693134862e+308, 4.1035e+00, 1.6334e-01, + 2DIAGNOSTIC, 3, -5.710715379090e-01, 1.797693134862e+308, 4.2691e+00, 1.6553e-01, + 2DIAGNOSTIC, 4, -5.715214897131e-01, 1.797693134862e+308, 4.4336e+00, 1.6451e-01, + 2DIAGNOSTIC, 5, -5.719508720138e-01, 1.797693134862e+308, 4.6004e+00, 1.6685e-01, + 2DIAGNOSTIC, 6, -5.727575591114e-01, 1.797693134862e+308, 4.9975e+00, 3.9705e-01, + 2DIAGNOSTIC, 7, -5.728521335276e-01, 1.797693134862e+308, 5.2388e+00, 2.4134e-01, + 2DIAGNOSTIC, 8, -5.729257383516e-01, 1.797693134862e+308, 5.4377e+00, 1.9893e-01, + 2DIAGNOSTIC, 9, -5.730165177561e-01, 1.797693134862e+308, 5.6088e+00, 1.7108e-01, + 2DIAGNOSTIC, 10, -5.730863154306e-01, 3.833577278583e-04, 5.7723e+00, 1.6353e-01, + 2DIAGNOSTIC, 11, -5.731709331742e-01, 2.719508904198e-04, 5.9065e+00, 1.3415e-01, + 2DIAGNOSTIC, 12, -5.732197162090e-01, 1.897375228119e-04, 6.1148e+00, 2.0832e-01, + 2DIAGNOSTIC, 13, -5.732335191253e-01, 1.260444618150e-04, 6.2727e+00, 1.5790e-01, + 2DIAGNOSTIC, 14, -5.732528470290e-01, 7.683218105189e-05, 6.4233e+00, 1.5057e-01, + 2DIAGNOSTIC, 15, -5.732832118366e-01, 4.186925647356e-05, 6.6405e+00, 2.1719e-01, + 2DIAGNOSTIC, 16, -5.732893153465e-01, 3.277930866225e-05, 6.8615e+00, 2.2106e-01, + 2DIAGNOSTIC, 17, -5.733045124836e-01, 2.511527835131e-05, 7.0687e+00, 2.0714e-01, + 2DIAGNOSTIC, 18, -5.733191980949e-01, 1.857163713941e-05, 7.2325e+00, 1.6379e-01, + 2DIAGNOSTIC, 19, -5.733246188746e-01, 1.365276212608e-05, 7.4212e+00, 1.8869e-01, + 2DIAGNOSTIC, 20, -5.733564774803e-01, 1.058790744942e-05, 7.5899e+00, 1.6872e-01, + 2DIAGNOSTIC, 21, -5.733946539566e-01, 9.836925203115e-06, 7.7497e+00, 1.5986e-01, + 2DIAGNOSTIC, 22, -5.735014611478e-01, 1.187311491876e-05, 7.9192e+00, 1.6943e-01, + 2DIAGNOSTIC, 23, -5.735176890654e-01, 1.335085169764e-05, 8.1281e+00, 2.0892e-01, + 2DIAGNOSTIC, 24, -5.735349309984e-01, 1.435272516828e-05, 8.2921e+00, 1.6401e-01, + 2DIAGNOSTIC, 25, -5.735489214287e-01, 1.495123318370e-05, 8.4870e+00, 1.9488e-01, + 2DIAGNOSTIC, 26, -5.735707210204e-01, 1.472564185934e-05, 8.6837e+00, 1.9671e-01, + 2DIAGNOSTIC, 27, -5.737116318688e-01, 1.607645844380e-05, 8.9385e+00, 2.5480e-01, + 2DIAGNOSTIC, 28, -5.737340382939e-01, 1.652206402243e-05, 9.1469e+00, 2.0841e-01, + 2DIAGNOSTIC, 29, -5.737612811988e-01, 1.608201025016e-05, 9.3143e+00, 1.6745e-01, + 2DIAGNOSTIC, 30, -5.737692334959e-01, 1.494370116530e-05, 9.4992e+00, 1.8481e-01, + 2DIAGNOSTIC, 31, -5.738013161994e-01, 1.363996500148e-05, 9.6315e+00, 1.3233e-01, + 2DIAGNOSTIC, 32, -5.738819745459e-01, 1.408269129955e-05, 9.7584e+00, 1.2693e-01, + 2DIAGNOSTIC, 33, -5.740863866412e-01, 1.653149253818e-05, 9.9803e+00, 2.2188e-01, + 2DIAGNOSTIC, 34, -5.741504333656e-01, 1.850357111142e-05, 1.0161e+01, 1.8092e-01, + 2DIAGNOSTIC, 35, -5.741686893602e-01, 1.919344238338e-05, 1.0391e+01, 2.2980e-01, + 2DIAGNOSTIC, 36, -5.742059902820e-01, 1.891182884135e-05, 1.0623e+01, 2.3176e-01, + 2DIAGNOSTIC, 37, -5.743053199096e-01, 2.011946772342e-05, 1.0816e+01, 1.9280e-01, + 2DIAGNOSTIC, 38, -5.744648975114e-01, 2.172220126074e-05, 1.1066e+01, 2.5010e-01, + 2DIAGNOSTIC, 39, -5.745576450699e-01, 2.273693438756e-05, 1.1254e+01, 1.8853e-01, + 2DIAGNOSTIC, 40, -5.745730768873e-01, 2.194472804581e-05, 1.1479e+01, 2.2433e-01, + 2DIAGNOSTIC, 41, -5.745751979499e-01, 1.962794005347e-05, 1.1632e+01, 1.5381e-01, + 2DIAGNOSTIC, 42, -5.745699676593e-01, 1.644637127916e-05, 1.1798e+01, 1.6590e-01, + 2DIAGNOSTIC, 43, -5.745701652630e-01, 1.422705887071e-05, 1.1991e+01, 1.9282e-01, + 2DIAGNOSTIC, 44, -5.745667665093e-01, 1.149499410296e-05, 1.2204e+01, 2.1244e-01, + 2DIAGNOSTIC, 45, -5.745652962588e-01, 8.062864988227e-06, 1.2403e+01, 1.9924e-01, + 2DIAGNOSTIC, 46, -5.745748700696e-01, 4.587174865289e-06, 1.2598e+01, 1.9515e-01, + 2DIAGNOSTIC, 47, -5.745863559143e-01, 2.018776214398e-06, 1.2804e+01, 2.0658e-01, + 2DIAGNOSTIC, 48, -5.745960468982e-01, 1.149529918650e-06, 1.2968e+01, 1.6337e-01, + 2DIAGNOSTIC, 49, -5.746639033852e-01, 1.889295766354e-06, 1.3183e+01, 2.1529e-01, + 2DIAGNOSTIC, 50, -5.746720961301e-01, 2.697399973207e-06, 1.3348e+01, 1.6472e-01, + 2DIAGNOSTIC, 51, -5.746671454419e-01, 3.254929205887e-06, 1.3523e+01, 1.7504e-01, + 2DIAGNOSTIC, 52, -5.746638222602e-01, 3.466790112969e-06, 1.3713e+01, 1.8997e-01, + 2DIAGNOSTIC, 53, -5.746620390247e-01, 3.381403419996e-06, 1.3937e+01, 2.2434e-01, + 2DIAGNOSTIC, 54, -5.746656934520e-01, 3.026046952653e-06, 1.4205e+01, 2.6755e-01, + 2DIAGNOSTIC, 55, -5.746638613596e-01, 2.415160540097e-06, 1.4550e+01, 3.4573e-01, + 2DIAGNOSTIC, 56, -5.746638613733e-01, 1.743563291971e-06, 1.4868e+01, 3.1728e-01, + 2DIAGNOSTIC, 57, -5.746638613733e-01, 1.089427314121e-06, 1.5158e+01, 2.8994e-01, + Elapsed time (stage 1): 1.5368e+01 + + +Total elapsed time: 2.4628e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:14:53 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:14:54 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55cc7b4434f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.0727, -117.336] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cc7b448fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f477104f010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55cc7b444850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.0727, -117.336] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cc7b441f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f476d990010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55cc7b45bb80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.0727, -117.336] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cc7b448550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f476a2d1010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55cc7b460d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.0727, -117.336] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cc7b45ec00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4766c12010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55cc7b462f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.0727, -117.336] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cc7b4613a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4763553010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55cc7b463540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.0727, -117.336] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cc7b4634d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f475fe94010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.361285841305e-01, 1.797693134862e+308, 3.0362e-01, 3.0362e-01, + 2DIAGNOSTIC, 2, -6.395513070805e-01, 1.797693134862e+308, 3.0926e-01, 5.6438e-03, + 2DIAGNOSTIC, 3, -6.440822583447e-01, 1.797693134862e+308, 3.1464e-01, 5.3849e-03, + 2DIAGNOSTIC, 4, -6.491946027266e-01, 1.797693134862e+308, 3.2007e-01, 5.4281e-03, + 2DIAGNOSTIC, 5, -6.538520510997e-01, 1.797693134862e+308, 3.2591e-01, 5.8360e-03, + 2DIAGNOSTIC, 6, -6.569821564471e-01, 1.797693134862e+308, 3.3135e-01, 5.4400e-03, + 2DIAGNOSTIC, 7, -6.587607979342e-01, 1.797693134862e+308, 3.3894e-01, 7.5920e-03, + 2DIAGNOSTIC, 8, -6.592645348464e-01, 1.797693134862e+308, 3.4805e-01, 9.1062e-03, + 2DIAGNOSTIC, 9, -6.598738752165e-01, 1.797693134862e+308, 3.5803e-01, 9.9812e-03, + 2DIAGNOSTIC, 10, -6.602632147553e-01, 2.511795516714e-03, 3.6547e-01, 7.4370e-03, + 2DIAGNOSTIC, 11, -6.602938695685e-01, 1.792405748078e-03, 3.7337e-01, 7.9019e-03, + 2DIAGNOSTIC, 12, -6.604856492452e-01, 1.164139586064e-03, 3.8064e-01, 7.2691e-03, + 2DIAGNOSTIC, 13, -6.612735563844e-01, 7.046732789067e-04, 3.8694e-01, 6.3062e-03, + 2DIAGNOSTIC, 14, -6.612922379446e-01, 4.038797777555e-04, 3.9351e-01, 6.5660e-03, + 2DIAGNOSTIC, 15, -6.613034554820e-01, 2.403860686533e-04, 4.0171e-01, 8.2059e-03, + 2DIAGNOSTIC, 16, -6.613238680980e-01, 1.604152370837e-04, 4.0897e-01, 7.2570e-03, + 2DIAGNOSTIC, 17, -6.614746981230e-01, 1.243763703120e-04, 4.1298e-01, 4.0078e-03, + 2DIAGNOSTIC, 18, -6.614754567517e-01, 9.248158229251e-05, 4.1683e-01, 3.8540e-03, + 2DIAGNOSTIC, 19, -6.614762249305e-01, 6.927500110941e-05, 4.2014e-01, 3.3078e-03, + 2DIAGNOSTIC, 20, -6.614769457329e-01, 5.092685669844e-05, 4.3394e-01, 1.3799e-02, + 2DIAGNOSTIC, 21, -6.614778024969e-01, 3.046397886184e-05, 4.5123e-01, 1.7291e-02, + 2DIAGNOSTIC, 22, -6.614789941379e-01, 1.247988103239e-05, 4.5787e-01, 6.6371e-03, + 2DIAGNOSTIC, 23, -6.614793070818e-01, 9.848147019452e-06, 4.6319e-01, 5.3198e-03, + 2DIAGNOSTIC, 24, -6.614793895100e-01, 7.025689665784e-06, 4.8645e-01, 2.3262e-02, + 2DIAGNOSTIC, 25, -6.614796589821e-01, 4.116251183926e-06, 4.9244e-01, 5.9869e-03, + 2DIAGNOSTIC, 26, -6.614807320776e-01, 1.450435896985e-06, 4.9664e-01, 4.2050e-03, + 2DIAGNOSTIC, 27, -6.614823873027e-01, 1.401844930804e-06, 5.0168e-01, 5.0371e-03, + 2DIAGNOSTIC, 28, -6.614824358913e-01, 1.348117435081e-06, 5.1243e-01, 1.0750e-02, + 2DIAGNOSTIC, 29, -6.614824430232e-01, 1.290838987505e-06, 5.2743e-01, 1.5000e-02, + 2DIAGNOSTIC, 30, -6.614824657151e-01, 1.230500079212e-06, 5.3279e-01, 5.3611e-03, + 2DIAGNOSTIC, 31, -6.614825836840e-01, 1.171296051823e-06, 5.3657e-01, 3.7839e-03, + 2DIAGNOSTIC, 32, -6.614830059878e-01, 1.123781932233e-06, 5.4042e-01, 3.8431e-03, + 2DIAGNOSTIC, 33, -6.614837170319e-01, 1.080711530509e-06, 5.4362e-01, 3.2029e-03, + 2DIAGNOSTIC, 34, -6.614871592583e-01, 1.074493903380e-06, 5.5707e-01, 1.3455e-02, + 2DIAGNOSTIC, 35, -6.614871592309e-01, 1.057997037947e-06, 5.7053e-01, 1.3455e-02, + 2DIAGNOSTIC, 36, -6.614871592309e-01, 1.041506294496e-06, 5.7811e-01, 7.5850e-03, + 2DIAGNOSTIC, 37, -6.614871592309e-01, 1.031063010856e-06, 5.8334e-01, 5.2240e-03, + 2DIAGNOSTIC, 38, -6.614871592309e-01, 1.005463791559e-06, 5.8911e-01, 5.7678e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.508715492149e-01, 1.797693134862e+308, 1.0524e+00, 4.6327e-01, + 2DIAGNOSTIC, 2, -5.514007383092e-01, 1.797693134862e+308, 1.0673e+00, 1.4958e-02, + 2DIAGNOSTIC, 3, -5.518022997713e-01, 1.797693134862e+308, 1.1033e+00, 3.5922e-02, + 2DIAGNOSTIC, 4, -5.520869453597e-01, 1.797693134862e+308, 1.1520e+00, 4.8771e-02, + 2DIAGNOSTIC, 5, -5.522385973703e-01, 1.797693134862e+308, 1.2077e+00, 5.5632e-02, + 2DIAGNOSTIC, 6, -5.522674893571e-01, 1.797693134862e+308, 1.2274e+00, 1.9782e-02, + 2DIAGNOSTIC, 7, -5.522770932345e-01, 1.797693134862e+308, 1.2763e+00, 4.8834e-02, + 2DIAGNOSTIC, 8, -5.522724001411e-01, 1.797693134862e+308, 1.3013e+00, 2.5042e-02, + 2DIAGNOSTIC, 9, -5.522425675006e-01, 1.797693134862e+308, 1.3421e+00, 4.0792e-02, + 2DIAGNOSTIC, 10, -5.522436029767e-01, 1.335074563416e-04, 1.3796e+00, 3.7537e-02, + 2DIAGNOSTIC, 11, -5.522127834046e-01, 6.487475990719e-05, 1.4102e+00, 3.0503e-02, + 2DIAGNOSTIC, 12, -5.522061854133e-01, 2.431557158367e-05, 1.4564e+00, 4.6210e-02, + 2DIAGNOSTIC, 13, -5.522042522707e-01, 3.636522371397e-06, 1.4813e+00, 2.4962e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.581250430700e-01, 1.797693134862e+308, 2.1083e+00, 6.2702e-01, + 2DIAGNOSTIC, 2, -4.584832900306e-01, 1.797693134862e+308, 2.3712e+00, 2.6290e-01, + 2DIAGNOSTIC, 3, -4.586078901450e-01, 1.797693134862e+308, 2.5614e+00, 1.9014e-01, + 2DIAGNOSTIC, 4, -4.586227144258e-01, 1.797693134862e+308, 2.7544e+00, 1.9296e-01, + 2DIAGNOSTIC, 5, -4.587445723475e-01, 1.797693134862e+308, 2.9112e+00, 1.5689e-01, + 2DIAGNOSTIC, 6, -4.588271072861e-01, 1.797693134862e+308, 3.1668e+00, 2.5552e-01, + 2DIAGNOSTIC, 7, -4.588367771350e-01, 1.797693134862e+308, 3.3211e+00, 1.5433e-01, + 2DIAGNOSTIC, 8, -4.588472162368e-01, 1.797693134862e+308, 3.4776e+00, 1.5653e-01, + 2DIAGNOSTIC, 9, -4.588481350300e-01, 1.797693134862e+308, 3.6804e+00, 2.0274e-01, + 2DIAGNOSTIC, 10, -4.588477330161e-01, 8.515904188305e-05, 3.8850e+00, 2.0463e-01, + 2DIAGNOSTIC, 11, -4.588480096325e-01, 4.694324978001e-05, 4.1628e+00, 2.7776e-01, + 2DIAGNOSTIC, 12, -4.588459098158e-01, 2.943885212503e-05, 4.3652e+00, 2.0240e-01, + 2DIAGNOSTIC, 13, -4.588462383354e-01, 1.827001117738e-05, 4.5578e+00, 1.9264e-01, + 2DIAGNOSTIC, 14, -4.588447951012e-01, 7.744879337857e-06, 4.7211e+00, 1.6334e-01, + 2DIAGNOSTIC, 15, -4.588451832398e-01, 3.087688701858e-06, 4.8980e+00, 1.7684e-01, + 2DIAGNOSTIC, 16, -4.588427185731e-01, 2.018597823283e-06, 5.0594e+00, 1.6144e-01, + 2DIAGNOSTIC, 17, -4.588431866012e-01, 1.434343280857e-06, 5.2139e+00, 1.5444e-01, + 2DIAGNOSTIC, 18, -4.588444055610e-01, 1.354742665341e-06, 5.3830e+00, 1.6912e-01, + 2DIAGNOSTIC, 19, -4.588421267478e-01, 1.275246682794e-06, 5.5677e+00, 1.8466e-01, + 2DIAGNOSTIC, 20, -4.588427386649e-01, 1.249403105794e-06, 5.7968e+00, 2.2915e-01, + 2DIAGNOSTIC, 21, -4.588428278027e-01, 1.270202664466e-06, 5.9888e+00, 1.9199e-01, + 2DIAGNOSTIC, 22, -4.588419337146e-01, 1.226085424938e-06, 6.2615e+00, 2.7267e-01, + 2DIAGNOSTIC, 23, -4.588436742803e-01, 1.262896360765e-06, 6.4418e+00, 1.8032e-01, + 2DIAGNOSTIC, 24, -4.588398981421e-01, 1.171632728648e-06, 6.6151e+00, 1.7335e-01, + 2DIAGNOSTIC, 25, -4.588412377427e-01, 1.150107667637e-06, 6.8103e+00, 1.9517e-01, + 2DIAGNOSTIC, 26, -4.588407741712e-01, 1.069801382023e-06, 6.9596e+00, 1.4935e-01, + 2DIAGNOSTIC, 27, -4.588404720346e-01, 1.011985931144e-06, 7.1190e+00, 1.5939e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.964649561989e-01, 1.797693134862e+308, 1.0106e+01, 2.9868e+00, + 2DIAGNOSTIC, 2, -3.964647017938e-01, 1.797693134862e+308, 1.1245e+01, 1.1393e+00, + 2DIAGNOSTIC, 3, -3.964642646474e-01, 1.797693134862e+308, 1.2720e+01, 1.4754e+00, + 2DIAGNOSTIC, 4, -3.964644335984e-01, 1.797693134862e+308, 1.3781e+01, 1.0605e+00, + 2DIAGNOSTIC, 5, -3.964643199762e-01, 1.797693134862e+308, 1.4801e+01, 1.0201e+00, + 2DIAGNOSTIC, 6, -3.964640056248e-01, 1.797693134862e+308, 1.5731e+01, 9.2956e-01, + 2DIAGNOSTIC, 7, -3.964640467844e-01, 1.797693134862e+308, 1.6880e+01, 1.1498e+00, + 2DIAGNOSTIC, 8, -3.964641288819e-01, 1.797693134862e+308, 1.7687e+01, 8.0647e-01, + 2DIAGNOSTIC, 9, -3.964638454153e-01, 1.797693134862e+308, 1.8791e+01, 1.1038e+00, + 2DIAGNOSTIC, 10, -3.964639354613e-01, 3.030692062131e-06, 1.9664e+01, 8.7307e-01, + 2DIAGNOSTIC, 11, -3.964638062183e-01, 2.782418003083e-06, 2.0759e+01, 1.0954e+00, + 2DIAGNOSTIC, 12, -3.964639870158e-01, 2.581713759886e-06, 2.1837e+01, 1.0783e+00, + 2DIAGNOSTIC, 13, -3.964640855077e-01, 2.398510919335e-06, 2.2862e+01, 1.0244e+00, + 2DIAGNOSTIC, 14, -3.964637500339e-01, 2.237428760238e-06, 2.3926e+01, 1.0643e+00, + 2DIAGNOSTIC, 15, -3.964636730118e-01, 2.093058115063e-06, 2.4896e+01, 9.6986e-01, + 2DIAGNOSTIC, 16, -3.964635955748e-01, 1.951537256947e-06, 2.5907e+01, 1.0109e+00, + 2DIAGNOSTIC, 17, -3.964635609912e-01, 1.829829436681e-06, 2.6873e+01, 9.6607e-01, + 2DIAGNOSTIC, 18, -3.964634307189e-01, 1.723737866728e-06, 2.7960e+01, 1.0877e+00, + 2DIAGNOSTIC, 19, -3.964633876842e-01, 1.620766745064e-06, 2.9036e+01, 1.0752e+00, + 2DIAGNOSTIC, 20, -3.964631692454e-01, 1.528795239354e-06, 3.0037e+01, 1.0009e+00, + 2DIAGNOSTIC, 21, -3.964629773333e-01, 1.440226536531e-06, 3.1041e+01, 1.0048e+00, + 2DIAGNOSTIC, 22, -3.964631280831e-01, 1.377321287639e-06, 3.2127e+01, 1.0861e+00, + 2DIAGNOSTIC, 23, -3.964633086586e-01, 1.334992195928e-06, 3.3137e+01, 1.0092e+00, + 2DIAGNOSTIC, 24, -3.964635237488e-01, 1.296986920495e-06, 3.4242e+01, 1.1057e+00, + 2DIAGNOSTIC, 25, -3.964634311473e-01, 1.259905725505e-06, 3.5182e+01, 9.3959e-01, + 2DIAGNOSTIC, 26, -3.964633153643e-01, 1.221810863858e-06, 3.6287e+01, 1.1054e+00, + 2DIAGNOSTIC, 27, -3.964634611637e-01, 1.189721370823e-06, 3.7286e+01, 9.9860e-01, + 2DIAGNOSTIC, 28, -3.964632739138e-01, 1.150292646419e-06, 3.8292e+01, 1.0061e+00, + 2DIAGNOSTIC, 29, -3.964634085267e-01, 1.114693029873e-06, 3.9177e+01, 8.8488e-01, + 2DIAGNOSTIC, 30, -3.964634283015e-01, 1.075221102154e-06, 4.0104e+01, 9.2697e-01, + 2DIAGNOSTIC, 31, -3.964634170221e-01, 1.032213261344e-06, 4.1087e+01, 9.8278e-01, + 2DIAGNOSTIC, 32, -3.964639440138e-01, 1.006439210388e-06, 4.2089e+01, 1.0024e+00, + Elapsed time (stage 0): 4.2700e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.578297484316e-01, 1.797693134862e+308, 3.6858e-01, 3.6858e-01, + 2DIAGNOSTIC, 2, -6.598893449728e-01, 1.797693134862e+308, 3.7061e-01, 2.0289e-03, + 2DIAGNOSTIC, 3, -6.617771989803e-01, 1.797693134862e+308, 3.7703e-01, 6.4201e-03, + 2DIAGNOSTIC, 4, -6.632632957062e-01, 1.797693134862e+308, 3.8185e-01, 4.8220e-03, + 2DIAGNOSTIC, 5, -6.638911463741e-01, 1.797693134862e+308, 3.8846e-01, 6.6102e-03, + 2DIAGNOSTIC, 6, -6.643190111796e-01, 1.797693134862e+308, 3.9274e-01, 4.2810e-03, + 2DIAGNOSTIC, 7, -6.644545592071e-01, 1.797693134862e+308, 3.9956e-01, 6.8219e-03, + 2DIAGNOSTIC, 8, -6.645695403953e-01, 1.797693134862e+308, 4.1262e-01, 1.3054e-02, + 2DIAGNOSTIC, 9, -6.644692371937e-01, 1.797693134862e+308, 4.4015e-01, 2.7535e-02, + 2DIAGNOSTIC, 10, -6.645434325631e-01, 5.734935990244e-04, 4.5137e-01, 1.1217e-02, + 2DIAGNOSTIC, 11, -6.645904501961e-01, 3.264556855379e-04, 4.5390e-01, 2.5280e-03, + 2DIAGNOSTIC, 12, -6.646377001669e-01, 1.657560080243e-04, 4.5747e-01, 3.5720e-03, + 2DIAGNOSTIC, 13, -6.646499643890e-01, 7.675373378058e-05, 4.6368e-01, 6.2089e-03, + 2DIAGNOSTIC, 14, -6.646583764057e-01, 3.921081881171e-05, 4.6883e-01, 5.1539e-03, + 2DIAGNOSTIC, 15, -6.646669482297e-01, 2.122480132789e-05, 4.7509e-01, 6.2611e-03, + 2DIAGNOSTIC, 16, -6.646745802975e-01, 1.525484746387e-05, 4.8328e-01, 8.1859e-03, + 2DIAGNOSTIC, 17, -6.646870202772e-01, 1.238739286631e-05, 4.9349e-01, 1.0211e-02, + 2DIAGNOSTIC, 18, -6.646871900309e-01, 1.170253190877e-05, 5.0216e-01, 8.6739e-03, + 2DIAGNOSTIC, 19, -6.646881292451e-01, 7.913454641781e-06, 5.1713e-01, 1.4971e-02, + 2DIAGNOSTIC, 20, -6.646906672759e-01, 5.554059500083e-06, 5.2459e-01, 7.4570e-03, + 2DIAGNOSTIC, 21, -6.647010160515e-01, 4.192961239685e-06, 5.4358e-01, 1.8987e-02, + 2DIAGNOSTIC, 22, -6.647411313791e-01, 4.394285608833e-06, 5.5511e-01, 1.1534e-02, + 2DIAGNOSTIC, 23, -6.647419638446e-01, 4.526673022053e-06, 5.7490e-01, 1.9791e-02, + 2DIAGNOSTIC, 24, -6.647420230130e-01, 4.516212867942e-06, 5.8442e-01, 9.5150e-03, + 2DIAGNOSTIC, 25, -6.647421420965e-01, 4.364678142695e-06, 5.9177e-01, 7.3509e-03, + 2DIAGNOSTIC, 26, -6.647424679209e-01, 4.054205240737e-06, 6.0078e-01, 9.0141e-03, + 2DIAGNOSTIC, 27, -6.647431505340e-01, 3.697539104890e-06, 6.0846e-01, 7.6811e-03, + 2DIAGNOSTIC, 28, -6.647438274339e-01, 3.141714559986e-06, 6.1457e-01, 6.1100e-03, + 2DIAGNOSTIC, 29, -6.647457438863e-01, 2.487373488014e-06, 6.2556e-01, 1.0989e-02, + 2DIAGNOSTIC, 30, -6.647463133137e-01, 1.791962244410e-06, 6.3543e-01, 9.8710e-03, + 2DIAGNOSTIC, 31, -6.648829301123e-01, 3.085431010776e-06, 6.4036e-01, 4.9219e-03, + 2DIAGNOSTIC, 32, -6.647487846301e-01, 2.793358468041e-06, 6.4428e-01, 3.9239e-03, + 2DIAGNOSTIC, 33, -6.647488275703e-01, 2.430774480588e-06, 6.4863e-01, 4.3490e-03, + 2DIAGNOSTIC, 34, -6.647490281073e-01, 1.960990486348e-06, 6.5556e-01, 6.9311e-03, + 2DIAGNOSTIC, 35, -6.647497020050e-01, 1.397241356570e-06, 6.6362e-01, 8.0578e-03, + 2DIAGNOSTIC, 36, -6.648890798793e-01, 2.457521634858e-06, 6.6956e-01, 5.9409e-03, + 2DIAGNOSTIC, 37, -6.649011983427e-01, 3.433154390907e-06, 6.7379e-01, 4.2331e-03, + 2DIAGNOSTIC, 38, -6.652548603004e-01, 8.147139536223e-06, 6.8095e-01, 7.1568e-03, + 2DIAGNOSTIC, 39, -6.652591797176e-01, 1.190025206037e-05, 6.9976e-01, 1.8807e-02, + 2DIAGNOSTIC, 40, -6.652617033918e-01, 1.442292042549e-05, 7.0524e-01, 5.4820e-03, + 2DIAGNOSTIC, 41, -6.652652625537e-01, 1.705977277140e-05, 7.0826e-01, 3.0260e-03, + 2DIAGNOSTIC, 42, -6.652684788713e-01, 1.666166675560e-05, 7.1345e-01, 5.1908e-03, + 2DIAGNOSTIC, 43, -6.652733990210e-01, 1.477472947590e-05, 7.3278e-01, 1.9331e-02, + 2DIAGNOSTIC, 44, -6.652747355928e-01, 1.165103560726e-05, 7.3733e-01, 4.5469e-03, + 2DIAGNOSTIC, 45, -6.652771799703e-01, 7.669170626973e-06, 7.4204e-01, 4.7069e-03, + 2DIAGNOSTIC, 46, -6.652823287660e-01, 4.575033625640e-06, 7.5024e-01, 8.2030e-03, + 2DIAGNOSTIC, 47, -6.652897712740e-01, 1.325931060166e-06, 7.6492e-01, 1.4680e-02, + 2DIAGNOSTIC, 48, -6.652910772641e-01, 1.311173328931e-06, 7.7637e-01, 1.1451e-02, + 2DIAGNOSTIC, 49, -6.652933295582e-01, 1.293276040346e-06, 7.8711e-01, 1.0735e-02, + 2DIAGNOSTIC, 50, -6.652980827691e-01, 1.276879391110e-06, 8.0477e-01, 1.7665e-02, + 2DIAGNOSTIC, 51, -6.652990883484e-01, 1.236173269224e-06, 8.2031e-01, 1.5539e-02, + 2DIAGNOSTIC, 52, -6.653020651800e-01, 1.187890404784e-06, 8.5808e-01, 3.7772e-02, + 2DIAGNOSTIC, 53, -6.653319996028e-01, 1.367616889996e-06, 8.6625e-01, 8.1642e-03, + 2DIAGNOSTIC, 54, -6.653370892895e-01, 1.512013368326e-06, 8.7143e-01, 5.1792e-03, + 2DIAGNOSTIC, 55, -6.654719470702e-01, 2.631171408883e-06, 8.7720e-01, 5.7778e-03, + 2DIAGNOSTIC, 56, -6.653400396478e-01, 2.518395235202e-06, 8.9393e-01, 1.6728e-02, + 2DIAGNOSTIC, 57, -6.653403697348e-01, 2.320892671836e-06, 9.0395e-01, 1.0020e-02, + 2DIAGNOSTIC, 58, -6.654798015858e-01, 2.998948128319e-06, 9.0639e-01, 2.4369e-03, + 2DIAGNOSTIC, 59, -6.654811809683e-01, 3.394623149945e-06, 9.0959e-01, 3.1960e-03, + 2DIAGNOSTIC, 60, -6.654835648918e-01, 3.555824620801e-06, 9.1240e-01, 2.8179e-03, + 2DIAGNOSTIC, 61, -6.654864521773e-01, 3.478097310997e-06, 9.1799e-01, 5.5890e-03, + 2DIAGNOSTIC, 62, -6.654885391579e-01, 3.162546805234e-06, 9.2757e-01, 9.5730e-03, + 2DIAGNOSTIC, 63, -6.654893844355e-01, 2.790482370646e-06, 9.3631e-01, 8.7452e-03, + 2DIAGNOSTIC, 64, -6.654896042481e-01, 2.205694701985e-06, 9.4084e-01, 4.5261e-03, + 2DIAGNOSTIC, 65, -6.654905929465e-01, 2.407759730289e-06, 9.4544e-01, 4.6070e-03, + 2DIAGNOSTIC, 66, -6.654936016033e-01, 1.594396187687e-06, 9.5342e-01, 7.9780e-03, + 2DIAGNOSTIC, 67, -6.657836802177e-01, 2.525384606364e-06, 9.7742e-01, 2.4000e-02, + 2DIAGNOSTIC, 68, -6.657849773544e-01, 4.064450260936e-06, 9.8539e-01, 7.9691e-03, + 2DIAGNOSTIC, 69, -6.657849919210e-01, 5.242493788924e-06, 9.9543e-01, 1.0038e-02, + 2DIAGNOSTIC, 70, -6.657849923569e-01, 5.968969714330e-06, 1.0020e+00, 6.5560e-03, + 2DIAGNOSTIC, 71, -6.657849923641e-01, 6.153544627636e-06, 1.0190e+00, 1.6973e-02, + 2DIAGNOSTIC, 72, -6.657849923642e-01, 5.765943901503e-06, 1.0474e+00, 2.8399e-02, + 2DIAGNOSTIC, 73, -6.657849923642e-01, 4.874155418468e-06, 1.0624e+00, 1.5063e-02, + 2DIAGNOSTIC, 74, -6.657849923642e-01, 3.606914366634e-06, 1.0794e+00, 1.7010e-02, + 2DIAGNOSTIC, 75, -6.657849923642e-01, 2.092158175388e-06, 1.0970e+00, 1.7576e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.486082298224e-01, 1.797693134862e+308, 1.5315e+00, 4.3445e-01, + 2DIAGNOSTIC, 2, -5.495755812795e-01, 1.797693134862e+308, 1.5758e+00, 4.4313e-02, + 2DIAGNOSTIC, 3, -5.503766625298e-01, 1.797693134862e+308, 1.6249e+00, 4.9088e-02, + 2DIAGNOSTIC, 4, -5.509091778202e-01, 1.797693134862e+308, 1.6443e+00, 1.9439e-02, + 2DIAGNOSTIC, 5, -5.514166915109e-01, 1.797693134862e+308, 1.6759e+00, 3.1603e-02, + 2DIAGNOSTIC, 6, -5.524844248332e-01, 1.797693134862e+308, 1.7093e+00, 3.3400e-02, + 2DIAGNOSTIC, 7, -5.526580426308e-01, 1.797693134862e+308, 1.7474e+00, 3.8141e-02, + 2DIAGNOSTIC, 8, -5.528612232809e-01, 1.797693134862e+308, 1.7769e+00, 2.9417e-02, + 2DIAGNOSTIC, 9, -5.531075354942e-01, 1.797693134862e+308, 1.8130e+00, 3.6151e-02, + 2DIAGNOSTIC, 10, -5.532427841562e-01, 5.420705083198e-04, 1.8522e+00, 3.9210e-02, + 2DIAGNOSTIC, 11, -5.533290157865e-01, 4.011550259252e-04, 1.9025e+00, 5.0314e-02, + 2DIAGNOSTIC, 12, -5.533839017016e-01, 2.914111711938e-04, 1.9431e+00, 4.0599e-02, + 2DIAGNOSTIC, 13, -5.534044619635e-01, 2.052679949486e-04, 1.9787e+00, 3.5523e-02, + 2DIAGNOSTIC, 14, -5.535510469230e-01, 1.379100776804e-04, 2.0123e+00, 3.3644e-02, + 2DIAGNOSTIC, 15, -5.536698961702e-01, 8.757649711003e-05, 2.0545e+00, 4.2190e-02, + 2DIAGNOSTIC, 16, -5.538097255658e-01, 7.449116981131e-05, 2.0878e+00, 3.3354e-02, + 2DIAGNOSTIC, 17, -5.538215304737e-01, 6.182291136297e-05, 2.1635e+00, 7.5649e-02, + 2DIAGNOSTIC, 18, -5.538272371594e-01, 5.094591095697e-05, 2.1870e+00, 2.3546e-02, + 2DIAGNOSTIC, 19, -5.538333151979e-01, 4.342065649795e-05, 2.2187e+00, 3.1623e-02, + 2DIAGNOSTIC, 20, -5.538432732738e-01, 3.639036442835e-05, 2.2571e+00, 3.8470e-02, + 2DIAGNOSTIC, 21, -5.538550403288e-01, 2.914315091049e-05, 2.2817e+00, 2.4588e-02, + 2DIAGNOSTIC, 22, -5.538669108937e-01, 2.159003627707e-05, 2.3055e+00, 2.3748e-02, + 2DIAGNOSTIC, 23, -5.538776836389e-01, 1.349579108932e-05, 2.3447e+00, 3.9280e-02, + 2DIAGNOSTIC, 24, -5.538898495859e-01, 8.307383131144e-06, 2.3729e+00, 2.8111e-02, + 2DIAGNOSTIC, 25, -5.539005734639e-01, 5.461000610468e-06, 2.4169e+00, 4.4029e-02, + 2DIAGNOSTIC, 26, -5.538999465074e-01, 5.183855031558e-06, 2.4520e+00, 3.5097e-02, + 2DIAGNOSTIC, 27, -5.539143613603e-01, 5.056136447266e-06, 2.4998e+00, 4.7856e-02, + 2DIAGNOSTIC, 28, -5.539315179998e-01, 4.984703874042e-06, 2.5496e+00, 4.9745e-02, + 2DIAGNOSTIC, 29, -5.539056511607e-01, 4.194276110620e-06, 2.6117e+00, 6.2142e-02, + 2DIAGNOSTIC, 30, -5.539063354177e-01, 3.362330594746e-06, 2.6730e+00, 6.1306e-02, + 2DIAGNOSTIC, 31, -5.539083368333e-01, 2.592202079946e-06, 2.6970e+00, 2.3961e-02, + 2DIAGNOSTIC, 32, -5.539123989759e-01, 1.965632073817e-06, 2.7293e+00, 3.2274e-02, + 2DIAGNOSTIC, 33, -5.539148230929e-01, 1.481901251897e-06, 2.8252e+00, 9.5939e-02, + 2DIAGNOSTIC, 34, -5.539148825821e-01, 1.166937739369e-06, 2.8461e+00, 2.0901e-02, + 2DIAGNOSTIC, 35, -5.539150196176e-01, 1.017027913761e-06, 2.8886e+00, 4.2440e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.586792325824e-01, 1.797693134862e+308, 3.5841e+00, 6.9552e-01, + 2DIAGNOSTIC, 2, -4.593302206977e-01, 1.797693134862e+308, 3.7383e+00, 1.5420e-01, + 2DIAGNOSTIC, 3, -4.596979128893e-01, 1.797693134862e+308, 3.8854e+00, 1.4709e-01, + 2DIAGNOSTIC, 4, -4.599173538487e-01, 1.797693134862e+308, 4.0534e+00, 1.6799e-01, + 2DIAGNOSTIC, 5, -4.603915825914e-01, 1.797693134862e+308, 4.3010e+00, 2.4769e-01, + 2DIAGNOSTIC, 6, -4.608789920769e-01, 1.797693134862e+308, 4.5855e+00, 2.8449e-01, + 2DIAGNOSTIC, 7, -4.609040813965e-01, 1.797693134862e+308, 4.7880e+00, 2.0243e-01, + 2DIAGNOSTIC, 8, -4.609445516397e-01, 1.797693134862e+308, 4.9588e+00, 1.7088e-01, + 2DIAGNOSTIC, 9, -4.609915556655e-01, 1.797693134862e+308, 5.1243e+00, 1.6550e-01, + 2DIAGNOSTIC, 10, -4.610562144675e-01, 3.270334641902e-04, 5.3025e+00, 1.7819e-01, + 2DIAGNOSTIC, 11, -4.611215102083e-01, 2.270791220051e-04, 5.5177e+00, 2.1517e-01, + 2DIAGNOSTIC, 12, -4.611393946872e-01, 1.579685351630e-04, 5.6612e+00, 1.4350e-01, + 2DIAGNOSTIC, 13, -4.611543540441e-01, 1.040189564725e-04, 5.8994e+00, 2.3819e-01, + 2DIAGNOSTIC, 14, -4.611823267902e-01, 5.913145427061e-05, 6.1272e+00, 2.2777e-01, + 2DIAGNOSTIC, 15, -4.611842951243e-01, 3.402567294999e-05, 6.3579e+00, 2.3076e-01, + 2DIAGNOSTIC, 16, -4.611898457637e-01, 2.813389426544e-05, 6.5731e+00, 2.1516e-01, + 2DIAGNOSTIC, 17, -4.611946336561e-01, 2.162025858138e-05, 6.7368e+00, 1.6376e-01, + 2DIAGNOSTIC, 18, -4.611996956889e-01, 1.556879971917e-05, 6.9387e+00, 2.0182e-01, + 2DIAGNOSTIC, 19, -4.612058654975e-01, 1.056035390225e-05, 7.0866e+00, 1.4798e-01, + 2DIAGNOSTIC, 20, -4.612281081264e-01, 7.858396275623e-06, 7.2475e+00, 1.6089e-01, + 2DIAGNOSTIC, 21, -4.612363711049e-01, 6.977021323233e-06, 7.4760e+00, 2.2847e-01, + 2DIAGNOSTIC, 22, -4.612370264054e-01, 6.184456934032e-06, 7.6740e+00, 1.9796e-01, + 2DIAGNOSTIC, 23, -4.612390616473e-01, 5.463456340830e-06, 7.9324e+00, 2.5842e-01, + 2DIAGNOSTIC, 24, -4.612420248703e-01, 5.214358819373e-06, 8.2228e+00, 2.9046e-01, + 2DIAGNOSTIC, 25, -4.612420394235e-01, 4.656787264988e-06, 8.4448e+00, 2.2197e-01, + 2DIAGNOSTIC, 26, -4.612420445346e-01, 3.952581435901e-06, 8.6106e+00, 1.6576e-01, + 2DIAGNOSTIC, 27, -4.612420551075e-01, 3.159861485399e-06, 8.7851e+00, 1.7455e-01, + 2DIAGNOSTIC, 28, -4.612420914894e-01, 2.353197428216e-06, 8.9443e+00, 1.5915e-01, + 2DIAGNOSTIC, 29, -4.612421899656e-01, 1.608174162351e-06, 9.0872e+00, 1.4296e-01, + 2DIAGNOSTIC, 30, -4.612423814345e-01, 1.321413768948e-06, 9.2287e+00, 1.4143e-01, + 2DIAGNOSTIC, 31, -4.612426904870e-01, 1.200034829819e-06, 9.4197e+00, 1.9105e-01, + 2DIAGNOSTIC, 32, -4.612418231396e-01, 1.065220095887e-06, 9.7029e+00, 2.8323e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.967646845740e-01, 1.797693134862e+308, 1.2190e+01, 2.4868e+00, + 2DIAGNOSTIC, 2, -3.969216694778e-01, 1.797693134862e+308, 1.3313e+01, 1.1237e+00, + 2DIAGNOSTIC, 3, -3.969815867014e-01, 1.797693134862e+308, 1.5049e+01, 1.7361e+00, + 2DIAGNOSTIC, 4, -3.969861102395e-01, 1.797693134862e+308, 1.6065e+01, 1.0157e+00, + 2DIAGNOSTIC, 5, -3.970072361863e-01, 1.797693134862e+308, 1.7092e+01, 1.0269e+00, + 2DIAGNOSTIC, 6, -3.970267499465e-01, 1.797693134862e+308, 1.8014e+01, 9.2169e-01, + 2DIAGNOSTIC, 7, -3.970382329384e-01, 1.797693134862e+308, 1.9086e+01, 1.0720e+00, + 2DIAGNOSTIC, 8, -3.970419527323e-01, 1.797693134862e+308, 2.0096e+01, 1.0102e+00, + 2DIAGNOSTIC, 9, -3.970482381586e-01, 1.797693134862e+308, 2.1126e+01, 1.0296e+00, + 2DIAGNOSTIC, 10, -3.970619013807e-01, 3.738214437912e-05, 2.2234e+01, 1.1084e+00, + 2DIAGNOSTIC, 11, -3.972227719862e-01, 3.107053633804e-05, 2.3746e+01, 1.5122e+00, + 2DIAGNOSTIC, 12, -3.972274377701e-01, 3.257403645253e-05, 2.5484e+01, 1.7379e+00, + 2DIAGNOSTIC, 13, -3.972274361439e-01, 3.457251584499e-05, 2.6706e+01, 1.2221e+00, + 2DIAGNOSTIC, 14, -3.972272389010e-01, 3.370763464980e-05, 2.8007e+01, 1.3011e+00, + 2DIAGNOSTIC, 15, -3.972273280739e-01, 3.104639771978e-05, 2.9311e+01, 1.3036e+00, + 2DIAGNOSTIC, 16, -3.972272226705e-01, 2.680096682528e-05, 3.0573e+01, 1.2627e+00, + 2DIAGNOSTIC, 17, -3.972271011510e-01, 2.122867043516e-05, 3.1560e+01, 9.8699e-01, + 2DIAGNOSTIC, 18, -3.972268520304e-01, 1.472875652581e-05, 3.2624e+01, 1.0634e+00, + 2DIAGNOSTIC, 19, -3.972267660810e-01, 8.007196558725e-06, 3.3708e+01, 1.0846e+00, + 2DIAGNOSTIC, 20, -3.972268315318e-01, 1.697647150738e-06, 3.4809e+01, 1.1004e+00, + 2DIAGNOSTIC, 21, -3.972268013371e-01, 1.455931242608e-06, 3.6155e+01, 1.3460e+00, + 2DIAGNOSTIC, 22, -3.972265567551e-01, 1.385644961889e-06, 3.7186e+01, 1.0311e+00, + 2DIAGNOSTIC, 23, -3.972264784254e-01, 1.325209886771e-06, 3.8422e+01, 1.2357e+00, + 2DIAGNOSTIC, 24, -3.972263998881e-01, 1.266898448739e-06, 3.9635e+01, 1.2138e+00, + 2DIAGNOSTIC, 25, -3.972263331900e-01, 1.219254658485e-06, 4.0569e+01, 9.3385e-01, + 2DIAGNOSTIC, 26, -3.972261759621e-01, 1.173073331959e-06, 4.1786e+01, 1.2171e+00, + 2DIAGNOSTIC, 27, -3.972261148655e-01, 1.130620102541e-06, 4.2831e+01, 1.0450e+00, + 2DIAGNOSTIC, 28, -3.972261076399e-01, 1.089259215367e-06, 4.3959e+01, 1.1280e+00, + 2DIAGNOSTIC, 29, -3.972258172831e-01, 1.045725376771e-06, 4.5127e+01, 1.1676e+00, + 2DIAGNOSTIC, 30, -3.972257608608e-01, 1.010309429589e-06, 4.6271e+01, 1.1440e+00, + Elapsed time (stage 1): 4.7008e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.946584432095e-01, 1.797693134862e+308, 3.7078e-01, 3.7078e-01, + 1DIAGNOSTIC, 2, -9.049268820696e-01, 1.797693134862e+308, 5.3452e-01, 1.6374e-01, + 1DIAGNOSTIC, 3, -9.130013077070e-01, 1.797693134862e+308, 7.4779e-01, 2.1326e-01, + 1DIAGNOSTIC, 4, -9.197944066252e-01, 1.797693134862e+308, 9.6381e-01, 2.1602e-01, + 1DIAGNOSTIC, 5, -9.249327019245e-01, 1.797693134862e+308, 1.1491e+00, 1.8525e-01, + 1DIAGNOSTIC, 6, -9.295824354386e-01, 1.797693134862e+308, 1.2980e+00, 1.4895e-01, + 1DIAGNOSTIC, 7, -9.330294293881e-01, 1.797693134862e+308, 1.4438e+00, 1.4578e-01, + 1DIAGNOSTIC, 8, -9.361368771260e-01, 1.797693134862e+308, 1.5984e+00, 1.5462e-01, + 1DIAGNOSTIC, 9, -9.388124284546e-01, 1.797693134862e+308, 1.7501e+00, 1.5171e-01, + 1DIAGNOSTIC, 10, -9.411594227804e-01, 3.058657514420e-03, 1.9150e+00, 1.6491e-01, + 1DIAGNOSTIC, 11, -9.432496944216e-01, 2.294466417354e-03, 2.0798e+00, 1.6475e-01, + 1DIAGNOSTIC, 12, -9.451202301636e-01, 1.761032884932e-03, 2.3261e+00, 2.4632e-01, + 1DIAGNOSTIC, 13, -9.468042043021e-01, 1.379326695304e-03, 2.5254e+00, 1.9931e-01, + 1DIAGNOSTIC, 14, -9.482405108937e-01, 1.105790121483e-03, 2.7226e+00, 1.9721e-01, + 1DIAGNOSTIC, 15, -9.494500717704e-01, 8.960602311866e-04, 2.8899e+00, 1.6722e-01, + 1DIAGNOSTIC, 16, -9.506413076922e-01, 7.412515333347e-04, 3.0586e+00, 1.6878e-01, + 1DIAGNOSTIC, 17, -9.516486871583e-01, 6.156619773302e-04, 3.2019e+00, 1.4323e-01, + 1DIAGNOSTIC, 18, -9.525374525453e-01, 5.142845800792e-04, 3.3490e+00, 1.4714e-01, + 1DIAGNOSTIC, 19, -9.533203997777e-01, 4.309559017630e-04, 3.5223e+00, 1.7327e-01, + 1DIAGNOSTIC, 20, -9.540631590903e-01, 3.625892508721e-04, 3.6847e+00, 1.6238e-01, + 1DIAGNOSTIC, 21, -9.546791914034e-01, 3.058004442391e-04, 3.9023e+00, 2.1767e-01, + 1DIAGNOSTIC, 22, -9.553215376052e-01, 2.600328437342e-04, 4.0994e+00, 1.9710e-01, + 1DIAGNOSTIC, 23, -9.556223683847e-01, 2.198935636366e-04, 4.2989e+00, 1.9950e-01, + 1DIAGNOSTIC, 24, -9.559804016517e-01, 1.851225417554e-04, 4.4555e+00, 1.5654e-01, + 1DIAGNOSTIC, 25, -9.554878411778e-01, 1.443465606844e-04, 4.6287e+00, 1.7324e-01, + 1DIAGNOSTIC, 26, -9.560205341763e-01, 1.133614046163e-04, 4.7839e+00, 1.5522e-01, + 1DIAGNOSTIC, 27, -9.555847369892e-01, 8.016949175634e-05, 4.9608e+00, 1.7683e-01, + 1DIAGNOSTIC, 28, -9.558374648917e-01, 5.422185610442e-05, 5.1276e+00, 1.6682e-01, + 1DIAGNOSTIC, 29, -9.553941322963e-01, 2.848184489818e-05, 5.2764e+00, 1.4880e-01, + 1DIAGNOSTIC, 30, -9.559181933221e-01, 1.470781776256e-05, 5.5193e+00, 2.4297e-01, + 1DIAGNOSTIC, 31, -9.554824161707e-01, 1.998594907911e-06, 5.7527e+00, 2.3335e-01, + 1DIAGNOSTIC, 32, -9.560595740049e-01, 1.513840678140e-06, 5.9743e+00, 2.2161e-01, + 1DIAGNOSTIC, 33, -9.556380415955e-01, -2.879908507641e-07, 6.1406e+00, 1.6630e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.078774672758e-01, 1.797693134862e+308, 7.4069e+00, 1.2663e+00, + 1DIAGNOSTIC, 2, -9.120358357500e-01, 1.797693134862e+308, 8.3763e+00, 9.6941e-01, + 1DIAGNOSTIC, 3, -9.159234787468e-01, 1.797693134862e+308, 9.4899e+00, 1.1136e+00, + 1DIAGNOSTIC, 4, -9.191210332652e-01, 1.797693134862e+308, 1.0459e+01, 9.6928e-01, + 1DIAGNOSTIC, 5, -9.219002360831e-01, 1.797693134862e+308, 1.1599e+01, 1.1398e+00, + 1DIAGNOSTIC, 6, -9.243735986216e-01, 1.797693134862e+308, 1.2652e+01, 1.0530e+00, + 1DIAGNOSTIC, 7, -9.263680502576e-01, 1.797693134862e+308, 1.3697e+01, 1.0454e+00, + 1DIAGNOSTIC, 8, -9.280400110820e-01, 1.797693134862e+308, 1.4751e+01, 1.0536e+00, + 1DIAGNOSTIC, 9, -9.293475206020e-01, 1.797693134862e+308, 1.5787e+01, 1.0365e+00, + 1DIAGNOSTIC, 10, -9.304669727155e-01, 1.545587108544e-03, 1.6956e+01, 1.1684e+00, + 1DIAGNOSTIC, 11, -9.314394061409e-01, 1.192879695307e-03, 1.8052e+01, 1.0964e+00, + 1DIAGNOSTIC, 12, -9.322988886091e-01, 9.197381447089e-04, 1.9082e+01, 1.0300e+00, + 1DIAGNOSTIC, 13, -9.330651833056e-01, 7.150738523194e-04, 2.0296e+01, 1.2140e+00, + 1DIAGNOSTIC, 14, -9.337540775639e-01, 5.595270304002e-04, 2.1420e+01, 1.1235e+00, + 1DIAGNOSTIC, 15, -9.343764481482e-01, 4.428104515306e-04, 2.2482e+01, 1.0619e+00, + 1DIAGNOSTIC, 16, -9.349403335216e-01, 3.579826261983e-04, 2.3626e+01, 1.1442e+00, + 1DIAGNOSTIC, 17, -9.354661467595e-01, 2.953559459851e-04, 2.4824e+01, 1.1982e+00, + 1DIAGNOSTIC, 18, -9.359579572476e-01, 2.490761705161e-04, 2.5832e+01, 1.0077e+00, + 1DIAGNOSTIC, 19, -9.364076683847e-01, 2.127911277360e-04, 2.6932e+01, 1.1004e+00, + 1DIAGNOSTIC, 20, -9.368290537313e-01, 1.838665357819e-04, 2.8057e+01, 1.1243e+00, + 1DIAGNOSTIC, 21, -9.372084399466e-01, 1.602104589797e-04, 2.9041e+01, 9.8473e-01, + 1DIAGNOSTIC, 22, -9.375604887825e-01, 1.405566267100e-04, 3.0148e+01, 1.1070e+00, + 1DIAGNOSTIC, 23, -9.378722981656e-01, 1.237712966147e-04, 3.1191e+01, 1.0430e+00, + 1DIAGNOSTIC, 24, -9.381578378150e-01, 1.091890579087e-04, 3.2290e+01, 1.0986e+00, + 1DIAGNOSTIC, 25, -9.384193259358e-01, 9.633255922779e-05, 3.3366e+01, 1.0757e+00, + 1DIAGNOSTIC, 26, -9.386589978797e-01, 8.485970851838e-05, 3.4376e+01, 1.0109e+00, + 1DIAGNOSTIC, 27, -9.388919939437e-01, 7.484567148425e-05, 3.5505e+01, 1.1290e+00, + 1DIAGNOSTIC, 28, -9.390997492195e-01, 6.613897980720e-05, 3.6584e+01, 1.0782e+00, + 1DIAGNOSTIC, 29, -9.393026585060e-01, 5.868559918180e-05, 3.7694e+01, 1.1102e+00, + 1DIAGNOSTIC, 30, -9.394725638297e-01, 5.222814470895e-05, 3.8790e+01, 1.0958e+00, + 1DIAGNOSTIC, 31, -9.396374438341e-01, 4.663940838831e-05, 3.9865e+01, 1.0753e+00, + 1DIAGNOSTIC, 32, -9.397846542055e-01, 4.178084007451e-05, 4.0864e+01, 9.9930e-01, + 1DIAGNOSTIC, 33, -9.399337366135e-01, 3.755697871075e-05, 4.1983e+01, 1.1186e+00, + 1DIAGNOSTIC, 34, -9.400660991769e-01, 3.380826389807e-05, 4.3000e+01, 1.0167e+00, + 1DIAGNOSTIC, 35, -9.401902148686e-01, 3.047103016413e-05, 4.4196e+01, 1.1968e+00, + 1DIAGNOSTIC, 36, -9.403058296513e-01, 2.748019159466e-05, 4.5248e+01, 1.0516e+00, + 1DIAGNOSTIC, 37, -9.404130093697e-01, 2.488904412684e-05, 4.6333e+01, 1.0853e+00, + 1DIAGNOSTIC, 38, -9.405140844765e-01, 2.258818374156e-05, 4.7515e+01, 1.1820e+00, + 1DIAGNOSTIC, 39, -9.406081789042e-01, 2.062571480900e-05, 4.8556e+01, 1.0410e+00, + 1DIAGNOSTIC, 40, -9.406943649162e-01, 1.879763328157e-05, 4.9591e+01, 1.0349e+00, + 1DIAGNOSTIC, 41, -9.407758349484e-01, 1.715035059664e-05, 5.0730e+01, 1.1390e+00, + 1DIAGNOSTIC, 42, -9.408607618339e-01, 1.567913849874e-05, 5.1759e+01, 1.0286e+00, + 1DIAGNOSTIC, 43, -9.409324283515e-01, 1.439315127343e-05, 5.2882e+01, 1.1228e+00, + 1DIAGNOSTIC, 44, -9.409985152990e-01, 1.321686247866e-05, 5.3956e+01, 1.0740e+00, + 1DIAGNOSTIC, 45, -9.410614099339e-01, 1.214845314020e-05, 5.4972e+01, 1.0166e+00, + 1DIAGNOSTIC, 46, -9.411167791790e-01, 1.114855536021e-05, 5.6097e+01, 1.1252e+00, + 1DIAGNOSTIC, 47, -9.411684908514e-01, 1.020517277175e-05, 5.7177e+01, 1.0798e+00, + 1DIAGNOSTIC, 48, -9.412191617162e-01, 9.338375819085e-06, 5.8196e+01, 1.0192e+00, + 1DIAGNOSTIC, 49, -9.412650693933e-01, 8.534662152108e-06, 5.9382e+01, 1.1858e+00, + 1DIAGNOSTIC, 50, -9.413079292594e-01, 7.783054687845e-06, 6.0456e+01, 1.0742e+00, + 1DIAGNOSTIC, 51, -9.413492668835e-01, 7.097797769570e-06, 6.1510e+01, 1.0536e+00, + 1DIAGNOSTIC, 52, -9.413907469051e-01, 6.548731812158e-06, 6.2649e+01, 1.1390e+00, + 1DIAGNOSTIC, 53, -9.414271097761e-01, 6.062129770387e-06, 6.3733e+01, 1.0845e+00, + 1DIAGNOSTIC, 54, -9.414616699471e-01, 5.628650920214e-06, 6.4763e+01, 1.0295e+00, + 1DIAGNOSTIC, 55, -9.414899829385e-01, 5.225259989687e-06, 6.5801e+01, 1.0386e+00, + 1DIAGNOSTIC, 56, -9.415197095309e-01, 4.846726430464e-06, 6.6856e+01, 1.0542e+00, + 1DIAGNOSTIC, 57, -9.415495425040e-01, 4.499105858976e-06, 6.7961e+01, 1.1055e+00, + 1DIAGNOSTIC, 58, -9.415772330350e-01, 4.189736354618e-06, 6.9046e+01, 1.0844e+00, + 1DIAGNOSTIC, 59, -9.416034716352e-01, 3.908108928963e-06, 7.0112e+01, 1.0668e+00, + 1DIAGNOSTIC, 60, -9.416314835813e-01, 3.667033553419e-06, 7.1198e+01, 1.0858e+00, + 1DIAGNOSTIC, 61, -9.416560841104e-01, 3.455855578427e-06, 7.2276e+01, 1.0774e+00, + 1DIAGNOSTIC, 62, -9.416706125376e-01, 3.239601676430e-06, 7.3369e+01, 1.0938e+00, + 1DIAGNOSTIC, 63, -9.416907581528e-01, 3.037867977014e-06, 7.4490e+01, 1.1203e+00, + 1DIAGNOSTIC, 64, -9.417115327025e-01, 2.858310550476e-06, 7.5518e+01, 1.0288e+00, + 1DIAGNOSTIC, 65, -9.417326193002e-01, 2.683954898920e-06, 7.6610e+01, 1.0920e+00, + 1DIAGNOSTIC, 66, -9.417487364863e-01, 2.511336254989e-06, 7.7687e+01, 1.0767e+00, + 1DIAGNOSTIC, 67, -9.417654651136e-01, 2.358088257451e-06, 7.8709e+01, 1.0218e+00, + 1DIAGNOSTIC, 68, -9.417843131483e-01, 2.233833026357e-06, 7.9833e+01, 1.1240e+00, + 1DIAGNOSTIC, 69, -9.418009402325e-01, 2.127913264654e-06, 8.0876e+01, 1.0428e+00, + 1DIAGNOSTIC, 70, -9.418131118423e-01, 2.035765068091e-06, 8.2014e+01, 1.1381e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.967182366767e-01, 1.797693134862e+308, 9.0926e+01, 8.9120e+00, + 1DIAGNOSTIC, 2, -8.995108416522e-01, 1.797693134862e+308, 9.8863e+01, 7.9374e+00, + 1DIAGNOSTIC, 3, -9.022188060048e-01, 1.797693134862e+308, 1.0751e+02, 8.6516e+00, + 1DIAGNOSTIC, 4, -9.048947317707e-01, 1.797693134862e+308, 1.1577e+02, 8.2584e+00, + 1DIAGNOSTIC, 5, -9.070335323150e-01, 1.797693134862e+308, 1.2419e+02, 8.4211e+00, + 1DIAGNOSTIC, 6, -9.089589659951e-01, 1.797693134862e+308, 1.3243e+02, 8.2382e+00, + 1DIAGNOSTIC, 7, -9.106795800285e-01, 1.797693134862e+308, 1.4080e+02, 8.3627e+00, + 1DIAGNOSTIC, 8, -9.122146796552e-01, 1.797693134862e+308, 1.4915e+02, 8.3544e+00, + 1DIAGNOSTIC, 9, -9.135017815887e-01, 1.797693134862e+308, 1.5750e+02, 8.3487e+00, + 1DIAGNOSTIC, 10, -9.147741539439e-01, 1.266404534011e-03, 1.6565e+02, 8.1483e+00, + 1DIAGNOSTIC, 11, -9.158436377320e-01, 1.028799026401e-03, 1.7371e+02, 8.0651e+00, + 1DIAGNOSTIC, 12, -9.168029561914e-01, 8.357100260208e-04, 1.8185e+02, 8.1429e+00, + 1DIAGNOSTIC, 13, -9.175891095065e-01, 6.801647499000e-04, 1.9026e+02, 8.4032e+00, + 1DIAGNOSTIC, 14, -9.183199275576e-01, 5.606914339944e-04, 1.9881e+02, 8.5564e+00, + 1DIAGNOSTIC, 15, -9.190030655395e-01, 4.642982358365e-04, 2.0693e+02, 8.1110e+00, + 1DIAGNOSTIC, 16, -9.196429815955e-01, 3.870354518830e-04, 2.1522e+02, 8.2992e+00, + 1DIAGNOSTIC, 17, -9.202469377012e-01, 3.256001926750e-04, 2.2349e+02, 8.2666e+00, + 1DIAGNOSTIC, 18, -9.208183692475e-01, 2.772341717045e-04, 2.3174e+02, 8.2475e+00, + 1DIAGNOSTIC, 19, -9.213570739729e-01, 2.380107071303e-04, 2.4017e+02, 8.4293e+00, + 1DIAGNOSTIC, 20, -9.218764914696e-01, 2.083388069837e-04, 2.4856e+02, 8.3965e+00, + 1DIAGNOSTIC, 21, -9.223752892013e-01, 1.851895489149e-04, 2.5728e+02, 8.7167e+00, + 1DIAGNOSTIC, 22, -9.228521412952e-01, 1.670854286312e-04, 2.6587e+02, 8.5921e+00, + 1DIAGNOSTIC, 23, -9.233131624287e-01, 1.517237454551e-04, 2.7430e+02, 8.4257e+00, + 1DIAGNOSTIC, 24, -9.237503032356e-01, 1.384973595512e-04, 2.8284e+02, 8.5368e+00, + 1DIAGNOSTIC, 25, -9.241759873802e-01, 1.270677698632e-04, 2.9138e+02, 8.5419e+00, + 1DIAGNOSTIC, 26, -9.245825139740e-01, 1.170348900530e-04, 2.9985e+02, 8.4721e+00, + 1DIAGNOSTIC, 27, -9.249675072269e-01, 1.080704775875e-04, 3.0826e+02, 8.4058e+00, + 1DIAGNOSTIC, 28, -9.253370639036e-01, 9.997174550021e-05, 3.1626e+02, 8.0075e+00, + 1DIAGNOSTIC, 29, -9.256906492503e-01, 9.252800349069e-05, 3.2459e+02, 8.3269e+00, + 1DIAGNOSTIC, 30, -9.260243401779e-01, 8.564669645424e-05, 3.3284e+02, 8.2510e+00, + 1DIAGNOSTIC, 31, -9.263388585827e-01, 7.923802568589e-05, 3.4113e+02, 8.2906e+00, + 1DIAGNOSTIC, 32, -9.266335468306e-01, 7.320091076705e-05, 3.4953e+02, 8.4020e+00, + 1DIAGNOSTIC, 33, -9.268961826683e-01, 6.739355279822e-05, 3.5795e+02, 8.4159e+00, + 1DIAGNOSTIC, 34, -9.271350240279e-01, 6.170481956331e-05, 3.6637e+02, 8.4170e+00, + 1DIAGNOSTIC, 35, -9.273502420922e-01, 5.616887705302e-05, 3.7461e+02, 8.2432e+00, + 1DIAGNOSTIC, 36, -9.275487256722e-01, 5.082596998512e-05, 3.8316e+02, 8.5525e+00, + 1DIAGNOSTIC, 37, -9.277290979078e-01, 4.568960819221e-05, 3.9134e+02, 8.1778e+00, + 1DIAGNOSTIC, 38, -9.278943509398e-01, 4.085618112849e-05, 3.9987e+02, 8.5314e+00, + 1DIAGNOSTIC, 39, -9.280455154605e-01, 3.641334332610e-05, 4.0798e+02, 8.1042e+00, + 1DIAGNOSTIC, 40, -9.281880835930e-01, 3.243625537731e-05, 4.1605e+02, 8.0718e+00, + 1DIAGNOSTIC, 41, -9.283186584184e-01, 2.894793022029e-05, 4.2474e+02, 8.6949e+00, + 1DIAGNOSTIC, 42, -9.284443358002e-01, 2.599308390498e-05, 4.3309e+02, 8.3488e+00, + 1DIAGNOSTIC, 43, -9.285576471441e-01, 2.343348530934e-05, 4.4171e+02, 8.6197e+00, + 1DIAGNOSTIC, 44, -9.286653755060e-01, 2.122636306693e-05, 4.4997e+02, 8.2574e+00, + 1DIAGNOSTIC, 45, -9.287660164285e-01, 1.929827873051e-05, 4.5847e+02, 8.5021e+00, + 1DIAGNOSTIC, 46, -9.288643522764e-01, 1.764402524153e-05, 4.6690e+02, 8.4304e+00, + 1DIAGNOSTIC, 47, -9.289561611091e-01, 1.620325305579e-05, 4.7529e+02, 8.3868e+00, + 1DIAGNOSTIC, 48, -9.290434292709e-01, 1.494038136724e-05, 4.8289e+02, 7.6022e+00, + 1DIAGNOSTIC, 49, -9.291267732006e-01, 1.382066566846e-05, 4.9125e+02, 8.3623e+00, + 1DIAGNOSTIC, 50, -9.292086967398e-01, 1.285263141696e-05, 4.9940e+02, 8.1445e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.983572492660e-01, 1.797693134862e+308, 5.7027e+02, 7.0870e+01, + 1DIAGNOSTIC, 2, -8.994944953436e-01, 1.797693134862e+308, 6.4047e+02, 7.0201e+01, + 1DIAGNOSTIC, 3, -9.011985897731e-01, 1.797693134862e+308, 7.1137e+02, 7.0900e+01, + 1DIAGNOSTIC, 4, -9.028861353654e-01, 1.797693134862e+308, 7.8047e+02, 6.9101e+01, + 1DIAGNOSTIC, 5, -9.045350257761e-01, 1.797693134862e+308, 8.5083e+02, 7.0365e+01, + 1DIAGNOSTIC, 6, -9.060365208097e-01, 1.797693134862e+308, 9.2126e+02, 7.0421e+01, + 1DIAGNOSTIC, 7, -9.073635248894e-01, 1.797693134862e+308, 9.8984e+02, 6.8583e+01, + 1DIAGNOSTIC, 8, -9.085464394236e-01, 1.797693134862e+308, 1.0597e+03, 6.9891e+01, + 1DIAGNOSTIC, 9, -9.096086243792e-01, 1.797693134862e+308, 1.1306e+03, 7.0914e+01, + 1DIAGNOSTIC, 10, -9.105693237595e-01, 8.997652435598e-04, 1.1987e+03, 6.8036e+01, + 1DIAGNOSTIC, 11, -9.113603124708e-01, 7.694675121449e-04, 1.2674e+03, 6.8700e+01, + 1DIAGNOSTIC, 12, -9.120746671368e-01, 6.399562302064e-04, 1.3365e+03, 6.9134e+01, + 1DIAGNOSTIC, 13, -9.126404800850e-01, 5.270206739929e-04, 1.4023e+03, 6.5814e+01, + 1DIAGNOSTIC, 14, -9.131709381305e-01, 4.316948980804e-04, 1.4475e+03, 4.5170e+01, + 1DIAGNOSTIC, 15, -9.136823048761e-01, 3.544922146028e-04, 1.4924e+03, 4.4938e+01, + 1DIAGNOSTIC, 16, -9.141687543332e-01, 2.930998037104e-04, 1.5373e+03, 4.4896e+01, + 1DIAGNOSTIC, 17, -9.146247215959e-01, 2.446022572368e-04, 1.5853e+03, 4.8019e+01, + 1DIAGNOSTIC, 18, -9.150686637151e-01, 2.070490435392e-04, 1.6362e+03, 5.0869e+01, + 1DIAGNOSTIC, 19, -9.154681170491e-01, 1.782028605064e-04, 1.6944e+03, 5.8140e+01, + 1DIAGNOSTIC, 20, -9.158348106908e-01, 1.563554639530e-04, 1.7395e+03, 4.5104e+01, + Elapsed time (stage 2): 1740 + + +Total elapsed time: 1830 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:04 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:04 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:07 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:12 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:15 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:15 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18510 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:16 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:18 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:19 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18562 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:19 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:22 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:22 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18645 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:22 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18675 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:22 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:29 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:33 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:33 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:34 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:35 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:37 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:37 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:38 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:39 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:42 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:43 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:43 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:43 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:54 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:05 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC004 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:05 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC004 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:06 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC004 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:06 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19563 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:08 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:08 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19605 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:10 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:10 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC004_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 87.550 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/logs/proc_func_18-03-2024-11242.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:24 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC004 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/QC/sub-PNC004_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC004* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 87.583 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC004_ses-01 +========================reprocessing without filter=================== +sub-PNC004_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC004 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC004 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC004 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC004 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:35 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:35 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:49:50 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:52:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:52:15 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.68 (mm) at sub-brick 21 +++ Max delta displ in automask = 0.50 (mm) at sub-brick 9 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:05:14 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:05:33 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:07:52 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:10:09 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:12:26 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.255 -1.926 2.890 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 75.0 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = 0.034 -2.947 4.704 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.9 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:17:23 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:17:50 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55ba735d4a50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 62.072, -112.369] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ba7344b730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55ba735eb350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55ba735db600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [78.5956, 118.16, -130.715] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ba735dde40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55ba73de7f50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55ba73de6270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 62.072, -112.369] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ba735da640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55ba749121c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55ba73de5a00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [78.5956, 118.16, -130.715] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ba735e1390) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55ba7510c300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.871500440526e-01, 1.797693134862e+308, 4.4704e-02, 4.4704e-02, + 2DIAGNOSTIC, 2, -7.898468026081e-01, 1.797693134862e+308, 4.6002e-02, 1.2980e-03, + 2DIAGNOSTIC, 3, -7.948667146608e-01, 1.797693134862e+308, 4.7253e-02, 1.2510e-03, + 2DIAGNOSTIC, 4, -8.017604643570e-01, 1.797693134862e+308, 4.8537e-02, 1.2839e-03, + 2DIAGNOSTIC, 5, -8.135412668077e-01, 1.797693134862e+308, 4.9807e-02, 1.2701e-03, + 2DIAGNOSTIC, 6, -8.219378149202e-01, 1.797693134862e+308, 5.1321e-02, 1.5140e-03, + 2DIAGNOSTIC, 7, -8.287932664630e-01, 1.797693134862e+308, 5.2640e-02, 1.3189e-03, + 2DIAGNOSTIC, 8, -8.458573370485e-01, 1.797693134862e+308, 5.4382e-02, 1.7419e-03, + 2DIAGNOSTIC, 9, -8.555425743613e-01, 1.797693134862e+308, 5.7214e-02, 2.8329e-03, + 2DIAGNOSTIC, 10, -8.563011860033e-01, 6.118811001901e-03, 5.8720e-02, 1.5051e-03, + 2DIAGNOSTIC, 11, -8.558625968484e-01, 5.455934101900e-03, 6.0360e-02, 1.6401e-03, + 2DIAGNOSTIC, 12, -8.564347662948e-01, 4.516646095522e-03, 6.1762e-02, 1.4019e-03, + 2DIAGNOSTIC, 13, -8.561639079364e-01, 3.438558170952e-03, 6.3162e-02, 1.4000e-03, + 2DIAGNOSTIC, 14, -8.567297932294e-01, 2.381831269050e-03, 6.4609e-02, 1.4470e-03, + 2DIAGNOSTIC, 15, -8.571570464505e-01, 1.532892410148e-03, 6.6077e-02, 1.4679e-03, + 2DIAGNOSTIC, 16, -8.575706829581e-01, 8.441357610792e-04, 6.7513e-02, 1.4360e-03, + 2DIAGNOSTIC, 17, -8.580943452248e-01, 3.016677507246e-04, 6.8910e-02, 1.3971e-03, + 2DIAGNOSTIC, 18, -8.578640128264e-01, 1.060054070519e-04, 7.0350e-02, 1.4400e-03, + 2DIAGNOSTIC, 19, -8.594962986614e-01, 1.238219187420e-04, 7.2198e-02, 1.8480e-03, + 2DIAGNOSTIC, 20, -8.619845135306e-01, 1.828530881493e-04, 7.4102e-02, 1.9040e-03, + 2DIAGNOSTIC, 21, -8.629233843175e-01, 2.260747421441e-04, 7.5755e-02, 1.6530e-03, + 2DIAGNOSTIC, 22, -8.639667544843e-01, 2.697733657061e-04, 7.7151e-02, 1.3962e-03, + 2DIAGNOSTIC, 23, -8.627743613804e-01, 2.632383306571e-04, 7.8555e-02, 1.4038e-03, + 2DIAGNOSTIC, 24, -8.630686833713e-01, 2.452095729270e-04, 8.0001e-02, 1.4460e-03, + 2DIAGNOSTIC, 25, -8.665662682137e-01, 2.577308768912e-04, 8.1413e-02, 1.4119e-03, + 2DIAGNOSTIC, 26, -8.773409492752e-01, 3.880211467161e-04, 8.7183e-02, 5.7700e-03, + 2DIAGNOSTIC, 27, -8.773409351287e-01, 4.758163151327e-04, 8.8993e-02, 1.8101e-03, + 2DIAGNOSTIC, 28, -8.773418561751e-01, 5.120634662525e-04, 9.0694e-02, 1.7011e-03, + 2DIAGNOSTIC, 29, -8.773434125868e-01, 5.177832859391e-04, 9.2452e-02, 1.7581e-03, + 2DIAGNOSTIC, 30, -8.773460413599e-01, 5.005972255842e-04, 9.4220e-02, 1.7681e-03, + 2DIAGNOSTIC, 31, -8.773504777500e-01, 4.449672294949e-04, 9.5903e-02, 1.6830e-03, + 2DIAGNOSTIC, 32, -8.773579545007e-01, 3.624315734998e-04, 9.7939e-02, 2.0359e-03, + 2DIAGNOSTIC, 33, -8.773705262991e-01, 2.409881447281e-04, 1.0005e-01, 2.1131e-03, + 2DIAGNOSTIC, 34, -8.773915838242e-01, 1.075112699917e-04, 1.0166e-01, 1.6041e-03, + 2DIAGNOSTIC, 35, -8.774266944624e-01, 2.434613814460e-06, 1.0325e-01, 1.5912e-03, + 2DIAGNOSTIC, 36, -8.774842919067e-01, 3.347970555154e-06, 1.0488e-01, 1.6289e-03, + 2DIAGNOSTIC, 37, -8.775767415641e-01, 4.800037379050e-06, 1.0645e-01, 1.5740e-03, + 2DIAGNOSTIC, 38, -8.777232556286e-01, 7.075817860226e-06, 1.0804e-01, 1.5891e-03, + 2DIAGNOSTIC, 39, -8.779488148806e-01, 1.055169995738e-05, 1.0962e-01, 1.5779e-03, + 2DIAGNOSTIC, 40, -8.782698948300e-01, 1.557667807673e-05, 1.1107e-01, 1.4579e-03, + 2DIAGNOSTIC, 41, -8.768046654775e-01, 7.083857127502e-06, 1.1255e-01, 1.4789e-03, + 2DIAGNOSTIC, 42, -8.775064641878e-01, 4.377882506321e-06, 1.1401e-01, 1.4610e-03, + 2DIAGNOSTIC, 43, -8.775602111564e-01, 1.694910128563e-06, 1.1551e-01, 1.4970e-03, + 2DIAGNOSTIC, 44, -8.791377739610e-01, 1.091652168613e-05, 1.1717e-01, 1.6601e-03, + 2DIAGNOSTIC, 45, -8.816967069022e-01, 3.758535037073e-05, 1.1860e-01, 1.4310e-03, + 2DIAGNOSTIC, 46, -8.858080130842e-01, 8.928947038941e-05, 1.2072e-01, 2.1200e-03, + 2DIAGNOSTIC, 47, -8.872587209934e-01, 1.406494609199e-04, 1.2279e-01, 2.0630e-03, + 2DIAGNOSTIC, 48, -8.873253920466e-01, 1.779686639861e-04, 1.2424e-01, 1.4520e-03, + 2DIAGNOSTIC, 49, -8.883361558900e-01, 2.052705847580e-04, 1.2588e-01, 1.6432e-03, + 2DIAGNOSTIC, 50, -8.897379275880e-01, 2.230868082033e-04, 1.2737e-01, 1.4849e-03, + 2DIAGNOSTIC, 51, -8.884553722902e-01, 2.004341774465e-04, 1.2901e-01, 1.6460e-03, + 2DIAGNOSTIC, 52, -8.915114864733e-01, 1.838807677159e-04, 1.3135e-01, 2.3420e-03, + 2DIAGNOSTIC, 53, -8.916766058601e-01, 1.515216003792e-04, 1.3282e-01, 1.4610e-03, + 2DIAGNOSTIC, 54, -8.922300986211e-01, 1.188325646590e-04, 1.3427e-01, 1.4539e-03, + 2DIAGNOSTIC, 55, -8.924435837880e-01, 9.208266263041e-05, 1.3573e-01, 1.4632e-03, + 2DIAGNOSTIC, 56, -8.924610408075e-01, 8.166663914675e-05, 1.3716e-01, 1.4260e-03, + 2DIAGNOSTIC, 57, -8.924979233358e-01, 7.239324942731e-05, 1.3859e-01, 1.4360e-03, + 2DIAGNOSTIC, 58, -8.925595985174e-01, 5.701122674099e-05, 1.4068e-01, 2.0809e-03, + 2DIAGNOSTIC, 59, -8.925684437917e-01, 4.231314729155e-05, 1.4209e-01, 1.4131e-03, + 2DIAGNOSTIC, 60, -8.925732691126e-01, 3.218399309714e-05, 1.4354e-01, 1.4548e-03, + 2DIAGNOSTIC, 61, -8.925853601012e-01, 1.211505034112e-05, 1.4496e-01, 1.4162e-03, + 2DIAGNOSTIC, 62, -8.926218981850e-01, 7.962022616888e-06, 1.4662e-01, 1.6580e-03, + 2DIAGNOSTIC, 63, -8.927376086171e-01, 4.610621937785e-06, 1.4826e-01, 1.6389e-03, + 2DIAGNOSTIC, 64, -8.927512343068e-01, 3.830462352646e-06, 1.5063e-01, 2.3742e-03, + 2DIAGNOSTIC, 65, -8.927538939554e-01, 3.855305779687e-06, 1.5209e-01, 1.4639e-03, + 2DIAGNOSTIC, 66, -8.927667223683e-01, 3.713772440621e-06, 1.5398e-01, 1.8842e-03, + 2DIAGNOSTIC, 67, -8.927675504314e-01, 3.436916782590e-06, 1.5962e-01, 5.6379e-03, + 2DIAGNOSTIC, 68, -8.927675504079e-01, 3.171197053675e-06, 1.6508e-01, 5.4622e-03, + 2DIAGNOSTIC, 69, -8.927675504079e-01, 2.696636641902e-06, 1.6673e-01, 1.6470e-03, + 2DIAGNOSTIC, 70, -8.927675504079e-01, 2.052801239785e-06, 1.6837e-01, 1.6420e-03, + 2DIAGNOSTIC, 71, -8.927675504079e-01, 1.331741010581e-06, 1.7000e-01, 1.6279e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.946980164054e-01, 1.797693134862e+308, 2.1809e-01, 4.8098e-02, + 2DIAGNOSTIC, 2, -4.948218175516e-01, 1.797693134862e+308, 2.2073e-01, 2.6379e-03, + 2DIAGNOSTIC, 3, -4.966974867493e-01, 1.797693134862e+308, 2.2334e-01, 2.6069e-03, + 2DIAGNOSTIC, 4, -4.991925776321e-01, 1.797693134862e+308, 2.2578e-01, 2.4412e-03, + 2DIAGNOSTIC, 5, -5.014331916799e-01, 1.797693134862e+308, 2.2803e-01, 2.2480e-03, + 2DIAGNOSTIC, 6, -5.039437810843e-01, 1.797693134862e+308, 2.3037e-01, 2.3451e-03, + 2DIAGNOSTIC, 7, -5.062235925495e-01, 1.797693134862e+308, 2.3293e-01, 2.5549e-03, + 2DIAGNOSTIC, 8, -5.073668957446e-01, 1.797693134862e+308, 2.3540e-01, 2.4760e-03, + 2DIAGNOSTIC, 9, -5.138498615810e-01, 1.797693134862e+308, 2.3748e-01, 2.0719e-03, + 2DIAGNOSTIC, 10, -5.179144851382e-01, 2.882847561547e-03, 2.4014e-01, 2.6641e-03, + 2DIAGNOSTIC, 11, -5.219432213287e-01, 3.024676094144e-03, 2.4270e-01, 2.5630e-03, + 2DIAGNOSTIC, 12, -5.250998929570e-01, 3.023729107267e-03, 2.4537e-01, 2.6679e-03, + 2DIAGNOSTIC, 13, -5.315477961373e-01, 3.104504457356e-03, 2.4843e-01, 3.0560e-03, + 2DIAGNOSTIC, 14, -5.325125890629e-01, 3.021392606594e-03, 2.5110e-01, 2.6741e-03, + 2DIAGNOSTIC, 15, -5.345781683933e-01, 2.832371643797e-03, 2.5346e-01, 2.3599e-03, + 2DIAGNOSTIC, 16, -5.610087346126e-01, 3.399818189311e-03, 2.5613e-01, 2.6700e-03, + 2DIAGNOSTIC, 17, -5.848277104311e-01, 4.391919975504e-03, 2.5838e-01, 2.2521e-03, + 2DIAGNOSTIC, 18, -5.959651331131e-01, 5.206819321582e-03, 2.6067e-01, 2.2860e-03, + 2DIAGNOSTIC, 19, -6.382271932105e-01, 6.809332145170e-03, 2.6322e-01, 2.5530e-03, + 2DIAGNOSTIC, 20, -6.718234489915e-01, 8.546821818815e-03, 2.6698e-01, 3.7580e-03, + 2DIAGNOSTIC, 21, -6.728594684525e-01, 9.398186697853e-03, 2.6931e-01, 2.3301e-03, + 2DIAGNOSTIC, 22, -6.779280078271e-01, 9.485304360850e-03, 2.7203e-01, 2.7211e-03, + 2DIAGNOSTIC, 23, -6.795637399926e-01, 8.872744822459e-03, 2.7548e-01, 3.4471e-03, + 2DIAGNOSTIC, 24, -6.814772057085e-01, 7.553752761075e-03, 2.7786e-01, 2.3792e-03, + 2DIAGNOSTIC, 25, -6.826525097566e-01, 5.704126839282e-03, 2.8024e-01, 2.3799e-03, + 2DIAGNOSTIC, 26, -6.831945960754e-01, 4.010234594578e-03, 2.8262e-01, 2.3808e-03, + 2DIAGNOSTIC, 27, -6.837959082801e-01, 2.551056766508e-03, 2.8527e-01, 2.6569e-03, + 2DIAGNOSTIC, 28, -6.845687319589e-01, 1.170858392670e-03, 2.8915e-01, 3.8719e-03, + 2DIAGNOSTIC, 29, -6.848640554020e-01, 4.947036487454e-04, 2.9175e-01, 2.6088e-03, + 2DIAGNOSTIC, 30, -6.856527376657e-01, 3.824264978246e-04, 2.9404e-01, 2.2879e-03, + 2DIAGNOSTIC, 31, -6.859903179563e-01, 2.622931744999e-04, 2.9634e-01, 2.2950e-03, + 2DIAGNOSTIC, 32, -6.868199164897e-01, 2.146097367240e-04, 2.9860e-01, 2.2600e-03, + 2DIAGNOSTIC, 33, -6.874096116070e-01, 1.815680526339e-04, 3.0109e-01, 2.4910e-03, + 2DIAGNOSTIC, 34, -6.878325770021e-01, 1.660075965203e-04, 3.0331e-01, 2.2168e-03, + 2DIAGNOSTIC, 35, -6.891813109908e-01, 1.699954418388e-04, 3.0587e-01, 2.5659e-03, + 2DIAGNOSTIC, 36, -6.899824412346e-01, 1.748253270600e-04, 3.0874e-01, 2.8679e-03, + 2DIAGNOSTIC, 37, -6.909652688302e-01, 1.827080578204e-04, 3.1253e-01, 3.7920e-03, + 2DIAGNOSTIC, 38, -6.912307473043e-01, 1.856137995538e-04, 3.1481e-01, 2.2831e-03, + 2DIAGNOSTIC, 39, -6.917342259870e-01, 1.803423488636e-04, 3.1736e-01, 2.5420e-03, + 2DIAGNOSTIC, 40, -6.919403962313e-01, 1.697358140679e-04, 3.1961e-01, 2.2509e-03, + 2DIAGNOSTIC, 41, -6.920520358236e-01, 1.484200924445e-04, 3.2188e-01, 2.2719e-03, + 2DIAGNOSTIC, 42, -6.921573521234e-01, 1.244567867472e-04, 3.2438e-01, 2.5010e-03, + 2DIAGNOSTIC, 43, -6.921180783143e-01, 9.596306472745e-05, 3.2721e-01, 2.8279e-03, + 2DIAGNOSTIC, 44, -6.922631819417e-01, 6.558382018308e-05, 3.2971e-01, 2.5029e-03, + 2DIAGNOSTIC, 45, -6.922265854963e-01, 4.373985077608e-05, 3.3217e-01, 2.4619e-03, + 2DIAGNOSTIC, 46, -6.923929076040e-01, 2.829319272712e-05, 3.3495e-01, 2.7769e-03, + 2DIAGNOSTIC, 47, -6.925597885142e-01, 2.207484194500e-05, 3.3748e-01, 2.5320e-03, + 2DIAGNOSTIC, 48, -6.926991235164e-01, 1.781291521458e-05, 3.4004e-01, 2.5601e-03, + 2DIAGNOSTIC, 49, -6.927011012654e-01, 1.675433444278e-05, 3.4228e-01, 2.2428e-03, + 2DIAGNOSTIC, 50, -6.927054328359e-01, 1.612687429716e-05, 3.4453e-01, 2.2449e-03, + 2DIAGNOSTIC, 51, -6.927184334538e-01, 1.513533883086e-05, 3.4679e-01, 2.2619e-03, + 2DIAGNOSTIC, 52, -6.927389360661e-01, 1.387705229628e-05, 3.4929e-01, 2.5001e-03, + 2DIAGNOSTIC, 53, -6.925765179536e-01, 9.647765884913e-06, 3.5182e-01, 2.5260e-03, + 2DIAGNOSTIC, 54, -6.925930188959e-01, 6.159884648492e-06, 3.5525e-01, 3.4349e-03, + 2DIAGNOSTIC, 55, -6.925952263208e-01, 1.979329246959e-06, 3.5839e-01, 3.1419e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.144261271083e-01, 1.797693134862e+308, 4.2616e-01, 6.7766e-02, + 2DIAGNOSTIC, 2, -5.150509282021e-01, 1.797693134862e+308, 4.3786e-01, 1.1703e-02, + 2DIAGNOSTIC, 3, -5.155138840630e-01, 1.797693134862e+308, 4.4998e-01, 1.2116e-02, + 2DIAGNOSTIC, 4, -5.158069279104e-01, 1.797693134862e+308, 4.6196e-01, 1.1978e-02, + 2DIAGNOSTIC, 5, -5.160408551768e-01, 1.797693134862e+308, 4.7419e-01, 1.2231e-02, + 2DIAGNOSTIC, 6, -5.164112460529e-01, 1.797693134862e+308, 4.8627e-01, 1.2084e-02, + 2DIAGNOSTIC, 7, -5.166885426179e-01, 1.797693134862e+308, 4.9828e-01, 1.2004e-02, + 2DIAGNOSTIC, 8, -5.171335163936e-01, 1.797693134862e+308, 5.1623e-01, 1.7956e-02, + 2DIAGNOSTIC, 9, -5.172777552214e-01, 1.797693134862e+308, 5.2932e-01, 1.3090e-02, + 2DIAGNOSTIC, 10, -5.174823517470e-01, 3.672129414739e-04, 5.4696e-01, 1.7640e-02, + 2DIAGNOSTIC, 11, -5.174679487938e-01, 2.894036414993e-04, 5.5857e-01, 1.1605e-02, + 2DIAGNOSTIC, 12, -5.178703913357e-01, 2.456146634642e-04, 5.7005e-01, 1.1484e-02, + 2DIAGNOSTIC, 13, -5.184394823729e-01, 2.295892557631e-04, 5.8191e-01, 1.1858e-02, + 2DIAGNOSTIC, 14, -5.186627542358e-01, 2.149534720700e-04, 5.9370e-01, 1.1787e-02, + 2DIAGNOSTIC, 15, -5.187210115058e-01, 1.936867763759e-04, 6.0587e-01, 1.2175e-02, + 2DIAGNOSTIC, 16, -5.188280960266e-01, 1.742038678752e-04, 6.1781e-01, 1.1934e-02, + 2DIAGNOSTIC, 17, -5.190746284766e-01, 1.576072356035e-04, 6.3677e-01, 1.8961e-02, + 2DIAGNOSTIC, 18, -5.191897314187e-01, 1.450038018276e-04, 6.5058e-01, 1.3818e-02, + 2DIAGNOSTIC, 19, -5.191876017719e-01, 1.244499469397e-04, 6.6302e-01, 1.2436e-02, + 2DIAGNOSTIC, 20, -5.192412918798e-01, 1.021337283962e-04, 6.7556e-01, 1.2537e-02, + 2DIAGNOSTIC, 21, -5.192513744405e-01, 7.237646242896e-05, 6.8947e-01, 1.3909e-02, + 2DIAGNOSTIC, 22, -5.192580234895e-01, 4.849577979510e-05, 7.0209e-01, 1.2621e-02, + 2DIAGNOSTIC, 23, -5.192715180317e-01, 3.606023187958e-05, 7.1391e-01, 1.1827e-02, + 2DIAGNOSTIC, 24, -5.192995890182e-01, 2.722949107158e-05, 7.2574e-01, 1.1826e-02, + 2DIAGNOSTIC, 25, -5.194095437798e-01, 2.037519723604e-05, 7.4220e-01, 1.6457e-02, + 2DIAGNOSTIC, 26, -5.194616184216e-01, 1.542943321122e-05, 7.6649e-01, 2.4293e-02, + 2DIAGNOSTIC, 27, -5.194615075635e-01, 1.447384713614e-05, 7.7794e-01, 1.1452e-02, + 2DIAGNOSTIC, 28, -5.194654032477e-01, 1.472255544525e-05, 7.9097e-01, 1.3024e-02, + 2DIAGNOSTIC, 29, -5.194664824125e-01, 1.362287116023e-05, 8.0286e-01, 1.1898e-02, + 2DIAGNOSTIC, 30, -5.194664670864e-01, 1.235524886949e-05, 8.1695e-01, 1.4083e-02, + 2DIAGNOSTIC, 31, -5.194751350140e-01, 1.041869985909e-05, 8.2982e-01, 1.2873e-02, + 2DIAGNOSTIC, 32, -5.194660507249e-01, 7.694442274817e-06, 8.4289e-01, 1.3068e-02, + 2DIAGNOSTIC, 33, -5.194616361130e-01, 4.679018437599e-06, 8.5549e-01, 1.2600e-02, + 2DIAGNOSTIC, 34, -5.194566372209e-01, 1.822341662600e-06, 8.6627e-01, 1.0780e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.368545036184e-01, 1.797693134862e+308, 1.0392e+00, 1.7293e-01, + Elapsed time (stage 0): 1.0673e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -1.013724298002e+00, 1.797693134862e+308, 3.7987e-02, 3.7986e-02, + 2DIAGNOSTIC, 2, -1.015775295984e+00, 1.797693134862e+308, 3.9781e-02, 1.7939e-03, + 2DIAGNOSTIC, 3, -1.016168027128e+00, 1.797693134862e+308, 4.1340e-02, 1.5590e-03, + 2DIAGNOSTIC, 4, -1.018926251741e+00, 1.797693134862e+308, 4.3250e-02, 1.9100e-03, + 2DIAGNOSTIC, 5, -1.020182260790e+00, 1.797693134862e+308, 4.4846e-02, 1.5960e-03, + 2DIAGNOSTIC, 6, -1.022278908320e+00, 1.797693134862e+308, 4.6828e-02, 1.9820e-03, + 2DIAGNOSTIC, 7, -1.027683171516e+00, 1.797693134862e+308, 4.8374e-02, 1.5461e-03, + 2DIAGNOSTIC, 8, -1.043017015272e+00, 1.797693134862e+308, 5.0021e-02, 1.6470e-03, + 2DIAGNOSTIC, 9, -1.049157440297e+00, 1.797693134862e+308, 5.1376e-02, 1.3552e-03, + 2DIAGNOSTIC, 10, -1.049785740728e+00, 2.451019280352e-03, 5.3697e-02, 2.3210e-03, + 2DIAGNOSTIC, 11, -1.051943085482e+00, 2.469403040470e-03, 5.5553e-02, 1.8561e-03, + 2DIAGNOSTIC, 12, -1.054372879046e+00, 2.364730377966e-03, 5.7131e-02, 1.5779e-03, + 2DIAGNOSTIC, 13, -1.053224599549e+00, 2.040044087424e-03, 5.8645e-02, 1.5140e-03, + 2DIAGNOSTIC, 14, -1.055848299200e+00, 1.683220368469e-03, 5.9929e-02, 1.2841e-03, + 2DIAGNOSTIC, 15, -1.055564597483e+00, 1.242402619931e-03, 6.1432e-02, 1.5030e-03, + 2DIAGNOSTIC, 16, -1.061820403724e+00, 8.884356027832e-04, 6.3156e-02, 1.7240e-03, + 2DIAGNOSTIC, 17, -1.062579521016e+00, 5.859312476220e-04, 6.4638e-02, 1.4820e-03, + 2DIAGNOSTIC, 18, -1.064484064190e+00, 5.240383349728e-04, 6.6203e-02, 1.5652e-03, + 2DIAGNOSTIC, 19, -1.064209970386e+00, 5.056110398932e-04, 6.7503e-02, 1.2999e-03, + 2DIAGNOSTIC, 20, -1.065531923926e+00, 4.683214796623e-04, 6.9172e-02, 1.6692e-03, + 2DIAGNOSTIC, 21, -1.067049136098e+00, 4.367611006035e-04, 7.0657e-02, 1.4851e-03, + 2DIAGNOSTIC, 22, -1.067013062162e+00, 3.969211578365e-04, 7.1931e-02, 1.2739e-03, + 2DIAGNOSTIC, 23, -1.065422534811e+00, 2.916831614816e-04, 7.3226e-02, 1.2951e-03, + 2DIAGNOSTIC, 24, -1.066750161711e+00, 2.146417365354e-04, 7.4837e-02, 1.6110e-03, + 2DIAGNOSTIC, 25, -1.066717644289e+00, 1.180013913210e-04, 7.6375e-02, 1.5371e-03, + 2DIAGNOSTIC, 26, -1.067189598410e+00, 8.763458051438e-05, 7.8714e-02, 2.3398e-03, + 2DIAGNOSTIC, 27, -1.067228876678e+00, 5.915378033363e-05, 8.0019e-02, 1.3051e-03, + 2DIAGNOSTIC, 28, -1.067516702421e+00, 4.919040989945e-05, 8.1354e-02, 1.3349e-03, + 2DIAGNOSTIC, 29, -1.067892041427e+00, 3.599400976021e-05, 8.2701e-02, 1.3471e-03, + 2DIAGNOSTIC, 30, -1.069394734728e+00, 4.510236643151e-05, 8.4005e-02, 1.3039e-03, + 2DIAGNOSTIC, 31, -1.069691477710e+00, 6.492473631779e-05, 8.5357e-02, 1.3521e-03, + 2DIAGNOSTIC, 32, -1.071709144366e+00, 9.477279122778e-05, 8.6731e-02, 1.3740e-03, + 2DIAGNOSTIC, 33, -1.073162992340e+00, 1.122218616690e-04, 8.8690e-02, 1.9581e-03, + 2DIAGNOSTIC, 34, -1.073263495385e+00, 1.292546851143e-04, 9.0193e-02, 1.5030e-03, + 2DIAGNOSTIC, 35, -1.073384564614e+00, 1.338802361367e-04, 9.1989e-02, 1.7960e-03, + 2DIAGNOSTIC, 36, -1.073611631618e+00, 1.309250498759e-04, 9.3767e-02, 1.7788e-03, + 2DIAGNOSTIC, 37, -1.074029260801e+00, 1.189187225662e-04, 9.6313e-02, 2.5461e-03, + 2DIAGNOSTIC, 38, -1.073746569669e+00, 9.615995774511e-05, 9.8089e-02, 1.7760e-03, + 2DIAGNOSTIC, 39, -1.074065811878e+00, 7.031721584011e-05, 9.9484e-02, 1.3950e-03, + 2DIAGNOSTIC, 40, -1.074556549266e+00, 5.277154037558e-05, 1.0191e-01, 2.4271e-03, + 2DIAGNOSTIC, 41, -1.074599474949e+00, 3.297704984522e-05, 1.0323e-01, 1.3218e-03, + 2DIAGNOSTIC, 42, -1.074782158051e+00, 2.491969260456e-05, 1.0457e-01, 1.3402e-03, + 2DIAGNOSTIC, 43, -1.074934671880e+00, 2.501905241960e-05, 1.0594e-01, 1.3671e-03, + 2DIAGNOSTIC, 44, -1.075057172071e+00, 2.414629249554e-05, 1.0728e-01, 1.3349e-03, + 2DIAGNOSTIC, 45, -1.075276970721e+00, 2.302176237123e-05, 1.0903e-01, 1.7540e-03, + 2DIAGNOSTIC, 46, -1.075434967774e+00, 2.196760309358e-05, 1.1081e-01, 1.7788e-03, + 2DIAGNOSTIC, 47, -1.075512890166e+00, 2.184502267267e-05, 1.1213e-01, 1.3242e-03, + 2DIAGNOSTIC, 48, -1.075670870508e+00, 1.898818320664e-05, 1.1367e-01, 1.5371e-03, + 2DIAGNOSTIC, 49, -1.075807260038e+00, 1.690564809301e-05, 1.1548e-01, 1.8120e-03, + 2DIAGNOSTIC, 50, -1.075854899474e+00, 1.622555043670e-05, 1.1687e-01, 1.3850e-03, + 2DIAGNOSTIC, 51, -1.075921891790e+00, 1.464401159804e-05, 1.1842e-01, 1.5490e-03, + 2DIAGNOSTIC, 52, -1.075947444849e+00, 1.284817504392e-05, 1.1976e-01, 1.3418e-03, + 2DIAGNOSTIC, 53, -1.075986806688e+00, 1.091272791772e-05, 1.2109e-01, 1.3289e-03, + 2DIAGNOSTIC, 54, -1.076036343985e+00, 8.884453055177e-06, 1.2267e-01, 1.5850e-03, + 2DIAGNOSTIC, 55, -1.076100085580e+00, 7.499886907146e-06, 1.2463e-01, 1.9600e-03, + 2DIAGNOSTIC, 56, -1.076144101138e+00, 6.466200909924e-06, 1.2662e-01, 1.9860e-03, + 2DIAGNOSTIC, 57, -1.076146736616e+00, 5.269071470491e-06, 1.2794e-01, 1.3201e-03, + 2DIAGNOSTIC, 58, -1.076168325044e+00, 4.481925917177e-06, 1.2948e-01, 1.5399e-03, + 2DIAGNOSTIC, 59, -1.076174600559e+00, 3.985333033831e-06, 1.3080e-01, 1.3180e-03, + 2DIAGNOSTIC, 60, -1.076191588714e+00, 3.452577721923e-06, 1.3210e-01, 1.3020e-03, + 2DIAGNOSTIC, 61, -1.076236031094e+00, 3.143113765747e-06, 1.3408e-01, 1.9820e-03, + 2DIAGNOSTIC, 62, -1.076238345885e+00, 2.709012107895e-06, 1.3542e-01, 1.3430e-03, + 2DIAGNOSTIC, 63, -1.076244880591e+00, 2.274508386767e-06, 1.3677e-01, 1.3521e-03, + 2DIAGNOSTIC, 64, -1.076257903523e+00, 1.941165879333e-06, 1.3813e-01, 1.3599e-03, + 2DIAGNOSTIC, 65, -1.076288740692e+00, 1.861704847960e-06, 1.3946e-01, 1.3289e-03, + 2DIAGNOSTIC, 66, -1.076317443953e+00, 1.942605435651e-06, 1.4099e-01, 1.5230e-03, + 2DIAGNOSTIC, 67, -1.076330116272e+00, 1.938947553532e-06, 1.4322e-01, 2.2290e-03, + 2DIAGNOSTIC, 68, -1.076348109521e+00, 1.954401555669e-06, 1.4475e-01, 1.5349e-03, + 2DIAGNOSTIC, 69, -1.076349868929e+00, 1.857047967936e-06, 1.4609e-01, 1.3380e-03, + 2DIAGNOSTIC, 70, -1.076373840848e+00, 1.779056667107e-06, 1.4763e-01, 1.5411e-03, + 2DIAGNOSTIC, 71, -1.076376980397e+00, 1.751871115157e-06, 1.4918e-01, 1.5481e-03, + 2DIAGNOSTIC, 72, -1.076387926171e+00, 1.650446079823e-06, 1.5094e-01, 1.7672e-03, + 2DIAGNOSTIC, 73, -1.076411903706e+00, 1.547999990499e-06, 1.5333e-01, 2.3890e-03, + 2DIAGNOSTIC, 74, -1.076411915225e+00, 1.384771581212e-06, 1.5832e-01, 4.9870e-03, + 2DIAGNOSTIC, 75, -1.076411915223e+00, 1.242682677479e-06, 1.6306e-01, 4.7400e-03, + 2DIAGNOSTIC, 76, -1.076411915223e+00, 1.126796907037e-06, 1.6489e-01, 1.8289e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.328863258573e-01, 1.797693134862e+308, 2.0996e-01, 4.5075e-02, + 2DIAGNOSTIC, 2, -7.329815607166e-01, 1.797693134862e+308, 2.1270e-01, 2.7320e-03, + 2DIAGNOSTIC, 3, -7.342078031124e-01, 1.797693134862e+308, 2.1550e-01, 2.8009e-03, + 2DIAGNOSTIC, 4, -7.364817494778e-01, 1.797693134862e+308, 2.1822e-01, 2.7189e-03, + 2DIAGNOSTIC, 5, -7.414325511723e-01, 1.797693134862e+308, 2.2055e-01, 2.3370e-03, + 2DIAGNOSTIC, 6, -7.460986641043e-01, 1.797693134862e+308, 2.2308e-01, 2.5289e-03, + 2DIAGNOSTIC, 7, -7.539047985728e-01, 1.797693134862e+308, 2.2566e-01, 2.5749e-03, + 2DIAGNOSTIC, 8, -7.570476529005e-01, 1.797693134862e+308, 2.2889e-01, 3.2289e-03, + 2DIAGNOSTIC, 9, -7.608314036576e-01, 1.797693134862e+308, 2.3266e-01, 3.7730e-03, + 2DIAGNOSTIC, 10, -7.632695556997e-01, 3.038162250908e-03, 2.3748e-01, 4.8180e-03, + 2DIAGNOSTIC, 11, -7.629549857259e-01, 2.804120507655e-03, 2.4050e-01, 3.0239e-03, + 2DIAGNOSTIC, 12, -7.630058220065e-01, 2.364080835103e-03, 2.4382e-01, 3.3200e-03, + 2DIAGNOSTIC, 13, -7.631727403982e-01, 1.820860877502e-03, 2.4661e-01, 2.7931e-03, + 2DIAGNOSTIC, 14, -7.634144958199e-01, 1.258141197036e-03, 2.4898e-01, 2.3699e-03, + 2DIAGNOSTIC, 15, -7.638885805207e-01, 7.926348418362e-04, 2.5174e-01, 2.7530e-03, + 2DIAGNOSTIC, 16, -7.641108309922e-01, 4.259578580211e-04, 2.5455e-01, 2.8119e-03, + 2DIAGNOSTIC, 17, -7.640001646163e-01, 2.348355140635e-04, 2.5741e-01, 2.8658e-03, + 2DIAGNOSTIC, 18, -7.640723372869e-01, 1.095194017654e-04, 2.5989e-01, 2.4710e-03, + 2DIAGNOSTIC, 19, -7.642146941169e-01, 6.387658714525e-05, 2.6230e-01, 2.4190e-03, + 2DIAGNOSTIC, 20, -7.644366526106e-01, 6.711540264148e-05, 2.6507e-01, 2.7659e-03, + 2DIAGNOSTIC, 21, -7.646755828662e-01, 6.251395787703e-05, 2.6877e-01, 3.6950e-03, + 2DIAGNOSTIC, 22, -7.647060379652e-01, 5.411650497995e-05, 2.7155e-01, 2.7831e-03, + 2DIAGNOSTIC, 23, -7.646503538002e-01, 4.346119170921e-05, 2.7407e-01, 2.5210e-03, + 2DIAGNOSTIC, 24, -7.646069068294e-01, 3.270445383348e-05, 2.7658e-01, 2.5101e-03, + 2DIAGNOSTIC, 25, -7.645831490018e-01, 2.647816612564e-05, 2.7939e-01, 2.8141e-03, + 2DIAGNOSTIC, 26, -7.645581340038e-01, 2.122407287364e-05, 2.8189e-01, 2.4970e-03, + 2DIAGNOSTIC, 27, -7.644881587129e-01, 1.199501659690e-05, 2.8439e-01, 2.4998e-03, + 2DIAGNOSTIC, 28, -7.646099014260e-01, 5.074432669797e-06, 2.8721e-01, 2.8229e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.648743508511e-01, 1.797693134862e+308, 3.5644e-01, 6.9231e-02, + 2DIAGNOSTIC, 2, -5.653416322953e-01, 1.797693134862e+308, 3.7029e-01, 1.3847e-02, + 2DIAGNOSTIC, 3, -5.662737479961e-01, 1.797693134862e+308, 3.8481e-01, 1.4520e-02, + 2DIAGNOSTIC, 4, -5.675337565031e-01, 1.797693134862e+308, 3.9871e-01, 1.3903e-02, + 2DIAGNOSTIC, 5, -5.688814744524e-01, 1.797693134862e+308, 4.1300e-01, 1.4287e-02, + 2DIAGNOSTIC, 6, -5.700539090923e-01, 1.797693134862e+308, 4.2677e-01, 1.3773e-02, + 2DIAGNOSTIC, 7, -5.715044129164e-01, 1.797693134862e+308, 4.4029e-01, 1.3514e-02, + 2DIAGNOSTIC, 8, -5.731318561833e-01, 1.797693134862e+308, 4.5566e-01, 1.5369e-02, + 2DIAGNOSTIC, 9, -5.746236038625e-01, 1.797693134862e+308, 4.7425e-01, 1.8592e-02, + 2DIAGNOSTIC, 10, -5.751889673719e-01, 1.264548737175e-03, 4.8962e-01, 1.5374e-02, + 2DIAGNOSTIC, 11, -5.753229458283e-01, 1.134329522536e-03, 5.0258e-01, 1.2955e-02, + 2DIAGNOSTIC, 12, -5.757467377519e-01, 9.616532064344e-04, 5.1464e-01, 1.2065e-02, + 2DIAGNOSTIC, 13, -5.760173578845e-01, 7.736909815175e-04, 5.2658e-01, 1.1932e-02, + 2DIAGNOSTIC, 14, -5.766310705642e-01, 6.080695556995e-04, 5.4222e-01, 1.5645e-02, + 2DIAGNOSTIC, 15, -5.772327381139e-01, 4.735820060375e-04, 5.6124e-01, 1.9019e-02, + 2DIAGNOSTIC, 16, -5.773186555178e-01, 3.516238874922e-04, 5.7513e-01, 1.3895e-02, + 2DIAGNOSTIC, 17, -5.774910203307e-01, 2.589586583963e-04, 5.8827e-01, 1.3139e-02, + 2DIAGNOSTIC, 18, -5.775878937144e-01, 1.994630854135e-04, 6.0232e-01, 1.4051e-02, + 2DIAGNOSTIC, 19, -5.776698618717e-01, 1.685071063479e-04, 6.1782e-01, 1.5495e-02, + 2DIAGNOSTIC, 20, -5.776918582347e-01, 1.395980384521e-04, 6.3028e-01, 1.2463e-02, + 2DIAGNOSTIC, 21, -5.777284349428e-01, 1.046052637444e-04, 6.4375e-01, 1.3464e-02, + 2DIAGNOSTIC, 22, -5.777870775487e-01, 7.420209395470e-05, 6.5872e-01, 1.4969e-02, + 2DIAGNOSTIC, 23, -5.778060191423e-01, 4.562392591054e-05, 6.7227e-01, 1.3556e-02, + 2DIAGNOSTIC, 24, -5.778109287932e-01, 2.776065774379e-05, 6.8937e-01, 1.7095e-02, + 2DIAGNOSTIC, 25, -5.778107763615e-01, 2.079185941393e-05, 7.0374e-01, 1.4377e-02, + 2DIAGNOSTIC, 26, -5.778119023172e-01, 1.412749816773e-05, 7.1839e-01, 1.4651e-02, + 2DIAGNOSTIC, 27, -5.778024301591e-01, 9.682620866480e-06, 7.3090e-01, 1.2509e-02, + 2DIAGNOSTIC, 28, -5.778070308325e-01, 6.517056521882e-06, 7.4340e-01, 1.2494e-02, + 2DIAGNOSTIC, 29, -5.778117765752e-01, 4.548804181770e-06, 7.5727e-01, 1.3870e-02, + 2DIAGNOSTIC, 30, -5.778199061980e-01, 2.878455194269e-06, 7.7100e-01, 1.3729e-02, + 2DIAGNOSTIC, 31, -5.778221279865e-01, 1.740368988923e-06, 7.8466e-01, 1.3660e-02, + 2DIAGNOSTIC, 32, -5.778279782594e-01, 1.599111283071e-06, 7.9866e-01, 1.4006e-02, + 2DIAGNOSTIC, 33, -5.778329393263e-01, 1.764625684776e-06, 8.1427e-01, 1.5606e-02, + 2DIAGNOSTIC, 34, -5.778357460106e-01, 1.952578754204e-06, 8.2975e-01, 1.5479e-02, + 2DIAGNOSTIC, 35, -5.778298402018e-01, 1.945759078345e-06, 8.4487e-01, 1.5127e-02, + 2DIAGNOSTIC, 36, -5.778321559000e-01, 1.896547733318e-06, 8.5916e-01, 1.4288e-02, + 2DIAGNOSTIC, 37, -5.778351217897e-01, 1.664995054225e-06, 8.7318e-01, 1.4017e-02, + 2DIAGNOSTIC, 38, -5.778353408641e-01, 1.428461901033e-06, 8.8713e-01, 1.3945e-02, + 2DIAGNOSTIC, 39, -5.778370798926e-01, 1.229091118039e-06, 8.9883e-01, 1.1706e-02, + 2DIAGNOSTIC, 40, -5.778411680649e-01, 1.153532255410e-06, 9.1333e-01, 1.4500e-02, + 2DIAGNOSTIC, 41, -5.778470730363e-01, 1.143451666422e-06, 9.2812e-01, 1.4789e-02, + 2DIAGNOSTIC, 42, -5.778460004021e-01, 1.151022759709e-06, 9.4008e-01, 1.1962e-02, + 2DIAGNOSTIC, 43, -5.778460281557e-01, 1.178561892291e-06, 9.5148e-01, 1.1394e-02, + 2DIAGNOSTIC, 44, -5.778475257522e-01, 1.214622047985e-06, 9.6569e-01, 1.4218e-02, + 2DIAGNOSTIC, 45, -5.778495103763e-01, 1.157266017328e-06, 9.7840e-01, 1.2704e-02, + 2DIAGNOSTIC, 46, -5.778510914472e-01, 1.099185972901e-06, 9.9264e-01, 1.4240e-02, + 2DIAGNOSTIC, 47, -5.778489715549e-01, 1.014516566051e-06, 1.0046e+00, 1.1961e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.792735129524e-01, 1.797693134862e+308, 1.2205e+00, 2.1588e-01, + Elapsed time (stage 1): 1.2470e+00 + + +Total elapsed time: 2.3155e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:17:54 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 46 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 82 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 86.84% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 86.84% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[ 8934 5820 5799 7659 28260 752 2228 438 1260 3249 6027 475 + 167 1602 630 944 0 318 523 225 219 513 165 0 + 0 0 0 255 397 172 0 0 0 0 0 0 + 0 0 0 0 170 0 0 0 0 0] +[131784 66882 64509 73900 15070 16063 20060 13873 10856 9401 + 4464 7685 5278 1752 1252 1750 4283 3698 2873 1689 + 951 1425 930 1550 880 1012 1013 792 274 1000 + 741 523 741 568 217 460 898 235 418 296 + 284 0 302 243 218 280] +[ 446 2355 9145 0 0 170 6218 169 0 12848 0 0 + 305 0 0 0 0 8459 0 14913 0 0 6590 12328 + 0 0 0 0 928 0 0 188 0 0 0 0 + 1913 0 933 14343 9360 0 160 408 6695 0] +[ 6215 417 249 10607 572 12306 64056 5002 296 321 + 383 979 5330 1114 1046 862 574 257 3397 0 + 1106 7558 129483 419 681 5607 536 4698 199 1415 + 215 523 813 1389 2390 646 4246 2263 379 0 + 659 653 5278 6284 131509 182] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:26:43 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:26:48 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:36 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:36 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:36 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:47 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:50 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC004 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:31:09 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:31:34 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:33:27 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:33:28 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:34:49 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:34:50 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5559f8ab5d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [79.0448, 118.61, -131.164] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5559f892c730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff7103e7010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5559f8ab9020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 62.5211, -112.819] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5559f8abf0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff70cd28010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5559f8acf840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [79.0448, 118.61, -131.164] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5559f8abb890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff708054010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5559f8ad33e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 62.5211, -112.819] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5559f8ac2130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff704995010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.807379915493e-01, 1.797693134862e+308, 2.3899e-01, 2.3899e-01, + 2DIAGNOSTIC, 2, -4.815266954157e-01, 1.797693134862e+308, 2.4046e-01, 1.4701e-03, + 2DIAGNOSTIC, 3, -4.821339227115e-01, 1.797693134862e+308, 2.4165e-01, 1.1928e-03, + 2DIAGNOSTIC, 4, -4.830170680759e-01, 1.797693134862e+308, 2.4284e-01, 1.1899e-03, + 2DIAGNOSTIC, 5, -4.858775433987e-01, 1.797693134862e+308, 2.4406e-01, 1.2190e-03, + 2DIAGNOSTIC, 6, -4.895363242558e-01, 1.797693134862e+308, 2.4525e-01, 1.1880e-03, + 2DIAGNOSTIC, 7, -4.982011585430e-01, 1.797693134862e+308, 2.4645e-01, 1.2000e-03, + 2DIAGNOSTIC, 8, -5.238862107499e-01, 1.797693134862e+308, 2.4799e-01, 1.5421e-03, + 2DIAGNOSTIC, 9, -5.649691644749e-01, 1.797693134862e+308, 2.4948e-01, 1.4901e-03, + 2DIAGNOSTIC, 10, -5.664893690328e-01, 1.100049104185e-02, 2.5172e-01, 2.2390e-03, + 2DIAGNOSTIC, 11, -5.699001828958e-01, 1.206512064481e-02, 2.5346e-01, 1.7421e-03, + 2DIAGNOSTIC, 12, -5.706027565210e-01, 1.194676713604e-02, 2.5516e-01, 1.6940e-03, + 2DIAGNOSTIC, 13, -5.707869157661e-01, 1.079027937729e-02, 2.5710e-01, 1.9429e-03, + 2DIAGNOSTIC, 14, -5.706054203378e-01, 8.843457156028e-03, 2.5878e-01, 1.6770e-03, + 2DIAGNOSTIC, 15, -5.703210559325e-01, 6.476749244169e-03, 2.6049e-01, 1.7109e-03, + 2DIAGNOSTIC, 16, -5.704678358477e-01, 3.987821634729e-03, 2.6219e-01, 1.7021e-03, + 2DIAGNOSTIC, 17, -5.703277887240e-01, 1.707235288816e-03, 2.6370e-01, 1.5101e-03, + 2DIAGNOSTIC, 18, -5.694985388334e-01, 2.417941927226e-04, 2.6519e-01, 1.4889e-03, + 2DIAGNOSTIC, 19, -5.706054648020e-01, 9.595087669145e-05, 2.6758e-01, 2.3880e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.339909026909e-01, 1.797693134862e+308, 4.9017e-01, 2.2259e-01, + 2DIAGNOSTIC, 2, -4.331087955005e-01, 1.797693134862e+308, 4.9256e-01, 2.3901e-03, + 2DIAGNOSTIC, 3, -4.334454386530e-01, 1.797693134862e+308, 4.9462e-01, 2.0630e-03, + 2DIAGNOSTIC, 4, -4.344189393210e-01, 1.797693134862e+308, 4.9664e-01, 2.0111e-03, + 2DIAGNOSTIC, 5, -4.355659068742e-01, 1.797693134862e+308, 4.9856e-01, 1.9269e-03, + 2DIAGNOSTIC, 6, -4.377667340940e-01, 1.797693134862e+308, 5.0060e-01, 2.0368e-03, + 2DIAGNOSTIC, 7, -4.402527497761e-01, 1.797693134862e+308, 5.0310e-01, 2.5051e-03, + 2DIAGNOSTIC, 8, -4.534794925778e-01, 1.797693134862e+308, 5.0624e-01, 3.1371e-03, + 2DIAGNOSTIC, 9, -4.622809594802e-01, 1.797693134862e+308, 5.0921e-01, 2.9709e-03, + 2DIAGNOSTIC, 10, -4.651488430059e-01, 4.738231827103e-03, 5.1139e-01, 2.1808e-03, + 2DIAGNOSTIC, 11, -4.702899306256e-01, 5.409730401168e-03, 5.1389e-01, 2.4970e-03, + 2DIAGNOSTIC, 12, -4.734259148300e-01, 5.594528206120e-03, 5.1610e-01, 2.2130e-03, + 2DIAGNOSTIC, 13, -4.844463126783e-01, 5.776970359533e-03, 5.1898e-01, 2.8770e-03, + 2DIAGNOSTIC, 14, -4.865985350462e-01, 5.531547944114e-03, 5.2156e-01, 2.5809e-03, + 2DIAGNOSTIC, 15, -4.869476559740e-01, 4.889271610939e-03, 5.2379e-01, 2.2249e-03, + 2DIAGNOSTIC, 16, -4.874324938936e-01, 4.002638941521e-03, 5.2610e-01, 2.3170e-03, + 2DIAGNOSTIC, 17, -4.891424086495e-01, 3.000506333283e-03, 5.2938e-01, 3.2811e-03, + 2DIAGNOSTIC, 18, -4.933540154499e-01, 2.423723583742e-03, 5.3297e-01, 3.5889e-03, + 2DIAGNOSTIC, 19, -4.934159072800e-01, 1.969945658588e-03, 5.4146e-01, 8.4848e-03, + 2DIAGNOSTIC, 20, -4.934159050118e-01, 1.473861535994e-03, 5.4374e-01, 2.2819e-03, + 2DIAGNOSTIC, 21, -4.934159196712e-01, 1.044292941567e-03, 5.4602e-01, 2.2790e-03, + 2DIAGNOSTIC, 22, -4.934159444590e-01, 6.365075276910e-04, 5.4857e-01, 2.5501e-03, + 2DIAGNOSTIC, 23, -4.934159863715e-01, 4.943371149574e-04, 5.5172e-01, 3.1528e-03, + 2DIAGNOSTIC, 24, -4.934160572357e-01, 3.730164116547e-04, 5.5397e-01, 2.2490e-03, + 2DIAGNOSTIC, 25, -4.934161770400e-01, 2.373174554479e-04, 5.5622e-01, 2.2509e-03, + 2DIAGNOSTIC, 26, -4.934163795523e-01, 1.017173395103e-04, 5.5848e-01, 2.2590e-03, + 2DIAGNOSTIC, 27, -4.934167226030e-01, 2.645560794733e-06, 5.6073e-01, 2.2478e-03, + 2DIAGNOSTIC, 28, -4.934173022328e-01, 1.240695891865e-06, 5.6334e-01, 2.6159e-03, + 2DIAGNOSTIC, 29, -4.934182806417e-01, 1.232969348251e-06, 5.6582e-01, 2.4719e-03, + 2DIAGNOSTIC, 30, -4.934199299654e-01, 1.249864426067e-06, 5.6824e-01, 2.4261e-03, + 2DIAGNOSTIC, 31, -4.934227048230e-01, 1.305091078589e-06, 5.7058e-01, 2.3382e-03, + 2DIAGNOSTIC, 32, -4.934273233646e-01, 1.419982941536e-06, 5.7348e-01, 2.8992e-03, + 2DIAGNOSTIC, 33, -4.934350098855e-01, 1.629256570455e-06, 5.7650e-01, 3.0251e-03, + 2DIAGNOSTIC, 34, -4.934476971640e-01, 1.987493891478e-06, 5.7944e-01, 2.9371e-03, + 2DIAGNOSTIC, 35, -4.934684271069e-01, 2.579024008048e-06, 5.8202e-01, 2.5759e-03, + 2DIAGNOSTIC, 36, -4.935010397264e-01, 3.517503826992e-06, 5.8456e-01, 2.5420e-03, + 2DIAGNOSTIC, 37, -4.935495227085e-01, 4.931807289041e-06, 5.8711e-01, 2.5539e-03, + 2DIAGNOSTIC, 38, -4.936182657300e-01, 6.956021259049e-06, 5.8937e-01, 2.2559e-03, + 2DIAGNOSTIC, 39, -4.937956902332e-01, 1.099264714649e-05, 5.9252e-01, 3.1459e-03, + 2DIAGNOSTIC, 40, -4.938152986804e-01, 1.411169065110e-05, 5.9504e-01, 2.5260e-03, + 2DIAGNOSTIC, 41, -4.937434790776e-01, 1.483772573204e-05, 5.9777e-01, 2.7308e-03, + 2DIAGNOSTIC, 42, -4.936708458140e-01, 1.328918023955e-05, 5.9999e-01, 2.2190e-03, + 2DIAGNOSTIC, 43, -4.936074326863e-01, 9.852195472802e-06, 6.0220e-01, 2.2130e-03, + 2DIAGNOSTIC, 44, -4.936466831546e-01, 6.365859947462e-06, 6.0445e-01, 2.2478e-03, + 2DIAGNOSTIC, 45, -4.937952659951e-01, 4.686487777711e-06, 6.0706e-01, 2.6100e-03, + 2DIAGNOSTIC, 46, -4.938463490745e-01, 3.765007176700e-06, 6.0930e-01, 2.2402e-03, + 2DIAGNOSTIC, 47, -4.938454383650e-01, 3.229463386396e-06, 6.1188e-01, 2.5761e-03, + 2DIAGNOSTIC, 48, -4.939272190129e-01, 4.303741724856e-06, 6.1419e-01, 2.3119e-03, + 2DIAGNOSTIC, 49, -4.940491141450e-01, 8.528728673803e-06, 6.1649e-01, 2.2988e-03, + 2DIAGNOSTIC, 50, -4.940992638149e-01, 1.258838547840e-05, 6.1902e-01, 2.5289e-03, + 2DIAGNOSTIC, 51, -4.943046706061e-01, 1.690663408415e-05, 6.2123e-01, 2.2070e-03, + 2DIAGNOSTIC, 52, -4.943189838149e-01, 1.884479217831e-05, 6.2366e-01, 2.4359e-03, + 2DIAGNOSTIC, 53, -4.943431424008e-01, 1.855256905325e-05, 6.2644e-01, 2.7759e-03, + 2DIAGNOSTIC, 54, -4.943519731892e-01, 1.703732129996e-05, 6.2863e-01, 2.1908e-03, + 2DIAGNOSTIC, 55, -4.944045957300e-01, 1.613238717981e-05, 6.3111e-01, 2.4850e-03, + 2DIAGNOSTIC, 56, -4.943406966835e-01, 1.361569370612e-05, 6.3354e-01, 2.4281e-03, + 2DIAGNOSTIC, 57, -4.944148972666e-01, 1.070790110301e-05, 6.3627e-01, 2.7330e-03, + 2DIAGNOSTIC, 58, -4.945174281389e-01, 8.774924680141e-06, 6.3853e-01, 2.2581e-03, + 2DIAGNOSTIC, 59, -4.952091713510e-01, 1.419732458811e-05, 6.4139e-01, 2.8610e-03, + 2DIAGNOSTIC, 60, -4.949934638821e-01, 1.627433289197e-05, 6.4352e-01, 2.1310e-03, + 2DIAGNOSTIC, 61, -4.950211231929e-01, 1.917292464977e-05, 6.4568e-01, 2.1539e-03, + 2DIAGNOSTIC, 62, -4.956910638678e-01, 2.672156263011e-05, 6.4815e-01, 2.4769e-03, + 2DIAGNOSTIC, 63, -4.963400776732e-01, 3.751328153668e-05, 6.5064e-01, 2.4860e-03, + 2DIAGNOSTIC, 64, -4.966757660571e-01, 4.734947969612e-05, 6.5375e-01, 3.1090e-03, + 2DIAGNOSTIC, 65, -4.967255978946e-01, 5.342027555763e-05, 6.5628e-01, 2.5291e-03, + 2DIAGNOSTIC, 66, -4.966860852844e-01, 5.347887053991e-05, 6.5845e-01, 2.1670e-03, + 2DIAGNOSTIC, 67, -4.967796244677e-01, 4.985644448543e-05, 6.6059e-01, 2.1460e-03, + 2DIAGNOSTIC, 68, -4.970208192655e-01, 4.420912395264e-05, 6.6315e-01, 2.5561e-03, + 2DIAGNOSTIC, 69, -4.971210652095e-01, 4.125574373681e-05, 6.6630e-01, 3.1540e-03, + 2DIAGNOSTIC, 70, -4.978894668693e-01, 3.922186606856e-05, 6.6946e-01, 3.1629e-03, + 2DIAGNOSTIC, 71, -5.018426020917e-01, 6.610421376895e-05, 6.7318e-01, 3.7131e-03, + 2DIAGNOSTIC, 72, -5.094122792272e-01, 1.517794006756e-04, 6.7625e-01, 3.0699e-03, + 2DIAGNOSTIC, 73, -5.109564522756e-01, 2.365760093355e-04, 6.7901e-01, 2.7609e-03, + 2DIAGNOSTIC, 74, -5.122613616040e-01, 3.099578185659e-04, 6.8165e-01, 2.6410e-03, + 2DIAGNOSTIC, 75, -5.133815607370e-01, 3.611606879226e-04, 6.8497e-01, 3.3181e-03, + 2DIAGNOSTIC, 76, -5.135631008201e-01, 3.765676618888e-04, 6.8726e-01, 2.2931e-03, + 2DIAGNOSTIC, 77, -5.137665764782e-01, 3.566628807582e-04, 6.8989e-01, 2.6281e-03, + 2DIAGNOSTIC, 78, -5.140873280174e-01, 3.073044778650e-04, 6.9225e-01, 2.3639e-03, + 2DIAGNOSTIC, 79, -5.145707603291e-01, 2.347704125502e-04, 6.9492e-01, 2.6650e-03, + 2DIAGNOSTIC, 80, -5.150159374487e-01, 1.501330590854e-04, 6.9821e-01, 3.2930e-03, + 2DIAGNOSTIC, 81, -5.155773903275e-01, 8.426727267506e-05, 7.0148e-01, 3.2701e-03, + 2DIAGNOSTIC, 82, -5.156665804058e-01, 6.607092284218e-05, 7.0371e-01, 2.2249e-03, + 2DIAGNOSTIC, 83, -5.163403606581e-01, 5.736974218893e-05, 7.0621e-01, 2.5051e-03, + 2DIAGNOSTIC, 84, -5.166874190830e-01, 5.446023238862e-05, 7.0873e-01, 2.5179e-03, + 2DIAGNOSTIC, 85, -5.168483241624e-01, 5.506659250815e-05, 7.1105e-01, 2.3170e-03, + 2DIAGNOSTIC, 86, -5.173963874509e-01, 5.531952336187e-05, 7.1353e-01, 2.4800e-03, + 2DIAGNOSTIC, 87, -5.190689492074e-01, 6.266136056982e-05, 7.1642e-01, 2.8920e-03, + 2DIAGNOSTIC, 88, -5.271050654808e-01, 1.183495943397e-04, 7.2017e-01, 3.7472e-03, + 2DIAGNOSTIC, 89, -5.311351579565e-01, 1.891775488273e-04, 7.2281e-01, 2.6481e-03, + 2DIAGNOSTIC, 90, -5.348937975615e-01, 2.669803896447e-04, 7.2710e-01, 4.2858e-03, + 2DIAGNOSTIC, 91, -5.357848948436e-01, 3.267802521898e-04, 7.2975e-01, 2.6481e-03, + 2DIAGNOSTIC, 92, -5.371352590878e-01, 3.626952275561e-04, 7.3230e-01, 2.5549e-03, + 2DIAGNOSTIC, 93, -5.383950467304e-01, 3.739352539288e-04, 7.3488e-01, 2.5768e-03, + 2DIAGNOSTIC, 94, -5.393325453079e-01, 3.561041706062e-04, 7.3711e-01, 2.2280e-03, + 2DIAGNOSTIC, 95, -5.415284033885e-01, 3.188994771146e-04, 7.3948e-01, 2.3770e-03, + 2DIAGNOSTIC, 96, -5.432943269304e-01, 2.658491203567e-04, 7.4223e-01, 2.7440e-03, + 2DIAGNOSTIC, 97, -5.483999536928e-01, 2.273873427515e-04, 7.4571e-01, 3.4800e-03, + 2DIAGNOSTIC, 98, -5.497284367719e-01, 2.214965709415e-04, 7.4793e-01, 2.2268e-03, + 2DIAGNOSTIC, 99, -5.520991217463e-01, 2.309987565634e-04, 7.5069e-01, 2.7530e-03, + 2DIAGNOSTIC, 100, -5.576748498094e-01, 2.712214595292e-04, 7.5284e-01, 2.1501e-03, + 2DIAGNOSTIC, 101, -5.641292306950e-01, 3.247947208047e-04, 7.5592e-01, 3.0780e-03, + 2DIAGNOSTIC, 102, -5.663264185377e-01, 3.646618181350e-04, 7.5840e-01, 2.4869e-03, + 2DIAGNOSTIC, 103, -5.677891073619e-01, 3.838903346745e-04, 7.6112e-01, 2.7130e-03, + 2DIAGNOSTIC, 104, -5.691862380006e-01, 3.786881320376e-04, 7.6345e-01, 2.3351e-03, + 2DIAGNOSTIC, 105, -5.823897462860e-01, 4.196246240173e-04, 7.6579e-01, 2.3391e-03, + 2DIAGNOSTIC, 106, -6.098684000377e-01, 5.719712414671e-04, 7.6810e-01, 2.3141e-03, + 2DIAGNOSTIC, 107, -6.265782673928e-01, 7.773707641408e-04, 7.7100e-01, 2.8911e-03, + 2DIAGNOSTIC, 108, -6.318671431818e-01, 9.380401535198e-04, 7.7454e-01, 3.5410e-03, + 2DIAGNOSTIC, 109, -6.342305968403e-01, 1.030641551095e-03, 7.7681e-01, 2.2781e-03, + 2DIAGNOSTIC, 110, -6.426573729398e-01, 1.091693931613e-03, 7.7907e-01, 2.2519e-03, + 2DIAGNOSTIC, 111, -6.486673253129e-01, 1.104842313236e-03, 7.8191e-01, 2.8419e-03, + 2DIAGNOSTIC, 112, -6.495240135958e-01, 1.024848622479e-03, 7.8411e-01, 2.2061e-03, + 2DIAGNOSTIC, 113, -6.524221231971e-01, 8.719122409653e-04, 7.8632e-01, 2.2080e-03, + 2DIAGNOSTIC, 114, -6.553464845984e-01, 6.598756316702e-04, 7.8855e-01, 2.2299e-03, + 2DIAGNOSTIC, 115, -6.600029671414e-01, 4.712824296791e-04, 7.9087e-01, 2.3189e-03, + 2DIAGNOSTIC, 116, -6.790576133247e-01, 4.599943048809e-04, 7.9350e-01, 2.6319e-03, + 2DIAGNOSTIC, 117, -7.125368403862e-01, 6.380780307924e-04, 7.9611e-01, 2.6031e-03, + 2DIAGNOSTIC, 118, -7.194347367207e-01, 8.042023436641e-04, 7.9867e-01, 2.5599e-03, + 2DIAGNOSTIC, 119, -7.217401370023e-01, 9.114646817556e-04, 8.0184e-01, 3.1788e-03, + 2DIAGNOSTIC, 120, -7.288771565393e-01, 1.000014644693e-03, 8.0436e-01, 2.5110e-03, + 2DIAGNOSTIC, 121, -7.302790299132e-01, 1.020996959986e-03, 8.0680e-01, 2.4440e-03, + 2DIAGNOSTIC, 122, -7.319315908788e-01, 9.514696567817e-04, 8.0896e-01, 2.1579e-03, + 2DIAGNOSTIC, 123, -7.322376145599e-01, 8.060992833444e-04, 8.1140e-01, 2.4378e-03, + 2DIAGNOSTIC, 124, -7.326286317889e-01, 6.029557658121e-04, 8.1382e-01, 2.4290e-03, + 2DIAGNOSTIC, 125, -7.325875546860e-01, 3.651864955688e-04, 8.1659e-01, 2.7680e-03, + 2DIAGNOSTIC, 126, -7.325474719632e-01, 1.742307066446e-04, 8.1884e-01, 2.2480e-03, + 2DIAGNOSTIC, 127, -7.329003569373e-01, 1.122141016680e-04, 8.2102e-01, 2.1789e-03, + 2DIAGNOSTIC, 128, -7.329614686678e-01, 6.966746937498e-05, 8.2382e-01, 2.8040e-03, + 2DIAGNOSTIC, 129, -7.331182678138e-01, 3.074192934630e-05, 8.2602e-01, 2.1980e-03, + 2DIAGNOSTIC, 130, -7.330832081027e-01, 1.849836138938e-05, 8.2819e-01, 2.1729e-03, + 2DIAGNOSTIC, 131, -7.334023447708e-01, 1.153614972366e-05, 8.3075e-01, 2.5520e-03, + 2DIAGNOSTIC, 132, -7.335545261536e-01, 1.074587396972e-05, 8.3337e-01, 2.6271e-03, + 2DIAGNOSTIC, 133, -7.335342342315e-01, 1.002420184810e-05, 8.3563e-01, 2.2540e-03, + 2DIAGNOSTIC, 134, -7.344305605001e-01, 1.344316799241e-05, 8.3812e-01, 2.4889e-03, + 2DIAGNOSTIC, 135, -7.350052743962e-01, 1.751337734393e-05, 8.4187e-01, 3.7489e-03, + 2DIAGNOSTIC, 136, -7.350102232006e-01, 1.963216329116e-05, 8.4430e-01, 2.4300e-03, + 2DIAGNOSTIC, 137, -7.352107967800e-01, 2.199911565750e-05, 8.4642e-01, 2.1238e-03, + 2DIAGNOSTIC, 138, -7.351107636922e-01, 2.207484233654e-05, 8.4853e-01, 2.1129e-03, + 2DIAGNOSTIC, 139, -7.350951483149e-01, 2.054800003415e-05, 8.5097e-01, 2.4419e-03, + 2DIAGNOSTIC, 140, -7.353075868036e-01, 1.767433324015e-05, 8.5314e-01, 2.1641e-03, + 2DIAGNOSTIC, 141, -7.351729812358e-01, 1.384078252152e-05, 8.5528e-01, 2.1451e-03, + 2DIAGNOSTIC, 142, -7.352239565163e-01, 9.586155514970e-06, 8.5771e-01, 2.4250e-03, + 2DIAGNOSTIC, 143, -7.352796482235e-01, 4.574665634850e-06, 8.5983e-01, 2.1200e-03, + 2DIAGNOSTIC, 144, -7.351849783229e-01, 2.022219421539e-06, 8.6258e-01, 2.7528e-03, + 2DIAGNOSTIC, 145, -7.354071802190e-01, 2.152774408596e-06, 8.6586e-01, 3.2830e-03, + 2DIAGNOSTIC, 146, -7.356104299745e-01, 2.781108370839e-06, 8.6795e-01, 2.0871e-03, + 2DIAGNOSTIC, 147, -7.356138290883e-01, 3.862861301850e-06, 8.7005e-01, 2.0962e-03, + 2DIAGNOSTIC, 148, -7.356235278112e-01, 4.290292590983e-06, 8.7210e-01, 2.0499e-03, + 2DIAGNOSTIC, 149, -7.358376128185e-01, 4.982835267427e-06, 8.7573e-01, 3.6309e-03, + 2DIAGNOSTIC, 150, -7.358480966013e-01, 5.940017887949e-06, 8.7810e-01, 2.3761e-03, + 2DIAGNOSTIC, 151, -7.358526544754e-01, 5.884618874340e-06, 8.8053e-01, 2.4269e-03, + 2DIAGNOSTIC, 152, -7.358583113695e-01, 5.484607065599e-06, 8.8297e-01, 2.4440e-03, + 2DIAGNOSTIC, 153, -7.358687871797e-01, 4.827873089178e-06, 8.8540e-01, 2.4240e-03, + 2DIAGNOSTIC, 154, -7.357075617056e-01, 2.884548599740e-06, 8.8823e-01, 2.8291e-03, + 2DIAGNOSTIC, 155, -7.357111484388e-01, 1.440626316589e-06, 8.9152e-01, 3.2902e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.041969433853e-01, 1.797693134862e+308, 1.1383e+00, 2.4678e-01, + 2DIAGNOSTIC, 2, -6.056224047724e-01, 1.797693134862e+308, 1.1512e+00, 1.2858e-02, + 2DIAGNOSTIC, 3, -6.072048001993e-01, 1.797693134862e+308, 1.1643e+00, 1.3130e-02, + 2DIAGNOSTIC, 4, -6.087153378387e-01, 1.797693134862e+308, 1.1770e+00, 1.2719e-02, + 2DIAGNOSTIC, 5, -6.096368804159e-01, 1.797693134862e+308, 1.1918e+00, 1.4758e-02, + 2DIAGNOSTIC, 6, -6.100073980542e-01, 1.797693134862e+308, 1.2047e+00, 1.2916e-02, + 2DIAGNOSTIC, 7, -6.103254180964e-01, 1.797693134862e+308, 1.2173e+00, 1.2652e-02, + 2DIAGNOSTIC, 8, -6.105232994211e-01, 1.797693134862e+308, 1.2340e+00, 1.6696e-02, + 2DIAGNOSTIC, 9, -6.104520628323e-01, 1.797693134862e+308, 1.2496e+00, 1.5585e-02, + 2DIAGNOSTIC, 10, -6.104224748317e-01, 6.375962359424e-04, 1.2625e+00, 1.2844e-02, + 2DIAGNOSTIC, 11, -6.105750817739e-01, 4.038707245154e-04, 1.2771e+00, 1.4645e-02, + 2DIAGNOSTIC, 12, -6.114375101497e-01, 2.612033752067e-04, 1.2971e+00, 2.0003e-02, + 2DIAGNOSTIC, 13, -6.114264985888e-01, 1.716828349830e-04, 1.3096e+00, 1.2443e-02, + 2DIAGNOSTIC, 14, -6.119717840183e-01, 1.479972659657e-04, 1.3238e+00, 1.4286e-02, + 2DIAGNOSTIC, 15, -6.122724766448e-01, 1.520073198599e-04, 1.3362e+00, 1.2343e-02, + 2DIAGNOSTIC, 16, -6.122658059999e-01, 1.519113122049e-04, 1.3528e+00, 1.6593e-02, + 2DIAGNOSTIC, 17, -6.122803900101e-01, 1.468870344232e-04, 1.3671e+00, 1.4304e-02, + 2DIAGNOSTIC, 18, -6.122566235271e-01, 1.336259849041e-04, 1.3813e+00, 1.4176e-02, + 2DIAGNOSTIC, 19, -6.122514460946e-01, 1.078531544741e-04, 1.3955e+00, 1.4233e-02, + 2DIAGNOSTIC, 20, -6.122608897286e-01, 7.430540385066e-05, 1.4083e+00, 1.2833e-02, + 2DIAGNOSTIC, 21, -6.122767058239e-01, 4.053031239604e-05, 1.4205e+00, 1.2219e-02, + 2DIAGNOSTIC, 22, -6.123236837359e-01, 2.567478411473e-05, 1.4384e+00, 1.7874e-02, + 2DIAGNOSTIC, 23, -6.123507789258e-01, 9.915854087543e-06, 1.4506e+00, 1.2225e-02, + 2DIAGNOSTIC, 24, -6.123277121050e-01, 4.641287736133e-06, 1.4628e+00, 1.2189e-02, + 2DIAGNOSTIC, 25, -6.123433053016e-01, 5.395013306035e-06, 1.4752e+00, 1.2347e-02, + 2DIAGNOSTIC, 26, -6.123843548633e-01, 6.290713932329e-06, 1.4893e+00, 1.4147e-02, + 2DIAGNOSTIC, 27, -6.124509196986e-01, 8.014696307637e-06, 1.5040e+00, 1.4682e-02, + 2DIAGNOSTIC, 28, -6.124455339195e-01, 8.466727240759e-06, 1.5159e+00, 1.1919e-02, + 2DIAGNOSTIC, 29, -6.126647141210e-01, 1.166882467808e-05, 1.5320e+00, 1.6103e-02, + 2DIAGNOSTIC, 30, -6.126475523655e-01, 1.346006736642e-05, 1.5471e+00, 1.5100e-02, + 2DIAGNOSTIC, 31, -6.126772216627e-01, 1.465410914103e-05, 1.5679e+00, 2.0768e-02, + 2DIAGNOSTIC, 32, -6.126716244405e-01, 1.509041292694e-05, 1.5840e+00, 1.6150e-02, + 2DIAGNOSTIC, 33, -6.126727780006e-01, 1.457244255895e-05, 1.5963e+00, 1.2271e-02, + 2DIAGNOSTIC, 34, -6.126574095421e-01, 1.223907879335e-05, 1.6085e+00, 1.2216e-02, + 2DIAGNOSTIC, 35, -6.126582596297e-01, 9.174099727664e-06, 1.6211e+00, 1.2539e-02, + 2DIAGNOSTIC, 36, -6.126589107656e-01, 6.045441577351e-06, 1.6337e+00, 1.2609e-02, + 2DIAGNOSTIC, 37, -6.126604175224e-01, 3.478665444950e-06, 1.6464e+00, 1.2692e-02, + 2DIAGNOSTIC, 38, -6.127164359989e-01, 1.344379938331e-06, 1.6609e+00, 1.4557e-02, + 2DIAGNOSTIC, 39, -6.127356544818e-01, 2.106453163626e-06, 1.6736e+00, 1.2694e-02, + 2DIAGNOSTIC, 40, -6.127854046237e-01, 3.077841513148e-06, 1.6901e+00, 1.6523e-02, + 2DIAGNOSTIC, 41, -6.127692333590e-01, 3.932880766892e-06, 1.7057e+00, 1.5570e-02, + 2DIAGNOSTIC, 42, -6.127479999327e-01, 4.159244847823e-06, 1.7220e+00, 1.6294e-02, + 2DIAGNOSTIC, 43, -6.127501831522e-01, 4.093429369800e-06, 1.7363e+00, 1.4252e-02, + 2DIAGNOSTIC, 44, -6.127207845518e-01, 3.223674451183e-06, 1.7489e+00, 1.2635e-02, + 2DIAGNOSTIC, 45, -6.127313451705e-01, 2.277482161254e-06, 1.7622e+00, 1.3284e-02, + 2DIAGNOSTIC, 46, -6.128022039589e-01, 1.949677931497e-06, 1.7768e+00, 1.4579e-02, + 2DIAGNOSTIC, 47, -6.127734626812e-01, 1.221259556893e-06, 1.7894e+00, 1.2688e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.111090758069e-01, 1.797693134862e+308, 2.2177e+00, 4.2826e-01, + 2DIAGNOSTIC, 2, -5.114257573652e-01, 1.797693134862e+308, 2.3054e+00, 8.7727e-02, + 2DIAGNOSTIC, 3, -5.116019466596e-01, 1.797693134862e+308, 2.3930e+00, 8.7574e-02, + 2DIAGNOSTIC, 4, -5.117364838550e-01, 1.797693134862e+308, 2.4775e+00, 8.4448e-02, + 2DIAGNOSTIC, 5, -5.118643559495e-01, 1.797693134862e+308, 2.5735e+00, 9.6016e-02, + 2DIAGNOSTIC, 6, -5.120255368788e-01, 1.797693134862e+308, 2.6937e+00, 1.2025e-01, + 2DIAGNOSTIC, 7, -5.120933153056e-01, 1.797693134862e+308, 2.8277e+00, 1.3395e-01, + 2DIAGNOSTIC, 8, -5.121024132681e-01, 1.797693134862e+308, 2.9212e+00, 9.3503e-02, + 2DIAGNOSTIC, 9, -5.120988508612e-01, 1.797693134862e+308, 3.0608e+00, 1.3961e-01, + 2DIAGNOSTIC, 10, -5.120994664273e-01, 1.210716457579e-04, 3.1624e+00, 1.0159e-01, + 2DIAGNOSTIC, 11, -5.120986821008e-01, 7.781941520200e-05, 3.2504e+00, 8.8024e-02, + 2DIAGNOSTIC, 12, -5.120952152235e-01, 4.940791716465e-05, 3.3503e+00, 9.9948e-02, + 2DIAGNOSTIC, 13, -5.120971355633e-01, 2.875552606166e-05, 3.4616e+00, 1.1127e-01, + 2DIAGNOSTIC, 14, -5.120979545279e-01, 1.400524760749e-05, 3.5591e+00, 9.7521e-02, + 2DIAGNOSTIC, 15, -5.120971172471e-01, 4.716056060297e-06, 3.6524e+00, 9.3235e-02, + 2DIAGNOSTIC, 16, -5.120966070286e-01, 1.863030434979e-06, 3.7518e+00, 9.9418e-02, + 2DIAGNOSTIC, 17, -5.120946212021e-01, 1.498704858112e-06, 3.8497e+00, 9.7878e-02, + 2DIAGNOSTIC, 18, -5.120921604952e-01, 1.417483274625e-06, 3.9453e+00, 9.5643e-02, + 2DIAGNOSTIC, 19, -5.120900285590e-01, 1.209040646759e-06, 4.0400e+00, 9.4723e-02, + 2DIAGNOSTIC, 20, -5.120916039368e-01, 1.126193482866e-06, 4.1341e+00, 9.4091e-02, + 2DIAGNOSTIC, 21, -5.120888007719e-01, 1.000870330524e-06, 4.2280e+00, 9.3879e-02, + Elapsed time (stage 0): 4.3854e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.226247008610e-01, 1.797693134862e+308, 2.0532e-01, 2.0532e-01, + 2DIAGNOSTIC, 2, -8.253956416174e-01, 1.797693134862e+308, 2.0680e-01, 1.4770e-03, + 2DIAGNOSTIC, 3, -8.296524726047e-01, 1.797693134862e+308, 2.0816e-01, 1.3611e-03, + 2DIAGNOSTIC, 4, -8.325491770466e-01, 1.797693134862e+308, 2.0950e-01, 1.3459e-03, + 2DIAGNOSTIC, 5, -8.440192529371e-01, 1.797693134862e+308, 2.1081e-01, 1.3070e-03, + 2DIAGNOSTIC, 6, -8.660131161610e-01, 1.797693134862e+308, 2.1219e-01, 1.3781e-03, + 2DIAGNOSTIC, 7, -8.865430069769e-01, 1.797693134862e+308, 2.1370e-01, 1.5070e-03, + 2DIAGNOSTIC, 8, -9.140844503833e-01, 1.797693134862e+308, 2.1553e-01, 1.8380e-03, + 2DIAGNOSTIC, 9, -9.238429542052e-01, 1.797693134862e+308, 2.1815e-01, 2.6209e-03, + 2DIAGNOSTIC, 10, -9.251621146710e-01, 9.072599750235e-03, 2.2027e-01, 2.1200e-03, + 2DIAGNOSTIC, 11, -9.249690134008e-01, 8.391963546971e-03, 2.2237e-01, 2.1000e-03, + 2DIAGNOSTIC, 12, -9.248410314696e-01, 7.147279348426e-03, 2.2452e-01, 2.1501e-03, + 2DIAGNOSTIC, 13, -9.254242215046e-01, 5.577790847359e-03, 2.2600e-01, 1.4791e-03, + 2DIAGNOSTIC, 14, -9.258437161247e-01, 3.814102052206e-03, 2.2769e-01, 1.6861e-03, + 2DIAGNOSTIC, 15, -9.276294367971e-01, 2.232185032571e-03, 2.2912e-01, 1.4329e-03, + 2DIAGNOSTIC, 16, -9.277220289303e-01, 1.091197896660e-03, 2.3115e-01, 2.0311e-03, + 2DIAGNOSTIC, 17, -9.281909063388e-01, 3.720068216235e-04, 2.3263e-01, 1.4801e-03, + 2DIAGNOSTIC, 18, -9.279240119897e-01, 1.790990166645e-04, 2.3429e-01, 1.6549e-03, + 2DIAGNOSTIC, 19, -9.270541577956e-01, 1.386383727075e-04, 2.3567e-01, 1.3781e-03, + 2DIAGNOSTIC, 20, -9.272183025972e-01, 1.133339983618e-04, 2.3715e-01, 1.4791e-03, + 2DIAGNOSTIC, 21, -9.277203042127e-01, 8.459962066534e-05, 2.3852e-01, 1.3740e-03, + 2DIAGNOSTIC, 22, -9.293294472963e-01, 7.184510091571e-05, 2.4024e-01, 1.7200e-03, + 2DIAGNOSTIC, 23, -9.306571128384e-01, 7.958444988387e-05, 2.4257e-01, 2.3351e-03, + 2DIAGNOSTIC, 24, -9.296444778354e-01, 7.106522312886e-05, 2.4432e-01, 1.7431e-03, + 2DIAGNOSTIC, 25, -9.290683583469e-01, 7.279623023086e-05, 2.4566e-01, 1.3459e-03, + 2DIAGNOSTIC, 26, -9.283819864185e-01, 6.025610446442e-05, 2.4709e-01, 1.4260e-03, + 2DIAGNOSTIC, 27, -9.284775648650e-01, 4.923879307413e-05, 2.4851e-01, 1.4250e-03, + 2DIAGNOSTIC, 28, -9.278600559425e-01, 2.448358195831e-05, 2.5000e-01, 1.4861e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.137672021761e-01, 1.797693134862e+308, 4.6399e-01, 2.1398e-01, + 2DIAGNOSTIC, 2, -8.133170987053e-01, 1.797693134862e+308, 4.6605e-01, 2.0659e-03, + 2DIAGNOSTIC, 3, -8.142609971654e-01, 1.797693134862e+308, 4.6808e-01, 2.0292e-03, + 2DIAGNOSTIC, 4, -8.154012655354e-01, 1.797693134862e+308, 4.7042e-01, 2.3379e-03, + 2DIAGNOSTIC, 5, -8.167304476833e-01, 1.797693134862e+308, 4.7295e-01, 2.5270e-03, + 2DIAGNOSTIC, 6, -8.169436295382e-01, 1.797693134862e+308, 4.7569e-01, 2.7430e-03, + 2DIAGNOSTIC, 7, -8.168078252915e-01, 1.797693134862e+308, 4.7823e-01, 2.5420e-03, + 2DIAGNOSTIC, 8, -8.167606268814e-01, 1.797693134862e+308, 4.8048e-01, 2.2449e-03, + 2DIAGNOSTIC, 9, -8.166085571791e-01, 1.797693134862e+308, 4.8315e-01, 2.6700e-03, + 2DIAGNOSTIC, 10, -8.167181003886e-01, 2.914307660434e-04, 4.8575e-01, 2.6040e-03, + 2DIAGNOSTIC, 11, -8.164497724304e-01, 1.966756269037e-04, 4.8802e-01, 2.2721e-03, + 2DIAGNOSTIC, 12, -8.164267246264e-01, 8.709532289909e-05, 4.9038e-01, 2.3589e-03, + 2DIAGNOSTIC, 13, -8.166733698279e-01, 1.833678253588e-05, 4.9305e-01, 2.6710e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.847975952900e-01, 1.797693134862e+308, 7.2824e-01, 2.3519e-01, + 2DIAGNOSTIC, 2, -6.861662262998e-01, 1.797693134862e+308, 7.4174e-01, 1.3494e-02, + 2DIAGNOSTIC, 3, -6.875523340121e-01, 1.797693134862e+308, 7.5528e-01, 1.3543e-02, + 2DIAGNOSTIC, 4, -6.892362003339e-01, 1.797693134862e+308, 7.6916e-01, 1.3884e-02, + 2DIAGNOSTIC, 5, -6.906408879628e-01, 1.797693134862e+308, 7.8303e-01, 1.3861e-02, + 2DIAGNOSTIC, 6, -6.921784925926e-01, 1.797693134862e+308, 7.9980e-01, 1.6772e-02, + 2DIAGNOSTIC, 7, -6.940708331632e-01, 1.797693134862e+308, 8.2999e-01, 3.0188e-02, + 2DIAGNOSTIC, 8, -6.941136956955e-01, 1.797693134862e+308, 8.4556e-01, 1.5570e-02, + 2DIAGNOSTIC, 9, -6.942012584495e-01, 1.797693134862e+308, 8.6107e-01, 1.5513e-02, + 2DIAGNOSTIC, 10, -6.942943609690e-01, 9.756462538790e-04, 8.7483e-01, 1.3761e-02, + 2DIAGNOSTIC, 11, -6.943994286637e-01, 7.335712980004e-04, 8.8930e-01, 1.4472e-02, + 2DIAGNOSTIC, 12, -6.945332104479e-01, 5.168008417459e-04, 9.0308e-01, 1.3779e-02, + 2DIAGNOSTIC, 13, -6.947072159381e-01, 3.359370617604e-04, 9.1696e-01, 1.3882e-02, + 2DIAGNOSTIC, 14, -6.949403666514e-01, 2.071464256472e-04, 9.3102e-01, 1.4053e-02, + 2DIAGNOSTIC, 15, -6.951112116011e-01, 1.193439847266e-04, 9.4497e-01, 1.3952e-02, + 2DIAGNOSTIC, 16, -6.955420542136e-01, 8.093221221812e-05, 9.5892e-01, 1.3955e-02, + 2DIAGNOSTIC, 17, -6.962490342487e-01, 1.023393681919e-04, 9.7298e-01, 1.4053e-02, + 2DIAGNOSTIC, 18, -6.974531468557e-01, 1.401160916736e-04, 9.9125e-01, 1.8278e-02, + 2DIAGNOSTIC, 19, -6.977204183361e-01, 1.682271310618e-04, 1.0093e+00, 1.8079e-02, + 2DIAGNOSTIC, 20, -6.978334219887e-01, 1.825573563271e-04, 1.0231e+00, 1.3774e-02, + 2DIAGNOSTIC, 21, -6.979354727558e-01, 1.829193359586e-04, 1.0370e+00, 1.3923e-02, + 2DIAGNOSTIC, 22, -6.980985994740e-01, 1.715703796334e-04, 1.0554e+00, 1.8393e-02, + 2DIAGNOSTIC, 23, -6.982065681301e-01, 1.499099179238e-04, 1.0720e+00, 1.6583e-02, + 2DIAGNOSTIC, 24, -6.982897581555e-01, 1.215928090617e-04, 1.0868e+00, 1.4806e-02, + 2DIAGNOSTIC, 25, -6.988277254107e-01, 9.609833220154e-05, 1.1019e+00, 1.5092e-02, + 2DIAGNOSTIC, 26, -7.000169691889e-01, 8.889187808289e-05, 1.1229e+00, 2.0971e-02, + 2DIAGNOSTIC, 27, -7.000851563843e-01, 8.481713472934e-05, 1.1415e+00, 1.8589e-02, + 2DIAGNOSTIC, 28, -7.000897666538e-01, 9.100616896475e-05, 1.1559e+00, 1.4434e-02, + 2DIAGNOSTIC, 29, -7.001307399424e-01, 9.286471278017e-05, 1.1703e+00, 1.4423e-02, + 2DIAGNOSTIC, 30, -7.001101913526e-01, 8.700606301240e-05, 1.1852e+00, 1.4874e-02, + 2DIAGNOSTIC, 31, -7.003008910333e-01, 7.694777967733e-05, 1.2012e+00, 1.6022e-02, + 2DIAGNOSTIC, 32, -7.004312128981e-01, 6.402602750611e-05, 1.2215e+00, 2.0326e-02, + 2DIAGNOSTIC, 33, -7.004420116666e-01, 4.764918675172e-05, 1.2380e+00, 1.6422e-02, + 2DIAGNOSTIC, 34, -7.005084871950e-01, 2.965426800473e-05, 1.2539e+00, 1.5922e-02, + 2DIAGNOSTIC, 35, -7.004983577726e-01, 1.573546641605e-05, 1.2677e+00, 1.3863e-02, + 2DIAGNOSTIC, 36, -7.004859497728e-01, 1.449148543789e-05, 1.2817e+00, 1.3939e-02, + 2DIAGNOSTIC, 37, -7.004945052002e-01, 1.284970205935e-05, 1.2962e+00, 1.4500e-02, + 2DIAGNOSTIC, 38, -7.005216796336e-01, 1.049716268803e-05, 1.3114e+00, 1.5171e-02, + 2DIAGNOSTIC, 39, -7.006159615359e-01, 8.792649360160e-06, 1.3251e+00, 1.3720e-02, + 2DIAGNOSTIC, 40, -7.010630663636e-01, 1.070333932534e-05, 1.3449e+00, 1.9787e-02, + 2DIAGNOSTIC, 41, -7.010380309591e-01, 1.308922045336e-05, 1.3671e+00, 2.2238e-02, + 2DIAGNOSTIC, 42, -7.010494144333e-01, 1.563723885597e-05, 1.3835e+00, 1.6382e-02, + 2DIAGNOSTIC, 43, -7.010214816654e-01, 1.651655324289e-05, 1.3986e+00, 1.5089e-02, + 2DIAGNOSTIC, 44, -7.010179708013e-01, 1.640788327639e-05, 1.4126e+00, 1.4040e-02, + 2DIAGNOSTIC, 45, -7.010632034871e-01, 1.505959354728e-05, 1.4285e+00, 1.5894e-02, + 2DIAGNOSTIC, 46, -7.010674289131e-01, 1.231184100780e-05, 1.4428e+00, 1.4248e-02, + 2DIAGNOSTIC, 47, -7.010940210303e-01, 8.944103760830e-06, 1.4581e+00, 1.5385e-02, + 2DIAGNOSTIC, 48, -7.011247440266e-01, 5.441009800634e-06, 1.4737e+00, 1.5529e-02, + 2DIAGNOSTIC, 49, -7.010779163471e-01, 1.907160520530e-06, 1.4894e+00, 1.5679e-02, + 2DIAGNOSTIC, 50, -7.010811000636e-01, 2.079367782022e-06, 1.5054e+00, 1.6053e-02, + 2DIAGNOSTIC, 51, -7.010628362729e-01, 1.751087853139e-06, 1.5200e+00, 1.4572e-02, + 2DIAGNOSTIC, 52, -7.010263543216e-01, 1.136623973441e-06, 1.5349e+00, 1.4879e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.838514572711e-01, 1.797693134862e+308, 1.9779e+00, 4.4302e-01, + 2DIAGNOSTIC, 2, -5.847093390380e-01, 1.797693134862e+308, 2.0761e+00, 9.8208e-02, + 2DIAGNOSTIC, 3, -5.852693446652e-01, 1.797693134862e+308, 2.1910e+00, 1.1496e-01, + 2DIAGNOSTIC, 4, -5.855311961354e-01, 1.797693134862e+308, 2.2882e+00, 9.7110e-02, + 2DIAGNOSTIC, 5, -5.857498331179e-01, 1.797693134862e+308, 2.3914e+00, 1.0328e-01, + 2DIAGNOSTIC, 6, -5.860826821796e-01, 1.797693134862e+308, 2.4916e+00, 1.0019e-01, + 2DIAGNOSTIC, 7, -5.865130268276e-01, 1.797693134862e+308, 2.6242e+00, 1.3262e-01, + 2DIAGNOSTIC, 8, -5.865893901734e-01, 1.797693134862e+308, 2.7377e+00, 1.1349e-01, + 2DIAGNOSTIC, 9, -5.866458252024e-01, 1.797693134862e+308, 2.8653e+00, 1.2754e-01, + 2DIAGNOSTIC, 10, -5.867108407300e-01, 2.938742639239e-04, 2.9598e+00, 9.4491e-02, + 2DIAGNOSTIC, 11, -5.867275890518e-01, 2.023752770861e-04, 3.0588e+00, 9.9065e-02, + 2DIAGNOSTIC, 12, -5.867627161547e-01, 1.436758642517e-04, 3.1510e+00, 9.2202e-02, + 2DIAGNOSTIC, 13, -5.869632357499e-01, 1.095720092035e-04, 3.3099e+00, 1.5892e-01, + 2DIAGNOSTIC, 14, -5.869745323277e-01, 8.001927800394e-05, 3.4253e+00, 1.1534e-01, + 2DIAGNOSTIC, 15, -5.869727428661e-01, 5.426668638622e-05, 3.5515e+00, 1.2625e-01, + 2DIAGNOSTIC, 16, -5.869729033176e-01, 3.681390694731e-05, 3.6493e+00, 9.7779e-02, + 2DIAGNOSTIC, 17, -5.869713264955e-01, 3.039043430442e-05, 3.7649e+00, 1.1554e-01, + 2DIAGNOSTIC, 18, -5.869736259328e-01, 2.405539807944e-05, 3.8780e+00, 1.1314e-01, + 2DIAGNOSTIC, 19, -5.869760330226e-01, 1.777029415871e-05, 3.9771e+00, 9.9147e-02, + 2DIAGNOSTIC, 20, -5.869769559763e-01, 1.229293844358e-05, 4.0907e+00, 1.1359e-01, + 2DIAGNOSTIC, 21, -5.869858074840e-01, 6.969772459141e-06, 4.1882e+00, 9.7440e-02, + 2DIAGNOSTIC, 22, -5.870049026123e-01, 2.687935594686e-06, 4.2878e+00, 9.9620e-02, + 2DIAGNOSTIC, 23, -5.870228945995e-01, 3.250020038932e-06, 4.4034e+00, 1.1563e-01, + 2DIAGNOSTIC, 24, -5.870358326347e-01, 4.076347801828e-06, 4.5021e+00, 9.8670e-02, + 2DIAGNOSTIC, 25, -5.870533422853e-01, 4.885225113278e-06, 4.6115e+00, 1.0943e-01, + 2DIAGNOSTIC, 26, -5.870617935781e-01, 5.449586703232e-06, 4.7057e+00, 9.4142e-02, + 2DIAGNOSTIC, 27, -5.870974716390e-01, 6.181374618684e-06, 4.8552e+00, 1.4953e-01, + 2DIAGNOSTIC, 28, -5.871174639974e-01, 6.757996185026e-06, 4.9652e+00, 1.0999e-01, + 2DIAGNOSTIC, 29, -5.871163529607e-01, 6.786234160019e-06, 5.0753e+00, 1.1009e-01, + 2DIAGNOSTIC, 30, -5.871289373888e-01, 6.504967431861e-06, 5.1846e+00, 1.0937e-01, + 2DIAGNOSTIC, 31, -5.871295184214e-01, 5.866033592407e-06, 5.2937e+00, 1.0903e-01, + 2DIAGNOSTIC, 32, -5.871262525862e-01, 5.038119035176e-06, 5.3916e+00, 9.7886e-02, + 2DIAGNOSTIC, 33, -5.871357304169e-01, 4.277513186511e-06, 5.5072e+00, 1.1568e-01, + 2DIAGNOSTIC, 34, -5.871377951837e-01, 3.457779404054e-06, 5.6195e+00, 1.1228e-01, + 2DIAGNOSTIC, 35, -5.871380203008e-01, 2.695049552397e-06, 5.7354e+00, 1.1590e-01, + 2DIAGNOSTIC, 36, -5.871385471209e-01, 1.916706109627e-06, 5.8498e+00, 1.1442e-01, + 2DIAGNOSTIC, 37, -5.871355022197e-01, 1.504982042672e-06, 5.9627e+00, 1.1288e-01, + 2DIAGNOSTIC, 38, -5.871374802550e-01, 1.335347751676e-06, 6.0911e+00, 1.2836e-01, + 2DIAGNOSTIC, 39, -5.871356235849e-01, 1.083137837598e-06, 6.2032e+00, 1.1207e-01, + Elapsed time (stage 1): 6.3332e+00 + + +Total elapsed time: 1.0722e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:35:03 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:35:04 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55ecc19a14f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 62.5211, -112.819] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ecc19a6fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f786bef6010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55ecc19a2850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 62.5211, -112.819] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ecc199ff30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7868837010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55ecc19b9b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 62.5211, -112.819] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ecc19a6550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7865178010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55ecc19bed70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 62.5211, -112.819] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ecc19bcc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f7861ab9010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55ecc19c0f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 62.5211, -112.819] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ecc19bf3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f785e3fa010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55ecc19c1540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 62.5211, -112.819] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ecc19c14d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f785ad3b010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.452053223890e-01, 1.797693134862e+308, 2.1808e-01, 2.1808e-01, + 2DIAGNOSTIC, 2, -6.484803876757e-01, 1.797693134862e+308, 2.2060e-01, 2.5198e-03, + 2DIAGNOSTIC, 3, -6.534529466521e-01, 1.797693134862e+308, 2.2303e-01, 2.4300e-03, + 2DIAGNOSTIC, 4, -6.584950353176e-01, 1.797693134862e+308, 2.2539e-01, 2.3670e-03, + 2DIAGNOSTIC, 5, -6.622078532478e-01, 1.797693134862e+308, 2.2760e-01, 2.2039e-03, + 2DIAGNOSTIC, 6, -6.634856801095e-01, 1.797693134862e+308, 2.3003e-01, 2.4290e-03, + 2DIAGNOSTIC, 7, -6.641989001389e-01, 1.797693134862e+308, 2.3250e-01, 2.4760e-03, + 2DIAGNOSTIC, 8, -6.639680686285e-01, 1.797693134862e+308, 2.3520e-01, 2.6951e-03, + 2DIAGNOSTIC, 9, -6.637859494919e-01, 1.797693134862e+308, 2.3734e-01, 2.1448e-03, + 2DIAGNOSTIC, 10, -6.637403128800e-01, 1.822385089374e-03, 2.4030e-01, 2.9562e-03, + 2DIAGNOSTIC, 11, -6.637678748818e-01, 1.136836706481e-03, 2.4282e-01, 2.5232e-03, + 2DIAGNOSTIC, 12, -6.637985237264e-01, 5.818788828058e-04, 2.4534e-01, 2.5170e-03, + 2DIAGNOSTIC, 13, -6.641918951715e-01, 2.357052961969e-04, 2.4842e-01, 3.0770e-03, + 2DIAGNOSTIC, 14, -6.643367184711e-01, 7.496085360835e-05, 2.5089e-01, 2.4712e-03, + 2DIAGNOSTIC, 15, -6.643421206583e-01, 3.496192488071e-05, 2.5593e-01, 5.0390e-03, + 2DIAGNOSTIC, 16, -6.643421382538e-01, 3.083359563899e-05, 2.5924e-01, 3.3178e-03, + 2DIAGNOSTIC, 17, -6.643421436521e-01, 4.268151019772e-05, 2.6216e-01, 2.9180e-03, + 2DIAGNOSTIC, 18, -6.643421531523e-01, 4.387614332980e-05, 2.6439e-01, 2.2321e-03, + 2DIAGNOSTIC, 19, -6.643421864695e-01, 3.688469715040e-05, 2.6662e-01, 2.2259e-03, + 2DIAGNOSTIC, 20, -6.643422991731e-01, 2.646209900875e-05, 2.6866e-01, 2.0380e-03, + 2DIAGNOSTIC, 21, -6.643426149302e-01, 1.541757645347e-05, 2.7063e-01, 1.9760e-03, + 2DIAGNOSTIC, 22, -6.643433267427e-01, 4.511477792429e-06, 2.7270e-01, 2.0621e-03, + 2DIAGNOSTIC, 23, -6.643446431513e-01, 1.563617889354e-06, 2.7474e-01, 2.0490e-03, + 2DIAGNOSTIC, 24, -6.643475458872e-01, 1.485478331939e-06, 2.7674e-01, 1.9991e-03, + 2DIAGNOSTIC, 25, -6.643491921984e-01, 1.519056531944e-06, 2.7959e-01, 2.8431e-03, + 2DIAGNOSTIC, 26, -6.643512099638e-01, 1.560888751528e-06, 2.8346e-01, 3.8681e-03, + 2DIAGNOSTIC, 27, -6.643512236223e-01, 1.568415565853e-06, 2.8553e-01, 2.0740e-03, + 2DIAGNOSTIC, 28, -6.643513046603e-01, 1.540657342709e-06, 2.8760e-01, 2.0680e-03, + 2DIAGNOSTIC, 29, -6.643513596137e-01, 1.477999653034e-06, 2.9023e-01, 2.6281e-03, + 2DIAGNOSTIC, 30, -6.643513639654e-01, 1.385119238473e-06, 2.9312e-01, 2.8968e-03, + 2DIAGNOSTIC, 31, -6.643513643560e-01, 1.272234736532e-06, 2.9610e-01, 2.9769e-03, + 2DIAGNOSTIC, 32, -6.643513644004e-01, 1.153149411647e-06, 2.9919e-01, 3.0940e-03, + 2DIAGNOSTIC, 33, -6.643513644036e-01, 1.043163631691e-06, 3.0207e-01, 2.8782e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.584893437663e-01, 1.797693134862e+308, 5.3071e-01, 2.2864e-01, + 2DIAGNOSTIC, 2, -5.590909202670e-01, 1.797693134862e+308, 5.4443e-01, 1.3721e-02, + 2DIAGNOSTIC, 3, -5.596151798035e-01, 1.797693134862e+308, 5.5784e-01, 1.3403e-02, + 2DIAGNOSTIC, 4, -5.600321059398e-01, 1.797693134862e+308, 5.7140e-01, 1.3563e-02, + 2DIAGNOSTIC, 5, -5.602476866217e-01, 1.797693134862e+308, 5.8471e-01, 1.3308e-02, + 2DIAGNOSTIC, 6, -5.604346912385e-01, 1.797693134862e+308, 6.0174e-01, 1.7029e-02, + 2DIAGNOSTIC, 7, -5.606603401431e-01, 1.797693134862e+308, 6.1698e-01, 1.5239e-02, + 2DIAGNOSTIC, 8, -5.606956499257e-01, 1.797693134862e+308, 6.3587e-01, 1.8893e-02, + 2DIAGNOSTIC, 9, -5.607370956872e-01, 1.797693134862e+308, 6.5304e-01, 1.7170e-02, + 2DIAGNOSTIC, 10, -5.607492319755e-01, 2.457827525512e-04, 6.7085e-01, 1.7813e-02, + 2DIAGNOSTIC, 11, -5.607550410415e-01, 1.595498814818e-04, 6.8659e-01, 1.5737e-02, + 2DIAGNOSTIC, 12, -5.607527513795e-01, 9.855294761960e-05, 7.0430e-01, 1.7711e-02, + 2DIAGNOSTIC, 13, -5.607434206667e-01, 5.808964369404e-05, 7.1940e-01, 1.5095e-02, + 2DIAGNOSTIC, 14, -5.607347830327e-01, 3.312363951821e-05, 7.3271e-01, 1.3311e-02, + 2DIAGNOSTIC, 15, -5.607293381962e-01, 1.569936818022e-05, 7.4848e-01, 1.5773e-02, + 2DIAGNOSTIC, 16, -5.607350043668e-01, 5.139975698537e-06, 7.6231e-01, 1.3831e-02, + 2DIAGNOSTIC, 17, -5.607305880331e-01, 2.115440040126e-06, 7.7600e-01, 1.3688e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.664283099155e-01, 1.797693134862e+308, 1.1887e+00, 4.1271e-01, + 2DIAGNOSTIC, 2, -4.671543457802e-01, 1.797693134862e+308, 1.2817e+00, 9.2968e-02, + 2DIAGNOSTIC, 3, -4.675620920301e-01, 1.797693134862e+308, 1.3758e+00, 9.4122e-02, + 2DIAGNOSTIC, 4, -4.676631208908e-01, 1.797693134862e+308, 1.4837e+00, 1.0788e-01, + 2DIAGNOSTIC, 5, -4.676729681896e-01, 1.797693134862e+308, 1.5882e+00, 1.0449e-01, + 2DIAGNOSTIC, 6, -4.676569120915e-01, 1.797693134862e+308, 1.7198e+00, 1.3164e-01, + 2DIAGNOSTIC, 7, -4.676554652038e-01, 1.797693134862e+308, 1.8524e+00, 1.3258e-01, + 2DIAGNOSTIC, 8, -4.676563460101e-01, 1.797693134862e+308, 1.9591e+00, 1.0672e-01, + 2DIAGNOSTIC, 9, -4.676545805953e-01, 1.797693134862e+308, 2.0649e+00, 1.0576e-01, + 2DIAGNOSTIC, 10, -4.676553865616e-01, 1.079960734246e-04, 2.1717e+00, 1.0678e-01, + 2DIAGNOSTIC, 11, -4.676534347899e-01, 3.420698184708e-05, 2.2715e+00, 9.9885e-02, + 2DIAGNOSTIC, 12, -4.676559680330e-01, 6.305581885940e-06, 2.3751e+00, 1.0358e-01, + 2DIAGNOSTIC, 13, -4.676563793071e-01, 1.308405104844e-06, 2.4816e+00, 1.0650e-01, + 2DIAGNOSTIC, 14, -4.676562274021e-01, 1.487768270386e-06, 2.6304e+00, 1.4877e-01, + 2DIAGNOSTIC, 15, -4.676542806611e-01, 2.055660173500e-06, 2.7494e+00, 1.1898e-01, + 2DIAGNOSTIC, 16, -4.676535793748e-01, 1.925863527555e-06, 2.8565e+00, 1.0714e-01, + 2DIAGNOSTIC, 17, -4.676529845411e-01, 1.741385572296e-06, 2.9532e+00, 9.6726e-02, + 2DIAGNOSTIC, 18, -4.676528845709e-01, 1.615450975594e-06, 3.0633e+00, 1.1009e-01, + 2DIAGNOSTIC, 19, -4.676505169967e-01, 1.384245248780e-06, 3.1820e+00, 1.1866e-01, + 2DIAGNOSTIC, 20, -4.676500552175e-01, 1.219255998719e-06, 3.2866e+00, 1.0464e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.024114152303e-01, 1.797693134862e+308, 4.7207e+00, 1.4341e+00, + 2DIAGNOSTIC, 2, -4.024228753650e-01, 1.797693134862e+308, 5.3448e+00, 6.2405e-01, + 2DIAGNOSTIC, 3, -4.024238577098e-01, 1.797693134862e+308, 6.4373e+00, 1.0925e+00, + 2DIAGNOSTIC, 4, -4.024239960491e-01, 1.797693134862e+308, 7.0667e+00, 6.2948e-01, + 2DIAGNOSTIC, 5, -4.024237609995e-01, 1.797693134862e+308, 7.8410e+00, 7.7423e-01, + 2DIAGNOSTIC, 6, -4.024237930484e-01, 1.797693134862e+308, 8.5361e+00, 6.9513e-01, + 2DIAGNOSTIC, 7, -4.024237291267e-01, 1.797693134862e+308, 9.1493e+00, 6.1316e-01, + 2DIAGNOSTIC, 8, -4.024237876144e-01, 1.797693134862e+308, 9.7221e+00, 5.7285e-01, + 2DIAGNOSTIC, 9, -4.024236004965e-01, 1.797693134862e+308, 1.0358e+01, 6.3634e-01, + 2DIAGNOSTIC, 10, -4.024236867693e-01, 4.080513210658e-06, 1.0968e+01, 6.0963e-01, + 2DIAGNOSTIC, 11, -4.024236459448e-01, 2.913990393941e-06, 1.1515e+01, 5.4702e-01, + 2DIAGNOSTIC, 12, -4.024236745637e-01, 2.614268504980e-06, 1.2148e+01, 6.3282e-01, + 2DIAGNOSTIC, 13, -4.024238454293e-01, 2.426270939201e-06, 1.2768e+01, 6.2047e-01, + 2DIAGNOSTIC, 14, -4.024237607255e-01, 2.269887972750e-06, 1.3381e+01, 6.1260e-01, + 2DIAGNOSTIC, 15, -4.024237458434e-01, 2.122964513032e-06, 1.4017e+01, 6.3626e-01, + 2DIAGNOSTIC, 16, -4.024235724260e-01, 1.988041391052e-06, 1.4650e+01, 6.3304e-01, + 2DIAGNOSTIC, 17, -4.024233988420e-01, 1.859128455767e-06, 1.5199e+01, 5.4909e-01, + 2DIAGNOSTIC, 18, -4.024232991252e-01, 1.744258376547e-06, 1.5745e+01, 5.4525e-01, + 2DIAGNOSTIC, 19, -4.024237529220e-01, 1.653381158720e-06, 1.6496e+01, 7.5158e-01, + 2DIAGNOSTIC, 20, -4.024236859480e-01, 1.573803244094e-06, 1.7201e+01, 7.0515e-01, + 2DIAGNOSTIC, 21, -4.024235730995e-01, 1.498502500717e-06, 1.7827e+01, 6.2525e-01, + 2DIAGNOSTIC, 22, -4.024234600518e-01, 1.429099294452e-06, 1.8390e+01, 5.6299e-01, + 2DIAGNOSTIC, 23, -4.024232243269e-01, 1.365337914741e-06, 1.9023e+01, 6.3384e-01, + 2DIAGNOSTIC, 24, -4.024232567202e-01, 1.306775249982e-06, 1.9590e+01, 5.6686e-01, + 2DIAGNOSTIC, 25, -4.024231684139e-01, 1.251605618167e-06, 2.0141e+01, 5.5052e-01, + 2DIAGNOSTIC, 26, -4.024232599223e-01, 1.200758857019e-06, 2.0685e+01, 5.4429e-01, + 2DIAGNOSTIC, 27, -4.024231272079e-01, 1.147996030577e-06, 2.1304e+01, 6.1889e-01, + 2DIAGNOSTIC, 28, -4.024230963000e-01, 1.098351056120e-06, 2.1931e+01, 6.2696e-01, + 2DIAGNOSTIC, 29, -4.024228272316e-01, 1.060195134836e-06, 2.2558e+01, 6.2671e-01, + 2DIAGNOSTIC, 30, -4.024230165117e-01, 1.031031141782e-06, 2.3099e+01, 5.4085e-01, + 2DIAGNOSTIC, 31, -4.024231902978e-01, 1.007706615458e-06, 2.3701e+01, 6.0201e-01, + Elapsed time (stage 0): 2.4069e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.434668735907e-01, 1.797693134862e+308, 1.8348e-01, 1.8348e-01, + 2DIAGNOSTIC, 2, -6.450378584291e-01, 1.797693134862e+308, 1.8564e-01, 2.1579e-03, + 2DIAGNOSTIC, 3, -6.469824388349e-01, 1.797693134862e+308, 1.8775e-01, 2.1160e-03, + 2DIAGNOSTIC, 4, -6.490128941975e-01, 1.797693134862e+308, 1.8972e-01, 1.9679e-03, + 2DIAGNOSTIC, 5, -6.513981443000e-01, 1.797693134862e+308, 1.9169e-01, 1.9710e-03, + 2DIAGNOSTIC, 6, -6.540326762809e-01, 1.797693134862e+308, 1.9369e-01, 2.0030e-03, + 2DIAGNOSTIC, 7, -6.554389116676e-01, 1.797693134862e+308, 1.9607e-01, 2.3739e-03, + 2DIAGNOSTIC, 8, -6.564084345664e-01, 1.797693134862e+308, 2.0292e-01, 6.8560e-03, + 2DIAGNOSTIC, 9, -6.564083469773e-01, 1.797693134862e+308, 2.0492e-01, 1.9991e-03, + 2DIAGNOSTIC, 10, -6.564085014938e-01, 1.439741879051e-03, 2.0716e-01, 2.2349e-03, + 2DIAGNOSTIC, 11, -6.564087627476e-01, 1.087636112580e-03, 2.0952e-01, 2.3599e-03, + 2DIAGNOSTIC, 12, -6.564092043039e-01, 7.533616670863e-04, 2.1188e-01, 2.3570e-03, + 2DIAGNOSTIC, 13, -6.564099503410e-01, 4.679622238709e-04, 2.1414e-01, 2.2609e-03, + 2DIAGNOSTIC, 14, -6.564112093327e-01, 2.439269805600e-04, 2.1641e-01, 2.2700e-03, + 2DIAGNOSTIC, 15, -6.564133243678e-01, 9.587931299564e-05, 2.1870e-01, 2.2910e-03, + 2DIAGNOSTIC, 16, -6.564168887964e-01, 2.877911072327e-05, 2.2101e-01, 2.3129e-03, + 2DIAGNOSTIC, 17, -6.564228844546e-01, 2.559068175562e-06, 2.2337e-01, 2.3570e-03, + 2DIAGNOSTIC, 18, -6.564329106282e-01, 2.860796247478e-06, 2.2568e-01, 2.3079e-03, + 2DIAGNOSTIC, 19, -6.564495505922e-01, 3.404516637474e-06, 2.2814e-01, 2.4641e-03, + 2DIAGNOSTIC, 20, -6.564769602822e-01, 4.325932108251e-06, 2.3057e-01, 2.4340e-03, + 2DIAGNOSTIC, 21, -6.565213060995e-01, 5.817790933435e-06, 2.3323e-01, 2.6538e-03, + 2DIAGNOSTIC, 22, -6.564454293707e-01, 5.267145556077e-06, 2.3585e-01, 2.6200e-03, + 2DIAGNOSTIC, 23, -6.564992951057e-01, 5.494512309565e-06, 2.3819e-01, 2.3470e-03, + 2DIAGNOSTIC, 24, -6.564437497513e-01, 4.298078062813e-06, 2.4048e-01, 2.2871e-03, + 2DIAGNOSTIC, 25, -6.565577315549e-01, 4.943223973833e-06, 2.4277e-01, 2.2869e-03, + 2DIAGNOSTIC, 26, -6.567038319336e-01, 7.636391760130e-06, 2.4524e-01, 2.4760e-03, + 2DIAGNOSTIC, 27, -6.566618765968e-01, 8.908387612985e-06, 2.4776e-01, 2.5139e-03, + 2DIAGNOSTIC, 28, -6.565954696961e-01, 8.563698738397e-06, 2.5027e-01, 2.5120e-03, + 2DIAGNOSTIC, 29, -6.563947572990e-01, 4.825512342148e-06, 2.5291e-01, 2.6350e-03, + 2DIAGNOSTIC, 30, -6.564939103199e-01, 2.825829444685e-06, 2.5561e-01, 2.7001e-03, + 2DIAGNOSTIC, 31, -6.564881073226e-01, 1.228143773353e-06, 2.5839e-01, 2.7852e-03, + 2DIAGNOSTIC, 32, -6.567648811864e-01, 2.410726179243e-06, 2.6133e-01, 2.9349e-03, + 2DIAGNOSTIC, 33, -6.571872452269e-01, 9.662322934284e-06, 2.6382e-01, 2.4970e-03, + 2DIAGNOSTIC, 34, -6.574782091769e-01, 1.856511752921e-05, 2.6685e-01, 3.0320e-03, + 2DIAGNOSTIC, 35, -6.576421768088e-01, 2.866062188445e-05, 2.6982e-01, 2.9669e-03, + 2DIAGNOSTIC, 36, -6.576658113025e-01, 3.761794024371e-05, 2.7220e-01, 2.3751e-03, + 2DIAGNOSTIC, 37, -6.576935787114e-01, 4.243813743068e-05, 2.7454e-01, 2.3410e-03, + 2DIAGNOSTIC, 38, -6.580705366037e-01, 4.658506702259e-05, 2.7680e-01, 2.2640e-03, + 2DIAGNOSTIC, 39, -6.585278817128e-01, 4.883834413222e-05, 2.7963e-01, 2.8241e-03, + 2DIAGNOSTIC, 40, -6.589668151721e-01, 5.221302961213e-05, 2.8240e-01, 2.7750e-03, + 2DIAGNOSTIC, 41, -6.592100809461e-01, 5.302540897282e-05, 2.8463e-01, 2.2321e-03, + 2DIAGNOSTIC, 42, -6.599351597318e-01, 5.912638044246e-05, 2.8689e-01, 2.2590e-03, + 2DIAGNOSTIC, 43, -6.603634272718e-01, 6.768817241649e-05, 2.8966e-01, 2.7640e-03, + 2DIAGNOSTIC, 44, -6.603387017753e-01, 7.194096183494e-05, 2.9217e-01, 2.5108e-03, + 2DIAGNOSTIC, 45, -6.601465014477e-01, 6.905175785612e-05, 2.9441e-01, 2.2421e-03, + 2DIAGNOSTIC, 46, -6.601187202119e-01, 5.985177861372e-05, 2.9690e-01, 2.4941e-03, + 2DIAGNOSTIC, 47, -6.597960719413e-01, 4.252972132174e-05, 2.9912e-01, 2.2211e-03, + 2DIAGNOSTIC, 48, -6.596287311040e-01, 2.374528192174e-05, 3.0160e-01, 2.4800e-03, + 2DIAGNOSTIC, 49, -6.595628196909e-01, 6.998546498497e-06, 3.0382e-01, 2.2190e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.467465938057e-01, 1.797693134862e+308, 5.1067e-01, 2.0684e-01, + 2DIAGNOSTIC, 2, -5.483961196374e-01, 1.797693134862e+308, 5.2499e-01, 1.4322e-02, + 2DIAGNOSTIC, 3, -5.504515658131e-01, 1.797693134862e+308, 5.3950e-01, 1.4509e-02, + 2DIAGNOSTIC, 4, -5.523272497230e-01, 1.797693134862e+308, 5.5451e-01, 1.5011e-02, + 2DIAGNOSTIC, 5, -5.538065102130e-01, 1.797693134862e+308, 5.6943e-01, 1.4921e-02, + 2DIAGNOSTIC, 6, -5.548383203271e-01, 1.797693134862e+308, 5.8451e-01, 1.5076e-02, + 2DIAGNOSTIC, 7, -5.562415527419e-01, 1.797693134862e+308, 6.0523e-01, 2.0724e-02, + 2DIAGNOSTIC, 8, -5.566457397546e-01, 1.797693134862e+308, 6.2252e-01, 1.7290e-02, + 2DIAGNOSTIC, 9, -5.569458305421e-01, 1.797693134862e+308, 6.3742e-01, 1.4905e-02, + 2DIAGNOSTIC, 10, -5.575005891440e-01, 1.265044088529e-03, 6.5276e-01, 1.5334e-02, + 2DIAGNOSTIC, 11, -5.579184843137e-01, 9.584030396783e-04, 6.6784e-01, 1.5083e-02, + 2DIAGNOSTIC, 12, -5.585386789128e-01, 7.127570187533e-04, 6.8245e-01, 1.4606e-02, + 2DIAGNOSTIC, 13, -5.588662625603e-01, 5.336061715647e-04, 6.9903e-01, 1.6579e-02, + 2DIAGNOSTIC, 14, -5.589924085034e-01, 4.048537666039e-04, 7.2006e-01, 2.1030e-02, + 2DIAGNOSTIC, 15, -5.591176697550e-01, 3.111489902864e-04, 7.3522e-01, 1.5164e-02, + 2DIAGNOSTIC, 16, -5.591966913511e-01, 2.351992808445e-04, 7.5040e-01, 1.5179e-02, + 2DIAGNOSTIC, 17, -5.592993569594e-01, 1.917631673839e-04, 7.6749e-01, 1.7093e-02, + 2DIAGNOSTIC, 18, -5.594112945632e-01, 1.502120014568e-04, 7.8874e-01, 2.1247e-02, + 2DIAGNOSTIC, 19, -5.594872359363e-01, 1.092844716720e-04, 8.0410e-01, 1.5360e-02, + 2DIAGNOSTIC, 20, -5.595660305403e-01, 7.863348305825e-05, 8.1908e-01, 1.4977e-02, + 2DIAGNOSTIC, 21, -5.599059405083e-01, 6.184766793078e-05, 8.3603e-01, 1.6953e-02, + 2DIAGNOSTIC, 22, -5.600258531646e-01, 5.777786765643e-05, 8.6185e-01, 2.5824e-02, + 2DIAGNOSTIC, 23, -5.600272287295e-01, 5.606577126085e-05, 8.7586e-01, 1.4011e-02, + 2DIAGNOSTIC, 24, -5.600341330426e-01, 5.228739095667e-05, 8.9016e-01, 1.4296e-02, + 2DIAGNOSTIC, 25, -5.600427122031e-01, 4.675445194065e-05, 9.0465e-01, 1.4488e-02, + 2DIAGNOSTIC, 26, -5.600527485655e-01, 3.898377637836e-05, 9.1917e-01, 1.4523e-02, + 2DIAGNOSTIC, 27, -5.600677630483e-01, 3.037646168595e-05, 9.3393e-01, 1.4756e-02, + 2DIAGNOSTIC, 28, -5.600877954105e-01, 2.210404382693e-05, 9.4929e-01, 1.5359e-02, + 2DIAGNOSTIC, 29, -5.601118513682e-01, 1.424363283023e-05, 9.6819e-01, 1.8900e-02, + 2DIAGNOSTIC, 30, -5.601130127739e-01, 6.878362885154e-06, 9.8718e-01, 1.8990e-02, + 2DIAGNOSTIC, 31, -5.601134129584e-01, 4.986796798750e-06, 1.0019e+00, 1.4735e-02, + 2DIAGNOSTIC, 32, -5.601154356098e-01, 4.784553961877e-06, 1.0168e+00, 1.4882e-02, + 2DIAGNOSTIC, 33, -5.601168416662e-01, 4.271556554900e-06, 1.0392e+00, 2.2366e-02, + 2DIAGNOSTIC, 34, -5.601168667747e-01, 3.573497744540e-06, 1.0550e+00, 1.5823e-02, + 2DIAGNOSTIC, 35, -5.601170045178e-01, 2.794408376066e-06, 1.0741e+00, 1.9116e-02, + 2DIAGNOSTIC, 36, -5.601170102878e-01, 2.024808704915e-06, 1.0967e+00, 2.2583e-02, + 2DIAGNOSTIC, 37, -5.601170107047e-01, 1.391204521674e-06, 1.1255e+00, 2.8772e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.675043013797e-01, 1.797693134862e+308, 1.5214e+00, 3.9596e-01, + 2DIAGNOSTIC, 2, -4.681940851242e-01, 1.797693134862e+308, 1.6207e+00, 9.9281e-02, + 2DIAGNOSTIC, 3, -4.687890049921e-01, 1.797693134862e+308, 1.7202e+00, 9.9467e-02, + 2DIAGNOSTIC, 4, -4.690672204479e-01, 1.797693134862e+308, 1.8203e+00, 1.0011e-01, + 2DIAGNOSTIC, 5, -4.693151386003e-01, 1.797693134862e+308, 1.9471e+00, 1.2682e-01, + 2DIAGNOSTIC, 6, -4.695359743289e-01, 1.797693134862e+308, 2.0793e+00, 1.3219e-01, + 2DIAGNOSTIC, 7, -4.695875561749e-01, 1.797693134862e+308, 2.1817e+00, 1.0243e-01, + 2DIAGNOSTIC, 8, -4.696522160794e-01, 1.797693134862e+308, 2.2862e+00, 1.0454e-01, + 2DIAGNOSTIC, 9, -4.696969131760e-01, 1.797693134862e+308, 2.3866e+00, 1.0037e-01, + 2DIAGNOSTIC, 10, -4.697217314618e-01, 2.707129836691e-04, 2.4888e+00, 1.0221e-01, + 2DIAGNOSTIC, 11, -4.697542482477e-01, 1.671692807535e-04, 2.5899e+00, 1.0104e-01, + 2DIAGNOSTIC, 12, -4.697965769447e-01, 1.025472555663e-04, 2.7046e+00, 1.1469e-01, + 2DIAGNOSTIC, 13, -4.698752497655e-01, 7.008891004982e-05, 2.8477e+00, 1.4310e-01, + 2DIAGNOSTIC, 14, -4.698816050774e-01, 4.818400199329e-05, 2.9634e+00, 1.1571e-01, + 2DIAGNOSTIC, 15, -4.698886722927e-01, 3.514782439022e-05, 3.0647e+00, 1.0138e-01, + 2DIAGNOSTIC, 16, -4.699033989663e-01, 2.964369637933e-05, 3.1918e+00, 1.2709e-01, + 2DIAGNOSTIC, 17, -4.699041504798e-01, 2.402493874196e-05, 3.3038e+00, 1.1194e-01, + 2DIAGNOSTIC, 18, -4.699078137206e-01, 1.922593017478e-05, 3.4236e+00, 1.1987e-01, + 2DIAGNOSTIC, 19, -4.699265679040e-01, 1.533933467895e-05, 3.5670e+00, 1.4338e-01, + 2DIAGNOSTIC, 20, -4.699318075703e-01, 1.148744661007e-05, 3.6695e+00, 1.0252e-01, + 2DIAGNOSTIC, 21, -4.699349230914e-01, 8.099285947340e-06, 3.7968e+00, 1.2722e-01, + 2DIAGNOSTIC, 22, -4.699353355808e-01, 5.529380621573e-06, 3.9117e+00, 1.1496e-01, + 2DIAGNOSTIC, 23, -4.699354945506e-01, 4.878920415723e-06, 4.0257e+00, 1.1395e-01, + 2DIAGNOSTIC, 24, -4.699329559880e-01, 4.043528052930e-06, 4.1285e+00, 1.0286e-01, + 2DIAGNOSTIC, 25, -4.699332400929e-01, 3.187134296659e-06, 4.2310e+00, 1.0252e-01, + 2DIAGNOSTIC, 26, -4.699334678158e-01, 2.569868931095e-06, 4.3347e+00, 1.0368e-01, + 2DIAGNOSTIC, 27, -4.699336786884e-01, 1.896396698398e-06, 4.4564e+00, 1.2169e-01, + 2DIAGNOSTIC, 28, -4.699336993362e-01, 1.274000674803e-06, 4.5774e+00, 1.2102e-01, + 2DIAGNOSTIC, 29, -4.699338087358e-01, 1.074018142193e-06, 4.9267e+00, 3.4931e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.028563272448e-01, 1.797693134862e+308, 6.2812e+00, 1.3545e+00, + 2DIAGNOSTIC, 2, -4.030311182063e-01, 1.797693134862e+308, 6.8996e+00, 6.1838e-01, + 2DIAGNOSTIC, 3, -4.031630537422e-01, 1.797693134862e+308, 7.6704e+00, 7.7078e-01, + 2DIAGNOSTIC, 4, -4.032290918928e-01, 1.797693134862e+308, 8.5203e+00, 8.4993e-01, + 2DIAGNOSTIC, 5, -4.032530005946e-01, 1.797693134862e+308, 9.1570e+00, 6.3668e-01, + 2DIAGNOSTIC, 6, -4.033183892744e-01, 1.797693134862e+308, 9.7968e+00, 6.3987e-01, + 2DIAGNOSTIC, 7, -4.033657815840e-01, 1.797693134862e+308, 1.0869e+01, 1.0725e+00, + 2DIAGNOSTIC, 8, -4.033672291085e-01, 1.797693134862e+308, 1.1626e+01, 7.5622e-01, + 2DIAGNOSTIC, 9, -4.033668755110e-01, 1.797693134862e+308, 1.2381e+01, 7.5524e-01, + 2DIAGNOSTIC, 10, -4.033664045386e-01, 7.517016208100e-05, 1.3138e+01, 7.5746e-01, + 2DIAGNOSTIC, 11, -4.033663606635e-01, 4.587181093409e-05, 1.4194e+01, 1.0554e+00, + 2DIAGNOSTIC, 12, -4.033662436518e-01, 2.764850030899e-05, 1.4894e+01, 6.9984e-01, + 2DIAGNOSTIC, 13, -4.033661266428e-01, 1.707850304267e-05, 1.5581e+01, 6.8749e-01, + 2DIAGNOSTIC, 14, -4.033660096376e-01, 1.005273841463e-05, 1.6266e+01, 6.8458e-01, + 2DIAGNOSTIC, 15, -4.033655973925e-01, 4.297926865404e-06, 1.6901e+01, 6.3513e-01, + 2DIAGNOSTIC, 16, -4.033656259522e-01, 1.885550232478e-06, 1.7520e+01, 6.1955e-01, + 2DIAGNOSTIC, 17, -4.033656600589e-01, 1.730153015606e-06, 1.8133e+01, 6.1250e-01, + 2DIAGNOSTIC, 18, -4.033655748392e-01, 1.658393536275e-06, 1.8746e+01, 6.1342e-01, + 2DIAGNOSTIC, 19, -4.033656726702e-01, 1.595497408718e-06, 1.9403e+01, 6.5696e-01, + 2DIAGNOSTIC, 20, -4.033656943880e-01, 1.530472061369e-06, 2.0070e+01, 6.6706e-01, + 2DIAGNOSTIC, 21, -4.033656853062e-01, 1.475484564813e-06, 2.0765e+01, 6.9440e-01, + 2DIAGNOSTIC, 22, -4.033654341188e-01, 1.417295290136e-06, 2.1468e+01, 7.0365e-01, + 2DIAGNOSTIC, 23, -4.033656118758e-01, 1.368946047089e-06, 2.2152e+01, 6.8327e-01, + 2DIAGNOSTIC, 24, -4.033655994052e-01, 1.322254358109e-06, 2.2852e+01, 7.0043e-01, + 2DIAGNOSTIC, 25, -4.033656131365e-01, 1.268263726109e-06, 2.3564e+01, 7.1165e-01, + 2DIAGNOSTIC, 26, -4.033654846677e-01, 1.216203922370e-06, 2.4259e+01, 6.9537e-01, + 2DIAGNOSTIC, 27, -4.033654807495e-01, 1.169779465945e-06, 2.4945e+01, 6.8649e-01, + 2DIAGNOSTIC, 28, -4.033655030971e-01, 1.125743064427e-06, 2.5646e+01, 7.0026e-01, + 2DIAGNOSTIC, 29, -4.033653234906e-01, 1.083547667313e-06, 2.6357e+01, 7.1177e-01, + 2DIAGNOSTIC, 30, -4.033652583847e-01, 1.044555854819e-06, 2.7073e+01, 7.1527e-01, + 2DIAGNOSTIC, 31, -4.033651655097e-01, 1.007524364188e-06, 2.7722e+01, 6.4906e-01, + Elapsed time (stage 1): 2.8129e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.999264890198e-01, 1.797693134862e+308, 2.6167e-01, 2.6167e-01, + 1DIAGNOSTIC, 2, -9.106170836283e-01, 1.797693134862e+308, 3.6323e-01, 1.0157e-01, + 1DIAGNOSTIC, 3, -9.188857913200e-01, 1.797693134862e+308, 4.5751e-01, 9.4278e-02, + 1DIAGNOSTIC, 4, -9.256371086518e-01, 1.797693134862e+308, 5.5765e-01, 1.0014e-01, + 1DIAGNOSTIC, 5, -9.311936696837e-01, 1.797693134862e+308, 6.5510e-01, 9.7448e-02, + 1DIAGNOSTIC, 6, -9.350319063717e-01, 1.797693134862e+308, 7.4832e-01, 9.3226e-02, + 1DIAGNOSTIC, 7, -9.386329459549e-01, 1.797693134862e+308, 8.4394e-01, 9.5614e-02, + 1DIAGNOSTIC, 8, -9.414679579315e-01, 1.797693134862e+308, 9.3862e-01, 9.4678e-02, + 1DIAGNOSTIC, 9, -9.441150544483e-01, 1.797693134862e+308, 1.0372e+00, 9.8597e-02, + 1DIAGNOSTIC, 10, -9.465357910194e-01, 3.013793032960e-03, 1.1394e+00, 1.0220e-01, + 1DIAGNOSTIC, 11, -9.487054389277e-01, 2.240023778348e-03, 1.2324e+00, 9.3015e-02, + 1DIAGNOSTIC, 12, -9.506769120523e-01, 1.714932153376e-03, 1.3283e+00, 9.5915e-02, + 1DIAGNOSTIC, 13, -9.523170296076e-01, 1.346495958988e-03, 1.4223e+00, 9.3941e-02, + 1DIAGNOSTIC, 14, -9.537518241588e-01, 1.084960995062e-03, 1.5141e+00, 9.1797e-02, + 1DIAGNOSTIC, 15, -9.548614532927e-01, 8.935965383867e-04, 1.6116e+00, 9.7484e-02, + 1DIAGNOSTIC, 16, -9.558913235288e-01, 7.358135032336e-04, 1.7118e+00, 1.0020e-01, + 1DIAGNOSTIC, 17, -9.555159970732e-01, 5.859956809964e-04, 1.8089e+00, 9.7150e-02, + 1DIAGNOSTIC, 18, -9.560326043880e-01, 4.553015133473e-04, 1.9089e+00, 1.0001e-01, + 1DIAGNOSTIC, 19, -9.556555238074e-01, 3.319324845466e-04, 2.0052e+00, 9.6309e-02, + 1DIAGNOSTIC, 20, -9.564006280734e-01, 2.377588588357e-04, 2.1042e+00, 9.8912e-02, + 1DIAGNOSTIC, 21, -9.560199678592e-01, 1.556727064079e-04, 2.2022e+00, 9.8069e-02, + 1DIAGNOSTIC, 22, -9.567086366070e-01, 1.032487104435e-04, 2.2982e+00, 9.5986e-02, + 1DIAGNOSTIC, 23, -9.563211480627e-01, 6.195677648300e-05, 2.4065e+00, 1.0825e-01, + 1DIAGNOSTIC, 24, -9.569611597167e-01, 4.436714836568e-05, 2.5030e+00, 9.6542e-02, + 1DIAGNOSTIC, 25, -9.565506668912e-01, 3.201351513094e-05, 2.6094e+00, 1.0636e-01, + 1DIAGNOSTIC, 26, -9.570616421266e-01, 3.584435116319e-05, 2.7153e+00, 1.0598e-01, + 1DIAGNOSTIC, 27, -9.566636740631e-01, 2.724242751580e-05, 2.8075e+00, 9.2148e-02, + 1DIAGNOSTIC, 28, -9.572542982159e-01, 2.896538563393e-05, 2.9090e+00, 1.0152e-01, + 1DIAGNOSTIC, 29, -9.568382471727e-01, 1.935711796356e-05, 3.0124e+00, 1.0335e-01, + 1DIAGNOSTIC, 30, -9.572735295305e-01, 2.076439320451e-05, 3.1092e+00, 9.6831e-02, + 1DIAGNOSTIC, 31, -9.568701470890e-01, 1.236113828466e-05, 3.2057e+00, 9.6469e-02, + 1DIAGNOSTIC, 32, -9.574581549056e-01, 1.561653671737e-05, 3.3037e+00, 9.8079e-02, + 1DIAGNOSTIC, 33, -9.570285100822e-01, 9.529576518945e-06, 3.4037e+00, 9.9969e-02, + 1DIAGNOSTIC, 34, -9.573944118636e-01, 1.210428568924e-05, 3.5028e+00, 9.9044e-02, + 1DIAGNOSTIC, 35, -9.570071362331e-01, 6.465885786920e-06, 3.6028e+00, 1.0005e-01, + 1DIAGNOSTIC, 36, -9.575739522013e-01, 9.780502121921e-06, 3.7005e+00, 9.7738e-02, + 1DIAGNOSTIC, 37, -9.571268418775e-01, 4.930193763332e-06, 3.7980e+00, 9.7452e-02, + 1DIAGNOSTIC, 38, -9.573630452718e-01, 6.684880537327e-06, 3.8963e+00, 9.8293e-02, + 1DIAGNOSTIC, 39, -9.569457628425e-01, 1.288251232936e-06, 3.9979e+00, 1.0165e-01, + 1DIAGNOSTIC, 40, -9.574439419947e-01, 3.271756320932e-06, 4.1333e+00, 1.3534e-01, + 1DIAGNOSTIC, 41, -9.570383837690e-01, -1.260491139920e-06, 4.2318e+00, 9.8494e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.092627186366e-01, 1.797693134862e+308, 5.0798e+00, 8.4800e-01, + 1DIAGNOSTIC, 2, -9.133629361397e-01, 1.797693134862e+308, 5.7585e+00, 6.7873e-01, + 1DIAGNOSTIC, 3, -9.170526410697e-01, 1.797693134862e+308, 6.4281e+00, 6.6961e-01, + 1DIAGNOSTIC, 4, -9.201434117534e-01, 1.797693134862e+308, 7.1071e+00, 6.7901e-01, + 1DIAGNOSTIC, 5, -9.228503978360e-01, 1.797693134862e+308, 7.7896e+00, 6.8249e-01, + 1DIAGNOSTIC, 6, -9.252943100626e-01, 1.797693134862e+308, 8.4597e+00, 6.7009e-01, + 1DIAGNOSTIC, 7, -9.272581071556e-01, 1.797693134862e+308, 9.1255e+00, 6.6584e-01, + 1DIAGNOSTIC, 8, -9.287823651616e-01, 1.797693134862e+308, 9.8027e+00, 6.7711e-01, + 1DIAGNOSTIC, 9, -9.301657802531e-01, 1.797693134862e+308, 1.0476e+01, 6.7362e-01, + 1DIAGNOSTIC, 10, -9.312576926941e-01, 1.501488374666e-03, 1.1158e+01, 6.8127e-01, + 1DIAGNOSTIC, 11, -9.321925039964e-01, 1.160423695639e-03, 1.1837e+01, 6.7956e-01, + 1DIAGNOSTIC, 12, -9.330273568703e-01, 8.977738726732e-04, 1.2517e+01, 6.7978e-01, + 1DIAGNOSTIC, 13, -9.337571497081e-01, 6.983851465906e-04, 1.3194e+01, 6.7741e-01, + 1DIAGNOSTIC, 14, -9.344075952423e-01, 5.456091533531e-04, 1.3878e+01, 6.8406e-01, + 1DIAGNOSTIC, 15, -9.349994432516e-01, 4.303593489985e-04, 1.4561e+01, 6.8265e-01, + 1DIAGNOSTIC, 16, -9.355204821797e-01, 3.465296057328e-04, 1.5276e+01, 7.1532e-01, + 1DIAGNOSTIC, 17, -9.359929795167e-01, 2.843800623191e-04, 1.5962e+01, 6.8612e-01, + 1DIAGNOSTIC, 18, -9.364192455490e-01, 2.358441179055e-04, 1.6647e+01, 6.8428e-01, + 1DIAGNOSTIC, 19, -9.368020946717e-01, 1.989100296708e-04, 1.7331e+01, 6.8445e-01, + 1DIAGNOSTIC, 20, -9.371455436006e-01, 1.690758492541e-04, 1.8008e+01, 6.7635e-01, + 1DIAGNOSTIC, 21, -9.374560965477e-01, 1.444223674532e-04, 1.8688e+01, 6.8000e-01, + 1DIAGNOSTIC, 22, -9.377361402096e-01, 1.239976357169e-04, 1.9363e+01, 6.7573e-01, + 1DIAGNOSTIC, 23, -9.379887303396e-01, 1.067948005150e-04, 2.0036e+01, 6.7314e-01, + 1DIAGNOSTIC, 24, -9.382176286145e-01, 9.221170424757e-05, 2.0710e+01, 6.7373e-01, + 1DIAGNOSTIC, 25, -9.384228717240e-01, 7.989306583114e-05, 2.1375e+01, 6.6536e-01, + 1DIAGNOSTIC, 26, -9.386114000360e-01, 6.936711937114e-05, 2.2053e+01, 6.7768e-01, + 1DIAGNOSTIC, 27, -9.387793308008e-01, 6.035931176882e-05, 2.2719e+01, 6.6598e-01, + 1DIAGNOSTIC, 28, -9.389339346019e-01, 5.267194002639e-05, 2.3387e+01, 6.6817e-01, + 1DIAGNOSTIC, 29, -9.390696018321e-01, 4.603959506946e-05, 2.4070e+01, 6.8253e-01, + 1DIAGNOSTIC, 30, -9.391997978771e-01, 4.036126086344e-05, 2.4748e+01, 6.7863e-01, + 1DIAGNOSTIC, 31, -9.393164378765e-01, 3.548134708342e-05, 2.5428e+01, 6.7946e-01, + 1DIAGNOSTIC, 32, -9.394212270147e-01, 3.126470197402e-05, 2.6105e+01, 6.7682e-01, + 1DIAGNOSTIC, 33, -9.395164987330e-01, 2.760856849394e-05, 2.6778e+01, 6.7316e-01, + 1DIAGNOSTIC, 34, -9.396129173706e-01, 2.452154871033e-05, 2.7456e+01, 6.7778e-01, + 1DIAGNOSTIC, 35, -9.396957365138e-01, 2.184494648294e-05, 2.8160e+01, 7.0403e-01, + 1DIAGNOSTIC, 36, -9.397801376221e-01, 1.960934616747e-05, 2.8844e+01, 6.8466e-01, + 1DIAGNOSTIC, 37, -9.398485766907e-01, 1.763384140073e-05, 2.9530e+01, 6.8523e-01, + 1DIAGNOSTIC, 38, -9.399191316075e-01, 1.595095928488e-05, 3.0213e+01, 6.8371e-01, + 1DIAGNOSTIC, 39, -9.399774173304e-01, 1.440757041614e-05, 3.0899e+01, 6.8594e-01, + 1DIAGNOSTIC, 40, -9.400297406475e-01, 1.301732570850e-05, 3.1572e+01, 6.7321e-01, + 1DIAGNOSTIC, 41, -9.400790562789e-01, 1.174695807108e-05, 3.2250e+01, 6.7746e-01, + 1DIAGNOSTIC, 42, -9.401253234337e-01, 1.057169242105e-05, 3.2930e+01, 6.7965e-01, + 1DIAGNOSTIC, 43, -9.401676530525e-01, 9.474028957228e-06, 3.3615e+01, 6.8506e-01, + 1DIAGNOSTIC, 44, -9.402078714028e-01, 8.525999969630e-06, 3.4288e+01, 6.7378e-01, + 1DIAGNOSTIC, 45, -9.402445375994e-01, 7.671061925105e-06, 3.4954e+01, 6.6514e-01, + 1DIAGNOSTIC, 46, -9.402777092701e-01, 6.956544120397e-06, 3.5632e+01, 6.7866e-01, + 1DIAGNOSTIC, 47, -9.403063206149e-01, 6.291699934036e-06, 3.6313e+01, 6.8049e-01, + 1DIAGNOSTIC, 48, -9.403333632820e-01, 5.728487385639e-06, 3.6986e+01, 6.7317e-01, + 1DIAGNOSTIC, 49, -9.403576154121e-01, 5.209077393434e-06, 3.7667e+01, 6.8064e-01, + 1DIAGNOSTIC, 50, -9.403756232760e-01, 4.695475956655e-06, 3.8345e+01, 6.7820e-01, + 1DIAGNOSTIC, 51, -9.403963159324e-01, 4.225896753553e-06, 3.9031e+01, 6.8621e-01, + 1DIAGNOSTIC, 52, -9.404118098644e-01, 3.785344797488e-06, 3.9705e+01, 6.7383e-01, + 1DIAGNOSTIC, 53, -9.404341634014e-01, 3.423892154825e-06, 4.0382e+01, 6.7735e-01, + 1DIAGNOSTIC, 54, -9.404516637554e-01, 3.124889433881e-06, 4.1054e+01, 6.7178e-01, + 1DIAGNOSTIC, 55, -9.404666034788e-01, 2.875194812513e-06, 4.1731e+01, 6.7727e-01, + 1DIAGNOSTIC, 56, -9.404829434270e-01, 2.680329987636e-06, 4.2411e+01, 6.7985e-01, + 1DIAGNOSTIC, 57, -9.405026803558e-01, 2.543957235500e-06, 4.3075e+01, 6.6385e-01, + 1DIAGNOSTIC, 58, -9.405217311212e-01, 2.459005535152e-06, 4.3744e+01, 6.6963e-01, + 1DIAGNOSTIC, 59, -9.405384911879e-01, 2.402047761037e-06, 4.4423e+01, 6.7849e-01, + 1DIAGNOSTIC, 60, -9.405555022430e-01, 2.343514003779e-06, 4.5092e+01, 6.6947e-01, + 1DIAGNOSTIC, 61, -9.405648785589e-01, 2.261008396582e-06, 4.5757e+01, 6.6430e-01, + 1DIAGNOSTIC, 62, -9.405809855896e-01, 2.166574642574e-06, 4.6430e+01, 6.7307e-01, + 1DIAGNOSTIC, 63, -9.405980417713e-01, 2.103288738144e-06, 4.7116e+01, 6.8630e-01, + 1DIAGNOSTIC, 64, -9.406135715176e-01, 2.042743612450e-06, 4.7787e+01, 6.7102e-01, + 1DIAGNOSTIC, 65, -9.406218166759e-01, 1.942371246889e-06, 4.8451e+01, 6.6370e-01, + 1DIAGNOSTIC, 66, -9.406345063807e-01, 1.838250894150e-06, 4.9126e+01, 6.7539e-01, + 1DIAGNOSTIC, 67, -9.406540924328e-01, 1.782852649301e-06, 4.9789e+01, 6.6308e-01, + 1DIAGNOSTIC, 68, -9.406677610576e-01, 1.745656002559e-06, 5.0467e+01, 6.7787e-01, + 1DIAGNOSTIC, 69, -9.406810084873e-01, 1.716681150749e-06, 5.1141e+01, 6.7391e-01, + 1DIAGNOSTIC, 70, -9.406968131389e-01, 1.710173471545e-06, 5.1815e+01, 6.7431e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.947219900846e-01, 1.797693134862e+308, 5.7445e+01, 5.6297e+00, + 1DIAGNOSTIC, 2, -8.976916523123e-01, 1.797693134862e+308, 6.2809e+01, 5.3643e+00, + 1DIAGNOSTIC, 3, -9.007328138035e-01, 1.797693134862e+308, 6.8235e+01, 5.4259e+00, + 1DIAGNOSTIC, 4, -9.035199129638e-01, 1.797693134862e+308, 7.3638e+01, 5.4027e+00, + 1DIAGNOSTIC, 5, -9.058786306240e-01, 1.797693134862e+308, 7.9038e+01, 5.3996e+00, + 1DIAGNOSTIC, 6, -9.079126593794e-01, 1.797693134862e+308, 8.4410e+01, 5.3724e+00, + 1DIAGNOSTIC, 7, -9.096637817537e-01, 1.797693134862e+308, 8.9859e+01, 5.4490e+00, + 1DIAGNOSTIC, 8, -9.111976614007e-01, 1.797693134862e+308, 9.5279e+01, 5.4203e+00, + 1DIAGNOSTIC, 9, -9.124541872292e-01, 1.797693134862e+308, 1.0075e+02, 5.4689e+00, + 1DIAGNOSTIC, 10, -9.135785223468e-01, 1.330667557457e-03, 1.0616e+02, 5.4101e+00, + 1DIAGNOSTIC, 11, -9.144746610190e-01, 1.058882310833e-03, 1.1160e+02, 5.4463e+00, + 1DIAGNOSTIC, 12, -9.152905365752e-01, 8.356134293577e-04, 1.1700e+02, 5.3969e+00, + 1DIAGNOSTIC, 13, -9.160364150793e-01, 6.617729404963e-04, 1.2245e+02, 5.4494e+00, + 1DIAGNOSTIC, 14, -9.167317243240e-01, 5.299585753984e-04, 1.2788e+02, 5.4273e+00, + 1DIAGNOSTIC, 15, -9.173732849454e-01, 4.294644463438e-04, 1.3331e+02, 5.4301e+00, + 1DIAGNOSTIC, 16, -9.179721010508e-01, 3.532566412235e-04, 1.3871e+02, 5.4038e+00, + 1DIAGNOSTIC, 17, -9.185383753528e-01, 2.958025500925e-04, 1.4418e+02, 5.4718e+00, + 1DIAGNOSTIC, 18, -9.190679453381e-01, 2.529889874371e-04, 1.4963e+02, 5.4452e+00, + 1DIAGNOSTIC, 19, -9.195657450014e-01, 2.198599141807e-04, 1.5504e+02, 5.4119e+00, + 1DIAGNOSTIC, 20, -9.200335063217e-01, 1.943409521844e-04, 1.6044e+02, 5.3966e+00, + 1DIAGNOSTIC, 21, -9.204798187052e-01, 1.729993199845e-04, 1.6590e+02, 5.4662e+00, + 1DIAGNOSTIC, 22, -9.209048955347e-01, 1.549607015795e-04, 1.7135e+02, 5.4498e+00, + 1DIAGNOSTIC, 23, -9.213022465940e-01, 1.394249044226e-04, 1.7678e+02, 5.4251e+00, + 1DIAGNOSTIC, 24, -9.216827859766e-01, 1.260411613359e-04, 1.8220e+02, 5.4186e+00, + 1DIAGNOSTIC, 25, -9.220464223548e-01, 1.143856970163e-04, 1.8764e+02, 5.4446e+00, + 1DIAGNOSTIC, 26, -9.223924543020e-01, 1.041578212674e-04, 1.9312e+02, 5.4731e+00, + 1DIAGNOSTIC, 27, -9.227267721676e-01, 9.524202784203e-05, 1.9856e+02, 5.4435e+00, + 1DIAGNOSTIC, 28, -9.230476559436e-01, 8.742127532491e-05, 2.0398e+02, 5.4204e+00, + 1DIAGNOSTIC, 29, -9.233562467144e-01, 8.053095021179e-05, 2.0946e+02, 5.4820e+00, + 1DIAGNOSTIC, 30, -9.236535770463e-01, 7.441696450127e-05, 2.1489e+02, 5.4270e+00, + 1DIAGNOSTIC, 31, -9.239418826900e-01, 6.902435430203e-05, 2.2032e+02, 5.4298e+00, + 1DIAGNOSTIC, 32, -9.242216217519e-01, 6.428272211934e-05, 2.2581e+02, 5.4901e+00, + 1DIAGNOSTIC, 33, -9.244796942240e-01, 5.991378021976e-05, 2.3126e+02, 5.4480e+00, + 1DIAGNOSTIC, 34, -9.247215086271e-01, 5.581771805716e-05, 2.3668e+02, 5.4202e+00, + 1DIAGNOSTIC, 35, -9.249435700247e-01, 5.187070211461e-05, 2.4218e+02, 5.4997e+00, + 1DIAGNOSTIC, 36, -9.251462090054e-01, 4.796555399040e-05, 2.4762e+02, 5.4454e+00, + 1DIAGNOSTIC, 37, -9.253396624065e-01, 4.416014958200e-05, 2.5307e+02, 5.4500e+00, + 1DIAGNOSTIC, 38, -9.255125113504e-01, 4.040877583333e-05, 2.5852e+02, 5.4476e+00, + 1DIAGNOSTIC, 39, -9.256832818308e-01, 3.684415439529e-05, 2.6401e+02, 5.4873e+00, + 1DIAGNOSTIC, 40, -9.258380352948e-01, 3.348068203151e-05, 2.6945e+02, 5.4488e+00, + 1DIAGNOSTIC, 41, -9.259827011547e-01, 3.039336965235e-05, 2.7495e+02, 5.4945e+00, + 1DIAGNOSTIC, 42, -9.261209244749e-01, 2.767128407789e-05, 2.8036e+02, 5.4102e+00, + 1DIAGNOSTIC, 43, -9.262526777972e-01, 2.527725109159e-05, 2.8582e+02, 5.4631e+00, + 1DIAGNOSTIC, 44, -9.263775269827e-01, 2.319470284622e-05, 2.9122e+02, 5.3957e+00, + 1DIAGNOSTIC, 45, -9.264986222343e-01, 2.138785712345e-05, 2.9670e+02, 5.4774e+00, + 1DIAGNOSTIC, 46, -9.266136048501e-01, 1.979104947115e-05, 3.0211e+02, 5.4174e+00, + 1DIAGNOSTIC, 47, -9.267196768640e-01, 1.838289998872e-05, 3.0757e+02, 5.4566e+00, + 1DIAGNOSTIC, 48, -9.268210299333e-01, 1.708245370012e-05, 3.1299e+02, 5.4203e+00, + 1DIAGNOSTIC, 49, -9.269190287038e-01, 1.593837763618e-05, 3.1842e+02, 5.4338e+00, + 1DIAGNOSTIC, 50, -9.270142361849e-01, 1.490159679252e-05, 3.2385e+02, 5.4224e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.958383708137e-01, 1.797693134862e+308, 3.6952e+02, 4.5671e+01, + 1DIAGNOSTIC, 2, -8.969780782196e-01, 1.797693134862e+308, 4.1391e+02, 4.4392e+01, + 1DIAGNOSTIC, 3, -8.984165473920e-01, 1.797693134862e+308, 4.5825e+02, 4.4340e+01, + 1DIAGNOSTIC, 4, -8.998855875574e-01, 1.797693134862e+308, 5.0256e+02, 4.4311e+01, + 1DIAGNOSTIC, 5, -9.014060300842e-01, 1.797693134862e+308, 5.4682e+02, 4.4262e+01, + 1DIAGNOSTIC, 6, -9.029837684543e-01, 1.797693134862e+308, 5.9098e+02, 4.4159e+01, + 1DIAGNOSTIC, 7, -9.044481334558e-01, 1.797693134862e+308, 6.3534e+02, 4.4355e+01, + 1DIAGNOSTIC, 8, -9.057611651716e-01, 1.797693134862e+308, 6.7966e+02, 4.4321e+01, + 1DIAGNOSTIC, 9, -9.069765239903e-01, 1.797693134862e+308, 7.2480e+02, 4.5147e+01, + 1DIAGNOSTIC, 10, -9.080934911414e-01, 9.022786631810e-04, 7.6967e+02, 4.4869e+01, + 1DIAGNOSTIC, 11, -9.089906715399e-01, 7.963010703045e-04, 8.1396e+02, 4.4286e+01, + 1DIAGNOSTIC, 12, -9.097714472604e-01, 6.866090016282e-04, 8.5828e+02, 4.4323e+01, + 1DIAGNOSTIC, 13, -9.104348639340e-01, 5.824233941352e-04, 9.0279e+02, 4.4507e+01, + 1DIAGNOSTIC, 14, -9.109880371383e-01, 4.853794391998e-04, 9.4807e+02, 4.5276e+01, + 1DIAGNOSTIC, 15, -9.114494328814e-01, 3.981812110033e-04, 9.9266e+02, 4.4594e+01, + 1DIAGNOSTIC, 16, -9.118465945126e-01, 3.239218102552e-04, 1.0374e+03, 4.4750e+01, + 1DIAGNOSTIC, 17, -9.121016864472e-01, 2.601907881476e-04, 1.0819e+03, 4.4443e+01, + 1DIAGNOSTIC, 18, -9.123327771586e-01, 2.063288995368e-04, 1.1269e+03, 4.5048e+01, + 1DIAGNOSTIC, 19, -9.125247922841e-01, 1.621354410198e-04, 1.1719e+03, 4.4976e+01, + 1DIAGNOSTIC, 20, -9.127016785735e-01, 1.275208626519e-04, 1.2169e+03, 4.5069e+01, + Elapsed time (stage 2): 1217 + + +Total elapsed time: 1270 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:56:50 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:56:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:56:53 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:56:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:00 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1526 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:04 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1615 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:04 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:07 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:07 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1662 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:07 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1668 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:07 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:27 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:30 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:30 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:31 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:32 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:35 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:35 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:36 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:37 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:49 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC004 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:00 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC004 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:00 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC004 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 2483 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:03 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:03 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 2525 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:04 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:04 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC004_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 70.583 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/logs/proc_func_18-03-2024-22537.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:10 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC004 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/QC/sub-PNC004_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC004* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 70.633 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC004_ses-02 +========================reprocessing without filter=================== +sub-PNC004_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC004 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC004 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC004 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC004 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:19 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:19 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz is 34.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:00:29 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:02:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:02:55 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.32 (mm) at sub-brick 47 +++ Max delta displ in automask = 1.14 (mm) at sub-brick 47 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:16:07 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:16:26 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz is 34.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:18:42 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:20:58 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz is 34.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:23:15 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.489 -1.591 2.790 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.2 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.593 -1.842 4.376 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 73.8 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:28:10 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:28:39 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55a25cca76f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [104.354, 68.1223, -106.575] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a25cb1e730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a25ccbe320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55a25ccaafa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [73.5664, 122.148, -125.342] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a25ccb0e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a25d4bb230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55a25d4b95c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [104.354, 68.1223, -106.575] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a25ccad3f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a25dfe5450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55a25d4b7da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [73.5664, 122.148, -125.342] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a25ccb4360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a25e7df780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.492844403833e-01, 1.797693134862e+308, 4.5986e-02, 4.5986e-02, + 2DIAGNOSTIC, 2, -7.519166954467e-01, 1.797693134862e+308, 4.7570e-02, 1.5838e-03, + 2DIAGNOSTIC, 3, -7.550263209916e-01, 1.797693134862e+308, 4.9382e-02, 1.8120e-03, + 2DIAGNOSTIC, 4, -7.559456131552e-01, 1.797693134862e+308, 5.0948e-02, 1.5659e-03, + 2DIAGNOSTIC, 5, -7.565178525435e-01, 1.797693134862e+308, 5.2528e-02, 1.5800e-03, + 2DIAGNOSTIC, 6, -7.584995622187e-01, 1.797693134862e+308, 5.4037e-02, 1.5090e-03, + 2DIAGNOSTIC, 7, -7.611040249975e-01, 1.797693134862e+308, 5.5548e-02, 1.5111e-03, + 2DIAGNOSTIC, 8, -7.670635262734e-01, 1.797693134862e+308, 5.6792e-02, 1.2441e-03, + 2DIAGNOSTIC, 9, -7.746968022835e-01, 1.797693134862e+308, 5.8502e-02, 1.7099e-03, + 2DIAGNOSTIC, 10, -7.802906134409e-01, 2.322074322797e-03, 6.0230e-02, 1.7281e-03, + 2DIAGNOSTIC, 11, -7.881416482448e-01, 2.602349113646e-03, 6.1884e-02, 1.6539e-03, + 2DIAGNOSTIC, 12, -7.916570710116e-01, 2.785784761807e-03, 6.4037e-02, 2.1532e-03, + 2DIAGNOSTIC, 13, -7.981619184121e-01, 2.960135151724e-03, 6.5449e-02, 1.4122e-03, + 2DIAGNOSTIC, 14, -8.026057079888e-01, 2.977234357441e-03, 6.6903e-02, 1.4539e-03, + 2DIAGNOSTIC, 15, -8.079952454430e-01, 2.864163149551e-03, 6.8789e-02, 1.8859e-03, + 2DIAGNOSTIC, 16, -8.138547297901e-01, 2.681549639310e-03, 7.1247e-02, 2.4581e-03, + 2DIAGNOSTIC, 17, -8.141301991770e-01, 2.334457922318e-03, 7.2707e-02, 1.4601e-03, + 2DIAGNOSTIC, 18, -8.175200070120e-01, 2.001194185547e-03, 7.4132e-02, 1.4250e-03, + 2DIAGNOSTIC, 19, -8.195628359061e-01, 1.702175303601e-03, 7.5624e-02, 1.4920e-03, + 2DIAGNOSTIC, 20, -8.203095814074e-01, 1.387628864253e-03, 7.7149e-02, 1.5249e-03, + 2DIAGNOSTIC, 21, -8.211324331238e-01, 1.124628655170e-03, 7.8710e-02, 1.5612e-03, + 2DIAGNOSTIC, 22, -8.222290515739e-01, 8.564295995314e-04, 8.0197e-02, 1.4870e-03, + 2DIAGNOSTIC, 23, -8.266291417674e-01, 7.026238988876e-04, 8.1651e-02, 1.4541e-03, + 2DIAGNOSTIC, 24, -8.314554378589e-01, 6.318338426154e-04, 8.4517e-02, 2.8660e-03, + 2DIAGNOSTIC, 25, -8.336617999117e-01, 6.139038149424e-04, 8.6025e-02, 1.5080e-03, + 2DIAGNOSTIC, 26, -8.344284145877e-01, 6.326244935230e-04, 8.7548e-02, 1.5230e-03, + 2DIAGNOSTIC, 27, -8.368960089664e-01, 6.265397974904e-04, 8.9031e-02, 1.4830e-03, + 2DIAGNOSTIC, 28, -8.432154859568e-01, 6.834213561714e-04, 9.1456e-02, 2.4250e-03, + 2DIAGNOSTIC, 29, -8.446083135201e-01, 7.110231584243e-04, 9.2925e-02, 1.4689e-03, + 2DIAGNOSTIC, 30, -8.451794668009e-01, 6.862066851847e-04, 9.4434e-02, 1.5092e-03, + 2DIAGNOSTIC, 31, -8.468416096647e-01, 6.286786617775e-04, 9.5930e-02, 1.4961e-03, + 2DIAGNOSTIC, 32, -8.480548111048e-01, 5.397655116353e-04, 9.7373e-02, 1.4431e-03, + 2DIAGNOSTIC, 33, -8.541467256093e-01, 5.152234087589e-04, 9.9334e-02, 1.9610e-03, + 2DIAGNOSTIC, 34, -8.550039012712e-01, 5.003300017424e-04, 1.0130e-01, 1.9622e-03, + 2DIAGNOSTIC, 35, -8.556839513272e-01, 4.695552254062e-04, 1.0279e-01, 1.4889e-03, + 2DIAGNOSTIC, 36, -8.565614104978e-01, 4.129360172811e-04, 1.0428e-01, 1.4911e-03, + 2DIAGNOSTIC, 37, -8.587024462728e-01, 3.620718177994e-04, 1.0645e-01, 2.1749e-03, + 2DIAGNOSTIC, 38, -8.591997664632e-01, 3.410371350552e-04, 1.0794e-01, 1.4889e-03, + 2DIAGNOSTIC, 39, -8.595420165883e-01, 3.043996827451e-04, 1.0944e-01, 1.4992e-03, + 2DIAGNOSTIC, 40, -8.600843908710e-01, 2.511915338553e-04, 1.1138e-01, 1.9360e-03, + 2DIAGNOSTIC, 41, -8.610519832235e-01, 1.994116188778e-04, 1.1699e-01, 5.6129e-03, + 2DIAGNOSTIC, 42, -8.610519289891e-01, 1.396047615283e-04, 1.1852e-01, 1.5359e-03, + 2DIAGNOSTIC, 43, -8.610520747055e-01, 1.187311125038e-04, 1.2002e-01, 1.4908e-03, + 2DIAGNOSTIC, 44, -8.610523210566e-01, 9.461177197605e-05, 1.2145e-01, 1.4348e-03, + 2DIAGNOSTIC, 45, -8.610527374132e-01, 6.785531086001e-05, 1.2295e-01, 1.4980e-03, + 2DIAGNOSTIC, 46, -8.610534408394e-01, 4.200383582728e-05, 1.2472e-01, 1.7681e-03, + 2DIAGNOSTIC, 47, -8.610546285340e-01, 2.909272986312e-05, 1.2619e-01, 1.4751e-03, + 2DIAGNOSTIC, 48, -8.610566318056e-01, 1.771500148760e-05, 1.2772e-01, 1.5271e-03, + 2DIAGNOSTIC, 49, -8.610600047698e-01, 7.601934162844e-06, 1.2922e-01, 1.5051e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.790184066918e-01, 1.797693134862e+308, 1.7512e-01, 4.5894e-02, + 2DIAGNOSTIC, 2, -4.793100654670e-01, 1.797693134862e+308, 1.7781e-01, 2.6951e-03, + 2DIAGNOSTIC, 3, -4.807364832701e-01, 1.797693134862e+308, 1.8046e-01, 2.6510e-03, + 2DIAGNOSTIC, 4, -4.825053434803e-01, 1.797693134862e+308, 1.8302e-01, 2.5530e-03, + 2DIAGNOSTIC, 5, -4.836719732314e-01, 1.797693134862e+308, 1.8524e-01, 2.2261e-03, + 2DIAGNOSTIC, 6, -4.862534453354e-01, 1.797693134862e+308, 1.8741e-01, 2.1660e-03, + 2DIAGNOSTIC, 7, -4.903423634492e-01, 1.797693134862e+308, 1.8949e-01, 2.0778e-03, + 2DIAGNOSTIC, 8, -5.073931799043e-01, 1.797693134862e+308, 1.9195e-01, 2.4672e-03, + 2DIAGNOSTIC, 9, -5.404877255314e-01, 1.797693134862e+308, 1.9436e-01, 2.4090e-03, + 2DIAGNOSTIC, 10, -5.776190340356e-01, 9.927051855795e-03, 1.9719e-01, 2.8319e-03, + 2DIAGNOSTIC, 11, -5.788449149004e-01, 1.204203710635e-02, 1.9942e-01, 2.2271e-03, + 2DIAGNOSTIC, 12, -5.801100967058e-01, 1.279924022562e-02, 2.0256e-01, 3.1362e-03, + 2DIAGNOSTIC, 13, -5.811900467044e-01, 1.239258874633e-02, 2.0478e-01, 2.2249e-03, + 2DIAGNOSTIC, 14, -5.818554098819e-01, 1.100113582596e-02, 2.0707e-01, 2.2891e-03, + 2DIAGNOSTIC, 15, -5.837146580912e-01, 8.906758437761e-03, 2.0936e-01, 2.2871e-03, + 2DIAGNOSTIC, 16, -6.037921190339e-01, 7.044805670521e-03, 2.1201e-01, 2.6560e-03, + 2DIAGNOSTIC, 17, -6.140000192907e-01, 5.224033478318e-03, 2.1459e-01, 2.5799e-03, + 2DIAGNOSTIC, 18, -6.330541122157e-01, 4.183546417719e-03, 2.1806e-01, 3.4640e-03, + 2DIAGNOSTIC, 19, -6.347239363272e-01, 3.804015468426e-03, 2.2059e-01, 2.5320e-03, + 2DIAGNOSTIC, 20, -6.349419576259e-01, 4.085738817352e-03, 2.2442e-01, 3.8249e-03, + 2DIAGNOSTIC, 21, -6.349277078085e-01, 3.986832384102e-03, 2.2701e-01, 2.5940e-03, + 2DIAGNOSTIC, 22, -6.350935000294e-01, 3.554943832269e-03, 2.2927e-01, 2.2571e-03, + 2DIAGNOSTIC, 23, -6.351225480698e-01, 2.858497885269e-03, 2.3180e-01, 2.5361e-03, + 2DIAGNOSTIC, 24, -6.351422566555e-01, 1.980541735425e-03, 2.3400e-01, 2.2020e-03, + 2DIAGNOSTIC, 25, -6.351124222941e-01, 1.029753162461e-03, 2.3622e-01, 2.2199e-03, + 2DIAGNOSTIC, 26, -6.351555610185e-01, 4.485994130781e-04, 2.3844e-01, 2.2159e-03, + 2DIAGNOSTIC, 27, -6.352655359785e-01, 5.295509205959e-05, 2.4062e-01, 2.1820e-03, + 2DIAGNOSTIC, 28, -6.355206362952e-01, 2.332488114883e-05, 2.4285e-01, 2.2302e-03, + 2DIAGNOSTIC, 29, -6.360051355953e-01, 3.025996168742e-05, 2.4539e-01, 2.5342e-03, + 2DIAGNOSTIC, 30, -6.366463850219e-01, 4.789793558873e-05, 2.4793e-01, 2.5399e-03, + 2DIAGNOSTIC, 31, -6.375212035501e-01, 7.323337579993e-05, 2.5017e-01, 2.2421e-03, + 2DIAGNOSTIC, 32, -6.388460634857e-01, 1.125125697815e-04, 2.5241e-01, 2.2461e-03, + 2DIAGNOSTIC, 33, -6.402184904003e-01, 1.589278814427e-04, 2.5553e-01, 3.1171e-03, + 2DIAGNOSTIC, 34, -6.416857033495e-01, 2.083410013568e-04, 2.5805e-01, 2.5151e-03, + 2DIAGNOSTIC, 35, -6.426295363915e-01, 2.474184749725e-04, 2.6029e-01, 2.2461e-03, + 2DIAGNOSTIC, 36, -6.539600389294e-01, 4.127651108256e-04, 2.6282e-01, 2.5260e-03, + 2DIAGNOSTIC, 37, -6.573149594441e-01, 5.700118109771e-04, 2.6503e-01, 2.2130e-03, + 2DIAGNOSTIC, 38, -6.593975238030e-01, 6.938238736046e-04, 2.6762e-01, 2.5921e-03, + 2DIAGNOSTIC, 39, -6.645549928433e-01, 8.154149145020e-04, 2.7220e-01, 4.5750e-03, + 2DIAGNOSTIC, 40, -6.645818578342e-01, 8.593226930900e-04, 2.7443e-01, 2.2290e-03, + 2DIAGNOSTIC, 41, -6.648666189730e-01, 8.313032213391e-04, 2.7705e-01, 2.6240e-03, + 2DIAGNOSTIC, 42, -6.651457062009e-01, 7.433233945330e-04, 2.7957e-01, 2.5170e-03, + 2DIAGNOSTIC, 43, -6.652068335701e-01, 6.057543423868e-04, 2.8184e-01, 2.2709e-03, + 2DIAGNOSTIC, 44, -6.653988859240e-01, 4.359589522093e-04, 2.8471e-01, 2.8682e-03, + 2DIAGNOSTIC, 45, -6.654258397941e-01, 2.402428676862e-04, 2.8729e-01, 2.5802e-03, + 2DIAGNOSTIC, 46, -6.650493944661e-01, 1.427724567759e-04, 2.8952e-01, 2.2280e-03, + 2DIAGNOSTIC, 47, -6.650119972218e-01, 6.941909584145e-05, 2.9178e-01, 2.2612e-03, + 2DIAGNOSTIC, 48, -6.651141418116e-01, 1.265074838834e-05, 2.9405e-01, 2.2678e-03, + 2DIAGNOSTIC, 49, -6.651536943313e-01, 6.655332361074e-06, 2.9658e-01, 2.5361e-03, + 2DIAGNOSTIC, 50, -6.652048387535e-01, 1.040069249732e-06, 2.9915e-01, 2.5651e-03, + 2DIAGNOSTIC, 51, -6.657379381025e-01, 3.106346124000e-06, 3.0141e-01, 2.2590e-03, + 2DIAGNOSTIC, 52, -6.660268471952e-01, 9.817684343796e-06, 3.0515e-01, 3.7479e-03, + 2DIAGNOSTIC, 53, -6.660658862080e-01, 1.612933535124e-05, 3.0739e-01, 2.2402e-03, + 2DIAGNOSTIC, 54, -6.660178811001e-01, 2.197041137701e-05, 3.0968e-01, 2.2840e-03, + 2DIAGNOSTIC, 55, -6.660388563604e-01, 2.606875988408e-05, 3.1198e-01, 2.2972e-03, + 2DIAGNOSTIC, 56, -6.660676241794e-01, 2.464235348891e-05, 3.1423e-01, 2.2590e-03, + 2DIAGNOSTIC, 57, -6.661424822352e-01, 2.118568993626e-05, 3.1648e-01, 2.2449e-03, + 2DIAGNOSTIC, 58, -6.661950063896e-01, 1.714782050803e-05, 3.1994e-01, 3.4640e-03, + 2DIAGNOSTIC, 59, -6.662164407862e-01, 1.222040166166e-05, 3.2257e-01, 2.6269e-03, + 2DIAGNOSTIC, 60, -6.662365300491e-01, 6.817456381782e-06, 3.2487e-01, 2.3038e-03, + 2DIAGNOSTIC, 61, -6.661188933557e-01, 4.055738359304e-06, 3.2771e-01, 2.8329e-03, + 2DIAGNOSTIC, 62, -6.668362986539e-01, 8.483032129317e-06, 3.3025e-01, 2.5480e-03, + 2DIAGNOSTIC, 63, -6.670310081904e-01, 1.354107284243e-05, 3.3315e-01, 2.8999e-03, + 2DIAGNOSTIC, 64, -6.669427671720e-01, 1.621891049198e-05, 3.3574e-01, 2.5880e-03, + 2DIAGNOSTIC, 65, -6.670392057413e-01, 1.824548325206e-05, 3.3802e-01, 2.2800e-03, + 2DIAGNOSTIC, 66, -6.669831854959e-01, 1.829508729907e-05, 3.4026e-01, 2.2399e-03, + 2DIAGNOSTIC, 67, -6.669377545086e-01, 1.675008325490e-05, 3.4280e-01, 2.5339e-03, + 2DIAGNOSTIC, 68, -6.670348127837e-01, 1.465062464572e-05, 3.4534e-01, 2.5389e-03, + 2DIAGNOSTIC, 69, -6.670783107287e-01, 1.171881658577e-05, 3.4789e-01, 2.5580e-03, + 2DIAGNOSTIC, 70, -6.670637046590e-01, 7.916336141892e-06, 3.5104e-01, 3.1440e-03, + 2DIAGNOSTIC, 71, -6.670734406015e-01, 2.718458119885e-06, 3.5353e-01, 2.4941e-03, + 2DIAGNOSTIC, 72, -6.671092321974e-01, 2.167030098726e-06, 3.5574e-01, 2.2111e-03, + 2DIAGNOSTIC, 73, -6.670580439258e-01, 2.357296374838e-06, 3.5831e-01, 2.5680e-03, + 2DIAGNOSTIC, 74, -6.670592494065e-01, 1.808527369697e-06, 3.6575e-01, 7.4389e-03, + 2DIAGNOSTIC, 75, -6.670592494041e-01, 1.741247021757e-06, 3.7300e-01, 7.2491e-03, + 2DIAGNOSTIC, 76, -6.670592494041e-01, 1.231245589668e-06, 3.7567e-01, 2.6751e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.950674042247e-01, 1.797693134862e+308, 4.4607e-01, 7.0395e-02, + 2DIAGNOSTIC, 2, -4.954764239216e-01, 1.797693134862e+308, 4.5784e-01, 1.1769e-02, + 2DIAGNOSTIC, 3, -4.962026570693e-01, 1.797693134862e+308, 4.7060e-01, 1.2766e-02, + 2DIAGNOSTIC, 4, -4.970692432060e-01, 1.797693134862e+308, 4.8296e-01, 1.2354e-02, + 2DIAGNOSTIC, 5, -4.980268534313e-01, 1.797693134862e+308, 4.9502e-01, 1.2065e-02, + 2DIAGNOSTIC, 6, -5.008695655786e-01, 1.797693134862e+308, 5.0679e-01, 1.1767e-02, + 2DIAGNOSTIC, 7, -5.023584327355e-01, 1.797693134862e+308, 5.2185e-01, 1.5061e-02, + 2DIAGNOSTIC, 8, -5.026011262739e-01, 1.797693134862e+308, 5.4020e-01, 1.8347e-02, + 2DIAGNOSTIC, 9, -5.026227788304e-01, 1.797693134862e+308, 5.5173e-01, 1.1537e-02, + 2DIAGNOSTIC, 10, -5.027394587837e-01, 1.218258569557e-03, 5.6373e-01, 1.2000e-02, + 2DIAGNOSTIC, 11, -5.028067345271e-01, 1.002083785663e-03, 5.7534e-01, 1.1604e-02, + 2DIAGNOSTIC, 12, -5.029339744567e-01, 7.564983963786e-04, 5.8746e-01, 1.2121e-02, + 2DIAGNOSTIC, 13, -5.031142998406e-01, 5.214658425443e-04, 5.9995e-01, 1.2490e-02, + 2DIAGNOSTIC, 14, -5.032547178665e-01, 3.150135348442e-04, 6.1652e-01, 1.6574e-02, + 2DIAGNOSTIC, 15, -5.034179448828e-01, 1.477847065967e-04, 6.3026e-01, 1.3733e-02, + 2DIAGNOSTIC, 16, -5.034911148944e-01, 9.018119709116e-05, 6.4264e-01, 1.2382e-02, + 2DIAGNOSTIC, 17, -5.035746593753e-01, 8.356224562915e-05, 6.5378e-01, 1.1138e-02, + 2DIAGNOSTIC, 18, -5.036676610323e-01, 8.068426840221e-05, 6.6545e-01, 1.1669e-02, + 2DIAGNOSTIC, 19, -5.039214653512e-01, 7.888229274726e-05, 6.8098e-01, 1.5530e-02, + 2DIAGNOSTIC, 20, -5.041540430028e-01, 7.982287994561e-05, 6.9743e-01, 1.6455e-02, + 2DIAGNOSTIC, 21, -5.041596755639e-01, 7.526323271108e-05, 7.1111e-01, 1.3681e-02, + 2DIAGNOSTIC, 22, -5.041554081246e-01, 6.750488485863e-05, 7.2340e-01, 1.2285e-02, + 2DIAGNOSTIC, 23, -5.041526477276e-01, 5.862582552429e-05, 7.3451e-01, 1.1110e-02, + 2DIAGNOSTIC, 24, -5.041395976019e-01, 4.794693587046e-05, 7.4676e-01, 1.2255e-02, + 2DIAGNOSTIC, 25, -5.041437944686e-01, 3.744653354767e-05, 7.6012e-01, 1.3356e-02, + 2DIAGNOSTIC, 26, -5.041299154816e-01, 2.568180439285e-05, 7.7211e-01, 1.1995e-02, + 2DIAGNOSTIC, 27, -5.041342838333e-01, 1.442620588250e-05, 7.8336e-01, 1.1251e-02, + 2DIAGNOSTIC, 28, -5.041372024221e-01, 4.576804227802e-06, 7.9383e-01, 1.0465e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.213462366487e-01, 1.797693134862e+308, 9.9810e-01, 2.0427e-01, + Elapsed time (stage 0): 1.0253e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.733850163530e-01, 1.797693134862e+308, 3.5543e-02, 3.5543e-02, + 2DIAGNOSTIC, 2, -9.747175923945e-01, 1.797693134862e+308, 3.6823e-02, 1.2801e-03, + 2DIAGNOSTIC, 3, -9.762845249903e-01, 1.797693134862e+308, 3.8089e-02, 1.2660e-03, + 2DIAGNOSTIC, 4, -9.784722412058e-01, 1.797693134862e+308, 3.9371e-02, 1.2820e-03, + 2DIAGNOSTIC, 5, -9.819517928078e-01, 1.797693134862e+308, 4.0623e-02, 1.2519e-03, + 2DIAGNOSTIC, 6, -1.003383450025e+00, 1.797693134862e+308, 4.2121e-02, 1.4980e-03, + 2DIAGNOSTIC, 7, -1.035709993109e+00, 1.797693134862e+308, 4.4000e-02, 1.8790e-03, + 2DIAGNOSTIC, 8, -1.043954608387e+00, 1.797693134862e+308, 4.5290e-02, 1.2898e-03, + 2DIAGNOSTIC, 9, -1.051325495261e+00, 1.797693134862e+308, 4.6787e-02, 1.4970e-03, + 2DIAGNOSTIC, 10, -1.058839006915e+00, 6.493704406789e-03, 4.8524e-02, 1.7371e-03, + 2DIAGNOSTIC, 11, -1.062590283167e+00, 6.264136744555e-03, 5.0016e-02, 1.4920e-03, + 2DIAGNOSTIC, 12, -1.062367602971e+00, 5.529392609958e-03, 5.1499e-02, 1.4832e-03, + 2DIAGNOSTIC, 13, -1.064610626457e+00, 4.500497788436e-03, 5.3224e-02, 1.7250e-03, + 2DIAGNOSTIC, 14, -1.062348424208e+00, 3.226052777982e-03, 5.5476e-02, 2.2519e-03, + 2DIAGNOSTIC, 15, -1.062492394677e+00, 1.897697925960e-03, 5.7234e-02, 1.7579e-03, + 2DIAGNOSTIC, 16, -1.060764420287e+00, 8.941713907517e-04, 5.8728e-02, 1.4939e-03, + 2DIAGNOSTIC, 17, -1.062717302085e+00, 4.859675848845e-04, 6.0489e-02, 1.7610e-03, + 2DIAGNOSTIC, 18, -1.064054057607e+00, 2.238969553115e-04, 6.2908e-02, 2.4190e-03, + 2DIAGNOSTIC, 19, -1.063061684722e+00, 5.924564965293e-05, 6.5381e-02, 2.4731e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.922478810457e-01, 1.797693134862e+308, 1.0817e-01, 4.2785e-02, + 2DIAGNOSTIC, 2, -6.926204450122e-01, 1.797693134862e+308, 1.1124e-01, 3.0780e-03, + 2DIAGNOSTIC, 3, -6.951105690799e-01, 1.797693134862e+308, 1.1460e-01, 3.3550e-03, + 2DIAGNOSTIC, 4, -6.985516517538e-01, 1.797693134862e+308, 1.1774e-01, 3.1390e-03, + 2DIAGNOSTIC, 5, -7.030581871003e-01, 1.797693134862e+308, 1.2057e-01, 2.8360e-03, + 2DIAGNOSTIC, 6, -7.091715260573e-01, 1.797693134862e+308, 1.2299e-01, 2.4121e-03, + 2DIAGNOSTIC, 7, -7.180924323806e-01, 1.797693134862e+308, 1.2565e-01, 2.6660e-03, + 2DIAGNOSTIC, 8, -7.277014760164e-01, 1.797693134862e+308, 1.2830e-01, 2.6450e-03, + 2DIAGNOSTIC, 9, -7.287718476151e-01, 1.797693134862e+308, 1.3072e-01, 2.4250e-03, + 2DIAGNOSTIC, 10, -7.312673472879e-01, 4.152931855875e-03, 1.3500e-01, 4.2820e-03, + 2DIAGNOSTIC, 11, -7.315999769520e-01, 3.806410078671e-03, 1.3825e-01, 3.2439e-03, + 2DIAGNOSTIC, 12, -7.330074594234e-01, 3.233201976168e-03, 1.4128e-01, 3.0360e-03, + 2DIAGNOSTIC, 13, -7.347033768567e-01, 2.582595998754e-03, 1.4432e-01, 3.0360e-03, + 2DIAGNOSTIC, 14, -7.357151324176e-01, 1.919392869707e-03, 1.4774e-01, 3.4230e-03, + 2DIAGNOSTIC, 15, -7.358468353940e-01, 1.296008137968e-03, 1.5084e-01, 3.0940e-03, + 2DIAGNOSTIC, 16, -7.357349900314e-01, 7.795635527161e-04, 1.5356e-01, 2.7280e-03, + 2DIAGNOSTIC, 17, -7.357159074207e-01, 4.550560513365e-04, 1.5597e-01, 2.4090e-03, + 2DIAGNOSTIC, 18, -7.357307542055e-01, 3.356602940684e-04, 1.5850e-01, 2.5258e-03, + 2DIAGNOSTIC, 19, -7.358625147989e-01, 2.216200992110e-04, 1.6160e-01, 3.1021e-03, + 2DIAGNOSTIC, 20, -7.358660519695e-01, 1.484507836627e-04, 1.6469e-01, 3.0930e-03, + 2DIAGNOSTIC, 21, -7.358288395295e-01, 7.423439280398e-05, 1.6721e-01, 2.5139e-03, + 2DIAGNOSTIC, 22, -7.357323674292e-01, 2.296361814945e-05, 1.6971e-01, 2.5041e-03, + 2DIAGNOSTIC, 23, -7.357998709013e-01, 3.837497024484e-06, 1.7221e-01, 2.4939e-03, + 2DIAGNOSTIC, 24, -7.358420299253e-01, 3.140242035904e-06, 1.7488e-01, 2.6729e-03, + 2DIAGNOSTIC, 25, -7.359311872203e-01, 5.807437586332e-06, 1.7758e-01, 2.7039e-03, + 2DIAGNOSTIC, 26, -7.359157193633e-01, 5.967487490523e-06, 1.7997e-01, 2.3901e-03, + 2DIAGNOSTIC, 27, -7.359333797711e-01, 5.721510926350e-06, 1.8294e-01, 2.9690e-03, + 2DIAGNOSTIC, 28, -7.359716453569e-01, 5.745785999448e-06, 1.8571e-01, 2.7690e-03, + 2DIAGNOSTIC, 29, -7.359271382816e-01, 6.450198362595e-06, 1.8799e-01, 2.2769e-03, + 2DIAGNOSTIC, 30, -7.358992985647e-01, 6.304249656051e-06, 1.9054e-01, 2.5480e-03, + 2DIAGNOSTIC, 31, -7.359496577105e-01, 5.901800894673e-06, 1.9283e-01, 2.2938e-03, + 2DIAGNOSTIC, 32, -7.359676512387e-01, 4.071015651246e-06, 1.9549e-01, 2.6550e-03, + 2DIAGNOSTIC, 33, -7.360551492136e-01, 3.881004370786e-06, 1.9787e-01, 2.3851e-03, + 2DIAGNOSTIC, 34, -7.360719027603e-01, 4.066166441594e-06, 2.0060e-01, 2.7249e-03, + 2DIAGNOSTIC, 35, -7.361777117250e-01, 6.147374671160e-06, 2.0300e-01, 2.4009e-03, + 2DIAGNOSTIC, 36, -7.361584304721e-01, 7.205705309724e-06, 2.0540e-01, 2.4030e-03, + 2DIAGNOSTIC, 37, -7.368761541848e-01, 1.534935541170e-05, 2.0821e-01, 2.8100e-03, + 2DIAGNOSTIC, 38, -7.373673038387e-01, 2.691942581014e-05, 2.1051e-01, 2.3000e-03, + 2DIAGNOSTIC, 39, -7.379002853935e-01, 4.023662344007e-05, 2.1338e-01, 2.8710e-03, + 2DIAGNOSTIC, 40, -7.386891618023e-01, 5.654301569564e-05, 2.1624e-01, 2.8620e-03, + 2DIAGNOSTIC, 41, -7.390716197245e-01, 7.074211747404e-05, 2.1856e-01, 2.3181e-03, + 2DIAGNOSTIC, 42, -7.398633503664e-01, 8.501749345209e-05, 2.2085e-01, 2.2860e-03, + 2DIAGNOSTIC, 43, -7.402948949704e-01, 9.511093491755e-05, 2.2441e-01, 3.5629e-03, + 2DIAGNOSTIC, 44, -7.404661261669e-01, 9.736696071181e-05, 2.2686e-01, 2.4540e-03, + 2DIAGNOSTIC, 45, -7.406217417453e-01, 9.265992758573e-05, 2.2925e-01, 2.3901e-03, + 2DIAGNOSTIC, 46, -7.407322342893e-01, 8.001988856960e-05, 2.3165e-01, 2.3949e-03, + 2DIAGNOSTIC, 47, -7.407447909080e-01, 6.629488557649e-05, 2.3406e-01, 2.4071e-03, + 2DIAGNOSTIC, 48, -7.408597022334e-01, 5.171893152935e-05, 2.3650e-01, 2.4450e-03, + 2DIAGNOSTIC, 49, -7.409714210866e-01, 3.787710405023e-05, 2.3918e-01, 2.6779e-03, + 2DIAGNOSTIC, 50, -7.412645447543e-01, 2.943876867588e-05, 2.4188e-01, 2.7001e-03, + 2DIAGNOSTIC, 51, -7.414671267334e-01, 2.286006950016e-05, 2.4459e-01, 2.7120e-03, + 2DIAGNOSTIC, 52, -7.412516654915e-01, 1.863992815847e-05, 2.4798e-01, 3.3889e-03, + 2DIAGNOSTIC, 53, -7.409290561016e-01, 1.372152234503e-05, 2.5070e-01, 2.7251e-03, + 2DIAGNOSTIC, 54, -7.408603355009e-01, 8.491345036044e-06, 2.5316e-01, 2.4600e-03, + 2DIAGNOSTIC, 55, -7.408514017277e-01, 3.640767837869e-06, 2.5574e-01, 2.5761e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.627882083170e-01, 1.797693134862e+308, 3.2077e-01, 6.5032e-02, + 2DIAGNOSTIC, 2, -5.630494049334e-01, 1.797693134862e+308, 3.3505e-01, 1.4275e-02, + 2DIAGNOSTIC, 3, -5.634828358079e-01, 1.797693134862e+308, 3.4777e-01, 1.2724e-02, + 2DIAGNOSTIC, 4, -5.641396381037e-01, 1.797693134862e+308, 3.5945e-01, 1.1683e-02, + 2DIAGNOSTIC, 5, -5.647435581269e-01, 1.797693134862e+308, 3.7234e-01, 1.2881e-02, + 2DIAGNOSTIC, 6, -5.663855702656e-01, 1.797693134862e+308, 3.8369e-01, 1.1355e-02, + 2DIAGNOSTIC, 7, -5.689914397032e-01, 1.797693134862e+308, 3.9518e-01, 1.1491e-02, + 2DIAGNOSTIC, 8, -5.705590910742e-01, 1.797693134862e+308, 4.0731e-01, 1.2131e-02, + 2DIAGNOSTIC, 9, -5.729788661595e-01, 1.797693134862e+308, 4.2382e-01, 1.6508e-02, + 2DIAGNOSTIC, 10, -5.738150982130e-01, 1.366654847000e-03, 4.3596e-01, 1.2135e-02, + 2DIAGNOSTIC, 11, -5.741542285950e-01, 1.344645197202e-03, 4.5004e-01, 1.4087e-02, + 2DIAGNOSTIC, 12, -5.743821757389e-01, 1.226042402551e-03, 4.6628e-01, 1.6241e-02, + 2DIAGNOSTIC, 13, -5.745234148238e-01, 1.036840632587e-03, 4.7930e-01, 1.3020e-02, + 2DIAGNOSTIC, 14, -5.746666151866e-01, 8.095350698444e-04, 4.9174e-01, 1.2439e-02, + 2DIAGNOSTIC, 15, -5.749260974309e-01, 5.674236721400e-04, 5.0864e-01, 1.6898e-02, + 2DIAGNOSTIC, 16, -5.750338724079e-01, 3.576506033697e-04, 5.2046e-01, 1.1820e-02, + 2DIAGNOSTIC, 17, -5.750895220705e-01, 2.179149265122e-04, 5.3309e-01, 1.2627e-02, + 2DIAGNOSTIC, 18, -5.751435886783e-01, 1.172826906473e-04, 5.5078e-01, 1.7697e-02, + 2DIAGNOSTIC, 19, -5.751692779232e-01, 8.021582213442e-05, 5.6345e-01, 1.2670e-02, + 2DIAGNOSTIC, 20, -5.751714006197e-01, 6.022597389432e-05, 5.7585e-01, 1.2396e-02, + 2DIAGNOSTIC, 21, -5.752072312236e-01, 4.547502909005e-05, 5.8836e-01, 1.2514e-02, + 2DIAGNOSTIC, 22, -5.752356958917e-01, 3.376456866409e-05, 6.0325e-01, 1.4891e-02, + 2DIAGNOSTIC, 23, -5.753010494619e-01, 2.450667843989e-05, 6.1757e-01, 1.4312e-02, + 2DIAGNOSTIC, 24, -5.753306125888e-01, 1.729638798682e-05, 6.3066e-01, 1.3096e-02, + 2DIAGNOSTIC, 25, -5.753402878341e-01, 1.449117503988e-05, 6.4452e-01, 1.3853e-02, + 2DIAGNOSTIC, 26, -5.753485985097e-01, 1.287745953111e-05, 6.5906e-01, 1.4543e-02, + 2DIAGNOSTIC, 27, -5.753459028909e-01, 1.123011394318e-05, 6.7072e-01, 1.1663e-02, + 2DIAGNOSTIC, 28, -5.753464138321e-01, 9.702213002026e-06, 6.8366e-01, 1.2935e-02, + 2DIAGNOSTIC, 29, -5.753419001057e-01, 7.837049188095e-06, 6.9837e-01, 1.4715e-02, + 2DIAGNOSTIC, 30, -5.753424198818e-01, 5.506716109910e-06, 7.1259e-01, 1.4215e-02, + 2DIAGNOSTIC, 31, -5.753409795734e-01, 3.461515980047e-06, 7.2607e-01, 1.3481e-02, + 2DIAGNOSTIC, 32, -5.753393885353e-01, 1.710027765299e-06, 7.3951e-01, 1.3438e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.769184088591e-01, 1.797693134862e+308, 9.2201e-01, 1.8250e-01, + Elapsed time (stage 1): 9.4207e-01 + + +Total elapsed time: 1.9679e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:28:42 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 52 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 67 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 87.93% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 87.93% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[22606 3240 21351 8884 15078 2026 1036 1909 647 477 1470 197 + 2686 458 891 178 1087 0 572 0 395 642 0 754 + 260 773 0 166 0 207 0 216 234 0 0 175 + 0 0 0 0 0 0 0 0 0 0 0 0 + 0 190 0 0] +[112754 43236 38348 49848 40060 21985 17637 22589 18948 15721 + 17576 10825 11361 9621 12125 8234 7420 5914 8905 5019 + 5390 4376 7010 5090 3160 2288 2071 2283 1501 1952 + 2281 1059 1184 2007 1719 1690 1219 1516 850 841 + 1363 989 1553 1521 517 632 954 1455 863 1266 + 595 820] +[ 1708 0 0 6622 0 18660 5748 6942 374 163 4999 0 + 0 913 425 0 176 167 948 8572 9810 0 0 7472 + 688 0 459 206 954 0 21343 0 0 0 0 0 + 217 188 9705 210 0 189 0 0 449 0 0 0 + 0 0 0 170] +[ 11259 2132 760 10838 573 5745 56330 228 18020 6643 + 6608 1263 1020 8514 10141 5216 9637 7521 15136 752 + 1788 1203 992 642 2669 1487 3541 710 366 4674 + 143632 490 3849 1141 1278 3561 938 6145 846 5036 + 545 3586 876 10353 1235 1316 1786 4892 4787 3170 + 4315 4470] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:39:32 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:39:34 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:25 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:25 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:25 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:35 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:38 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC004 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:52 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:44:18 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:46:09 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:46:11 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:47:32 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:47:33 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55e773c2ad20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.0155, 122.597, -125.791] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e773aa1730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9097013010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55e773c2e020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.803, 68.5715, -107.025] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e773c340c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9093954010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55e773c44840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.0155, 122.597, -125.791] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e773c30890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f908ec80010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55e773c483e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.803, 68.5715, -107.025] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e773c37130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f908b5c1010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.418059489437e-01, 1.797693134862e+308, 2.4532e-01, 2.4532e-01, + 2DIAGNOSTIC, 2, -4.440187991706e-01, 1.797693134862e+308, 2.4678e-01, 1.4520e-03, + 2DIAGNOSTIC, 3, -4.471408800478e-01, 1.797693134862e+308, 2.4814e-01, 1.3640e-03, + 2DIAGNOSTIC, 4, -4.484784588729e-01, 1.797693134862e+308, 2.4951e-01, 1.3700e-03, + 2DIAGNOSTIC, 5, -4.519955600685e-01, 1.797693134862e+308, 2.5090e-01, 1.3890e-03, + 2DIAGNOSTIC, 6, -4.611474319561e-01, 1.797693134862e+308, 2.5225e-01, 1.3509e-03, + 2DIAGNOSTIC, 7, -4.709424171490e-01, 1.797693134862e+308, 2.5366e-01, 1.4141e-03, + 2DIAGNOSTIC, 8, -4.976428646973e-01, 1.797693134862e+308, 2.5513e-01, 1.4641e-03, + 2DIAGNOSTIC, 9, -5.502673568922e-01, 1.797693134862e+308, 2.5682e-01, 1.6940e-03, + 2DIAGNOSTIC, 10, -5.621534469778e-01, 1.551348816176e-02, 2.5906e-01, 2.2418e-03, + 2DIAGNOSTIC, 11, -5.680398704241e-01, 1.696392952765e-02, 2.6083e-01, 1.7641e-03, + 2DIAGNOSTIC, 12, -5.771581903052e-01, 1.717909588046e-02, 2.6255e-01, 1.7171e-03, + 2DIAGNOSTIC, 13, -5.912724258043e-01, 1.652006413369e-02, 2.6541e-01, 2.8651e-03, + 2DIAGNOSTIC, 14, -5.939609452688e-01, 1.460268669858e-02, 2.6729e-01, 1.8811e-03, + 2DIAGNOSTIC, 15, -5.955710006993e-01, 1.185407796910e-02, 2.6892e-01, 1.6320e-03, + 2DIAGNOSTIC, 16, -6.070463073198e-01, 9.150002979033e-03, 2.7084e-01, 1.9119e-03, + 2DIAGNOSTIC, 17, -6.099034527851e-01, 6.367816430472e-03, 2.7251e-01, 1.6739e-03, + 2DIAGNOSTIC, 18, -6.172460750793e-01, 4.327236731802e-03, 2.7540e-01, 2.8882e-03, + 2DIAGNOSTIC, 19, -6.169041893024e-01, 3.595072208071e-03, 2.7707e-01, 1.6680e-03, + 2DIAGNOSTIC, 20, -6.173221008261e-01, 2.946261799580e-03, 2.7873e-01, 1.6689e-03, + 2DIAGNOSTIC, 21, -6.174227410060e-01, 2.240958528764e-03, 2.8070e-01, 1.9681e-03, + 2DIAGNOSTIC, 22, -6.174241583501e-01, 1.605251327827e-03, 2.8264e-01, 1.9400e-03, + 2DIAGNOSTIC, 23, -6.174345638954e-01, 1.200682101482e-03, 2.8431e-01, 1.6630e-03, + 2DIAGNOSTIC, 24, -6.174428596414e-01, 7.824206782340e-04, 2.8596e-01, 1.6551e-03, + 2DIAGNOSTIC, 25, -6.174556867979e-01, 3.580187402839e-04, 2.8815e-01, 2.1880e-03, + 2DIAGNOSTIC, 26, -6.174582804231e-01, 1.617546382285e-04, 2.8984e-01, 1.6952e-03, + 2DIAGNOSTIC, 27, -6.174757368266e-01, 1.671682026744e-05, 2.9234e-01, 2.4941e-03, + 2DIAGNOSTIC, 28, -6.174877346345e-01, 1.497792010077e-05, 2.9409e-01, 1.7531e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.608147529749e-01, 1.797693134862e+308, 5.3256e-01, 2.3847e-01, + 2DIAGNOSTIC, 2, -4.602379445227e-01, 1.797693134862e+308, 5.3490e-01, 2.3398e-03, + 2DIAGNOSTIC, 3, -4.619672712283e-01, 1.797693134862e+308, 5.3710e-01, 2.1970e-03, + 2DIAGNOSTIC, 4, -4.659135355344e-01, 1.797693134862e+308, 5.3929e-01, 2.1961e-03, + 2DIAGNOSTIC, 5, -4.664329437813e-01, 1.797693134862e+308, 5.4161e-01, 2.3222e-03, + 2DIAGNOSTIC, 6, -4.673806483190e-01, 1.797693134862e+308, 5.4378e-01, 2.1679e-03, + 2DIAGNOSTIC, 7, -4.731954444958e-01, 1.797693134862e+308, 5.4634e-01, 2.5549e-03, + 2DIAGNOSTIC, 8, -4.834426183460e-01, 1.797693134862e+308, 5.4908e-01, 2.7409e-03, + 2DIAGNOSTIC, 9, -4.858823244147e-01, 1.797693134862e+308, 5.5228e-01, 3.2048e-03, + 2DIAGNOSTIC, 10, -4.887955490509e-01, 4.164318982144e-03, 5.5618e-01, 3.8970e-03, + 2DIAGNOSTIC, 11, -4.892461449692e-01, 4.119519050427e-03, 5.5872e-01, 2.5449e-03, + 2DIAGNOSTIC, 12, -4.901493931758e-01, 3.726485408308e-03, 5.6093e-01, 2.2011e-03, + 2DIAGNOSTIC, 13, -4.960926628467e-01, 3.397433045259e-03, 5.6313e-01, 2.2089e-03, + 2DIAGNOSTIC, 14, -5.033192670651e-01, 3.274773484445e-03, 5.6537e-01, 2.2349e-03, + 2DIAGNOSTIC, 15, -5.136316841943e-01, 3.295800170439e-03, 5.6798e-01, 2.6052e-03, + 2DIAGNOSTIC, 16, -5.432152343510e-01, 4.116443282944e-03, 5.7057e-01, 2.5990e-03, + 2DIAGNOSTIC, 17, -5.296191280223e-01, 4.164183993698e-03, 5.7314e-01, 2.5630e-03, + 2DIAGNOSTIC, 18, -5.443839702681e-01, 4.647065456393e-03, 5.7560e-01, 2.4650e-03, + 2DIAGNOSTIC, 19, -5.478381788909e-01, 4.812269635820e-03, 5.7930e-01, 3.6981e-03, + 2DIAGNOSTIC, 20, -5.491535066125e-01, 4.624900166396e-03, 5.8173e-01, 2.4309e-03, + 2DIAGNOSTIC, 21, -5.488039768925e-01, 4.029447121938e-03, 5.8378e-01, 2.0449e-03, + 2DIAGNOSTIC, 22, -5.489851107330e-01, 3.152792299337e-03, 5.8585e-01, 2.0771e-03, + 2DIAGNOSTIC, 23, -5.491667369046e-01, 2.221126653171e-03, 5.8794e-01, 2.0871e-03, + 2DIAGNOSTIC, 24, -5.503268233588e-01, 1.356464528238e-03, 5.9096e-01, 3.0239e-03, + 2DIAGNOSTIC, 25, -5.520320840589e-01, 6.909622216133e-04, 5.9305e-01, 2.0878e-03, + 2DIAGNOSTIC, 26, -5.522337027652e-01, 6.693637942612e-04, 5.9522e-01, 2.1670e-03, + 2DIAGNOSTIC, 27, -5.540613492085e-01, 3.371160752000e-04, 5.9765e-01, 2.4359e-03, + 2DIAGNOSTIC, 28, -5.561467617031e-01, 3.307549438346e-04, 6.0111e-01, 3.4571e-03, + 2DIAGNOSTIC, 29, -5.564719523501e-01, 3.640688623769e-04, 6.0337e-01, 2.2631e-03, + 2DIAGNOSTIC, 30, -5.572125304770e-01, 3.990715630935e-04, 6.0595e-01, 2.5711e-03, + 2DIAGNOSTIC, 31, -5.581434827480e-01, 4.046534655718e-04, 6.0852e-01, 2.5749e-03, + 2DIAGNOSTIC, 32, -5.586315349815e-01, 3.829263547925e-04, 6.1080e-01, 2.2769e-03, + 2DIAGNOSTIC, 33, -5.586948460829e-01, 3.298293007161e-04, 6.1305e-01, 2.2521e-03, + 2DIAGNOSTIC, 34, -5.591805140474e-01, 2.751732284812e-04, 6.1567e-01, 2.6162e-03, + 2DIAGNOSTIC, 35, -5.593189541405e-01, 2.270333179397e-04, 6.1837e-01, 2.7070e-03, + 2DIAGNOSTIC, 36, -5.593840268780e-01, 1.637398979496e-04, 6.2152e-01, 3.1462e-03, + 2DIAGNOSTIC, 37, -5.594459419014e-01, 1.156756447850e-04, 6.2393e-01, 2.4090e-03, + 2DIAGNOSTIC, 38, -5.595530971810e-01, 9.084789786536e-05, 6.2830e-01, 4.3700e-03, + 2DIAGNOSTIC, 39, -5.595569887974e-01, 6.321554187613e-05, 6.3087e-01, 2.5671e-03, + 2DIAGNOSTIC, 40, -5.595844211928e-01, 4.119514122911e-05, 6.3307e-01, 2.2080e-03, + 2DIAGNOSTIC, 41, -5.595131860200e-01, 2.770399728468e-05, 6.3522e-01, 2.1479e-03, + 2DIAGNOSTIC, 42, -5.595566682218e-01, 1.923972053662e-05, 6.3738e-01, 2.1579e-03, + 2DIAGNOSTIC, 43, -5.595998403453e-01, 1.057918901634e-05, 6.3952e-01, 2.1441e-03, + 2DIAGNOSTIC, 44, -5.597604357542e-01, 9.234604126350e-06, 6.4170e-01, 2.1739e-03, + 2DIAGNOSTIC, 45, -5.598420244408e-01, 9.732519677497e-06, 6.4381e-01, 2.1122e-03, + 2DIAGNOSTIC, 46, -5.599858570557e-01, 1.179197335660e-05, 6.4618e-01, 2.3689e-03, + 2DIAGNOSTIC, 47, -5.601731832876e-01, 1.549716702469e-05, 6.4891e-01, 2.7299e-03, + 2DIAGNOSTIC, 48, -5.602756925969e-01, 1.990785185964e-05, 6.5136e-01, 2.4490e-03, + 2DIAGNOSTIC, 49, -5.602367560268e-01, 2.188182599407e-05, 6.5363e-01, 2.2702e-03, + 2DIAGNOSTIC, 50, -5.603527037975e-01, 2.333816056518e-05, 6.5635e-01, 2.7261e-03, + 2DIAGNOSTIC, 51, -5.603686766923e-01, 2.194704206660e-05, 6.5885e-01, 2.5010e-03, + 2DIAGNOSTIC, 52, -5.603802329719e-01, 1.911706933065e-05, 6.6136e-01, 2.5010e-03, + 2DIAGNOSTIC, 53, -5.607041078862e-01, 1.829302746822e-05, 6.6473e-01, 3.3751e-03, + 2DIAGNOSTIC, 54, -5.605025066658e-01, 1.533867886615e-05, 6.6780e-01, 3.0739e-03, + 2DIAGNOSTIC, 55, -5.605068239799e-01, 1.198882908447e-05, 6.6996e-01, 2.1570e-03, + 2DIAGNOSTIC, 56, -5.605698061017e-01, 9.604304102771e-06, 6.7214e-01, 2.1820e-03, + 2DIAGNOSTIC, 57, -5.604993612257e-01, 7.454480650031e-06, 6.7427e-01, 2.1231e-03, + 2DIAGNOSTIC, 58, -5.606689917384e-01, 7.215278190417e-06, 6.7671e-01, 2.4450e-03, + 2DIAGNOSTIC, 59, -5.607748942981e-01, 6.898091088569e-06, 6.7918e-01, 2.4688e-03, + 2DIAGNOSTIC, 60, -5.613803539032e-01, 1.237048340300e-05, 6.8163e-01, 2.4478e-03, + 2DIAGNOSTIC, 61, -5.614493540743e-01, 1.713602550471e-05, 6.8440e-01, 2.7750e-03, + 2DIAGNOSTIC, 62, -5.612253273025e-01, 1.829939535003e-05, 6.8656e-01, 2.1591e-03, + 2DIAGNOSTIC, 63, -5.619158314427e-01, 2.638782204144e-05, 6.8949e-01, 2.9299e-03, + 2DIAGNOSTIC, 64, -5.651827345685e-01, 5.675842902343e-05, 6.9166e-01, 2.1720e-03, + 2DIAGNOSTIC, 65, -5.678752638890e-01, 1.017847646862e-04, 6.9386e-01, 2.1932e-03, + 2DIAGNOSTIC, 66, -5.699404808118e-01, 1.524097188124e-04, 6.9664e-01, 2.7859e-03, + 2DIAGNOSTIC, 67, -5.706042036515e-01, 1.917356618071e-04, 6.9941e-01, 2.7640e-03, + 2DIAGNOSTIC, 68, -5.709541209251e-01, 2.156867831150e-04, 7.0155e-01, 2.1439e-03, + 2DIAGNOSTIC, 69, -5.711216830733e-01, 2.198293022674e-04, 7.0369e-01, 2.1360e-03, + 2DIAGNOSTIC, 70, -5.721156910283e-01, 2.143341638409e-04, 7.0615e-01, 2.4590e-03, + 2DIAGNOSTIC, 71, -5.724561898641e-01, 1.914163141370e-04, 7.0864e-01, 2.4951e-03, + 2DIAGNOSTIC, 72, -5.727357744421e-01, 1.515204823493e-04, 7.1174e-01, 3.0961e-03, + 2DIAGNOSTIC, 73, -5.733885099644e-01, 1.076721136375e-04, 7.1417e-01, 2.4362e-03, + 2DIAGNOSTIC, 74, -5.732118105593e-01, 7.616264293161e-05, 7.1631e-01, 2.1410e-03, + 2DIAGNOSTIC, 75, -5.731320754956e-01, 5.612122508079e-05, 7.1877e-01, 2.4590e-03, + 2DIAGNOSTIC, 76, -5.731637911110e-01, 4.559521561182e-05, 7.2166e-01, 2.8880e-03, + 2DIAGNOSTIC, 77, -5.729767797496e-01, 3.419837006811e-05, 7.2409e-01, 2.4259e-03, + 2DIAGNOSTIC, 78, -5.728926538561e-01, 2.166686229509e-05, 7.2642e-01, 2.3341e-03, + 2DIAGNOSTIC, 79, -5.730303995450e-01, 9.312360770728e-06, 7.2874e-01, 2.3141e-03, + 2DIAGNOSTIC, 80, -5.730840840263e-01, 3.234391547178e-06, 7.3143e-01, 2.6941e-03, + 2DIAGNOSTIC, 81, -5.734845539101e-01, 1.779889562632e-06, 7.3409e-01, 2.6560e-03, + 2DIAGNOSTIC, 82, -5.734398626704e-01, 1.547388407146e-06, 7.3671e-01, 2.6219e-03, + 2DIAGNOSTIC, 83, -5.734349558576e-01, 5.351885902628e-06, 7.4048e-01, 3.7730e-03, + 2DIAGNOSTIC, 84, -5.733327754166e-01, 6.879895266548e-06, 7.4355e-01, 3.0701e-03, + 2DIAGNOSTIC, 85, -5.733330585460e-01, 7.225849579302e-06, 7.4659e-01, 3.0420e-03, + 2DIAGNOSTIC, 86, -5.733331035376e-01, 7.085669908643e-06, 7.4912e-01, 2.5251e-03, + 2DIAGNOSTIC, 87, -5.733331168391e-01, 5.201628194661e-06, 7.5171e-01, 2.5902e-03, + 2DIAGNOSTIC, 88, -5.733331219601e-01, 2.423733076365e-06, 7.5421e-01, 2.5060e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.409694980938e-01, 1.797693134862e+308, 9.9584e-01, 2.4163e-01, + 2DIAGNOSTIC, 2, -4.411703774421e-01, 1.797693134862e+308, 1.0079e+00, 1.2040e-02, + 2DIAGNOSTIC, 3, -4.416656579826e-01, 1.797693134862e+308, 1.0199e+00, 1.1974e-02, + 2DIAGNOSTIC, 4, -4.420976919913e-01, 1.797693134862e+308, 1.0321e+00, 1.2268e-02, + 2DIAGNOSTIC, 5, -4.432660246579e-01, 1.797693134862e+308, 1.0463e+00, 1.4179e-02, + 2DIAGNOSTIC, 6, -4.443011908398e-01, 1.797693134862e+308, 1.0640e+00, 1.7708e-02, + 2DIAGNOSTIC, 7, -4.453537513064e-01, 1.797693134862e+308, 1.0788e+00, 1.4748e-02, + 2DIAGNOSTIC, 8, -4.458950950727e-01, 1.797693134862e+308, 1.0913e+00, 1.2504e-02, + 2DIAGNOSTIC, 9, -4.466913240513e-01, 1.797693134862e+308, 1.1056e+00, 1.4365e-02, + 2DIAGNOSTIC, 10, -4.475716303078e-01, 1.033090082254e-03, 1.1185e+00, 1.2886e-02, + 2DIAGNOSTIC, 11, -4.498098848008e-01, 1.074060844891e-03, 1.1334e+00, 1.4890e-02, + 2DIAGNOSTIC, 12, -4.516809606750e-01, 1.119211604830e-03, 1.1502e+00, 1.6811e-02, + 2DIAGNOSTIC, 13, -4.517858896330e-01, 1.085578206498e-03, 1.1640e+00, 1.3826e-02, + 2DIAGNOSTIC, 14, -4.529186815747e-01, 1.031089636328e-03, 1.1768e+00, 1.2765e-02, + 2DIAGNOSTIC, 15, -4.545560137662e-01, 1.007454541523e-03, 1.1916e+00, 1.4773e-02, + 2DIAGNOSTIC, 16, -4.581677205786e-01, 1.075203598241e-03, 1.2042e+00, 1.2656e-02, + 2DIAGNOSTIC, 17, -4.972422302669e-01, 2.516976395008e-03, 1.2212e+00, 1.6933e-02, + 2DIAGNOSTIC, 18, -5.353390468287e-01, 4.840090935047e-03, 1.2349e+00, 1.3707e-02, + 2DIAGNOSTIC, 19, -5.406302820115e-01, 6.610179576564e-03, 1.2490e+00, 1.4157e-02, + 2DIAGNOSTIC, 20, -5.456554161021e-01, 7.768277365761e-03, 1.2626e+00, 1.3540e-02, + 2DIAGNOSTIC, 21, -5.479762086547e-01, 8.218671217544e-03, 1.2800e+00, 1.7391e-02, + 2DIAGNOSTIC, 22, -5.492135307331e-01, 7.925287231596e-03, 1.2919e+00, 1.1923e-02, + 2DIAGNOSTIC, 23, -5.536044242357e-01, 7.021555268564e-03, 1.3060e+00, 1.4079e-02, + 2DIAGNOSTIC, 24, -5.562506626881e-01, 5.651335726629e-03, 1.3201e+00, 1.4170e-02, + 2DIAGNOSTIC, 25, -5.572354244707e-01, 3.962796577303e-03, 1.3323e+00, 1.2141e-02, + 2DIAGNOSTIC, 26, -5.578719637574e-01, 2.136331130642e-03, 1.3494e+00, 1.7082e-02, + 2DIAGNOSTIC, 27, -5.591595724575e-01, 1.115911284906e-03, 1.3632e+00, 1.3832e-02, + 2DIAGNOSTIC, 28, -5.597815183890e-01, 8.730749027100e-04, 1.3754e+00, 1.2250e-02, + 2DIAGNOSTIC, 29, -5.605496962094e-01, 6.848914865918e-04, 1.3909e+00, 1.5483e-02, + 2DIAGNOSTIC, 30, -5.615776823380e-01, 5.624290176629e-04, 1.4031e+00, 1.2211e-02, + 2DIAGNOSTIC, 31, -5.617485971820e-01, 4.425555047218e-04, 1.4180e+00, 1.4869e-02, + 2DIAGNOSTIC, 32, -5.619128867541e-01, 3.129106260776e-04, 1.4333e+00, 1.5261e-02, + 2DIAGNOSTIC, 33, -5.619516976000e-01, 2.378106638194e-04, 1.4453e+00, 1.2050e-02, + 2DIAGNOSTIC, 34, -5.625263477329e-01, 1.985699369170e-04, 1.4574e+00, 1.2106e-02, + 2DIAGNOSTIC, 35, -5.631694948264e-01, 1.689007236544e-04, 1.4695e+00, 1.2102e-02, + 2DIAGNOSTIC, 36, -5.652351283801e-01, 1.667474763032e-04, 1.4895e+00, 2.0005e-02, + 2DIAGNOSTIC, 37, -5.660234072472e-01, 1.798376345295e-04, 1.5023e+00, 1.2805e-02, + 2DIAGNOSTIC, 38, -5.666139441035e-01, 1.930175188623e-04, 1.5146e+00, 1.2279e-02, + 2DIAGNOSTIC, 39, -5.675118305113e-01, 2.108055232249e-04, 1.5286e+00, 1.3985e-02, + 2DIAGNOSTIC, 40, -5.681769147014e-01, 2.307285549907e-04, 1.5409e+00, 1.2322e-02, + 2DIAGNOSTIC, 41, -5.691614325003e-01, 2.428319112459e-04, 1.5586e+00, 1.7684e-02, + 2DIAGNOSTIC, 42, -5.725715852485e-01, 2.780241903719e-04, 1.5707e+00, 1.2129e-02, + 2DIAGNOSTIC, 43, -5.738880811223e-01, 3.014734272225e-04, 1.5831e+00, 1.2410e-02, + 2DIAGNOSTIC, 44, -5.748789232088e-01, 3.148316861657e-04, 1.5984e+00, 1.5232e-02, + 2DIAGNOSTIC, 45, -5.776029292153e-01, 3.383279762065e-04, 1.6182e+00, 1.9799e-02, + 2DIAGNOSTIC, 46, -5.806878895446e-01, 3.886710549840e-04, 1.6314e+00, 1.3227e-02, + 2DIAGNOSTIC, 47, -5.810497439633e-01, 4.117456069730e-04, 1.6487e+00, 1.7338e-02, + 2DIAGNOSTIC, 48, -5.812092484118e-01, 4.033210889847e-04, 1.6623e+00, 1.3545e-02, + 2DIAGNOSTIC, 49, -5.815211148704e-01, 3.709128420011e-04, 1.6772e+00, 1.4943e-02, + 2DIAGNOSTIC, 50, -5.817177102080e-01, 3.135518517722e-04, 1.6932e+00, 1.6024e-02, + 2DIAGNOSTIC, 51, -5.821765084109e-01, 2.426552792022e-04, 1.7073e+00, 1.4010e-02, + 2DIAGNOSTIC, 52, -5.825897604643e-01, 1.911696555766e-04, 1.7213e+00, 1.4061e-02, + 2DIAGNOSTIC, 53, -5.833467685622e-01, 1.450893052707e-04, 1.7356e+00, 1.4251e-02, + 2DIAGNOSTIC, 54, -5.839280745687e-01, 1.021711445133e-04, 1.7530e+00, 1.7458e-02, + 2DIAGNOSTIC, 55, -5.840144520964e-01, 7.775435194093e-05, 1.7662e+00, 1.3145e-02, + 2DIAGNOSTIC, 56, -5.840838724369e-01, 7.705892506646e-05, 1.7811e+00, 1.4943e-02, + 2DIAGNOSTIC, 57, -5.840836498289e-01, 7.243906507303e-05, 1.7984e+00, 1.7278e-02, + 2DIAGNOSTIC, 58, -5.840867577221e-01, 6.247227593024e-05, 1.8129e+00, 1.4523e-02, + 2DIAGNOSTIC, 59, -5.840446599796e-01, 4.932054884924e-05, 1.8274e+00, 1.4512e-02, + 2DIAGNOSTIC, 60, -5.840478481125e-01, 3.375001173123e-05, 1.8402e+00, 1.2782e-02, + 2DIAGNOSTIC, 61, -5.840379212366e-01, 1.949416866551e-05, 1.8529e+00, 1.2644e-02, + 2DIAGNOSTIC, 62, -5.840464052504e-01, 7.404614983043e-06, 1.8656e+00, 1.2764e-02, + 2DIAGNOSTIC, 63, -5.840754546014e-01, 1.551049769767e-06, 1.8783e+00, 1.2684e-02, + 2DIAGNOSTIC, 64, -5.841435048770e-01, 1.144418137831e-06, 1.8911e+00, 1.2842e-02, + 2DIAGNOSTIC, 65, -5.841767325979e-01, 1.637504103633e-06, 1.9077e+00, 1.6571e-02, + 2DIAGNOSTIC, 66, -5.841920904687e-01, 2.683319134559e-06, 1.9224e+00, 1.4728e-02, + 2DIAGNOSTIC, 67, -5.841399783832e-01, 3.078760532686e-06, 1.9361e+00, 1.3633e-02, + 2DIAGNOSTIC, 68, -5.841388522415e-01, 3.249522269409e-06, 1.9485e+00, 1.2434e-02, + 2DIAGNOSTIC, 69, -5.841757017000e-01, 3.097077661711e-06, 1.9608e+00, 1.2279e-02, + 2DIAGNOSTIC, 70, -5.842515726808e-01, 3.276758216254e-06, 1.9754e+00, 1.4649e-02, + 2DIAGNOSTIC, 71, -5.842521398099e-01, 3.108189619225e-06, 1.9907e+00, 1.5252e-02, + 2DIAGNOSTIC, 72, -5.842461022605e-01, 2.730173135280e-06, 2.0038e+00, 1.3111e-02, + 2DIAGNOSTIC, 73, -5.842056144769e-01, 2.065444338006e-06, 2.0167e+00, 1.2901e-02, + 2DIAGNOSTIC, 74, -5.842579681939e-01, 2.105635066457e-06, 2.0295e+00, 1.2766e-02, + 2DIAGNOSTIC, 75, -5.843132185833e-01, 2.569654841180e-06, 2.0458e+00, 1.6326e-02, + 2DIAGNOSTIC, 76, -5.843134544843e-01, 2.924966027032e-06, 2.0663e+00, 2.0518e-02, + 2DIAGNOSTIC, 77, -5.843874534827e-01, 3.203035244216e-06, 2.0813e+00, 1.4953e-02, + 2DIAGNOSTIC, 78, -5.843900595514e-01, 3.211422162913e-06, 2.0945e+00, 1.3190e-02, + 2DIAGNOSTIC, 79, -5.843770685086e-01, 3.093083991518e-06, 2.1096e+00, 1.5111e-02, + 2DIAGNOSTIC, 80, -5.843941499844e-01, 3.322593001754e-06, 2.1225e+00, 1.2884e-02, + 2DIAGNOSTIC, 81, -5.843817559343e-01, 3.187009903396e-06, 2.1353e+00, 1.2873e-02, + 2DIAGNOSTIC, 82, -5.843870940616e-01, 2.794572786137e-06, 2.1481e+00, 1.2727e-02, + 2DIAGNOSTIC, 83, -5.843951523064e-01, 1.972834731623e-06, 2.1608e+00, 1.2729e-02, + 2DIAGNOSTIC, 84, -5.844342512885e-01, 1.580723811253e-06, 2.1733e+00, 1.2520e-02, + 2DIAGNOSTIC, 85, -5.844432526804e-01, 1.474478987238e-06, 2.1878e+00, 1.4479e-02, + 2DIAGNOSTIC, 86, -5.844403156982e-01, 1.239619383368e-06, 2.2099e+00, 2.2157e-02, + 2DIAGNOSTIC, 87, -5.844487965766e-01, 1.423157281790e-06, 2.2227e+00, 1.2769e-02, + 2DIAGNOSTIC, 88, -5.844647182666e-01, 1.610596799432e-06, 2.2374e+00, 1.4691e-02, + 2DIAGNOSTIC, 89, -5.844343314729e-01, 1.413881718560e-06, 2.2498e+00, 1.2429e-02, + 2DIAGNOSTIC, 90, -5.844507943717e-01, 1.322263024238e-06, 2.2646e+00, 1.4769e-02, + 2DIAGNOSTIC, 91, -5.844676119722e-01, 1.166133312514e-06, 2.2796e+00, 1.5042e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.897098796608e-01, 1.797693134862e+308, 2.7015e+00, 4.2183e-01, + 2DIAGNOSTIC, 2, -4.900503950083e-01, 1.797693134862e+308, 2.7849e+00, 8.3415e-02, + 2DIAGNOSTIC, 3, -4.902337887285e-01, 1.797693134862e+308, 2.8852e+00, 1.0028e-01, + 2DIAGNOSTIC, 4, -4.903190144481e-01, 1.797693134862e+308, 2.9719e+00, 8.6775e-02, + 2DIAGNOSTIC, 5, -4.903610497291e-01, 1.797693134862e+308, 3.0590e+00, 8.7031e-02, + 2DIAGNOSTIC, 6, -4.905778239040e-01, 1.797693134862e+308, 3.1695e+00, 1.1054e-01, + 2DIAGNOSTIC, 7, -4.906282944660e-01, 1.797693134862e+308, 3.2567e+00, 8.7153e-02, + 2DIAGNOSTIC, 8, -4.907152758023e-01, 1.797693134862e+308, 3.3563e+00, 9.9591e-02, + 2DIAGNOSTIC, 9, -4.908643252286e-01, 1.797693134862e+308, 3.4532e+00, 9.6992e-02, + 2DIAGNOSTIC, 10, -4.909551216553e-01, 1.465808725989e-04, 3.6160e+00, 1.6275e-01, + 2DIAGNOSTIC, 11, -4.909679117467e-01, 1.137368886399e-04, 3.6987e+00, 8.2651e-02, + 2DIAGNOSTIC, 12, -4.910556309592e-01, 9.699374079622e-05, 3.7809e+00, 8.2203e-02, + 2DIAGNOSTIC, 13, -4.911092127958e-01, 8.480487900558e-05, 3.8744e+00, 9.3511e-02, + 2DIAGNOSTIC, 14, -4.911202836234e-01, 7.081335836852e-05, 3.9736e+00, 9.9191e-02, + 2DIAGNOSTIC, 15, -4.911309750791e-01, 5.429186216223e-05, 4.0685e+00, 9.4909e-02, + 2DIAGNOSTIC, 16, -4.911229721030e-01, 4.267828854576e-05, 4.1776e+00, 1.0916e-01, + 2DIAGNOSTIC, 17, -4.911201892667e-01, 3.029736886748e-05, 4.2765e+00, 9.8867e-02, + 2DIAGNOSTIC, 18, -4.911140378102e-01, 1.913661059135e-05, 4.3756e+00, 9.9083e-02, + 2DIAGNOSTIC, 19, -4.911246237565e-01, 1.236417841963e-05, 4.4620e+00, 8.6394e-02, + 2DIAGNOSTIC, 20, -4.911327836233e-01, 8.169126251727e-06, 4.5762e+00, 1.1427e-01, + 2DIAGNOSTIC, 21, -4.911302818341e-01, 3.995514390558e-06, 4.6723e+00, 9.6071e-02, + 2DIAGNOSTIC, 22, -4.911258426789e-01, 2.141415434698e-06, 4.7733e+00, 1.0098e-01, + 2DIAGNOSTIC, 23, -4.911245649823e-01, 1.700111874420e-06, 4.8551e+00, 8.1826e-02, + 2DIAGNOSTIC, 24, -4.911343041177e-01, 1.751325679804e-06, 4.9531e+00, 9.7958e-02, + 2DIAGNOSTIC, 25, -4.911346535478e-01, 2.004082199761e-06, 5.0410e+00, 8.7949e-02, + 2DIAGNOSTIC, 26, -4.911369506444e-01, 2.048093937050e-06, 5.1391e+00, 9.8070e-02, + 2DIAGNOSTIC, 27, -4.911394748082e-01, 2.019057801686e-06, 5.2408e+00, 1.0173e-01, + 2DIAGNOSTIC, 28, -4.911401292666e-01, 1.793316955274e-06, 5.3260e+00, 8.5223e-02, + 2DIAGNOSTIC, 29, -4.911379351002e-01, 1.679732608707e-06, 5.4240e+00, 9.7999e-02, + 2DIAGNOSTIC, 30, -4.911385681078e-01, 1.689480345068e-06, 5.5066e+00, 8.2528e-02, + 2DIAGNOSTIC, 31, -4.911393395423e-01, 1.610276953959e-06, 5.6029e+00, 9.6312e-02, + 2DIAGNOSTIC, 32, -4.911385154471e-01, 1.386509748680e-06, 5.7016e+00, 9.8685e-02, + 2DIAGNOSTIC, 33, -4.911388668174e-01, 1.119252817428e-06, 5.7987e+00, 9.7180e-02, + 2DIAGNOSTIC, 34, -4.911434868765e-01, 1.098940865540e-06, 6.1221e+00, 3.2340e-01, + 2DIAGNOSTIC, 35, -4.911434868595e-01, 1.067252210413e-06, 6.4398e+00, 3.1762e-01, + 2DIAGNOSTIC, 36, -4.911434868595e-01, 1.058415774871e-06, 6.5793e+00, 1.3956e-01, + 2DIAGNOSTIC, 37, -4.911434868595e-01, 1.073733755578e-06, 6.6921e+00, 1.1275e-01, + 2DIAGNOSTIC, 38, -4.911434868595e-01, 1.078825930496e-06, 6.7923e+00, 1.0021e-01, + 2DIAGNOSTIC, 39, -4.911434868595e-01, 1.026575230791e-06, 6.8924e+00, 1.0014e-01, + Elapsed time (stage 0): 7.0586e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.136195933724e-01, 1.797693134862e+308, 2.0433e-01, 2.0433e-01, + 2DIAGNOSTIC, 2, -8.166580467350e-01, 1.797693134862e+308, 2.0567e-01, 1.3340e-03, + 2DIAGNOSTIC, 3, -8.211231555633e-01, 1.797693134862e+308, 2.0699e-01, 1.3230e-03, + 2DIAGNOSTIC, 4, -8.282847577231e-01, 1.797693134862e+308, 2.0831e-01, 1.3251e-03, + 2DIAGNOSTIC, 5, -8.384527723430e-01, 1.797693134862e+308, 2.0961e-01, 1.2929e-03, + 2DIAGNOSTIC, 6, -8.484044708713e-01, 1.797693134862e+308, 2.1089e-01, 1.2820e-03, + 2DIAGNOSTIC, 7, -8.671329482574e-01, 1.797693134862e+308, 2.1220e-01, 1.3092e-03, + 2DIAGNOSTIC, 8, -8.873253413473e-01, 1.797693134862e+308, 2.1370e-01, 1.5030e-03, + 2DIAGNOSTIC, 9, -8.953312961181e-01, 1.797693134862e+308, 2.1639e-01, 2.6908e-03, + 2DIAGNOSTIC, 10, -8.949252546112e-01, 7.225855247705e-03, 2.1811e-01, 1.7209e-03, + 2DIAGNOSTIC, 11, -8.951122471251e-01, 6.526666866943e-03, 2.1960e-01, 1.4830e-03, + 2DIAGNOSTIC, 12, -8.953128838736e-01, 5.450475275218e-03, 2.2108e-01, 1.4858e-03, + 2DIAGNOSTIC, 13, -8.965012995304e-01, 4.189748925905e-03, 2.2280e-01, 1.7149e-03, + 2DIAGNOSTIC, 14, -8.976940995979e-01, 2.930290580821e-03, 2.2424e-01, 1.4420e-03, + 2DIAGNOSTIC, 15, -8.975649959970e-01, 1.802863815267e-03, 2.2596e-01, 1.7262e-03, + 2DIAGNOSTIC, 16, -8.976945643116e-01, 8.600175386911e-04, 2.2749e-01, 1.5299e-03, + 2DIAGNOSTIC, 17, -8.977300085990e-01, 3.041156650323e-04, 2.2921e-01, 1.7190e-03, + 2DIAGNOSTIC, 18, -8.988171190149e-01, 1.648253687267e-04, 2.3086e-01, 1.6441e-03, + 2DIAGNOSTIC, 19, -8.993836120548e-01, 1.718261750355e-04, 2.3234e-01, 1.4830e-03, + 2DIAGNOSTIC, 20, -9.007564793420e-01, 1.782036608497e-04, 2.3379e-01, 1.4520e-03, + 2DIAGNOSTIC, 21, -9.031446305834e-01, 2.074812426176e-04, 2.3526e-01, 1.4670e-03, + 2DIAGNOSTIC, 22, -9.058262093133e-01, 2.562133674753e-04, 2.3677e-01, 1.5059e-03, + 2DIAGNOSTIC, 23, -9.172020831728e-01, 4.521470357666e-04, 2.3874e-01, 1.9732e-03, + 2DIAGNOSTIC, 24, -9.303162076186e-01, 7.772418213223e-04, 2.4072e-01, 1.9789e-03, + 2DIAGNOSTIC, 25, -9.318858092914e-01, 1.017958414941e-03, 2.4269e-01, 1.9689e-03, + 2DIAGNOSTIC, 26, -9.316191328517e-01, 1.145345968654e-03, 2.4441e-01, 1.7240e-03, + 2DIAGNOSTIC, 27, -9.299469363259e-01, 1.137592634443e-03, 2.4591e-01, 1.5011e-03, + 2DIAGNOSTIC, 28, -9.307597399745e-01, 1.043480598745e-03, 2.4787e-01, 1.9631e-03, + 2DIAGNOSTIC, 29, -9.302309602236e-01, 8.551854300106e-04, 2.4941e-01, 1.5380e-03, + 2DIAGNOSTIC, 30, -9.297718634414e-01, 6.098611043729e-04, 2.5119e-01, 1.7819e-03, + 2DIAGNOSTIC, 31, -9.286855976669e-01, 3.399517945948e-04, 2.5267e-01, 1.4801e-03, + 2DIAGNOSTIC, 32, -9.293037275560e-01, 8.732448754875e-05, 2.5423e-01, 1.5550e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.784279316104e-01, 1.797693134862e+308, 4.6182e-01, 2.0759e-01, + 2DIAGNOSTIC, 2, -7.776509649000e-01, 1.797693134862e+308, 4.6408e-01, 2.2621e-03, + 2DIAGNOSTIC, 3, -7.781967259678e-01, 1.797693134862e+308, 4.6667e-01, 2.5880e-03, + 2DIAGNOSTIC, 4, -7.787602246385e-01, 1.797693134862e+308, 4.6889e-01, 2.2168e-03, + 2DIAGNOSTIC, 5, -7.791770283809e-01, 1.797693134862e+308, 4.7121e-01, 2.3179e-03, + 2DIAGNOSTIC, 6, -7.800439713418e-01, 1.797693134862e+308, 4.7338e-01, 2.1708e-03, + 2DIAGNOSTIC, 7, -7.817293007976e-01, 1.797693134862e+308, 4.7555e-01, 2.1770e-03, + 2DIAGNOSTIC, 8, -7.861304433021e-01, 1.797693134862e+308, 4.7773e-01, 2.1770e-03, + 2DIAGNOSTIC, 9, -7.930704315912e-01, 1.797693134862e+308, 4.8026e-01, 2.5270e-03, + 2DIAGNOSTIC, 10, -7.949465387987e-01, 1.349721232712e-03, 4.8330e-01, 3.0398e-03, + 2DIAGNOSTIC, 11, -7.971205602667e-01, 1.573816382111e-03, 4.8621e-01, 2.9171e-03, + 2DIAGNOSTIC, 12, -7.970111729895e-01, 1.593321031868e-03, 4.8910e-01, 2.8820e-03, + 2DIAGNOSTIC, 13, -7.961021465080e-01, 1.455138631979e-03, 4.9179e-01, 2.6920e-03, + 2DIAGNOSTIC, 14, -7.963880032210e-01, 1.225585559399e-03, 4.9443e-01, 2.6371e-03, + 2DIAGNOSTIC, 15, -7.966614217293e-01, 9.315161248551e-04, 4.9706e-01, 2.6300e-03, + 2DIAGNOSTIC, 16, -7.968063967647e-01, 6.134996188165e-04, 4.9968e-01, 2.6281e-03, + 2DIAGNOSTIC, 17, -7.966657398484e-01, 3.095508693590e-04, 5.0236e-01, 2.6741e-03, + 2DIAGNOSTIC, 18, -7.968690716224e-01, 1.011208393751e-04, 5.0504e-01, 2.6858e-03, + 2DIAGNOSTIC, 19, -7.969596592718e-01, 3.816054500868e-05, 5.0782e-01, 2.7730e-03, + 2DIAGNOSTIC, 20, -7.970400238283e-01, 1.180028984308e-05, 5.1054e-01, 2.7201e-03, + 2DIAGNOSTIC, 21, -7.965838107029e-01, 1.637899808400e-05, 5.1487e-01, 4.3380e-03, + 2DIAGNOSTIC, 22, -7.965743900226e-01, 1.803610143958e-05, 5.1750e-01, 2.6300e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.632590607951e-01, 1.797693134862e+308, 7.5475e-01, 2.3725e-01, + 2DIAGNOSTIC, 2, -6.648100570074e-01, 1.797693134862e+308, 7.6859e-01, 1.3833e-02, + 2DIAGNOSTIC, 3, -6.666658822790e-01, 1.797693134862e+308, 7.8284e-01, 1.4248e-02, + 2DIAGNOSTIC, 4, -6.686626652105e-01, 1.797693134862e+308, 7.9661e-01, 1.3776e-02, + 2DIAGNOSTIC, 5, -6.698746339363e-01, 1.797693134862e+308, 8.1051e-01, 1.3897e-02, + 2DIAGNOSTIC, 6, -6.712405697758e-01, 1.797693134862e+308, 8.2355e-01, 1.3037e-02, + 2DIAGNOSTIC, 7, -6.732629832588e-01, 1.797693134862e+308, 8.3872e-01, 1.5175e-02, + 2DIAGNOSTIC, 8, -6.747922778141e-01, 1.797693134862e+308, 8.5993e-01, 2.1210e-02, + 2DIAGNOSTIC, 9, -6.747104286111e-01, 1.797693134862e+308, 8.7335e-01, 1.3420e-02, + 2DIAGNOSTIC, 10, -6.751444536896e-01, 1.216513830139e-03, 8.8671e-01, 1.3364e-02, + 2DIAGNOSTIC, 11, -6.756331975235e-01, 9.700077181444e-04, 9.0276e-01, 1.6044e-02, + 2DIAGNOSTIC, 12, -6.760594095912e-01, 7.456594865539e-04, 9.1695e-01, 1.4189e-02, + 2DIAGNOSTIC, 13, -6.763957904649e-01, 5.586400313536e-04, 9.3285e-01, 1.5900e-02, + 2DIAGNOSTIC, 14, -6.766783819039e-01, 4.172461965972e-04, 9.5286e-01, 2.0009e-02, + 2DIAGNOSTIC, 15, -6.766061705166e-01, 2.892080086138e-04, 9.7697e-01, 2.4112e-02, + 2DIAGNOSTIC, 16, -6.766165199572e-01, 1.862140762051e-04, 9.9297e-01, 1.6001e-02, + 2DIAGNOSTIC, 17, -6.766049357341e-01, 1.273139550907e-04, 1.0109e+00, 1.7973e-02, + 2DIAGNOSTIC, 18, -6.766272497513e-01, 9.996570582107e-05, 1.0271e+00, 1.6160e-02, + 2DIAGNOSTIC, 19, -6.765949929163e-01, 6.374670753510e-05, 1.0410e+00, 1.3851e-02, + 2DIAGNOSTIC, 20, -6.765999154636e-01, 3.461708749681e-05, 1.0568e+00, 1.5852e-02, + 2DIAGNOSTIC, 21, -6.766042195360e-01, 1.503497052163e-05, 1.0715e+00, 1.4700e-02, + 2DIAGNOSTIC, 22, -6.765761632152e-01, 3.462892340871e-06, 1.0858e+00, 1.4248e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.687104184388e-01, 1.797693134862e+308, 1.5196e+00, 4.3383e-01, + 2DIAGNOSTIC, 2, -5.694908356985e-01, 1.797693134862e+308, 1.6170e+00, 9.7430e-02, + 2DIAGNOSTIC, 3, -5.701491443569e-01, 1.797693134862e+308, 1.7158e+00, 9.8828e-02, + 2DIAGNOSTIC, 4, -5.705795811422e-01, 1.797693134862e+308, 1.8171e+00, 1.0127e-01, + 2DIAGNOSTIC, 5, -5.709798737965e-01, 1.797693134862e+308, 1.9181e+00, 1.0097e-01, + 2DIAGNOSTIC, 6, -5.718334019469e-01, 1.797693134862e+308, 2.0320e+00, 1.1390e-01, + 2DIAGNOSTIC, 7, -5.730930616332e-01, 1.797693134862e+308, 2.1302e+00, 9.8225e-02, + 2DIAGNOSTIC, 8, -5.735676190104e-01, 1.797693134862e+308, 2.2582e+00, 1.2797e-01, + 2DIAGNOSTIC, 9, -5.736940344870e-01, 1.797693134862e+308, 2.3955e+00, 1.3737e-01, + 2DIAGNOSTIC, 10, -5.737756568503e-01, 6.223197993100e-04, 2.4887e+00, 9.3170e-02, + 2DIAGNOSTIC, 11, -5.740363195598e-01, 5.142323420490e-04, 2.5955e+00, 1.0675e-01, + 2DIAGNOSTIC, 12, -5.742127622198e-01, 4.164340202048e-04, 2.6890e+00, 9.3489e-02, + 2DIAGNOSTIC, 13, -5.743202307268e-01, 3.253583570007e-04, 2.7947e+00, 1.0578e-01, + 2DIAGNOSTIC, 14, -5.750413001888e-01, 2.594905461036e-04, 2.8892e+00, 9.4488e-02, + 2DIAGNOSTIC, 15, -5.757913219577e-01, 2.163251959521e-04, 3.0153e+00, 1.2606e-01, + 2DIAGNOSTIC, 16, -5.763167211159e-01, 2.003099872029e-04, 3.1220e+00, 1.0672e-01, + 2DIAGNOSTIC, 17, -5.767210097438e-01, 2.162009034272e-04, 3.2293e+00, 1.0730e-01, + 2DIAGNOSTIC, 18, -5.768710704537e-01, 2.278173110955e-04, 3.3900e+00, 1.6071e-01, + 2DIAGNOSTIC, 19, -5.768762833488e-01, 2.206303679306e-04, 3.4877e+00, 9.7640e-02, + 2DIAGNOSTIC, 20, -5.770060024186e-01, 1.987454110554e-04, 3.6011e+00, 1.1347e-01, + 2DIAGNOSTIC, 21, -5.770114155229e-01, 1.667202270504e-04, 3.7147e+00, 1.1361e-01, + 2DIAGNOSTIC, 22, -5.770170408861e-01, 1.265240490635e-04, 3.8579e+00, 1.4317e-01, + 2DIAGNOSTIC, 23, -5.770155176276e-01, 8.031204927288e-05, 3.9701e+00, 1.1222e-01, + 2DIAGNOSTIC, 24, -5.770120898172e-01, 4.517696503735e-05, 4.1458e+00, 1.7568e-01, + 2DIAGNOSTIC, 25, -5.770106226356e-01, 2.337262573697e-05, 4.2611e+00, 1.1526e-01, + 2DIAGNOSTIC, 26, -5.770091582992e-01, 1.094923307562e-05, 4.3739e+00, 1.1289e-01, + 2DIAGNOSTIC, 27, -5.770058611261e-01, 5.840014689708e-06, 4.4719e+00, 9.7923e-02, + 2DIAGNOSTIC, 28, -5.770046457452e-01, 3.315195543363e-06, 4.5702e+00, 9.8338e-02, + Elapsed time (stage 1): 4.6996e+00 + + +Total elapsed time: 1.1761e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:47:47 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:47:48 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x559e2276b4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.803, 68.5715, -107.025] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559e22770fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe377495010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x559e2276c850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.803, 68.5715, -107.025] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559e22769f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe373dd6010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x559e22783b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.803, 68.5715, -107.025] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559e22770550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe370717010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x559e22788d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.803, 68.5715, -107.025] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559e22786c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe36d058010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x559e2278af70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.803, 68.5715, -107.025] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559e227893a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe369999010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x559e2278b540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [104.803, 68.5715, -107.025] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559e2278b4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe3662da010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.259823096658e-01, 1.797693134862e+308, 2.1845e-01, 2.1845e-01, + 2DIAGNOSTIC, 2, -6.284201439546e-01, 1.797693134862e+308, 2.2055e-01, 2.0969e-03, + 2DIAGNOSTIC, 3, -6.323139047913e-01, 1.797693134862e+308, 2.2259e-01, 2.0440e-03, + 2DIAGNOSTIC, 4, -6.381190409613e-01, 1.797693134862e+308, 2.2459e-01, 1.9951e-03, + 2DIAGNOSTIC, 5, -6.431418430072e-01, 1.797693134862e+308, 2.2659e-01, 2.0010e-03, + 2DIAGNOSTIC, 6, -6.474059913140e-01, 1.797693134862e+308, 2.2864e-01, 2.0471e-03, + 2DIAGNOSTIC, 7, -6.508429123095e-01, 1.797693134862e+308, 2.3093e-01, 2.2919e-03, + 2DIAGNOSTIC, 8, -6.524794283635e-01, 1.797693134862e+308, 2.3375e-01, 2.8219e-03, + 2DIAGNOSTIC, 9, -6.526801588288e-01, 1.797693134862e+308, 2.3573e-01, 1.9782e-03, + 2DIAGNOSTIC, 10, -6.530993407218e-01, 3.060697015962e-03, 2.3855e-01, 2.8179e-03, + 2DIAGNOSTIC, 11, -6.534411617893e-01, 2.345108376203e-03, 2.4103e-01, 2.4860e-03, + 2DIAGNOSTIC, 12, -6.534723026177e-01, 1.629977138830e-03, 2.4351e-01, 2.4738e-03, + 2DIAGNOSTIC, 13, -6.533538427643e-01, 1.005233780666e-03, 2.4570e-01, 2.1989e-03, + 2DIAGNOSTIC, 14, -6.532447141946e-01, 5.577360416275e-04, 2.4790e-01, 2.1949e-03, + 2DIAGNOSTIC, 15, -6.534206076836e-01, 2.705616313642e-04, 2.5012e-01, 2.2190e-03, + 2DIAGNOSTIC, 16, -6.536188300084e-01, 1.151553498576e-04, 2.5263e-01, 2.5070e-03, + 2DIAGNOSTIC, 17, -6.536526475192e-01, 5.634883337810e-05, 2.5487e-01, 2.2480e-03, + 2DIAGNOSTIC, 18, -6.536873665218e-01, 4.015390637293e-05, 2.5792e-01, 3.0432e-03, + 2DIAGNOSTIC, 19, -6.538341190764e-01, 3.007824487104e-05, 2.6016e-01, 2.2390e-03, + 2DIAGNOSTIC, 20, -6.538407884546e-01, 2.732894512104e-05, 2.6234e-01, 2.1811e-03, + 2DIAGNOSTIC, 21, -6.539848906736e-01, 3.246510856898e-05, 2.6540e-01, 3.0591e-03, + 2DIAGNOSTIC, 22, -6.538598758053e-01, 3.241043419227e-05, 2.6758e-01, 2.1842e-03, + 2DIAGNOSTIC, 23, -6.538647449665e-01, 2.754274184302e-05, 2.6977e-01, 2.1870e-03, + 2DIAGNOSTIC, 24, -6.540051503979e-01, 2.113024723695e-05, 2.7198e-01, 2.2168e-03, + 2DIAGNOSTIC, 25, -6.541634128448e-01, 1.901907172255e-05, 2.7505e-01, 3.0630e-03, + 2DIAGNOSTIC, 26, -6.540432887916e-01, 1.666981079938e-05, 2.7736e-01, 2.3141e-03, + 2DIAGNOSTIC, 27, -6.540461815916e-01, 1.379998357703e-05, 2.7960e-01, 2.2399e-03, + 2DIAGNOSTIC, 28, -6.540522607281e-01, 1.057085319792e-05, 2.8179e-01, 2.1880e-03, + 2DIAGNOSTIC, 29, -6.540639855812e-01, 8.981623101145e-06, 2.8431e-01, 2.5201e-03, + 2DIAGNOSTIC, 30, -6.540831113150e-01, 7.006053362180e-06, 2.8663e-01, 2.3239e-03, + 2DIAGNOSTIC, 31, -6.539974346674e-01, 5.519989448026e-06, 2.9065e-01, 4.0209e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.418089648992e-01, 1.797693134862e+308, 5.1647e-01, 2.2581e-01, + 2DIAGNOSTIC, 2, -5.430009898140e-01, 1.797693134862e+308, 5.3234e-01, 1.5876e-02, + 2DIAGNOSTIC, 3, -5.443952355347e-01, 1.797693134862e+308, 5.5032e-01, 1.7975e-02, + 2DIAGNOSTIC, 4, -5.449210700674e-01, 1.797693134862e+308, 5.6749e-01, 1.7176e-02, + 2DIAGNOSTIC, 5, -5.450689600892e-01, 1.797693134862e+308, 5.8316e-01, 1.5671e-02, + 2DIAGNOSTIC, 6, -5.451119051254e-01, 1.797693134862e+308, 5.9966e-01, 1.6492e-02, + 2DIAGNOSTIC, 7, -5.451322846695e-01, 1.797693134862e+308, 6.1603e-01, 1.6375e-02, + 2DIAGNOSTIC, 8, -5.451501766538e-01, 1.797693134862e+308, 6.3150e-01, 1.5466e-02, + 2DIAGNOSTIC, 9, -5.451315160860e-01, 1.797693134862e+308, 6.4700e-01, 1.5502e-02, + 2DIAGNOSTIC, 10, -5.451414141358e-01, 3.074640449758e-04, 6.6306e-01, 1.6062e-02, + 2DIAGNOSTIC, 11, -5.451224043935e-01, 1.434477416968e-04, 6.7989e-01, 1.6828e-02, + 2DIAGNOSTIC, 12, -5.451273480745e-01, 4.488087453236e-05, 6.9597e-01, 1.6086e-02, + 2DIAGNOSTIC, 13, -5.451488604300e-01, 1.398337105254e-05, 7.1395e-01, 1.7973e-02, + 2DIAGNOSTIC, 14, -5.451486273946e-01, 5.895231950589e-06, 7.2974e-01, 1.5790e-02, + 2DIAGNOSTIC, 15, -5.451479363417e-01, 3.663126844689e-06, 7.4537e-01, 1.5634e-02, + 2DIAGNOSTIC, 16, -5.451469839108e-01, 2.936973828055e-06, 7.5943e-01, 1.4055e-02, + 2DIAGNOSTIC, 17, -5.451534166300e-01, 3.011858116450e-06, 7.7874e-01, 1.9312e-02, + 2DIAGNOSTIC, 18, -5.451466338589e-01, 3.288125873031e-06, 7.9271e-01, 1.3969e-02, + 2DIAGNOSTIC, 19, -5.451308869481e-01, 2.442882491051e-06, 8.0907e-01, 1.6365e-02, + 2DIAGNOSTIC, 20, -5.451113094752e-01, 1.396135772484e-06, 8.2272e-01, 1.3652e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.599603855344e-01, 1.797693134862e+308, 1.2014e+00, 3.7865e-01, + 2DIAGNOSTIC, 2, -4.602450604975e-01, 1.797693134862e+308, 1.2947e+00, 9.3283e-02, + 2DIAGNOSTIC, 3, -4.603833502008e-01, 1.797693134862e+308, 1.4386e+00, 1.4395e-01, + 2DIAGNOSTIC, 4, -4.603803555322e-01, 1.797693134862e+308, 1.5705e+00, 1.3193e-01, + 2DIAGNOSTIC, 5, -4.603789747226e-01, 1.797693134862e+308, 1.6775e+00, 1.0695e-01, + 2DIAGNOSTIC, 6, -4.603788563941e-01, 1.797693134862e+308, 1.7999e+00, 1.2242e-01, + 2DIAGNOSTIC, 7, -4.603784157962e-01, 1.797693134862e+308, 1.8956e+00, 9.5680e-02, + 2DIAGNOSTIC, 8, -4.603764767782e-01, 1.797693134862e+308, 2.0161e+00, 1.2051e-01, + 2DIAGNOSTIC, 9, -4.603791983382e-01, 1.797693134862e+308, 2.1244e+00, 1.0826e-01, + 2DIAGNOSTIC, 10, -4.603782862832e-01, 3.586225584695e-05, 2.2191e+00, 9.4789e-02, + 2DIAGNOSTIC, 11, -4.603785700846e-01, 1.002233474519e-05, 2.3257e+00, 1.0656e-01, + 2DIAGNOSTIC, 12, -4.603820549600e-01, 2.471038513252e-06, 2.4326e+00, 1.0693e-01, + 2DIAGNOSTIC, 13, -4.603819626240e-01, 2.660191375931e-06, 2.5839e+00, 1.5122e-01, + 2DIAGNOSTIC, 14, -4.603810256200e-01, 2.631574521669e-06, 2.6939e+00, 1.1004e-01, + 2DIAGNOSTIC, 15, -4.603801628609e-01, 2.483817802712e-06, 2.7959e+00, 1.0196e-01, + 2DIAGNOSTIC, 16, -4.603793006241e-01, 2.284608975264e-06, 2.8834e+00, 8.7497e-02, + 2DIAGNOSTIC, 17, -4.603787597316e-01, 2.046387848599e-06, 2.9778e+00, 9.4420e-02, + 2DIAGNOSTIC, 18, -4.603761088561e-01, 1.657560431093e-06, 3.0742e+00, 9.6383e-02, + 2DIAGNOSTIC, 19, -4.603783574133e-01, 1.486563559173e-06, 3.1837e+00, 1.0955e-01, + 2DIAGNOSTIC, 20, -4.603775680515e-01, 1.296008755008e-06, 3.2936e+00, 1.0989e-01, + 2DIAGNOSTIC, 21, -4.603754293952e-01, 1.093869300126e-06, 3.3897e+00, 9.6150e-02, + 2DIAGNOSTIC, 22, -4.603778465872e-01, 1.117503175427e-06, 3.4992e+00, 1.0946e-01, + 2DIAGNOSTIC, 23, -4.603775724090e-01, 1.158176535780e-06, 3.5998e+00, 1.0058e-01, + 2DIAGNOSTIC, 24, -4.603746461833e-01, 1.116725281948e-06, 3.7165e+00, 1.1668e-01, + 2DIAGNOSTIC, 25, -4.603732828895e-01, 1.045880305528e-06, 3.8398e+00, 1.2329e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.976884577625e-01, 1.797693134862e+308, 5.1783e+00, 1.3386e+00, + 2DIAGNOSTIC, 2, -3.977322869683e-01, 1.797693134862e+308, 5.8082e+00, 6.2985e-01, + 2DIAGNOSTIC, 3, -3.977351040602e-01, 1.797693134862e+308, 6.4659e+00, 6.5770e-01, + 2DIAGNOSTIC, 4, -3.977345025455e-01, 1.797693134862e+308, 7.2391e+00, 7.7316e-01, + 2DIAGNOSTIC, 5, -3.977342919543e-01, 1.797693134862e+308, 8.1356e+00, 8.9659e-01, + 2DIAGNOSTIC, 6, -3.977344498949e-01, 1.797693134862e+308, 8.8258e+00, 6.9020e-01, + 2DIAGNOSTIC, 7, -3.977341990378e-01, 1.797693134862e+308, 9.4458e+00, 6.1999e-01, + 2DIAGNOSTIC, 8, -3.977338068385e-01, 1.797693134862e+308, 1.0186e+01, 7.4040e-01, + 2DIAGNOSTIC, 9, -3.977337061343e-01, 1.797693134862e+308, 1.0920e+01, 7.3336e-01, + 2DIAGNOSTIC, 10, -3.977335230665e-01, 6.416544195198e-06, 1.1505e+01, 5.8578e-01, + 2DIAGNOSTIC, 11, -3.977334084766e-01, 2.821248588566e-06, 1.2162e+01, 6.5645e-01, + 2DIAGNOSTIC, 12, -3.977332937759e-01, 2.429457612557e-06, 1.2841e+01, 6.7901e-01, + 2DIAGNOSTIC, 13, -3.977329785071e-01, 2.256779796372e-06, 1.3415e+01, 5.7406e-01, + 2DIAGNOSTIC, 14, -3.977327378050e-01, 2.083742669037e-06, 1.3968e+01, 5.5347e-01, + 2DIAGNOSTIC, 15, -3.977330462990e-01, 1.955220162969e-06, 1.4625e+01, 6.5633e-01, + 2DIAGNOSTIC, 16, -3.977331775117e-01, 1.870269284415e-06, 1.5278e+01, 6.5375e-01, + 2DIAGNOSTIC, 17, -3.977332127374e-01, 1.797378442886e-06, 1.5931e+01, 6.5220e-01, + 2DIAGNOSTIC, 18, -3.977329034141e-01, 1.711995013497e-06, 1.6571e+01, 6.4085e-01, + 2DIAGNOSTIC, 19, -3.977329251695e-01, 1.638405985022e-06, 1.7153e+01, 5.8144e-01, + 2DIAGNOSTIC, 20, -3.977330601588e-01, 1.573363583030e-06, 1.7915e+01, 7.6177e-01, + 2DIAGNOSTIC, 21, -3.977327050114e-01, 1.499564672242e-06, 1.8567e+01, 6.5193e-01, + 2DIAGNOSTIC, 22, -3.977327732017e-01, 1.433142724667e-06, 1.9182e+01, 6.1581e-01, + 2DIAGNOSTIC, 23, -3.977327475408e-01, 1.363525880267e-06, 1.9833e+01, 6.5080e-01, + 2DIAGNOSTIC, 24, -3.977326810440e-01, 1.292076966197e-06, 2.0453e+01, 6.2019e-01, + 2DIAGNOSTIC, 25, -3.977326145307e-01, 1.236199912560e-06, 2.1085e+01, 6.3195e-01, + 2DIAGNOSTIC, 26, -3.977325622791e-01, 1.190237937605e-06, 2.1750e+01, 6.6446e-01, + 2DIAGNOSTIC, 27, -3.977324785588e-01, 1.149823791541e-06, 2.2375e+01, 6.2474e-01, + 2DIAGNOSTIC, 28, -3.977323796867e-01, 1.104456722224e-06, 2.2922e+01, 5.4703e-01, + 2DIAGNOSTIC, 29, -3.977323100373e-01, 1.063910605024e-06, 2.3473e+01, 5.5109e-01, + 2DIAGNOSTIC, 30, -3.977324309277e-01, 1.035557392344e-06, 2.4030e+01, 5.5722e-01, + 2DIAGNOSTIC, 31, -3.977326351741e-01, 1.007719986318e-06, 2.4658e+01, 6.2828e-01, + Elapsed time (stage 0): 2.5023e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.315900197270e-01, 1.797693134862e+308, 1.9616e-01, 1.9616e-01, + 2DIAGNOSTIC, 2, -6.334334882052e-01, 1.797693134862e+308, 1.9832e-01, 2.1589e-03, + 2DIAGNOSTIC, 3, -6.356150263944e-01, 1.797693134862e+308, 2.0045e-01, 2.1341e-03, + 2DIAGNOSTIC, 4, -6.372704106426e-01, 1.797693134862e+308, 2.0257e-01, 2.1179e-03, + 2DIAGNOSTIC, 5, -6.376138531043e-01, 1.797693134862e+308, 2.0508e-01, 2.5091e-03, + 2DIAGNOSTIC, 6, -6.382930096588e-01, 1.797693134862e+308, 2.0720e-01, 2.1138e-03, + 2DIAGNOSTIC, 7, -6.386637922759e-01, 1.797693134862e+308, 2.1073e-01, 3.5300e-03, + 2DIAGNOSTIC, 8, -6.387982245426e-01, 1.797693134862e+308, 2.1282e-01, 2.0971e-03, + 2DIAGNOSTIC, 9, -6.388394955241e-01, 1.797693134862e+308, 2.1494e-01, 2.1210e-03, + 2DIAGNOSTIC, 10, -6.389160195825e-01, 6.746105306903e-04, 2.1740e-01, 2.4538e-03, + 2DIAGNOSTIC, 11, -6.389842177566e-01, 4.145384700117e-04, 2.1982e-01, 2.4271e-03, + 2DIAGNOSTIC, 12, -6.390673571761e-01, 2.308971782255e-04, 2.2226e-01, 2.4312e-03, + 2DIAGNOSTIC, 13, -6.391603032238e-01, 1.317430255607e-04, 2.2468e-01, 2.4250e-03, + 2DIAGNOSTIC, 14, -6.392866583382e-01, 9.185824673792e-05, 2.2748e-01, 2.7990e-03, + 2DIAGNOSTIC, 15, -6.400073441002e-01, 8.027586636539e-05, 2.3109e-01, 3.6111e-03, + 2DIAGNOSTIC, 16, -6.400548092008e-01, 8.244598004342e-05, 2.3400e-01, 2.9070e-03, + 2DIAGNOSTIC, 17, -6.400601535110e-01, 8.694923927590e-05, 2.3663e-01, 2.6309e-03, + 2DIAGNOSTIC, 18, -6.400663177940e-01, 8.683569934520e-05, 2.3896e-01, 2.3310e-03, + 2DIAGNOSTIC, 19, -6.400690251217e-01, 7.977697895482e-05, 2.4128e-01, 2.3170e-03, + 2DIAGNOSTIC, 20, -6.400711293132e-01, 6.764972311851e-05, 2.4351e-01, 2.2321e-03, + 2DIAGNOSTIC, 21, -6.400752125770e-01, 5.200379622494e-05, 2.4577e-01, 2.2631e-03, + 2DIAGNOSTIC, 22, -6.400819970583e-01, 3.509806765586e-05, 2.5022e-01, 4.4491e-03, + 2DIAGNOSTIC, 23, -6.400822196914e-01, 1.842942202301e-05, 2.5416e-01, 3.9370e-03, + 2DIAGNOSTIC, 24, -6.400822200927e-01, 3.528918952646e-06, 2.6157e-01, 7.4151e-03, + 2DIAGNOSTIC, 25, -6.400822200927e-01, 2.424860649601e-06, 2.6415e-01, 2.5799e-03, + 2DIAGNOSTIC, 26, -6.400822200927e-01, 2.107857927806e-06, 2.6720e-01, 3.0420e-03, + 2DIAGNOSTIC, 27, -6.400822200927e-01, 1.815445715807e-06, 2.6992e-01, 2.7220e-03, + 2DIAGNOSTIC, 28, -6.400822200927e-01, 1.581796486523e-06, 2.7288e-01, 2.9590e-03, + 2DIAGNOSTIC, 29, -6.400822200927e-01, 1.365460599527e-06, 2.7536e-01, 2.4829e-03, + 2DIAGNOSTIC, 30, -6.400822200927e-01, 1.169113867473e-06, 2.7785e-01, 2.4879e-03, + 2DIAGNOSTIC, 31, -6.400822200927e-01, 1.031186153279e-06, 2.8086e-01, 3.0119e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.448206181445e-01, 1.797693134862e+308, 4.8920e-01, 2.0834e-01, + 2DIAGNOSTIC, 2, -5.452438524632e-01, 1.797693134862e+308, 5.0402e-01, 1.4827e-02, + 2DIAGNOSTIC, 3, -5.458063224365e-01, 1.797693134862e+308, 5.1849e-01, 1.4470e-02, + 2DIAGNOSTIC, 4, -5.463075797171e-01, 1.797693134862e+308, 5.3312e-01, 1.4625e-02, + 2DIAGNOSTIC, 5, -5.468585187956e-01, 1.797693134862e+308, 5.4781e-01, 1.4687e-02, + 2DIAGNOSTIC, 6, -5.476140129007e-01, 1.797693134862e+308, 5.6395e-01, 1.6144e-02, + 2DIAGNOSTIC, 7, -5.481866014372e-01, 1.797693134862e+308, 5.8407e-01, 2.0124e-02, + 2DIAGNOSTIC, 8, -5.483993750223e-01, 1.797693134862e+308, 5.9966e-01, 1.5584e-02, + 2DIAGNOSTIC, 9, -5.485210857576e-01, 1.797693134862e+308, 6.1719e-01, 1.7529e-02, + 2DIAGNOSTIC, 10, -5.486877876756e-01, 4.994869637195e-04, 6.3131e-01, 1.4124e-02, + 2DIAGNOSTIC, 11, -5.489061307933e-01, 4.064784004210e-04, 6.4535e-01, 1.4044e-02, + 2DIAGNOSTIC, 12, -5.490743218991e-01, 3.177001924518e-04, 6.6148e-01, 1.6124e-02, + 2DIAGNOSTIC, 13, -5.492788169461e-01, 2.447564119079e-04, 6.7926e-01, 1.7778e-02, + 2DIAGNOSTIC, 14, -5.494408075478e-01, 1.848028274746e-04, 6.9595e-01, 1.6696e-02, + 2DIAGNOSTIC, 15, -5.496485988362e-01, 1.419357281562e-04, 7.1115e-01, 1.5196e-02, + 2DIAGNOSTIC, 16, -5.497634863191e-01, 1.192759474331e-04, 7.3499e-01, 2.3844e-02, + 2DIAGNOSTIC, 17, -5.497752019853e-01, 1.061837379436e-04, 7.4906e-01, 1.4073e-02, + 2DIAGNOSTIC, 18, -5.498273689212e-01, 9.260044057732e-05, 7.6416e-01, 1.5093e-02, + 2DIAGNOSTIC, 19, -5.498789889961e-01, 7.667845605510e-05, 7.7936e-01, 1.5207e-02, + 2DIAGNOSTIC, 20, -5.499117281759e-01, 6.039573158827e-05, 7.9442e-01, 1.5052e-02, + 2DIAGNOSTIC, 21, -5.499200066280e-01, 4.573614681602e-05, 8.0974e-01, 1.5326e-02, + 2DIAGNOSTIC, 22, -5.499775063535e-01, 3.359255167443e-05, 8.2695e-01, 1.7203e-02, + 2DIAGNOSTIC, 23, -5.499763490245e-01, 2.402759594367e-05, 8.4671e-01, 1.9761e-02, + 2DIAGNOSTIC, 24, -5.499954603339e-01, 1.694731781415e-05, 8.9641e-01, 4.9706e-02, + 2DIAGNOSTIC, 25, -5.499954603121e-01, 1.321809885575e-05, 9.1149e-01, 1.5081e-02, + 2DIAGNOSTIC, 26, -5.499954608283e-01, 1.095942653884e-05, 9.2705e-01, 1.5557e-02, + 2DIAGNOSTIC, 27, -5.499954617010e-01, 8.156850346316e-06, 9.4232e-01, 1.5267e-02, + 2DIAGNOSTIC, 28, -5.499954631761e-01, 5.839334616640e-06, 9.5745e-01, 1.5135e-02, + 2DIAGNOSTIC, 29, -5.499954656692e-01, 4.155990462260e-06, 9.7228e-01, 1.4826e-02, + 2DIAGNOSTIC, 30, -5.499954698811e-01, 2.867567063657e-06, 9.8709e-01, 1.4808e-02, + 2DIAGNOSTIC, 31, -5.499954769918e-01, 1.607399485043e-06, 1.0021e+00, 1.5049e-02, + 2DIAGNOSTIC, 32, -5.499954889837e-01, 1.306053160594e-06, 1.0167e+00, 1.4564e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.600703166173e-01, 1.797693134862e+308, 1.4012e+00, 3.8454e-01, + 2DIAGNOSTIC, 2, -4.606450401087e-01, 1.797693134862e+308, 1.5020e+00, 1.0081e-01, + 2DIAGNOSTIC, 3, -4.611750011258e-01, 1.797693134862e+308, 1.6034e+00, 1.0131e-01, + 2DIAGNOSTIC, 4, -4.614429417930e-01, 1.797693134862e+308, 1.7047e+00, 1.0138e-01, + 2DIAGNOSTIC, 5, -4.617096419414e-01, 1.797693134862e+308, 1.8187e+00, 1.1398e-01, + 2DIAGNOSTIC, 6, -4.620574702104e-01, 1.797693134862e+308, 2.0285e+00, 2.0981e-01, + 2DIAGNOSTIC, 7, -4.620618403202e-01, 1.797693134862e+308, 2.1434e+00, 1.1484e-01, + 2DIAGNOSTIC, 8, -4.620662502281e-01, 1.797693134862e+308, 2.2471e+00, 1.0378e-01, + 2DIAGNOSTIC, 9, -4.620700292034e-01, 1.797693134862e+308, 2.3492e+00, 1.0210e-01, + 2DIAGNOSTIC, 10, -4.620841540390e-01, 2.637137445902e-04, 2.4493e+00, 1.0002e-01, + 2DIAGNOSTIC, 11, -4.620988116712e-01, 1.627286068730e-04, 2.5493e+00, 1.0001e-01, + 2DIAGNOSTIC, 12, -4.621128674681e-01, 9.399641865648e-05, 2.6488e+00, 9.9566e-02, + 2DIAGNOSTIC, 13, -4.621226232643e-01, 5.321223350238e-05, 2.7621e+00, 1.1327e-01, + 2DIAGNOSTIC, 14, -4.621283873662e-01, 2.553486602573e-05, 2.8625e+00, 1.0044e-01, + 2DIAGNOSTIC, 15, -4.621359657089e-01, 1.027325188337e-05, 2.9633e+00, 1.0073e-01, + 2DIAGNOSTIC, 16, -4.621451576455e-01, 9.894000338379e-06, 3.0655e+00, 1.0220e-01, + 2DIAGNOSTIC, 17, -4.621536100951e-01, 9.286657594580e-06, 3.1665e+00, 1.0101e-01, + 2DIAGNOSTIC, 18, -4.621635459091e-01, 8.554295901450e-06, 3.2683e+00, 1.0185e-01, + 2DIAGNOSTIC, 19, -4.621925274868e-01, 8.325058059172e-06, 3.4583e+00, 1.8997e-01, + 2DIAGNOSTIC, 20, -4.621955117491e-01, 8.001235827101e-06, 3.5774e+00, 1.1908e-01, + 2DIAGNOSTIC, 21, -4.621931281345e-01, 7.471421330792e-06, 3.6968e+00, 1.1946e-01, + 2DIAGNOSTIC, 22, -4.621932010934e-01, 6.836637666305e-06, 3.8167e+00, 1.1986e-01, + 2DIAGNOSTIC, 23, -4.621932375972e-01, 6.009059093398e-06, 3.9361e+00, 1.1936e-01, + 2DIAGNOSTIC, 24, -4.621919892189e-01, 4.918748187102e-06, 4.0409e+00, 1.0483e-01, + 2DIAGNOSTIC, 25, -4.621922392559e-01, 3.768275424754e-06, 4.1420e+00, 1.0111e-01, + 2DIAGNOSTIC, 26, -4.621929102868e-01, 2.713540063801e-06, 4.2575e+00, 1.1547e-01, + 2DIAGNOSTIC, 27, -4.621938277594e-01, 1.812129701941e-06, 4.3728e+00, 1.1531e-01, + 2DIAGNOSTIC, 28, -4.621918968240e-01, 1.072748003719e-06, 4.4878e+00, 1.1499e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.972230355121e-01, 1.797693134862e+308, 5.8157e+00, 1.3279e+00, + 2DIAGNOSTIC, 2, -3.973686520535e-01, 1.797693134862e+308, 6.5098e+00, 6.9415e-01, + 2DIAGNOSTIC, 3, -3.974256948450e-01, 1.797693134862e+308, 7.2763e+00, 7.6645e-01, + 2DIAGNOSTIC, 4, -3.974499583060e-01, 1.797693134862e+308, 7.8805e+00, 6.0421e-01, + 2DIAGNOSTIC, 5, -3.975288076204e-01, 1.797693134862e+308, 8.6121e+00, 7.3162e-01, + 2DIAGNOSTIC, 6, -3.975796268210e-01, 1.797693134862e+308, 9.2284e+00, 6.1626e-01, + 2DIAGNOSTIC, 7, -3.975863211570e-01, 1.797693134862e+308, 9.9930e+00, 7.6463e-01, + 2DIAGNOSTIC, 8, -3.975871639346e-01, 1.797693134862e+308, 1.0703e+01, 7.0984e-01, + 2DIAGNOSTIC, 9, -3.975878033120e-01, 1.797693134862e+308, 1.1380e+01, 6.7709e-01, + 2DIAGNOSTIC, 10, -3.975882896210e-01, 5.624395433927e-05, 1.1984e+01, 6.0392e-01, + 2DIAGNOSTIC, 11, -3.975884114518e-01, 3.454290475327e-05, 1.3146e+01, 1.1621e+00, + 2DIAGNOSTIC, 12, -3.975884824718e-01, 2.228091698313e-05, 1.3747e+01, 6.0132e-01, + 2DIAGNOSTIC, 13, -3.975883578372e-01, 1.332146934235e-05, 1.4352e+01, 6.0492e-01, + 2DIAGNOSTIC, 14, -3.975882399922e-01, 5.808483041284e-06, 1.4959e+01, 6.0697e-01, + 2DIAGNOSTIC, 15, -3.975882796267e-01, 2.669345025047e-06, 1.5582e+01, 6.2243e-01, + 2DIAGNOSTIC, 16, -3.975882034739e-01, 2.131727416102e-06, 1.6278e+01, 6.9595e-01, + 2DIAGNOSTIC, 17, -3.975879551113e-01, 1.914884038050e-06, 1.6906e+01, 6.2816e-01, + 2DIAGNOSTIC, 18, -3.975878623523e-01, 1.747858935475e-06, 1.8912e+01, 2.0065e+00, + 2DIAGNOSTIC, 19, -3.975878623522e-01, 1.623893091801e-06, 2.0282e+01, 1.3702e+00, + 2DIAGNOSTIC, 20, -3.975878623522e-01, 1.534054508312e-06, 2.0969e+01, 6.8636e-01, + 2DIAGNOSTIC, 21, -3.975878623522e-01, 1.462029268387e-06, 2.1649e+01, 6.8023e-01, + 2DIAGNOSTIC, 22, -3.975878623522e-01, 1.404047454037e-06, 2.2496e+01, 8.4665e-01, + 2DIAGNOSTIC, 23, -3.975878623522e-01, 1.351324016859e-06, 2.3174e+01, 6.7867e-01, + 2DIAGNOSTIC, 24, -3.975878623522e-01, 1.302299311660e-06, 2.3844e+01, 6.7018e-01, + 2DIAGNOSTIC, 25, -3.975878623522e-01, 1.260446772920e-06, 2.4676e+01, 8.3123e-01, + 2DIAGNOSTIC, 26, -3.975878623522e-01, 1.221020533043e-06, 2.5363e+01, 6.8715e-01, + 2DIAGNOSTIC, 27, -3.975878623522e-01, 1.178249602253e-06, 2.6022e+01, 6.5915e-01, + 2DIAGNOSTIC, 28, -3.975878623522e-01, 1.136165669942e-06, 2.6731e+01, 7.0876e-01, + 2DIAGNOSTIC, 29, -3.975878623522e-01, 1.096984313893e-06, 2.7448e+01, 7.1771e-01, + 2DIAGNOSTIC, 30, -3.975878623522e-01, 1.060415256347e-06, 2.8145e+01, 6.9689e-01, + 2DIAGNOSTIC, 31, -3.975878623522e-01, 1.026205674784e-06, 2.8915e+01, 7.6923e-01, + Elapsed time (stage 1): 2.9311e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.976747697265e-01, 1.797693134862e+308, 2.5734e-01, 2.5734e-01, + 1DIAGNOSTIC, 2, -9.082126745858e-01, 1.797693134862e+308, 3.5138e-01, 9.4039e-02, + 1DIAGNOSTIC, 3, -9.162673569323e-01, 1.797693134862e+308, 4.4760e-01, 9.6225e-02, + 1DIAGNOSTIC, 4, -9.221759839188e-01, 1.797693134862e+308, 5.4459e-01, 9.6985e-02, + 1DIAGNOSTIC, 5, -9.266638600089e-01, 1.797693134862e+308, 6.4569e-01, 1.0111e-01, + 1DIAGNOSTIC, 6, -9.302238123789e-01, 1.797693134862e+308, 7.4190e-01, 9.6209e-02, + 1DIAGNOSTIC, 7, -9.327609644607e-01, 1.797693134862e+308, 8.4381e-01, 1.0190e-01, + 1DIAGNOSTIC, 8, -9.349555489273e-01, 1.797693134862e+308, 9.4160e-01, 9.7795e-02, + 1DIAGNOSTIC, 9, -9.368767747943e-01, 1.797693134862e+308, 1.0430e+00, 1.0138e-01, + 1DIAGNOSTIC, 10, -9.385621401546e-01, 2.603503301725e-03, 1.1417e+00, 9.8710e-02, + 1DIAGNOSTIC, 11, -9.401291236762e-01, 1.844846941605e-03, 1.2418e+00, 1.0012e-01, + 1DIAGNOSTIC, 12, -9.415793506647e-01, 1.351884205449e-03, 1.3416e+00, 9.9834e-02, + 1DIAGNOSTIC, 13, -9.429516372792e-01, 1.033571777694e-03, 1.4396e+00, 9.7975e-02, + 1DIAGNOSTIC, 14, -9.441937462936e-01, 8.220406064872e-04, 1.5431e+00, 1.0349e-01, + 1DIAGNOSTIC, 15, -9.453045342365e-01, 6.768405951788e-04, 1.6428e+00, 9.9668e-02, + 1DIAGNOSTIC, 16, -9.463793649743e-01, 5.756835208038e-04, 1.7426e+00, 9.9786e-02, + 1DIAGNOSTIC, 17, -9.473565484869e-01, 4.960168045854e-04, 1.8490e+00, 1.0642e-01, + 1DIAGNOSTIC, 18, -9.482918809826e-01, 4.319881633839e-04, 1.9488e+00, 9.9830e-02, + 1DIAGNOSTIC, 19, -9.491957705179e-01, 3.796512979667e-04, 2.0508e+00, 1.0198e-01, + 1DIAGNOSTIC, 20, -9.500299861829e-01, 3.353414203745e-04, 2.1479e+00, 9.7087e-02, + 1DIAGNOSTIC, 21, -9.509067820651e-01, 2.991710257357e-04, 2.2512e+00, 1.0328e-01, + 1DIAGNOSTIC, 22, -9.514591541838e-01, 2.657677060447e-04, 2.3477e+00, 9.6524e-02, + 1DIAGNOSTIC, 23, -9.523071591144e-01, 2.396164243441e-04, 2.4502e+00, 1.0248e-01, + 1DIAGNOSTIC, 24, -9.517182746048e-01, 2.012619346653e-04, 2.5593e+00, 1.0914e-01, + 1DIAGNOSTIC, 25, -9.524516027359e-01, 1.697345841250e-04, 2.6635e+00, 1.0418e-01, + 1DIAGNOSTIC, 26, -9.518790919560e-01, 1.302636059484e-04, 2.7628e+00, 9.9307e-02, + 1DIAGNOSTIC, 27, -9.525093601955e-01, 9.959068901035e-05, 2.8651e+00, 1.0232e-01, + 1DIAGNOSTIC, 28, -9.519633193618e-01, 6.575810820505e-05, 2.9641e+00, 9.9021e-02, + 1DIAGNOSTIC, 29, -9.526686486597e-01, 4.510160601972e-05, 3.0537e+00, 8.9594e-02, + 1DIAGNOSTIC, 30, -9.520842206949e-01, 2.390516474394e-05, 3.1485e+00, 9.4786e-02, + 1DIAGNOSTIC, 31, -9.527482684963e-01, 1.699774477702e-05, 3.2511e+00, 1.0262e-01, + 1DIAGNOSTIC, 32, -9.521903248148e-01, 8.582132770184e-06, 3.3482e+00, 9.7096e-02, + 1DIAGNOSTIC, 33, -9.528641842163e-01, 1.420143108601e-05, 3.4504e+00, 1.0221e-01, + 1DIAGNOSTIC, 34, -9.522857572391e-01, 7.514755233272e-06, 3.5536e+00, 1.0315e-01, + 1DIAGNOSTIC, 35, -9.528992287281e-01, 1.250013433033e-05, 3.6486e+00, 9.4981e-02, + 1DIAGNOSTIC, 36, -9.523612926430e-01, 6.523595067288e-06, 3.7446e+00, 9.6006e-02, + 1DIAGNOSTIC, 37, -9.530170092678e-01, 1.107698681160e-05, 3.8432e+00, 9.8649e-02, + 1DIAGNOSTIC, 38, -9.524350084047e-01, 5.164093004432e-06, 3.9429e+00, 9.9681e-02, + 1DIAGNOSTIC, 39, -9.529867692418e-01, 9.136800949841e-06, 4.0393e+00, 9.6409e-02, + 1DIAGNOSTIC, 40, -9.525166444814e-01, 3.927631877024e-06, 4.1336e+00, 9.4303e-02, + 1DIAGNOSTIC, 41, -9.531468783788e-01, 8.399228935047e-06, 4.2305e+00, 9.6922e-02, + 1DIAGNOSTIC, 42, -9.525625843641e-01, 3.470838406513e-06, 4.3353e+00, 1.0478e-01, + 1DIAGNOSTIC, 43, -9.531117285048e-01, 7.335137643023e-06, 4.4360e+00, 1.0069e-01, + 1DIAGNOSTIC, 44, -9.525567223286e-01, 2.427900742060e-06, 4.5385e+00, 1.0247e-01, + 1DIAGNOSTIC, 45, -9.531630745962e-01, 5.935775387055e-06, 4.6334e+00, 9.4898e-02, + 1DIAGNOSTIC, 46, -9.525830544753e-01, 1.227853232338e-06, 4.7318e+00, 9.8430e-02, + 1DIAGNOSTIC, 47, -9.531188115639e-01, 4.524911381327e-06, 4.8345e+00, 1.0274e-01, + 1DIAGNOSTIC, 48, -9.526592209477e-01, 6.114887417911e-07, 4.9340e+00, 9.9454e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.046037869852e-01, 1.797693134862e+308, 5.7924e+00, 8.5839e-01, + 1DIAGNOSTIC, 2, -9.079477219904e-01, 1.797693134862e+308, 6.4796e+00, 6.8721e-01, + 1DIAGNOSTIC, 3, -9.110033788923e-01, 1.797693134862e+308, 7.1394e+00, 6.5984e-01, + 1DIAGNOSTIC, 4, -9.135774512377e-01, 1.797693134862e+308, 7.8112e+00, 6.7175e-01, + 1DIAGNOSTIC, 5, -9.158039806127e-01, 1.797693134862e+308, 8.4775e+00, 6.6631e-01, + 1DIAGNOSTIC, 6, -9.178019978986e-01, 1.797693134862e+308, 9.1421e+00, 6.6464e-01, + 1DIAGNOSTIC, 7, -9.195521407971e-01, 1.797693134862e+308, 9.8201e+00, 6.7800e-01, + 1DIAGNOSTIC, 8, -9.211746241583e-01, 1.797693134862e+308, 1.0499e+01, 6.7876e-01, + 1DIAGNOSTIC, 9, -9.226086257043e-01, 1.797693134862e+308, 1.1173e+01, 6.7445e-01, + 1DIAGNOSTIC, 10, -9.239789769779e-01, 1.320376822013e-03, 1.1844e+01, 6.7040e-01, + 1DIAGNOSTIC, 11, -9.252650538973e-01, 1.068056484773e-03, 1.2521e+01, 6.7742e-01, + 1DIAGNOSTIC, 12, -9.264888013999e-01, 8.789888126528e-04, 1.3200e+01, 6.7877e-01, + 1DIAGNOSTIC, 13, -9.276572022804e-01, 7.394997894797e-04, 1.3873e+01, 6.7322e-01, + 1DIAGNOSTIC, 14, -9.287475800549e-01, 6.331506091236e-04, 1.4548e+01, 6.7456e-01, + 1DIAGNOSTIC, 15, -9.296815946225e-01, 5.478163104373e-04, 1.5241e+01, 6.9281e-01, + 1DIAGNOSTIC, 16, -9.304841469573e-01, 4.766357615273e-04, 1.5918e+01, 6.7779e-01, + 1DIAGNOSTIC, 17, -9.311820981284e-01, 4.141116440018e-04, 1.6593e+01, 6.7502e-01, + 1DIAGNOSTIC, 18, -9.318053203739e-01, 3.585453989279e-04, 1.7275e+01, 6.8151e-01, + 1DIAGNOSTIC, 19, -9.323493322680e-01, 3.074946516466e-04, 1.7946e+01, 6.7132e-01, + 1DIAGNOSTIC, 20, -9.328330869289e-01, 2.614008368269e-04, 1.8628e+01, 6.8202e-01, + 1DIAGNOSTIC, 21, -9.332616450654e-01, 2.203906801042e-04, 1.9308e+01, 6.8024e-01, + 1DIAGNOSTIC, 22, -9.336573068334e-01, 1.850905966873e-04, 1.9986e+01, 6.7765e-01, + 1DIAGNOSTIC, 23, -9.340125176519e-01, 1.558164937876e-04, 2.0666e+01, 6.8005e-01, + 1DIAGNOSTIC, 24, -9.343275158244e-01, 1.323127188847e-04, 2.1354e+01, 6.8768e-01, + 1DIAGNOSTIC, 25, -9.346226257560e-01, 1.133411494795e-04, 2.2023e+01, 6.6885e-01, + 1DIAGNOSTIC, 26, -9.348821386326e-01, 9.769976942001e-05, 2.2679e+01, 6.5652e-01, + 1DIAGNOSTIC, 27, -9.351171360893e-01, 8.461952027931e-05, 2.3350e+01, 6.7122e-01, + 1DIAGNOSTIC, 28, -9.353344191537e-01, 7.371615607925e-05, 2.4041e+01, 6.9013e-01, + 1DIAGNOSTIC, 29, -9.355438427666e-01, 6.459394550704e-05, 2.4723e+01, 6.8278e-01, + 1DIAGNOSTIC, 30, -9.357322730026e-01, 5.687010496958e-05, 2.5394e+01, 6.7057e-01, + 1DIAGNOSTIC, 31, -9.358958559983e-01, 5.014954745812e-05, 2.6076e+01, 6.8175e-01, + 1DIAGNOSTIC, 32, -9.360546338426e-01, 4.444995600988e-05, 2.6759e+01, 6.8359e-01, + 1DIAGNOSTIC, 33, -9.361847701251e-01, 3.942904614419e-05, 2.7431e+01, 6.7195e-01, + 1DIAGNOSTIC, 34, -9.363115594155e-01, 3.498491953648e-05, 2.8099e+01, 6.6779e-01, + 1DIAGNOSTIC, 35, -9.364252366864e-01, 3.109516017934e-05, 2.8782e+01, 6.8304e-01, + 1DIAGNOSTIC, 36, -9.365315818919e-01, 2.762839376729e-05, 2.9463e+01, 6.8125e-01, + 1DIAGNOSTIC, 37, -9.366216193179e-01, 2.446221041073e-05, 3.0143e+01, 6.7930e-01, + 1DIAGNOSTIC, 38, -9.367132601472e-01, 2.167469751907e-05, 3.0829e+01, 6.8681e-01, + 1DIAGNOSTIC, 39, -9.368154341835e-01, 1.946181802185e-05, 3.1509e+01, 6.7951e-01, + 1DIAGNOSTIC, 40, -9.368902704271e-01, 1.756737055370e-05, 3.2190e+01, 6.8130e-01, + 1DIAGNOSTIC, 41, -9.369585299733e-01, 1.587419998706e-05, 3.2874e+01, 6.8412e-01, + 1DIAGNOSTIC, 42, -9.370215463799e-01, 1.442159266565e-05, 3.3598e+01, 7.2394e-01, + 1DIAGNOSTIC, 43, -9.370797837534e-01, 1.305341297294e-05, 3.4267e+01, 6.6847e-01, + 1DIAGNOSTIC, 44, -9.371355273706e-01, 1.182110914828e-05, 3.4954e+01, 6.8703e-01, + 1DIAGNOSTIC, 45, -9.371808258114e-01, 1.064765220699e-05, 3.5638e+01, 6.8462e-01, + 1DIAGNOSTIC, 46, -9.372237643023e-01, 9.558943235372e-06, 3.6313e+01, 6.7474e-01, + 1DIAGNOSTIC, 47, -9.372619728190e-01, 8.492521571757e-06, 3.7018e+01, 7.0506e-01, + 1DIAGNOSTIC, 48, -9.372972067081e-01, 7.516358928632e-06, 3.7728e+01, 7.0972e-01, + 1DIAGNOSTIC, 49, -9.373277403947e-01, 6.742112180550e-06, 3.8445e+01, 7.1709e-01, + 1DIAGNOSTIC, 50, -9.373545158312e-01, 6.028685595537e-06, 3.9117e+01, 6.7209e-01, + 1DIAGNOSTIC, 51, -9.373862238363e-01, 5.418926587838e-06, 3.9789e+01, 6.7171e-01, + 1DIAGNOSTIC, 52, -9.374093168732e-01, 4.871204816133e-06, 4.0468e+01, 6.7897e-01, + 1DIAGNOSTIC, 53, -9.374302431090e-01, 4.385841932450e-06, 4.1137e+01, 6.6946e-01, + 1DIAGNOSTIC, 54, -9.374473138009e-01, 3.963083304831e-06, 4.1815e+01, 6.7744e-01, + 1DIAGNOSTIC, 55, -9.374726312492e-01, 3.619862109141e-06, 4.2491e+01, 6.7671e-01, + 1DIAGNOSTIC, 56, -9.374865238978e-01, 3.300985571667e-06, 4.3170e+01, 6.7825e-01, + 1DIAGNOSTIC, 57, -9.374981704256e-01, 2.994707316718e-06, 4.3841e+01, 6.7173e-01, + 1DIAGNOSTIC, 58, -9.375058500069e-01, 2.689355215538e-06, 4.4520e+01, 6.7854e-01, + 1DIAGNOSTIC, 59, -9.375128289797e-01, 2.381164543944e-06, 4.5195e+01, 6.7500e-01, + 1DIAGNOSTIC, 60, -9.375152999205e-01, 2.051321994729e-06, 4.5870e+01, 6.7540e-01, + 1DIAGNOSTIC, 61, -9.375207451095e-01, 1.770237619055e-06, 4.6540e+01, 6.7007e-01, + 1DIAGNOSTIC, 62, -9.375230626398e-01, 1.502047518660e-06, 4.7216e+01, 6.7599e-01, + 1DIAGNOSTIC, 63, -9.375236748197e-01, 1.251187109738e-06, 4.7887e+01, 6.7043e-01, + 1DIAGNOSTIC, 64, -9.375216498480e-01, 1.006289317772e-06, 4.8557e+01, 6.6997e-01, + 1DIAGNOSTIC, 65, -9.375165996614e-01, 8.146985818608e-07, 4.9240e+01, 6.8352e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.897857800124e-01, 1.797693134862e+308, 5.4921e+01, 5.6807e+00, + 1DIAGNOSTIC, 2, -8.931952740933e-01, 1.797693134862e+308, 6.0323e+01, 5.4018e+00, + 1DIAGNOSTIC, 3, -8.962494518705e-01, 1.797693134862e+308, 6.5714e+01, 5.3914e+00, + 1DIAGNOSTIC, 4, -8.989336002748e-01, 1.797693134862e+308, 7.1132e+01, 5.4175e+00, + 1DIAGNOSTIC, 5, -9.011925360450e-01, 1.797693134862e+308, 7.6533e+01, 5.4010e+00, + 1DIAGNOSTIC, 6, -9.031344287295e-01, 1.797693134862e+308, 8.1914e+01, 5.3811e+00, + 1DIAGNOSTIC, 7, -9.048444545279e-01, 1.797693134862e+308, 8.7328e+01, 5.4141e+00, + 1DIAGNOSTIC, 8, -9.063911965218e-01, 1.797693134862e+308, 9.2710e+01, 5.3821e+00, + 1DIAGNOSTIC, 9, -9.078081247803e-01, 1.797693134862e+308, 9.8118e+01, 5.4076e+00, + 1DIAGNOSTIC, 10, -9.091131074824e-01, 1.337205544652e-03, 1.0352e+02, 5.3994e+00, + 1DIAGNOSTIC, 11, -9.103468607978e-01, 1.072294042134e-03, 1.0893e+02, 5.4128e+00, + 1DIAGNOSTIC, 12, -9.113210783522e-01, 8.695593925359e-04, 1.1438e+02, 5.4521e+00, + 1DIAGNOSTIC, 13, -9.123947880176e-01, 7.187549514727e-04, 1.1981e+02, 5.4304e+00, + 1DIAGNOSTIC, 14, -9.133201797212e-01, 6.046300108615e-04, 1.2524e+02, 5.4228e+00, + 1DIAGNOSTIC, 15, -9.142312774594e-01, 5.164373165655e-04, 1.3072e+02, 5.4849e+00, + 1DIAGNOSTIC, 16, -9.151025139192e-01, 4.467395134083e-04, 1.3617e+02, 5.4546e+00, + 1DIAGNOSTIC, 17, -9.159472054892e-01, 3.909718600164e-04, 1.4164e+02, 5.4671e+00, + 1DIAGNOSTIC, 18, -9.167255522680e-01, 3.455156792361e-04, 1.4705e+02, 5.4037e+00, + 1DIAGNOSTIC, 19, -9.174472226350e-01, 3.078543929273e-04, 1.5249e+02, 5.4463e+00, + 1DIAGNOSTIC, 20, -9.181116606154e-01, 2.759825854216e-04, 1.5793e+02, 5.4422e+00, + 1DIAGNOSTIC, 21, -9.187293880310e-01, 2.489321298495e-04, 1.6340e+02, 5.4664e+00, + 1DIAGNOSTIC, 22, -9.193082055761e-01, 2.230216733160e-04, 1.6882e+02, 5.4208e+00, + 1DIAGNOSTIC, 23, -9.198432748105e-01, 2.002746311111e-04, 1.7426e+02, 5.4400e+00, + 1DIAGNOSTIC, 24, -9.203414756038e-01, 1.791070846941e-04, 1.7969e+02, 5.4323e+00, + 1DIAGNOSTIC, 25, -9.208086428334e-01, 1.599696556649e-04, 1.8518e+02, 5.4857e+00, + 1DIAGNOSTIC, 26, -9.212448506719e-01, 1.428934570685e-04, 1.9059e+02, 5.4151e+00, + 1DIAGNOSTIC, 27, -9.216542789926e-01, 1.280673531213e-04, 1.9605e+02, 5.4540e+00, + 1DIAGNOSTIC, 28, -9.220394180560e-01, 1.151441505878e-04, 2.0149e+02, 5.4446e+00, + 1DIAGNOSTIC, 29, -9.224003360898e-01, 1.038522046220e-04, 2.0692e+02, 5.4272e+00, + 1DIAGNOSTIC, 30, -9.227481344693e-01, 9.399339613257e-05, 2.1231e+02, 5.3932e+00, + 1DIAGNOSTIC, 31, -9.230708246824e-01, 8.531207047643e-05, 2.1778e+02, 5.4622e+00, + 1DIAGNOSTIC, 32, -9.233544388360e-01, 7.748105809004e-05, 2.2316e+02, 5.3874e+00, + 1DIAGNOSTIC, 33, -9.236036176075e-01, 7.018501637676e-05, 2.2859e+02, 5.4294e+00, + 1DIAGNOSTIC, 34, -9.238327890044e-01, 6.332979192431e-05, 2.3401e+02, 5.4132e+00, + 1DIAGNOSTIC, 35, -9.240388059987e-01, 5.684959583619e-05, 2.3947e+02, 5.4652e+00, + 1DIAGNOSTIC, 36, -9.242243905279e-01, 5.071610405093e-05, 2.4490e+02, 5.4342e+00, + 1DIAGNOSTIC, 37, -9.243985067206e-01, 4.502021806474e-05, 2.5037e+02, 5.4666e+00, + 1DIAGNOSTIC, 38, -9.245538946751e-01, 3.979095179390e-05, 2.5581e+02, 5.4358e+00, + 1DIAGNOSTIC, 39, -9.247066312676e-01, 3.516264261198e-05, 2.6130e+02, 5.4889e+00, + 1DIAGNOSTIC, 40, -9.248488645234e-01, 3.124854903952e-05, 2.6669e+02, 5.3978e+00, + 1DIAGNOSTIC, 41, -9.249871355651e-01, 2.807064027102e-05, 2.7212e+02, 5.4238e+00, + 1DIAGNOSTIC, 42, -9.251196998779e-01, 2.547954624722e-05, 2.7756e+02, 5.4394e+00, + 1DIAGNOSTIC, 43, -9.252436866903e-01, 2.330850537141e-05, 2.8307e+02, 5.5142e+00, + 1DIAGNOSTIC, 44, -9.253647375736e-01, 2.152062319115e-05, 2.8849e+02, 5.4145e+00, + 1DIAGNOSTIC, 45, -9.254856358253e-01, 2.005085771405e-05, 2.9392e+02, 5.4313e+00, + 1DIAGNOSTIC, 46, -9.256036523239e-01, 1.881561460240e-05, 2.9933e+02, 5.4149e+00, + 1DIAGNOSTIC, 47, -9.257226908197e-01, 1.781034094493e-05, 3.0482e+02, 5.4831e+00, + 1DIAGNOSTIC, 48, -9.258425346635e-01, 1.696231321333e-05, 3.1043e+02, 5.6139e+00, + 1DIAGNOSTIC, 49, -9.259655683516e-01, 1.631174656144e-05, 3.1590e+02, 5.4673e+00, + 1DIAGNOSTIC, 50, -9.260898034824e-01, 1.581705762240e-05, 3.2132e+02, 5.4218e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.946694587322e-01, 1.797693134862e+308, 3.6660e+02, 4.5278e+01, + 1DIAGNOSTIC, 2, -8.955366141633e-01, 1.797693134862e+308, 4.1087e+02, 4.4270e+01, + 1DIAGNOSTIC, 3, -8.966087132424e-01, 1.797693134862e+308, 4.5496e+02, 4.4095e+01, + 1DIAGNOSTIC, 4, -8.976974399307e-01, 1.797693134862e+308, 4.9908e+02, 4.4123e+01, + 1DIAGNOSTIC, 5, -8.988101251816e-01, 1.797693134862e+308, 5.4341e+02, 4.4326e+01, + 1DIAGNOSTIC, 6, -8.999626587051e-01, 1.797693134862e+308, 5.8860e+02, 4.5190e+01, + 1DIAGNOSTIC, 7, -9.011201140326e-01, 1.797693134862e+308, 6.3387e+02, 4.5269e+01, + 1DIAGNOSTIC, 8, -9.021841111657e-01, 1.797693134862e+308, 6.7867e+02, 4.4804e+01, + 1DIAGNOSTIC, 9, -9.031209471661e-01, 1.797693134862e+308, 7.2277e+02, 4.4101e+01, + 1DIAGNOSTIC, 10, -9.039732482573e-01, 6.867860852208e-04, 7.6775e+02, 4.4979e+01, + 1DIAGNOSTIC, 11, -9.047207388951e-01, 6.113763000119e-04, 8.1230e+02, 4.4553e+01, + 1DIAGNOSTIC, 12, -9.053068841017e-01, 5.316581384035e-04, 8.5677e+02, 4.4465e+01, + 1DIAGNOSTIC, 13, -9.059200290338e-01, 4.569510743802e-04, 9.0153e+02, 4.4759e+01, + 1DIAGNOSTIC, 14, -9.064064722308e-01, 3.867200736321e-04, 9.4713e+02, 4.5604e+01, + 1DIAGNOSTIC, 15, -9.068541294283e-01, 3.231963952349e-04, 9.9393e+02, 4.6796e+01, + 1DIAGNOSTIC, 16, -9.071833911571e-01, 2.670101416135e-04, 1.0412e+03, 4.7227e+01, + 1DIAGNOSTIC, 17, -9.075951001481e-01, 2.218489363130e-04, 1.0885e+03, 4.7333e+01, + 1DIAGNOSTIC, 18, -9.078812984351e-01, 1.847005048552e-04, 1.1352e+03, 4.6756e+01, + 1DIAGNOSTIC, 19, -9.082536243604e-01, 1.559623163552e-04, 1.1824e+03, 4.7138e+01, + 1DIAGNOSTIC, 20, -9.086169423545e-01, 1.346638863438e-04, 1.2302e+03, 4.7814e+01, + Elapsed time (stage 2): 1231 + + +Total elapsed time: 1285 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:09:49 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:09:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:09:52 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:09:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:00 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31516 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:04 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31564 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:04 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:07 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:07 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31613 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:07 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31622 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:07 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:11 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:14 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:14 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:15 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:16 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:18 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:18 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:19 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC004 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:32 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC004 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:44 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC004 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:44 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC004 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:45 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 357 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:46 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:46 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 397 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:48 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:48 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC004_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 72.583 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/logs/proc_func_18-03-2024-11394.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:54 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC004 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/QC/sub-PNC004_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC004* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 72.633 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC004_ses-03 +========================reprocessing without filter=================== +sub-PNC005_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC005 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC005 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC005 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC005 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:58 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:58 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz is 37.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:13:05 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:15:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:15:26 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.32 (mm) at sub-brick 208 +++ Max delta displ in automask = 0.29 (mm) at sub-brick 6 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:28:24 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:28:42 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz is 37.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:30:50 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:32:59 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz is 37.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:35:10 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.306 -1.935 2.974 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.1 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.382 -3.119 5.323 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.7 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:40:00 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:40:28 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x561600567a50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 55.1232, -119.779] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5616003de730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56160057e350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x56160056e600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [77.8036, 106.609, -151.036] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x561600570e40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x561600d7af50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x561600d79270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 55.1232, -119.779] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56160056d640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5616018a51c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x561600d78a00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [77.8036, 106.609, -151.036] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x561600574390) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56160209f300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.155825191592e-01, 1.797693134862e+308, 4.0687e-02, 4.0686e-02, + 2DIAGNOSTIC, 2, -6.174859775451e-01, 1.797693134862e+308, 4.1833e-02, 1.1461e-03, + 2DIAGNOSTIC, 3, -6.217386016679e-01, 1.797693134862e+308, 4.2922e-02, 1.0891e-03, + 2DIAGNOSTIC, 4, -6.364952145501e-01, 1.797693134862e+308, 4.4055e-02, 1.1330e-03, + 2DIAGNOSTIC, 5, -6.533021685051e-01, 1.797693134862e+308, 4.5192e-02, 1.1370e-03, + 2DIAGNOSTIC, 6, -6.668281213594e-01, 1.797693134862e+308, 4.6339e-02, 1.1468e-03, + 2DIAGNOSTIC, 7, -6.861752870633e-01, 1.797693134862e+308, 4.7884e-02, 1.5452e-03, + 2DIAGNOSTIC, 8, -6.971756907123e-01, 1.797693134862e+308, 4.9173e-02, 1.2891e-03, + 2DIAGNOSTIC, 9, -7.022522785306e-01, 1.797693134862e+308, 5.0644e-02, 1.4708e-03, + 2DIAGNOSTIC, 10, -7.139798157032e-01, 1.078702923800e-02, 5.2629e-02, 1.9851e-03, + 2DIAGNOSTIC, 11, -7.206004781832e-01, 9.831560364520e-03, 5.5116e-02, 2.4872e-03, + 2DIAGNOSTIC, 12, -7.215982833492e-01, 8.271239802713e-03, 5.6623e-02, 1.5070e-03, + 2DIAGNOSTIC, 13, -7.234838095457e-01, 6.421574095839e-03, 5.8352e-02, 1.7290e-03, + 2DIAGNOSTIC, 14, -7.243485379640e-01, 4.737227131676e-03, 5.9857e-02, 1.5049e-03, + 2DIAGNOSTIC, 15, -7.248440029566e-01, 3.336298840863e-03, 6.1617e-02, 1.7600e-03, + 2DIAGNOSTIC, 16, -7.254634792291e-01, 2.171046343969e-03, 6.3811e-02, 2.1932e-03, + 2DIAGNOSTIC, 17, -7.256718265064e-01, 1.424895549424e-03, 6.5569e-02, 1.7588e-03, + 2DIAGNOSTIC, 18, -7.263987637711e-01, 9.054080395242e-04, 6.7002e-02, 1.4329e-03, + 2DIAGNOSTIC, 19, -7.265914591321e-01, 4.680758818304e-04, 6.8730e-02, 1.7281e-03, + 2DIAGNOSTIC, 20, -7.268231191355e-01, 2.755083320761e-04, 7.0219e-02, 1.4889e-03, + 2DIAGNOSTIC, 21, -7.266975632161e-01, 2.033167941754e-04, 7.1712e-02, 1.4930e-03, + 2DIAGNOSTIC, 22, -7.274820243864e-01, 1.516162445861e-04, 7.3204e-02, 1.4920e-03, + 2DIAGNOSTIC, 23, -7.277002814441e-01, 1.271114367708e-04, 7.5376e-02, 2.1720e-03, + 2DIAGNOSTIC, 24, -7.283534051176e-01, 1.185460057876e-04, 7.6872e-02, 1.4958e-03, + 2DIAGNOSTIC, 25, -7.300012401890e-01, 1.343383499681e-04, 7.8595e-02, 1.7231e-03, + 2DIAGNOSTIC, 26, -7.437327513008e-01, 3.593768829714e-04, 8.1427e-02, 2.8322e-03, + 2DIAGNOSTIC, 27, -7.438485238256e-01, 5.321312326708e-04, 8.2861e-02, 1.4338e-03, + 2DIAGNOSTIC, 28, -7.440332074263e-01, 6.575353790567e-04, 8.4288e-02, 1.4269e-03, + 2DIAGNOSTIC, 29, -7.449045478594e-01, 7.295643914731e-04, 8.5749e-02, 1.4608e-03, + 2DIAGNOSTIC, 30, -7.464428281274e-01, 7.502857372493e-04, 8.7428e-02, 1.6789e-03, + 2DIAGNOSTIC, 31, -7.506762497949e-01, 7.482158671398e-04, 8.9126e-02, 1.6980e-03, + 2DIAGNOSTIC, 32, -7.548641543588e-01, 7.362475146029e-04, 9.0632e-02, 1.5061e-03, + 2DIAGNOSTIC, 33, -7.551169516657e-01, 6.632547287882e-04, 9.2122e-02, 1.4899e-03, + 2DIAGNOSTIC, 34, -7.619539804834e-01, 6.221862476909e-04, 9.3641e-02, 1.5190e-03, + 2DIAGNOSTIC, 35, -7.849192670725e-01, 7.973758538711e-04, 9.5389e-02, 1.7481e-03, + 2DIAGNOSTIC, 36, -9.067556917600e-01, 2.360703430679e-03, 9.7581e-02, 2.1920e-03, + 2DIAGNOSTIC, 37, -8.909678489613e-01, 3.398060397786e-03, 9.9725e-02, 2.1439e-03, + 2DIAGNOSTIC, 38, -8.935955501038e-01, 4.099258557309e-03, 1.0161e-01, 1.8861e-03, + 2DIAGNOSTIC, 39, -8.942340646393e-01, 4.399028822305e-03, 1.0307e-01, 1.4551e-03, + 2DIAGNOSTIC, 40, -8.959845820681e-01, 4.283501203790e-03, 1.0451e-01, 1.4398e-03, + 2DIAGNOSTIC, 41, -8.964222058425e-01, 3.792332791649e-03, 1.0596e-01, 1.4522e-03, + 2DIAGNOSTIC, 42, -8.967308992098e-01, 3.012281677611e-03, 1.0741e-01, 1.4479e-03, + 2DIAGNOSTIC, 43, -8.981268506600e-01, 2.022375671816e-03, 1.0884e-01, 1.4310e-03, + 2DIAGNOSTIC, 44, -8.988567706759e-01, 9.630438423188e-04, 1.1035e-01, 1.5180e-03, + 2DIAGNOSTIC, 45, -9.040536010511e-01, 7.279260473548e-05, 1.1203e-01, 1.6780e-03, + 2DIAGNOSTIC, 46, -9.070432787884e-01, 2.410457986502e-04, 1.1373e-01, 1.6999e-03, + 2DIAGNOSTIC, 47, -8.894965495830e-01, 1.129329402281e-04, 1.1659e-01, 2.8589e-03, + 2DIAGNOSTIC, 48, -8.925418136172e-01, 2.895738610762e-05, 1.1807e-01, 1.4791e-03, + 2DIAGNOSTIC, 49, -9.041900791837e-01, 3.670389856322e-05, 1.2019e-01, 2.1229e-03, + 2DIAGNOSTIC, 50, -9.117846073279e-01, 1.046680785887e-04, 1.2166e-01, 1.4670e-03, + 2DIAGNOSTIC, 51, -9.138069178279e-01, 1.772033089477e-04, 1.2333e-01, 1.6670e-03, + 2DIAGNOSTIC, 52, -9.149284465745e-01, 2.435286573700e-04, 1.2503e-01, 1.6980e-03, + 2DIAGNOSTIC, 53, -9.139847781552e-01, 2.880327072049e-04, 1.2673e-01, 1.7040e-03, + 2DIAGNOSTIC, 54, -9.180139582077e-01, 3.313672422241e-04, 1.2842e-01, 1.6921e-03, + 2DIAGNOSTIC, 55, -9.227398547676e-01, 4.030737485472e-04, 1.3014e-01, 1.7190e-03, + 2DIAGNOSTIC, 56, -9.236585542421e-01, 4.620886578000e-04, 1.3183e-01, 1.6870e-03, + 2DIAGNOSTIC, 57, -9.252614338810e-01, 3.752061832758e-04, 1.3336e-01, 1.5371e-03, + 2DIAGNOSTIC, 58, -9.267854535179e-01, 2.831770875187e-04, 1.3507e-01, 1.7049e-03, + 2DIAGNOSTIC, 59, -9.518599726642e-01, 3.889099076478e-04, 1.3676e-01, 1.6921e-03, + 2DIAGNOSTIC, 60, -9.688521752239e-01, 5.943251171210e-04, 1.3828e-01, 1.5180e-03, + 2DIAGNOSTIC, 61, -9.804517332732e-01, 8.128383841732e-04, 1.3999e-01, 1.7090e-03, + 2DIAGNOSTIC, 62, -1.026626515243e+00, 1.216190120003e-03, 1.4170e-01, 1.7061e-03, + 2DIAGNOSTIC, 63, -1.040331828826e+00, 1.551689148440e-03, 1.4316e-01, 1.4620e-03, + 2DIAGNOSTIC, 64, -1.045870567095e+00, 1.775983853656e-03, 1.4558e-01, 2.4180e-03, + 2DIAGNOSTIC, 65, -1.052710365336e+00, 1.884942902618e-03, 1.4726e-01, 1.6809e-03, + 2DIAGNOSTIC, 66, -1.053508848306e+00, 1.818167861381e-03, 1.4870e-01, 1.4460e-03, + 2DIAGNOSTIC, 67, -1.058332529727e+00, 1.611637218254e-03, 1.5038e-01, 1.6761e-03, + 2DIAGNOSTIC, 68, -1.063381631285e+00, 1.287580486647e-03, 1.5186e-01, 1.4849e-03, + 2DIAGNOSTIC, 69, -1.090504031839e+00, 1.111778762253e-03, 1.5401e-01, 2.1501e-03, + 2DIAGNOSTIC, 70, -1.098621877718e+00, 9.565956296047e-04, 1.5545e-01, 1.4360e-03, + 2DIAGNOSTIC, 71, -1.099262284631e+00, 7.693874800862e-04, 1.5690e-01, 1.4532e-03, + 2DIAGNOSTIC, 72, -1.100990127315e+00, 7.411252701312e-04, 1.5836e-01, 1.4589e-03, + 2DIAGNOSTIC, 73, -1.103912714486e+00, 7.185922583081e-04, 1.6003e-01, 1.6642e-03, + 2DIAGNOSTIC, 74, -1.114556250852e+00, 6.980552680618e-04, 1.6172e-01, 1.6971e-03, + 2DIAGNOSTIC, 75, -1.116449464165e+00, 6.484414366942e-04, 1.6409e-01, 2.3689e-03, + 2DIAGNOSTIC, 76, -1.116922781614e+00, 5.457304153739e-04, 1.6960e-01, 5.5070e-03, + 2DIAGNOSTIC, 77, -1.116922497323e+00, 4.167723426490e-04, 1.7105e-01, 1.4501e-03, + 2DIAGNOSTIC, 78, -1.116922616582e+00, 2.703411148189e-04, 1.7249e-01, 1.4451e-03, + 2DIAGNOSTIC, 79, -1.116922818325e+00, 2.139896235573e-04, 1.7395e-01, 1.4520e-03, + 2DIAGNOSTIC, 80, -1.116923159439e+00, 1.720474603834e-04, 1.7542e-01, 1.4789e-03, + 2DIAGNOSTIC, 81, -1.116923736166e+00, 1.180842062505e-04, 1.7685e-01, 1.4241e-03, + 2DIAGNOSTIC, 82, -1.116924711143e+00, 6.163084676695e-05, 1.7828e-01, 1.4329e-03, + 2DIAGNOSTIC, 83, -1.116926359075e+00, 1.137035743880e-05, 1.7968e-01, 1.3971e-03, + 2DIAGNOSTIC, 84, -1.116929143594e+00, 2.346230038610e-06, 1.8115e-01, 1.4749e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.018837884138e-01, 1.797693134862e+308, 2.2674e-01, 4.5591e-02, + 2DIAGNOSTIC, 2, -7.019436811734e-01, 1.797693134862e+308, 2.2933e-01, 2.5859e-03, + 2DIAGNOSTIC, 3, -7.034566325784e-01, 1.797693134862e+308, 2.3179e-01, 2.4600e-03, + 2DIAGNOSTIC, 4, -7.055057516008e-01, 1.797693134862e+308, 2.3408e-01, 2.2950e-03, + 2DIAGNOSTIC, 5, -7.096187402805e-01, 1.797693134862e+308, 2.3627e-01, 2.1861e-03, + 2DIAGNOSTIC, 6, -7.176609804979e-01, 1.797693134862e+308, 2.3847e-01, 2.1949e-03, + 2DIAGNOSTIC, 7, -7.218730775263e-01, 1.797693134862e+308, 2.4116e-01, 2.6951e-03, + 2DIAGNOSTIC, 8, -7.240399639800e-01, 1.797693134862e+308, 2.4353e-01, 2.3718e-03, + 2DIAGNOSTIC, 9, -7.258099046138e-01, 1.797693134862e+308, 2.4566e-01, 2.1310e-03, + 2DIAGNOSTIC, 10, -7.367432571622e-01, 3.149229820030e-03, 2.4834e-01, 2.6741e-03, + 2DIAGNOSTIC, 11, -7.418317105134e-01, 3.268116770148e-03, 2.5089e-01, 2.5570e-03, + 2DIAGNOSTIC, 12, -7.427456756111e-01, 3.104853466803e-03, 2.5344e-01, 2.5439e-03, + 2DIAGNOSTIC, 13, -7.432558103931e-01, 2.757609983404e-03, 2.5568e-01, 2.2459e-03, + 2DIAGNOSTIC, 14, -7.439833802662e-01, 2.290839986856e-03, 2.5800e-01, 2.3129e-03, + 2DIAGNOSTIC, 15, -7.463801282227e-01, 1.840089027678e-03, 2.6154e-01, 3.5439e-03, + 2DIAGNOSTIC, 16, -7.466470244466e-01, 1.476313493011e-03, 2.6437e-01, 2.8300e-03, + 2DIAGNOSTIC, 17, -7.468403593229e-01, 1.125359866753e-03, 2.6674e-01, 2.3720e-03, + 2DIAGNOSTIC, 18, -7.474418826782e-01, 7.748004452501e-04, 2.6917e-01, 2.4252e-03, + 2DIAGNOSTIC, 19, -7.492438588106e-01, 4.581829013866e-04, 2.7224e-01, 3.0711e-03, + 2DIAGNOSTIC, 20, -7.495739972664e-01, 3.467260880783e-04, 2.7491e-01, 2.6710e-03, + 2DIAGNOSTIC, 21, -7.498393077489e-01, 3.131176457365e-04, 2.7722e-01, 2.3129e-03, + 2DIAGNOSTIC, 22, -7.507287469807e-01, 2.863138445195e-04, 2.8012e-01, 2.9011e-03, + 2DIAGNOSTIC, 23, -7.511941781293e-01, 2.513440603275e-04, 2.8268e-01, 2.5561e-03, + 2DIAGNOSTIC, 24, -7.513801740878e-01, 2.091704559959e-04, 2.8525e-01, 2.5671e-03, + 2DIAGNOSTIC, 25, -7.520815351352e-01, 1.989924522368e-04, 2.8808e-01, 2.8281e-03, + 2DIAGNOSTIC, 26, -7.528896645592e-01, 1.871911841704e-04, 2.9056e-01, 2.4800e-03, + 2DIAGNOSTIC, 27, -7.529599214921e-01, 1.622767656398e-04, 2.9272e-01, 2.1660e-03, + 2DIAGNOSTIC, 28, -7.529917260452e-01, 1.322330053853e-04, 2.9516e-01, 2.4381e-03, + 2DIAGNOSTIC, 29, -7.531898406272e-01, 1.187153362462e-04, 2.9793e-01, 2.7671e-03, + 2DIAGNOSTIC, 30, -7.533140539474e-01, 1.007266164927e-04, 3.0011e-01, 2.1839e-03, + 2DIAGNOSTIC, 31, -7.533331187997e-01, 7.760610019965e-05, 3.0255e-01, 2.4369e-03, + 2DIAGNOSTIC, 32, -7.533650509669e-01, 5.979163615109e-05, 3.0473e-01, 2.1832e-03, + 2DIAGNOSTIC, 33, -7.534024528508e-01, 4.355367452465e-05, 3.0696e-01, 2.2268e-03, + 2DIAGNOSTIC, 34, -7.535206659723e-01, 2.753555994724e-05, 3.0948e-01, 2.5251e-03, + 2DIAGNOSTIC, 35, -7.535599008040e-01, 1.775602567132e-05, 3.1259e-01, 3.1030e-03, + 2DIAGNOSTIC, 36, -7.535704383960e-01, 1.567840393971e-05, 3.1475e-01, 2.1670e-03, + 2DIAGNOSTIC, 37, -7.535900776318e-01, 1.329190725234e-05, 3.1694e-01, 2.1830e-03, + 2DIAGNOSTIC, 38, -7.536915400323e-01, 1.114716245477e-05, 3.1941e-01, 2.4729e-03, + 2DIAGNOSTIC, 39, -7.537143686977e-01, 1.023097867446e-05, 3.2161e-01, 2.1970e-03, + 2DIAGNOSTIC, 40, -7.539262477861e-01, 1.168701981055e-05, 3.2504e-01, 3.4349e-03, + 2DIAGNOSTIC, 41, -7.539171755526e-01, 1.209788218346e-05, 3.2728e-01, 2.2380e-03, + 2DIAGNOSTIC, 42, -7.538475025725e-01, 1.109652784149e-05, 3.2954e-01, 2.2600e-03, + 2DIAGNOSTIC, 43, -7.538677104082e-01, 9.675435515506e-06, 3.3177e-01, 2.2340e-03, + 2DIAGNOSTIC, 44, -7.540795762524e-01, 1.030463447423e-05, 3.3503e-01, 3.2532e-03, + 2DIAGNOSTIC, 45, -7.540861233372e-01, 1.030320235119e-05, 3.3766e-01, 2.6381e-03, + 2DIAGNOSTIC, 46, -7.540900501285e-01, 9.532936062658e-06, 3.4006e-01, 2.3999e-03, + 2DIAGNOSTIC, 47, -7.540258300002e-01, 7.631847968835e-06, 3.4242e-01, 2.3530e-03, + 2DIAGNOSTIC, 48, -7.540382286336e-01, 6.075469261114e-06, 3.4471e-01, 2.2919e-03, + 2DIAGNOSTIC, 49, -7.540561092331e-01, 4.289262236560e-06, 3.4692e-01, 2.2080e-03, + 2DIAGNOSTIC, 50, -7.541666708307e-01, 4.670994528520e-06, 3.4946e-01, 2.5461e-03, + 2DIAGNOSTIC, 51, -7.546582187774e-01, 8.287163685963e-06, 3.5706e-01, 7.6010e-03, + 2DIAGNOSTIC, 52, -7.546582186476e-01, 1.044815449174e-05, 3.6458e-01, 7.5130e-03, + 2DIAGNOSTIC, 53, -7.546582186476e-01, 1.174168800948e-05, 3.6706e-01, 2.4850e-03, + 2DIAGNOSTIC, 54, -7.546582186476e-01, 1.345797293308e-05, 3.7026e-01, 3.2010e-03, + 2DIAGNOSTIC, 55, -7.546582186476e-01, 1.389060726475e-05, 3.7366e-01, 3.4010e-03, + 2DIAGNOSTIC, 56, -7.546582186476e-01, 1.301272580768e-05, 3.7618e-01, 2.5179e-03, + 2DIAGNOSTIC, 57, -7.546582186476e-01, 1.054022115795e-05, 3.7870e-01, 2.5170e-03, + 2DIAGNOSTIC, 58, -7.546582186476e-01, 7.334908555402e-06, 3.8094e-01, 2.2409e-03, + 2DIAGNOSTIC, 59, -7.546582186476e-01, 3.721089170655e-06, 3.8348e-01, 2.5449e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.041018259422e-01, 1.797693134862e+308, 4.5216e-01, 6.8676e-02, + 2DIAGNOSTIC, 2, -6.048451641558e-01, 1.797693134862e+308, 4.6414e-01, 1.1980e-02, + 2DIAGNOSTIC, 3, -6.056926658468e-01, 1.797693134862e+308, 4.7560e-01, 1.1462e-02, + 2DIAGNOSTIC, 4, -6.063217980402e-01, 1.797693134862e+308, 4.8723e-01, 1.1622e-02, + 2DIAGNOSTIC, 5, -6.067550234934e-01, 1.797693134862e+308, 4.9868e-01, 1.1451e-02, + 2DIAGNOSTIC, 6, -6.072385617829e-01, 1.797693134862e+308, 5.1006e-01, 1.1387e-02, + 2DIAGNOSTIC, 7, -6.080007332589e-01, 1.797693134862e+308, 5.2303e-01, 1.2970e-02, + 2DIAGNOSTIC, 8, -6.101188089952e-01, 1.797693134862e+308, 5.3931e-01, 1.6280e-02, + 2DIAGNOSTIC, 9, -6.105625051339e-01, 1.797693134862e+308, 5.5223e-01, 1.2919e-02, + 2DIAGNOSTIC, 10, -6.106834515161e-01, 7.306456934497e-04, 5.6395e-01, 1.1719e-02, + 2DIAGNOSTIC, 11, -6.107911698354e-01, 6.397386350414e-04, 5.7638e-01, 1.2426e-02, + 2DIAGNOSTIC, 12, -6.109372772788e-01, 5.405724426174e-04, 5.8796e-01, 1.1580e-02, + 2DIAGNOSTIC, 13, -6.112056155008e-01, 4.466155650610e-04, 6.0400e-01, 1.6039e-02, + 2DIAGNOSTIC, 14, -6.112524140191e-01, 3.478887163330e-04, 6.1709e-01, 1.3096e-02, + 2DIAGNOSTIC, 15, -6.113203520502e-01, 2.473736704444e-04, 6.3232e-01, 1.5226e-02, + 2DIAGNOSTIC, 16, -6.115803259539e-01, 1.590033359466e-04, 6.4557e-01, 1.3255e-02, + 2DIAGNOSTIC, 17, -6.115985843100e-01, 8.631351653809e-05, 6.5767e-01, 1.2096e-02, + 2DIAGNOSTIC, 18, -6.116753248707e-01, 7.053892583559e-05, 6.7025e-01, 1.2583e-02, + 2DIAGNOSTIC, 19, -6.118290476211e-01, 6.473704014019e-05, 6.8368e-01, 1.3430e-02, + 2DIAGNOSTIC, 20, -6.118557822141e-01, 5.704632731339e-05, 6.9868e-01, 1.5001e-02, + 2DIAGNOSTIC, 21, -6.119097779237e-01, 4.845977218979e-05, 7.1030e-01, 1.1618e-02, + 2DIAGNOSTIC, 22, -6.119299164796e-01, 3.966374475641e-05, 7.2183e-01, 1.1527e-02, + 2DIAGNOSTIC, 23, -6.120827454711e-01, 3.664173881821e-05, 7.3821e-01, 1.6386e-02, + 2DIAGNOSTIC, 24, -6.121248727037e-01, 3.220284941008e-05, 7.5151e-01, 1.3291e-02, + 2DIAGNOSTIC, 25, -6.121460648922e-01, 2.676641388589e-05, 7.6280e-01, 1.1298e-02, + 2DIAGNOSTIC, 26, -6.121703179436e-01, 2.452115194690e-05, 7.7451e-01, 1.1710e-02, + 2DIAGNOSTIC, 27, -6.122585895603e-01, 2.207330151460e-05, 7.8600e-01, 1.1491e-02, + 2DIAGNOSTIC, 28, -6.125166781726e-01, 2.326845911049e-05, 8.0486e-01, 1.8852e-02, + 2DIAGNOSTIC, 29, -6.125167161205e-01, 2.464692686856e-05, 8.1953e-01, 1.4677e-02, + 2DIAGNOSTIC, 30, -6.125167340954e-01, 2.420184520656e-05, 8.3547e-01, 1.5932e-02, + 2DIAGNOSTIC, 31, -6.125167347737e-01, 2.248675602631e-05, 8.4707e-01, 1.1602e-02, + 2DIAGNOSTIC, 32, -6.125167348614e-01, 1.905070329587e-05, 8.5945e-01, 1.2379e-02, + 2DIAGNOSTIC, 33, -6.125167348921e-01, 1.619324547943e-05, 8.7043e-01, 1.0986e-02, + 2DIAGNOSTIC, 34, -6.125167349038e-01, 1.263780057525e-05, 8.8010e-01, 9.6681e-03, + 2DIAGNOSTIC, 35, -6.125167349760e-01, 8.517250843762e-06, 8.8985e-01, 9.7458e-03, + 2DIAGNOSTIC, 36, -6.125167351044e-01, 4.224109766578e-06, 8.9946e-01, 9.6090e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.198075882368e-01, 1.797693134862e+308, 1.0682e+00, 1.6874e-01, + Elapsed time (stage 0): 1.0972e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -1.050074121554e+00, 1.797693134862e+308, 3.7121e-02, 3.7120e-02, + 2DIAGNOSTIC, 2, -1.052130515822e+00, 1.797693134862e+308, 3.8212e-02, 1.0910e-03, + 2DIAGNOSTIC, 3, -1.054450238724e+00, 1.797693134862e+308, 3.9328e-02, 1.1160e-03, + 2DIAGNOSTIC, 4, -1.059873943988e+00, 1.797693134862e+308, 4.0490e-02, 1.1621e-03, + 2DIAGNOSTIC, 5, -1.066284551592e+00, 1.797693134862e+308, 4.1704e-02, 1.2140e-03, + 2DIAGNOSTIC, 6, -1.077099354543e+00, 1.797693134862e+308, 4.2921e-02, 1.2171e-03, + 2DIAGNOSTIC, 7, -1.108711305712e+00, 1.797693134862e+308, 4.4343e-02, 1.4222e-03, + 2DIAGNOSTIC, 8, -1.146347062611e+00, 1.797693134862e+308, 4.6157e-02, 1.8139e-03, + 2DIAGNOSTIC, 9, -1.149425856958e+00, 1.797693134862e+308, 4.7561e-02, 1.4038e-03, + 2DIAGNOSTIC, 10, -1.150375102173e+00, 7.148551861500e-03, 4.9141e-02, 1.5800e-03, + 2DIAGNOSTIC, 11, -1.157155925880e+00, 6.931645514679e-03, 5.0727e-02, 1.5860e-03, + 2DIAGNOSTIC, 12, -1.157139317537e+00, 6.162078477539e-03, 5.2212e-02, 1.4851e-03, + 2DIAGNOSTIC, 13, -1.160587533647e+00, 5.063780117658e-03, 5.3772e-02, 1.5600e-03, + 2DIAGNOSTIC, 14, -1.162654112201e+00, 3.812759388348e-03, 5.6225e-02, 2.4531e-03, + 2DIAGNOSTIC, 15, -1.161294745932e+00, 2.485515829075e-03, 5.7712e-02, 1.4870e-03, + 2DIAGNOSTIC, 16, -1.162009831619e+00, 1.280509899930e-03, 5.8999e-02, 1.2870e-03, + 2DIAGNOSTIC, 17, -1.161089569522e+00, 5.474601961999e-04, 6.0314e-02, 1.3151e-03, + 2DIAGNOSTIC, 18, -1.162165738062e+00, 3.928337023458e-04, 6.1834e-02, 1.5199e-03, + 2DIAGNOSTIC, 19, -1.162862120996e+00, 2.688391047570e-04, 6.4214e-02, 2.3799e-03, + 2DIAGNOSTIC, 20, -1.155416016902e+00, 4.904659996714e-05, 6.5811e-02, 1.5969e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.991083416077e-01, 1.797693134862e+308, 1.0795e-01, 4.2138e-02, + 2DIAGNOSTIC, 2, -8.010962835286e-01, 1.797693134862e+308, 1.1040e-01, 2.4500e-03, + 2DIAGNOSTIC, 3, -8.053418708427e-01, 1.797693134862e+308, 1.1286e-01, 2.4641e-03, + 2DIAGNOSTIC, 4, -8.111533500527e-01, 1.797693134862e+308, 1.1525e-01, 2.3839e-03, + 2DIAGNOSTIC, 5, -8.187103380365e-01, 1.797693134862e+308, 1.1745e-01, 2.2070e-03, + 2DIAGNOSTIC, 6, -8.278928311537e-01, 1.797693134862e+308, 1.1959e-01, 2.1319e-03, + 2DIAGNOSTIC, 7, -8.404049162268e-01, 1.797693134862e+308, 1.2177e-01, 2.1880e-03, + 2DIAGNOSTIC, 8, -8.539196572822e-01, 1.797693134862e+308, 1.2432e-01, 2.5420e-03, + 2DIAGNOSTIC, 9, -8.643605635660e-01, 1.797693134862e+308, 1.2721e-01, 2.8980e-03, + 2DIAGNOSTIC, 10, -8.676287633523e-01, 5.936854638549e-03, 1.2969e-01, 2.4729e-03, + 2DIAGNOSTIC, 11, -8.708109580530e-01, 5.587298195234e-03, 1.3218e-01, 2.4979e-03, + 2DIAGNOSTIC, 12, -8.731504547903e-01, 4.918065197820e-03, 1.3561e-01, 3.4282e-03, + 2DIAGNOSTIC, 13, -8.738394421044e-01, 4.036400942690e-03, 1.3802e-01, 2.4111e-03, + 2DIAGNOSTIC, 14, -8.746257665551e-01, 3.077229417943e-03, 1.4046e-01, 2.4371e-03, + 2DIAGNOSTIC, 15, -8.750160059585e-01, 2.149602717361e-03, 1.4417e-01, 3.7041e-03, + 2DIAGNOSTIC, 16, -8.755656312521e-01, 1.347912773557e-03, 1.4696e-01, 2.7940e-03, + 2DIAGNOSTIC, 17, -8.764810004776e-01, 7.796863163092e-04, 1.5100e-01, 4.0400e-03, + 2DIAGNOSTIC, 18, -8.764824012320e-01, 4.516710748494e-04, 1.5377e-01, 2.7752e-03, + 2DIAGNOSTIC, 19, -8.764047138200e-01, 2.995997949423e-04, 1.5639e-01, 2.6171e-03, + 2DIAGNOSTIC, 20, -8.765095791266e-01, 1.910263430269e-04, 1.5888e-01, 2.4889e-03, + 2DIAGNOSTIC, 21, -8.768038805343e-01, 1.295919656065e-04, 1.6159e-01, 2.7089e-03, + 2DIAGNOSTIC, 22, -8.770300824865e-01, 1.003016903447e-04, 1.6420e-01, 2.6138e-03, + 2DIAGNOSTIC, 23, -8.770062965148e-01, 7.380868782489e-05, 1.6687e-01, 2.6670e-03, + 2DIAGNOSTIC, 24, -8.769777063111e-01, 5.354968168760e-05, 1.6975e-01, 2.8832e-03, + 2DIAGNOSTIC, 25, -8.770822367986e-01, 3.657597866415e-05, 1.7230e-01, 2.5458e-03, + 2DIAGNOSTIC, 26, -8.773295854563e-01, 2.730240309973e-05, 1.7486e-01, 2.5561e-03, + 2DIAGNOSTIC, 27, -8.779123579723e-01, 3.452096479999e-05, 1.7733e-01, 2.4791e-03, + 2DIAGNOSTIC, 28, -8.793112401030e-01, 5.456450579525e-05, 1.8013e-01, 2.7981e-03, + 2DIAGNOSTIC, 29, -8.799824539868e-01, 7.463743993311e-05, 1.8329e-01, 3.1600e-03, + 2DIAGNOSTIC, 30, -8.813024204234e-01, 1.020582977166e-04, 1.8616e-01, 2.8701e-03, + 2DIAGNOSTIC, 31, -8.824134199204e-01, 1.328486351340e-04, 1.8870e-01, 2.5370e-03, + 2DIAGNOSTIC, 32, -8.826152967391e-01, 1.534040056894e-04, 1.9185e-01, 3.1481e-03, + 2DIAGNOSTIC, 33, -8.828732136489e-01, 1.606462329247e-04, 1.9437e-01, 2.5241e-03, + 2DIAGNOSTIC, 34, -8.829835677249e-01, 1.531071253238e-04, 1.9817e-01, 3.7940e-03, + 2DIAGNOSTIC, 35, -8.829927336380e-01, 1.326011916176e-04, 2.0072e-01, 2.5561e-03, + 2DIAGNOSTIC, 36, -8.831589877779e-01, 1.044483011979e-04, 2.0340e-01, 2.6789e-03, + 2DIAGNOSTIC, 37, -8.833293774937e-01, 7.449504690909e-05, 2.0606e-01, 2.6610e-03, + 2DIAGNOSTIC, 38, -8.837374208008e-01, 5.481676062109e-05, 2.0884e-01, 2.7819e-03, + 2DIAGNOSTIC, 39, -8.845572650474e-01, 4.331647770375e-05, 2.1171e-01, 2.8670e-03, + 2DIAGNOSTIC, 40, -8.849372555470e-01, 4.194996070739e-05, 2.1438e-01, 2.6700e-03, + 2DIAGNOSTIC, 41, -8.850613601773e-01, 4.661558614948e-05, 2.1710e-01, 2.7199e-03, + 2DIAGNOSTIC, 42, -8.855600509212e-01, 5.217363469091e-05, 2.1987e-01, 2.7728e-03, + 2DIAGNOSTIC, 43, -8.856977572633e-01, 5.543940082305e-05, 2.2232e-01, 2.4419e-03, + 2DIAGNOSTIC, 44, -8.865258980972e-01, 6.024973199632e-05, 2.2543e-01, 3.1159e-03, + 2DIAGNOSTIC, 45, -8.873382029114e-01, 6.498012769540e-05, 2.2797e-01, 2.5430e-03, + 2DIAGNOSTIC, 46, -8.880058271119e-01, 6.926114801486e-05, 2.3147e-01, 3.4990e-03, + 2DIAGNOSTIC, 47, -8.884742187489e-01, 7.123268214470e-05, 2.3419e-01, 2.7158e-03, + 2DIAGNOSTIC, 48, -8.889494305622e-01, 7.226790912465e-05, 2.3794e-01, 3.7489e-03, + 2DIAGNOSTIC, 49, -8.890311227474e-01, 7.230669251114e-05, 2.4072e-01, 2.7862e-03, + 2DIAGNOSTIC, 50, -8.891929008391e-01, 6.899286028911e-05, 2.4315e-01, 2.4240e-03, + 2DIAGNOSTIC, 51, -8.892532121037e-01, 6.036939954169e-05, 2.4584e-01, 2.6948e-03, + 2DIAGNOSTIC, 52, -8.893049074068e-01, 4.986322613548e-05, 2.4824e-01, 2.3971e-03, + 2DIAGNOSTIC, 53, -8.893206252881e-01, 3.591258779522e-05, 2.5126e-01, 3.0150e-03, + 2DIAGNOSTIC, 54, -8.893763541845e-01, 2.437476919071e-05, 2.5396e-01, 2.7089e-03, + 2DIAGNOSTIC, 55, -8.893996087941e-01, 1.587582348513e-05, 2.5674e-01, 2.7750e-03, + 2DIAGNOSTIC, 56, -8.893571890331e-01, 9.808682843605e-06, 2.5954e-01, 2.8009e-03, + 2DIAGNOSTIC, 57, -8.893322688630e-01, 5.555089609331e-06, 2.6194e-01, 2.4049e-03, + 2DIAGNOSTIC, 58, -8.893096477033e-01, 3.514576154003e-06, 2.6438e-01, 2.4350e-03, + 2DIAGNOSTIC, 59, -8.893550950699e-01, 1.936732367935e-06, 2.6679e-01, 2.4071e-03, + 2DIAGNOSTIC, 60, -8.894367875537e-01, 1.581283525755e-06, 2.6921e-01, 2.4219e-03, + 2DIAGNOSTIC, 61, -8.894612242778e-01, 1.579623343607e-06, 2.7235e-01, 3.1462e-03, + 2DIAGNOSTIC, 62, -8.894958057500e-01, 1.941529136823e-06, 2.7552e-01, 3.1650e-03, + 2DIAGNOSTIC, 63, -8.894696896096e-01, 2.095986332610e-06, 2.7830e-01, 2.7812e-03, + 2DIAGNOSTIC, 64, -8.894716721516e-01, 2.381083761417e-06, 2.8076e-01, 2.4550e-03, + 2DIAGNOSTIC, 65, -8.894802857508e-01, 2.631431030513e-06, 2.8317e-01, 2.4111e-03, + 2DIAGNOSTIC, 66, -8.894856580244e-01, 2.484703213460e-06, 2.8560e-01, 2.4350e-03, + 2DIAGNOSTIC, 67, -8.894908010997e-01, 2.063795312437e-06, 2.8802e-01, 2.4199e-03, + 2DIAGNOSTIC, 68, -8.894975450331e-01, 1.429406620471e-06, 2.9081e-01, 2.7909e-03, + 2DIAGNOSTIC, 69, -8.895305894205e-01, 1.083882851666e-06, 2.9582e-01, 5.0068e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.462751037982e-01, 1.797693134862e+308, 3.6128e-01, 6.5462e-02, + 2DIAGNOSTIC, 2, -6.467460433182e-01, 1.797693134862e+308, 3.7293e-01, 1.1647e-02, + 2DIAGNOSTIC, 3, -6.474818011337e-01, 1.797693134862e+308, 3.8477e-01, 1.1839e-02, + 2DIAGNOSTIC, 4, -6.489129019728e-01, 1.797693134862e+308, 3.9749e-01, 1.2725e-02, + 2DIAGNOSTIC, 5, -6.506970756948e-01, 1.797693134862e+308, 4.1108e-01, 1.3591e-02, + 2DIAGNOSTIC, 6, -6.521528183530e-01, 1.797693134862e+308, 4.2458e-01, 1.3494e-02, + 2DIAGNOSTIC, 7, -6.528298379453e-01, 1.797693134862e+308, 4.4367e-01, 1.9094e-02, + 2DIAGNOSTIC, 8, -6.528622330718e-01, 1.797693134862e+308, 4.5540e-01, 1.1731e-02, + 2DIAGNOSTIC, 9, -6.529859067787e-01, 1.797693134862e+308, 4.6737e-01, 1.1971e-02, + 2DIAGNOSTIC, 10, -6.530931001024e-01, 7.948069843522e-04, 4.7959e-01, 1.2218e-02, + 2DIAGNOSTIC, 11, -6.531998217869e-01, 6.119694655699e-04, 4.9168e-01, 1.2089e-02, + 2DIAGNOSTIC, 12, -6.533392871366e-01, 4.276334841158e-04, 5.0382e-01, 1.2136e-02, + 2DIAGNOSTIC, 13, -6.534731536428e-01, 2.625823605612e-04, 5.1598e-01, 1.2160e-02, + 2DIAGNOSTIC, 14, -6.536284709441e-01, 1.462208064244e-04, 5.3702e-01, 2.1043e-02, + 2DIAGNOSTIC, 15, -6.536711455718e-01, 8.436908648138e-05, 5.4895e-01, 1.1932e-02, + 2DIAGNOSTIC, 16, -6.536890577211e-01, 6.244805098864e-05, 5.6163e-01, 1.2673e-02, + 2DIAGNOSTIC, 17, -6.537596851771e-01, 5.676967186713e-05, 5.7599e-01, 1.4363e-02, + 2DIAGNOSTIC, 18, -6.538344232705e-01, 4.912790553589e-05, 5.9195e-01, 1.5962e-02, + 2DIAGNOSTIC, 19, -6.538455788724e-01, 4.091199140397e-05, 6.0399e-01, 1.2040e-02, + 2DIAGNOSTIC, 20, -6.539259213755e-01, 3.398722046883e-05, 6.1598e-01, 1.1987e-02, + 2DIAGNOSTIC, 21, -6.539892284374e-01, 2.820352969886e-05, 6.3111e-01, 1.5138e-02, + 2DIAGNOSTIC, 22, -6.540176680149e-01, 2.371288598118e-05, 6.4463e-01, 1.3511e-02, + 2DIAGNOSTIC, 23, -6.540794018600e-01, 2.116144882394e-05, 6.5784e-01, 1.3210e-02, + 2DIAGNOSTIC, 24, -6.541231248687e-01, 2.056428179018e-05, 6.6983e-01, 1.1994e-02, + 2DIAGNOSTIC, 25, -6.541669823822e-01, 1.971454812816e-05, 6.8186e-01, 1.2028e-02, + 2DIAGNOSTIC, 26, -6.542730897586e-01, 1.923790531275e-05, 6.9833e-01, 1.6476e-02, + 2DIAGNOSTIC, 27, -6.543284286891e-01, 1.907659504698e-05, 7.1030e-01, 1.1963e-02, + 2DIAGNOSTIC, 28, -6.543481596500e-01, 1.872042702918e-05, 7.2612e-01, 1.5818e-02, + 2DIAGNOSTIC, 29, -6.543683512777e-01, 1.719355076240e-05, 7.4333e-01, 1.7214e-02, + 2DIAGNOSTIC, 30, -6.543801714525e-01, 1.556715826492e-05, 7.5505e-01, 1.1720e-02, + 2DIAGNOSTIC, 31, -6.544542452824e-01, 1.458422277709e-05, 7.6730e-01, 1.2252e-02, + 2DIAGNOSTIC, 32, -6.545398769552e-01, 1.388148456031e-05, 7.8002e-01, 1.2722e-02, + 2DIAGNOSTIC, 33, -6.545943159346e-01, 1.351887202615e-05, 7.9294e-01, 1.2918e-02, + 2DIAGNOSTIC, 34, -6.546125644453e-01, 1.279402921321e-05, 8.0791e-01, 1.4971e-02, + 2DIAGNOSTIC, 35, -6.546373476730e-01, 1.182433135118e-05, 8.2494e-01, 1.7030e-02, + 2DIAGNOSTIC, 36, -6.546401787599e-01, 1.116077307161e-05, 8.3702e-01, 1.2074e-02, + 2DIAGNOSTIC, 37, -6.546768548331e-01, 1.061939309128e-05, 8.5109e-01, 1.4070e-02, + 2DIAGNOSTIC, 38, -6.546822231218e-01, 9.451571531788e-06, 8.6361e-01, 1.2525e-02, + 2DIAGNOSTIC, 39, -6.546899861096e-01, 7.853609000758e-06, 8.7642e-01, 1.2811e-02, + 2DIAGNOSTIC, 40, -6.547116819026e-01, 6.026444639609e-06, 8.9093e-01, 1.4504e-02, + 2DIAGNOSTIC, 41, -6.547208646832e-01, 4.649501770270e-06, 9.1037e-01, 1.9440e-02, + 2DIAGNOSTIC, 42, -6.547222705366e-01, 3.854992963220e-06, 9.2334e-01, 1.2973e-02, + 2DIAGNOSTIC, 43, -6.547324830964e-01, 3.455682699403e-06, 9.3851e-01, 1.5172e-02, + 2DIAGNOSTIC, 44, -6.547370216004e-01, 3.036066489763e-06, 9.5167e-01, 1.3154e-02, + 2DIAGNOSTIC, 45, -6.547391962863e-01, 2.674984306991e-06, 9.6558e-01, 1.3916e-02, + 2DIAGNOSTIC, 46, -6.547435828647e-01, 2.200782135593e-06, 9.7828e-01, 1.2703e-02, + 2DIAGNOSTIC, 47, -6.547515045552e-01, 2.016747137450e-06, 9.9044e-01, 1.2151e-02, + 2DIAGNOSTIC, 48, -6.547609669111e-01, 1.845262902367e-06, 1.0042e+00, 1.3766e-02, + 2DIAGNOSTIC, 49, -6.547669542725e-01, 1.683300091246e-06, 1.0201e+00, 1.5876e-02, + 2DIAGNOSTIC, 50, -6.547710248795e-01, 1.652251130815e-06, 1.0339e+00, 1.3853e-02, + 2DIAGNOSTIC, 51, -6.547722464683e-01, 1.615141523650e-06, 1.0462e+00, 1.2291e-02, + 2DIAGNOSTIC, 52, -6.547829236782e-01, 1.583193778416e-06, 1.0586e+00, 1.2380e-02, + 2DIAGNOSTIC, 53, -6.547895225131e-01, 1.593417182331e-06, 1.0710e+00, 1.2446e-02, + 2DIAGNOSTIC, 54, -6.547946461665e-01, 1.585233777579e-06, 1.0859e+00, 1.4808e-02, + 2DIAGNOSTIC, 55, -6.547968913043e-01, 1.517795181424e-06, 1.0989e+00, 1.2998e-02, + 2DIAGNOSTIC, 56, -6.548002106497e-01, 1.422554624122e-06, 1.1119e+00, 1.3073e-02, + 2DIAGNOSTIC, 57, -6.548082445927e-01, 1.367852373681e-06, 1.1252e+00, 1.3308e-02, + 2DIAGNOSTIC, 58, -6.548192284945e-01, 1.387355542039e-06, 1.1389e+00, 1.3642e-02, + 2DIAGNOSTIC, 59, -6.548346884947e-01, 1.482104196104e-06, 1.1543e+00, 1.5388e-02, + 2DIAGNOSTIC, 60, -6.548347640106e-01, 1.512781604939e-06, 1.1784e+00, 2.4144e-02, + 2DIAGNOSTIC, 61, -6.548347653837e-01, 1.457608740492e-06, 1.2023e+00, 2.3898e-02, + 2DIAGNOSTIC, 62, -6.548347653838e-01, 1.388885661445e-06, 1.2248e+00, 2.2509e-02, + 2DIAGNOSTIC, 63, -6.548347653838e-01, 1.281320963151e-06, 1.2397e+00, 1.4859e-02, + 2DIAGNOSTIC, 64, -6.548347653838e-01, 1.135917692279e-06, 1.2531e+00, 1.3436e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.278111853495e-01, 1.797693134862e+308, 1.4768e+00, 2.2370e-01, + Elapsed time (stage 1): 1.5017e+00 + + +Total elapsed time: 2.6009e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:40:32 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 55 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 57 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 92.01% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 92.01% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[10987 1621 2730 1378 28234 16277 2239 10303 870 824 1525 442 + 11097 2324 2001 2947 2053 14911 0 969 7191 12540 2657 3654 + 4616 2157 10179 1395 8288 1414 1075 1555 1510 0 646 590 + 787 0 347 287 0 196 1321 0 0 0 0 0 + 0 0 239 0 201 0 223] +[90096 27655 39842 27261 25403 22630 28170 14989 15378 17461 18984 14907 + 14244 12021 14653 9331 13960 10476 17664 8680 7684 7707 7945 9598 + 7749 2672 3093 1733 2704 2635 1736 1953 2305 1990 1567 1009 + 1256 1117 1761 756 1154 1149 1730 1000 802 1207 588 757 + 947 706 1320 718 819 532 0] +[ 0 0 6078 0 616 0 0 0 0 297 0 6581 + 19599 794 482 0 6933 24370 20828 1028 0 0 5007 0 + 0 3382 0 274 12642 315 35743 15431 598 208 482 0 + 11680 2888 0 0 195 0 0 0 21855 947 0 307 + 291 13439 0 528 0 0 491] +[ 1667 4566 1277 1039 1824 955 1318 2277 1960 903 1556 349 + 4296 571 7442 3343 63419 302 685 14749 14918 1854 7724 5913 + 2682 24313 2982 4060 1352 15422 3594 2757 22196 1460 7747 1507 + 2350 64455 2313 2080 1605 3876 2243 8464 1065 19445 616 18823 + 2213 1052 1125 12316 1185 210 11241] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:52:34 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:52:40 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:29 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:29 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:29 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:41 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:44 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC005 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:57:05 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:57:31 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:59:23 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:59:24 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:00:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:00:45 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55b1fe859d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.2528, 107.058, -151.485] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55b1fe6d0730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f57a1264010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55b1fe85d020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 55.5723, -120.229] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55b1fe8630c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f579dba5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55b1fe873840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.2528, 107.058, -151.485] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55b1fe85f890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5798ed1010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55b1fe8773e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 55.5723, -120.229] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55b1fe866130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5795812010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.251470906541e-01, 1.797693134862e+308, 2.3557e-01, 2.3557e-01, + 2DIAGNOSTIC, 2, -4.262268914083e-01, 1.797693134862e+308, 2.3692e-01, 1.3499e-03, + 2DIAGNOSTIC, 3, -4.295102620993e-01, 1.797693134862e+308, 2.3825e-01, 1.3249e-03, + 2DIAGNOSTIC, 4, -4.340250002722e-01, 1.797693134862e+308, 2.3963e-01, 1.3888e-03, + 2DIAGNOSTIC, 5, -4.553713859877e-01, 1.797693134862e+308, 2.4117e-01, 1.5368e-03, + 2DIAGNOSTIC, 6, -4.594513287290e-01, 1.797693134862e+308, 2.4266e-01, 1.4861e-03, + 2DIAGNOSTIC, 7, -4.598431074433e-01, 1.797693134862e+308, 2.4496e-01, 2.3050e-03, + 2DIAGNOSTIC, 8, -4.636616207509e-01, 1.797693134862e+308, 2.4632e-01, 1.3621e-03, + 2DIAGNOSTIC, 9, -4.633703731535e-01, 1.797693134862e+308, 2.4787e-01, 1.5430e-03, + 2DIAGNOSTIC, 10, -4.636716051503e-01, 6.833859706320e-03, 2.4938e-01, 1.5161e-03, + 2DIAGNOSTIC, 11, -4.642429910453e-01, 5.314063359064e-03, 2.5085e-01, 1.4641e-03, + 2DIAGNOSTIC, 12, -4.632852850602e-01, 3.600681898655e-03, 2.5244e-01, 1.5941e-03, + 2DIAGNOSTIC, 13, -4.815814304917e-01, 2.877342014399e-03, 2.5394e-01, 1.5020e-03, + 2DIAGNOSTIC, 14, -5.505905847684e-01, 5.178365152861e-03, 2.5572e-01, 1.7781e-03, + 2DIAGNOSTIC, 15, -5.921176151364e-01, 9.078524235141e-03, 2.5724e-01, 1.5159e-03, + 2DIAGNOSTIC, 16, -6.302501481385e-01, 1.306092617654e-02, 2.5897e-01, 1.7271e-03, + 2DIAGNOSTIC, 17, -6.379314410686e-01, 1.553276466993e-02, 2.6089e-01, 1.9281e-03, + 2DIAGNOSTIC, 18, -6.368403969799e-01, 1.634165075294e-02, 2.6311e-01, 2.2130e-03, + 2DIAGNOSTIC, 19, -6.420828347206e-01, 1.566975898265e-02, 2.6534e-01, 2.2359e-03, + 2DIAGNOSTIC, 20, -6.428385529306e-01, 1.365018145800e-02, 2.6720e-01, 1.8601e-03, + 2DIAGNOSTIC, 21, -6.487309117748e-01, 1.079168868374e-02, 2.6934e-01, 2.1360e-03, + 2DIAGNOSTIC, 22, -6.494969454131e-01, 7.269807063276e-03, 2.7129e-01, 1.9491e-03, + 2DIAGNOSTIC, 23, -6.465946590243e-01, 3.792004923329e-03, 2.7332e-01, 2.0320e-03, + 2DIAGNOSTIC, 24, -6.473861323449e-01, 1.850065820036e-03, 2.7502e-01, 1.7009e-03, + 2DIAGNOSTIC, 25, -6.469898626423e-01, 7.675798382551e-04, 2.7673e-01, 1.7071e-03, + 2DIAGNOSTIC, 26, -6.470344119701e-01, 4.763285747971e-04, 2.7893e-01, 2.2061e-03, + 2DIAGNOSTIC, 27, -6.483241749937e-01, 3.406986389846e-04, 2.8147e-01, 2.5389e-03, + 2DIAGNOSTIC, 28, -6.483653489429e-01, 1.644951362012e-04, 2.8314e-01, 1.6720e-03, + 2DIAGNOSTIC, 29, -6.463004064111e-01, 4.481800642950e-05, 2.8507e-01, 1.9300e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.322576508738e-01, 1.797693134862e+308, 5.3025e-01, 2.4517e-01, + 2DIAGNOSTIC, 2, -5.318313848077e-01, 1.797693134862e+308, 5.3286e-01, 2.6081e-03, + 2DIAGNOSTIC, 3, -5.338811055868e-01, 1.797693134862e+308, 5.3550e-01, 2.6481e-03, + 2DIAGNOSTIC, 4, -5.385469864101e-01, 1.797693134862e+308, 5.3789e-01, 2.3880e-03, + 2DIAGNOSTIC, 5, -5.434698328851e-01, 1.797693134862e+308, 5.4039e-01, 2.4991e-03, + 2DIAGNOSTIC, 6, -5.441769726863e-01, 1.797693134862e+308, 5.4250e-01, 2.1069e-03, + 2DIAGNOSTIC, 7, -5.475189933731e-01, 1.797693134862e+308, 5.4510e-01, 2.6031e-03, + 2DIAGNOSTIC, 8, -5.497626519228e-01, 1.797693134862e+308, 5.4778e-01, 2.6841e-03, + 2DIAGNOSTIC, 9, -5.489297542831e-01, 1.797693134862e+308, 5.5003e-01, 2.2440e-03, + 2DIAGNOSTIC, 10, -5.494447254273e-01, 2.498268438766e-03, 5.5251e-01, 2.4829e-03, + 2DIAGNOSTIC, 11, -5.507689897493e-01, 2.064716831604e-03, 5.5478e-01, 2.2700e-03, + 2DIAGNOSTIC, 12, -5.505192525655e-01, 1.488829229484e-03, 5.5725e-01, 2.4681e-03, + 2DIAGNOSTIC, 13, -5.655514814455e-01, 1.548601985274e-03, 5.5993e-01, 2.6820e-03, + 2DIAGNOSTIC, 14, -5.758538236175e-01, 1.994674308410e-03, 5.6294e-01, 3.0119e-03, + 2DIAGNOSTIC, 15, -5.793485307872e-01, 2.483992704999e-03, 5.6567e-01, 2.7261e-03, + 2DIAGNOSTIC, 16, -5.827753751325e-01, 2.819582914957e-03, 5.6837e-01, 2.7041e-03, + 2DIAGNOSTIC, 17, -5.857734105018e-01, 3.045295411448e-03, 5.7066e-01, 2.2829e-03, + 2DIAGNOSTIC, 18, -6.154470218136e-01, 3.853847664804e-03, 5.7294e-01, 2.2829e-03, + 2DIAGNOSTIC, 19, -6.653812100416e-01, 5.472769707827e-03, 5.7527e-01, 2.3348e-03, + 2DIAGNOSTIC, 20, -7.104530099535e-01, 7.486070900751e-03, 5.7960e-01, 4.3290e-03, + 2DIAGNOSTIC, 21, -7.153278658491e-01, 8.717656133869e-03, 5.8185e-01, 2.2440e-03, + 2DIAGNOSTIC, 22, -7.339797774759e-01, 9.418323085826e-03, 5.8409e-01, 2.2390e-03, + 2DIAGNOSTIC, 23, -7.454139910516e-01, 9.704150714642e-03, 5.8632e-01, 2.2349e-03, + 2DIAGNOSTIC, 24, -7.481854428098e-01, 9.294913531987e-03, 5.8867e-01, 2.3439e-03, + 2DIAGNOSTIC, 25, -7.813297090072e-01, 8.729610367978e-03, 5.9128e-01, 2.6178e-03, + 2DIAGNOSTIC, 26, -7.871360245155e-01, 7.570886599063e-03, 5.9416e-01, 2.8789e-03, + 2DIAGNOSTIC, 27, -7.907850224007e-01, 5.934327485585e-03, 5.9649e-01, 2.3260e-03, + 2DIAGNOSTIC, 28, -8.056136936644e-01, 4.601313086597e-03, 5.9939e-01, 2.9049e-03, + 2DIAGNOSTIC, 29, -8.235809915230e-01, 3.982999569765e-03, 6.0167e-01, 2.2779e-03, + 2DIAGNOSTIC, 30, -8.339459530449e-01, 3.856675384768e-03, 6.0432e-01, 2.6450e-03, + 2DIAGNOSTIC, 31, -8.660222577701e-01, 3.892249104781e-03, 6.0716e-01, 2.8450e-03, + 2DIAGNOSTIC, 32, -8.982876762515e-01, 4.240583933713e-03, 6.0937e-01, 2.2080e-03, + 2DIAGNOSTIC, 33, -9.703439171286e-01, 5.228656611176e-03, 6.1248e-01, 3.1130e-03, + 2DIAGNOSTIC, 34, -9.937165264361e-01, 5.932640361686e-03, 6.1489e-01, 2.4130e-03, + 2DIAGNOSTIC, 35, -1.020233380110e+00, 6.730054309202e-03, 6.1696e-01, 2.0680e-03, + 2DIAGNOSTIC, 36, -1.022752734095e+00, 6.929305409386e-03, 6.1912e-01, 2.1570e-03, + 2DIAGNOSTIC, 37, -1.026882093942e+00, 6.542194351408e-03, 6.2156e-01, 2.4400e-03, + 2DIAGNOSTIC, 38, -1.029143279474e+00, 5.738564253248e-03, 6.2464e-01, 3.0799e-03, + 2DIAGNOSTIC, 39, -1.028791809657e+00, 4.630835106561e-03, 6.2691e-01, 2.2709e-03, + 2DIAGNOSTIC, 40, -1.033453018622e+00, 3.313209286507e-03, 6.2970e-01, 2.7878e-03, + 2DIAGNOSTIC, 41, -1.035533375604e+00, 2.096347908143e-03, 6.3312e-01, 3.4211e-03, + 2DIAGNOSTIC, 42, -1.035852786186e+00, 1.046594168573e-03, 6.3543e-01, 2.3091e-03, + 2DIAGNOSTIC, 43, -1.035901543770e+00, 6.002377809894e-04, 6.3755e-01, 2.1169e-03, + 2DIAGNOSTIC, 44, -1.036252389961e+00, 3.225010759254e-04, 6.3967e-01, 2.1219e-03, + 2DIAGNOSTIC, 45, -1.036509192949e+00, 2.527156424127e-04, 6.4179e-01, 2.1272e-03, + 2DIAGNOSTIC, 46, -1.037584062424e+00, 1.908507354284e-04, 6.4406e-01, 2.2700e-03, + 2DIAGNOSTIC, 47, -1.042742068360e+00, 1.869166937572e-04, 6.4622e-01, 2.1520e-03, + 2DIAGNOSTIC, 48, -1.045377010238e+00, 2.024926678861e-04, 6.5010e-01, 3.8810e-03, + 2DIAGNOSTIC, 49, -1.046191113278e+00, 2.006706619988e-04, 6.5252e-01, 2.4240e-03, + 2DIAGNOSTIC, 50, -1.046254724560e+00, 2.141543934176e-04, 6.5462e-01, 2.0959e-03, + 2DIAGNOSTIC, 51, -1.046288431453e+00, 2.215173450629e-04, 6.5795e-01, 3.3350e-03, + 2DIAGNOSTIC, 52, -1.046293458077e+00, 2.091318576712e-04, 6.6009e-01, 2.1369e-03, + 2DIAGNOSTIC, 53, -1.046312539314e+00, 1.775628494074e-04, 6.6219e-01, 2.1021e-03, + 2DIAGNOSTIC, 54, -1.046059436130e+00, 1.316969792839e-04, 6.6436e-01, 2.1710e-03, + 2DIAGNOSTIC, 55, -1.046074189567e+00, 7.769180629921e-05, 6.6700e-01, 2.6379e-03, + 2DIAGNOSTIC, 56, -1.045838103241e+00, 2.335165120698e-05, 6.7015e-01, 3.1459e-03, + 2DIAGNOSTIC, 57, -1.046084317517e+00, 1.734789399372e-06, 6.7271e-01, 2.5620e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.669278924073e-01, 1.797693134862e+308, 9.2902e-01, 2.5631e-01, + 2DIAGNOSTIC, 2, -8.714183578335e-01, 1.797693134862e+308, 9.4249e-01, 1.3475e-02, + 2DIAGNOSTIC, 3, -8.755661991561e-01, 1.797693134862e+308, 9.5625e-01, 1.3763e-02, + 2DIAGNOSTIC, 4, -8.781783239989e-01, 1.797693134862e+308, 9.6979e-01, 1.3533e-02, + 2DIAGNOSTIC, 5, -8.794329014803e-01, 1.797693134862e+308, 9.8321e-01, 1.3427e-02, + 2DIAGNOSTIC, 6, -8.800954214655e-01, 1.797693134862e+308, 9.9653e-01, 1.3317e-02, + 2DIAGNOSTIC, 7, -8.819221687998e-01, 1.797693134862e+308, 1.0161e+00, 1.9586e-02, + 2DIAGNOSTIC, 8, -8.823947097320e-01, 1.797693134862e+308, 1.0324e+00, 1.6269e-02, + 2DIAGNOSTIC, 9, -8.827876156281e-01, 1.797693134862e+308, 1.0455e+00, 1.3091e-02, + 2DIAGNOSTIC, 10, -8.830550042127e-01, 1.061825997965e-03, 1.0578e+00, 1.2333e-02, + 2DIAGNOSTIC, 11, -8.839413243090e-01, 7.081786845970e-04, 1.0759e+00, 1.8055e-02, + 2DIAGNOSTIC, 12, -8.845511252374e-01, 4.847886797219e-04, 1.0906e+00, 1.4717e-02, + 2DIAGNOSTIC, 13, -8.845689264983e-01, 3.543016221974e-04, 1.1037e+00, 1.3157e-02, + 2DIAGNOSTIC, 14, -8.846640127177e-01, 2.733778806446e-04, 1.1190e+00, 1.5290e-02, + 2DIAGNOSTIC, 15, -8.846867181996e-01, 2.062397693164e-04, 1.1359e+00, 1.6836e-02, + 2DIAGNOSTIC, 16, -8.848203379289e-01, 1.437158627521e-04, 1.1505e+00, 1.4641e-02, + 2DIAGNOSTIC, 17, -8.854308460083e-01, 1.214107449392e-04, 1.1653e+00, 1.4818e-02, + 2DIAGNOSTIC, 18, -8.854610732853e-01, 9.935103105634e-05, 1.1782e+00, 1.2920e-02, + 2DIAGNOSTIC, 19, -8.854434856654e-01, 7.729208638774e-05, 1.1932e+00, 1.4940e-02, + 2DIAGNOSTIC, 20, -8.854900502061e-01, 5.535294893806e-05, 1.2079e+00, 1.4710e-02, + 2DIAGNOSTIC, 21, -8.855376539219e-01, 4.451165649601e-05, 1.2264e+00, 1.8555e-02, + 2DIAGNOSTIC, 22, -8.856291241710e-01, 4.075815911647e-05, 1.2402e+00, 1.3756e-02, + 2DIAGNOSTIC, 23, -8.856596598757e-01, 3.427234551018e-05, 1.2532e+00, 1.2989e-02, + 2DIAGNOSTIC, 24, -8.856647546363e-01, 2.675199150198e-05, 1.2696e+00, 1.6436e-02, + 2DIAGNOSTIC, 25, -8.856683485137e-01, 1.784990862738e-05, 1.2837e+00, 1.4077e-02, + 2DIAGNOSTIC, 26, -8.856447474873e-01, 9.212716511275e-06, 1.2978e+00, 1.4123e-02, + 2DIAGNOSTIC, 27, -8.856459438386e-01, 7.744804670584e-06, 1.3102e+00, 1.2397e-02, + 2DIAGNOSTIC, 28, -8.856480905288e-01, 6.143541680874e-06, 1.3233e+00, 1.3086e-02, + 2DIAGNOSTIC, 29, -8.856786230942e-01, 4.325183584883e-06, 1.3376e+00, 1.4337e-02, + 2DIAGNOSTIC, 30, -8.857374322589e-01, 3.447925245606e-06, 1.3638e+00, 2.6186e-02, + 2DIAGNOSTIC, 31, -8.857374736704e-01, 2.864574120784e-06, 1.3769e+00, 1.3023e-02, + 2DIAGNOSTIC, 32, -8.857387573347e-01, 3.081886034248e-06, 1.3898e+00, 1.2924e-02, + 2DIAGNOSTIC, 33, -8.857398819359e-01, 3.399718076322e-06, 1.4028e+00, 1.2979e-02, + 2DIAGNOSTIC, 34, -8.857403924837e-01, 3.510204621408e-06, 1.4216e+00, 1.8877e-02, + 2DIAGNOSTIC, 35, -8.857404010394e-01, 3.399792415364e-06, 1.4389e+00, 1.7213e-02, + 2DIAGNOSTIC, 36, -8.857404017427e-01, 2.850553714431e-06, 1.4525e+00, 1.3666e-02, + 2DIAGNOSTIC, 37, -8.857404018732e-01, 2.165377253765e-06, 1.4678e+00, 1.5277e-02, + 2DIAGNOSTIC, 38, -8.857404019608e-01, 1.408775950094e-06, 1.4835e+00, 1.5732e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.500037867482e-01, 1.797693134862e+308, 1.9086e+00, 4.2512e-01, + 2DIAGNOSTIC, 2, -7.505476531620e-01, 1.797693134862e+308, 1.9906e+00, 8.1966e-02, + 2DIAGNOSTIC, 3, -7.506471257711e-01, 1.797693134862e+308, 2.0751e+00, 8.4441e-02, + 2DIAGNOSTIC, 4, -7.508676114573e-01, 1.797693134862e+308, 2.1580e+00, 8.2914e-02, + 2DIAGNOSTIC, 5, -7.509865378041e-01, 1.797693134862e+308, 2.2773e+00, 1.1932e-01, + 2DIAGNOSTIC, 6, -7.510432240412e-01, 1.797693134862e+308, 2.3772e+00, 9.9923e-02, + 2DIAGNOSTIC, 7, -7.510946322448e-01, 1.797693134862e+308, 2.4891e+00, 1.1193e-01, + 2DIAGNOSTIC, 8, -7.512032304396e-01, 1.797693134862e+308, 2.5742e+00, 8.5038e-02, + 2DIAGNOSTIC, 9, -7.512351679640e-01, 1.797693134862e+308, 2.6604e+00, 8.6206e-02, + 2DIAGNOSTIC, 10, -7.513818455303e-01, 9.721721777085e-05, 2.7772e+00, 1.1677e-01, + 2DIAGNOSTIC, 11, -7.514182145940e-01, 6.757991830594e-05, 2.8664e+00, 8.9291e-02, + 2DIAGNOSTIC, 12, -7.514550770452e-01, 5.544707803949e-05, 2.9711e+00, 1.0461e-01, + 2DIAGNOSTIC, 13, -7.514929817276e-01, 4.428784941661e-05, 3.0942e+00, 1.2312e-01, + 2DIAGNOSTIC, 14, -7.514888416757e-01, 3.667849959176e-05, 3.2017e+00, 1.0756e-01, + 2DIAGNOSTIC, 15, -7.515707919113e-01, 3.199056946958e-05, 3.3084e+00, 1.0664e-01, + 2DIAGNOSTIC, 16, -7.517108305638e-01, 2.973747054798e-05, 3.4409e+00, 1.3254e-01, + 2DIAGNOSTIC, 17, -7.517185376046e-01, 2.641466129817e-05, 3.5448e+00, 1.0392e-01, + 2DIAGNOSTIC, 18, -7.517160345057e-01, 2.349744378458e-05, 3.6346e+00, 8.9747e-02, + 2DIAGNOSTIC, 19, -7.517145761689e-01, 1.945897551305e-05, 3.7408e+00, 1.0621e-01, + 2DIAGNOSTIC, 20, -7.517122015183e-01, 1.686886872203e-05, 3.8281e+00, 8.7274e-02, + 2DIAGNOSTIC, 21, -7.517098201362e-01, 1.365422589970e-05, 3.9499e+00, 1.2181e-01, + 2DIAGNOSTIC, 22, -7.517098227701e-01, 1.022512679059e-05, 4.0462e+00, 9.6350e-02, + 2DIAGNOSTIC, 23, -7.517098334127e-01, 6.951633678413e-06, 4.1536e+00, 1.0736e-01, + 2DIAGNOSTIC, 24, -7.517098397445e-01, 3.355611530510e-06, 4.2592e+00, 1.0566e-01, + Elapsed time (stage 0): 4.4096e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -1.132121759183e+00, 1.797693134862e+308, 2.3094e-01, 2.3094e-01, + 2DIAGNOSTIC, 2, -1.135244291332e+00, 1.797693134862e+308, 2.3254e-01, 1.6000e-03, + 2DIAGNOSTIC, 3, -1.141301376856e+00, 1.797693134862e+308, 2.3411e-01, 1.5750e-03, + 2DIAGNOSTIC, 4, -1.148922879337e+00, 1.797693134862e+308, 2.3569e-01, 1.5762e-03, + 2DIAGNOSTIC, 5, -1.159087640681e+00, 1.797693134862e+308, 2.3719e-01, 1.5049e-03, + 2DIAGNOSTIC, 6, -1.170042716439e+00, 1.797693134862e+308, 2.3897e-01, 1.7800e-03, + 2DIAGNOSTIC, 7, -1.174888291074e+00, 1.797693134862e+308, 2.4078e-01, 1.8089e-03, + 2DIAGNOSTIC, 8, -1.178365259689e+00, 1.797693134862e+308, 2.4321e-01, 2.4290e-03, + 2DIAGNOSTIC, 9, -1.178338166028e+00, 1.797693134862e+308, 2.4514e-01, 1.9262e-03, + 2DIAGNOSTIC, 10, -1.176915887175e+00, 3.003246823042e-03, 2.4716e-01, 2.0292e-03, + 2DIAGNOSTIC, 11, -1.176191805554e+00, 2.284210717971e-03, 2.4997e-01, 2.8050e-03, + 2DIAGNOSTIC, 12, -1.175395510439e+00, 1.528613093096e-03, 2.5305e-01, 3.0799e-03, + 2DIAGNOSTIC, 13, -1.175415906628e+00, 8.669774588436e-04, 2.5501e-01, 1.9569e-03, + 2DIAGNOSTIC, 14, -1.175501314695e+00, 3.548007306858e-04, 2.5687e-01, 1.8601e-03, + 2DIAGNOSTIC, 15, -1.174600854045e+00, 2.701784679188e-05, 2.5876e-01, 1.8921e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -1.071734838063e+00, 1.797693134862e+308, 4.8173e-01, 2.2297e-01, + 2DIAGNOSTIC, 2, -1.071237462028e+00, 1.797693134862e+308, 4.8433e-01, 2.6069e-03, + 2DIAGNOSTIC, 3, -1.071044000081e+00, 1.797693134862e+308, 4.8646e-01, 2.1219e-03, + 2DIAGNOSTIC, 4, -1.071017613015e+00, 1.797693134862e+308, 4.8827e-01, 1.8120e-03, + 2DIAGNOSTIC, 5, -1.071138545864e+00, 1.797693134862e+308, 4.9026e-01, 1.9891e-03, + 2DIAGNOSTIC, 6, -1.071737794320e+00, 1.797693134862e+308, 4.9225e-01, 1.9960e-03, + 2DIAGNOSTIC, 7, -1.072876851079e+00, 1.797693134862e+308, 4.9426e-01, 2.0092e-03, + 2DIAGNOSTIC, 8, -1.074773726147e+00, 1.797693134862e+308, 4.9619e-01, 1.9271e-03, + 2DIAGNOSTIC, 9, -1.076225847947e+00, 1.797693134862e+308, 4.9812e-01, 1.9310e-03, + 2DIAGNOSTIC, 10, -1.078036008079e+00, 3.804912695752e-04, 5.0033e-01, 2.2130e-03, + 2DIAGNOSTIC, 11, -1.079647764905e+00, 4.856719652178e-04, 5.0251e-01, 2.1820e-03, + 2DIAGNOSTIC, 12, -1.081097100745e+00, 5.504073744639e-04, 5.0497e-01, 2.4559e-03, + 2DIAGNOSTIC, 13, -1.081293896485e+00, 5.552991404122e-04, 5.0744e-01, 2.4719e-03, + 2DIAGNOSTIC, 14, -1.080798975832e+00, 4.998859056622e-04, 5.1020e-01, 2.7552e-03, + 2DIAGNOSTIC, 15, -1.080817987899e+00, 4.093999690763e-04, 5.1237e-01, 2.1701e-03, + 2DIAGNOSTIC, 16, -1.080847485003e+00, 3.028443818284e-04, 5.1461e-01, 2.2440e-03, + 2DIAGNOSTIC, 17, -1.081941682337e+00, 2.151348408270e-04, 5.1714e-01, 2.5251e-03, + 2DIAGNOSTIC, 18, -1.082661659870e+00, 1.554428282012e-04, 5.2027e-01, 3.1290e-03, + 2DIAGNOSTIC, 19, -1.082687608731e+00, 1.082477676580e-04, 5.2247e-01, 2.2070e-03, + 2DIAGNOSTIC, 20, -1.082438965250e+00, 7.651853488765e-05, 5.2492e-01, 2.4519e-03, + 2DIAGNOSTIC, 21, -1.082459832294e+00, 6.094258759137e-05, 5.2709e-01, 2.1689e-03, + 2DIAGNOSTIC, 22, -1.082216728406e+00, 5.527387228328e-05, 5.2959e-01, 2.4979e-03, + 2DIAGNOSTIC, 23, -1.082229309831e+00, 4.748515375139e-05, 5.3208e-01, 2.4900e-03, + 2DIAGNOSTIC, 24, -1.081453214672e+00, 2.220425507128e-05, 5.3489e-01, 2.8119e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.080022801072e-01, 1.797693134862e+308, 7.7585e-01, 2.4096e-01, + 2DIAGNOSTIC, 2, -9.105532644902e-01, 1.797693134862e+308, 7.9011e-01, 1.4254e-02, + 2DIAGNOSTIC, 3, -9.128941075981e-01, 1.797693134862e+308, 8.0400e-01, 1.3893e-02, + 2DIAGNOSTIC, 4, -9.140190535579e-01, 1.797693134862e+308, 8.1803e-01, 1.4025e-02, + 2DIAGNOSTIC, 5, -9.153925934956e-01, 1.797693134862e+308, 8.3216e-01, 1.4134e-02, + 2DIAGNOSTIC, 6, -9.165984111464e-01, 1.797693134862e+308, 8.4949e-01, 1.7329e-02, + 2DIAGNOSTIC, 7, -9.183422429870e-01, 1.797693134862e+308, 8.7059e-01, 2.1104e-02, + 2DIAGNOSTIC, 8, -9.187239915967e-01, 1.797693134862e+308, 8.8386e-01, 1.3268e-02, + 2DIAGNOSTIC, 9, -9.190805811350e-01, 1.797693134862e+308, 8.9684e-01, 1.2980e-02, + 2DIAGNOSTIC, 10, -9.193504755244e-01, 7.828243210159e-04, 9.1182e-01, 1.4975e-02, + 2DIAGNOSTIC, 11, -9.193903432577e-01, 5.636952134233e-04, 9.2673e-01, 1.4913e-02, + 2DIAGNOSTIC, 12, -9.194793601717e-01, 3.977004731095e-04, 9.4005e-01, 1.3317e-02, + 2DIAGNOSTIC, 13, -9.195019522953e-01, 2.778757234513e-04, 9.5545e-01, 1.5405e-02, + 2DIAGNOSTIC, 14, -9.196238760770e-01, 1.777483409185e-04, 9.7041e-01, 1.4964e-02, + 2DIAGNOSTIC, 15, -9.197051308203e-01, 1.047537590284e-04, 9.8350e-01, 1.3084e-02, + 2DIAGNOSTIC, 16, -9.202194845306e-01, 6.400903699876e-05, 9.9965e-01, 1.6149e-02, + 2DIAGNOSTIC, 17, -9.205385804256e-01, 5.968308366582e-05, 1.0155e+00, 1.5860e-02, + 2DIAGNOSTIC, 18, -9.207739400166e-01, 6.096459594409e-05, 1.0313e+00, 1.5793e-02, + 2DIAGNOSTIC, 19, -9.210703121007e-01, 6.722565287585e-05, 1.0509e+00, 1.9641e-02, + 2DIAGNOSTIC, 20, -9.210354389074e-01, 7.034755999535e-05, 1.0670e+00, 1.6086e-02, + 2DIAGNOSTIC, 21, -9.210574078425e-01, 6.764864858691e-05, 1.0849e+00, 1.7890e-02, + 2DIAGNOSTIC, 22, -9.210698600325e-01, 6.041838102745e-05, 1.0986e+00, 1.3693e-02, + 2DIAGNOSTIC, 23, -9.211086287088e-01, 4.911373717521e-05, 1.1140e+00, 1.5421e-02, + 2DIAGNOSTIC, 24, -9.210759768798e-01, 3.546726423000e-05, 1.1296e+00, 1.5542e-02, + 2DIAGNOSTIC, 25, -9.210630769026e-01, 2.048147637022e-05, 1.1426e+00, 1.3047e-02, + 2DIAGNOSTIC, 26, -9.210965437538e-01, 1.135147861849e-05, 1.1556e+00, 1.2980e-02, + 2DIAGNOSTIC, 27, -9.211004563342e-01, 5.580704527094e-06, 1.1711e+00, 1.5481e-02, + 2DIAGNOSTIC, 28, -9.211039454966e-01, 2.347224486561e-06, 1.1908e+00, 1.9708e-02, + 2DIAGNOSTIC, 29, -9.210775431270e-01, 2.128737810948e-06, 1.2067e+00, 1.5946e-02, + 2DIAGNOSTIC, 30, -9.210775706548e-01, 1.480936879454e-06, 1.2206e+00, 1.3860e-02, + 2DIAGNOSTIC, 31, -9.210775912834e-01, 1.042735420689e-06, 1.2329e+00, 1.2300e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.707442239669e-01, 1.797693134862e+308, 1.6612e+00, 4.2831e-01, + 2DIAGNOSTIC, 2, -7.713455499819e-01, 1.797693134862e+308, 1.7464e+00, 8.5190e-02, + 2DIAGNOSTIC, 3, -7.718183878303e-01, 1.797693134862e+308, 1.8342e+00, 8.7759e-02, + 2DIAGNOSTIC, 4, -7.723582746875e-01, 1.797693134862e+308, 1.9916e+00, 1.5741e-01, + 2DIAGNOSTIC, 5, -7.724250739856e-01, 1.797693134862e+308, 2.0953e+00, 1.0373e-01, + 2DIAGNOSTIC, 6, -7.724330933106e-01, 1.797693134862e+308, 2.1837e+00, 8.8374e-02, + 2DIAGNOSTIC, 7, -7.724336005211e-01, 1.797693134862e+308, 2.2714e+00, 8.7779e-02, + 2DIAGNOSTIC, 8, -7.724370009213e-01, 1.797693134862e+308, 2.3731e+00, 1.0167e-01, + 2DIAGNOSTIC, 9, -7.724348256376e-01, 1.797693134862e+308, 2.4880e+00, 1.1492e-01, + 2DIAGNOSTIC, 10, -7.724337782978e-01, 1.177364138660e-04, 2.5930e+00, 1.0494e-01, + 2DIAGNOSTIC, 11, -7.724227551684e-01, 5.891547831630e-05, 2.6937e+00, 1.0075e-01, + 2DIAGNOSTIC, 12, -7.724128112185e-01, 2.284202798619e-05, 2.7946e+00, 1.0084e-01, + 2DIAGNOSTIC, 13, -7.724063252175e-01, 3.291553583501e-06, 2.8992e+00, 1.0464e-01, + Elapsed time (stage 1): 3.0382e+00 + + +Total elapsed time: 7.4513e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:00:55 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:00:56 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5572e7b784f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 55.5723, -120.229] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5572e7b7dfa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbd9eb32010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5572e7b79850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 55.5723, -120.229] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5572e7b76f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbd9b473010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5572e7b90b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 55.5723, -120.229] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5572e7b7d550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbd97db4010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5572e7b95d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 55.5723, -120.229] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5572e7b93c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbd946f5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x5572e7b97f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 55.5723, -120.229] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5572e7b963a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbd91036010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5572e7b98540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 55.5723, -120.229] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5572e7b984d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbd8d977010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.218361131240e-01, 1.797693134862e+308, 2.1821e-01, 2.1821e-01, + 2DIAGNOSTIC, 2, -8.239791064921e-01, 1.797693134862e+308, 2.2025e-01, 2.0421e-03, + 2DIAGNOSTIC, 3, -8.259671661999e-01, 1.797693134862e+308, 2.2264e-01, 2.3880e-03, + 2DIAGNOSTIC, 4, -8.270539377508e-01, 1.797693134862e+308, 2.2461e-01, 1.9648e-03, + 2DIAGNOSTIC, 5, -8.272315386080e-01, 1.797693134862e+308, 2.2667e-01, 2.0649e-03, + 2DIAGNOSTIC, 6, -8.275665645407e-01, 1.797693134862e+308, 2.2872e-01, 2.0468e-03, + 2DIAGNOSTIC, 7, -8.286337043683e-01, 1.797693134862e+308, 2.3094e-01, 2.2259e-03, + 2DIAGNOSTIC, 8, -8.288289615293e-01, 1.797693134862e+308, 2.3341e-01, 2.4691e-03, + 2DIAGNOSTIC, 9, -8.291168848545e-01, 1.797693134862e+308, 2.3565e-01, 2.2371e-03, + 2DIAGNOSTIC, 10, -8.300076520342e-01, 5.345402507717e-04, 2.3812e-01, 2.4672e-03, + 2DIAGNOSTIC, 11, -8.305319011794e-01, 3.917911204352e-04, 2.4063e-01, 2.5182e-03, + 2DIAGNOSTIC, 12, -8.305336128002e-01, 2.977021517222e-04, 2.4313e-01, 2.4941e-03, + 2DIAGNOSTIC, 13, -8.305494195560e-01, 2.441281872941e-04, 2.4564e-01, 2.5110e-03, + 2DIAGNOSTIC, 14, -8.305612722944e-01, 2.036004935537e-04, 2.4849e-01, 2.8510e-03, + 2DIAGNOSTIC, 15, -8.305661164111e-01, 1.540210901733e-04, 2.5143e-01, 2.9390e-03, + 2DIAGNOSTIC, 16, -8.305662107203e-01, 1.031545237291e-04, 2.5383e-01, 2.4049e-03, + 2DIAGNOSTIC, 17, -8.305663295724e-01, 7.072627581386e-05, 2.5610e-01, 2.2640e-03, + 2DIAGNOSTIC, 18, -8.305669891015e-01, 3.948918880770e-05, 2.5837e-01, 2.2669e-03, + 2DIAGNOSTIC, 19, -8.305690345815e-01, 1.293514731558e-05, 2.6055e-01, 2.1889e-03, + 2DIAGNOSTIC, 20, -8.305727461388e-01, 3.077055328461e-06, 2.6335e-01, 2.7959e-03, + 2DIAGNOSTIC, 21, -8.305734264096e-01, 2.596604311879e-06, 2.6555e-01, 2.1968e-03, + 2DIAGNOSTIC, 22, -8.305736933468e-01, 2.087269328759e-06, 2.6777e-01, 2.2180e-03, + 2DIAGNOSTIC, 23, -8.305747067715e-01, 1.809730465083e-06, 2.7494e-01, 7.1709e-03, + 2DIAGNOSTIC, 24, -8.305747067215e-01, 1.682026647930e-06, 2.8197e-01, 7.0350e-03, + 2DIAGNOSTIC, 25, -8.305747067215e-01, 1.597071262932e-06, 2.8442e-01, 2.4459e-03, + 2DIAGNOSTIC, 26, -8.305747067214e-01, 1.489945360846e-06, 2.8689e-01, 2.4750e-03, + 2DIAGNOSTIC, 27, -8.305747067214e-01, 1.368070638656e-06, 2.8984e-01, 2.9469e-03, + 2DIAGNOSTIC, 28, -8.305747067214e-01, 1.244995198060e-06, 2.9225e-01, 2.4090e-03, + 2DIAGNOSTIC, 29, -8.305747067214e-01, 1.143315388134e-06, 2.9523e-01, 2.9781e-03, + 2DIAGNOSTIC, 30, -8.305747067214e-01, 1.086586845625e-06, 2.9779e-01, 2.5671e-03, + 2DIAGNOSTIC, 31, -8.305747067214e-01, 1.038751833209e-06, 3.0088e-01, 3.0849e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.209980955691e-01, 1.797693134862e+308, 5.3896e-01, 2.3809e-01, + 2DIAGNOSTIC, 2, -7.217548498480e-01, 1.797693134862e+308, 5.5327e-01, 1.4304e-02, + 2DIAGNOSTIC, 3, -7.222104975025e-01, 1.797693134862e+308, 5.6679e-01, 1.3521e-02, + 2DIAGNOSTIC, 4, -7.227515289833e-01, 1.797693134862e+308, 5.8057e-01, 1.3785e-02, + 2DIAGNOSTIC, 5, -7.238944008449e-01, 1.797693134862e+308, 5.9622e-01, 1.5644e-02, + 2DIAGNOSTIC, 6, -7.255120500149e-01, 1.797693134862e+308, 6.1917e-01, 2.2955e-02, + 2DIAGNOSTIC, 7, -7.255184721769e-01, 1.797693134862e+308, 6.3841e-01, 1.9242e-02, + 2DIAGNOSTIC, 8, -7.255314263771e-01, 1.797693134862e+308, 6.5198e-01, 1.3565e-02, + 2DIAGNOSTIC, 9, -7.255086669566e-01, 1.797693134862e+308, 6.6754e-01, 1.5565e-02, + 2DIAGNOSTIC, 10, -7.254982449319e-01, 4.613552355362e-04, 6.8332e-01, 1.5779e-02, + 2DIAGNOSTIC, 11, -7.254894069950e-01, 3.350353660563e-04, 6.9901e-01, 1.5686e-02, + 2DIAGNOSTIC, 12, -7.254592526944e-01, 2.239787272746e-04, 7.1492e-01, 1.5910e-02, + 2DIAGNOSTIC, 13, -7.254478652891e-01, 1.242220881371e-04, 7.3090e-01, 1.5981e-02, + 2DIAGNOSTIC, 14, -7.254343985241e-01, 4.210070545185e-05, 7.4516e-01, 1.4260e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.067302514597e-01, 1.797693134862e+308, 1.1705e+00, 4.2530e-01, + 2DIAGNOSTIC, 2, -6.072779115856e-01, 1.797693134862e+308, 1.2728e+00, 1.0239e-01, + 2DIAGNOSTIC, 3, -6.074179177377e-01, 1.797693134862e+308, 1.3688e+00, 9.5983e-02, + 2DIAGNOSTIC, 4, -6.075333258259e-01, 1.797693134862e+308, 1.4684e+00, 9.9558e-02, + 2DIAGNOSTIC, 5, -6.076715717380e-01, 1.797693134862e+308, 1.5648e+00, 9.6449e-02, + 2DIAGNOSTIC, 6, -6.077784416080e-01, 1.797693134862e+308, 1.7420e+00, 1.7720e-01, + 2DIAGNOSTIC, 7, -6.077958487295e-01, 1.797693134862e+308, 1.9031e+00, 1.6107e-01, + 2DIAGNOSTIC, 8, -6.077977513498e-01, 1.797693134862e+308, 2.0097e+00, 1.0662e-01, + 2DIAGNOSTIC, 9, -6.077971761745e-01, 1.797693134862e+308, 2.1210e+00, 1.1130e-01, + 2DIAGNOSTIC, 10, -6.077970275909e-01, 9.333898522583e-05, 2.2154e+00, 9.4355e-02, + 2DIAGNOSTIC, 11, -6.077970976575e-01, 4.955982414509e-05, 2.3089e+00, 9.3549e-02, + 2DIAGNOSTIC, 12, -6.077964787489e-01, 3.017672226020e-05, 2.4156e+00, 1.0671e-01, + 2DIAGNOSTIC, 13, -6.077970176383e-01, 1.634897922718e-05, 2.5092e+00, 9.3581e-02, + 2DIAGNOSTIC, 14, -6.077987584166e-01, 7.067943251796e-06, 2.6165e+00, 1.0727e-01, + 2DIAGNOSTIC, 15, -6.077990325735e-01, 2.816676424267e-06, 2.7245e+00, 1.0799e-01, + 2DIAGNOSTIC, 16, -6.077956608252e-01, 2.045191513145e-06, 2.8194e+00, 9.4900e-02, + 2DIAGNOSTIC, 17, -6.077950740209e-01, 1.824042599928e-06, 2.9279e+00, 1.0852e-01, + 2DIAGNOSTIC, 18, -6.077941642683e-01, 1.657226719007e-06, 3.0265e+00, 9.8620e-02, + 2DIAGNOSTIC, 19, -6.077928249418e-01, 1.469268640676e-06, 3.1214e+00, 9.4845e-02, + 2DIAGNOSTIC, 20, -6.077966985299e-01, 1.406725272407e-06, 3.2290e+00, 1.0765e-01, + 2DIAGNOSTIC, 21, -6.077944693974e-01, 1.318513504996e-06, 3.3381e+00, 1.0903e-01, + 2DIAGNOSTIC, 22, -6.077937598846e-01, 1.231079902915e-06, 3.4456e+00, 1.0756e-01, + 2DIAGNOSTIC, 23, -6.077969160084e-01, 1.246049361303e-06, 3.5406e+00, 9.5019e-02, + 2DIAGNOSTIC, 24, -6.077984114453e-01, 1.332153601034e-06, 3.6464e+00, 1.0577e-01, + 2DIAGNOSTIC, 25, -6.078030632872e-01, 1.503026603400e-06, 3.7527e+00, 1.0633e-01, + 2DIAGNOSTIC, 26, -6.078057697106e-01, 1.626142490413e-06, 3.8450e+00, 9.2229e-02, + 2DIAGNOSTIC, 27, -6.078050742217e-01, 1.681480688909e-06, 3.9517e+00, 1.0677e-01, + 2DIAGNOSTIC, 28, -6.078067111430e-01, 1.699570717675e-06, 4.0598e+00, 1.0810e-01, + 2DIAGNOSTIC, 29, -6.078137285840e-01, 1.751302826480e-06, 4.1811e+00, 1.2128e-01, + 2DIAGNOSTIC, 30, -6.078132049982e-01, 1.787146095417e-06, 4.2904e+00, 1.0925e-01, + 2DIAGNOSTIC, 31, -6.078115230076e-01, 1.695129437915e-06, 4.3971e+00, 1.0671e-01, + 2DIAGNOSTIC, 32, -6.078109249463e-01, 1.528640727382e-06, 4.5170e+00, 1.1992e-01, + 2DIAGNOSTIC, 33, -6.078097919814e-01, 1.350141839683e-06, 4.6224e+00, 1.0540e-01, + 2DIAGNOSTIC, 34, -6.078084361677e-01, 1.144154566847e-06, 4.7157e+00, 9.3338e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.230536092100e-01, 1.797693134862e+308, 6.0947e+00, 1.3790e+00, + 2DIAGNOSTIC, 2, -5.230806881025e-01, 1.797693134862e+308, 6.6581e+00, 5.6338e-01, + 2DIAGNOSTIC, 3, -5.231186777142e-01, 1.797693134862e+308, 7.2263e+00, 5.6818e-01, + 2DIAGNOSTIC, 4, -5.231816749030e-01, 1.797693134862e+308, 7.8616e+00, 6.3536e-01, + 2DIAGNOSTIC, 5, -5.231876460804e-01, 1.797693134862e+308, 8.4874e+00, 6.2581e-01, + 2DIAGNOSTIC, 6, -5.231993961495e-01, 1.797693134862e+308, 9.1410e+00, 6.5351e-01, + 2DIAGNOSTIC, 7, -5.232154420924e-01, 1.797693134862e+308, 9.7241e+00, 5.8314e-01, + 2DIAGNOSTIC, 8, -5.232307892803e-01, 1.797693134862e+308, 1.0753e+01, 1.0291e+00, + 2DIAGNOSTIC, 9, -5.232285331307e-01, 1.797693134862e+308, 1.1718e+01, 9.6522e-01, + 2DIAGNOSTIC, 10, -5.232286134715e-01, 2.494278210184e-05, 1.2372e+01, 6.5377e-01, + 2DIAGNOSTIC, 11, -5.232285078967e-01, 1.768515371496e-05, 1.3017e+01, 6.4512e-01, + 2DIAGNOSTIC, 12, -5.232283795340e-01, 1.150200418300e-05, 1.3642e+01, 6.2498e-01, + 2DIAGNOSTIC, 13, -5.232280890782e-01, 6.969057878253e-06, 1.4280e+01, 6.3751e-01, + 2DIAGNOSTIC, 14, -5.232279533127e-01, 5.120583248308e-06, 1.4925e+01, 6.4571e-01, + 2DIAGNOSTIC, 15, -5.232278002072e-01, 3.473340594223e-06, 1.5513e+01, 5.8764e-01, + 2DIAGNOSTIC, 16, -5.232274834843e-01, 2.285574926139e-06, 1.6063e+01, 5.5029e-01, + 2DIAGNOSTIC, 17, -5.232275661523e-01, 1.710943107525e-06, 1.6688e+01, 6.2471e-01, + 2DIAGNOSTIC, 18, -5.232274751165e-01, 1.677234701673e-06, 1.7336e+01, 6.4832e-01, + 2DIAGNOSTIC, 19, -5.232268443377e-01, 1.572791582034e-06, 1.7992e+01, 6.5568e-01, + 2DIAGNOSTIC, 20, -5.232265652511e-01, 1.483352646603e-06, 1.8635e+01, 6.4270e-01, + 2DIAGNOSTIC, 21, -5.232257489312e-01, 1.388638843955e-06, 1.9194e+01, 5.5950e-01, + 2DIAGNOSTIC, 22, -5.232253589818e-01, 1.301867346863e-06, 1.9902e+01, 7.0723e-01, + 2DIAGNOSTIC, 23, -5.232254348659e-01, 1.230991450649e-06, 2.0542e+01, 6.4024e-01, + 2DIAGNOSTIC, 24, -5.232247469735e-01, 1.161498034342e-06, 2.1168e+01, 6.2607e-01, + 2DIAGNOSTIC, 25, -5.232244130584e-01, 1.103096094211e-06, 2.1783e+01, 6.1520e-01, + 2DIAGNOSTIC, 26, -5.232239084450e-01, 1.048060170768e-06, 2.2360e+01, 5.7664e-01, + 2DIAGNOSTIC, 27, -5.232236183026e-01, 1.009432593881e-06, 2.2990e+01, 6.3006e-01, + Elapsed time (stage 0): 2.3368e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.491930307249e-01, 1.797693134862e+308, 1.8276e-01, 1.8276e-01, + 2DIAGNOSTIC, 2, -8.512019760454e-01, 1.797693134862e+308, 1.8475e-01, 1.9908e-03, + 2DIAGNOSTIC, 3, -8.539618105546e-01, 1.797693134862e+308, 1.8663e-01, 1.8828e-03, + 2DIAGNOSTIC, 4, -8.572563474586e-01, 1.797693134862e+308, 1.8850e-01, 1.8661e-03, + 2DIAGNOSTIC, 5, -8.605084034229e-01, 1.797693134862e+308, 1.9035e-01, 1.8449e-03, + 2DIAGNOSTIC, 6, -8.636069604104e-01, 1.797693134862e+308, 1.9259e-01, 2.2440e-03, + 2DIAGNOSTIC, 7, -8.662348513951e-01, 1.797693134862e+308, 1.9489e-01, 2.3010e-03, + 2DIAGNOSTIC, 8, -8.665031296861e-01, 1.797693134862e+308, 1.9905e-01, 4.1640e-03, + 2DIAGNOSTIC, 9, -8.665109366935e-01, 1.797693134862e+308, 2.0131e-01, 2.2540e-03, + 2DIAGNOSTIC, 10, -8.665697406252e-01, 1.465601779447e-03, 2.0368e-01, 2.3739e-03, + 2DIAGNOSTIC, 11, -8.666460410005e-01, 1.089198533287e-03, 2.0598e-01, 2.3022e-03, + 2DIAGNOSTIC, 12, -8.667231939971e-01, 7.347110998670e-04, 2.0832e-01, 2.3348e-03, + 2DIAGNOSTIC, 13, -8.667955087656e-01, 4.403760082549e-04, 2.1141e-01, 3.0930e-03, + 2DIAGNOSTIC, 14, -8.668754347756e-01, 2.276921386565e-04, 2.1441e-01, 3.0010e-03, + 2DIAGNOSTIC, 15, -8.669802233735e-01, 9.550513702655e-05, 2.1748e-01, 3.0639e-03, + 2DIAGNOSTIC, 16, -8.671567570559e-01, 3.726456679103e-05, 2.2130e-01, 3.8228e-03, + 2DIAGNOSTIC, 17, -8.671729102480e-01, 3.367583332656e-05, 2.2468e-01, 3.3760e-03, + 2DIAGNOSTIC, 18, -8.671838928557e-01, 3.271970559982e-05, 2.2821e-01, 3.5379e-03, + 2DIAGNOSTIC, 19, -8.671925079668e-01, 2.930374028080e-05, 2.3051e-01, 2.2960e-03, + 2DIAGNOSTIC, 20, -8.672180367324e-01, 2.500846536315e-05, 2.3299e-01, 2.4750e-03, + 2DIAGNOSTIC, 21, -8.672237014637e-01, 2.016632552800e-05, 2.3512e-01, 2.1319e-03, + 2DIAGNOSTIC, 22, -8.672276563580e-01, 1.523695064683e-05, 2.3729e-01, 2.1770e-03, + 2DIAGNOSTIC, 23, -8.672356719990e-01, 1.062481151454e-05, 2.3949e-01, 2.1980e-03, + 2DIAGNOSTIC, 24, -8.672593542784e-01, 6.938908310820e-06, 2.4165e-01, 2.1598e-03, + 2DIAGNOSTIC, 25, -8.672991932147e-01, 4.849724822752e-06, 2.4427e-01, 2.6228e-03, + 2DIAGNOSTIC, 26, -8.673191903834e-01, 5.056849492403e-06, 2.4926e-01, 4.9870e-03, + 2DIAGNOSTIC, 27, -8.673192007917e-01, 5.089375496536e-06, 2.5141e-01, 2.1460e-03, + 2DIAGNOSTIC, 28, -8.673194936654e-01, 4.892859492060e-06, 2.5354e-01, 2.1350e-03, + 2DIAGNOSTIC, 29, -8.673199359739e-01, 4.448398123899e-06, 2.5567e-01, 2.1319e-03, + 2DIAGNOSTIC, 30, -8.673205725878e-01, 3.994643315235e-06, 2.5779e-01, 2.1160e-03, + 2DIAGNOSTIC, 31, -8.673213227035e-01, 3.359466894323e-06, 2.5993e-01, 2.1381e-03, + 2DIAGNOSTIC, 32, -8.673220658117e-01, 2.597915851332e-06, 2.6236e-01, 2.4350e-03, + 2DIAGNOSTIC, 33, -8.673225089004e-01, 1.816181989460e-06, 2.6499e-01, 2.6309e-03, + 2DIAGNOSTIC, 34, -8.673225542433e-01, 1.220423940212e-06, 2.6745e-01, 2.4540e-03, + 2DIAGNOSTIC, 35, -8.673225751719e-01, 1.000745991624e-06, 2.6991e-01, 2.4629e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.132547480804e-01, 1.797693134862e+308, 4.8193e-01, 2.1202e-01, + 2DIAGNOSTIC, 2, -7.148896565154e-01, 1.797693134862e+308, 4.9601e-01, 1.4072e-02, + 2DIAGNOSTIC, 3, -7.166985843040e-01, 1.797693134862e+308, 5.1071e-01, 1.4705e-02, + 2DIAGNOSTIC, 4, -7.185046278361e-01, 1.797693134862e+308, 5.2455e-01, 1.3844e-02, + 2DIAGNOSTIC, 5, -7.200278871467e-01, 1.797693134862e+308, 5.4050e-01, 1.5948e-02, + 2DIAGNOSTIC, 6, -7.211631521305e-01, 1.797693134862e+308, 5.6787e-01, 2.7365e-02, + 2DIAGNOSTIC, 7, -7.211688346936e-01, 1.797693134862e+308, 5.8240e-01, 1.4537e-02, + 2DIAGNOSTIC, 8, -7.211923505795e-01, 1.797693134862e+308, 5.9712e-01, 1.4712e-02, + 2DIAGNOSTIC, 9, -7.212294171930e-01, 1.797693134862e+308, 6.1179e-01, 1.4671e-02, + 2DIAGNOSTIC, 10, -7.212845960119e-01, 7.208749102343e-04, 6.2679e-01, 1.5007e-02, + 2DIAGNOSTIC, 11, -7.213469866990e-01, 4.671214702543e-04, 6.4205e-01, 1.5252e-02, + 2DIAGNOSTIC, 12, -7.214530949486e-01, 2.711472160435e-04, 6.5663e-01, 1.4579e-02, + 2DIAGNOSTIC, 13, -7.215810395911e-01, 1.395050022059e-04, 6.7327e-01, 1.6649e-02, + 2DIAGNOSTIC, 14, -7.217909927038e-01, 7.023144825624e-05, 6.9876e-01, 2.5485e-02, + 2DIAGNOSTIC, 15, -7.217959987789e-01, 4.329286512135e-05, 7.1571e-01, 1.6955e-02, + 2DIAGNOSTIC, 16, -7.218059897664e-01, 4.429972553718e-05, 7.3028e-01, 1.4570e-02, + 2DIAGNOSTIC, 17, -7.218149492377e-01, 4.166519361812e-05, 7.4775e-01, 1.7469e-02, + 2DIAGNOSTIC, 18, -7.218254173078e-01, 3.633282400332e-05, 7.6194e-01, 1.4185e-02, + 2DIAGNOSTIC, 19, -7.218244325170e-01, 2.904422274599e-05, 7.7589e-01, 1.3955e-02, + 2DIAGNOSTIC, 20, -7.218477778676e-01, 2.151139135780e-05, 7.8968e-01, 1.3790e-02, + 2DIAGNOSTIC, 21, -7.218787982232e-01, 1.461939252425e-05, 8.0371e-01, 1.4028e-02, + 2DIAGNOSTIC, 22, -7.219164896566e-01, 9.676233896867e-06, 8.1768e-01, 1.3969e-02, + 2DIAGNOSTIC, 23, -7.219538156841e-01, 7.119811600814e-06, 8.3314e-01, 1.5463e-02, + 2DIAGNOSTIC, 24, -7.219866274939e-01, 8.227312991153e-06, 8.4781e-01, 1.4667e-02, + 2DIAGNOSTIC, 25, -7.220016092383e-01, 8.907385007702e-06, 8.6443e-01, 1.6619e-02, + 2DIAGNOSTIC, 26, -7.219983177809e-01, 8.913921420307e-06, 8.8669e-01, 2.2265e-02, + 2DIAGNOSTIC, 27, -7.220370281456e-01, 8.891786473515e-06, 9.0220e-01, 1.5507e-02, + 2DIAGNOSTIC, 28, -7.220394092161e-01, 8.311030087950e-06, 9.1697e-01, 1.4768e-02, + 2DIAGNOSTIC, 29, -7.220430650970e-01, 7.128133125679e-06, 9.3172e-01, 1.4755e-02, + 2DIAGNOSTIC, 30, -7.220614739957e-01, 6.007654001196e-06, 9.5541e-01, 2.3686e-02, + 2DIAGNOSTIC, 31, -7.220621369621e-01, 4.885651395586e-06, 9.7039e-01, 1.4983e-02, + 2DIAGNOSTIC, 32, -7.220631972962e-01, 3.935648372894e-06, 9.8545e-01, 1.5061e-02, + 2DIAGNOSTIC, 33, -7.220647253511e-01, 3.219784957258e-06, 1.0000e+00, 1.4595e-02, + 2DIAGNOSTIC, 34, -7.220675153012e-01, 2.744840787165e-06, 1.0153e+00, 1.5267e-02, + 2DIAGNOSTIC, 35, -7.220694914138e-01, 2.318850297566e-06, 1.0323e+00, 1.6941e-02, + 2DIAGNOSTIC, 36, -7.221489159366e-01, 2.604005965814e-06, 1.0627e+00, 3.0414e-02, + 2DIAGNOSTIC, 37, -7.221248968769e-01, 2.845832409708e-06, 1.0794e+00, 1.6756e-02, + 2DIAGNOSTIC, 38, -7.221156873330e-01, 2.833347513286e-06, 1.0963e+00, 1.6839e-02, + 2DIAGNOSTIC, 39, -7.221050069841e-01, 2.567515805595e-06, 1.1106e+00, 1.4325e-02, + 2DIAGNOSTIC, 40, -7.220908846744e-01, 2.185127461918e-06, 1.1256e+00, 1.5007e-02, + 2DIAGNOSTIC, 41, -7.220750202346e-01, 1.532226581578e-06, 1.1443e+00, 1.8729e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.079967719075e-01, 1.797693134862e+308, 1.5705e+00, 4.2616e-01, + 2DIAGNOSTIC, 2, -6.087006521863e-01, 1.797693134862e+308, 1.6737e+00, 1.0319e-01, + 2DIAGNOSTIC, 3, -6.089598327550e-01, 1.797693134862e+308, 1.7777e+00, 1.0403e-01, + 2DIAGNOSTIC, 4, -6.091192757585e-01, 1.797693134862e+308, 1.8960e+00, 1.1831e-01, + 2DIAGNOSTIC, 5, -6.093483662144e-01, 1.797693134862e+308, 2.0252e+00, 1.2914e-01, + 2DIAGNOSTIC, 6, -6.094083598876e-01, 1.797693134862e+308, 2.1422e+00, 1.1702e-01, + 2DIAGNOSTIC, 7, -6.094129252288e-01, 1.797693134862e+308, 2.2434e+00, 1.0118e-01, + 2DIAGNOSTIC, 8, -6.094250758908e-01, 1.797693134862e+308, 2.3446e+00, 1.0128e-01, + 2DIAGNOSTIC, 9, -6.094416471543e-01, 1.797693134862e+308, 2.4445e+00, 9.9878e-02, + 2DIAGNOSTIC, 10, -6.094605851768e-01, 1.237843455879e-04, 2.5597e+00, 1.1523e-01, + 2DIAGNOSTIC, 11, -6.094627321061e-01, 6.492242616826e-05, 2.7180e+00, 1.5828e-01, + 2DIAGNOSTIC, 12, -6.094634851557e-01, 3.764340760548e-05, 2.8355e+00, 1.1748e-01, + 2DIAGNOSTIC, 13, -6.094635158306e-01, 2.067704924440e-05, 2.9405e+00, 1.0498e-01, + 2DIAGNOSTIC, 14, -6.094636406412e-01, 9.592786560320e-06, 3.0429e+00, 1.0246e-01, + 2DIAGNOSTIC, 15, -6.094640443960e-01, 6.398537820362e-06, 3.1445e+00, 1.0159e-01, + 2DIAGNOSTIC, 16, -6.094653376092e-01, 5.003196240888e-06, 3.2467e+00, 1.0217e-01, + 2DIAGNOSTIC, 17, -6.094661835859e-01, 3.646046477103e-06, 3.6114e+00, 3.6472e-01, + 2DIAGNOSTIC, 18, -6.094661835670e-01, 2.585074646490e-06, 3.9770e+00, 3.6559e-01, + 2DIAGNOSTIC, 19, -6.094661835670e-01, 1.955195285626e-06, 4.0940e+00, 1.1694e-01, + 2DIAGNOSTIC, 20, -6.094661835670e-01, 1.802771146510e-06, 4.2112e+00, 1.1721e-01, + 2DIAGNOSTIC, 21, -6.094661835670e-01, 1.691806344156e-06, 4.3407e+00, 1.2950e-01, + 2DIAGNOSTIC, 22, -6.094661835670e-01, 1.590152300536e-06, 4.4578e+00, 1.1716e-01, + 2DIAGNOSTIC, 23, -6.094661835670e-01, 1.484889795393e-06, 4.5742e+00, 1.1634e-01, + 2DIAGNOSTIC, 24, -6.094661835670e-01, 1.381657292077e-06, 4.7038e+00, 1.2964e-01, + 2DIAGNOSTIC, 25, -6.094661835670e-01, 1.288464069799e-06, 4.8182e+00, 1.1437e-01, + 2DIAGNOSTIC, 26, -6.094661835670e-01, 1.223721008081e-06, 4.9485e+00, 1.3027e-01, + 2DIAGNOSTIC, 27, -6.094661835670e-01, 1.178388960479e-06, 5.0636e+00, 1.1519e-01, + 2DIAGNOSTIC, 28, -6.094661835670e-01, 1.136295247291e-06, 5.2071e+00, 1.4349e-01, + 2DIAGNOSTIC, 29, -6.094661835670e-01, 1.097105107747e-06, 5.3395e+00, 1.3239e-01, + 2DIAGNOSTIC, 30, -6.094661835670e-01, 1.060528130467e-06, 5.4676e+00, 1.2809e-01, + 2DIAGNOSTIC, 31, -6.094661835670e-01, 1.026311383240e-06, 5.5840e+00, 1.1638e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.223278655056e-01, 1.797693134862e+308, 6.9184e+00, 1.3344e+00, + 2DIAGNOSTIC, 2, -5.225158851705e-01, 1.797693134862e+308, 7.5986e+00, 6.8021e-01, + 2DIAGNOSTIC, 3, -5.225928320127e-01, 1.797693134862e+308, 8.2150e+00, 6.1638e-01, + 2DIAGNOSTIC, 4, -5.230413007037e-01, 1.797693134862e+308, 8.8253e+00, 6.1027e-01, + 2DIAGNOSTIC, 5, -5.247517505400e-01, 1.797693134862e+308, 1.0272e+01, 1.4465e+00, + 2DIAGNOSTIC, 6, -5.247518851573e-01, 1.797693134862e+308, 1.1426e+01, 1.1541e+00, + 2DIAGNOSTIC, 7, -5.247514770415e-01, 1.797693134862e+308, 1.2383e+01, 9.5769e-01, + 2DIAGNOSTIC, 8, -5.247513751172e-01, 1.797693134862e+308, 1.3083e+01, 6.9936e-01, + 2DIAGNOSTIC, 9, -5.247512893427e-01, 1.797693134862e+308, 1.3743e+01, 6.6012e-01, + 2DIAGNOSTIC, 10, -5.247510053098e-01, 3.661036349642e-04, 1.4337e+01, 5.9403e-01, + 2DIAGNOSTIC, 11, -5.247509689867e-01, 2.652726404259e-04, 1.4955e+01, 6.1757e-01, + 2DIAGNOSTIC, 12, -5.247508795106e-01, 1.676460487670e-04, 1.5645e+01, 6.9070e-01, + 2DIAGNOSTIC, 13, -5.247506036502e-01, 7.368426068007e-05, 1.6336e+01, 6.9030e-01, + 2DIAGNOSTIC, 14, -5.247504798665e-01, 2.156793109845e-06, 1.7089e+01, 7.5326e-01, + 2DIAGNOSTIC, 15, -5.247503184666e-01, 2.008130328648e-06, 1.7798e+01, 7.0919e-01, + 2DIAGNOSTIC, 16, -5.247501482196e-01, 1.887720971178e-06, 1.8426e+01, 6.2786e-01, + 2DIAGNOSTIC, 17, -5.247499891310e-01, 1.772858298284e-06, 1.9106e+01, 6.7995e-01, + 2DIAGNOSTIC, 18, -5.247498416995e-01, 1.672620467116e-06, 1.9766e+01, 6.6060e-01, + 2DIAGNOSTIC, 19, -5.247498806306e-01, 1.590791060553e-06, 2.0375e+01, 6.0830e-01, + 2DIAGNOSTIC, 20, -5.247497600420e-01, 1.513901250708e-06, 2.0987e+01, 6.1201e-01, + 2DIAGNOSTIC, 21, -5.247496849964e-01, 1.448793393422e-06, 2.1575e+01, 5.8790e-01, + 2DIAGNOSTIC, 22, -5.247496869559e-01, 1.393942341173e-06, 2.2165e+01, 5.9004e-01, + 2DIAGNOSTIC, 23, -5.247498187189e-01, 1.345402554503e-06, 2.2853e+01, 6.8841e-01, + 2DIAGNOSTIC, 24, -5.247497267542e-01, 1.299553277732e-06, 2.3506e+01, 6.5329e-01, + 2DIAGNOSTIC, 25, -5.247496887399e-01, 1.255715017787e-06, 2.4181e+01, 6.7474e-01, + 2DIAGNOSTIC, 26, -5.247493459717e-01, 1.206355859304e-06, 2.4882e+01, 7.0049e-01, + 2DIAGNOSTIC, 27, -5.247494857479e-01, 1.162157437895e-06, 2.5505e+01, 6.2327e-01, + 2DIAGNOSTIC, 28, -5.247493492990e-01, 1.116919183627e-06, 2.6364e+01, 8.5897e-01, + 2DIAGNOSTIC, 29, -5.247494289007e-01, 1.078958734156e-06, 2.6984e+01, 6.2022e-01, + 2DIAGNOSTIC, 30, -5.247491907138e-01, 1.038893218334e-06, 2.7695e+01, 7.1128e-01, + 2DIAGNOSTIC, 31, -5.247491033696e-01, 1.000850623364e-06, 2.8278e+01, 5.8227e-01, + Elapsed time (stage 1): 2.8653e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.401444742595e-01, 1.797693134862e+308, 2.5799e-01, 2.5799e-01, + 1DIAGNOSTIC, 2, -9.491940817942e-01, 1.797693134862e+308, 3.5505e-01, 9.7060e-02, + 1DIAGNOSTIC, 3, -9.551560981318e-01, 1.797693134862e+308, 4.5714e-01, 1.0208e-01, + 1DIAGNOSTIC, 4, -9.587396511495e-01, 1.797693134862e+308, 5.5015e-01, 9.3008e-02, + 1DIAGNOSTIC, 5, -9.608576600486e-01, 1.797693134862e+308, 6.5066e-01, 1.0052e-01, + 1DIAGNOSTIC, 6, -9.626334696871e-01, 1.797693134862e+308, 7.5131e-01, 1.0065e-01, + 1DIAGNOSTIC, 7, -9.639714442437e-01, 1.797693134862e+308, 8.5442e-01, 1.0310e-01, + 1DIAGNOSTIC, 8, -9.649484128384e-01, 1.797693134862e+308, 9.5566e-01, 1.0125e-01, + 1DIAGNOSTIC, 9, -9.657256391662e-01, 1.797693134862e+308, 1.0546e+00, 9.8953e-02, + 1DIAGNOSTIC, 10, -9.657763068132e-01, 1.476091627228e-03, 1.1554e+00, 1.0075e-01, + 1DIAGNOSTIC, 11, -9.662873383172e-01, 9.025664905154e-04, 1.2523e+00, 9.6928e-02, + 1DIAGNOSTIC, 12, -9.660326890995e-01, 5.584920105079e-04, 1.3491e+00, 9.6758e-02, + 1DIAGNOSTIC, 13, -9.665506845588e-01, 3.636597961155e-04, 1.4476e+00, 9.8546e-02, + 1DIAGNOSTIC, 14, -9.662947444934e-01, 2.334087267890e-04, 1.5438e+00, 9.6153e-02, + 1DIAGNOSTIC, 15, -9.666704286522e-01, 1.483745718694e-04, 1.6391e+00, 9.5314e-02, + 1DIAGNOSTIC, 16, -9.665454800425e-01, 9.061449407935e-05, 1.7375e+00, 9.8426e-02, + 1DIAGNOSTIC, 17, -9.668682650161e-01, 6.015650195267e-05, 1.8396e+00, 1.0209e-01, + 1DIAGNOSTIC, 18, -9.668670210572e-01, 4.332239848392e-05, 1.9432e+00, 1.0361e-01, + 1DIAGNOSTIC, 19, -9.670778087239e-01, 3.982772180823e-05, 2.0396e+00, 9.6441e-02, + 1DIAGNOSTIC, 20, -9.670315261010e-01, 3.298426939724e-05, 2.1340e+00, 9.4343e-02, + 1DIAGNOSTIC, 21, -9.671817105396e-01, 3.334402006711e-05, 2.2317e+00, 9.7739e-02, + 1DIAGNOSTIC, 22, -9.671631268447e-01, 2.679105218521e-05, 2.3280e+00, 9.6241e-02, + 1DIAGNOSTIC, 23, -9.672626432594e-01, 2.648234109786e-05, 2.4233e+00, 9.5343e-02, + 1DIAGNOSTIC, 24, -9.672832408375e-01, 2.081943961397e-05, 2.5224e+00, 9.9134e-02, + 1DIAGNOSTIC, 25, -9.673422306732e-01, 1.899455661939e-05, 2.6171e+00, 9.4664e-02, + 1DIAGNOSTIC, 26, -9.673827010167e-01, 1.459615680185e-05, 2.7097e+00, 9.2559e-02, + 1DIAGNOSTIC, 27, -9.674106328135e-01, 1.310773060335e-05, 2.8038e+00, 9.4168e-02, + 1DIAGNOSTIC, 28, -9.674654104121e-01, 1.111031868562e-05, 2.9027e+00, 9.8897e-02, + 1DIAGNOSTIC, 29, -9.674917123348e-01, 1.073309950933e-05, 3.0027e+00, 1.0001e-01, + 1DIAGNOSTIC, 30, -9.675380900714e-01, 9.434287030465e-06, 3.1074e+00, 1.0462e-01, + 1DIAGNOSTIC, 31, -9.675281527868e-01, 8.769615308685e-06, 3.2040e+00, 9.6624e-02, + 1DIAGNOSTIC, 32, -9.675710229309e-01, 7.625813754138e-06, 3.2981e+00, 9.4093e-02, + 1DIAGNOSTIC, 33, -9.675685386557e-01, 6.780936508230e-06, 3.3954e+00, 9.7326e-02, + 1DIAGNOSTIC, 34, -9.676138794997e-01, 5.995428467211e-06, 3.4916e+00, 9.6175e-02, + 1DIAGNOSTIC, 35, -9.676074800911e-01, 5.205345179522e-06, 3.5855e+00, 9.3937e-02, + 1DIAGNOSTIC, 36, -9.676515977719e-01, 4.749755883233e-06, 3.6789e+00, 9.3376e-02, + 1DIAGNOSTIC, 37, -9.675975923264e-01, 3.729525872062e-06, 3.7763e+00, 9.7397e-02, + 1DIAGNOSTIC, 38, -9.676370590462e-01, 3.230803454671e-06, 3.8769e+00, 1.0066e-01, + 1DIAGNOSTIC, 39, -9.676270437242e-01, 2.633628346398e-06, 3.9750e+00, 9.8067e-02, + 1DIAGNOSTIC, 40, -9.676309565975e-01, 2.266539629512e-06, 4.0754e+00, 1.0039e-01, + 1DIAGNOSTIC, 41, -9.675779519713e-01, 1.320661902424e-06, 4.1742e+00, 9.8748e-02, + 1DIAGNOSTIC, 42, -9.675829684485e-01, 7.214302231578e-07, 4.2676e+00, 9.3470e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.234180224186e-01, 1.797693134862e+308, 5.1027e+00, 8.3509e-01, + 1DIAGNOSTIC, 2, -9.283675385086e-01, 1.797693134862e+308, 5.7725e+00, 6.6974e-01, + 1DIAGNOSTIC, 3, -9.323739557878e-01, 1.797693134862e+308, 6.4477e+00, 6.7520e-01, + 1DIAGNOSTIC, 4, -9.357392083305e-01, 1.797693134862e+308, 7.1148e+00, 6.6718e-01, + 1DIAGNOSTIC, 5, -9.386114701807e-01, 1.797693134862e+308, 7.7794e+00, 6.6459e-01, + 1DIAGNOSTIC, 6, -9.406206499420e-01, 1.797693134862e+308, 8.4394e+00, 6.5995e-01, + 1DIAGNOSTIC, 7, -9.423706519323e-01, 1.797693134862e+308, 9.0963e+00, 6.5689e-01, + 1DIAGNOSTIC, 8, -9.438160972838e-01, 1.797693134862e+308, 9.7587e+00, 6.6248e-01, + 1DIAGNOSTIC, 9, -9.449343579929e-01, 1.797693134862e+308, 1.0431e+01, 6.7203e-01, + 1DIAGNOSTIC, 10, -9.458765028993e-01, 1.470071288465e-03, 1.1104e+01, 6.7298e-01, + 1DIAGNOSTIC, 11, -9.466945052249e-01, 1.084853275342e-03, 1.1772e+01, 6.6838e-01, + 1DIAGNOSTIC, 12, -9.474094856840e-01, 8.086096458112e-04, 1.2444e+01, 6.7218e-01, + 1DIAGNOSTIC, 13, -9.479683442261e-01, 6.072742601351e-04, 1.3115e+01, 6.7030e-01, + 1DIAGNOSTIC, 14, -9.484591834888e-01, 4.621414402855e-04, 1.3790e+01, 6.7546e-01, + 1DIAGNOSTIC, 15, -9.489007725669e-01, 3.606284107262e-04, 1.4459e+01, 6.6876e-01, + 1DIAGNOSTIC, 16, -9.492927915846e-01, 2.837339892760e-04, 1.5121e+01, 6.6244e-01, + 1DIAGNOSTIC, 17, -9.496518558120e-01, 2.269649269608e-04, 1.5791e+01, 6.6980e-01, + 1DIAGNOSTIC, 18, -9.499769417502e-01, 1.850972195905e-04, 1.6470e+01, 6.7881e-01, + 1DIAGNOSTIC, 19, -9.502632186760e-01, 1.527139859788e-04, 1.7148e+01, 6.7765e-01, + 1DIAGNOSTIC, 20, -9.505285415581e-01, 1.275289674398e-04, 1.7824e+01, 6.7670e-01, + 1DIAGNOSTIC, 21, -9.507705747938e-01, 1.080315752038e-04, 1.8484e+01, 6.5962e-01, + 1DIAGNOSTIC, 22, -9.509903007432e-01, 9.302292586817e-05, 1.9146e+01, 6.6241e-01, + 1DIAGNOSTIC, 23, -9.511933595520e-01, 8.061225062921e-05, 1.9822e+01, 6.7556e-01, + 1DIAGNOSTIC, 24, -9.513756133437e-01, 7.015270946920e-05, 2.0489e+01, 6.6730e-01, + 1DIAGNOSTIC, 25, -9.515394873298e-01, 6.127254098864e-05, 2.1182e+01, 6.9269e-01, + 1DIAGNOSTIC, 26, -9.516900617203e-01, 5.363594618549e-05, 2.1884e+01, 7.0245e-01, + 1DIAGNOSTIC, 27, -9.518224788288e-01, 4.703625104893e-05, 2.2553e+01, 6.6904e-01, + 1DIAGNOSTIC, 28, -9.519533086043e-01, 4.142426158416e-05, 2.3216e+01, 6.6280e-01, + 1DIAGNOSTIC, 29, -9.520738604891e-01, 3.655933651318e-05, 2.3883e+01, 6.6685e-01, + 1DIAGNOSTIC, 30, -9.521857684030e-01, 3.239940447662e-05, 2.4558e+01, 6.7538e-01, + 1DIAGNOSTIC, 31, -9.522891642886e-01, 2.885078168563e-05, 2.5223e+01, 6.6474e-01, + 1DIAGNOSTIC, 32, -9.523863207753e-01, 2.582696254774e-05, 2.5887e+01, 6.6347e-01, + 1DIAGNOSTIC, 33, -9.524717417921e-01, 2.322436832999e-05, 2.6553e+01, 6.6598e-01, + 1DIAGNOSTIC, 34, -9.525524905140e-01, 2.095656459231e-05, 2.7226e+01, 6.7380e-01, + 1DIAGNOSTIC, 35, -9.526322267836e-01, 1.898066771085e-05, 2.7897e+01, 6.7087e-01, + 1DIAGNOSTIC, 36, -9.526991876154e-01, 1.718811598143e-05, 2.8564e+01, 6.6716e-01, + 1DIAGNOSTIC, 37, -9.527691663471e-01, 1.556325163877e-05, 2.9282e+01, 7.1755e-01, + 1DIAGNOSTIC, 38, -9.528371567456e-01, 1.417505522727e-05, 2.9955e+01, 6.7279e-01, + 1DIAGNOSTIC, 39, -9.529000686373e-01, 1.298059166072e-05, 3.0638e+01, 6.8368e-01, + 1DIAGNOSTIC, 40, -9.529600427447e-01, 1.195920535127e-05, 3.1357e+01, 7.1878e-01, + 1DIAGNOSTIC, 41, -9.530164465089e-01, 1.107729675056e-05, 3.2023e+01, 6.6594e-01, + 1DIAGNOSTIC, 42, -9.530700121537e-01, 1.031805837532e-05, 3.2685e+01, 6.6237e-01, + 1DIAGNOSTIC, 43, -9.531210337018e-01, 9.620157010715e-06, 3.3365e+01, 6.7991e-01, + 1DIAGNOSTIC, 44, -9.531683924731e-01, 8.966323725892e-06, 3.4036e+01, 6.7077e-01, + 1DIAGNOSTIC, 45, -9.532124292686e-01, 8.369451354122e-06, 3.4711e+01, 6.7496e-01, + 1DIAGNOSTIC, 46, -9.532640837480e-01, 7.829486851900e-06, 3.5411e+01, 6.9946e-01, + 1DIAGNOSTIC, 47, -9.533060748449e-01, 7.332698332984e-06, 3.6126e+01, 7.1544e-01, + 1DIAGNOSTIC, 48, -9.533463382431e-01, 6.887430665639e-06, 3.6817e+01, 6.9138e-01, + 1DIAGNOSTIC, 49, -9.533847550061e-01, 6.476961958234e-06, 3.7487e+01, 6.6985e-01, + 1DIAGNOSTIC, 50, -9.534230936165e-01, 6.106587642642e-06, 3.8162e+01, 6.7524e-01, + 1DIAGNOSTIC, 51, -9.534583149661e-01, 5.756896090236e-06, 3.8833e+01, 6.7008e-01, + 1DIAGNOSTIC, 52, -9.534931572598e-01, 5.431165020844e-06, 3.9538e+01, 7.0537e-01, + 1DIAGNOSTIC, 53, -9.535253647305e-01, 5.120676839727e-06, 4.0225e+01, 6.8661e-01, + 1DIAGNOSTIC, 54, -9.535569969924e-01, 4.821490121473e-06, 4.0922e+01, 6.9798e-01, + 1DIAGNOSTIC, 55, -9.535963658825e-01, 4.574615440692e-06, 4.1583e+01, 6.6063e-01, + 1DIAGNOSTIC, 56, -9.536253613776e-01, 4.377816165517e-06, 4.2249e+01, 6.6635e-01, + 1DIAGNOSTIC, 57, -9.536540902581e-01, 4.189602055189e-06, 4.2923e+01, 6.7370e-01, + 1DIAGNOSTIC, 58, -9.536810961186e-01, 4.002695234304e-06, 4.3596e+01, 6.7288e-01, + 1DIAGNOSTIC, 59, -9.537067235963e-01, 3.810781717274e-06, 4.4262e+01, 6.6575e-01, + 1DIAGNOSTIC, 60, -9.537319058446e-01, 3.623243406237e-06, 4.4920e+01, 6.5829e-01, + 1DIAGNOSTIC, 61, -9.537571650159e-01, 3.437269797530e-06, 4.5586e+01, 6.6601e-01, + 1DIAGNOSTIC, 62, -9.537806309595e-01, 3.255494658971e-06, 4.6256e+01, 6.7024e-01, + 1DIAGNOSTIC, 63, -9.538035034619e-01, 3.074621974745e-06, 4.6913e+01, 6.5661e-01, + 1DIAGNOSTIC, 64, -9.538247451921e-01, 2.895204441834e-06, 4.7582e+01, 6.6916e-01, + 1DIAGNOSTIC, 65, -9.538460491220e-01, 2.767036282537e-06, 4.8253e+01, 6.7128e-01, + 1DIAGNOSTIC, 66, -9.538665051759e-01, 2.644682025505e-06, 4.8921e+01, 6.6773e-01, + 1DIAGNOSTIC, 67, -9.538894944431e-01, 2.545984756585e-06, 4.9588e+01, 6.6693e-01, + 1DIAGNOSTIC, 68, -9.539089726921e-01, 2.452462960038e-06, 5.0263e+01, 6.7474e-01, + 1DIAGNOSTIC, 69, -9.539279721131e-01, 2.361800022006e-06, 5.0935e+01, 6.7193e-01, + 1DIAGNOSTIC, 70, -9.539459061936e-01, 2.272666701629e-06, 5.1594e+01, 6.5973e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.026228425730e-01, 1.797693134862e+308, 5.7260e+01, 5.6652e+00, + 1DIAGNOSTIC, 2, -9.064477133764e-01, 1.797693134862e+308, 6.2684e+01, 5.4242e+00, + 1DIAGNOSTIC, 3, -9.098354354954e-01, 1.797693134862e+308, 6.8212e+01, 5.5285e+00, + 1DIAGNOSTIC, 4, -9.128025405931e-01, 1.797693134862e+308, 7.3652e+01, 5.4402e+00, + 1DIAGNOSTIC, 5, -9.153628546513e-01, 1.797693134862e+308, 7.9101e+01, 5.4489e+00, + 1DIAGNOSTIC, 6, -9.176539040882e-01, 1.797693134862e+308, 8.4519e+01, 5.4178e+00, + 1DIAGNOSTIC, 7, -9.197583475635e-01, 1.797693134862e+308, 9.0033e+01, 5.5143e+00, + 1DIAGNOSTIC, 8, -9.217636632515e-01, 1.797693134862e+308, 9.5448e+01, 5.4149e+00, + 1DIAGNOSTIC, 9, -9.237359049473e-01, 1.797693134862e+308, 1.0088e+02, 5.4311e+00, + 1DIAGNOSTIC, 10, -9.257252259444e-01, 1.561673755442e-03, 1.0630e+02, 5.4174e+00, + 1DIAGNOSTIC, 11, -9.276901814025e-01, 1.303287456959e-03, 1.1182e+02, 5.5281e+00, + 1DIAGNOSTIC, 12, -9.293971344958e-01, 1.112727068261e-03, 1.1728e+02, 5.4584e+00, + 1DIAGNOSTIC, 13, -9.308323532510e-01, 9.649628118734e-04, 1.2275e+02, 5.4697e+00, + 1DIAGNOSTIC, 14, -9.319398925668e-01, 8.400380702357e-04, 1.2820e+02, 5.4476e+00, + 1DIAGNOSTIC, 15, -9.329087669853e-01, 7.272801912009e-04, 1.3371e+02, 5.5101e+00, + 1DIAGNOSTIC, 16, -9.336340059805e-01, 6.196655791486e-04, 1.3914e+02, 5.4285e+00, + 1DIAGNOSTIC, 17, -9.343718227792e-01, 5.189447459840e-04, 1.4460e+02, 5.4653e+00, + 1DIAGNOSTIC, 18, -9.348608567140e-01, 4.239441918705e-04, 1.5006e+02, 5.4511e+00, + 1DIAGNOSTIC, 19, -9.354063952290e-01, 3.403157871123e-04, 1.5555e+02, 5.4957e+00, + 1DIAGNOSTIC, 20, -9.357470099619e-01, 2.690182300506e-04, 1.6098e+02, 5.4297e+00, + 1DIAGNOSTIC, 21, -9.361776773003e-01, 2.143523694265e-04, 1.6644e+02, 5.4600e+00, + 1DIAGNOSTIC, 22, -9.364297141979e-01, 1.718104203398e-04, 1.7193e+02, 5.4906e+00, + 1DIAGNOSTIC, 23, -9.367921841610e-01, 1.408371201679e-04, 1.7788e+02, 5.9489e+00, + 1DIAGNOSTIC, 24, -9.369884114667e-01, 1.158274677535e-04, 1.8346e+02, 5.5808e+00, + 1DIAGNOSTIC, 25, -9.371781182617e-01, 9.617986425389e-05, 1.8902e+02, 5.5610e+00, + 1DIAGNOSTIC, 26, -9.373677451697e-01, 7.977238659224e-05, 1.9464e+02, 5.6131e+00, + 1DIAGNOSTIC, 27, -9.375659716734e-01, 6.771932904260e-05, 2.0022e+02, 5.5835e+00, + 1DIAGNOSTIC, 28, -9.377771062067e-01, 5.778509122202e-05, 2.0577e+02, 5.5544e+00, + 1DIAGNOSTIC, 29, -9.380089520058e-01, 5.133623039193e-05, 2.1137e+02, 5.5957e+00, + 1DIAGNOSTIC, 30, -9.382558456089e-01, 4.647718703737e-05, 2.1695e+02, 5.5825e+00, + 1DIAGNOSTIC, 31, -9.384930282425e-01, 4.417908175269e-05, 2.2252e+02, 5.5645e+00, + 1DIAGNOSTIC, 32, -9.387060946504e-01, 4.229098145488e-05, 2.2808e+02, 5.5618e+00, + 1DIAGNOSTIC, 33, -9.388967951089e-01, 4.168615918611e-05, 2.3365e+02, 5.5703e+00, + 1DIAGNOSTIC, 34, -9.390676073244e-01, 4.051190730101e-05, 2.3930e+02, 5.6567e+00, + 1DIAGNOSTIC, 35, -9.392173000704e-01, 3.856951354675e-05, 2.4491e+02, 5.6101e+00, + 1DIAGNOSTIC, 36, -9.393545330818e-01, 3.589455126569e-05, 2.5047e+02, 5.5569e+00, + 1DIAGNOSTIC, 37, -9.394787627015e-01, 3.266582093429e-05, 2.5611e+02, 5.6358e+00, + 1DIAGNOSTIC, 38, -9.395910000404e-01, 2.914782602417e-05, 2.6199e+02, 5.8787e+00, + 1DIAGNOSTIC, 39, -9.396930360910e-01, 2.569426952293e-05, 2.6754e+02, 5.5582e+00, + 1DIAGNOSTIC, 40, -9.397862072208e-01, 2.260513227966e-05, 2.7308e+02, 5.5319e+00, + 1DIAGNOSTIC, 41, -9.398715258544e-01, 1.995846891647e-05, 2.7864e+02, 5.5609e+00, + 1DIAGNOSTIC, 42, -9.399492077780e-01, 1.769365426646e-05, 2.8420e+02, 5.5603e+00, + 1DIAGNOSTIC, 43, -9.400196945785e-01, 1.574739551921e-05, 2.8975e+02, 5.5577e+00, + 1DIAGNOSTIC, 44, -9.400844297249e-01, 1.406976266069e-05, 2.9530e+02, 5.5425e+00, + 1DIAGNOSTIC, 45, -9.401433831471e-01, 1.258753570820e-05, 3.0094e+02, 5.6453e+00, + 1DIAGNOSTIC, 46, -9.401961258203e-01, 1.127734800621e-05, 3.0657e+02, 5.6245e+00, + 1DIAGNOSTIC, 47, -9.402442709030e-01, 1.011478574689e-05, 3.1215e+02, 5.5864e+00, + 1DIAGNOSTIC, 48, -9.402895613361e-01, 9.085677977402e-06, 3.1771e+02, 5.5528e+00, + 1DIAGNOSTIC, 49, -9.403305226193e-01, 8.170345100346e-06, 3.2337e+02, 5.6679e+00, + 1DIAGNOSTIC, 50, -9.403671478063e-01, 7.352353044953e-06, 3.2895e+02, 5.5725e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.960627051044e-01, 1.797693134862e+308, 3.7665e+02, 4.7701e+01, + 1DIAGNOSTIC, 2, -8.982334629168e-01, 1.797693134862e+308, 4.2420e+02, 4.7554e+01, + 1DIAGNOSTIC, 3, -9.004460239520e-01, 1.797693134862e+308, 4.6914e+02, 4.4936e+01, + 1DIAGNOSTIC, 4, -9.025359008185e-01, 1.797693134862e+308, 5.1330e+02, 4.4160e+01, + 1DIAGNOSTIC, 5, -9.041208361182e-01, 1.797693134862e+308, 5.5745e+02, 4.4155e+01, + 1DIAGNOSTIC, 6, -9.052738651609e-01, 1.797693134862e+308, 6.0189e+02, 4.4434e+01, + 1DIAGNOSTIC, 7, -9.061489999060e-01, 1.797693134862e+308, 6.4644e+02, 4.4549e+01, + 1DIAGNOSTIC, 8, -9.068715770978e-01, 1.797693134862e+308, 6.9049e+02, 4.4059e+01, + 1DIAGNOSTIC, 9, -9.075237877086e-01, 1.797693134862e+308, 7.3471e+02, 4.4220e+01, + 1DIAGNOSTIC, 10, -9.081696418338e-01, 8.402607315189e-04, 7.7960e+02, 4.4885e+01, + 1DIAGNOSTIC, 11, -9.087654186243e-01, 6.376749493855e-04, 8.2438e+02, 4.4783e+01, + 1DIAGNOSTIC, 12, -9.095823488094e-01, 4.894669432936e-04, 8.6898e+02, 4.4600e+01, + 1DIAGNOSTIC, 13, -9.103903261242e-01, 3.920926323150e-04, 9.1416e+02, 4.5175e+01, + 1DIAGNOSTIC, 14, -9.113572929829e-01, 3.410219594470e-04, 9.5844e+02, 4.4285e+01, + 1DIAGNOSTIC, 15, -9.121490494434e-01, 3.149412228396e-04, 1.0027e+03, 4.4244e+01, + 1DIAGNOSTIC, 16, -9.131105442993e-01, 3.045201532680e-04, 1.0475e+03, 4.4781e+01, + 1DIAGNOSTIC, 17, -9.140270594295e-01, 3.000778582984e-04, 1.0920e+03, 4.4578e+01, + 1DIAGNOSTIC, 18, -9.148181598468e-01, 2.945241734309e-04, 1.1366e+03, 4.4532e+01, + 1DIAGNOSTIC, 19, -9.154849116471e-01, 2.839028578561e-04, 1.1810e+03, 4.4384e+01, + 1DIAGNOSTIC, 20, -9.160912984771e-01, 2.675819864734e-04, 1.2253e+03, 4.4295e+01, + Elapsed time (stage 2): 1226 + + +Total elapsed time: 1278 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:22:50 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-T1map_to-fsnative_InverseWarped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:22:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:22:53 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:22:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:00 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 16962 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:05 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:05 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17067 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:05 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:08 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17123 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:08 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17131 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:08 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:12 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:15 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:15 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:16 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:17 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:19 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:19 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:21 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:23 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:24 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:24 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + +[38;5;75m +[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:24 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:24 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:34 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:45 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC005 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:45 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC005 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:46 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC005 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:46 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17752 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:48 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:48 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17784 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:50 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:50 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC005_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 72.950 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/logs/proc_func_18-03-2024-17507.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:56 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC005 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/QC/sub-PNC005_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC005* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 73.000 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC005_ses-01 +========================reprocessing without filter=================== +sub-PNC005_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC005 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC005 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC005 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC005 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:24:01 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:24:01 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:26:08 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:28:16 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:28:30 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.54 (mm) at sub-brick 209 +++ Max delta displ in automask = 0.38 (mm) at sub-brick 170 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:41:24 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:41:43 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:43:52 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:46:03 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:48:20 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.617 -1.596 2.543 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.6 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -1.021 -2.822 3.201 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.7 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:53:08 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:53:36 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55e840d016f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.036, 53.0104, -131.35] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e840b78730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e840d18010 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55e840d02b00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.2223, 111.209, -146.311] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e840d0ae10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e841514bb0 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55e841513ad0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.036, 53.0104, -131.35] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e840d073f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e84203ee20 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55e841513620) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.2223, 111.209, -146.311] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e840d0e110) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55e842838e70 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.584050778582e-01, 1.797693134862e+308, 4.1344e-02, 4.1343e-02, + 2DIAGNOSTIC, 2, -5.596635931967e-01, 1.797693134862e+308, 4.2745e-02, 1.4009e-03, + 2DIAGNOSTIC, 3, -5.641112457155e-01, 1.797693134862e+308, 4.4105e-02, 1.3599e-03, + 2DIAGNOSTIC, 4, -5.836329559707e-01, 1.797693134862e+308, 4.5337e-02, 1.2319e-03, + 2DIAGNOSTIC, 5, -5.961757385976e-01, 1.797693134862e+308, 4.6592e-02, 1.2548e-03, + 2DIAGNOSTIC, 6, -6.065823448767e-01, 1.797693134862e+308, 4.7899e-02, 1.3070e-03, + 2DIAGNOSTIC, 7, -6.189311080459e-01, 1.797693134862e+308, 5.0138e-02, 2.2392e-03, + 2DIAGNOSTIC, 8, -6.267549588936e-01, 1.797693134862e+308, 5.1692e-02, 1.5540e-03, + 2DIAGNOSTIC, 9, -6.270867576655e-01, 1.797693134862e+308, 5.2993e-02, 1.3008e-03, + 2DIAGNOSTIC, 10, -6.285811555676e-01, 9.108528659756e-03, 5.4510e-02, 1.5171e-03, + 2DIAGNOSTIC, 11, -6.316453688967e-01, 7.542514359447e-03, 5.6265e-02, 1.7550e-03, + 2DIAGNOSTIC, 12, -6.550428567697e-01, 6.523457240622e-03, 5.7731e-02, 1.4660e-03, + 2DIAGNOSTIC, 13, -7.319183004258e-01, 7.895794363965e-03, 5.9193e-02, 1.4620e-03, + 2DIAGNOSTIC, 14, -7.446134724600e-01, 9.303699871226e-03, 6.1171e-02, 1.9779e-03, + 2DIAGNOSTIC, 15, -7.523304223520e-01, 1.027773683957e-02, 6.3632e-02, 2.4612e-03, + 2DIAGNOSTIC, 16, -7.577410934035e-01, 1.063267488527e-02, 6.5362e-02, 1.7300e-03, + 2DIAGNOSTIC, 17, -7.623070391318e-01, 1.038391553822e-02, 6.7068e-02, 1.7061e-03, + 2DIAGNOSTIC, 18, -7.706567495123e-01, 9.569772548008e-03, 6.8827e-02, 1.7591e-03, + 2DIAGNOSTIC, 19, -7.721372973135e-01, 8.011652868113e-03, 7.0578e-02, 1.7512e-03, + 2DIAGNOSTIC, 20, -7.735213729055e-01, 5.986404831371e-03, 7.2320e-02, 1.7419e-03, + 2DIAGNOSTIC, 21, -7.744687217717e-01, 3.719686951810e-03, 7.3800e-02, 1.4799e-03, + 2DIAGNOSTIC, 22, -7.843836538629e-01, 1.940696684349e-03, 7.5277e-02, 1.4770e-03, + 2DIAGNOSTIC, 23, -7.898109012623e-01, 1.641520284882e-03, 7.7039e-02, 1.7619e-03, + 2DIAGNOSTIC, 24, -7.931648138743e-01, 1.492320991650e-03, 7.9456e-02, 2.4168e-03, + 2DIAGNOSTIC, 25, -7.948390112060e-01, 1.374466367962e-03, 8.1156e-02, 1.6999e-03, + 2DIAGNOSTIC, 26, -7.974292273704e-01, 1.264631300217e-03, 8.2655e-02, 1.4999e-03, + 2DIAGNOSTIC, 27, -7.990585244077e-01, 1.133171787515e-03, 8.4167e-02, 1.5111e-03, + 2DIAGNOSTIC, 28, -8.004174984770e-01, 1.044490776130e-03, 8.5722e-02, 1.5559e-03, + 2DIAGNOSTIC, 29, -8.019363376396e-01, 9.073229657576e-04, 8.7960e-02, 2.2380e-03, + 2DIAGNOSTIC, 30, -8.032659494840e-01, 7.331856872286e-04, 8.9698e-02, 1.7371e-03, + 2DIAGNOSTIC, 31, -8.027580632913e-01, 5.056008479681e-04, 9.1882e-02, 2.1839e-03, + 2DIAGNOSTIC, 32, -8.027718100649e-01, 3.688604541881e-04, 9.3365e-02, 1.4839e-03, + 2DIAGNOSTIC, 33, -8.028614064488e-01, 2.722477666415e-04, 9.4867e-02, 1.5011e-03, + 2DIAGNOSTIC, 34, -8.029208400439e-01, 1.955361254865e-04, 9.6393e-02, 1.5261e-03, + 2DIAGNOSTIC, 35, -8.029750436298e-01, 1.240491361088e-04, 9.7849e-02, 1.4560e-03, + 2DIAGNOSTIC, 36, -8.031552936479e-01, 7.547786530138e-05, 9.9780e-02, 1.9310e-03, + 2DIAGNOSTIC, 37, -8.027252367761e-01, 3.540745525211e-05, 1.0127e-01, 1.4892e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.203155074302e-01, 1.797693134862e+308, 1.4832e-01, 4.7049e-02, + 2DIAGNOSTIC, 2, -4.199871888765e-01, 1.797693134862e+308, 1.5086e-01, 2.5411e-03, + 2DIAGNOSTIC, 3, -4.217864688580e-01, 1.797693134862e+308, 1.5349e-01, 2.6300e-03, + 2DIAGNOSTIC, 4, -4.240532594574e-01, 1.797693134862e+308, 1.5605e-01, 2.5592e-03, + 2DIAGNOSTIC, 5, -4.262511738700e-01, 1.797693134862e+308, 1.5824e-01, 2.1889e-03, + 2DIAGNOSTIC, 6, -4.327311243759e-01, 1.797693134862e+308, 1.6075e-01, 2.5089e-03, + 2DIAGNOSTIC, 7, -4.327586622637e-01, 1.797693134862e+308, 1.6293e-01, 2.1861e-03, + 2DIAGNOSTIC, 8, -4.416578568901e-01, 1.797693134862e+308, 1.6547e-01, 2.5411e-03, + 2DIAGNOSTIC, 9, -4.721544229491e-01, 1.797693134862e+308, 1.6767e-01, 2.1961e-03, + 2DIAGNOSTIC, 10, -5.089513725208e-01, 9.903349145293e-03, 1.7008e-01, 2.4159e-03, + 2DIAGNOSTIC, 11, -5.845563746910e-01, 1.606175532946e-02, 1.7296e-01, 2.8720e-03, + 2DIAGNOSTIC, 12, -6.071179612283e-01, 2.050823651602e-02, 1.7582e-01, 2.8620e-03, + 2DIAGNOSTIC, 13, -6.201681327791e-01, 2.293757950423e-02, 1.7837e-01, 2.5499e-03, + 2DIAGNOSTIC, 14, -6.293265538589e-01, 2.334925262033e-02, 1.8087e-01, 2.4970e-03, + 2DIAGNOSTIC, 15, -6.365686351120e-01, 2.190782081232e-02, 1.8340e-01, 2.5361e-03, + 2DIAGNOSTIC, 16, -6.365895915933e-01, 1.891831884894e-02, 1.8561e-01, 2.2070e-03, + 2DIAGNOSTIC, 17, -6.375988652291e-01, 1.468765527182e-02, 1.8899e-01, 3.3841e-03, + 2DIAGNOSTIC, 18, -6.386091529249e-01, 1.000817139127e-02, 1.9121e-01, 2.2128e-03, + 2DIAGNOSTIC, 19, -6.393581249784e-01, 5.892465228586e-03, 1.9432e-01, 3.1140e-03, + 2DIAGNOSTIC, 20, -6.395287444521e-01, 2.664176403180e-03, 1.9652e-01, 2.1999e-03, + 2DIAGNOSTIC, 21, -6.396952035163e-01, 1.450599241271e-03, 1.9871e-01, 2.1882e-03, + 2DIAGNOSTIC, 22, -6.400668626005e-01, 7.745189731224e-04, 2.0150e-01, 2.7959e-03, + 2DIAGNOSTIC, 23, -6.399650039233e-01, 3.831204524901e-04, 2.0445e-01, 2.9440e-03, + 2DIAGNOSTIC, 24, -6.400789422385e-01, 1.890170203841e-04, 2.0670e-01, 2.2550e-03, + 2DIAGNOSTIC, 25, -6.401254785961e-01, 1.451654916460e-04, 2.0926e-01, 2.5589e-03, + 2DIAGNOSTIC, 26, -6.405076295114e-01, 9.942429926814e-05, 2.1154e-01, 2.2810e-03, + 2DIAGNOSTIC, 27, -6.405997362523e-01, 6.842401038981e-05, 2.1440e-01, 2.8560e-03, + 2DIAGNOSTIC, 28, -6.407458503274e-01, 5.420165761894e-05, 2.1667e-01, 2.2690e-03, + 2DIAGNOSTIC, 29, -6.409316025123e-01, 5.236045854335e-05, 2.1926e-01, 2.5971e-03, + 2DIAGNOSTIC, 30, -6.410787660861e-01, 5.102333857564e-05, 2.2184e-01, 2.5761e-03, + 2DIAGNOSTIC, 31, -6.411149781239e-01, 4.807066807578e-05, 2.2447e-01, 2.6319e-03, + 2DIAGNOSTIC, 32, -6.411620275741e-01, 4.745958678638e-05, 2.2675e-01, 2.2759e-03, + 2DIAGNOSTIC, 33, -6.411475696139e-01, 4.079156207865e-05, 2.2952e-01, 2.7680e-03, + 2DIAGNOSTIC, 34, -6.411566603685e-01, 3.261174037334e-05, 2.3239e-01, 2.8710e-03, + 2DIAGNOSTIC, 35, -6.411597581788e-01, 2.250758052820e-05, 2.3562e-01, 3.2320e-03, + 2DIAGNOSTIC, 36, -6.411636873104e-01, 1.623698661845e-05, 2.3853e-01, 2.9061e-03, + 2DIAGNOSTIC, 37, -6.411800382952e-01, 1.031577399011e-05, 2.4148e-01, 2.9571e-03, + 2DIAGNOSTIC, 38, -6.411816893469e-01, 5.695724497483e-06, 2.4409e-01, 2.6021e-03, + 2DIAGNOSTIC, 39, -6.411860114597e-01, 3.209361165993e-06, 2.4669e-01, 2.6090e-03, + 2DIAGNOSTIC, 40, -6.411993402108e-01, 2.572736076040e-06, 2.5196e-01, 5.2669e-03, + 2DIAGNOSTIC, 41, -6.411995062890e-01, 2.214799914323e-06, 2.5578e-01, 3.8199e-03, + 2DIAGNOSTIC, 42, -6.411995152150e-01, 2.290693651080e-06, 2.5916e-01, 3.3751e-03, + 2DIAGNOSTIC, 43, -6.411995167758e-01, 2.060651018741e-06, 2.6232e-01, 3.1669e-03, + 2DIAGNOSTIC, 44, -6.411995170601e-01, 1.822177367244e-06, 2.7083e-01, 8.5120e-03, + 2DIAGNOSTIC, 45, -6.411995170601e-01, 1.527552625700e-06, 2.7579e-01, 4.9560e-03, + 2DIAGNOSTIC, 46, -6.411995170601e-01, 1.210200333560e-06, 2.7874e-01, 2.9500e-03, + 2DIAGNOSTIC, 47, -6.411995170601e-01, 1.031425991949e-06, 2.8199e-01, 3.2480e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.931557405432e-01, 1.797693134862e+308, 3.5407e-01, 7.2084e-02, + 2DIAGNOSTIC, 2, -4.937909739836e-01, 1.797693134862e+308, 3.6519e-01, 1.1121e-02, + 2DIAGNOSTIC, 3, -4.948079866554e-01, 1.797693134862e+308, 3.7609e-01, 1.0899e-02, + 2DIAGNOSTIC, 4, -4.964288624980e-01, 1.797693134862e+308, 3.8671e-01, 1.0617e-02, + 2DIAGNOSTIC, 5, -4.981935780601e-01, 1.797693134862e+308, 3.9733e-01, 1.0624e-02, + 2DIAGNOSTIC, 6, -4.983626007519e-01, 1.797693134862e+308, 4.0789e-01, 1.0554e-02, + 2DIAGNOSTIC, 7, -4.986080397212e-01, 1.797693134862e+308, 4.1861e-01, 1.0718e-02, + 2DIAGNOSTIC, 8, -4.993420852762e-01, 1.797693134862e+308, 4.3499e-01, 1.6380e-02, + 2DIAGNOSTIC, 9, -4.997678481649e-01, 1.797693134862e+308, 4.4816e-01, 1.3175e-02, + 2DIAGNOSTIC, 10, -4.998641972237e-01, 9.267862233754e-04, 4.6201e-01, 1.3845e-02, + 2DIAGNOSTIC, 11, -4.999175066782e-01, 7.022146373147e-04, 4.7602e-01, 1.4018e-02, + 2DIAGNOSTIC, 12, -4.999726956061e-01, 4.862806867479e-04, 4.9008e-01, 1.4051e-02, + 2DIAGNOSTIC, 13, -5.000034500840e-01, 3.044534475551e-04, 5.0466e-01, 1.4584e-02, + 2DIAGNOSTIC, 14, -5.000192473003e-01, 1.857892713958e-04, 5.1697e-01, 1.2309e-02, + 2DIAGNOSTIC, 15, -5.000397775354e-01, 1.344441846168e-04, 5.3089e-01, 1.3925e-02, + 2DIAGNOSTIC, 16, -5.000761401367e-01, 8.499432323233e-05, 5.4800e-01, 1.7108e-02, + 2DIAGNOSTIC, 17, -5.000908317560e-01, 4.192753360919e-05, 5.6236e-01, 1.4362e-02, + 2DIAGNOSTIC, 18, -5.001067911898e-01, 2.338294009459e-05, 5.7631e-01, 1.3949e-02, + 2DIAGNOSTIC, 19, -5.001161571301e-01, 1.780852391761e-05, 5.9042e-01, 1.4105e-02, + 2DIAGNOSTIC, 20, -5.001206767744e-01, 1.414814203505e-05, 6.0364e-01, 1.3219e-02, + 2DIAGNOSTIC, 21, -5.001259666099e-01, 1.121883332320e-05, 6.1480e-01, 1.1160e-02, + 2DIAGNOSTIC, 22, -5.001317989739e-01, 9.212182409457e-06, 6.2609e-01, 1.1290e-02, + 2DIAGNOSTIC, 23, -5.001354825181e-01, 7.507344180063e-06, 6.3707e-01, 1.0987e-02, + 2DIAGNOSTIC, 24, -5.001667098788e-01, 6.485168793487e-06, 6.4938e-01, 1.2304e-02, + 2DIAGNOSTIC, 25, -5.001616738185e-01, 5.379902523028e-06, 6.6098e-01, 1.1600e-02, + 2DIAGNOSTIC, 26, -5.001743146001e-01, 5.055579686081e-06, 6.7615e-01, 1.5176e-02, + 2DIAGNOSTIC, 27, -5.001655032760e-01, 4.512055978699e-06, 6.9616e-01, 2.0009e-02, + 2DIAGNOSTIC, 28, -5.001593937114e-01, 3.893445498865e-06, 7.0957e-01, 1.3412e-02, + 2DIAGNOSTIC, 29, -5.001675593113e-01, 3.397392285845e-06, 7.2136e-01, 1.1788e-02, + 2DIAGNOSTIC, 30, -5.001691439851e-01, 2.822566459705e-06, 7.3363e-01, 1.2268e-02, + 2DIAGNOSTIC, 31, -5.001792836261e-01, 2.404963036072e-06, 7.7134e-01, 3.7713e-02, + 2DIAGNOSTIC, 32, -5.001792836220e-01, 1.989935399835e-06, 8.0730e-01, 3.5959e-02, + 2DIAGNOSTIC, 33, -5.001792836220e-01, 1.560811071499e-06, 8.2051e-01, 1.3212e-02, + 2DIAGNOSTIC, 34, -5.001792836220e-01, 1.626629113585e-06, 8.3363e-01, 1.3119e-02, + 2DIAGNOSTIC, 35, -5.001792836220e-01, 1.530477030141e-06, 8.4773e-01, 1.4102e-02, + 2DIAGNOSTIC, 36, -5.001792836220e-01, 1.582720417923e-06, 8.5924e-01, 1.1505e-02, + 2DIAGNOSTIC, 37, -5.001792836220e-01, 1.434224229952e-06, 8.7200e-01, 1.2761e-02, + 2DIAGNOSTIC, 38, -5.001792836220e-01, 1.146730025142e-06, 8.8525e-01, 1.3253e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.255750408165e-01, 1.797693134862e+308, 1.0600e+00, 1.7475e-01, + Elapsed time (stage 0): 1.0851e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.402696136656e-01, 1.797693134862e+308, 3.2787e-02, 3.2787e-02, + 2DIAGNOSTIC, 2, -9.427889079300e-01, 1.797693134862e+308, 3.4115e-02, 1.3280e-03, + 2DIAGNOSTIC, 3, -9.472719582843e-01, 1.797693134862e+308, 3.5250e-02, 1.1351e-03, + 2DIAGNOSTIC, 4, -9.526724699395e-01, 1.797693134862e+308, 3.6431e-02, 1.1811e-03, + 2DIAGNOSTIC, 5, -9.612167868444e-01, 1.797693134862e+308, 3.7578e-02, 1.1470e-03, + 2DIAGNOSTIC, 6, -9.738557586781e-01, 1.797693134862e+308, 3.8733e-02, 1.1549e-03, + 2DIAGNOSTIC, 7, -9.812066764142e-01, 1.797693134862e+308, 4.0522e-02, 1.7889e-03, + 2DIAGNOSTIC, 8, -9.878563283706e-01, 1.797693134862e+308, 4.1710e-02, 1.1880e-03, + 2DIAGNOSTIC, 9, -9.978247795975e-01, 1.797693134862e+308, 4.3318e-02, 1.6079e-03, + 2DIAGNOSTIC, 10, -1.011462937438e+00, 4.786008310013e-03, 4.4899e-02, 1.5810e-03, + 2DIAGNOSTIC, 11, -1.013191875122e+00, 4.562987179674e-03, 4.6622e-02, 1.7228e-03, + 2DIAGNOSTIC, 12, -1.015666416338e+00, 4.095032639537e-03, 4.7961e-02, 1.3390e-03, + 2DIAGNOSTIC, 13, -1.016167477639e+00, 3.447681108765e-03, 4.9288e-02, 1.3270e-03, + 2DIAGNOSTIC, 14, -1.018248223122e+00, 2.734410834430e-03, 5.0767e-02, 1.4791e-03, + 2DIAGNOSTIC, 15, -1.018402948161e+00, 2.029186411826e-03, 5.2331e-02, 1.5640e-03, + 2DIAGNOSTIC, 16, -1.019007163701e+00, 1.467097813719e-03, 5.4403e-02, 2.0721e-03, + 2DIAGNOSTIC, 17, -1.019284637022e+00, 9.694562052470e-04, 5.6170e-02, 1.7672e-03, + 2DIAGNOSTIC, 18, -1.020198750852e+00, 5.580979482625e-04, 5.8799e-02, 2.6290e-03, + 2DIAGNOSTIC, 19, -1.020982184047e+00, 2.960879087613e-04, 6.0837e-02, 2.0380e-03, + 2DIAGNOSTIC, 20, -1.020490610070e+00, 2.211988261684e-04, 6.2140e-02, 1.3030e-03, + 2DIAGNOSTIC, 21, -1.020515994296e+00, 1.569930411951e-04, 6.3471e-02, 1.3311e-03, + 2DIAGNOSTIC, 22, -1.021315313662e+00, 1.268306280695e-04, 6.4774e-02, 1.3030e-03, + 2DIAGNOSTIC, 23, -1.024566269188e+00, 1.328871968474e-04, 6.6349e-02, 1.5750e-03, + 2DIAGNOSTIC, 24, -1.027787493663e+00, 1.878853589679e-04, 6.7916e-02, 1.5669e-03, + 2DIAGNOSTIC, 25, -1.031206358083e+00, 2.610712801344e-04, 6.9607e-02, 1.6911e-03, + 2DIAGNOSTIC, 26, -1.033082223556e+00, 3.311967095987e-04, 7.0943e-02, 1.3361e-03, + 2DIAGNOSTIC, 27, -1.035995324009e+00, 3.982716690182e-04, 7.2974e-02, 2.0308e-03, + 2DIAGNOSTIC, 28, -1.037066086124e+00, 4.420067291133e-04, 7.4738e-02, 1.7638e-03, + 2DIAGNOSTIC, 29, -1.037275372951e+00, 4.505548201409e-04, 7.6091e-02, 1.3530e-03, + 2DIAGNOSTIC, 30, -1.035134520715e+00, 3.916794592628e-04, 7.7453e-02, 1.3621e-03, + 2DIAGNOSTIC, 31, -1.035450191606e+00, 3.037326712359e-04, 7.8997e-02, 1.5440e-03, + 2DIAGNOSTIC, 32, -1.035653880219e+00, 2.008186869019e-04, 8.0343e-02, 1.3461e-03, + 2DIAGNOSTIC, 33, -1.034779548647e+00, 1.049219326320e-04, 8.1952e-02, 1.6088e-03, + 2DIAGNOSTIC, 34, -1.035135477142e+00, 3.461107211399e-05, 8.3374e-02, 1.4222e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.114417686289e-01, 1.797693134862e+308, 1.2510e-01, 4.1729e-02, + 2DIAGNOSTIC, 2, -7.117134922877e-01, 1.797693134862e+308, 1.2772e-01, 2.6171e-03, + 2DIAGNOSTIC, 3, -7.137007763735e-01, 1.797693134862e+308, 1.3031e-01, 2.5909e-03, + 2DIAGNOSTIC, 4, -7.170572044913e-01, 1.797693134862e+308, 1.3287e-01, 2.5630e-03, + 2DIAGNOSTIC, 5, -7.227486461327e-01, 1.797693134862e+308, 1.3505e-01, 2.1791e-03, + 2DIAGNOSTIC, 6, -7.321906541314e-01, 1.797693134862e+308, 1.3732e-01, 2.2712e-03, + 2DIAGNOSTIC, 7, -7.389180544841e-01, 1.797693134862e+308, 1.3945e-01, 2.1241e-03, + 2DIAGNOSTIC, 8, -7.528586073308e-01, 1.797693134862e+308, 1.4258e-01, 3.1331e-03, + 2DIAGNOSTIC, 9, -7.595626137300e-01, 1.797693134862e+308, 1.4632e-01, 3.7410e-03, + 2DIAGNOSTIC, 10, -7.596366083235e-01, 5.021855608619e-03, 1.4905e-01, 2.7311e-03, + 2DIAGNOSTIC, 11, -7.595511928311e-01, 4.680759812511e-03, 1.5168e-01, 2.6221e-03, + 2DIAGNOSTIC, 12, -7.596576831424e-01, 3.991756288036e-03, 1.5399e-01, 2.3129e-03, + 2DIAGNOSTIC, 13, -7.597628494334e-01, 3.109624209292e-03, 1.5669e-01, 2.6989e-03, + 2DIAGNOSTIC, 14, -7.599933934486e-01, 2.170654121937e-03, 1.5919e-01, 2.4998e-03, + 2DIAGNOSTIC, 15, -7.603636080959e-01, 1.317550968386e-03, 1.6164e-01, 2.4509e-03, + 2DIAGNOSTIC, 16, -7.610006572458e-01, 6.962186338161e-04, 1.6411e-01, 2.4762e-03, + 2DIAGNOSTIC, 17, -7.616444909567e-01, 2.441836095354e-04, 1.6657e-01, 2.4559e-03, + 2DIAGNOSTIC, 18, -7.622541008059e-01, 1.254385705526e-04, 1.6896e-01, 2.3940e-03, + 2DIAGNOSTIC, 19, -7.635104890062e-01, 1.675906453488e-04, 1.7164e-01, 2.6739e-03, + 2DIAGNOSTIC, 20, -7.641271582012e-01, 2.027520930102e-04, 1.7493e-01, 3.2909e-03, + 2DIAGNOSTIC, 21, -7.644567125333e-01, 2.200970483439e-04, 1.7736e-01, 2.4319e-03, + 2DIAGNOSTIC, 22, -7.655737591117e-01, 2.367059176639e-04, 1.8051e-01, 3.1512e-03, + 2DIAGNOSTIC, 23, -7.671671013852e-01, 2.574013549814e-04, 1.8613e-01, 5.6219e-03, + 2DIAGNOSTIC, 24, -7.673478336999e-01, 2.581424778647e-04, 1.8923e-01, 3.0940e-03, + 2DIAGNOSTIC, 25, -7.678687145722e-01, 2.484542768345e-04, 1.9193e-01, 2.7061e-03, + 2DIAGNOSTIC, 26, -7.683030964602e-01, 2.320412678910e-04, 1.9468e-01, 2.7468e-03, + 2DIAGNOSTIC, 27, -7.686893365209e-01, 2.092651147119e-04, 1.9735e-01, 2.6710e-03, + 2DIAGNOSTIC, 28, -7.690027199138e-01, 1.802837114350e-04, 2.0023e-01, 2.8739e-03, + 2DIAGNOSTIC, 29, -7.689617496370e-01, 1.522083436819e-04, 2.0275e-01, 2.5280e-03, + 2DIAGNOSTIC, 30, -7.692011038993e-01, 1.229055439300e-04, 2.0557e-01, 2.8148e-03, + 2DIAGNOSTIC, 31, -7.694850077812e-01, 9.118603967680e-05, 2.0839e-01, 2.8191e-03, + 2DIAGNOSTIC, 32, -7.696419715096e-01, 6.735503874862e-05, 2.1123e-01, 2.8410e-03, + 2DIAGNOSTIC, 33, -7.696141935214e-01, 5.661534328186e-05, 2.1413e-01, 2.8992e-03, + 2DIAGNOSTIC, 34, -7.696789799843e-01, 4.398480546988e-05, 2.1701e-01, 2.8801e-03, + 2DIAGNOSTIC, 35, -7.696988815723e-01, 3.373374861285e-05, 2.1960e-01, 2.5921e-03, + 2DIAGNOSTIC, 36, -7.697241307919e-01, 2.559064195567e-05, 2.2224e-01, 2.6410e-03, + 2DIAGNOSTIC, 37, -7.696784764609e-01, 1.891671146260e-05, 2.2455e-01, 2.3110e-03, + 2DIAGNOSTIC, 38, -7.695803916107e-01, 1.311101847893e-05, 2.2682e-01, 2.2659e-03, + 2DIAGNOSTIC, 39, -7.695959681401e-01, 6.202500416393e-06, 2.2912e-01, 2.2988e-03, + 2DIAGNOSTIC, 40, -7.696225363935e-01, 1.535112810438e-06, 2.3144e-01, 2.3198e-03, + 2DIAGNOSTIC, 41, -7.698384508524e-01, 1.543449134986e-06, 2.3477e-01, 3.3360e-03, + 2DIAGNOSTIC, 42, -7.698450315923e-01, 2.915218842683e-06, 2.3743e-01, 2.6622e-03, + 2DIAGNOSTIC, 43, -7.697939408167e-01, 3.359660747687e-06, 2.3980e-01, 2.3661e-03, + 2DIAGNOSTIC, 44, -7.697455638589e-01, 3.708546442549e-06, 2.4231e-01, 2.5082e-03, + 2DIAGNOSTIC, 45, -7.696447621558e-01, 3.056466597449e-06, 2.4479e-01, 2.4791e-03, + 2DIAGNOSTIC, 46, -7.696645280948e-01, 2.560052232346e-06, 2.4750e-01, 2.7130e-03, + 2DIAGNOSTIC, 47, -7.697209190078e-01, 1.993685636935e-06, 2.4994e-01, 2.4350e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.790143415655e-01, 1.797693134862e+308, 3.1168e-01, 6.1742e-02, + 2DIAGNOSTIC, 2, -5.792958082869e-01, 1.797693134862e+308, 3.2318e-01, 1.1506e-02, + 2DIAGNOSTIC, 3, -5.797455208542e-01, 1.797693134862e+308, 3.3500e-01, 1.1817e-02, + 2DIAGNOSTIC, 4, -5.804346902026e-01, 1.797693134862e+308, 3.4660e-01, 1.1595e-02, + 2DIAGNOSTIC, 5, -5.813186803536e-01, 1.797693134862e+308, 3.5799e-01, 1.1398e-02, + 2DIAGNOSTIC, 6, -5.823770647071e-01, 1.797693134862e+308, 3.6958e-01, 1.1581e-02, + 2DIAGNOSTIC, 7, -5.828525999901e-01, 1.797693134862e+308, 3.8673e-01, 1.7160e-02, + 2DIAGNOSTIC, 8, -5.831093610795e-01, 1.797693134862e+308, 3.9798e-01, 1.1245e-02, + 2DIAGNOSTIC, 9, -5.831753496705e-01, 1.797693134862e+308, 4.0946e-01, 1.1479e-02, + 2DIAGNOSTIC, 10, -5.832277210692e-01, 5.539551999519e-04, 4.2149e-01, 1.2031e-02, + 2DIAGNOSTIC, 11, -5.833431064946e-01, 4.439274804513e-04, 4.3843e-01, 1.6944e-02, + 2DIAGNOSTIC, 12, -5.834707094166e-01, 3.292074346931e-04, 4.5468e-01, 1.6247e-02, + 2DIAGNOSTIC, 13, -5.834735950850e-01, 2.197245039360e-04, 4.6682e-01, 1.2140e-02, + 2DIAGNOSTIC, 14, -5.835476512968e-01, 1.326784267104e-04, 4.7844e-01, 1.1622e-02, + 2DIAGNOSTIC, 15, -5.836368709287e-01, 7.632341160096e-05, 4.9016e-01, 1.1713e-02, + 2DIAGNOSTIC, 16, -5.837404289237e-01, 5.525764831314e-05, 5.0191e-01, 1.1755e-02, + 2DIAGNOSTIC, 17, -5.838726618053e-01, 4.896318909457e-05, 5.1361e-01, 1.1700e-02, + 2DIAGNOSTIC, 18, -5.841414674248e-01, 5.323273650380e-05, 5.3131e-01, 1.7701e-02, + 2DIAGNOSTIC, 19, -5.842026854865e-01, 5.544621148681e-05, 5.4809e-01, 1.6777e-02, + 2DIAGNOSTIC, 20, -5.842341551472e-01, 5.448071115499e-05, 5.6012e-01, 1.2030e-02, + 2DIAGNOSTIC, 21, -5.844289358979e-01, 5.586626135058e-05, 5.7360e-01, 1.3480e-02, + 2DIAGNOSTIC, 22, -5.844862013560e-01, 5.602631904959e-05, 5.8567e-01, 1.2075e-02, + 2DIAGNOSTIC, 23, -5.845493224013e-01, 5.239380346062e-05, 5.9909e-01, 1.3420e-02, + 2DIAGNOSTIC, 24, -5.845928967822e-01, 4.668864020424e-05, 6.1593e-01, 1.6841e-02, + 2DIAGNOSTIC, 25, -5.846146470059e-01, 3.938433237296e-05, 6.2826e-01, 1.2325e-02, + 2DIAGNOSTIC, 26, -5.848807428831e-01, 3.594699145995e-05, 6.4077e-01, 1.2512e-02, + 2DIAGNOSTIC, 27, -5.858679986624e-01, 4.942800084255e-05, 6.5593e-01, 1.5160e-02, + 2DIAGNOSTIC, 28, -5.870123605787e-01, 8.155495904658e-05, 6.6805e-01, 1.2116e-02, + 2DIAGNOSTIC, 29, -5.884895068723e-01, 1.294335860352e-04, 6.8009e-01, 1.2041e-02, + 2DIAGNOSTIC, 30, -5.895362198421e-01, 1.791639969253e-04, 6.9416e-01, 1.4069e-02, + 2DIAGNOSTIC, 31, -5.899304198785e-01, 2.180144226125e-04, 7.0904e-01, 1.4882e-02, + 2DIAGNOSTIC, 32, -5.901769399599e-01, 2.385127642718e-04, 7.2107e-01, 1.2030e-02, + 2DIAGNOSTIC, 33, -5.907898505553e-01, 2.450378970709e-04, 7.3487e-01, 1.3798e-02, + 2DIAGNOSTIC, 34, -5.913562566269e-01, 2.364050608259e-04, 7.4953e-01, 1.4663e-02, + 2DIAGNOSTIC, 35, -5.915124219244e-01, 2.082834188892e-04, 7.6342e-01, 1.3887e-02, + 2DIAGNOSTIC, 36, -5.919291508946e-01, 1.713817441517e-04, 7.7698e-01, 1.3558e-02, + 2DIAGNOSTIC, 37, -5.930013520181e-01, 1.472196508724e-04, 7.9259e-01, 1.5619e-02, + 2DIAGNOSTIC, 38, -5.937245041476e-01, 1.335062881786e-04, 8.0648e-01, 1.3888e-02, + 2DIAGNOSTIC, 39, -5.941971402579e-01, 1.316985077630e-04, 8.2049e-01, 1.4008e-02, + 2DIAGNOSTIC, 40, -5.961803757565e-01, 1.543402450939e-04, 8.3644e-01, 1.5945e-02, + 2DIAGNOSTIC, 41, -5.967542509866e-01, 1.721698832506e-04, 8.4902e-01, 1.2583e-02, + 2DIAGNOSTIC, 42, -5.970513194431e-01, 1.788712881352e-04, 8.6113e-01, 1.2116e-02, + 2DIAGNOSTIC, 43, -5.980560372649e-01, 1.865234575980e-04, 8.7773e-01, 1.6596e-02, + 2DIAGNOSTIC, 44, -5.984596968446e-01, 1.865689101079e-04, 8.9091e-01, 1.3180e-02, + 2DIAGNOSTIC, 45, -5.986032314139e-01, 1.718628127658e-04, 9.0247e-01, 1.1564e-02, + 2DIAGNOSTIC, 46, -5.986873703897e-01, 1.465440382376e-04, 9.1594e-01, 1.3467e-02, + 2DIAGNOSTIC, 47, -5.988327559498e-01, 1.210212851022e-04, 9.2747e-01, 1.1532e-02, + 2DIAGNOSTIC, 48, -5.990597739275e-01, 9.462351354530e-05, 9.4184e-01, 1.4364e-02, + 2DIAGNOSTIC, 49, -5.992635939979e-01, 6.640760028083e-05, 9.5348e-01, 1.1643e-02, + 2DIAGNOSTIC, 50, -5.994637910160e-01, 5.412135729934e-05, 9.7088e-01, 1.7404e-02, + 2DIAGNOSTIC, 51, -5.995025586827e-01, 4.307710053472e-05, 9.8247e-01, 1.1585e-02, + 2DIAGNOSTIC, 52, -5.996900155883e-01, 3.270139678956e-05, 9.9401e-01, 1.1541e-02, + 2DIAGNOSTIC, 53, -5.997798613055e-01, 2.947333106878e-05, 1.0085e+00, 1.4490e-02, + 2DIAGNOSTIC, 54, -5.998099836604e-01, 2.742314175214e-05, 1.0234e+00, 1.4850e-02, + 2DIAGNOSTIC, 55, -5.998172260134e-01, 2.421335224373e-05, 1.0352e+00, 1.1836e-02, + 2DIAGNOSTIC, 56, -5.998229638340e-01, 1.963702757416e-05, 1.0474e+00, 1.2223e-02, + 2DIAGNOSTIC, 57, -5.998337244220e-01, 1.467917648151e-05, 1.0595e+00, 1.2085e-02, + 2DIAGNOSTIC, 58, -5.998432015381e-01, 1.045980957379e-05, 1.0761e+00, 1.6570e-02, + 2DIAGNOSTIC, 59, -5.998511664296e-01, 7.137186193815e-06, 1.0987e+00, 2.2651e-02, + 2DIAGNOSTIC, 60, -5.998511663134e-01, 4.919512679977e-06, 1.1108e+00, 1.2099e-02, + 2DIAGNOSTIC, 61, -5.998522126945e-01, 2.639210115351e-06, 1.1232e+00, 1.2344e-02, + 2DIAGNOSTIC, 62, -5.998530167787e-01, 1.674625803496e-06, 1.1360e+00, 1.2812e-02, + 2DIAGNOSTIC, 63, -5.998539205263e-01, 1.316122799178e-06, 1.1472e+00, 1.1246e-02, + 2DIAGNOSTIC, 64, -5.998541122684e-01, 1.118498998445e-06, 1.1601e+00, 1.2877e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.045756680934e-01, 1.797693134862e+308, 1.3406e+00, 1.8050e-01, + Elapsed time (stage 1): 1.3639e+00 + + +Total elapsed time: 2.4495e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:53:40 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 42 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 96 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 83.17% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 83.17% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[1228 779 200 243 196 2559 0 0 795 3968 210 8574 0 0 + 0 1030 0 1912 1081 1311 0 0 0 446 0 0 949 0 + 0 505 0 0 0 271 0 0 0 0 0 0 0 0] +[115625 85181 36073 33989 23625 23616 34492 30696 22535 21148 + 21318 15909 16148 13494 14268 13995 12839 8570 10160 7353 + 4034 10630 4311 2932 2367 3676 5166 3088 1946 2746 + 8305 1252 1611 2307 2198 1955 1355 1190 2124 2003 + 1534 1888] +[ 0 0 437 8466 0 255 1027 13733 0 0 1653 272 + 0 0 0 0 0 0 16445 0 0 802 14207 0 + 0 0 0 0 0 0 0 0 0 0 0 0 + 0 0 2596 0 9444 0] +[ 10895 12354 1345 2744 8040 2614 107191 5111 1112 15713 + 5683 13898 3128 1549 15223 1787 9763 3137 1383 4886 + 3253 102499 4122 11269 9052 22533 9411 12713 8467 6364 + 7314 9505 6451 9670 2143 4332 6521 6244 4397 11064 + 1519 2154] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:03:17 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:03:23 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:20 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:20 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:31 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:34 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC005 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:48 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:08:15 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:10:09 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:10:10 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:11:31 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:11:32 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5647c7423d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [75.6715, 111.658, -146.76] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5647c729a730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f1ac5d6b010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5647c7427020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.485, 53.4596, -131.8] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5647c742d0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f1ac26ac010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5647c743d840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [75.6715, 111.658, -146.76] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5647c7429890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f1abd9d8010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5647c74413e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.485, 53.4596, -131.8] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5647c7430130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f1aba319010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.069008817419e-01, 1.797693134862e+308, 2.6232e-01, 2.6232e-01, + 2DIAGNOSTIC, 2, -4.097149279906e-01, 1.797693134862e+308, 2.6397e-01, 1.6439e-03, + 2DIAGNOSTIC, 3, -4.136967358247e-01, 1.797693134862e+308, 2.6559e-01, 1.6220e-03, + 2DIAGNOSTIC, 4, -4.166168035617e-01, 1.797693134862e+308, 2.6720e-01, 1.6141e-03, + 2DIAGNOSTIC, 5, -4.208371556802e-01, 1.797693134862e+308, 2.6881e-01, 1.6079e-03, + 2DIAGNOSTIC, 6, -4.300088058592e-01, 1.797693134862e+308, 2.7039e-01, 1.5788e-03, + 2DIAGNOSTIC, 7, -4.415678180634e-01, 1.797693134862e+308, 2.7231e-01, 1.9219e-03, + 2DIAGNOSTIC, 8, -4.451667274411e-01, 1.797693134862e+308, 2.7420e-01, 1.8849e-03, + 2DIAGNOSTIC, 9, -4.475152531006e-01, 1.797693134862e+308, 2.7588e-01, 1.6890e-03, + 2DIAGNOSTIC, 10, -4.511295266961e-01, 7.468823327982e-03, 2.7790e-01, 2.0120e-03, + 2DIAGNOSTIC, 11, -4.631941864368e-01, 7.256887875179e-03, 2.7991e-01, 2.0120e-03, + 2DIAGNOSTIC, 12, -4.949774623093e-01, 8.245126280923e-03, 2.8249e-01, 2.5811e-03, + 2DIAGNOSTIC, 13, -5.058088776049e-01, 9.008338900206e-03, 2.8537e-01, 2.8820e-03, + 2DIAGNOSTIC, 14, -5.064433477070e-01, 9.016407941505e-03, 2.8759e-01, 2.2178e-03, + 2DIAGNOSTIC, 15, -5.069572570301e-01, 8.424952517096e-03, 2.9043e-01, 2.8419e-03, + 2DIAGNOSTIC, 16, -5.072264192534e-01, 7.502236873199e-03, 2.9239e-01, 1.9610e-03, + 2DIAGNOSTIC, 17, -5.077269659031e-01, 6.431570074510e-03, 2.9462e-01, 2.2302e-03, + 2DIAGNOSTIC, 18, -5.084055479047e-01, 5.043551440566e-03, 2.9719e-01, 2.5690e-03, + 2DIAGNOSTIC, 19, -5.084779956913e-01, 3.445747519348e-03, 2.9945e-01, 2.2631e-03, + 2DIAGNOSTIC, 20, -5.082392276026e-01, 1.813994461627e-03, 3.0141e-01, 1.9541e-03, + 2DIAGNOSTIC, 21, -5.080176512346e-01, 5.043935858712e-04, 3.0333e-01, 1.9231e-03, + 2DIAGNOSTIC, 22, -5.080965856514e-01, 1.464570362143e-04, 3.0530e-01, 1.9650e-03, + 2DIAGNOSTIC, 23, -5.082066694183e-01, 9.509944589563e-05, 3.0728e-01, 1.9791e-03, + 2DIAGNOSTIC, 24, -5.083612823735e-01, 5.908862004768e-05, 3.0924e-01, 1.9670e-03, + 2DIAGNOSTIC, 25, -5.088372349053e-01, 4.481882532965e-05, 3.1155e-01, 2.3060e-03, + 2DIAGNOSTIC, 26, -5.096941065984e-01, 5.331226993187e-05, 3.1338e-01, 1.8330e-03, + 2DIAGNOSTIC, 27, -5.094871934839e-01, 6.186130348517e-05, 3.1988e-01, 6.5010e-03, + 2DIAGNOSTIC, 28, -5.094871422616e-01, 7.874949389541e-05, 3.2180e-01, 1.9140e-03, + 2DIAGNOSTIC, 29, -5.094871831288e-01, 8.882444873760e-05, 3.2367e-01, 1.8778e-03, + 2DIAGNOSTIC, 30, -5.094872522240e-01, 8.508021162484e-05, 3.2537e-01, 1.6961e-03, + 2DIAGNOSTIC, 31, -5.094873690178e-01, 6.917172496266e-05, 3.2706e-01, 1.6940e-03, + 2DIAGNOSTIC, 32, -5.094875663857e-01, 4.945961111683e-05, 3.2872e-01, 1.6549e-03, + 2DIAGNOSTIC, 33, -5.094878997645e-01, 2.868397674429e-05, 3.3092e-01, 2.1989e-03, + 2DIAGNOSTIC, 34, -5.094884624558e-01, 9.143536648520e-06, 3.3325e-01, 2.3289e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.902052744307e-01, 1.797693134862e+308, 5.8369e-01, 2.5045e-01, + 2DIAGNOSTIC, 2, -3.897556567991e-01, 1.797693134862e+308, 5.8599e-01, 2.2969e-03, + 2DIAGNOSTIC, 3, -3.903549875870e-01, 1.797693134862e+308, 5.8827e-01, 2.2779e-03, + 2DIAGNOSTIC, 4, -3.914862976625e-01, 1.797693134862e+308, 5.9046e-01, 2.1892e-03, + 2DIAGNOSTIC, 5, -3.920043266132e-01, 1.797693134862e+308, 5.9261e-01, 2.1520e-03, + 2DIAGNOSTIC, 6, -3.940035564937e-01, 1.797693134862e+308, 5.9476e-01, 2.1501e-03, + 2DIAGNOSTIC, 7, -4.071786264380e-01, 1.797693134862e+308, 5.9685e-01, 2.0869e-03, + 2DIAGNOSTIC, 8, -4.174494547341e-01, 1.797693134862e+308, 5.9931e-01, 2.4641e-03, + 2DIAGNOSTIC, 9, -4.222735666178e-01, 1.797693134862e+308, 6.0142e-01, 2.1040e-03, + 2DIAGNOSTIC, 10, -4.266427055485e-01, 6.471709807753e-03, 6.0416e-01, 2.7449e-03, + 2DIAGNOSTIC, 11, -4.353308128778e-01, 7.205769220254e-03, 6.0679e-01, 2.6340e-03, + 2DIAGNOSTIC, 12, -4.400606460580e-01, 7.386739075098e-03, 6.0995e-01, 3.1590e-03, + 2DIAGNOSTIC, 13, -4.421078598305e-01, 7.003082370339e-03, 6.1275e-01, 2.7952e-03, + 2DIAGNOSTIC, 14, -4.428856107362e-01, 6.149944238927e-03, 6.1495e-01, 2.1970e-03, + 2DIAGNOSTIC, 15, -4.434347584519e-01, 4.918190856715e-03, 6.1833e-01, 3.3851e-03, + 2DIAGNOSTIC, 16, -4.422046940037e-01, 3.420761903828e-03, 6.2082e-01, 2.4929e-03, + 2DIAGNOSTIC, 17, -4.422453261736e-01, 2.315077332364e-03, 6.2329e-01, 2.4700e-03, + 2DIAGNOSTIC, 18, -4.426904021386e-01, 1.528848418220e-03, 6.2577e-01, 2.4750e-03, + 2DIAGNOSTIC, 19, -4.416862856895e-01, 8.245469913735e-04, 6.2825e-01, 2.4822e-03, + 2DIAGNOSTIC, 20, -4.416933625665e-01, 2.607398496765e-04, 6.3074e-01, 2.4900e-03, + 2DIAGNOSTIC, 21, -4.417143068957e-01, 5.062914041551e-06, 6.3292e-01, 2.1782e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.261552719907e-01, 1.797693134862e+308, 9.0965e-01, 2.7674e-01, + 2DIAGNOSTIC, 2, -3.265485458093e-01, 1.797693134862e+308, 9.2236e-01, 1.2708e-02, + 2DIAGNOSTIC, 3, -3.271046246503e-01, 1.797693134862e+308, 9.3496e-01, 1.2598e-02, + 2DIAGNOSTIC, 4, -3.275880386648e-01, 1.797693134862e+308, 9.4755e-01, 1.2591e-02, + 2DIAGNOSTIC, 5, -3.280973204859e-01, 1.797693134862e+308, 9.6022e-01, 1.2668e-02, + 2DIAGNOSTIC, 6, -3.288360631781e-01, 1.797693134862e+308, 9.7458e-01, 1.4362e-02, + 2DIAGNOSTIC, 7, -3.291771045145e-01, 1.797693134862e+308, 9.8970e-01, 1.5115e-02, + 2DIAGNOSTIC, 8, -3.298442049583e-01, 1.797693134862e+308, 1.0022e+00, 1.2522e-02, + 2DIAGNOSTIC, 9, -3.387349269750e-01, 1.797693134862e+308, 1.0159e+00, 1.3732e-02, + 2DIAGNOSTIC, 10, -3.452296384832e-01, 2.796595007762e-03, 1.0286e+00, 1.2629e-02, + 2DIAGNOSTIC, 11, -3.504169159803e-01, 3.763686583653e-03, 1.0433e+00, 1.4709e-02, + 2DIAGNOSTIC, 12, -3.544955712576e-01, 4.542839423485e-03, 1.0585e+00, 1.5183e-02, + 2DIAGNOSTIC, 13, -3.559518131755e-01, 4.917429518670e-03, 1.0730e+00, 1.4483e-02, + 2DIAGNOSTIC, 14, -3.671674231464e-01, 5.476729005637e-03, 1.0869e+00, 1.3948e-02, + 2DIAGNOSTIC, 15, -3.885598821453e-01, 6.628103746306e-03, 1.1021e+00, 1.5207e-02, + 2DIAGNOSTIC, 16, -3.931431536308e-01, 7.260560344090e-03, 1.1234e+00, 2.1336e-02, + 2DIAGNOSTIC, 17, -3.950029996341e-01, 7.269367468146e-03, 1.1368e+00, 1.3371e-02, + 2DIAGNOSTIC, 18, -3.967350925593e-01, 6.724955419801e-03, 1.1502e+00, 1.3393e-02, + 2DIAGNOSTIC, 19, -4.002057066401e-01, 6.134937351295e-03, 1.1661e+00, 1.5935e-02, + 2DIAGNOSTIC, 20, -4.056864235499e-01, 5.497964458979e-03, 1.1817e+00, 1.5549e-02, + 2DIAGNOSTIC, 21, -4.151229148719e-01, 4.961182586535e-03, 1.1947e+00, 1.3040e-02, + 2DIAGNOSTIC, 22, -4.269771775230e-01, 4.592407343138e-03, 1.2111e+00, 1.6391e-02, + 2DIAGNOSTIC, 23, -4.467715269658e-01, 4.538765293402e-03, 1.2320e+00, 2.0840e-02, + 2DIAGNOSTIC, 24, -4.539442577604e-01, 4.627526345905e-03, 1.2464e+00, 1.4406e-02, + 2DIAGNOSTIC, 25, -4.598349345471e-01, 5.106864681264e-03, 1.2592e+00, 1.2804e-02, + 2DIAGNOSTIC, 26, -4.639450245906e-01, 5.316859561919e-03, 1.2716e+00, 1.2451e-02, + 2DIAGNOSTIC, 27, -4.717532281300e-01, 5.271242389396e-03, 1.2873e+00, 1.5659e-02, + 2DIAGNOSTIC, 28, -4.749927406116e-01, 4.857511537780e-03, 1.3010e+00, 1.3719e-02, + 2DIAGNOSTIC, 29, -4.768956381341e-01, 4.159632447590e-03, 1.3139e+00, 1.2853e-02, + 2DIAGNOSTIC, 30, -4.878448773892e-01, 3.529024491486e-03, 1.3263e+00, 1.2465e-02, + 2DIAGNOSTIC, 31, -4.913745169198e-01, 2.911383357611e-03, 1.3480e+00, 2.1717e-02, + 2DIAGNOSTIC, 32, -4.923168068260e-01, 2.343939831385e-03, 1.3606e+00, 1.2557e-02, + 2DIAGNOSTIC, 33, -4.931327829565e-01, 2.043786024429e-03, 1.3735e+00, 1.2888e-02, + 2DIAGNOSTIC, 34, -4.951047765896e-01, 1.762018856517e-03, 1.3859e+00, 1.2463e-02, + 2DIAGNOSTIC, 35, -5.027198276966e-01, 1.599795076734e-03, 1.3992e+00, 1.3206e-02, + 2DIAGNOSTIC, 36, -5.130240975556e-01, 1.567317843737e-03, 1.4153e+00, 1.6154e-02, + 2DIAGNOSTIC, 37, -5.209972693784e-01, 1.681559128936e-03, 1.4311e+00, 1.5798e-02, + 2DIAGNOSTIC, 38, -5.247992251599e-01, 1.758516543200e-03, 1.4435e+00, 1.2358e-02, + 2DIAGNOSTIC, 39, -5.446987341664e-01, 2.040031145194e-03, 1.4579e+00, 1.4465e-02, + 2DIAGNOSTIC, 40, -5.759931003558e-01, 2.808164306971e-03, 1.4704e+00, 1.2439e-02, + 2DIAGNOSTIC, 41, -5.801002028565e-01, 3.370558373886e-03, 1.4884e+00, 1.8083e-02, + 2DIAGNOSTIC, 42, -5.823137715434e-01, 3.635325633683e-03, 1.5057e+00, 1.7292e-02, + 2DIAGNOSTIC, 43, -5.826709040538e-01, 3.565124587999e-03, 1.5192e+00, 1.3441e-02, + 2DIAGNOSTIC, 44, -5.835987829874e-01, 3.198818672672e-03, 1.5350e+00, 1.5841e-02, + 2DIAGNOSTIC, 45, -5.839967071856e-01, 2.655126648469e-03, 1.5472e+00, 1.2179e-02, + 2DIAGNOSTIC, 46, -5.842148188248e-01, 2.036794148753e-03, 1.5594e+00, 1.2213e-02, + 2DIAGNOSTIC, 47, -5.842786213571e-01, 1.376704014399e-03, 1.5738e+00, 1.4361e-02, + 2DIAGNOSTIC, 48, -5.844531249951e-01, 6.722696693306e-04, 1.5886e+00, 1.4775e-02, + 2DIAGNOSTIC, 49, -5.846383804873e-01, 1.888007953692e-04, 1.6054e+00, 1.6845e-02, + 2DIAGNOSTIC, 50, -5.849316874194e-01, 1.069123417402e-04, 1.6201e+00, 1.4738e-02, + 2DIAGNOSTIC, 51, -5.850415835014e-01, 6.989091603508e-05, 1.6333e+00, 1.3202e-02, + 2DIAGNOSTIC, 52, -5.850979099711e-01, 5.523871368930e-05, 1.6479e+00, 1.4593e-02, + 2DIAGNOSTIC, 53, -5.851982165510e-01, 4.120347588239e-05, 1.6625e+00, 1.4603e-02, + 2DIAGNOSTIC, 54, -5.852150755707e-01, 3.454386449946e-05, 1.6766e+00, 1.4077e-02, + 2DIAGNOSTIC, 55, -5.852379695313e-01, 2.955019600284e-05, 1.6887e+00, 1.2141e-02, + 2DIAGNOSTIC, 56, -5.852825156945e-01, 2.488745987319e-05, 1.7026e+00, 1.3802e-02, + 2DIAGNOSTIC, 57, -5.854157510106e-01, 2.020166909163e-05, 1.7291e+00, 2.6583e-02, + 2DIAGNOSTIC, 58, -5.854221783555e-01, 1.567797652632e-05, 1.7429e+00, 1.3717e-02, + 2DIAGNOSTIC, 59, -5.854118634997e-01, 1.163796713534e-05, 1.7545e+00, 1.1668e-02, + 2DIAGNOSTIC, 60, -5.854030879731e-01, 9.557371052234e-06, 1.7660e+00, 1.1505e-02, + 2DIAGNOSTIC, 61, -5.853963204295e-01, 7.701351486297e-06, 1.7795e+00, 1.3520e-02, + 2DIAGNOSTIC, 62, -5.854019198874e-01, 5.787707455997e-06, 1.7917e+00, 1.2190e-02, + 2DIAGNOSTIC, 63, -5.854080244165e-01, 4.447300375677e-06, 1.8054e+00, 1.3645e-02, + 2DIAGNOSTIC, 64, -5.853576817355e-01, 2.500347878163e-06, 1.8191e+00, 1.3746e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.959557982262e-01, 1.797693134862e+308, 2.2432e+00, 4.2403e-01, + 2DIAGNOSTIC, 2, -4.960995599059e-01, 1.797693134862e+308, 2.3299e+00, 8.6785e-02, + 2DIAGNOSTIC, 3, -4.961296470312e-01, 1.797693134862e+308, 2.4177e+00, 8.7731e-02, + 2DIAGNOSTIC, 4, -4.961475055206e-01, 1.797693134862e+308, 2.5191e+00, 1.0142e-01, + 2DIAGNOSTIC, 5, -4.961778143521e-01, 1.797693134862e+308, 2.6065e+00, 8.7457e-02, + 2DIAGNOSTIC, 6, -4.962730367744e-01, 1.797693134862e+308, 2.7056e+00, 9.9095e-02, + 2DIAGNOSTIC, 7, -4.963613055038e-01, 1.797693134862e+308, 2.8021e+00, 9.6480e-02, + 2DIAGNOSTIC, 8, -4.964929188905e-01, 1.797693134862e+308, 2.8972e+00, 9.5123e-02, + 2DIAGNOSTIC, 9, -4.965801966985e-01, 1.797693134862e+308, 2.9922e+00, 9.4978e-02, + 2DIAGNOSTIC, 10, -4.965900640010e-01, 8.477414396024e-05, 3.1042e+00, 1.1199e-01, + 2DIAGNOSTIC, 11, -4.965901392480e-01, 7.360329467750e-05, 3.2603e+00, 1.5607e-01, + 2DIAGNOSTIC, 12, -4.965919241423e-01, 6.485497002338e-05, 3.3752e+00, 1.1489e-01, + 2DIAGNOSTIC, 13, -4.965907181996e-01, 5.304913529690e-05, 3.4756e+00, 1.0040e-01, + 2DIAGNOSTIC, 14, -4.965894855222e-01, 3.900539604565e-05, 3.5630e+00, 8.7393e-02, + 2DIAGNOSTIC, 15, -4.965869814891e-01, 2.454426662826e-05, 3.6481e+00, 8.5099e-02, + 2DIAGNOSTIC, 16, -4.965845440919e-01, 1.317242231913e-05, 3.7582e+00, 1.1018e-01, + 2DIAGNOSTIC, 17, -4.965846730681e-01, 4.999994994231e-06, 3.8398e+00, 8.1576e-02, + 2DIAGNOSTIC, 18, -4.965848932389e-01, 1.562593399465e-06, 3.9412e+00, 1.0137e-01, + 2DIAGNOSTIC, 19, -4.965864794969e-01, 1.175915229613e-06, 4.0335e+00, 9.2291e-02, + 2DIAGNOSTIC, 20, -4.965841628025e-01, 1.090843384656e-06, 4.1211e+00, 8.7572e-02, + 2DIAGNOSTIC, 21, -4.965872457894e-01, 1.148010116733e-06, 4.2259e+00, 1.0484e-01, + 2DIAGNOSTIC, 22, -4.965861142834e-01, 1.248529387425e-06, 4.3302e+00, 1.0434e-01, + 2DIAGNOSTIC, 23, -4.965862820552e-01, 1.332644460318e-06, 4.4352e+00, 1.0493e-01, + 2DIAGNOSTIC, 24, -4.965850636825e-01, 1.357414606683e-06, 4.5403e+00, 1.0517e-01, + 2DIAGNOSTIC, 25, -4.965824450682e-01, 1.262562300673e-06, 4.8861e+00, 3.4572e-01, + 2DIAGNOSTIC, 26, -4.965824450682e-01, 1.123369232477e-06, 5.0477e+00, 1.6164e-01, + 2DIAGNOSTIC, 27, -4.965824450682e-01, 1.005203908229e-06, 5.1498e+00, 1.0206e-01, + Elapsed time (stage 0): 5.3007e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.244183259508e-01, 1.797693134862e+308, 2.0284e-01, 2.0284e-01, + 2DIAGNOSTIC, 2, -8.270167266270e-01, 1.797693134862e+308, 2.0414e-01, 1.3020e-03, + 2DIAGNOSTIC, 3, -8.306570969325e-01, 1.797693134862e+308, 2.0544e-01, 1.3011e-03, + 2DIAGNOSTIC, 4, -8.373566983221e-01, 1.797693134862e+308, 2.0669e-01, 1.2481e-03, + 2DIAGNOSTIC, 5, -8.463123421812e-01, 1.797693134862e+308, 2.0794e-01, 1.2529e-03, + 2DIAGNOSTIC, 6, -8.587099366798e-01, 1.797693134862e+308, 2.0946e-01, 1.5180e-03, + 2DIAGNOSTIC, 7, -8.646767018753e-01, 1.797693134862e+308, 2.1118e-01, 1.7200e-03, + 2DIAGNOSTIC, 8, -8.726846717232e-01, 1.797693134862e+308, 2.1347e-01, 2.2881e-03, + 2DIAGNOSTIC, 9, -8.752206493071e-01, 1.797693134862e+308, 2.1502e-01, 1.5569e-03, + 2DIAGNOSTIC, 10, -8.817378238567e-01, 4.798812332782e-03, 2.1687e-01, 1.8480e-03, + 2DIAGNOSTIC, 11, -8.902007505229e-01, 4.464058981216e-03, 2.1872e-01, 1.8430e-03, + 2DIAGNOSTIC, 12, -8.965432907401e-01, 4.027881378803e-03, 2.2042e-01, 1.6999e-03, + 2DIAGNOSTIC, 13, -9.016537894507e-01, 3.519158406214e-03, 2.2172e-01, 1.3089e-03, + 2DIAGNOSTIC, 14, -9.179804557001e-01, 3.302896289815e-03, 2.2338e-01, 1.6601e-03, + 2DIAGNOSTIC, 15, -9.270875277126e-01, 3.195092157367e-03, 2.2551e-01, 2.1210e-03, + 2DIAGNOSTIC, 16, -9.298074006736e-01, 3.112565313042e-03, 2.2710e-01, 1.5969e-03, + 2DIAGNOSTIC, 17, -9.313500197904e-01, 2.898772152088e-03, 2.2938e-01, 2.2750e-03, + 2DIAGNOSTIC, 18, -9.340040208420e-01, 2.636181752751e-03, 2.3120e-01, 1.8239e-03, + 2DIAGNOSTIC, 19, -9.347072551857e-01, 2.208778367086e-03, 2.3374e-01, 2.5392e-03, + 2DIAGNOSTIC, 20, -9.400415241742e-01, 1.807205102224e-03, 2.3611e-01, 2.3739e-03, + 2DIAGNOSTIC, 21, -9.402407613099e-01, 1.409658076764e-03, 2.3781e-01, 1.6949e-03, + 2DIAGNOSTIC, 22, -9.413663365162e-01, 1.030568983002e-03, 2.3961e-01, 1.7979e-03, + 2DIAGNOSTIC, 23, -9.423852850564e-01, 6.706424356170e-04, 2.4104e-01, 1.4291e-03, + 2DIAGNOSTIC, 24, -9.430550314869e-01, 5.010743560565e-04, 2.4249e-01, 1.4510e-03, + 2DIAGNOSTIC, 25, -9.445548107010e-01, 4.320565147097e-04, 2.4400e-01, 1.5121e-03, + 2DIAGNOSTIC, 26, -9.455373861584e-01, 3.726145056714e-04, 2.4533e-01, 1.3301e-03, + 2DIAGNOSTIC, 27, -9.491942926749e-01, 3.435426017548e-04, 2.4764e-01, 2.3129e-03, + 2DIAGNOSTIC, 28, -9.509127391226e-01, 3.330628689022e-04, 2.5107e-01, 3.4261e-03, + 2DIAGNOSTIC, 29, -9.510463689315e-01, 2.995843248588e-04, 2.5304e-01, 1.9720e-03, + 2DIAGNOSTIC, 30, -9.519876468211e-01, 3.066109840216e-04, 2.5500e-01, 1.9631e-03, + 2DIAGNOSTIC, 31, -9.528927333385e-01, 2.950088137709e-04, 2.5674e-01, 1.7328e-03, + 2DIAGNOSTIC, 32, -9.532762460594e-01, 2.703082056903e-04, 2.5820e-01, 1.4641e-03, + 2DIAGNOSTIC, 33, -9.536981746844e-01, 2.351769414925e-04, 2.5975e-01, 1.5459e-03, + 2DIAGNOSTIC, 34, -9.543359345672e-01, 1.922074794174e-04, 2.6123e-01, 1.4820e-03, + 2DIAGNOSTIC, 35, -9.553363587524e-01, 1.560465349970e-04, 2.6268e-01, 1.4532e-03, + 2DIAGNOSTIC, 36, -9.583430700454e-01, 1.406908229750e-04, 2.6435e-01, 1.6670e-03, + 2DIAGNOSTIC, 37, -9.595004140817e-01, 1.524124456044e-04, 2.6681e-01, 2.4660e-03, + 2DIAGNOSTIC, 38, -9.608638905810e-01, 1.744685478627e-04, 2.6839e-01, 1.5731e-03, + 2DIAGNOSTIC, 39, -9.611867632950e-01, 1.824236995697e-04, 2.6985e-01, 1.4622e-03, + 2DIAGNOSTIC, 40, -9.622139103149e-01, 1.877361589820e-04, 2.7202e-01, 2.1682e-03, + 2DIAGNOSTIC, 41, -9.639180348451e-01, 1.941801913457e-04, 2.7351e-01, 1.4961e-03, + 2DIAGNOSTIC, 42, -9.640902355479e-01, 1.855369241616e-04, 2.7495e-01, 1.4369e-03, + 2DIAGNOSTIC, 43, -9.653348470400e-01, 1.719577021528e-04, 2.7688e-01, 1.9250e-03, + 2DIAGNOSTIC, 44, -9.655213563875e-01, 1.484889270698e-04, 2.7828e-01, 1.4000e-03, + 2DIAGNOSTIC, 45, -9.658930648478e-01, 1.209457296511e-04, 2.8018e-01, 1.9031e-03, + 2DIAGNOSTIC, 46, -9.661760389267e-01, 1.049178985247e-04, 2.8253e-01, 2.3460e-03, + 2DIAGNOSTIC, 47, -9.656898099274e-01, 8.380518345353e-05, 2.8456e-01, 2.0368e-03, + 2DIAGNOSTIC, 48, -9.660813677255e-01, 6.707581563948e-05, 2.8635e-01, 1.7891e-03, + 2DIAGNOSTIC, 49, -9.661850380662e-01, 4.719623134730e-05, 2.8792e-01, 1.5650e-03, + 2DIAGNOSTIC, 50, -9.665349669246e-01, 3.187236238503e-05, 2.8948e-01, 1.5590e-03, + 2DIAGNOSTIC, 51, -9.673279412790e-01, 2.920107286548e-05, 2.9136e-01, 1.8861e-03, + 2DIAGNOSTIC, 52, -9.668916587807e-01, 2.212122931902e-05, 2.9315e-01, 1.7879e-03, + 2DIAGNOSTIC, 53, -9.669728272151e-01, 2.105164525153e-05, 2.9476e-01, 1.6110e-03, + 2DIAGNOSTIC, 54, -9.671564750358e-01, 2.007455663655e-05, 2.9620e-01, 1.4439e-03, + 2DIAGNOSTIC, 55, -9.672974565733e-01, 1.995316225891e-05, 2.9766e-01, 1.4589e-03, + 2DIAGNOSTIC, 56, -9.673539446110e-01, 1.986321656996e-05, 2.9901e-01, 1.3430e-03, + 2DIAGNOSTIC, 57, -9.673894684933e-01, 1.553217216952e-05, 3.0052e-01, 1.5099e-03, + 2DIAGNOSTIC, 58, -9.674767167432e-01, 1.251499162004e-05, 3.0196e-01, 1.4460e-03, + 2DIAGNOSTIC, 59, -9.682808507203e-01, 1.307124607152e-05, 3.0452e-01, 2.5539e-03, + 2DIAGNOSTIC, 60, -9.682972803566e-01, 1.400193844266e-05, 3.0584e-01, 1.3220e-03, + 2DIAGNOSTIC, 61, -9.683003655932e-01, 1.770017537694e-05, 3.0721e-01, 1.3740e-03, + 2DIAGNOSTIC, 62, -9.683203900345e-01, 1.765527467554e-05, 3.0875e-01, 1.5359e-03, + 2DIAGNOSTIC, 63, -9.683468220750e-01, 1.644635571857e-05, 3.1050e-01, 1.7550e-03, + 2DIAGNOSTIC, 64, -9.683502711260e-01, 1.454937134306e-05, 3.1196e-01, 1.4548e-03, + 2DIAGNOSTIC, 65, -9.683574845972e-01, 1.204109189719e-05, 3.1398e-01, 2.0261e-03, + 2DIAGNOSTIC, 66, -9.683575681164e-01, 8.821107459093e-06, 3.1531e-01, 1.3239e-03, + 2DIAGNOSTIC, 67, -9.683576368917e-01, 5.091974314322e-06, 3.1660e-01, 1.2910e-03, + 2DIAGNOSTIC, 68, -9.683578682045e-01, 1.318741819901e-06, 3.1799e-01, 1.3900e-03, + 2DIAGNOSTIC, 69, -9.683586586926e-01, 1.106836821411e-06, 3.1933e-01, 1.3390e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.327090328845e-01, 1.797693134862e+308, 5.3444e-01, 2.1511e-01, + 2DIAGNOSTIC, 2, -8.327519715349e-01, 1.797693134862e+308, 5.3647e-01, 2.0270e-03, + 2DIAGNOSTIC, 3, -8.348348052251e-01, 1.797693134862e+308, 5.3842e-01, 1.9529e-03, + 2DIAGNOSTIC, 4, -8.364569008732e-01, 1.797693134862e+308, 5.4035e-01, 1.9362e-03, + 2DIAGNOSTIC, 5, -8.403733825483e-01, 1.797693134862e+308, 5.4266e-01, 2.3060e-03, + 2DIAGNOSTIC, 6, -8.467918203092e-01, 1.797693134862e+308, 5.4507e-01, 2.4061e-03, + 2DIAGNOSTIC, 7, -8.469170401446e-01, 1.797693134862e+308, 5.4710e-01, 2.0311e-03, + 2DIAGNOSTIC, 8, -8.509103442272e-01, 1.797693134862e+308, 5.4916e-01, 2.0640e-03, + 2DIAGNOSTIC, 9, -8.542005057155e-01, 1.797693134862e+308, 5.5149e-01, 2.3258e-03, + 2DIAGNOSTIC, 10, -8.568545283816e-01, 2.029190573732e-03, 5.5595e-01, 4.4630e-03, + 2DIAGNOSTIC, 11, -8.571764359024e-01, 1.870880981771e-03, 5.5818e-01, 2.2340e-03, + 2DIAGNOSTIC, 12, -8.575928157317e-01, 1.586484276010e-03, 5.6101e-01, 2.8279e-03, + 2DIAGNOSTIC, 13, -8.578686134984e-01, 1.266004499806e-03, 5.6425e-01, 3.2349e-03, + 2DIAGNOSTIC, 14, -8.580958192635e-01, 9.188458716614e-04, 5.6745e-01, 3.2051e-03, + 2DIAGNOSTIC, 15, -8.586426486409e-01, 6.307547250376e-04, 5.7046e-01, 3.0041e-03, + 2DIAGNOSTIC, 16, -8.595063150570e-01, 4.753810116755e-04, 5.7287e-01, 2.4149e-03, + 2DIAGNOSTIC, 17, -8.608328039672e-01, 3.224077250983e-04, 5.7525e-01, 2.3792e-03, + 2DIAGNOSTIC, 18, -8.620830228842e-01, 2.528788447605e-04, 5.7767e-01, 2.4199e-03, + 2DIAGNOSTIC, 19, -8.641503344712e-01, 2.602915062057e-04, 5.8008e-01, 2.4090e-03, + 2DIAGNOSTIC, 20, -8.701042847467e-01, 3.858419527584e-04, 5.8351e-01, 3.4339e-03, + 2DIAGNOSTIC, 21, -8.710265495573e-01, 4.807503127715e-04, 5.8623e-01, 2.7130e-03, + 2DIAGNOSTIC, 22, -8.710497001726e-01, 5.295997721995e-04, 5.9146e-01, 5.2369e-03, + 2DIAGNOSTIC, 23, -8.711871913021e-01, 5.319926208177e-04, 5.9407e-01, 2.6090e-03, + 2DIAGNOSTIC, 24, -8.708676409531e-01, 4.827407880474e-04, 5.9641e-01, 2.3360e-03, + 2DIAGNOSTIC, 25, -8.709701231508e-01, 3.997714409542e-04, 5.9875e-01, 2.3448e-03, + 2DIAGNOSTIC, 26, -8.711286313233e-01, 2.984806504923e-04, 6.0139e-01, 2.6410e-03, + 2DIAGNOSTIC, 27, -8.711335575993e-01, 1.940938009156e-04, 6.0373e-01, 2.3320e-03, + 2DIAGNOSTIC, 28, -8.712031601915e-01, 9.507595881472e-05, 6.0637e-01, 2.6460e-03, + 2DIAGNOSTIC, 29, -8.714545208109e-01, 1.885490559200e-05, 6.0898e-01, 2.6112e-03, + 2DIAGNOSTIC, 30, -8.713059583119e-01, 9.845682595017e-06, 6.1137e-01, 2.3830e-03, + 2DIAGNOSTIC, 31, -8.719358757419e-01, 1.717876817205e-05, 6.1377e-01, 2.4040e-03, + 2DIAGNOSTIC, 32, -8.721795239199e-01, 2.504053034873e-05, 6.1654e-01, 2.7699e-03, + 2DIAGNOSTIC, 33, -8.723460615784e-01, 3.327692566821e-05, 6.1893e-01, 2.3921e-03, + 2DIAGNOSTIC, 34, -8.722166379645e-01, 3.362735316809e-05, 6.2134e-01, 2.4071e-03, + 2DIAGNOSTIC, 35, -8.727828006329e-01, 3.721588262526e-05, 6.2370e-01, 2.3651e-03, + 2DIAGNOSTIC, 36, -8.748760854925e-01, 5.760776633594e-05, 6.2636e-01, 2.6519e-03, + 2DIAGNOSTIC, 37, -8.753602774206e-01, 7.527887215285e-05, 6.2897e-01, 2.6159e-03, + 2DIAGNOSTIC, 38, -8.762667884121e-01, 9.355452773500e-05, 6.3345e-01, 4.4751e-03, + 2DIAGNOSTIC, 39, -8.762156302741e-01, 1.039863230225e-04, 6.3615e-01, 2.7070e-03, + 2DIAGNOSTIC, 40, -8.761033739789e-01, 1.018303198418e-04, 6.3858e-01, 2.4221e-03, + 2DIAGNOSTIC, 41, -8.757731296994e-01, 9.232072804585e-05, 6.4094e-01, 2.3592e-03, + 2DIAGNOSTIC, 42, -8.759048948061e-01, 7.740453050807e-05, 6.4328e-01, 2.3429e-03, + 2DIAGNOSTIC, 43, -8.758385722079e-01, 5.677982572046e-05, 6.4659e-01, 3.3100e-03, + 2DIAGNOSTIC, 44, -8.758948085409e-01, 3.130063660724e-05, 6.4948e-01, 2.8920e-03, + 2DIAGNOSTIC, 45, -8.757561887309e-01, 6.907655075675e-06, 6.5227e-01, 2.7850e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.208459929273e-01, 1.797693134862e+308, 8.9513e-01, 2.4286e-01, + 2DIAGNOSTIC, 2, -7.221432781480e-01, 1.797693134862e+308, 9.0875e-01, 1.3621e-02, + 2DIAGNOSTIC, 3, -7.235020238064e-01, 1.797693134862e+308, 9.2222e-01, 1.3474e-02, + 2DIAGNOSTIC, 4, -7.261726657308e-01, 1.797693134862e+308, 9.3597e-01, 1.3748e-02, + 2DIAGNOSTIC, 5, -7.289309282239e-01, 1.797693134862e+308, 9.4982e-01, 1.3845e-02, + 2DIAGNOSTIC, 6, -7.314097372263e-01, 1.797693134862e+308, 9.6551e-01, 1.5689e-02, + 2DIAGNOSTIC, 7, -7.364926096459e-01, 1.797693134862e+308, 9.9181e-01, 2.6303e-02, + 2DIAGNOSTIC, 8, -7.369712582456e-01, 1.797693134862e+308, 1.0057e+00, 1.3921e-02, + 2DIAGNOSTIC, 9, -7.374164304852e-01, 1.797693134862e+308, 1.0197e+00, 1.3926e-02, + 2DIAGNOSTIC, 10, -7.379645686053e-01, 1.760383169890e-03, 1.0339e+00, 1.4231e-02, + 2DIAGNOSTIC, 11, -7.387730766802e-01, 1.478707779883e-03, 1.0481e+00, 1.4164e-02, + 2DIAGNOSTIC, 12, -7.391720672205e-01, 1.164891808248e-03, 1.0643e+00, 1.6213e-02, + 2DIAGNOSTIC, 13, -7.393654227522e-01, 8.405508621919e-04, 1.0785e+00, 1.4277e-02, + 2DIAGNOSTIC, 14, -7.397284161859e-01, 5.718826623312e-04, 1.0968e+00, 1.8261e-02, + 2DIAGNOSTIC, 15, -7.398353327975e-01, 3.609681973716e-04, 1.1105e+00, 1.3663e-02, + 2DIAGNOSTIC, 16, -7.404235863018e-01, 2.144782677164e-04, 1.1278e+00, 1.7333e-02, + 2DIAGNOSTIC, 17, -7.409488130350e-01, 1.930867268014e-04, 1.1432e+00, 1.5446e-02, + 2DIAGNOSTIC, 18, -7.410148932937e-01, 1.680340701591e-04, 1.1566e+00, 1.3383e-02, + 2DIAGNOSTIC, 19, -7.410759700518e-01, 1.406949834951e-04, 1.1723e+00, 1.5635e-02, + 2DIAGNOSTIC, 20, -7.411143192639e-01, 1.142851831149e-04, 1.1866e+00, 1.4320e-02, + 2DIAGNOSTIC, 21, -7.411542843136e-01, 9.525840400828e-05, 1.2020e+00, 1.5449e-02, + 2DIAGNOSTIC, 22, -7.412874404533e-01, 7.838588654144e-05, 1.2174e+00, 1.5339e-02, + 2DIAGNOSTIC, 23, -7.412919084232e-01, 5.902420999783e-05, 1.2321e+00, 1.4730e-02, + 2DIAGNOSTIC, 24, -7.413106619006e-01, 4.224109832558e-05, 1.2451e+00, 1.2996e-02, + 2DIAGNOSTIC, 25, -7.413706779351e-01, 2.541061216751e-05, 1.2603e+00, 1.5187e-02, + 2DIAGNOSTIC, 26, -7.414577039256e-01, 1.739805587459e-05, 1.2755e+00, 1.5179e-02, + 2DIAGNOSTIC, 27, -7.415961649598e-01, 1.787950018881e-05, 1.2969e+00, 2.1484e-02, + 2DIAGNOSTIC, 28, -7.416213437663e-01, 1.796473264411e-05, 1.3127e+00, 1.5711e-02, + 2DIAGNOSTIC, 29, -7.416066678881e-01, 1.711736965121e-05, 1.3265e+00, 1.3836e-02, + 2DIAGNOSTIC, 30, -7.415947307976e-01, 1.517937061473e-05, 1.3439e+00, 1.7451e-02, + 2DIAGNOSTIC, 31, -7.415786764874e-01, 1.226535617863e-05, 1.3586e+00, 1.4668e-02, + 2DIAGNOSTIC, 32, -7.415631592563e-01, 9.867555568831e-06, 1.3715e+00, 1.2936e-02, + 2DIAGNOSTIC, 33, -7.415498058652e-01, 6.680116199788e-06, 1.3848e+00, 1.3288e-02, + 2DIAGNOSTIC, 34, -7.415400045664e-01, 3.259922152325e-06, 1.3986e+00, 1.3732e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.188397268593e-01, 1.797693134862e+308, 1.8306e+00, 4.3205e-01, + 2DIAGNOSTIC, 2, -6.197544781848e-01, 1.797693134862e+308, 1.9304e+00, 9.9805e-02, + 2DIAGNOSTIC, 3, -6.206029263415e-01, 1.797693134862e+308, 2.0280e+00, 9.7575e-02, + 2DIAGNOSTIC, 4, -6.212482870153e-01, 1.797693134862e+308, 2.1263e+00, 9.8334e-02, + 2DIAGNOSTIC, 5, -6.215581198528e-01, 1.797693134862e+308, 2.2243e+00, 9.7975e-02, + 2DIAGNOSTIC, 6, -6.217835618255e-01, 1.797693134862e+308, 2.3821e+00, 1.5782e-01, + 2DIAGNOSTIC, 7, -6.218656610785e-01, 1.797693134862e+308, 2.4779e+00, 9.5773e-02, + 2DIAGNOSTIC, 8, -6.218999654766e-01, 1.797693134862e+308, 2.5753e+00, 9.7390e-02, + 2DIAGNOSTIC, 9, -6.220036973840e-01, 1.797693134862e+308, 2.7450e+00, 1.6969e-01, + 2DIAGNOSTIC, 10, -6.220233351333e-01, 2.953116160204e-04, 2.8873e+00, 1.4235e-01, + 2DIAGNOSTIC, 11, -6.220219062201e-01, 1.780639566306e-04, 2.9830e+00, 9.5624e-02, + 2DIAGNOSTIC, 12, -6.220132420073e-01, 9.876267095200e-05, 3.0807e+00, 9.7713e-02, + 2DIAGNOSTIC, 13, -6.220125222606e-01, 5.240872460797e-05, 3.1871e+00, 1.0648e-01, + 2DIAGNOSTIC, 14, -6.220137716298e-01, 2.904511341555e-05, 3.2945e+00, 1.0736e-01, + 2DIAGNOSTIC, 15, -6.220147061135e-01, 1.565334264712e-05, 3.4024e+00, 1.0790e-01, + 2DIAGNOSTIC, 16, -6.220119103749e-01, 9.051680623651e-06, 3.5124e+00, 1.0996e-01, + 2DIAGNOSTIC, 17, -6.220130641124e-01, 4.839620279973e-06, 3.6183e+00, 1.0591e-01, + 2DIAGNOSTIC, 18, -6.220120330136e-01, 1.596673511947e-06, 3.7106e+00, 9.2301e-02, + 2DIAGNOSTIC, 19, -6.220096410666e-01, 1.132149234459e-06, 3.8234e+00, 1.1282e-01, + 2DIAGNOSTIC, 20, -6.220073910760e-01, 1.161869549571e-06, 3.9371e+00, 1.1369e-01, + 2DIAGNOSTIC, 21, -6.220069743813e-01, 1.195532320322e-06, 4.0493e+00, 1.1222e-01, + 2DIAGNOSTIC, 22, -6.220065398952e-01, 1.066767769599e-06, 4.1886e+00, 1.3934e-01, + Elapsed time (stage 1): 4.3256e+00 + + +Total elapsed time: 9.6293e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:11:45 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:11:45 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55d64b19e4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.485, 53.4596, -131.8] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d64b1a3fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2e789b1010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55d64b19f850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.485, 53.4596, -131.8] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d64b19cf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2e752f2010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55d64b1b6b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.485, 53.4596, -131.8] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d64b1a3550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2e71c33010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55d64b1bbd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.485, 53.4596, -131.8] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d64b1b9c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2e6e574010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55d64b1bdf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.485, 53.4596, -131.8] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d64b1bc3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2e6aeb5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55d64b1be540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.485, 53.4596, -131.8] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d64b1be4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2e677f6010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.657367000422e-01, 1.797693134862e+308, 1.9804e-01, 1.9804e-01, + 2DIAGNOSTIC, 2, -6.691350523495e-01, 1.797693134862e+308, 2.0011e-01, 2.0640e-03, + 2DIAGNOSTIC, 3, -6.742343601930e-01, 1.797693134862e+308, 2.0199e-01, 1.8890e-03, + 2DIAGNOSTIC, 4, -6.814174378058e-01, 1.797693134862e+308, 2.0395e-01, 1.9541e-03, + 2DIAGNOSTIC, 5, -6.894898805306e-01, 1.797693134862e+308, 2.0591e-01, 1.9581e-03, + 2DIAGNOSTIC, 6, -7.023431505112e-01, 1.797693134862e+308, 2.0822e-01, 2.3098e-03, + 2DIAGNOSTIC, 7, -7.046547861788e-01, 1.797693134862e+308, 2.1039e-01, 2.1741e-03, + 2DIAGNOSTIC, 8, -7.049060899066e-01, 1.797693134862e+308, 2.1229e-01, 1.8950e-03, + 2DIAGNOSTIC, 9, -7.050002268796e-01, 1.797693134862e+308, 2.1429e-01, 2.0061e-03, + 2DIAGNOSTIC, 10, -7.052451828762e-01, 4.341098367120e-03, 2.1658e-01, 2.2881e-03, + 2DIAGNOSTIC, 11, -7.057164948561e-01, 3.283229273571e-03, 2.1870e-01, 2.1219e-03, + 2DIAGNOSTIC, 12, -7.061420058424e-01, 2.241080236399e-03, 2.2187e-01, 3.1679e-03, + 2DIAGNOSTIC, 13, -7.062227240088e-01, 1.326179014229e-03, 2.2399e-01, 2.1219e-03, + 2DIAGNOSTIC, 14, -7.062821121562e-01, 6.347552956106e-04, 2.2637e-01, 2.3758e-03, + 2DIAGNOSTIC, 15, -7.064018162909e-01, 1.932682037787e-04, 2.2891e-01, 2.5411e-03, + 2DIAGNOSTIC, 16, -7.064156085133e-01, 1.166807570091e-04, 2.3141e-01, 2.4991e-03, + 2DIAGNOSTIC, 17, -7.064308681404e-01, 9.428546869417e-05, 2.3333e-01, 1.9231e-03, + 2DIAGNOSTIC, 18, -7.064417582083e-01, 7.196489618248e-05, 2.3531e-01, 1.9782e-03, + 2DIAGNOSTIC, 19, -7.064546809138e-01, 4.790375002119e-05, 2.3725e-01, 1.9391e-03, + 2DIAGNOSTIC, 20, -7.064711201430e-01, 2.711505284472e-05, 2.3993e-01, 2.6779e-03, + 2DIAGNOSTIC, 21, -7.064750452461e-01, 1.494391613790e-05, 2.4183e-01, 1.9062e-03, + 2DIAGNOSTIC, 22, -7.064757995956e-01, 1.052299299743e-05, 2.4376e-01, 1.9231e-03, + 2DIAGNOSTIC, 23, -7.064762622966e-01, 7.076890111167e-06, 2.4567e-01, 1.9181e-03, + 2DIAGNOSTIC, 24, -7.064768185076e-01, 4.347721595868e-06, 2.4785e-01, 2.1760e-03, + 2DIAGNOSTIC, 25, -7.064774602095e-01, 3.505177273891e-06, 2.5101e-01, 3.1581e-03, + 2DIAGNOSTIC, 26, -7.064775958304e-01, 2.733078983116e-06, 2.5344e-01, 2.4288e-03, + 2DIAGNOSTIC, 27, -7.064776000634e-01, 2.108400701743e-06, 2.5560e-01, 2.1601e-03, + 2DIAGNOSTIC, 28, -7.064776023936e-01, 1.598193776785e-06, 2.5774e-01, 2.1451e-03, + 2DIAGNOSTIC, 29, -7.064776048167e-01, 1.255557368102e-06, 2.5973e-01, 1.9841e-03, + 2DIAGNOSTIC, 30, -7.064776101040e-01, 1.142545776732e-06, 2.6165e-01, 1.9212e-03, + 2DIAGNOSTIC, 31, -7.064776320003e-01, 1.081338670335e-06, 2.6371e-01, 2.0599e-03, + 2DIAGNOSTIC, 32, -7.064777029060e-01, 1.029975874832e-06, 2.6575e-01, 2.0461e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.833790810336e-01, 1.797693134862e+308, 5.0034e-01, 2.3458e-01, + 2DIAGNOSTIC, 2, -5.842681506325e-01, 1.797693134862e+308, 5.1402e-01, 1.3681e-02, + 2DIAGNOSTIC, 3, -5.850910709740e-01, 1.797693134862e+308, 5.2766e-01, 1.3646e-02, + 2DIAGNOSTIC, 4, -5.858621178930e-01, 1.797693134862e+308, 5.4309e-01, 1.5429e-02, + 2DIAGNOSTIC, 5, -5.861248539298e-01, 1.797693134862e+308, 5.5684e-01, 1.3753e-02, + 2DIAGNOSTIC, 6, -5.862846932074e-01, 1.797693134862e+308, 5.7259e-01, 1.5745e-02, + 2DIAGNOSTIC, 7, -5.865555091532e-01, 1.797693134862e+308, 5.9889e-01, 2.6299e-02, + 2DIAGNOSTIC, 8, -5.865419819320e-01, 1.797693134862e+308, 6.1440e-01, 1.5510e-02, + 2DIAGNOSTIC, 9, -5.865922064083e-01, 1.797693134862e+308, 6.2791e-01, 1.3513e-02, + 2DIAGNOSTIC, 10, -5.866341557328e-01, 3.260578326812e-04, 6.4530e-01, 1.7384e-02, + 2DIAGNOSTIC, 11, -5.866464030822e-01, 2.004106521991e-04, 6.6650e-01, 2.1203e-02, + 2DIAGNOSTIC, 12, -5.866365429268e-01, 1.129933767125e-04, 6.8259e-01, 1.6096e-02, + 2DIAGNOSTIC, 13, -5.866261460426e-01, 5.879105182215e-05, 6.9705e-01, 1.4458e-02, + 2DIAGNOSTIC, 14, -5.866042339219e-01, 3.311489971800e-05, 7.1290e-01, 1.5846e-02, + 2DIAGNOSTIC, 15, -5.866093802713e-01, 1.664210229520e-05, 7.2657e-01, 1.3667e-02, + 2DIAGNOSTIC, 16, -5.865902716078e-01, 4.921360151816e-06, 7.4236e-01, 1.5797e-02, + 2DIAGNOSTIC, 17, -5.865978995957e-01, 2.312949127427e-06, 7.5819e-01, 1.5824e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.936242264544e-01, 1.797693134862e+308, 1.1415e+00, 3.8330e-01, + 2DIAGNOSTIC, 2, -4.941161149754e-01, 1.797693134862e+308, 1.2387e+00, 9.7212e-02, + 2DIAGNOSTIC, 3, -4.944380430544e-01, 1.797693134862e+308, 1.3373e+00, 9.8583e-02, + 2DIAGNOSTIC, 4, -4.945504965177e-01, 1.797693134862e+308, 1.4410e+00, 1.0371e-01, + 2DIAGNOSTIC, 5, -4.946080470907e-01, 1.797693134862e+308, 1.5393e+00, 9.8341e-02, + 2DIAGNOSTIC, 6, -4.946920380236e-01, 1.797693134862e+308, 1.6723e+00, 1.3296e-01, + 2DIAGNOSTIC, 7, -4.947049825021e-01, 1.797693134862e+308, 1.7681e+00, 9.5844e-02, + 2DIAGNOSTIC, 8, -4.947149391180e-01, 1.797693134862e+308, 1.8651e+00, 9.6911e-02, + 2DIAGNOSTIC, 9, -4.947386211067e-01, 1.797693134862e+308, 1.9590e+00, 9.3905e-02, + 2DIAGNOSTIC, 10, -4.948588114365e-01, 1.215083930011e-04, 2.0666e+00, 1.0764e-01, + 2DIAGNOSTIC, 11, -4.949467253184e-01, 7.511028801209e-05, 2.3442e+00, 2.7764e-01, + 2DIAGNOSTIC, 12, -4.949464771543e-01, 5.312745950423e-05, 2.4503e+00, 1.0608e-01, + 2DIAGNOSTIC, 13, -4.949452979144e-01, 4.421820001908e-05, 2.5565e+00, 1.0617e-01, + 2DIAGNOSTIC, 14, -4.949429790914e-01, 3.731504308715e-05, 2.6644e+00, 1.0786e-01, + 2DIAGNOSTIC, 15, -4.949454790869e-01, 3.026212173735e-05, 2.7850e+00, 1.2068e-01, + 2DIAGNOSTIC, 16, -4.949436703738e-01, 2.439315049564e-05, 2.8914e+00, 1.0635e-01, + 2DIAGNOSTIC, 17, -4.949417329100e-01, 1.758139346749e-05, 3.0007e+00, 1.0927e-01, + 2DIAGNOSTIC, 18, -4.949414979014e-01, 1.045962447228e-05, 3.1098e+00, 1.0910e-01, + 2DIAGNOSTIC, 19, -4.949411066276e-01, 3.914036251697e-06, 3.2055e+00, 9.5744e-02, + 2DIAGNOSTIC, 20, -4.949413564648e-01, 1.200280283588e-06, 3.3206e+00, 1.1506e-01, + 2DIAGNOSTIC, 21, -4.949393970564e-01, 1.131971996277e-06, 3.4325e+00, 1.1189e-01, + 2DIAGNOSTIC, 22, -4.949393615749e-01, 1.101915027855e-06, 3.5307e+00, 9.8275e-02, + 2DIAGNOSTIC, 23, -4.949401525477e-01, 1.098544643398e-06, 3.6395e+00, 1.0879e-01, + 2DIAGNOSTIC, 24, -4.949405520281e-01, 1.072078447420e-06, 3.7346e+00, 9.5112e-02, + 2DIAGNOSTIC, 25, -4.949405357633e-01, 1.129250358417e-06, 3.8556e+00, 1.2094e-01, + 2DIAGNOSTIC, 26, -4.949405059358e-01, 1.157046323239e-06, 3.9624e+00, 1.0680e-01, + 2DIAGNOSTIC, 27, -4.949371948514e-01, 1.077807031062e-06, 4.0688e+00, 1.0640e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.283505419044e-01, 1.797693134862e+308, 5.2974e+00, 1.2286e+00, + 2DIAGNOSTIC, 2, -4.283987009717e-01, 1.797693134862e+308, 5.8758e+00, 5.7843e-01, + 2DIAGNOSTIC, 3, -4.284390826960e-01, 1.797693134862e+308, 7.1758e+00, 1.3000e+00, + 2DIAGNOSTIC, 4, -4.284392997265e-01, 1.797693134862e+308, 7.8661e+00, 6.9029e-01, + 2DIAGNOSTIC, 5, -4.284392279375e-01, 1.797693134862e+308, 8.4934e+00, 6.2734e-01, + 2DIAGNOSTIC, 6, -4.284391295595e-01, 1.797693134862e+308, 9.0629e+00, 5.6947e-01, + 2DIAGNOSTIC, 7, -4.284390642567e-01, 1.797693134862e+308, 9.6328e+00, 5.6990e-01, + 2DIAGNOSTIC, 8, -4.284389103224e-01, 1.797693134862e+308, 1.0264e+01, 6.3143e-01, + 2DIAGNOSTIC, 9, -4.284386098162e-01, 1.797693134862e+308, 1.0912e+01, 6.4736e-01, + 2DIAGNOSTIC, 10, -4.284385860857e-01, 1.131797723011e-05, 1.1530e+01, 6.1871e-01, + 2DIAGNOSTIC, 11, -4.284384010082e-01, 5.221123686033e-06, 1.2091e+01, 5.6106e-01, + 2DIAGNOSTIC, 12, -4.284382917313e-01, 2.524033823559e-06, 1.2739e+01, 6.4721e-01, + 2DIAGNOSTIC, 13, -4.284384279187e-01, 2.320721749577e-06, 1.3378e+01, 6.3954e-01, + 2DIAGNOSTIC, 14, -4.284382712711e-01, 2.160656285444e-06, 1.4001e+01, 6.2313e-01, + 2DIAGNOSTIC, 15, -4.284380660029e-01, 2.020131969233e-06, 1.4671e+01, 6.6993e-01, + 2DIAGNOSTIC, 16, -4.284379674150e-01, 1.898434508804e-06, 1.5471e+01, 8.0033e-01, + 2DIAGNOSTIC, 17, -4.284378370048e-01, 1.791686247268e-06, 1.6109e+01, 6.3783e-01, + 2DIAGNOSTIC, 18, -4.284377023243e-01, 1.693626901500e-06, 1.6731e+01, 6.2166e-01, + 2DIAGNOSTIC, 19, -4.284375662507e-01, 1.597477435097e-06, 1.7295e+01, 5.6368e-01, + 2DIAGNOSTIC, 20, -4.284374374077e-01, 1.513372222192e-06, 1.7871e+01, 5.7621e-01, + 2DIAGNOSTIC, 21, -4.284374672865e-01, 1.439718916176e-06, 1.8415e+01, 5.4444e-01, + 2DIAGNOSTIC, 22, -4.284373710807e-01, 1.373251341842e-06, 1.9039e+01, 6.2346e-01, + 2DIAGNOSTIC, 23, -4.284372844191e-01, 1.320926835816e-06, 1.9593e+01, 5.5435e-01, + 2DIAGNOSTIC, 24, -4.284373849314e-01, 1.277446729953e-06, 2.0174e+01, 5.8048e-01, + 2DIAGNOSTIC, 25, -4.284375539445e-01, 1.240886001466e-06, 2.0750e+01, 5.7607e-01, + 2DIAGNOSTIC, 26, -4.284379832024e-01, 1.218416515798e-06, 2.1508e+01, 7.5846e-01, + 2DIAGNOSTIC, 27, -4.284376390657e-01, 1.186265403900e-06, 2.2122e+01, 6.1351e-01, + 2DIAGNOSTIC, 28, -4.284377093628e-01, 1.154642890216e-06, 2.2740e+01, 6.1849e-01, + 2DIAGNOSTIC, 29, -4.284374782253e-01, 1.115078675264e-06, 2.3366e+01, 6.2615e-01, + 2DIAGNOSTIC, 30, -4.284374202914e-01, 1.072161398039e-06, 2.3980e+01, 6.1411e-01, + 2DIAGNOSTIC, 31, -4.284373618020e-01, 1.030213197341e-06, 2.4601e+01, 6.2019e-01, + Elapsed time (stage 0): 2.4962e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.984900647339e-01, 1.797693134862e+308, 1.8102e-01, 1.8102e-01, + 2DIAGNOSTIC, 2, -7.002721204542e-01, 1.797693134862e+308, 1.8318e-01, 2.1601e-03, + 2DIAGNOSTIC, 3, -7.029350209513e-01, 1.797693134862e+308, 1.8528e-01, 2.1000e-03, + 2DIAGNOSTIC, 4, -7.063906415284e-01, 1.797693134862e+308, 1.8736e-01, 2.0800e-03, + 2DIAGNOSTIC, 5, -7.093549404848e-01, 1.797693134862e+308, 1.8949e-01, 2.1310e-03, + 2DIAGNOSTIC, 6, -7.113265595234e-01, 1.797693134862e+308, 1.9157e-01, 2.0821e-03, + 2DIAGNOSTIC, 7, -7.123326946473e-01, 1.797693134862e+308, 1.9356e-01, 1.9932e-03, + 2DIAGNOSTIC, 8, -7.125623986804e-01, 1.797693134862e+308, 1.9582e-01, 2.2552e-03, + 2DIAGNOSTIC, 9, -7.132376043209e-01, 1.797693134862e+308, 1.9804e-01, 2.2211e-03, + 2DIAGNOSTIC, 10, -7.147621848907e-01, 1.506498682723e-03, 2.0125e-01, 3.2160e-03, + 2DIAGNOSTIC, 11, -7.146326881231e-01, 1.138957464272e-03, 2.0394e-01, 2.6820e-03, + 2DIAGNOSTIC, 12, -7.145296453152e-01, 7.881415353442e-04, 2.0627e-01, 2.3391e-03, + 2DIAGNOSTIC, 13, -7.144290939509e-01, 4.992665016497e-04, 2.0837e-01, 2.0940e-03, + 2DIAGNOSTIC, 14, -7.140652903699e-01, 2.934230376238e-04, 2.1043e-01, 2.0602e-03, + 2DIAGNOSTIC, 15, -7.140144706060e-01, 1.647062657851e-04, 2.1278e-01, 2.3520e-03, + 2DIAGNOSTIC, 16, -7.140947328836e-01, 8.798732458896e-05, 2.1503e-01, 2.2490e-03, + 2DIAGNOSTIC, 17, -7.140814551156e-01, 3.625497700978e-05, 2.1758e-01, 2.5530e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.819577686542e-01, 1.797693134862e+308, 4.2769e-01, 2.1011e-01, + 2DIAGNOSTIC, 2, -5.831731912858e-01, 1.797693134862e+308, 4.4136e-01, 1.3666e-02, + 2DIAGNOSTIC, 3, -5.847293068253e-01, 1.797693134862e+308, 4.5510e-01, 1.3746e-02, + 2DIAGNOSTIC, 4, -5.862609439464e-01, 1.797693134862e+308, 4.6881e-01, 1.3705e-02, + 2DIAGNOSTIC, 5, -5.876748288847e-01, 1.797693134862e+308, 4.8251e-01, 1.3705e-02, + 2DIAGNOSTIC, 6, -5.886832202517e-01, 1.797693134862e+308, 4.9869e-01, 1.6176e-02, + 2DIAGNOSTIC, 7, -5.895854968269e-01, 1.797693134862e+308, 5.1804e-01, 1.9349e-02, + 2DIAGNOSTIC, 8, -5.896675777028e-01, 1.797693134862e+308, 5.3380e-01, 1.5762e-02, + 2DIAGNOSTIC, 9, -5.897543848930e-01, 1.797693134862e+308, 5.4761e-01, 1.3808e-02, + 2DIAGNOSTIC, 10, -5.898460700983e-01, 9.143630951523e-04, 5.6156e-01, 1.3947e-02, + 2DIAGNOSTIC, 11, -5.899899452701e-01, 6.547298388469e-04, 5.7588e-01, 1.4325e-02, + 2DIAGNOSTIC, 12, -5.900616472812e-01, 4.310268925294e-04, 5.9068e-01, 1.4803e-02, + 2DIAGNOSTIC, 13, -5.903110830837e-01, 2.698179560109e-04, 6.2398e-01, 3.3293e-02, + 2DIAGNOSTIC, 14, -5.903149573119e-01, 1.597854911267e-04, 6.4113e-01, 1.7151e-02, + 2DIAGNOSTIC, 15, -5.902917425043e-01, 9.441799803546e-05, 6.5601e-01, 1.4879e-02, + 2DIAGNOSTIC, 16, -5.902978642113e-01, 5.876460094924e-05, 6.7121e-01, 1.5205e-02, + 2DIAGNOSTIC, 17, -5.902786696892e-01, 4.710271018488e-05, 6.8814e-01, 1.6925e-02, + 2DIAGNOSTIC, 18, -5.902702698766e-01, 3.445200835021e-05, 7.0530e-01, 1.7161e-02, + 2DIAGNOSTIC, 19, -5.902614839376e-01, 2.207820061575e-05, 7.1998e-01, 1.4685e-02, + 2DIAGNOSTIC, 20, -5.902263518419e-01, 1.043908683782e-05, 7.3643e-01, 1.6447e-02, + 2DIAGNOSTIC, 21, -5.902288262068e-01, 2.493710276177e-06, 7.5332e-01, 1.6885e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.936308335564e-01, 1.797693134862e+308, 1.1437e+00, 3.9037e-01, + 2DIAGNOSTIC, 2, -4.941904306824e-01, 1.797693134862e+308, 1.2452e+00, 1.0154e-01, + 2DIAGNOSTIC, 3, -4.946662635121e-01, 1.797693134862e+308, 1.3462e+00, 1.0100e-01, + 2DIAGNOSTIC, 4, -4.949633852209e-01, 1.797693134862e+308, 1.4491e+00, 1.0289e-01, + 2DIAGNOSTIC, 5, -4.951549807410e-01, 1.797693134862e+308, 1.5512e+00, 1.0209e-01, + 2DIAGNOSTIC, 6, -4.952520403951e-01, 1.797693134862e+308, 1.6525e+00, 1.0125e-01, + 2DIAGNOSTIC, 7, -4.953246318698e-01, 1.797693134862e+308, 1.7701e+00, 1.1765e-01, + 2DIAGNOSTIC, 8, -4.954185797433e-01, 1.797693134862e+308, 1.9300e+00, 1.5989e-01, + 2DIAGNOSTIC, 9, -4.954453170328e-01, 1.797693134862e+308, 2.0479e+00, 1.1791e-01, + 2DIAGNOSTIC, 10, -4.954519440021e-01, 2.116394395236e-04, 2.1654e+00, 1.1753e-01, + 2DIAGNOSTIC, 11, -4.954543135143e-01, 1.294017469687e-04, 2.2677e+00, 1.0227e-01, + 2DIAGNOSTIC, 12, -4.954651144799e-01, 7.642590370864e-05, 2.3707e+00, 1.0294e-01, + 2DIAGNOSTIC, 13, -4.954858263414e-01, 4.657506765524e-05, 2.4748e+00, 1.0414e-01, + 2DIAGNOSTIC, 14, -4.955185845747e-01, 3.033014851533e-05, 2.5772e+00, 1.0238e-01, + 2DIAGNOSTIC, 15, -4.955620259072e-01, 2.264334390335e-05, 2.6960e+00, 1.1882e-01, + 2DIAGNOSTIC, 16, -4.956491040034e-01, 2.060129724898e-05, 2.9215e+00, 2.2552e-01, + 2DIAGNOSTIC, 17, -4.956491074801e-01, 1.940339528021e-05, 3.0518e+00, 1.3024e-01, + 2DIAGNOSTIC, 18, -4.956491083236e-01, 1.973371336652e-05, 3.1980e+00, 1.4627e-01, + 2DIAGNOSTIC, 19, -4.956491084157e-01, 1.919145913895e-05, 3.4951e+00, 2.9708e-01, + 2DIAGNOSTIC, 20, -4.956491084158e-01, 1.724354508122e-05, 3.7260e+00, 2.3089e-01, + 2DIAGNOSTIC, 21, -4.956491084158e-01, 1.405637634395e-05, 3.8439e+00, 1.1789e-01, + 2DIAGNOSTIC, 22, -4.956491084158e-01, 1.027476726793e-05, 3.9903e+00, 1.4646e-01, + 2DIAGNOSTIC, 23, -4.956491084158e-01, 6.538069307470e-06, 4.1145e+00, 1.2413e-01, + 2DIAGNOSTIC, 24, -4.956491084158e-01, 3.408328793718e-06, 4.2498e+00, 1.3531e-01, + 2DIAGNOSTIC, 25, -4.956491084158e-01, 1.273314983424e-06, 4.3832e+00, 1.3347e-01, + 2DIAGNOSTIC, 26, -4.956491084158e-01, 1.224217440553e-06, 4.5003e+00, 1.1706e-01, + 2DIAGNOSTIC, 27, -4.956491084158e-01, 1.178830137470e-06, 4.6345e+00, 1.3422e-01, + 2DIAGNOSTIC, 28, -4.956491084158e-01, 1.136703641567e-06, 4.7503e+00, 1.1578e-01, + 2DIAGNOSTIC, 29, -4.956491084158e-01, 1.097485810377e-06, 4.8694e+00, 1.1907e-01, + 2DIAGNOSTIC, 30, -4.956491084158e-01, 1.060883867247e-06, 4.9881e+00, 1.1869e-01, + 2DIAGNOSTIC, 31, -4.956491084158e-01, 1.026644531825e-06, 5.1099e+00, 1.2179e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.277958919732e-01, 1.797693134862e+308, 6.4431e+00, 1.3332e+00, + 2DIAGNOSTIC, 2, -4.281001524661e-01, 1.797693134862e+308, 7.0784e+00, 6.3533e-01, + 2DIAGNOSTIC, 3, -4.284086294734e-01, 1.797693134862e+308, 7.7048e+00, 6.2640e-01, + 2DIAGNOSTIC, 4, -4.285317710577e-01, 1.797693134862e+308, 8.4082e+00, 7.0345e-01, + 2DIAGNOSTIC, 5, -4.285787900469e-01, 1.797693134862e+308, 9.6404e+00, 1.2322e+00, + 2DIAGNOSTIC, 6, -4.285794938819e-01, 1.797693134862e+308, 1.0332e+01, 6.9127e-01, + 2DIAGNOSTIC, 7, -4.285799503819e-01, 1.797693134862e+308, 1.1047e+01, 7.1582e-01, + 2DIAGNOSTIC, 8, -4.285800419786e-01, 1.797693134862e+308, 1.1764e+01, 7.1614e-01, + 2DIAGNOSTIC, 9, -4.285803359353e-01, 1.797693134862e+308, 1.2602e+01, 8.3802e-01, + 2DIAGNOSTIC, 10, -4.285803303991e-01, 9.252963756698e-05, 1.3306e+01, 7.0438e-01, + 2DIAGNOSTIC, 11, -4.285800490001e-01, 4.297405614444e-05, 1.4031e+01, 7.2452e-01, + 2DIAGNOSTIC, 12, -4.285802210713e-01, 1.455032134862e-05, 1.4651e+01, 6.2035e-01, + 2DIAGNOSTIC, 13, -4.285803642082e-01, 5.022223649578e-06, 1.5439e+01, 7.8852e-01, + 2DIAGNOSTIC, 14, -4.285805094797e-01, 2.399303612247e-06, 1.6152e+01, 7.1280e-01, + 2DIAGNOSTIC, 15, -4.285804881348e-01, 2.192293524231e-06, 1.6925e+01, 7.7293e-01, + 2DIAGNOSTIC, 16, -4.285802427501e-01, 2.023714544386e-06, 1.7602e+01, 6.7683e-01, + 2DIAGNOSTIC, 17, -4.285802732575e-01, 1.891032023395e-06, 1.8292e+01, 6.8984e-01, + 2DIAGNOSTIC, 18, -4.285800166024e-01, 1.764444728734e-06, 1.8935e+01, 6.4279e-01, + 2DIAGNOSTIC, 19, -4.285799313683e-01, 1.658772733629e-06, 1.9556e+01, 6.2141e-01, + 2DIAGNOSTIC, 20, -4.285800244858e-01, 1.568469762250e-06, 2.0201e+01, 6.4463e-01, + 2DIAGNOSTIC, 21, -4.285803116750e-01, 1.488882913112e-06, 2.0905e+01, 7.0460e-01, + 2DIAGNOSTIC, 22, -4.285804316599e-01, 1.427480651087e-06, 2.1505e+01, 6.0020e-01, + 2DIAGNOSTIC, 23, -4.285807540103e-01, 1.386518748960e-06, 2.2200e+01, 6.9416e-01, + 2DIAGNOSTIC, 24, -4.285810592341e-01, 1.361033562478e-06, 2.2918e+01, 7.1857e-01, + 2DIAGNOSTIC, 25, -4.285807111125e-01, 1.324406359846e-06, 2.3636e+01, 7.1799e-01, + 2DIAGNOSTIC, 26, -4.285804700822e-01, 1.273515482382e-06, 2.4250e+01, 6.1334e-01, + 2DIAGNOSTIC, 27, -4.285806856583e-01, 1.228015185914e-06, 2.4947e+01, 6.9719e-01, + 2DIAGNOSTIC, 28, -4.285808811905e-01, 1.179307460415e-06, 2.5587e+01, 6.3998e-01, + 2DIAGNOSTIC, 29, -4.285806603176e-01, 1.122677871911e-06, 2.6216e+01, 6.2968e-01, + 2DIAGNOSTIC, 30, -4.285810439858e-01, 1.078298597010e-06, 2.6922e+01, 7.0603e-01, + 2DIAGNOSTIC, 31, -4.285812162722e-01, 1.044913811574e-06, 2.7614e+01, 6.9118e-01, + 2DIAGNOSTIC, 32, -4.285809467774e-01, 1.008362374960e-06, 2.8330e+01, 7.1671e-01, + Elapsed time (stage 1): 2.8723e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.075678590531e-01, 1.797693134862e+308, 2.5701e-01, 2.5701e-01, + 1DIAGNOSTIC, 2, -9.199527207507e-01, 1.797693134862e+308, 3.5309e-01, 9.6079e-02, + 1DIAGNOSTIC, 3, -9.294390696742e-01, 1.797693134862e+308, 4.4822e-01, 9.5136e-02, + 1DIAGNOSTIC, 4, -9.362333587884e-01, 1.797693134862e+308, 5.4480e-01, 9.6578e-02, + 1DIAGNOSTIC, 5, -9.412383622632e-01, 1.797693134862e+308, 6.4424e-01, 9.9442e-02, + 1DIAGNOSTIC, 6, -9.447590278513e-01, 1.797693134862e+308, 7.4314e-01, 9.8896e-02, + 1DIAGNOSTIC, 7, -9.477166324978e-01, 1.797693134862e+308, 8.4538e-01, 1.0224e-01, + 1DIAGNOSTIC, 8, -9.501565750232e-01, 1.797693134862e+308, 9.5072e-01, 1.0534e-01, + 1DIAGNOSTIC, 9, -9.521734693125e-01, 1.797693134862e+308, 1.0490e+00, 9.8237e-02, + 1DIAGNOSTIC, 10, -9.537964426786e-01, 2.876637413911e-03, 1.1470e+00, 9.8071e-02, + 1DIAGNOSTIC, 11, -9.550754667061e-01, 1.989036494595e-03, 1.2441e+00, 9.7082e-02, + 1DIAGNOSTIC, 12, -9.559786839564e-01, 1.403874653128e-03, 1.3416e+00, 9.7517e-02, + 1DIAGNOSTIC, 13, -9.565669354710e-01, 1.014564935221e-03, 1.4392e+00, 9.7539e-02, + 1DIAGNOSTIC, 14, -9.570135385337e-01, 7.437376081928e-04, 1.5337e+00, 9.4490e-02, + 1DIAGNOSTIC, 15, -9.574106109922e-01, 5.491294329970e-04, 1.6290e+00, 9.5323e-02, + 1DIAGNOSTIC, 16, -9.576719647268e-01, 3.991795795084e-04, 1.7261e+00, 9.7120e-02, + 1DIAGNOSTIC, 17, -9.578839570785e-01, 2.859201787258e-04, 1.8268e+00, 1.0067e-01, + 1DIAGNOSTIC, 18, -9.580512237068e-01, 2.021812332614e-04, 1.9316e+00, 1.0478e-01, + 1DIAGNOSTIC, 19, -9.582111193103e-01, 1.427708051647e-04, 2.0321e+00, 1.0054e-01, + 1DIAGNOSTIC, 20, -9.581661081400e-01, 9.955530506960e-05, 2.1284e+00, 9.6339e-02, + 1DIAGNOSTIC, 21, -9.581798861153e-01, 6.965487878456e-05, 2.2296e+00, 1.0119e-01, + 1DIAGNOSTIC, 22, -9.580538349214e-01, 4.660922019555e-05, 2.3271e+00, 9.7516e-02, + 1DIAGNOSTIC, 23, -9.581399147642e-01, 3.007905537323e-05, 2.4207e+00, 9.3611e-02, + 1DIAGNOSTIC, 24, -9.581116349985e-01, 1.732294719881e-05, 2.5198e+00, 9.9036e-02, + 1DIAGNOSTIC, 25, -9.580828632071e-01, 8.476190367653e-06, 2.6159e+00, 9.6082e-02, + 1DIAGNOSTIC, 26, -9.580877937721e-01, 2.712593797256e-06, 2.7129e+00, 9.7044e-02, + 1DIAGNOSTIC, 27, -9.581226830182e-01, -5.667254564246e-08, 2.8107e+00, 9.7823e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.116631153667e-01, 1.797693134862e+308, 3.6507e+00, 8.4000e-01, + 1DIAGNOSTIC, 2, -9.155549009932e-01, 1.797693134862e+308, 4.3129e+00, 6.6212e-01, + 1DIAGNOSTIC, 3, -9.190496611555e-01, 1.797693134862e+308, 4.9731e+00, 6.6020e-01, + 1DIAGNOSTIC, 4, -9.218713395526e-01, 1.797693134862e+308, 5.6472e+00, 6.7419e-01, + 1DIAGNOSTIC, 5, -9.242356185632e-01, 1.797693134862e+308, 6.3149e+00, 6.6764e-01, + 1DIAGNOSTIC, 6, -9.262884783945e-01, 1.797693134862e+308, 6.9844e+00, 6.6953e-01, + 1DIAGNOSTIC, 7, -9.280646560668e-01, 1.797693134862e+308, 7.6591e+00, 6.7467e-01, + 1DIAGNOSTIC, 8, -9.297266510450e-01, 1.797693134862e+308, 8.3321e+00, 6.7302e-01, + 1DIAGNOSTIC, 9, -9.313142126068e-01, 1.797693134862e+308, 8.9950e+00, 6.6287e-01, + 1DIAGNOSTIC, 10, -9.328633053545e-01, 1.408588157027e-03, 9.6618e+00, 6.6682e-01, + 1DIAGNOSTIC, 11, -9.343745653017e-01, 1.130635347358e-03, 1.0332e+01, 6.7029e-01, + 1DIAGNOSTIC, 12, -9.357466905441e-01, 9.311596814710e-04, 1.1005e+01, 6.7323e-01, + 1DIAGNOSTIC, 13, -9.370815880194e-01, 7.914571242996e-04, 1.1672e+01, 6.6633e-01, + 1DIAGNOSTIC, 14, -9.383486047904e-01, 6.886433246045e-04, 1.2345e+01, 6.7316e-01, + 1DIAGNOSTIC, 15, -9.395655273117e-01, 6.091785080109e-04, 1.3020e+01, 6.7495e-01, + 1DIAGNOSTIC, 16, -9.406656193261e-01, 5.436239625063e-04, 1.3689e+01, 6.6908e-01, + 1DIAGNOSTIC, 17, -9.416446714645e-01, 4.849562576956e-04, 1.4359e+01, 6.7008e-01, + 1DIAGNOSTIC, 18, -9.425240285316e-01, 4.308873820727e-04, 1.5024e+01, 6.6539e-01, + 1DIAGNOSTIC, 19, -9.432944433994e-01, 3.802169444869e-04, 1.5711e+01, 6.8668e-01, + 1DIAGNOSTIC, 20, -9.439627973828e-01, 3.328707767190e-04, 1.6385e+01, 6.7408e-01, + 1DIAGNOSTIC, 21, -9.445596444045e-01, 2.894753289163e-04, 1.7055e+01, 6.7030e-01, + 1DIAGNOSTIC, 22, -9.450891502636e-01, 2.492007275780e-04, 1.7725e+01, 6.6924e-01, + 1DIAGNOSTIC, 23, -9.455661121577e-01, 2.129884304906e-04, 1.8390e+01, 6.6509e-01, + 1DIAGNOSTIC, 24, -9.459827909784e-01, 1.810693806037e-04, 1.9061e+01, 6.7123e-01, + 1DIAGNOSTIC, 25, -9.463595387093e-01, 1.540137126269e-04, 1.9736e+01, 6.7504e-01, + 1DIAGNOSTIC, 26, -9.467019919330e-01, 1.313644891668e-04, 2.0407e+01, 6.7099e-01, + 1DIAGNOSTIC, 27, -9.470074231580e-01, 1.124279379499e-04, 2.1071e+01, 6.6404e-01, + 1DIAGNOSTIC, 28, -9.472837216755e-01, 9.674889485919e-05, 2.1735e+01, 6.6415e-01, + 1DIAGNOSTIC, 29, -9.475359393219e-01, 8.371382417494e-05, 2.2402e+01, 6.6639e-01, + 1DIAGNOSTIC, 30, -9.477686834298e-01, 7.275108195384e-05, 2.3072e+01, 6.7004e-01, + 1DIAGNOSTIC, 31, -9.479807295459e-01, 6.353579150933e-05, 2.3733e+01, 6.6141e-01, + 1DIAGNOSTIC, 32, -9.481780570110e-01, 5.578216117937e-05, 2.4400e+01, 6.6738e-01, + 1DIAGNOSTIC, 33, -9.483574000556e-01, 4.926467714344e-05, 2.5070e+01, 6.6933e-01, + 1DIAGNOSTIC, 34, -9.485218001443e-01, 4.366559393377e-05, 2.5734e+01, 6.6419e-01, + 1DIAGNOSTIC, 35, -9.486747551812e-01, 3.885814836258e-05, 2.6405e+01, 6.7073e-01, + 1DIAGNOSTIC, 36, -9.488158447691e-01, 3.473012989042e-05, 2.7078e+01, 6.7368e-01, + 1DIAGNOSTIC, 37, -9.489404970917e-01, 3.108230219645e-05, 2.7754e+01, 6.7539e-01, + 1DIAGNOSTIC, 38, -9.490574217644e-01, 2.784526005213e-05, 2.8422e+01, 6.6858e-01, + 1DIAGNOSTIC, 39, -9.491675224302e-01, 2.497910639834e-05, 2.9091e+01, 6.6843e-01, + 1DIAGNOSTIC, 40, -9.492796194726e-01, 2.253002527606e-05, 2.9760e+01, 6.6906e-01, + 1DIAGNOSTIC, 41, -9.493793171595e-01, 2.039663246517e-05, 3.0422e+01, 6.6220e-01, + 1DIAGNOSTIC, 42, -9.494627473777e-01, 1.848937225494e-05, 3.1086e+01, 6.6374e-01, + 1DIAGNOSTIC, 43, -9.495461680427e-01, 1.680586016381e-05, 3.1754e+01, 6.6818e-01, + 1DIAGNOSTIC, 44, -9.496217024148e-01, 1.529098300572e-05, 3.2419e+01, 6.6539e-01, + 1DIAGNOSTIC, 45, -9.496865848650e-01, 1.389315604384e-05, 3.3084e+01, 6.6480e-01, + 1DIAGNOSTIC, 46, -9.497501978139e-01, 1.262421311234e-05, 3.3745e+01, 6.6061e-01, + 1DIAGNOSTIC, 47, -9.498078353869e-01, 1.142589759109e-05, 3.4418e+01, 6.7320e-01, + 1DIAGNOSTIC, 48, -9.498567796337e-01, 1.027984679303e-05, 3.5086e+01, 6.6809e-01, + 1DIAGNOSTIC, 49, -9.499037868486e-01, 9.214772291492e-06, 3.5753e+01, 6.6702e-01, + 1DIAGNOSTIC, 50, -9.499379343352e-01, 8.243375403644e-06, 3.6422e+01, 6.6910e-01, + 1DIAGNOSTIC, 51, -9.499763493305e-01, 7.390996894337e-06, 3.7096e+01, 6.7378e-01, + 1DIAGNOSTIC, 52, -9.500134595593e-01, 6.612340808423e-06, 3.7775e+01, 6.7935e-01, + 1DIAGNOSTIC, 53, -9.500482064832e-01, 5.951414876932e-06, 3.8442e+01, 6.6687e-01, + 1DIAGNOSTIC, 54, -9.500762448769e-01, 5.373871112137e-06, 3.9113e+01, 6.7094e-01, + 1DIAGNOSTIC, 55, -9.500920607245e-01, 4.795447733928e-06, 3.9783e+01, 6.6978e-01, + 1DIAGNOSTIC, 56, -9.501133873553e-01, 4.286454716913e-06, 4.0450e+01, 6.6749e-01, + 1DIAGNOSTIC, 57, -9.501340151617e-01, 3.846498846573e-06, 4.1122e+01, 6.7149e-01, + 1DIAGNOSTIC, 58, -9.501527941176e-01, 3.451819097000e-06, 4.1793e+01, 6.7093e-01, + 1DIAGNOSTIC, 59, -9.501699593937e-01, 3.117063092556e-06, 4.2462e+01, 6.6962e-01, + 1DIAGNOSTIC, 60, -9.501837474477e-01, 2.784421041509e-06, 4.3142e+01, 6.7953e-01, + 1DIAGNOSTIC, 61, -9.501968726241e-01, 2.498076806235e-06, 4.3816e+01, 6.7369e-01, + 1DIAGNOSTIC, 62, -9.502090490662e-01, 2.266678029911e-06, 4.4478e+01, 6.6214e-01, + 1DIAGNOSTIC, 63, -9.502208983831e-01, 2.093755895639e-06, 4.5142e+01, 6.6463e-01, + 1DIAGNOSTIC, 64, -9.502197849147e-01, 1.899200170463e-06, 4.5810e+01, 6.6763e-01, + 1DIAGNOSTIC, 65, -9.502261982903e-01, 1.678840318698e-06, 4.6513e+01, 7.0329e-01, + 1DIAGNOSTIC, 66, -9.502309411511e-01, 1.468048475485e-06, 4.7201e+01, 6.8801e-01, + 1DIAGNOSTIC, 67, -9.502356148170e-01, 1.280447722518e-06, 4.7870e+01, 6.6851e-01, + 1DIAGNOSTIC, 68, -9.502388473470e-01, 1.117090286246e-06, 4.8549e+01, 6.7948e-01, + 1DIAGNOSTIC, 69, -9.502318985731e-01, 9.405856461232e-07, 4.9216e+01, 6.6654e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.917565878698e-01, 1.797693134862e+308, 5.4895e+01, 5.6795e+00, + 1DIAGNOSTIC, 2, -8.952874544693e-01, 1.797693134862e+308, 6.0321e+01, 5.4255e+00, + 1DIAGNOSTIC, 3, -8.992860656328e-01, 1.797693134862e+308, 6.5757e+01, 5.4358e+00, + 1DIAGNOSTIC, 4, -9.024367322379e-01, 1.797693134862e+308, 7.1173e+01, 5.4164e+00, + 1DIAGNOSTIC, 5, -9.052122437739e-01, 1.797693134862e+308, 7.6597e+01, 5.4241e+00, + 1DIAGNOSTIC, 6, -9.075591557493e-01, 1.797693134862e+308, 8.2010e+01, 5.4128e+00, + 1DIAGNOSTIC, 7, -9.095946532650e-01, 1.797693134862e+308, 8.7448e+01, 5.4377e+00, + 1DIAGNOSTIC, 8, -9.114030659877e-01, 1.797693134862e+308, 9.2893e+01, 5.4450e+00, + 1DIAGNOSTIC, 9, -9.130277422835e-01, 1.797693134862e+308, 9.8429e+01, 5.5367e+00, + 1DIAGNOSTIC, 10, -9.143644990200e-01, 1.584181041033e-03, 1.0384e+02, 5.4141e+00, + 1DIAGNOSTIC, 11, -9.154568393778e-01, 1.257895287576e-03, 1.0932e+02, 5.4748e+00, + 1DIAGNOSTIC, 12, -9.165797017909e-01, 9.937088676205e-04, 1.1477e+02, 5.4494e+00, + 1DIAGNOSTIC, 13, -9.175004068196e-01, 7.981517003170e-04, 1.2021e+02, 5.4430e+00, + 1DIAGNOSTIC, 14, -9.185006895953e-01, 6.501454437827e-04, 1.2562e+02, 5.4054e+00, + 1DIAGNOSTIC, 15, -9.193192191750e-01, 5.369068256265e-04, 1.3105e+02, 5.4379e+00, + 1DIAGNOSTIC, 16, -9.201128936106e-01, 4.495940182709e-04, 1.3661e+02, 5.5535e+00, + 1DIAGNOSTIC, 17, -9.208538960288e-01, 3.818343815235e-04, 1.4207e+02, 5.4664e+00, + 1DIAGNOSTIC, 18, -9.215338236328e-01, 3.291206389475e-04, 1.4768e+02, 5.6069e+00, + 1DIAGNOSTIC, 19, -9.221544072583e-01, 2.880737888543e-04, 1.5318e+02, 5.4953e+00, + 1DIAGNOSTIC, 20, -9.227189870427e-01, 2.538668590694e-04, 1.5862e+02, 5.4402e+00, + 1DIAGNOSTIC, 21, -9.232175092829e-01, 2.227286155015e-04, 1.6406e+02, 5.4398e+00, + 1DIAGNOSTIC, 22, -9.236119192248e-01, 1.950375422811e-04, 1.6957e+02, 5.5144e+00, + 1DIAGNOSTIC, 23, -9.239184734815e-01, 1.680222644218e-04, 1.7504e+02, 5.4739e+00, + 1DIAGNOSTIC, 24, -9.241527893927e-01, 1.434955210378e-04, 1.8048e+02, 5.4371e+00, + 1DIAGNOSTIC, 25, -9.243335150724e-01, 1.198666391525e-04, 1.8597e+02, 5.4892e+00, + 1DIAGNOSTIC, 26, -9.244727753037e-01, 9.792441116424e-05, 1.9141e+02, 5.4348e+00, + 1DIAGNOSTIC, 27, -9.245740018255e-01, 7.808524662497e-05, 1.9687e+02, 5.4681e+00, + 1DIAGNOSTIC, 28, -9.247794126129e-01, 6.214467283379e-05, 2.0231e+02, 5.4385e+00, + 1DIAGNOSTIC, 29, -9.247978294039e-01, 4.826483199914e-05, 2.0781e+02, 5.4981e+00, + 1DIAGNOSTIC, 30, -9.249232844938e-01, 3.794013247752e-05, 2.1328e+02, 5.4654e+00, + 1DIAGNOSTIC, 31, -9.248750633738e-01, 2.923083751548e-05, 2.1873e+02, 5.4532e+00, + 1DIAGNOSTIC, 32, -9.248169157056e-01, 2.162991313730e-05, 2.2436e+02, 5.6345e+00, + 1DIAGNOSTIC, 33, -9.247650479526e-01, 1.490084902150e-05, 2.2982e+02, 5.4566e+00, + 1DIAGNOSTIC, 34, -9.247188765853e-01, 8.932350534833e-06, 2.3527e+02, 5.4508e+00, + 1DIAGNOSTIC, 35, -9.246841160765e-01, 3.825723506740e-06, 2.4074e+02, 5.4671e+00, + 1DIAGNOSTIC, 36, -9.246621054571e-01, -2.627296858890e-07, 2.4619e+02, 5.4492e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.849639650955e-01, 1.797693134862e+308, 2.9114e+02, 4.4954e+01, + 1DIAGNOSTIC, 2, -8.867015881015e-01, 1.797693134862e+308, 3.3565e+02, 4.4512e+01, + 1DIAGNOSTIC, 3, -8.887346456768e-01, 1.797693134862e+308, 3.7983e+02, 4.4179e+01, + 1DIAGNOSTIC, 4, -8.908686237252e-01, 1.797693134862e+308, 4.2440e+02, 4.4569e+01, + 1DIAGNOSTIC, 5, -8.927009888352e-01, 1.797693134862e+308, 4.6872e+02, 4.4324e+01, + 1DIAGNOSTIC, 6, -8.942675977524e-01, 1.797693134862e+308, 5.1365e+02, 4.4922e+01, + 1DIAGNOSTIC, 7, -8.956293588275e-01, 1.797693134862e+308, 5.5868e+02, 4.5031e+01, + 1DIAGNOSTIC, 8, -8.968541358272e-01, 1.797693134862e+308, 6.0331e+02, 4.4631e+01, + 1DIAGNOSTIC, 9, -8.978645648930e-01, 1.797693134862e+308, 6.4822e+02, 4.4916e+01, + 1DIAGNOSTIC, 10, -8.987508928656e-01, 1.013054310208e-03, 6.9277e+02, 4.4544e+01, + 1DIAGNOSTIC, 11, -8.995306522811e-01, 8.316508227772e-04, 7.3728e+02, 4.4510e+01, + 1DIAGNOSTIC, 12, -9.001271474718e-01, 6.673854337574e-04, 7.8220e+02, 4.4925e+01, + 1DIAGNOSTIC, 13, -9.007397092228e-01, 5.323190398207e-04, 8.2702e+02, 4.4820e+01, + 1DIAGNOSTIC, 14, -9.011916008846e-01, 4.264444775985e-04, 8.7201e+02, 4.4992e+01, + 1DIAGNOSTIC, 15, -9.016054298646e-01, 3.430459917166e-04, 9.1729e+02, 4.5271e+01, + 1DIAGNOSTIC, 16, -9.019920000314e-01, 2.771610691978e-04, 9.6198e+02, 4.4693e+01, + 1DIAGNOSTIC, 17, -9.023484509982e-01, 2.253858471929e-04, 1.0063e+03, 4.4351e+01, + 1DIAGNOSTIC, 18, -9.026973391793e-01, 1.861443238493e-04, 1.0510e+03, 4.4654e+01, + 1DIAGNOSTIC, 19, -9.030186992948e-01, 1.559052311703e-04, 1.0955e+03, 4.4468e+01, + 1DIAGNOSTIC, 20, -9.033393225408e-01, 1.332686644179e-04, 1.1401e+03, 4.4635e+01, + Elapsed time (stage 2): 1140 + + +Total elapsed time: 1194 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:16 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:16 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:19 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:23 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:27 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30981 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:27 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:31 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:31 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31031 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:31 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:34 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:34 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31084 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:34 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31089 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:34 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:39 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:41 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:41 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:42 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:43 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:45 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:45 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:47 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:47 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC005 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:11 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC005 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:12 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC005 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:12 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31707 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:14 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:14 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31740 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:16 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:16 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC005_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 69.333 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/logs/proc_func_18-03-2024-32440.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:22 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC005 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/QC/sub-PNC005_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC005* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 69.383 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC005_ses-02 +========================reprocessing without filter=================== +sub-PNC005_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC005 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC005 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC005 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC005 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:26 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:26 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:35:36 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:37:46 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:38:01 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.00 (mm) at sub-brick 1 +++ Max delta displ in automask = 0.25 (mm) at sub-brick 2 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:51:05 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:51:17 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:53:37 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:55:51 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:58:11 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.497 -1.602 2.412 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.1 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.884 -2.185 3.349 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 74.0 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:03:07 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:03:35 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5621895d2a50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [105.102, 61.3677, -101.738] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562189449730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5621895e9350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5621895d9600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [72.8093, 111.5, -124.522] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5621895dbe40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562189de5f50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x562189de4270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [105.102, 61.3677, -101.738] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5621895d8640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56218a9101c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x562189de3a00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [72.8093, 111.5, -124.522] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5621895df390) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56218b10a300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.386505986081e-01, 1.797693134862e+308, 4.1591e-02, 4.1591e-02, + 2DIAGNOSTIC, 2, -6.404302399395e-01, 1.797693134862e+308, 4.3020e-02, 1.4291e-03, + 2DIAGNOSTIC, 3, -6.428957490250e-01, 1.797693134862e+308, 4.4301e-02, 1.2810e-03, + 2DIAGNOSTIC, 4, -6.437848697505e-01, 1.797693134862e+308, 4.5623e-02, 1.3220e-03, + 2DIAGNOSTIC, 5, -6.450741403023e-01, 1.797693134862e+308, 4.6874e-02, 1.2510e-03, + 2DIAGNOSTIC, 6, -6.470932953791e-01, 1.797693134862e+308, 4.8388e-02, 1.5140e-03, + 2DIAGNOSTIC, 7, -6.483426230505e-01, 1.797693134862e+308, 4.9913e-02, 1.5249e-03, + 2DIAGNOSTIC, 8, -6.496894050544e-01, 1.797693134862e+308, 5.1779e-02, 1.8659e-03, + 2DIAGNOSTIC, 9, -6.520740543051e-01, 1.797693134862e+308, 5.3074e-02, 1.2951e-03, + 2DIAGNOSTIC, 10, -6.522200967773e-01, 1.365782088476e-03, 5.4589e-02, 1.5152e-03, + 2DIAGNOSTIC, 11, -6.526638436083e-01, 1.144089705524e-03, 5.6155e-02, 1.5659e-03, + 2DIAGNOSTIC, 12, -6.544494797092e-01, 9.860360843408e-04, 5.8401e-02, 2.2459e-03, + 2DIAGNOSTIC, 13, -6.559368148116e-01, 8.951545434528e-04, 5.9894e-02, 1.4930e-03, + 2DIAGNOSTIC, 14, -6.564222309697e-01, 7.777564294380e-04, 6.1865e-02, 1.9710e-03, + 2DIAGNOSTIC, 15, -6.567708821974e-01, 6.532151951343e-04, 6.3373e-02, 1.5080e-03, + 2DIAGNOSTIC, 16, -6.572283373415e-01, 5.531275603600e-04, 6.4929e-02, 1.5562e-03, + 2DIAGNOSTIC, 17, -6.636909669643e-01, 6.110371428751e-04, 6.6704e-02, 1.7750e-03, + 2DIAGNOSTIC, 18, -6.676949517919e-01, 7.292047789326e-04, 6.9180e-02, 2.4760e-03, + 2DIAGNOSTIC, 19, -6.693587288087e-01, 8.597274520031e-04, 7.1027e-02, 1.8470e-03, + 2DIAGNOSTIC, 20, -6.807867384583e-01, 1.150849752352e-03, 7.3157e-02, 2.1300e-03, + 2DIAGNOSTIC, 21, -6.822401386456e-01, 1.339159939725e-03, 7.5033e-02, 1.8761e-03, + 2DIAGNOSTIC, 22, -6.824406128529e-01, 1.423428461365e-03, 7.6483e-02, 1.4501e-03, + 2DIAGNOSTIC, 23, -6.828554776349e-01, 1.404828467457e-03, 7.9049e-02, 2.5659e-03, + 2DIAGNOSTIC, 24, -6.829093186901e-01, 1.266706541100e-03, 8.0476e-02, 1.4272e-03, + 2DIAGNOSTIC, 25, -6.832726424270e-01, 1.032466874128e-03, 8.1891e-02, 1.4150e-03, + 2DIAGNOSTIC, 26, -6.834251152416e-01, 7.271086824912e-04, 8.3348e-02, 1.4570e-03, + 2DIAGNOSTIC, 27, -6.834426961743e-01, 4.812960937335e-04, 8.5297e-02, 1.9491e-03, + 2DIAGNOSTIC, 28, -6.834663470309e-01, 2.718568919156e-04, 8.6717e-02, 1.4200e-03, + 2DIAGNOSTIC, 29, -6.834863571259e-01, 7.210473851298e-05, 8.8194e-02, 1.4770e-03, + 2DIAGNOSTIC, 30, -6.835207584781e-01, 4.245675583442e-05, 9.0285e-02, 2.0902e-03, + 2DIAGNOSTIC, 31, -6.835652923649e-01, 3.148360899434e-05, 9.2383e-02, 2.0988e-03, + 2DIAGNOSTIC, 32, -6.835653683038e-01, 2.092327166509e-05, 9.3795e-02, 1.4119e-03, + 2DIAGNOSTIC, 33, -6.835659406161e-01, 1.458791365529e-05, 9.5250e-02, 1.4551e-03, + 2DIAGNOSTIC, 34, -6.835681482445e-01, 7.946608290871e-06, 9.6658e-02, 1.4079e-03, + 2DIAGNOSTIC, 35, -6.835738902327e-01, 5.471700044418e-06, 9.8074e-02, 1.4160e-03, + 2DIAGNOSTIC, 36, -6.835842383311e-01, 4.623185994090e-06, 9.9577e-02, 1.5030e-03, + 2DIAGNOSTIC, 37, -6.836015417895e-01, 3.866889410120e-06, 1.0102e-01, 1.4429e-03, + 2DIAGNOSTIC, 38, -6.836222594198e-01, 3.367098627582e-06, 1.0365e-01, 2.6319e-03, + 2DIAGNOSTIC, 39, -6.836236201195e-01, 2.879618989857e-06, 1.0515e-01, 1.5030e-03, + 2DIAGNOSTIC, 40, -6.836251916479e-01, 2.594681480231e-06, 1.0662e-01, 1.4689e-03, + 2DIAGNOSTIC, 41, -6.836305346869e-01, 2.671816321832e-06, 1.0813e-01, 1.5051e-03, + 2DIAGNOSTIC, 42, -6.836417359789e-01, 2.675686938326e-06, 1.0961e-01, 1.4842e-03, + 2DIAGNOSTIC, 43, -6.836727552467e-01, 2.804867365126e-06, 1.1532e-01, 5.7080e-03, + 2DIAGNOSTIC, 44, -6.836727551781e-01, 2.748403924325e-06, 1.1691e-01, 1.5850e-03, + 2DIAGNOSTIC, 45, -6.836727553288e-01, 2.563504579379e-06, 1.1882e-01, 1.9150e-03, + 2DIAGNOSTIC, 46, -6.836727555835e-01, 2.307249393908e-06, 1.2069e-01, 1.8730e-03, + 2DIAGNOSTIC, 47, -6.836727560137e-01, 2.056861650359e-06, 1.2250e-01, 1.8098e-03, + 2DIAGNOSTIC, 48, -6.836727567396e-01, 1.864628280820e-06, 1.2418e-01, 1.6770e-03, + 2DIAGNOSTIC, 49, -6.836727579630e-01, 1.578958987163e-06, 1.2565e-01, 1.4660e-03, + 2DIAGNOSTIC, 50, -6.836727600201e-01, 1.234418420194e-06, 1.2709e-01, 1.4460e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.580800788619e-01, 1.797693134862e+308, 1.7497e-01, 4.7876e-02, + 2DIAGNOSTIC, 2, -3.578652721330e-01, 1.797693134862e+308, 1.7769e-01, 2.7249e-03, + 2DIAGNOSTIC, 3, -3.593441423250e-01, 1.797693134862e+308, 1.8083e-01, 3.1321e-03, + 2DIAGNOSTIC, 4, -3.616460997386e-01, 1.797693134862e+308, 1.8351e-01, 2.6882e-03, + 2DIAGNOSTIC, 5, -3.654117766686e-01, 1.797693134862e+308, 1.8592e-01, 2.4068e-03, + 2DIAGNOSTIC, 6, -3.698937903396e-01, 1.797693134862e+308, 1.8828e-01, 2.3541e-03, + 2DIAGNOSTIC, 7, -3.729787001422e-01, 1.797693134862e+308, 1.9053e-01, 2.2521e-03, + 2DIAGNOSTIC, 8, -3.746623467106e-01, 1.797693134862e+308, 1.9288e-01, 2.3539e-03, + 2DIAGNOSTIC, 9, -3.787063013077e-01, 1.797693134862e+308, 1.9575e-01, 2.8720e-03, + 2DIAGNOSTIC, 10, -3.845171899351e-01, 4.743455175760e-03, 1.9874e-01, 2.9862e-03, + 2DIAGNOSTIC, 11, -4.144825847792e-01, 6.620815328386e-03, 2.0123e-01, 2.4860e-03, + 2DIAGNOSTIC, 12, -4.233232845769e-01, 8.045749179251e-03, 2.0373e-01, 2.5010e-03, + 2DIAGNOSTIC, 13, -4.586825478659e-01, 1.056077987472e-02, 2.0681e-01, 3.0870e-03, + 2DIAGNOSTIC, 14, -5.497718949344e-01, 1.628667622246e-02, 2.1014e-01, 3.3259e-03, + 2DIAGNOSTIC, 15, -5.975642222646e-01, 2.165951318949e-02, 2.1279e-01, 2.6512e-03, + 2DIAGNOSTIC, 16, -6.124996483118e-01, 2.490185535803e-02, 2.1566e-01, 2.8682e-03, + 2DIAGNOSTIC, 17, -6.158343803684e-01, 2.565941065786e-02, 2.1791e-01, 2.2531e-03, + 2DIAGNOSTIC, 18, -6.175153112617e-01, 2.411094214175e-02, 2.2108e-01, 3.1672e-03, + 2DIAGNOSTIC, 19, -6.183397828998e-01, 2.071334378129e-02, 2.2395e-01, 2.8691e-03, + 2DIAGNOSTIC, 20, -6.188331722164e-01, 1.603480397183e-02, 2.2622e-01, 2.2671e-03, + 2DIAGNOSTIC, 21, -6.189782605523e-01, 1.138219499350e-02, 2.2847e-01, 2.2521e-03, + 2DIAGNOSTIC, 22, -6.192324424489e-01, 6.501586201832e-03, 2.3077e-01, 2.2988e-03, + 2DIAGNOSTIC, 23, -6.194574724915e-01, 2.433585483028e-03, 2.3366e-01, 2.8949e-03, + 2DIAGNOSTIC, 24, -6.196303752217e-01, 7.627062618425e-04, 2.3652e-01, 2.8639e-03, + 2DIAGNOSTIC, 25, -6.196528443489e-01, 2.850410775597e-04, 2.3879e-01, 2.2619e-03, + 2DIAGNOSTIC, 26, -6.198107596358e-01, 1.572590404221e-04, 2.4161e-01, 2.8269e-03, + 2DIAGNOSTIC, 27, -6.198445421758e-01, 9.652306407525e-05, 2.4396e-01, 2.3489e-03, + 2DIAGNOSTIC, 28, -6.197826678572e-01, 6.430233791027e-05, 2.4621e-01, 2.2461e-03, + 2DIAGNOSTIC, 29, -6.199012649737e-01, 4.687243790039e-05, 2.4875e-01, 2.5439e-03, + 2DIAGNOSTIC, 30, -6.199082744267e-01, 3.575267013024e-05, 2.5100e-01, 2.2521e-03, + 2DIAGNOSTIC, 31, -6.200449275100e-01, 2.716952664019e-05, 2.5324e-01, 2.2380e-03, + 2DIAGNOSTIC, 32, -6.201231352062e-01, 2.234148656318e-05, 2.5698e-01, 3.7329e-03, + 2DIAGNOSTIC, 33, -6.200376232636e-01, 1.812689930634e-05, 2.5922e-01, 2.2411e-03, + 2DIAGNOSTIC, 34, -6.200426272929e-01, 1.551712412778e-05, 2.6148e-01, 2.2631e-03, + 2DIAGNOSTIC, 35, -6.200575593462e-01, 1.220007191947e-05, 2.6377e-01, 2.2879e-03, + 2DIAGNOSTIC, 36, -6.199904770504e-01, 9.332189219939e-06, 2.6595e-01, 2.1870e-03, + 2DIAGNOSTIC, 37, -6.200163092612e-01, 6.773337117183e-06, 2.6931e-01, 3.3572e-03, + 2DIAGNOSTIC, 38, -6.199967295956e-01, 2.668366864626e-06, 2.7169e-01, 2.3780e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.846305007616e-01, 1.797693134862e+308, 3.3424e-01, 6.2552e-02, + 2DIAGNOSTIC, 2, -4.850524392347e-01, 1.797693134862e+308, 3.4582e-01, 1.1582e-02, + 2DIAGNOSTIC, 3, -4.856958911265e-01, 1.797693134862e+308, 3.5763e-01, 1.1802e-02, + 2DIAGNOSTIC, 4, -4.870625947520e-01, 1.797693134862e+308, 3.6981e-01, 1.2182e-02, + 2DIAGNOSTIC, 5, -4.886490122537e-01, 1.797693134862e+308, 3.8231e-01, 1.2503e-02, + 2DIAGNOSTIC, 6, -4.896070161572e-01, 1.797693134862e+308, 3.9432e-01, 1.2005e-02, + 2DIAGNOSTIC, 7, -4.916936057089e-01, 1.797693134862e+308, 4.0778e-01, 1.3460e-02, + 2DIAGNOSTIC, 8, -4.918695192042e-01, 1.797693134862e+308, 4.2293e-01, 1.5159e-02, + 2DIAGNOSTIC, 9, -4.919176870725e-01, 1.797693134862e+308, 4.3875e-01, 1.5819e-02, + 2DIAGNOSTIC, 10, -4.920527808177e-01, 1.170355314312e-03, 4.5271e-01, 1.3960e-02, + 2DIAGNOSTIC, 11, -4.921093429507e-01, 9.467249125765e-04, 4.6491e-01, 1.2199e-02, + 2DIAGNOSTIC, 12, -4.921203421299e-01, 6.962290520195e-04, 4.7695e-01, 1.2042e-02, + 2DIAGNOSTIC, 13, -4.921345957140e-01, 4.506693821991e-04, 4.8908e-01, 1.2123e-02, + 2DIAGNOSTIC, 14, -4.921658773241e-01, 2.575575128313e-04, 5.0247e-01, 1.3392e-02, + 2DIAGNOSTIC, 15, -4.921970933463e-01, 1.294703941480e-04, 5.1572e-01, 1.3247e-02, + 2DIAGNOSTIC, 16, -4.921875748501e-01, 3.803998136957e-05, 5.2897e-01, 1.3249e-02, + 2DIAGNOSTIC, 17, -4.921979482992e-01, 2.555683040548e-05, 5.4061e-01, 1.1643e-02, + 2DIAGNOSTIC, 18, -4.922107911809e-01, 1.838559894569e-05, 5.5406e-01, 1.3448e-02, + 2DIAGNOSTIC, 19, -4.922293035041e-01, 1.234146467625e-05, 5.6918e-01, 1.5125e-02, + 2DIAGNOSTIC, 20, -4.922385271894e-01, 1.003444980394e-05, 5.8000e-01, 1.0819e-02, + 2DIAGNOSTIC, 21, -4.922514683185e-01, 9.094176675786e-06, 5.9066e-01, 1.0663e-02, + 2DIAGNOSTIC, 22, -4.923204890650e-01, 9.648039676360e-06, 6.0573e-01, 1.5066e-02, + 2DIAGNOSTIC, 23, -4.923924484883e-01, 1.149026361942e-05, 6.2093e-01, 1.5197e-02, + 2DIAGNOSTIC, 24, -4.923990545282e-01, 1.309138099644e-05, 6.3399e-01, 1.3066e-02, + 2DIAGNOSTIC, 25, -4.923991075555e-01, 1.423334959125e-05, 6.4578e-01, 1.1787e-02, + 2DIAGNOSTIC, 26, -4.923991431727e-01, 1.387753679933e-05, 6.5664e-01, 1.0856e-02, + 2DIAGNOSTIC, 27, -4.924022567133e-01, 1.261646171163e-05, 6.6713e-01, 1.0496e-02, + 2DIAGNOSTIC, 28, -4.924021900035e-01, 1.059427229440e-05, 6.7774e-01, 1.0606e-02, + 2DIAGNOSTIC, 29, -4.924047087439e-01, 8.252226764829e-06, 6.8922e-01, 1.1481e-02, + 2DIAGNOSTIC, 30, -4.923979578497e-01, 5.468810941926e-06, 7.0002e-01, 1.0797e-02, + 2DIAGNOSTIC, 31, -4.924057524359e-01, 2.820625377958e-06, 7.0998e-01, 9.9602e-03, + 2DIAGNOSTIC, 32, -4.924228386051e-01, 1.683901075585e-06, 7.2222e-01, 1.2244e-02, + 2DIAGNOSTIC, 33, -4.924195702461e-01, 1.742825077894e-06, 7.3213e-01, 9.9099e-03, + 2DIAGNOSTIC, 34, -4.924224644725e-01, 1.894010439454e-06, 7.4331e-01, 1.1184e-02, + 2DIAGNOSTIC, 35, -4.924296883430e-01, 2.070354310633e-06, 7.5570e-01, 1.2388e-02, + 2DIAGNOSTIC, 36, -4.924233560058e-01, 2.018315991767e-06, 7.6585e-01, 1.0150e-02, + 2DIAGNOSTIC, 37, -4.924211310523e-01, 1.874130521017e-06, 7.8030e-01, 1.4446e-02, + 2DIAGNOSTIC, 38, -4.924237184377e-01, 1.680371960650e-06, 7.9062e-01, 1.0325e-02, + 2DIAGNOSTIC, 39, -4.924233119914e-01, 1.452122500366e-06, 8.0380e-01, 1.3182e-02, + 2DIAGNOSTIC, 40, -4.924242291889e-01, 1.087921631230e-06, 8.1652e-01, 1.2719e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.197812427841e-01, 1.797693134862e+308, 1.0259e+00, 2.0933e-01, + Elapsed time (stage 0): 1.0509e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.443089223476e-01, 1.797693134862e+308, 4.1825e-02, 4.1825e-02, + 2DIAGNOSTIC, 2, -9.469084822818e-01, 1.797693134862e+308, 4.3268e-02, 1.4431e-03, + 2DIAGNOSTIC, 3, -9.509665644635e-01, 1.797693134862e+308, 4.4777e-02, 1.5090e-03, + 2DIAGNOSTIC, 4, -9.570413647419e-01, 1.797693134862e+308, 4.6282e-02, 1.5051e-03, + 2DIAGNOSTIC, 5, -9.635764979685e-01, 1.797693134862e+308, 4.7790e-02, 1.5080e-03, + 2DIAGNOSTIC, 6, -9.891488723308e-01, 1.797693134862e+308, 4.9574e-02, 1.7841e-03, + 2DIAGNOSTIC, 7, -1.014109944328e+00, 1.797693134862e+308, 5.1371e-02, 1.7970e-03, + 2DIAGNOSTIC, 8, -1.026438169448e+00, 1.797693134862e+308, 5.3138e-02, 1.7669e-03, + 2DIAGNOSTIC, 9, -1.036295823520e+00, 1.797693134862e+308, 5.5576e-02, 2.4381e-03, + 2DIAGNOSTIC, 10, -1.036388469922e+00, 7.321526238695e-03, 5.7639e-02, 2.0630e-03, + 2DIAGNOSTIC, 11, -1.036742335417e+00, 6.613567589186e-03, 5.9390e-02, 1.7509e-03, + 2DIAGNOSTIC, 12, -1.037012348074e+00, 5.497997741961e-03, 6.1167e-02, 1.7769e-03, + 2DIAGNOSTIC, 13, -1.037826685554e+00, 4.172212843820e-03, 6.2917e-02, 1.7500e-03, + 2DIAGNOSTIC, 14, -1.038727709165e+00, 2.812517860249e-03, 6.4949e-02, 2.0318e-03, + 2DIAGNOSTIC, 15, -1.038592439595e+00, 1.500044746300e-03, 6.6739e-02, 1.7900e-03, + 2DIAGNOSTIC, 16, -1.040064589510e+00, 6.906757884985e-04, 6.9561e-02, 2.8219e-03, + 2DIAGNOSTIC, 17, -1.041210957024e+00, 3.448267457755e-04, 7.2152e-02, 2.5909e-03, + 2DIAGNOSTIC, 18, -1.040374841201e+00, 1.818152958646e-04, 7.5509e-02, 3.3569e-03, + 2DIAGNOSTIC, 19, -1.040375776507e+00, 1.663518571743e-04, 7.7366e-02, 1.8570e-03, + 2DIAGNOSTIC, 20, -1.040386219881e+00, 1.387637142499e-04, 7.9138e-02, 1.7719e-03, + 2DIAGNOSTIC, 21, -1.040403346835e+00, 1.057197202649e-04, 8.0907e-02, 1.7691e-03, + 2DIAGNOSTIC, 22, -1.040430571157e+00, 6.935353713127e-05, 8.2717e-02, 1.8098e-03, + 2DIAGNOSTIC, 23, -1.040470534122e+00, 4.033877521094e-05, 8.4692e-02, 1.9751e-03, + 2DIAGNOSTIC, 24, -1.040526714933e+00, 2.179182707229e-05, 8.6736e-02, 2.0440e-03, + 2DIAGNOSTIC, 25, -1.040599277069e+00, 1.663962450223e-06, 8.8810e-02, 2.0740e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.671164602291e-01, 1.797693134862e+308, 1.3194e-01, 4.3128e-02, + 2DIAGNOSTIC, 2, -6.671093222591e-01, 1.797693134862e+308, 1.3442e-01, 2.4850e-03, + 2DIAGNOSTIC, 3, -6.686321170461e-01, 1.797693134862e+308, 1.3693e-01, 2.5048e-03, + 2DIAGNOSTIC, 4, -6.712465811087e-01, 1.797693134862e+308, 1.3946e-01, 2.5342e-03, + 2DIAGNOSTIC, 5, -6.763365094211e-01, 1.797693134862e+308, 1.4166e-01, 2.1992e-03, + 2DIAGNOSTIC, 6, -6.829104066936e-01, 1.797693134862e+308, 1.4371e-01, 2.0530e-03, + 2DIAGNOSTIC, 7, -7.085652321793e-01, 1.797693134862e+308, 1.4629e-01, 2.5749e-03, + 2DIAGNOSTIC, 8, -7.203830071001e-01, 1.797693134862e+308, 1.4889e-01, 2.5980e-03, + 2DIAGNOSTIC, 9, -7.243903605057e-01, 1.797693134862e+308, 1.5159e-01, 2.7020e-03, + 2DIAGNOSTIC, 10, -7.275767868704e-01, 6.799636809356e-03, 1.5386e-01, 2.2681e-03, + 2DIAGNOSTIC, 11, -7.307260160226e-01, 6.591470280028e-03, 1.5651e-01, 2.6560e-03, + 2DIAGNOSTIC, 12, -7.321690914034e-01, 5.864949324029e-03, 1.5885e-01, 2.3351e-03, + 2DIAGNOSTIC, 13, -7.336918097601e-01, 4.816845958575e-03, 1.6147e-01, 2.6171e-03, + 2DIAGNOSTIC, 14, -7.349489131070e-01, 3.607762886832e-03, 1.6471e-01, 3.2439e-03, + 2DIAGNOSTIC, 15, -7.348441677138e-01, 2.378827485838e-03, 1.6736e-01, 2.6550e-03, + 2DIAGNOSTIC, 16, -7.355266065150e-01, 1.260364626021e-03, 1.7004e-01, 2.6710e-03, + 2DIAGNOSTIC, 17, -7.358344027121e-01, 7.684776472801e-04, 1.7237e-01, 2.3339e-03, + 2DIAGNOSTIC, 18, -7.359970488605e-01, 5.273865313368e-04, 1.7498e-01, 2.6109e-03, + 2DIAGNOSTIC, 19, -7.362056140375e-01, 3.515482974975e-04, 1.7784e-01, 2.8598e-03, + 2DIAGNOSTIC, 20, -7.362664742291e-01, 2.250837763371e-04, 1.8022e-01, 2.3849e-03, + 2DIAGNOSTIC, 21, -7.363628442632e-01, 1.515461514528e-04, 1.8339e-01, 3.1641e-03, + 2DIAGNOSTIC, 22, -7.368470509319e-01, 1.050472358489e-04, 1.8650e-01, 3.1140e-03, + 2DIAGNOSTIC, 23, -7.387372824966e-01, 1.111765392403e-04, 1.9023e-01, 3.7279e-03, + 2DIAGNOSTIC, 24, -7.391929170016e-01, 1.342098992298e-04, 1.9294e-01, 2.7130e-03, + 2DIAGNOSTIC, 25, -7.393609442765e-01, 1.439230759154e-04, 1.9577e-01, 2.8229e-03, + 2DIAGNOSTIC, 26, -7.396596245630e-01, 1.547565407880e-04, 1.9925e-01, 3.4850e-03, + 2DIAGNOSTIC, 27, -7.396652015807e-01, 1.546734460332e-04, 2.0236e-01, 3.1049e-03, + 2DIAGNOSTIC, 28, -7.397421599895e-01, 1.430477670327e-04, 2.0534e-01, 2.9881e-03, + 2DIAGNOSTIC, 29, -7.397559892374e-01, 1.218071638127e-04, 2.0793e-01, 2.5871e-03, + 2DIAGNOSTIC, 30, -7.398526549885e-01, 9.306326573834e-05, 2.1052e-01, 2.5899e-03, + 2DIAGNOSTIC, 31, -7.399942582634e-01, 6.065809771653e-05, 2.1335e-01, 2.8269e-03, + 2DIAGNOSTIC, 32, -7.400490296100e-01, 3.068903762337e-05, 2.1617e-01, 2.8210e-03, + 2DIAGNOSTIC, 33, -7.400681446924e-01, 2.243061538325e-05, 2.1895e-01, 2.7781e-03, + 2DIAGNOSTIC, 34, -7.400081857558e-01, 1.720867403484e-05, 2.2143e-01, 2.4798e-03, + 2DIAGNOSTIC, 35, -7.400161807249e-01, 1.264754133853e-05, 2.2388e-01, 2.4481e-03, + 2DIAGNOSTIC, 36, -7.400894698594e-01, 1.125501758742e-05, 2.2631e-01, 2.4331e-03, + 2DIAGNOSTIC, 37, -7.401538087870e-01, 9.642533070280e-06, 2.2908e-01, 2.7702e-03, + 2DIAGNOSTIC, 38, -7.402980148896e-01, 9.582167704147e-06, 2.3184e-01, 2.7621e-03, + 2DIAGNOSTIC, 39, -7.401171574064e-01, 7.002638898326e-06, 2.3460e-01, 2.7559e-03, + 2DIAGNOSTIC, 40, -7.402657003299e-01, 6.410976867197e-06, 2.3735e-01, 2.7518e-03, + 2DIAGNOSTIC, 41, -7.403491168590e-01, 7.385799847055e-06, 2.4015e-01, 2.8000e-03, + 2DIAGNOSTIC, 42, -7.403598990811e-01, 8.232744274819e-06, 2.4262e-01, 2.4748e-03, + 2DIAGNOSTIC, 43, -7.403298502056e-01, 8.265266982183e-06, 2.4509e-01, 2.4691e-03, + 2DIAGNOSTIC, 44, -7.403672949369e-01, 7.431835320065e-06, 2.4785e-01, 2.7580e-03, + 2DIAGNOSTIC, 45, -7.405015791910e-01, 7.209887233073e-06, 2.5025e-01, 2.4040e-03, + 2DIAGNOSTIC, 46, -7.418905340045e-01, 1.870781019194e-05, 2.5334e-01, 3.0890e-03, + 2DIAGNOSTIC, 47, -7.422928278271e-01, 3.151097958993e-05, 2.5609e-01, 2.7490e-03, + 2DIAGNOSTIC, 48, -7.424287289204e-01, 4.322619837011e-05, 2.5855e-01, 2.4531e-03, + 2DIAGNOSTIC, 49, -7.429536702743e-01, 5.327052809027e-05, 2.6145e-01, 2.9042e-03, + 2DIAGNOSTIC, 50, -7.440392921424e-01, 6.734703272096e-05, 2.6651e-01, 5.0600e-03, + 2DIAGNOSTIC, 51, -7.444057274881e-01, 7.753525470196e-05, 2.6969e-01, 3.1841e-03, + 2DIAGNOSTIC, 52, -7.453348184871e-01, 8.700083881183e-05, 2.7207e-01, 2.3770e-03, + 2DIAGNOSTIC, 53, -7.459739523807e-01, 9.238192801641e-05, 2.7449e-01, 2.4240e-03, + 2DIAGNOSTIC, 54, -7.463879657408e-01, 9.203955373115e-05, 2.7694e-01, 2.4438e-03, + 2DIAGNOSTIC, 55, -7.469033859843e-01, 8.721753072951e-05, 2.8027e-01, 3.3269e-03, + 2DIAGNOSTIC, 56, -7.471880182430e-01, 8.576934131946e-05, 2.8265e-01, 2.3892e-03, + 2DIAGNOSTIC, 57, -7.475293644310e-01, 8.129596588123e-05, 2.8506e-01, 2.4068e-03, + 2DIAGNOSTIC, 58, -7.484038610901e-01, 7.592271522203e-05, 2.8776e-01, 2.6999e-03, + 2DIAGNOSTIC, 59, -7.493328982016e-01, 7.280098234486e-05, 2.9044e-01, 2.6801e-03, + 2DIAGNOSTIC, 60, -7.499420600202e-01, 7.373175345262e-05, 2.9281e-01, 2.3670e-03, + 2DIAGNOSTIC, 61, -7.509854924743e-01, 7.647947621415e-05, 2.9606e-01, 3.2530e-03, + 2DIAGNOSTIC, 62, -7.512677765838e-01, 7.926652789478e-05, 2.9873e-01, 2.6681e-03, + 2DIAGNOSTIC, 63, -7.516169664651e-01, 8.042880444441e-05, 3.0142e-01, 2.6948e-03, + 2DIAGNOSTIC, 64, -7.518747727058e-01, 7.782881117964e-05, 3.0407e-01, 2.6429e-03, + 2DIAGNOSTIC, 65, -7.521616721538e-01, 7.261136629174e-05, 3.0755e-01, 3.4850e-03, + 2DIAGNOSTIC, 66, -7.522660508505e-01, 6.286778227969e-05, 3.1069e-01, 3.1412e-03, + 2DIAGNOSTIC, 67, -7.523149181416e-01, 4.961482005345e-05, 3.1384e-01, 3.1459e-03, + 2DIAGNOSTIC, 68, -7.523094459965e-01, 3.694010058768e-05, 3.1692e-01, 3.0830e-03, + 2DIAGNOSTIC, 69, -7.522557891397e-01, 2.600901526473e-05, 3.1972e-01, 2.7969e-03, + 2DIAGNOSTIC, 70, -7.522328568420e-01, 1.603728312082e-05, 3.2216e-01, 2.4421e-03, + 2DIAGNOSTIC, 71, -7.522154374051e-01, 1.042179648810e-05, 3.2463e-01, 2.4669e-03, + 2DIAGNOSTIC, 72, -7.522386986076e-01, 5.622881226391e-06, 3.2737e-01, 2.7392e-03, + 2DIAGNOSTIC, 73, -7.522650038434e-01, 2.428642791057e-06, 3.2980e-01, 2.4309e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.685668184698e-01, 1.797693134862e+308, 3.9380e-01, 6.3999e-02, + 2DIAGNOSTIC, 2, -5.692558711188e-01, 1.797693134862e+308, 4.0613e-01, 1.2330e-02, + 2DIAGNOSTIC, 3, -5.703407586455e-01, 1.797693134862e+308, 4.1765e-01, 1.1520e-02, + 2DIAGNOSTIC, 4, -5.720466682472e-01, 1.797693134862e+308, 4.2912e-01, 1.1470e-02, + 2DIAGNOSTIC, 5, -5.734480984928e-01, 1.797693134862e+308, 4.4032e-01, 1.1207e-02, + 2DIAGNOSTIC, 6, -5.745113069332e-01, 1.797693134862e+308, 4.5175e-01, 1.1424e-02, + 2DIAGNOSTIC, 7, -5.757160578551e-01, 1.797693134862e+308, 4.6332e-01, 1.1570e-02, + 2DIAGNOSTIC, 8, -5.779833691572e-01, 1.797693134862e+308, 4.7930e-01, 1.5985e-02, + 2DIAGNOSTIC, 9, -5.786842080603e-01, 1.797693134862e+308, 4.9430e-01, 1.5002e-02, + 2DIAGNOSTIC, 10, -5.789463320222e-01, 1.284271866139e-03, 5.0651e-01, 1.2206e-02, + 2DIAGNOSTIC, 11, -5.802804493921e-01, 1.150523985914e-03, 5.1876e-01, 1.2249e-02, + 2DIAGNOSTIC, 12, -5.821039215443e-01, 1.037853795391e-03, 5.3159e-01, 1.2833e-02, + 2DIAGNOSTIC, 13, -5.838285981478e-01, 9.523133785716e-04, 5.4411e-01, 1.2521e-02, + 2DIAGNOSTIC, 14, -5.852801437258e-01, 9.027840891248e-04, 5.5583e-01, 1.1714e-02, + 2DIAGNOSTIC, 15, -5.863782540090e-01, 8.603715444521e-04, 5.6737e-01, 1.1545e-02, + 2DIAGNOSTIC, 16, -5.880399713918e-01, 8.279807197203e-04, 5.8323e-01, 1.5858e-02, + 2DIAGNOSTIC, 17, -5.899847532440e-01, 8.113290039873e-04, 5.9770e-01, 1.4474e-02, + 2DIAGNOSTIC, 18, -5.912009701593e-01, 8.152574625071e-04, 6.1049e-01, 1.2783e-02, + 2DIAGNOSTIC, 19, -5.917887594152e-01, 7.771524874804e-04, 6.2347e-01, 1.2985e-02, + 2DIAGNOSTIC, 20, -5.919578140296e-01, 6.817656586803e-04, 6.3720e-01, 1.3731e-02, + 2DIAGNOSTIC, 21, -5.921147098614e-01, 5.664652145609e-04, 6.4852e-01, 1.1317e-02, + 2DIAGNOSTIC, 22, -5.923289185484e-01, 4.532689852059e-04, 6.6138e-01, 1.2856e-02, + 2DIAGNOSTIC, 23, -5.925270747768e-01, 3.479727439387e-04, 6.7297e-01, 1.1594e-02, + 2DIAGNOSTIC, 24, -5.935689471950e-01, 2.699037472720e-04, 6.8597e-01, 1.2997e-02, + 2DIAGNOSTIC, 25, -5.940374382581e-01, 2.028757287104e-04, 6.9937e-01, 1.3407e-02, + 2DIAGNOSTIC, 26, -5.942611886405e-01, 1.568536213451e-04, 7.1212e-01, 1.2741e-02, + 2DIAGNOSTIC, 27, -5.945033105517e-01, 1.388332487448e-04, 7.2478e-01, 1.2668e-02, + 2DIAGNOSTIC, 28, -5.949228643401e-01, 1.372715356912e-04, 7.3879e-01, 1.4011e-02, + 2DIAGNOSTIC, 29, -5.950816738332e-01, 1.350684143845e-04, 7.5539e-01, 1.6592e-02, + 2DIAGNOSTIC, 30, -5.951429230920e-01, 1.239742716720e-04, 7.6716e-01, 1.1773e-02, + 2DIAGNOSTIC, 31, -5.952220696933e-01, 1.058940852886e-04, 7.7869e-01, 1.1526e-02, + 2DIAGNOSTIC, 32, -5.952935331698e-01, 8.350223262570e-05, 7.9007e-01, 1.1387e-02, + 2DIAGNOSTIC, 33, -5.954015250981e-01, 5.873844598273e-05, 8.0245e-01, 1.2382e-02, + 2DIAGNOSTIC, 34, -5.954676352661e-01, 4.559916969150e-05, 8.1565e-01, 1.3198e-02, + 2DIAGNOSTIC, 35, -5.956461240244e-01, 3.796721845712e-05, 8.3184e-01, 1.6189e-02, + 2DIAGNOSTIC, 36, -5.957371147534e-01, 3.142989309003e-05, 8.4636e-01, 1.4515e-02, + 2DIAGNOSTIC, 37, -5.957448873236e-01, 2.548072535848e-05, 8.5786e-01, 1.1500e-02, + 2DIAGNOSTIC, 38, -5.957572719965e-01, 2.299441725068e-05, 8.6947e-01, 1.1610e-02, + 2DIAGNOSTIC, 39, -5.957753647495e-01, 2.071473226825e-05, 8.8151e-01, 1.2039e-02, + 2DIAGNOSTIC, 40, -5.958066248616e-01, 1.773097659569e-05, 8.9489e-01, 1.3380e-02, + 2DIAGNOSTIC, 41, -5.958549849562e-01, 1.475573485950e-05, 9.0682e-01, 1.1938e-02, + 2DIAGNOSTIC, 42, -5.959211903327e-01, 1.216773031936e-05, 9.2616e-01, 1.9334e-02, + 2DIAGNOSTIC, 43, -5.959495811468e-01, 1.015245409120e-05, 9.3869e-01, 1.2532e-02, + 2DIAGNOSTIC, 44, -5.959759876371e-01, 8.307610596642e-06, 9.5033e-01, 1.1635e-02, + 2DIAGNOSTIC, 45, -5.960173583966e-01, 8.154793257859e-06, 9.6206e-01, 1.1740e-02, + 2DIAGNOSTIC, 46, -5.961240368111e-01, 9.357227637528e-06, 9.7588e-01, 1.3812e-02, + 2DIAGNOSTIC, 47, -5.961667738400e-01, 1.016556130873e-05, 9.9471e-01, 1.8831e-02, + 2DIAGNOSTIC, 48, -5.962035369113e-01, 1.053164631657e-05, 1.0070e+00, 1.2334e-02, + 2DIAGNOSTIC, 49, -5.962149297690e-01, 1.024066424362e-05, 1.0198e+00, 1.2763e-02, + 2DIAGNOSTIC, 50, -5.962521151346e-01, 9.698230141509e-06, 1.0323e+00, 1.2482e-02, + 2DIAGNOSTIC, 51, -5.963185511441e-01, 9.360734771955e-06, 1.0504e+00, 1.8142e-02, + 2DIAGNOSTIC, 52, -5.963386515746e-01, 8.977377315630e-06, 1.0637e+00, 1.3234e-02, + 2DIAGNOSTIC, 53, -5.963824673640e-01, 8.476765795327e-06, 1.0763e+00, 1.2644e-02, + 2DIAGNOSTIC, 54, -5.964251402102e-01, 7.859461398259e-06, 1.0902e+00, 1.3876e-02, + 2DIAGNOSTIC, 55, -5.964454338195e-01, 7.079220771734e-06, 1.1027e+00, 1.2521e-02, + 2DIAGNOSTIC, 56, -5.964573659307e-01, 6.712467527044e-06, 1.1152e+00, 1.2482e-02, + 2DIAGNOSTIC, 57, -5.964703303574e-01, 6.235600433210e-06, 1.1295e+00, 1.4342e-02, + 2DIAGNOSTIC, 58, -5.964845458123e-01, 5.656199030282e-06, 1.1487e+00, 1.9188e-02, + 2DIAGNOSTIC, 59, -5.964861298024e-01, 4.704226127632e-06, 1.1632e+00, 1.4514e-02, + 2DIAGNOSTIC, 60, -5.964888645378e-01, 3.695228243224e-06, 1.1761e+00, 1.2886e-02, + 2DIAGNOSTIC, 61, -5.964903233182e-01, 2.955213879229e-06, 1.1891e+00, 1.2961e-02, + 2DIAGNOSTIC, 62, -5.964951818146e-01, 2.193800294523e-06, 1.2016e+00, 1.2558e-02, + 2DIAGNOSTIC, 63, -5.965014754707e-01, 1.669325182040e-06, 1.2137e+00, 1.2054e-02, + 2DIAGNOSTIC, 64, -5.965067593053e-01, 1.407073909263e-06, 1.2257e+00, 1.1991e-02, + 2DIAGNOSTIC, 65, -5.965123194800e-01, 1.257022469888e-06, 1.2385e+00, 1.2771e-02, + 2DIAGNOSTIC, 66, -5.965252465831e-01, 1.217572784148e-06, 1.2510e+00, 1.2513e-02, + 2DIAGNOSTIC, 67, -5.965539291410e-01, 1.402904165088e-06, 1.2726e+00, 2.1612e-02, + 2DIAGNOSTIC, 68, -5.965573888698e-01, 1.613673769302e-06, 1.2872e+00, 1.4619e-02, + 2DIAGNOSTIC, 69, -5.965578461083e-01, 1.724842313521e-06, 1.2998e+00, 1.2653e-02, + 2DIAGNOSTIC, 70, -5.965590837498e-01, 1.741747116871e-06, 1.3124e+00, 1.2563e-02, + 2DIAGNOSTIC, 71, -5.965637316016e-01, 1.673740962514e-06, 1.3261e+00, 1.3652e-02, + 2DIAGNOSTIC, 72, -5.965645677403e-01, 1.523252314700e-06, 1.3393e+00, 1.3282e-02, + 2DIAGNOSTIC, 73, -5.965647091490e-01, 1.315386523227e-06, 1.3801e+00, 4.0795e-02, + 2DIAGNOSTIC, 74, -5.965647091389e-01, 1.066351559463e-06, 1.4206e+00, 4.0490e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.025363823093e-01, 1.797693134862e+308, 1.6168e+00, 1.9612e-01, + Elapsed time (stage 1): 1.6425e+00 + + +Total elapsed time: 2.6948e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:03:39 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 40 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 102 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 88.02% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 88.02% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[18134 3458 208 193 427 1290 8550 783 898 0 0 956 + 0 417 0 213 334 1063 486 783 726 247 0 379 + 240 0 0 0 0 0 0 0 0 0 216 0 + 0 0 0 0] +[150222 86742 23982 28823 29496 21822 19861 13966 13170 12101 + 13967 12178 13432 11075 12572 4758 10601 3712 2789 3141 + 987 2371 1917 1948 1089 1689 1669 2991 1059 1073 + 953 1547 890 490 524 744 1222 1137 401 0] +[ 0 8489 0 0 0 0 12512 451 0 5135 0 0 + 0 5676 1857 441 0 295 0 0 0 7321 0 0 + 9992 469 0 218 0 10259 6329 0 0 0 0 0 + 0 0 8828 0] +[ 1957 453 7113 6114 1332 2222 455 16651 6089 280 + 1078 5224 2239 894 1873 7536 1592 26488 6399 18246 + 5761 205 6412 2532 108458 2989 1263 2118 11611 143480 + 3399 2688 7792 3037 3484 3004 1794 2334 211 1746] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:12:58 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:13:05 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:16:55 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:16:55 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:16:56 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:17:06 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:17:10 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC005 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:17:23 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:17:49 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:19:39 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:19:41 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:21:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:21:00 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55a666d2cd20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [73.2585, 111.949, -124.971] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a666ba3730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5f74d50010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55a666d30020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 61.8168, -102.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a666d360c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5f71691010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55a666d46840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [73.2585, 111.949, -124.971] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a666d32890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5f6c9bd010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55a666d4a3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 61.8168, -102.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a666d39130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5f692fe010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.056814858544e-01, 1.797693134862e+308, 2.3542e-01, 2.3542e-01, + 2DIAGNOSTIC, 2, -4.078409339347e-01, 1.797693134862e+308, 2.3698e-01, 1.5559e-03, + 2DIAGNOSTIC, 3, -4.107351280814e-01, 1.797693134862e+308, 2.3847e-01, 1.4911e-03, + 2DIAGNOSTIC, 4, -4.144113459882e-01, 1.797693134862e+308, 2.3995e-01, 1.4770e-03, + 2DIAGNOSTIC, 5, -4.170352247775e-01, 1.797693134862e+308, 2.4140e-01, 1.4482e-03, + 2DIAGNOSTIC, 6, -4.219020304016e-01, 1.797693134862e+308, 2.4288e-01, 1.4861e-03, + 2DIAGNOSTIC, 7, -4.295545232552e-01, 1.797693134862e+308, 2.4438e-01, 1.4989e-03, + 2DIAGNOSTIC, 8, -4.515560452985e-01, 1.797693134862e+308, 2.4600e-01, 1.6191e-03, + 2DIAGNOSTIC, 9, -5.387124649063e-01, 1.797693134862e+308, 2.4807e-01, 2.0690e-03, + 2DIAGNOSTIC, 10, -5.448685231140e-01, 1.855965521937e-02, 2.5003e-01, 1.9650e-03, + 2DIAGNOSTIC, 11, -5.578362604654e-01, 2.113826803755e-02, 2.5250e-01, 2.4688e-03, + 2DIAGNOSTIC, 12, -5.587304803759e-01, 2.153803316053e-02, 2.5441e-01, 1.9109e-03, + 2DIAGNOSTIC, 13, -5.592461776209e-01, 2.008459877941e-02, 2.5608e-01, 1.6670e-03, + 2DIAGNOSTIC, 14, -5.601263691358e-01, 1.721287245970e-02, 2.5772e-01, 1.6372e-03, + 2DIAGNOSTIC, 15, -5.570876241394e-01, 1.321489877536e-02, 2.5961e-01, 1.8909e-03, + 2DIAGNOSTIC, 16, -5.595390758061e-01, 8.901131872327e-03, 2.6175e-01, 2.1441e-03, + 2DIAGNOSTIC, 17, -5.597051701386e-01, 4.631264266873e-03, 2.6364e-01, 1.8830e-03, + 2DIAGNOSTIC, 18, -5.562481275091e-01, 9.929864356234e-04, 2.6552e-01, 1.8799e-03, + 2DIAGNOSTIC, 19, -5.576645899416e-01, 3.539006078675e-04, 2.6794e-01, 2.4250e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.993097991440e-01, 1.797693134862e+308, 5.1302e-01, 2.4507e-01, + 2DIAGNOSTIC, 2, -3.982232271183e-01, 1.797693134862e+308, 5.1522e-01, 2.2001e-03, + 2DIAGNOSTIC, 3, -4.006720662887e-01, 1.797693134862e+308, 5.1728e-01, 2.0661e-03, + 2DIAGNOSTIC, 4, -4.035244421000e-01, 1.797693134862e+308, 5.1959e-01, 2.3041e-03, + 2DIAGNOSTIC, 5, -4.038053160239e-01, 1.797693134862e+308, 5.2290e-01, 3.3181e-03, + 2DIAGNOSTIC, 6, -4.038293680049e-01, 1.797693134862e+308, 5.2518e-01, 2.2762e-03, + 2DIAGNOSTIC, 7, -4.037971335267e-01, 1.797693134862e+308, 5.2714e-01, 1.9550e-03, + 2DIAGNOSTIC, 8, -4.037758458107e-01, 1.797693134862e+308, 5.2937e-01, 2.2321e-03, + 2DIAGNOSTIC, 9, -4.038005722596e-01, 1.797693134862e+308, 5.3129e-01, 1.9200e-03, + 2DIAGNOSTIC, 10, -4.031780574221e-01, 7.837386136994e-04, 5.3357e-01, 2.2812e-03, + 2DIAGNOSTIC, 11, -4.033008135890e-01, 4.806120742189e-04, 5.3618e-01, 2.6131e-03, + 2DIAGNOSTIC, 12, -4.035391083223e-01, 1.329269041714e-04, 5.3846e-01, 2.2728e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.029659439491e-01, 1.797693134862e+308, 7.9593e-01, 2.5747e-01, + 2DIAGNOSTIC, 2, -3.031672939512e-01, 1.797693134862e+308, 8.0881e-01, 1.2877e-02, + 2DIAGNOSTIC, 3, -3.033414084317e-01, 1.797693134862e+308, 8.2161e-01, 1.2805e-02, + 2DIAGNOSTIC, 4, -3.038521426789e-01, 1.797693134862e+308, 8.3399e-01, 1.2384e-02, + 2DIAGNOSTIC, 5, -3.073819227338e-01, 1.797693134862e+308, 8.4650e-01, 1.2503e-02, + 2DIAGNOSTIC, 6, -3.112900972565e-01, 1.797693134862e+308, 8.6098e-01, 1.4480e-02, + 2DIAGNOSTIC, 7, -3.183199612058e-01, 1.797693134862e+308, 8.7817e-01, 1.7193e-02, + 2DIAGNOSTIC, 8, -3.188663716604e-01, 1.797693134862e+308, 8.9098e-01, 1.2808e-02, + 2DIAGNOSTIC, 9, -3.213867834882e-01, 1.797693134862e+308, 9.0385e-01, 1.2872e-02, + 2DIAGNOSTIC, 10, -3.241605272322e-01, 5.059255486999e-03, 9.1869e-01, 1.4837e-02, + 2DIAGNOSTIC, 11, -3.265707835496e-01, 4.993345533104e-03, 9.3739e-01, 1.8699e-02, + 2DIAGNOSTIC, 12, -3.272197720404e-01, 4.551034900614e-03, 9.4996e-01, 1.2576e-02, + 2DIAGNOSTIC, 13, -3.295466140077e-01, 3.948437385831e-03, 9.6290e-01, 1.2942e-02, + 2DIAGNOSTIC, 14, -3.520009105813e-01, 4.528515901593e-03, 9.7858e-01, 1.5671e-02, + 2DIAGNOSTIC, 15, -3.538879387664e-01, 4.891275151971e-03, 9.9578e-01, 1.7201e-02, + 2DIAGNOSTIC, 16, -3.611137829481e-01, 5.367412207497e-03, 1.0085e+00, 1.2735e-02, + 2DIAGNOSTIC, 17, -3.658116827488e-01, 5.899911669249e-03, 1.0235e+00, 1.5013e-02, + 2DIAGNOSTIC, 18, -3.732072439282e-01, 6.193375642862e-03, 1.0389e+00, 1.5370e-02, + 2DIAGNOSTIC, 19, -3.791323747811e-01, 6.237467368198e-03, 1.0523e+00, 1.3407e-02, + 2DIAGNOSTIC, 20, -3.847421610459e-01, 6.046568474475e-03, 1.0681e+00, 1.5783e-02, + 2DIAGNOSTIC, 21, -4.109005170577e-01, 6.455253306455e-03, 1.0841e+00, 1.5967e-02, + 2DIAGNOSTIC, 22, -4.531495700522e-01, 7.787966554887e-03, 1.1018e+00, 1.7786e-02, + 2DIAGNOSTIC, 23, -4.945632538939e-01, 9.705146946789e-03, 1.1196e+00, 1.7756e-02, + 2DIAGNOSTIC, 24, -5.305565668800e-01, 1.239315335254e-02, 1.1353e+00, 1.5673e-02, + 2DIAGNOSTIC, 25, -5.484930266792e-01, 1.421515144008e-02, 1.1490e+00, 1.3753e-02, + 2DIAGNOSTIC, 26, -5.552546182284e-01, 1.492088849722e-02, 1.1663e+00, 1.7249e-02, + 2DIAGNOSTIC, 27, -5.582794157520e-01, 1.436917857592e-02, 1.1820e+00, 1.5687e-02, + 2DIAGNOSTIC, 28, -5.604302684258e-01, 1.278120807357e-02, 1.1987e+00, 1.6738e-02, + 2DIAGNOSTIC, 29, -5.624610844347e-01, 1.036194231191e-02, 1.2115e+00, 1.2812e-02, + 2DIAGNOSTIC, 30, -5.631501976289e-01, 7.355445370324e-03, 1.2262e+00, 1.4665e-02, + 2DIAGNOSTIC, 31, -5.637418023742e-01, 4.536888033282e-03, 1.2408e+00, 1.4669e-02, + 2DIAGNOSTIC, 32, -5.638773615472e-01, 2.450633486690e-03, 1.2568e+00, 1.5912e-02, + 2DIAGNOSTIC, 33, -5.638843285349e-01, 1.157986545505e-03, 1.2743e+00, 1.7572e-02, + 2DIAGNOSTIC, 34, -5.638791863322e-01, 5.735773320426e-04, 1.2904e+00, 1.6041e-02, + 2DIAGNOSTIC, 35, -5.638888797337e-01, 3.237570131603e-04, 1.3064e+00, 1.6011e-02, + 2DIAGNOSTIC, 36, -5.638818079027e-01, 1.867840365388e-04, 1.3200e+00, 1.3653e-02, + 2DIAGNOSTIC, 37, -5.638721939722e-01, 9.556180371800e-05, 1.3351e+00, 1.5086e-02, + 2DIAGNOSTIC, 38, -5.638836654280e-01, 3.842097701659e-05, 1.3480e+00, 1.2925e-02, + 2DIAGNOSTIC, 39, -5.639264273218e-01, 1.606931053243e-05, 1.3610e+00, 1.2992e-02, + 2DIAGNOSTIC, 40, -5.640264434038e-01, 6.248427685221e-06, 1.3738e+00, 1.2749e-02, + 2DIAGNOSTIC, 41, -5.648347060637e-01, 1.842092704083e-05, 1.3903e+00, 1.6552e-02, + 2DIAGNOSTIC, 42, -5.649072094463e-01, 3.104803231852e-05, 1.4050e+00, 1.4676e-02, + 2DIAGNOSTIC, 43, -5.648852166088e-01, 3.998995120562e-05, 1.4235e+00, 1.8514e-02, + 2DIAGNOSTIC, 44, -5.649233610997e-01, 4.537072584621e-05, 1.4391e+00, 1.5620e-02, + 2DIAGNOSTIC, 45, -5.649653630996e-01, 4.687877889350e-05, 1.4564e+00, 1.7262e-02, + 2DIAGNOSTIC, 46, -5.649588094656e-01, 4.354900694904e-05, 1.4709e+00, 1.4470e-02, + 2DIAGNOSTIC, 47, -5.649498102300e-01, 3.606831036375e-05, 1.4833e+00, 1.2386e-02, + 2DIAGNOSTIC, 48, -5.649412461451e-01, 2.583024737581e-05, 1.4976e+00, 1.4323e-02, + 2DIAGNOSTIC, 49, -5.649176153247e-01, 1.405045661302e-05, 1.5100e+00, 1.2394e-02, + 2DIAGNOSTIC, 50, -5.649077270389e-01, 2.401190605274e-06, 1.5225e+00, 1.2478e-02, + 2DIAGNOSTIC, 51, -5.649378025269e-01, 1.156867593433e-06, 1.5350e+00, 1.2503e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.808535793389e-01, 1.797693134862e+308, 1.9535e+00, 4.1850e-01, + 2DIAGNOSTIC, 2, -4.810510237948e-01, 1.797693134862e+308, 2.0367e+00, 8.3258e-02, + 2DIAGNOSTIC, 3, -4.814801038429e-01, 1.797693134862e+308, 2.1200e+00, 8.3284e-02, + 2DIAGNOSTIC, 4, -4.818211115867e-01, 1.797693134862e+308, 2.2308e+00, 1.1082e-01, + 2DIAGNOSTIC, 5, -4.818501743908e-01, 1.797693134862e+308, 2.3261e+00, 9.5230e-02, + 2DIAGNOSTIC, 6, -4.818697545179e-01, 1.797693134862e+308, 2.4484e+00, 1.2233e-01, + 2DIAGNOSTIC, 7, -4.818748609915e-01, 1.797693134862e+308, 2.5819e+00, 1.3352e-01, + 2DIAGNOSTIC, 8, -4.818738896797e-01, 1.797693134862e+308, 2.6670e+00, 8.5074e-02, + 2DIAGNOSTIC, 9, -4.818716935236e-01, 1.797693134862e+308, 2.7706e+00, 1.0361e-01, + 2DIAGNOSTIC, 10, -4.818706335675e-01, 1.234888849955e-04, 2.8713e+00, 1.0067e-01, + 2DIAGNOSTIC, 11, -4.818695234841e-01, 6.764238104789e-05, 2.9718e+00, 1.0053e-01, + 2DIAGNOSTIC, 12, -4.818671177725e-01, 2.450379624666e-05, 3.0725e+00, 1.0071e-01, + 2DIAGNOSTIC, 13, -4.818659619646e-01, 5.041758916358e-06, 3.1617e+00, 8.9186e-02, + 2DIAGNOSTIC, 14, -4.818648340145e-01, 2.428667070203e-06, 3.2621e+00, 1.0044e-01, + 2DIAGNOSTIC, 15, -4.818649371814e-01, 1.277141214881e-06, 3.3474e+00, 8.5243e-02, + 2DIAGNOSTIC, 16, -4.818638777799e-01, 1.022657577371e-06, 3.4526e+00, 1.0528e-01, + 2DIAGNOSTIC, 17, -4.818641635481e-01, 1.075796369057e-06, 3.5580e+00, 1.0533e-01, + 2DIAGNOSTIC, 18, -4.818631430456e-01, 1.132766707192e-06, 3.6459e+00, 8.7931e-02, + 2DIAGNOSTIC, 19, -4.818635571971e-01, 1.187740105144e-06, 3.7458e+00, 9.9855e-02, + 2DIAGNOSTIC, 20, -4.818639034631e-01, 1.260548335894e-06, 3.8592e+00, 1.1345e-01, + 2DIAGNOSTIC, 21, -4.818627861375e-01, 1.295504826797e-06, 3.9595e+00, 1.0033e-01, + 2DIAGNOSTIC, 22, -4.818616255680e-01, 1.253954840401e-06, 4.0431e+00, 8.3583e-02, + 2DIAGNOSTIC, 23, -4.818618466458e-01, 1.211473420804e-06, 4.1408e+00, 9.7692e-02, + 2DIAGNOSTIC, 24, -4.818622021473e-01, 1.168325097993e-06, 4.2399e+00, 9.9059e-02, + 2DIAGNOSTIC, 25, -4.818627628839e-01, 1.158775943873e-06, 4.3357e+00, 9.5869e-02, + 2DIAGNOSTIC, 26, -4.818633009542e-01, 1.148840668402e-06, 4.4322e+00, 9.6409e-02, + 2DIAGNOSTIC, 27, -4.818615109860e-01, 1.115138163206e-06, 4.5194e+00, 8.7255e-02, + 2DIAGNOSTIC, 28, -4.818628614390e-01, 1.097601467444e-06, 4.6354e+00, 1.1603e-01, + 2DIAGNOSTIC, 29, -4.818687825537e-01, 1.211700272882e-06, 4.7546e+00, 1.1914e-01, + 2DIAGNOSTIC, 30, -4.818692466408e-01, 1.319876927676e-06, 4.8540e+00, 9.9449e-02, + 2DIAGNOSTIC, 31, -4.818670449700e-01, 1.335598651751e-06, 4.9519e+00, 9.7855e-02, + 2DIAGNOSTIC, 32, -4.818648541272e-01, 1.262847285070e-06, 5.0532e+00, 1.0132e-01, + 2DIAGNOSTIC, 33, -4.818678262755e-01, 1.226294591095e-06, 5.1385e+00, 8.5324e-02, + 2DIAGNOSTIC, 34, -4.818659866688e-01, 1.136171667131e-06, 5.2382e+00, 9.9720e-02, + 2DIAGNOSTIC, 35, -4.818692587896e-01, 1.097016751862e-06, 5.3387e+00, 1.0043e-01, + 2DIAGNOSTIC, 36, -4.818689918539e-01, 1.048901651354e-06, 5.4355e+00, 9.6800e-02, + Elapsed time (stage 0): 5.5697e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.110383434187e-01, 1.797693134862e+308, 2.1438e-01, 2.1438e-01, + 2DIAGNOSTIC, 2, -8.134706789923e-01, 1.797693134862e+308, 2.1573e-01, 1.3518e-03, + 2DIAGNOSTIC, 3, -8.177668108413e-01, 1.797693134862e+308, 2.1707e-01, 1.3399e-03, + 2DIAGNOSTIC, 4, -8.247871358466e-01, 1.797693134862e+308, 2.1831e-01, 1.2410e-03, + 2DIAGNOSTIC, 5, -8.333079561810e-01, 1.797693134862e+308, 2.1965e-01, 1.3330e-03, + 2DIAGNOSTIC, 6, -8.457757768021e-01, 1.797693134862e+308, 2.2093e-01, 1.2789e-03, + 2DIAGNOSTIC, 7, -8.658944967440e-01, 1.797693134862e+308, 2.2330e-01, 2.3761e-03, + 2DIAGNOSTIC, 8, -8.695439663826e-01, 1.797693134862e+308, 2.2486e-01, 1.5540e-03, + 2DIAGNOSTIC, 9, -8.708236131606e-01, 1.797693134862e+308, 2.2614e-01, 1.2841e-03, + 2DIAGNOSTIC, 10, -8.750548240884e-01, 5.794460936543e-03, 2.2791e-01, 1.7710e-03, + 2DIAGNOSTIC, 11, -8.769597184262e-01, 5.076546836507e-03, 2.2930e-01, 1.3912e-03, + 2DIAGNOSTIC, 12, -8.780048023411e-01, 4.117551275555e-03, 2.3087e-01, 1.5662e-03, + 2DIAGNOSTIC, 13, -8.794734909928e-01, 3.088627895651e-03, 2.3227e-01, 1.4012e-03, + 2DIAGNOSTIC, 14, -8.819698191368e-01, 2.162065432235e-03, 2.3377e-01, 1.5039e-03, + 2DIAGNOSTIC, 15, -8.848082182736e-01, 1.413713872611e-03, 2.3529e-01, 1.5190e-03, + 2DIAGNOSTIC, 16, -8.907689813995e-01, 1.002005993902e-03, 2.3676e-01, 1.4670e-03, + 2DIAGNOSTIC, 17, -9.029256762390e-01, 1.172674298640e-03, 2.3866e-01, 1.9028e-03, + 2DIAGNOSTIC, 18, -9.244438096680e-01, 1.669959939722e-03, 2.4052e-01, 1.8530e-03, + 2DIAGNOSTIC, 19, -9.292378494279e-01, 2.052792538536e-03, 2.4215e-01, 1.6351e-03, + 2DIAGNOSTIC, 20, -9.315306431891e-01, 2.314692776097e-03, 2.4369e-01, 1.5390e-03, + 2DIAGNOSTIC, 21, -9.330051358606e-01, 2.390732561004e-03, 2.4548e-01, 1.7941e-03, + 2DIAGNOSTIC, 22, -9.370332026066e-01, 2.308248752465e-03, 2.4712e-01, 1.6348e-03, + 2DIAGNOSTIC, 23, -9.565516700049e-01, 2.305072117604e-03, 2.5178e-01, 4.6630e-03, + 2DIAGNOSTIC, 24, -9.565909233514e-01, 2.114763800711e-03, 2.5349e-01, 1.7090e-03, + 2DIAGNOSTIC, 25, -9.568413440323e-01, 1.789961655900e-03, 2.5523e-01, 1.7412e-03, + 2DIAGNOSTIC, 26, -9.572326926257e-01, 1.405567097342e-03, 2.5697e-01, 1.7390e-03, + 2DIAGNOSTIC, 27, -9.577780190064e-01, 1.061879233225e-03, 2.5871e-01, 1.7431e-03, + 2DIAGNOSTIC, 28, -9.577755337246e-01, 8.841663140350e-04, 2.6066e-01, 1.9500e-03, + 2DIAGNOSTIC, 29, -9.582610022499e-01, 6.936379203796e-04, 2.6216e-01, 1.4970e-03, + 2DIAGNOSTIC, 30, -9.580669742902e-01, 4.767994720066e-04, 2.6379e-01, 1.6310e-03, + 2DIAGNOSTIC, 31, -9.584072452846e-01, 2.496585847785e-04, 2.6523e-01, 1.4350e-03, + 2DIAGNOSTIC, 32, -9.580879613209e-01, 4.501875678089e-05, 2.6682e-01, 1.5960e-03, + 2DIAGNOSTIC, 33, -9.583105085481e-01, 3.771235063802e-05, 2.6838e-01, 1.5590e-03, + 2DIAGNOSTIC, 34, -9.579036583561e-01, 2.393666218687e-05, 2.6993e-01, 1.5509e-03, + 2DIAGNOSTIC, 35, -9.583122279149e-01, 1.475998332493e-05, 2.7157e-01, 1.6379e-03, + 2DIAGNOSTIC, 36, -9.593341170722e-01, 1.688546194193e-05, 2.7307e-01, 1.4961e-03, + 2DIAGNOSTIC, 37, -9.598497367872e-01, 2.612464266184e-05, 2.7461e-01, 1.5390e-03, + 2DIAGNOSTIC, 38, -9.602837127917e-01, 3.593439814564e-05, 2.7623e-01, 1.6210e-03, + 2DIAGNOSTIC, 39, -9.591771069103e-01, 3.707157982457e-05, 2.7924e-01, 3.0100e-03, + 2DIAGNOSTIC, 40, -9.588860787716e-01, 3.112886880806e-05, 2.8101e-01, 1.7750e-03, + 2DIAGNOSTIC, 41, -9.584148306201e-01, 2.150828194792e-05, 2.8282e-01, 1.8110e-03, + 2DIAGNOSTIC, 42, -9.591527111474e-01, 1.328930675135e-05, 2.8485e-01, 2.0301e-03, + 2DIAGNOSTIC, 43, -9.592964871210e-01, 6.896087228283e-06, 2.8646e-01, 1.6100e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.781448124840e-01, 1.797693134862e+308, 5.1225e-01, 2.2578e-01, + 2DIAGNOSTIC, 2, -7.776275365041e-01, 1.797693134862e+308, 5.1467e-01, 2.4290e-03, + 2DIAGNOSTIC, 3, -7.806238432883e-01, 1.797693134862e+308, 5.1705e-01, 2.3718e-03, + 2DIAGNOSTIC, 4, -7.843413039041e-01, 1.797693134862e+308, 5.1947e-01, 2.4250e-03, + 2DIAGNOSTIC, 5, -7.862361651669e-01, 1.797693134862e+308, 5.2145e-01, 1.9832e-03, + 2DIAGNOSTIC, 6, -7.880945895969e-01, 1.797693134862e+308, 5.2348e-01, 2.0268e-03, + 2DIAGNOSTIC, 7, -7.905916363519e-01, 1.797693134862e+308, 5.2547e-01, 1.9848e-03, + 2DIAGNOSTIC, 8, -7.946924574657e-01, 1.797693134862e+308, 5.2823e-01, 2.7630e-03, + 2DIAGNOSTIC, 9, -8.040270557883e-01, 1.797693134862e+308, 5.3309e-01, 4.8602e-03, + 2DIAGNOSTIC, 10, -8.042729187279e-01, 2.247459708238e-03, 5.3565e-01, 2.5649e-03, + 2DIAGNOSTIC, 11, -8.044525709440e-01, 2.149821986323e-03, 5.3919e-01, 3.5341e-03, + 2DIAGNOSTIC, 12, -8.044358333984e-01, 1.862787162777e-03, 5.4231e-01, 3.1230e-03, + 2DIAGNOSTIC, 13, -8.046764908751e-01, 1.537677009287e-03, 5.4538e-01, 3.0689e-03, + 2DIAGNOSTIC, 14, -8.048795961466e-01, 1.216360067799e-03, 5.4833e-01, 2.9511e-03, + 2DIAGNOSTIC, 15, -8.054165267254e-01, 8.857303042620e-04, 5.5074e-01, 2.4040e-03, + 2DIAGNOSTIC, 16, -8.063335774992e-01, 5.806241164103e-04, 5.5312e-01, 2.3849e-03, + 2DIAGNOSTIC, 17, -8.078414315542e-01, 3.423967296491e-04, 5.5547e-01, 2.3510e-03, + 2DIAGNOSTIC, 18, -8.095115151546e-01, 2.082374126845e-04, 5.5767e-01, 2.2020e-03, + 2DIAGNOSTIC, 19, -8.118843590393e-01, 2.884581633624e-04, 5.5996e-01, 2.2871e-03, + 2DIAGNOSTIC, 20, -8.141057734609e-01, 3.771028578799e-04, 5.6257e-01, 2.6121e-03, + 2DIAGNOSTIC, 21, -8.167581494649e-01, 4.696901495120e-04, 5.6550e-01, 2.9259e-03, + 2DIAGNOSTIC, 22, -8.181163701114e-01, 5.309748835990e-04, 5.6810e-01, 2.6050e-03, + 2DIAGNOSTIC, 23, -8.185876999842e-01, 5.483293038877e-04, 5.7038e-01, 2.2750e-03, + 2DIAGNOSTIC, 24, -8.188395651439e-01, 5.198750992402e-04, 5.7358e-01, 3.2051e-03, + 2DIAGNOSTIC, 25, -8.203210161118e-01, 4.734304918496e-04, 5.7620e-01, 2.6209e-03, + 2DIAGNOSTIC, 26, -8.204208127902e-01, 3.991005206933e-04, 5.7856e-01, 2.3580e-03, + 2DIAGNOSTIC, 27, -8.205419161079e-01, 3.143032747938e-04, 5.8126e-01, 2.7010e-03, + 2DIAGNOSTIC, 28, -8.202471957729e-01, 2.236646074539e-04, 5.8387e-01, 2.6069e-03, + 2DIAGNOSTIC, 29, -8.209019576906e-01, 1.551487832065e-04, 5.8686e-01, 2.9941e-03, + 2DIAGNOSTIC, 30, -8.206876203633e-01, 9.918845795258e-05, 5.8929e-01, 2.4300e-03, + 2DIAGNOSTIC, 31, -8.207743878728e-01, 6.847601635333e-05, 5.9154e-01, 2.2461e-03, + 2DIAGNOSTIC, 32, -8.208516410576e-01, 4.934333232227e-05, 5.9381e-01, 2.2700e-03, + 2DIAGNOSTIC, 33, -8.209534321206e-01, 3.303071517351e-05, 5.9610e-01, 2.2860e-03, + 2DIAGNOSTIC, 34, -8.211415091075e-01, 1.870176203837e-05, 5.9835e-01, 2.2490e-03, + 2DIAGNOSTIC, 35, -8.214648491023e-01, 2.158520677516e-05, 6.0061e-01, 2.2609e-03, + 2DIAGNOSTIC, 36, -8.215331264623e-01, 2.395864361016e-05, 6.0318e-01, 2.5759e-03, + 2DIAGNOSTIC, 37, -8.214794661058e-01, 2.479960251281e-05, 6.0605e-01, 2.8698e-03, + 2DIAGNOSTIC, 38, -8.214695481845e-01, 2.036103709138e-05, 6.0959e-01, 3.5360e-03, + 2DIAGNOSTIC, 39, -8.212153215199e-01, 1.794329879543e-05, 6.1220e-01, 2.6152e-03, + 2DIAGNOSTIC, 40, -8.212999507595e-01, 1.287733342694e-05, 6.1451e-01, 2.3031e-03, + 2DIAGNOSTIC, 41, -8.210641495626e-01, 5.585557758075e-06, 6.1676e-01, 2.2550e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.839114665760e-01, 1.797693134862e+308, 8.5419e-01, 2.3743e-01, + 2DIAGNOSTIC, 2, -6.850165579338e-01, 1.797693134862e+308, 8.6745e-01, 1.3261e-02, + 2DIAGNOSTIC, 3, -6.863586293111e-01, 1.797693134862e+308, 8.8064e-01, 1.3184e-02, + 2DIAGNOSTIC, 4, -6.877509016364e-01, 1.797693134862e+308, 8.9360e-01, 1.2960e-02, + 2DIAGNOSTIC, 5, -6.894602850248e-01, 1.797693134862e+308, 9.0656e-01, 1.2961e-02, + 2DIAGNOSTIC, 6, -6.912487628427e-01, 1.797693134862e+308, 9.1977e-01, 1.3212e-02, + 2DIAGNOSTIC, 7, -6.927509811356e-01, 1.797693134862e+308, 9.4049e-01, 2.0719e-02, + 2DIAGNOSTIC, 8, -6.933361528024e-01, 1.797693134862e+308, 9.5570e-01, 1.5210e-02, + 2DIAGNOSTIC, 9, -6.934964982191e-01, 1.797693134862e+308, 9.6914e-01, 1.3440e-02, + 2DIAGNOSTIC, 10, -6.937585362699e-01, 1.024462698084e-03, 9.8248e-01, 1.3341e-02, + 2DIAGNOSTIC, 11, -6.944121052521e-01, 8.247277335276e-04, 9.9584e-01, 1.3358e-02, + 2DIAGNOSTIC, 12, -6.952798697291e-01, 6.510151134219e-04, 1.0168e+00, 2.0972e-02, + 2DIAGNOSTIC, 13, -6.953781486197e-01, 4.906572305433e-04, 1.0314e+00, 1.4545e-02, + 2DIAGNOSTIC, 14, -6.954373365829e-01, 3.519242828529e-04, 1.0454e+00, 1.4075e-02, + 2DIAGNOSTIC, 15, -6.956288877759e-01, 2.514859615874e-04, 1.0640e+00, 1.8608e-02, + 2DIAGNOSTIC, 16, -6.959005594820e-01, 1.923753419096e-04, 1.0778e+00, 1.3726e-02, + 2DIAGNOSTIC, 17, -6.963940880286e-01, 1.701554143887e-04, 1.0974e+00, 1.9605e-02, + 2DIAGNOSTIC, 18, -6.966115130390e-01, 1.530972782994e-04, 1.1191e+00, 2.1762e-02, + 2DIAGNOSTIC, 19, -6.964744173166e-01, 1.246891790100e-04, 1.1330e+00, 1.3865e-02, + 2DIAGNOSTIC, 20, -6.966578653014e-01, 9.691731487600e-05, 1.1486e+00, 1.5591e-02, + 2DIAGNOSTIC, 21, -6.968037018579e-01, 7.789001206120e-05, 1.1627e+00, 1.4150e-02, + 2DIAGNOSTIC, 22, -6.970300405290e-01, 7.361523887088e-05, 1.1770e+00, 1.4272e-02, + 2DIAGNOSTIC, 23, -6.973163117142e-01, 6.978654146643e-05, 1.1912e+00, 1.4198e-02, + 2DIAGNOSTIC, 24, -6.975384254402e-01, 6.473194511206e-05, 1.2059e+00, 1.4689e-02, + 2DIAGNOSTIC, 25, -6.978296587789e-01, 6.203270031534e-05, 1.2203e+00, 1.4447e-02, + 2DIAGNOSTIC, 26, -6.983394497734e-01, 6.584362147980e-05, 1.2362e+00, 1.5899e-02, + 2DIAGNOSTIC, 27, -6.988015570206e-01, 7.750818044844e-05, 1.2563e+00, 2.0033e-02, + 2DIAGNOSTIC, 28, -6.988628452019e-01, 8.520712961958e-05, 1.2744e+00, 1.8154e-02, + 2DIAGNOSTIC, 29, -6.988598265465e-01, 8.254695816767e-05, 1.2897e+00, 1.5272e-02, + 2DIAGNOSTIC, 30, -6.990669410983e-01, 7.774597314635e-05, 1.3076e+00, 1.7945e-02, + 2DIAGNOSTIC, 31, -6.991053708351e-01, 6.822289429819e-05, 1.3236e+00, 1.5909e-02, + 2DIAGNOSTIC, 32, -6.990956963015e-01, 5.558283251107e-05, 1.3371e+00, 1.3581e-02, + 2DIAGNOSTIC, 33, -6.991052033145e-01, 4.228715122939e-05, 1.3510e+00, 1.3834e-02, + 2DIAGNOSTIC, 34, -6.991140310657e-01, 2.868902910662e-05, 1.3653e+00, 1.4370e-02, + 2DIAGNOSTIC, 35, -6.991638446938e-01, 1.707998989847e-05, 1.3789e+00, 1.3566e-02, + 2DIAGNOSTIC, 36, -6.992459297252e-01, 1.113115965361e-05, 1.3925e+00, 1.3623e-02, + 2DIAGNOSTIC, 37, -6.993117542439e-01, 1.036206749556e-05, 1.4056e+00, 1.3104e-02, + 2DIAGNOSTIC, 38, -6.995905639753e-01, 1.241824543104e-05, 1.4187e+00, 1.3018e-02, + 2DIAGNOSTIC, 39, -6.999780931352e-01, 1.716889344726e-05, 1.4377e+00, 1.9095e-02, + 2DIAGNOSTIC, 40, -6.999925565619e-01, 2.229364870615e-05, 1.4530e+00, 1.5244e-02, + 2DIAGNOSTIC, 41, -7.000782373018e-01, 2.642722601281e-05, 1.4707e+00, 1.7749e-02, + 2DIAGNOSTIC, 42, -7.000732003223e-01, 2.779275436176e-05, 1.4850e+00, 1.4244e-02, + 2DIAGNOSTIC, 43, -7.002318534120e-01, 2.807739101514e-05, 1.5012e+00, 1.6203e-02, + 2DIAGNOSTIC, 44, -7.003380574539e-01, 2.670906183369e-05, 1.5161e+00, 1.4933e-02, + 2DIAGNOSTIC, 45, -7.003405093951e-01, 2.338918354085e-05, 1.5295e+00, 1.3330e-02, + 2DIAGNOSTIC, 46, -7.005061783099e-01, 2.033257324224e-05, 1.5427e+00, 1.3265e-02, + 2DIAGNOSTIC, 47, -7.006002469593e-01, 1.685547657108e-05, 1.5558e+00, 1.3097e-02, + 2DIAGNOSTIC, 48, -7.007433167762e-01, 1.544878135504e-05, 1.5788e+00, 2.3028e-02, + 2DIAGNOSTIC, 49, -7.007437277288e-01, 1.589616435445e-05, 1.5960e+00, 1.7136e-02, + 2DIAGNOSTIC, 50, -7.007437316708e-01, 1.500091768603e-05, 1.6110e+00, 1.5036e-02, + 2DIAGNOSTIC, 51, -7.007437359047e-01, 1.347302135164e-05, 1.6279e+00, 1.6848e-02, + 2DIAGNOSTIC, 52, -7.007437371476e-01, 1.068567579057e-05, 1.6428e+00, 1.4973e-02, + 2DIAGNOSTIC, 53, -7.007437380539e-01, 8.234804311533e-06, 1.6581e+00, 1.5223e-02, + 2DIAGNOSTIC, 54, -7.007437384402e-01, 5.966653769347e-06, 1.6713e+00, 1.3210e-02, + 2DIAGNOSTIC, 55, -7.007437394765e-01, 3.273987137876e-06, 1.6847e+00, 1.3418e-02, + 2DIAGNOSTIC, 56, -7.007437421338e-01, 1.618448133549e-06, 1.6976e+00, 1.2954e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.898691909939e-01, 1.797693134862e+308, 2.1261e+00, 4.2847e-01, + 2DIAGNOSTIC, 2, -5.907820012944e-01, 1.797693134862e+308, 2.2208e+00, 9.4740e-02, + 2DIAGNOSTIC, 3, -5.917761328907e-01, 1.797693134862e+308, 2.3153e+00, 9.4482e-02, + 2DIAGNOSTIC, 4, -5.927808607549e-01, 1.797693134862e+308, 2.4107e+00, 9.5348e-02, + 2DIAGNOSTIC, 5, -5.932964910244e-01, 1.797693134862e+308, 2.5070e+00, 9.6296e-02, + 2DIAGNOSTIC, 6, -5.935152928834e-01, 1.797693134862e+308, 2.6871e+00, 1.8017e-01, + 2DIAGNOSTIC, 7, -5.935455672748e-01, 1.797693134862e+308, 2.7911e+00, 1.0400e-01, + 2DIAGNOSTIC, 8, -5.936071719148e-01, 1.797693134862e+308, 2.9195e+00, 1.2832e-01, + 2DIAGNOSTIC, 9, -5.936080633856e-01, 1.797693134862e+308, 3.0330e+00, 1.1354e-01, + 2DIAGNOSTIC, 10, -5.936051542724e-01, 3.812542519412e-04, 3.1492e+00, 1.1615e-01, + 2DIAGNOSTIC, 11, -5.936094685883e-01, 2.276518496029e-04, 3.2619e+00, 1.1275e-01, + 2DIAGNOSTIC, 12, -5.936067505213e-01, 1.155084613599e-04, 3.3709e+00, 1.0900e-01, + 2DIAGNOSTIC, 13, -5.935991359054e-01, 4.608839082289e-05, 3.4787e+00, 1.0782e-01, + 2DIAGNOSTIC, 14, -5.936022912773e-01, 1.674407267617e-05, 3.5839e+00, 1.0522e-01, + 2DIAGNOSTIC, 15, -5.936003251944e-01, 6.246221325612e-06, 3.6750e+00, 9.1087e-02, + 2DIAGNOSTIC, 16, -5.935968320016e-01, 3.127598896688e-06, 3.7652e+00, 9.0216e-02, + 2DIAGNOSTIC, 17, -5.935994742532e-01, 1.153858110753e-06, 3.8729e+00, 1.0765e-01, + 2DIAGNOSTIC, 18, -5.936046570509e-01, 1.243799054952e-06, 3.9784e+00, 1.0553e-01, + 2DIAGNOSTIC, 19, -5.936048851203e-01, 1.398642933477e-06, 4.0850e+00, 1.0658e-01, + 2DIAGNOSTIC, 20, -5.936045426085e-01, 1.482294296716e-06, 4.1998e+00, 1.1480e-01, + 2DIAGNOSTIC, 21, -5.936077611461e-01, 1.744404432472e-06, 4.3133e+00, 1.1346e-01, + 2DIAGNOSTIC, 22, -5.936082529653e-01, 1.914614717255e-06, 4.4399e+00, 1.2659e-01, + 2DIAGNOSTIC, 23, -5.936069058327e-01, 1.834362591248e-06, 4.5539e+00, 1.1407e-01, + 2DIAGNOSTIC, 24, -5.936043148427e-01, 1.732498464850e-06, 4.6851e+00, 1.3117e-01, + 2DIAGNOSTIC, 25, -5.936053582987e-01, 1.588241161025e-06, 4.8008e+00, 1.1565e-01, + 2DIAGNOSTIC, 26, -5.936046854027e-01, 1.345978571134e-06, 4.9162e+00, 1.1546e-01, + 2DIAGNOSTIC, 27, -5.936037367494e-01, 1.137111034895e-06, 5.0254e+00, 1.0913e-01, + 2DIAGNOSTIC, 28, -5.936025179295e-01, 1.016787557172e-06, 5.1167e+00, 9.1306e-02, + Elapsed time (stage 1): 5.2545e+00 + + +Total elapsed time: 1.0827e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:21:14 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:21:15 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5601b8a3e4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 61.8168, -102.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5601b8a43fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff9af0c1010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5601b8a3f850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 61.8168, -102.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5601b8a3cf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff9aba02010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5601b8a56b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 61.8168, -102.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5601b8a43550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff9a8343010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5601b8a5bd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 61.8168, -102.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5601b8a59c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff9a4c84010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x5601b8a5df70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 61.8168, -102.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5601b8a5c3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff9a15c5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5601b8a5e540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 61.8168, -102.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5601b8a5e4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff99df06010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.246871224357e-01, 1.797693134862e+308, 2.2054e-01, 2.2054e-01, + 2DIAGNOSTIC, 2, -6.279456412952e-01, 1.797693134862e+308, 2.2291e-01, 2.3668e-03, + 2DIAGNOSTIC, 3, -6.332309122556e-01, 1.797693134862e+308, 2.2514e-01, 2.2280e-03, + 2DIAGNOSTIC, 4, -6.402959502989e-01, 1.797693134862e+308, 2.2733e-01, 2.1939e-03, + 2DIAGNOSTIC, 5, -6.486933273159e-01, 1.797693134862e+308, 2.2936e-01, 2.0339e-03, + 2DIAGNOSTIC, 6, -6.577021850003e-01, 1.797693134862e+308, 2.3171e-01, 2.3489e-03, + 2DIAGNOSTIC, 7, -6.593643796053e-01, 1.797693134862e+308, 2.3394e-01, 2.2249e-03, + 2DIAGNOSTIC, 8, -6.596476330834e-01, 1.797693134862e+308, 2.3592e-01, 1.9791e-03, + 2DIAGNOSTIC, 9, -6.602764644591e-01, 1.797693134862e+308, 2.3790e-01, 1.9860e-03, + 2DIAGNOSTIC, 10, -6.613736463025e-01, 4.124565646366e-03, 2.4068e-01, 2.7728e-03, + 2DIAGNOSTIC, 11, -6.619599595995e-01, 3.110508360658e-03, 2.4315e-01, 2.4791e-03, + 2DIAGNOSTIC, 12, -6.620353298885e-01, 2.112495786514e-03, 2.4539e-01, 2.2330e-03, + 2DIAGNOSTIC, 13, -6.623351120362e-01, 1.269921851414e-03, 2.4788e-01, 2.4900e-03, + 2DIAGNOSTIC, 14, -6.629819001907e-01, 6.712539991373e-04, 2.5031e-01, 2.4371e-03, + 2DIAGNOSTIC, 15, -6.633919812099e-01, 3.406417510338e-04, 2.5329e-01, 2.9771e-03, + 2DIAGNOSTIC, 16, -6.634352887627e-01, 2.659217879413e-04, 2.5582e-01, 2.5291e-03, + 2DIAGNOSTIC, 17, -6.634473763623e-01, 2.193607166632e-04, 2.5813e-01, 2.3060e-03, + 2DIAGNOSTIC, 18, -6.634549885325e-01, 1.650856268254e-04, 2.6079e-01, 2.6619e-03, + 2DIAGNOSTIC, 19, -6.634598002842e-01, 1.151308869765e-04, 2.6321e-01, 2.4190e-03, + 2DIAGNOSTIC, 20, -6.634658417678e-01, 8.318821591220e-05, 2.6592e-01, 2.7170e-03, + 2DIAGNOSTIC, 21, -6.635964915067e-01, 6.173047963040e-05, 2.6854e-01, 2.6200e-03, + 2DIAGNOSTIC, 22, -6.638986653551e-01, 4.410109182207e-05, 2.7558e-01, 7.0310e-03, + 2DIAGNOSTIC, 23, -6.638986446416e-01, 2.930165309371e-05, 2.7773e-01, 2.1560e-03, + 2DIAGNOSTIC, 24, -6.638986639154e-01, 2.470281659178e-05, 2.7996e-01, 2.2240e-03, + 2DIAGNOSTIC, 25, -6.638986964996e-01, 2.543830562505e-05, 2.8214e-01, 2.1889e-03, + 2DIAGNOSTIC, 26, -6.638987515774e-01, 2.450833355572e-05, 2.8524e-01, 3.0930e-03, + 2DIAGNOSTIC, 27, -6.638988446518e-01, 2.156125361753e-05, 2.8837e-01, 3.1300e-03, + 2DIAGNOSTIC, 28, -6.638990018639e-01, 1.704012474785e-05, 2.9151e-01, 3.1450e-03, + 2DIAGNOSTIC, 29, -6.638992672066e-01, 1.150306173028e-05, 2.9473e-01, 3.2210e-03, + 2DIAGNOSTIC, 30, -6.638997142926e-01, 5.447556109511e-06, 2.9712e-01, 2.3890e-03, + 2DIAGNOSTIC, 31, -6.639004648427e-01, 1.081108115239e-06, 2.9962e-01, 2.4960e-03, + 2DIAGNOSTIC, 32, -6.639017113983e-01, 1.078146920248e-06, 3.0211e-01, 2.4960e-03, + 2DIAGNOSTIC, 33, -6.639037813657e-01, 1.094678062107e-06, 3.0455e-01, 2.4309e-03, + 2DIAGNOSTIC, 34, -6.639071905763e-01, 1.141585427848e-06, 3.0693e-01, 2.3839e-03, + 2DIAGNOSTIC, 35, -6.639126951241e-01, 1.234396579099e-06, 3.0937e-01, 2.4412e-03, + 2DIAGNOSTIC, 36, -6.639213112308e-01, 1.394412616089e-06, 3.1177e-01, 2.4040e-03, + 2DIAGNOSTIC, 37, -6.639342423370e-01, 1.647749411172e-06, 3.1436e-01, 2.5830e-03, + 2DIAGNOSTIC, 38, -6.639537061700e-01, 2.033305921148e-06, 3.1690e-01, 2.5451e-03, + 2DIAGNOSTIC, 39, -6.639690364778e-01, 2.454229019913e-06, 3.1917e-01, 2.2659e-03, + 2DIAGNOSTIC, 40, -6.638575923421e-01, 1.501392903804e-06, 3.2147e-01, 2.3000e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.559925787827e-01, 1.797693134862e+308, 5.7741e-01, 2.5594e-01, + 2DIAGNOSTIC, 2, -5.566709573207e-01, 1.797693134862e+308, 5.9305e-01, 1.5639e-02, + 2DIAGNOSTIC, 3, -5.570706624891e-01, 1.797693134862e+308, 6.0791e-01, 1.4862e-02, + 2DIAGNOSTIC, 4, -5.571564536918e-01, 1.797693134862e+308, 6.2292e-01, 1.5005e-02, + 2DIAGNOSTIC, 5, -5.573672434864e-01, 1.797693134862e+308, 6.3657e-01, 1.3653e-02, + 2DIAGNOSTIC, 6, -5.576072959605e-01, 1.797693134862e+308, 6.5255e-01, 1.5984e-02, + 2DIAGNOSTIC, 7, -5.578462860536e-01, 1.797693134862e+308, 6.7024e-01, 1.7693e-02, + 2DIAGNOSTIC, 8, -5.582536950819e-01, 1.797693134862e+308, 6.9496e-01, 2.4717e-02, + 2DIAGNOSTIC, 9, -5.582704177696e-01, 1.797693134862e+308, 7.1281e-01, 1.7844e-02, + 2DIAGNOSTIC, 10, -5.582601792945e-01, 2.508230941393e-04, 7.2642e-01, 1.3612e-02, + 2DIAGNOSTIC, 11, -5.582419824517e-01, 1.811122194659e-04, 7.4233e-01, 1.5911e-02, + 2DIAGNOSTIC, 12, -5.582309869127e-01, 1.348608699105e-04, 7.5625e-01, 1.3926e-02, + 2DIAGNOSTIC, 13, -5.582099332747e-01, 9.848922136824e-05, 7.7205e-01, 1.5795e-02, + 2DIAGNOSTIC, 14, -5.581793003969e-01, 6.057312788639e-05, 7.8589e-01, 1.3842e-02, + 2DIAGNOSTIC, 15, -5.581754056397e-01, 2.953476569996e-05, 8.0155e-01, 1.5659e-02, + 2DIAGNOSTIC, 16, -5.581688629932e-01, 7.242750553513e-06, 8.1705e-01, 1.5504e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.697455165165e-01, 1.797693134862e+308, 1.2039e+00, 3.8685e-01, + 2DIAGNOSTIC, 2, -4.701282634986e-01, 1.797693134862e+308, 1.2991e+00, 9.5184e-02, + 2DIAGNOSTIC, 3, -4.705523072674e-01, 1.797693134862e+308, 1.3938e+00, 9.4749e-02, + 2DIAGNOSTIC, 4, -4.708608129375e-01, 1.797693134862e+308, 1.4874e+00, 9.3611e-02, + 2DIAGNOSTIC, 5, -4.711245159367e-01, 1.797693134862e+308, 1.6998e+00, 2.1235e-01, + 2DIAGNOSTIC, 6, -4.711239857917e-01, 1.797693134862e+308, 1.8073e+00, 1.0753e-01, + 2DIAGNOSTIC, 7, -4.711225419041e-01, 1.797693134862e+308, 1.9143e+00, 1.0694e-01, + 2DIAGNOSTIC, 8, -4.711206544023e-01, 1.797693134862e+308, 2.0199e+00, 1.0568e-01, + 2DIAGNOSTIC, 9, -4.711188688019e-01, 1.797693134862e+308, 2.1642e+00, 1.4422e-01, + 2DIAGNOSTIC, 10, -4.711164012568e-01, 1.696394525791e-04, 2.2707e+00, 1.0654e-01, + 2DIAGNOSTIC, 11, -4.711151845800e-01, 9.392501070846e-05, 2.3635e+00, 9.2759e-02, + 2DIAGNOSTIC, 12, -4.711140198840e-01, 4.166084593388e-05, 2.4699e+00, 1.0646e-01, + 2DIAGNOSTIC, 13, -4.711129101233e-01, 1.329346911161e-05, 2.5635e+00, 9.3594e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.119553511061e-01, 1.797693134862e+308, 3.8139e+00, 1.2504e+00, + 2DIAGNOSTIC, 2, -4.120417358841e-01, 1.797693134862e+308, 4.3692e+00, 5.5537e-01, + 2DIAGNOSTIC, 3, -4.121885473095e-01, 1.797693134862e+308, 5.6903e+00, 1.3210e+00, + 2DIAGNOSTIC, 4, -4.121885483027e-01, 1.797693134862e+308, 6.3860e+00, 6.9571e-01, + 2DIAGNOSTIC, 5, -4.121883459530e-01, 1.797693134862e+308, 7.0066e+00, 6.2058e-01, + 2DIAGNOSTIC, 6, -4.121882559753e-01, 1.797693134862e+308, 7.6592e+00, 6.5257e-01, + 2DIAGNOSTIC, 7, -4.121881528454e-01, 1.797693134862e+308, 8.3463e+00, 6.8716e-01, + 2DIAGNOSTIC, 8, -4.121880297946e-01, 1.797693134862e+308, 9.0033e+00, 6.5698e-01, + 2DIAGNOSTIC, 9, -4.121879023576e-01, 1.797693134862e+308, 9.5699e+00, 5.6663e-01, + 2DIAGNOSTIC, 10, -4.121877833415e-01, 2.797488054687e-05, 1.0119e+01, 5.4887e-01, + 2DIAGNOSTIC, 11, -4.121878181820e-01, 1.196915060968e-05, 1.0725e+01, 6.0659e-01, + 2DIAGNOSTIC, 12, -4.121878437876e-01, 2.540595656353e-06, 1.1279e+01, 5.5362e-01, + 2DIAGNOSTIC, 13, -4.121876077390e-01, 2.347358501825e-06, 1.1836e+01, 5.5727e-01, + 2DIAGNOSTIC, 14, -4.121876811313e-01, 2.195126239626e-06, 1.2505e+01, 6.6897e-01, + 2DIAGNOSTIC, 15, -4.121871767736e-01, 2.037619821441e-06, 1.3055e+01, 5.5023e-01, + 2DIAGNOSTIC, 16, -4.121871287282e-01, 1.901938829166e-06, 1.3667e+01, 6.1179e-01, + 2DIAGNOSTIC, 17, -4.121872590170e-01, 1.791139895846e-06, 1.4515e+01, 8.4771e-01, + 2DIAGNOSTIC, 18, -4.121871464166e-01, 1.690793063863e-06, 1.5068e+01, 5.5277e-01, + 2DIAGNOSTIC, 19, -4.121867731739e-01, 1.590285583573e-06, 1.5821e+01, 7.5352e-01, + 2DIAGNOSTIC, 20, -4.121866489199e-01, 1.499775555032e-06, 1.6434e+01, 6.1295e-01, + 2DIAGNOSTIC, 21, -4.121865312276e-01, 1.423526657648e-06, 1.6984e+01, 5.4945e-01, + 2DIAGNOSTIC, 22, -4.121864287073e-01, 1.360123305649e-06, 1.7529e+01, 5.4527e-01, + 2DIAGNOSTIC, 23, -4.121863516481e-01, 1.300678010671e-06, 1.8080e+01, 5.5074e-01, + 2DIAGNOSTIC, 24, -4.121864572510e-01, 1.259693841210e-06, 1.8716e+01, 6.3606e-01, + 2DIAGNOSTIC, 25, -4.121862552601e-01, 1.208666600166e-06, 1.9374e+01, 6.5776e-01, + 2DIAGNOSTIC, 26, -4.121860258216e-01, 1.160136257589e-06, 2.0071e+01, 6.9761e-01, + 2DIAGNOSTIC, 27, -4.121859088776e-01, 1.121638071436e-06, 2.0619e+01, 5.4821e-01, + 2DIAGNOSTIC, 28, -4.121856677920e-01, 1.082657757862e-06, 2.1177e+01, 5.5794e-01, + 2DIAGNOSTIC, 29, -4.121857320170e-01, 1.044100954695e-06, 2.1740e+01, 5.6228e-01, + 2DIAGNOSTIC, 30, -4.121858408446e-01, 1.012711287600e-06, 2.2386e+01, 6.4643e-01, + Elapsed time (stage 0): 2.2761e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.610061008593e-01, 1.797693134862e+308, 1.8471e-01, 1.8471e-01, + 2DIAGNOSTIC, 2, -6.628843573564e-01, 1.797693134862e+308, 1.8671e-01, 1.9970e-03, + 2DIAGNOSTIC, 3, -6.659991876836e-01, 1.797693134862e+308, 1.8872e-01, 2.0049e-03, + 2DIAGNOSTIC, 4, -6.705837327890e-01, 1.797693134862e+308, 1.9064e-01, 1.9212e-03, + 2DIAGNOSTIC, 5, -6.756017671525e-01, 1.797693134862e+308, 1.9307e-01, 2.4340e-03, + 2DIAGNOSTIC, 6, -6.782158163020e-01, 1.797693134862e+308, 1.9609e-01, 3.0241e-03, + 2DIAGNOSTIC, 7, -6.797524048190e-01, 1.797693134862e+308, 1.9919e-01, 3.0951e-03, + 2DIAGNOSTIC, 8, -6.800349012956e-01, 1.797693134862e+308, 2.0230e-01, 3.1111e-03, + 2DIAGNOSTIC, 9, -6.810645670279e-01, 1.797693134862e+308, 2.0480e-01, 2.4991e-03, + 2DIAGNOSTIC, 10, -6.817195480241e-01, 2.161601056464e-03, 2.0721e-01, 2.4140e-03, + 2DIAGNOSTIC, 11, -6.816782912835e-01, 1.619989942374e-03, 2.0980e-01, 2.5809e-03, + 2DIAGNOSTIC, 12, -6.819575287576e-01, 1.101628881309e-03, 2.1271e-01, 2.9099e-03, + 2DIAGNOSTIC, 13, -6.824092032797e-01, 6.786897750348e-04, 2.1563e-01, 2.9290e-03, + 2DIAGNOSTIC, 14, -6.824604547862e-01, 3.909969033288e-04, 2.1885e-01, 3.2179e-03, + 2DIAGNOSTIC, 15, -6.824878136162e-01, 2.462149436640e-04, 2.2242e-01, 3.5691e-03, + 2DIAGNOSTIC, 16, -6.825098164299e-01, 1.659739090414e-04, 2.2488e-01, 2.4550e-03, + 2DIAGNOSTIC, 17, -6.826774419230e-01, 1.224565496499e-04, 2.2747e-01, 2.5909e-03, + 2DIAGNOSTIC, 18, -6.830727580098e-01, 8.764877551561e-05, 2.3002e-01, 2.5511e-03, + 2DIAGNOSTIC, 19, -6.832204690040e-01, 7.397931281927e-05, 2.3295e-01, 2.9349e-03, + 2DIAGNOSTIC, 20, -6.837626160136e-01, 8.035752607718e-05, 2.3564e-01, 2.6860e-03, + 2DIAGNOSTIC, 21, -6.839331537974e-01, 8.116595849061e-05, 2.3803e-01, 2.3901e-03, + 2DIAGNOSTIC, 22, -6.840032584396e-01, 8.088369031232e-05, 2.4065e-01, 2.6209e-03, + 2DIAGNOSTIC, 23, -6.839022416699e-01, 7.958482627578e-05, 2.4323e-01, 2.5761e-03, + 2DIAGNOSTIC, 24, -6.835245123262e-01, 6.542360671821e-05, 2.4612e-01, 2.8899e-03, + 2DIAGNOSTIC, 25, -6.835353600431e-01, 4.716283980979e-05, 2.4872e-01, 2.6031e-03, + 2DIAGNOSTIC, 26, -6.835382649030e-01, 2.625171436122e-05, 2.5100e-01, 2.2831e-03, + 2DIAGNOSTIC, 27, -6.835441721426e-01, 7.102135598354e-06, 2.5354e-01, 2.5349e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.579712681563e-01, 1.797693134862e+308, 4.7490e-01, 2.2136e-01, + 2DIAGNOSTIC, 2, -5.590926678888e-01, 1.797693134862e+308, 4.8990e-01, 1.5005e-02, + 2DIAGNOSTIC, 3, -5.600813359101e-01, 1.797693134862e+308, 5.0476e-01, 1.4861e-02, + 2DIAGNOSTIC, 4, -5.608260886108e-01, 1.797693134862e+308, 5.1975e-01, 1.4982e-02, + 2DIAGNOSTIC, 5, -5.612835231707e-01, 1.797693134862e+308, 5.3416e-01, 1.4418e-02, + 2DIAGNOSTIC, 6, -5.617209891382e-01, 1.797693134862e+308, 5.4918e-01, 1.5011e-02, + 2DIAGNOSTIC, 7, -5.620998271585e-01, 1.797693134862e+308, 5.7020e-01, 2.1028e-02, + 2DIAGNOSTIC, 8, -5.623600970121e-01, 1.797693134862e+308, 5.8717e-01, 1.6971e-02, + 2DIAGNOSTIC, 9, -5.625281862040e-01, 1.797693134862e+308, 6.0195e-01, 1.4772e-02, + 2DIAGNOSTIC, 10, -5.626642475710e-01, 5.077698228063e-04, 6.1842e-01, 1.6470e-02, + 2DIAGNOSTIC, 11, -5.628761417661e-01, 3.619902477951e-04, 6.3756e-01, 1.9147e-02, + 2DIAGNOSTIC, 12, -5.629717242570e-01, 2.587702297900e-04, 6.5444e-01, 1.6872e-02, + 2DIAGNOSTIC, 13, -5.630458386890e-01, 1.892198777789e-04, 6.7113e-01, 1.6697e-02, + 2DIAGNOSTIC, 14, -5.630588308065e-01, 1.399337014061e-04, 6.9408e-01, 2.2946e-02, + 2DIAGNOSTIC, 15, -5.630509347823e-01, 9.965207847178e-05, 7.1043e-01, 1.6354e-02, + 2DIAGNOSTIC, 16, -5.630411950759e-01, 6.875127047744e-05, 7.2491e-01, 1.4477e-02, + 2DIAGNOSTIC, 17, -5.630325337252e-01, 4.619900191570e-05, 7.3965e-01, 1.4740e-02, + 2DIAGNOSTIC, 18, -5.630361452654e-01, 2.943914485407e-05, 7.5367e-01, 1.4022e-02, + 2DIAGNOSTIC, 19, -5.630273518925e-01, 1.610651527822e-05, 7.6777e-01, 1.4098e-02, + 2DIAGNOSTIC, 20, -5.630183034696e-01, 5.893177464057e-06, 7.8179e-01, 1.4023e-02, + 2DIAGNOSTIC, 21, -5.630223812030e-01, 1.424926450472e-06, 7.9769e-01, 1.5893e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.703211486296e-01, 1.797693134862e+308, 1.1800e+00, 3.8227e-01, + 2DIAGNOSTIC, 2, -4.713166491785e-01, 1.797693134862e+308, 1.2839e+00, 1.0390e-01, + 2DIAGNOSTIC, 3, -4.722810753430e-01, 1.797693134862e+308, 1.3872e+00, 1.0336e-01, + 2DIAGNOSTIC, 4, -4.728934725975e-01, 1.797693134862e+308, 1.4871e+00, 9.9868e-02, + 2DIAGNOSTIC, 5, -4.731517020418e-01, 1.797693134862e+308, 1.5868e+00, 9.9708e-02, + 2DIAGNOSTIC, 6, -4.733354582737e-01, 1.797693134862e+308, 1.6879e+00, 1.0106e-01, + 2DIAGNOSTIC, 7, -4.734921683218e-01, 1.797693134862e+308, 1.8168e+00, 1.2891e-01, + 2DIAGNOSTIC, 8, -4.735157096272e-01, 1.797693134862e+308, 1.9452e+00, 1.2841e-01, + 2DIAGNOSTIC, 9, -4.735285966309e-01, 1.797693134862e+308, 2.0601e+00, 1.1491e-01, + 2DIAGNOSTIC, 10, -4.735930499562e-01, 3.868020589874e-04, 2.1762e+00, 1.1611e-01, + 2DIAGNOSTIC, 11, -4.736812471965e-01, 2.298024705051e-04, 2.2779e+00, 1.0172e-01, + 2DIAGNOSTIC, 12, -4.736891464934e-01, 1.278707385842e-04, 2.3939e+00, 1.1600e-01, + 2DIAGNOSTIC, 13, -4.737003439596e-01, 7.494805374103e-05, 2.5090e+00, 1.1510e-01, + 2DIAGNOSTIC, 14, -4.737096590218e-01, 4.961051315708e-05, 2.6402e+00, 1.3115e-01, + 2DIAGNOSTIC, 15, -4.737133101291e-01, 3.364501616407e-05, 2.7545e+00, 1.1433e-01, + 2DIAGNOSTIC, 16, -4.737169984235e-01, 2.361613741395e-05, 2.8564e+00, 1.0187e-01, + 2DIAGNOSTIC, 17, -4.737274664323e-01, 1.868907133818e-05, 3.0115e+00, 1.5514e-01, + 2DIAGNOSTIC, 18, -4.737302103923e-01, 1.368050028693e-05, 3.1161e+00, 1.0458e-01, + 2DIAGNOSTIC, 19, -4.737331584635e-01, 8.572515366748e-06, 3.2185e+00, 1.0240e-01, + 2DIAGNOSTIC, 20, -4.737342516738e-01, 5.236001846293e-06, 3.3206e+00, 1.0211e-01, + 2DIAGNOSTIC, 21, -4.737349771404e-01, 4.420938686911e-06, 3.4817e+00, 1.6114e-01, + 2DIAGNOSTIC, 22, -4.737350048027e-01, 3.616780894493e-06, 3.8541e+00, 3.7232e-01, + 2DIAGNOSTIC, 23, -4.737350048013e-01, 2.965882819977e-06, 4.1997e+00, 3.4561e-01, + 2DIAGNOSTIC, 24, -4.737350048013e-01, 2.455549139427e-06, 4.3214e+00, 1.2175e-01, + 2DIAGNOSTIC, 25, -4.737350048013e-01, 1.968563539047e-06, 4.4396e+00, 1.1822e-01, + 2DIAGNOSTIC, 26, -4.737350048013e-01, 1.533434064345e-06, 4.5695e+00, 1.2988e-01, + 2DIAGNOSTIC, 27, -4.737350048013e-01, 1.333608279717e-06, 4.6861e+00, 1.1662e-01, + 2DIAGNOSTIC, 28, -4.737350048013e-01, 1.191050594498e-06, 4.8292e+00, 1.4306e-01, + 2DIAGNOSTIC, 29, -4.737350048013e-01, 1.113795691204e-06, 4.9456e+00, 1.1643e-01, + 2DIAGNOSTIC, 30, -4.737350048013e-01, 1.061641006564e-06, 5.0750e+00, 1.2932e-01, + 2DIAGNOSTIC, 31, -4.737350048013e-01, 1.026835183549e-06, 5.1772e+00, 1.0229e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.121580224312e-01, 1.797693134862e+308, 6.5174e+00, 1.3402e+00, + 2DIAGNOSTIC, 2, -4.124130198780e-01, 1.797693134862e+308, 7.1268e+00, 6.0938e-01, + 2DIAGNOSTIC, 3, -4.126168837767e-01, 1.797693134862e+308, 7.7470e+00, 6.2025e-01, + 2DIAGNOSTIC, 4, -4.127621020346e-01, 1.797693134862e+308, 8.4465e+00, 6.9948e-01, + 2DIAGNOSTIC, 5, -4.128402466263e-01, 1.797693134862e+308, 9.2120e+00, 7.6552e-01, + 2DIAGNOSTIC, 6, -4.128881756699e-01, 1.797693134862e+308, 9.8180e+00, 6.0600e-01, + 2DIAGNOSTIC, 7, -4.129403514598e-01, 1.797693134862e+308, 1.0726e+01, 9.0763e-01, + 2DIAGNOSTIC, 8, -4.129446659509e-01, 1.797693134862e+308, 1.1421e+01, 6.9568e-01, + 2DIAGNOSTIC, 9, -4.129484392001e-01, 1.797693134862e+308, 1.2264e+01, 8.4217e-01, + 2DIAGNOSTIC, 10, -4.129486452326e-01, 1.119527268247e-04, 1.3215e+01, 9.5172e-01, + 2DIAGNOSTIC, 11, -4.129486529911e-01, 6.634312265637e-05, 1.4064e+01, 8.4919e-01, + 2DIAGNOSTIC, 12, -4.129486539795e-01, 3.706041546778e-05, 1.4681e+01, 6.1662e-01, + 2DIAGNOSTIC, 13, -4.129486540457e-01, 1.983072020156e-05, 1.5522e+01, 8.4127e-01, + 2DIAGNOSTIC, 14, -4.129486542079e-01, 1.058206160325e-05, 1.6204e+01, 6.8121e-01, + 2DIAGNOSTIC, 15, -4.129485150585e-01, 5.356909318230e-06, 1.7661e+01, 1.4577e+00, + 2DIAGNOSTIC, 16, -4.129485150601e-01, 2.491351092399e-06, 1.9596e+01, 1.9348e+00, + 2DIAGNOSTIC, 17, -4.129485150601e-01, 2.026593126772e-06, 2.0211e+01, 6.1449e-01, + 2DIAGNOSTIC, 18, -4.129485150601e-01, 1.760068596396e-06, 2.0923e+01, 7.1195e-01, + 2DIAGNOSTIC, 19, -4.129485150601e-01, 1.658838024172e-06, 2.1609e+01, 6.8681e-01, + 2DIAGNOSTIC, 20, -4.129485150601e-01, 1.576366555824e-06, 2.2379e+01, 7.6981e-01, + 2DIAGNOSTIC, 21, -4.129485150601e-01, 1.503374599539e-06, 2.3170e+01, 7.9040e-01, + 2DIAGNOSTIC, 22, -4.129485150601e-01, 1.438075549261e-06, 2.3884e+01, 7.1414e-01, + 2DIAGNOSTIC, 23, -4.129485150601e-01, 1.379170247694e-06, 2.4575e+01, 6.9145e-01, + 2DIAGNOSTIC, 24, -4.129485150601e-01, 1.325684239765e-06, 2.5279e+01, 7.0410e-01, + 2DIAGNOSTIC, 25, -4.129485150601e-01, 1.272646428838e-06, 2.6070e+01, 7.9119e-01, + 2DIAGNOSTIC, 26, -4.129485150601e-01, 1.223689260046e-06, 2.6752e+01, 6.8142e-01, + 2DIAGNOSTIC, 27, -4.129485150601e-01, 1.178359206662e-06, 2.7443e+01, 6.9117e-01, + 2DIAGNOSTIC, 28, -4.129485150601e-01, 1.136267581137e-06, 2.8143e+01, 7.0027e-01, + 2DIAGNOSTIC, 29, -4.129485150601e-01, 1.097079317017e-06, 2.8917e+01, 7.7345e-01, + 2DIAGNOSTIC, 30, -4.129485150601e-01, 1.060504030738e-06, 2.9610e+01, 6.9372e-01, + 2DIAGNOSTIC, 31, -4.129485150601e-01, 1.026288813516e-06, 3.0314e+01, 7.0319e-01, + Elapsed time (stage 1): 3.0721e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.946317361814e-01, 1.797693134862e+308, 2.5763e-01, 2.5763e-01, + 1DIAGNOSTIC, 2, -9.071478166373e-01, 1.797693134862e+308, 3.5605e-01, 9.8424e-02, + 1DIAGNOSTIC, 3, -9.159746866431e-01, 1.797693134862e+308, 4.5472e-01, 9.8668e-02, + 1DIAGNOSTIC, 4, -9.224946585070e-01, 1.797693134862e+308, 5.5128e-01, 9.6562e-02, + 1DIAGNOSTIC, 5, -9.276246496722e-01, 1.797693134862e+308, 6.5106e-01, 9.9773e-02, + 1DIAGNOSTIC, 6, -9.312036010861e-01, 1.797693134862e+308, 7.5224e-01, 1.0118e-01, + 1DIAGNOSTIC, 7, -9.341781618610e-01, 1.797693134862e+308, 8.5473e-01, 1.0249e-01, + 1DIAGNOSTIC, 8, -9.365760889967e-01, 1.797693134862e+308, 9.5197e-01, 9.7241e-02, + 1DIAGNOSTIC, 9, -9.385317473697e-01, 1.797693134862e+308, 1.0507e+00, 9.8752e-02, + 1DIAGNOSTIC, 10, -9.400619077884e-01, 2.872122596366e-03, 1.1517e+00, 1.0094e-01, + 1DIAGNOSTIC, 11, -9.412478513367e-01, 1.985271984390e-03, 1.2538e+00, 1.0210e-01, + 1DIAGNOSTIC, 12, -9.422287731552e-01, 1.411644508217e-03, 1.3560e+00, 1.0222e-01, + 1DIAGNOSTIC, 13, -9.431214196216e-01, 1.026494660118e-03, 1.4544e+00, 9.8461e-02, + 1DIAGNOSTIC, 14, -9.438146474625e-01, 7.595486632009e-04, 1.5545e+00, 1.0004e-01, + 1DIAGNOSTIC, 15, -9.444243940565e-01, 5.752468897906e-04, 1.6524e+00, 9.7950e-02, + 1DIAGNOSTIC, 16, -9.449356914797e-01, 4.388298984342e-04, 1.7525e+00, 1.0006e-01, + 1DIAGNOSTIC, 17, -9.453670623172e-01, 3.388185119120e-04, 1.8525e+00, 9.9996e-02, + 1DIAGNOSTIC, 18, -9.457352976628e-01, 2.651476375714e-04, 1.9594e+00, 1.0688e-01, + 1DIAGNOSTIC, 19, -9.460465921196e-01, 2.107989805146e-04, 2.0670e+00, 1.0758e-01, + 1DIAGNOSTIC, 20, -9.463186136884e-01, 1.696316672198e-04, 2.1689e+00, 1.0197e-01, + 1DIAGNOSTIC, 21, -9.466121525171e-01, 1.379576491144e-04, 2.2723e+00, 1.0340e-01, + 1DIAGNOSTIC, 22, -9.468238006503e-01, 1.126826977735e-04, 2.3726e+00, 1.0022e-01, + 1DIAGNOSTIC, 23, -9.470088592115e-01, 9.330533365265e-05, 2.4689e+00, 9.6309e-02, + 1DIAGNOSTIC, 24, -9.471721326745e-01, 7.765263651513e-05, 2.5695e+00, 1.0060e-01, + 1DIAGNOSTIC, 25, -9.473172228078e-01, 6.514720097800e-05, 2.6681e+00, 9.8611e-02, + 1DIAGNOSTIC, 26, -9.474467729806e-01, 5.497972377377e-05, 2.7640e+00, 9.5908e-02, + 1DIAGNOSTIC, 27, -9.475611844295e-01, 4.655953745050e-05, 2.8605e+00, 9.6510e-02, + 1DIAGNOSTIC, 28, -9.476632272151e-01, 3.950561469697e-05, 2.9563e+00, 9.5805e-02, + 1DIAGNOSTIC, 29, -9.477539853686e-01, 3.347556146734e-05, 3.0545e+00, 9.8185e-02, + 1DIAGNOSTIC, 30, -9.478357716652e-01, 2.830241975108e-05, 3.1509e+00, 9.6418e-02, + 1DIAGNOSTIC, 31, -9.479097634494e-01, 2.443877554300e-05, 3.2579e+00, 1.0702e-01, + 1DIAGNOSTIC, 32, -9.479740714925e-01, 2.117838992000e-05, 3.3575e+00, 9.9626e-02, + 1DIAGNOSTIC, 33, -9.480314721648e-01, 1.839959468782e-05, 3.4545e+00, 9.6950e-02, + 1DIAGNOSTIC, 34, -9.480825508299e-01, 1.601464525296e-05, 3.5566e+00, 1.0213e-01, + 1DIAGNOSTIC, 35, -9.481291955732e-01, 1.397080994967e-05, 3.6543e+00, 9.7643e-02, + 1DIAGNOSTIC, 36, -9.481712504921e-01, 1.222291448850e-05, 3.7552e+00, 1.0091e-01, + 1DIAGNOSTIC, 37, -9.482086505469e-01, 1.071638726927e-05, 3.8596e+00, 1.0444e-01, + 1DIAGNOSTIC, 38, -9.482412079884e-01, 9.409096374761e-06, 3.9597e+00, 1.0004e-01, + 1DIAGNOSTIC, 39, -9.482707091227e-01, 8.273281376210e-06, 4.0613e+00, 1.0163e-01, + 1DIAGNOSTIC, 40, -9.482971233983e-01, 7.290549418854e-06, 4.1554e+00, 9.4094e-02, + 1DIAGNOSTIC, 41, -9.483209252605e-01, 6.448157779230e-06, 4.2531e+00, 9.7673e-02, + 1DIAGNOSTIC, 42, -9.483421775035e-01, 5.712495724071e-06, 4.3533e+00, 1.0021e-01, + 1DIAGNOSTIC, 43, -9.483614083728e-01, 5.069984498434e-06, 4.4499e+00, 9.6654e-02, + 1DIAGNOSTIC, 44, -9.483789848659e-01, 4.508571704264e-06, 4.5437e+00, 9.3777e-02, + 1DIAGNOSTIC, 45, -9.483947695795e-01, 4.024008080999e-06, 4.6431e+00, 9.9360e-02, + 1DIAGNOSTIC, 46, -9.484088628621e-01, 3.607348859586e-06, 4.7389e+00, 9.5829e-02, + 1DIAGNOSTIC, 47, -9.484217102530e-01, 3.248535102793e-06, 4.8377e+00, 9.8794e-02, + 1DIAGNOSTIC, 48, -9.484332350205e-01, 2.932430653267e-06, 4.9347e+00, 9.6995e-02, + 1DIAGNOSTIC, 49, -9.484429243589e-01, 2.650386121961e-06, 5.0304e+00, 9.5678e-02, + 1DIAGNOSTIC, 50, -9.484510965252e-01, 2.394267365105e-06, 5.1302e+00, 9.9830e-02, + 1DIAGNOSTIC, 51, -9.484582199773e-01, 2.160705976251e-06, 5.2265e+00, 9.6356e-02, + 1DIAGNOSTIC, 52, -9.484648899118e-01, 1.948990660149e-06, 5.3345e+00, 1.0792e-01, + 1DIAGNOSTIC, 53, -9.484707651549e-01, 1.758212449625e-06, 5.4322e+00, 9.7764e-02, + 1DIAGNOSTIC, 54, -9.484766656309e-01, 1.593165217119e-06, 5.5318e+00, 9.9590e-02, + 1DIAGNOSTIC, 55, -9.484817638484e-01, 1.451097725366e-06, 5.6376e+00, 1.0578e-01, + 1DIAGNOSTIC, 56, -9.484820492129e-01, 1.306760846833e-06, 5.7387e+00, 1.0108e-01, + 1DIAGNOSTIC, 57, -9.484862764027e-01, 1.186597766191e-06, 5.8438e+00, 1.0515e-01, + 1DIAGNOSTIC, 58, -9.484900457095e-01, 1.088651030001e-06, 5.9513e+00, 1.0752e-01, + 1DIAGNOSTIC, 59, -9.484934640876e-01, 1.008119520175e-06, 6.0537e+00, 1.0239e-01, + 1DIAGNOSTIC, 60, -9.484963213582e-01, 9.402185759538e-07, 6.1612e+00, 1.0750e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.012292172288e-01, 1.797693134862e+308, 7.0084e+00, 8.4718e-01, + 1DIAGNOSTIC, 2, -9.051861397988e-01, 1.797693134862e+308, 7.6812e+00, 6.7283e-01, + 1DIAGNOSTIC, 3, -9.087645510091e-01, 1.797693134862e+308, 8.3548e+00, 6.7355e-01, + 1DIAGNOSTIC, 4, -9.118752032032e-01, 1.797693134862e+308, 9.0257e+00, 6.7094e-01, + 1DIAGNOSTIC, 5, -9.143183465300e-01, 1.797693134862e+308, 9.6945e+00, 6.6874e-01, + 1DIAGNOSTIC, 6, -9.164508582570e-01, 1.797693134862e+308, 1.0369e+01, 6.7421e-01, + 1DIAGNOSTIC, 7, -9.181752471416e-01, 1.797693134862e+308, 1.1043e+01, 6.7411e-01, + 1DIAGNOSTIC, 8, -9.198006958569e-01, 1.797693134862e+308, 1.1712e+01, 6.6918e-01, + 1DIAGNOSTIC, 9, -9.211292299403e-01, 1.797693134862e+308, 1.2393e+01, 6.8099e-01, + 1DIAGNOSTIC, 10, -9.223077509281e-01, 1.435192904478e-03, 1.3083e+01, 6.9009e-01, + 1DIAGNOSTIC, 11, -9.233679903025e-01, 1.114444520191e-03, 1.3762e+01, 6.7903e-01, + 1DIAGNOSTIC, 12, -9.242062018751e-01, 8.703827518707e-04, 1.4431e+01, 6.6848e-01, + 1DIAGNOSTIC, 13, -9.249858994366e-01, 6.885167182635e-04, 1.5098e+01, 6.6727e-01, + 1DIAGNOSTIC, 14, -9.257065143697e-01, 5.544068310091e-04, 1.5785e+01, 6.8706e-01, + 1DIAGNOSTIC, 15, -9.263914341692e-01, 4.517041234175e-04, 1.6467e+01, 6.8208e-01, + 1DIAGNOSTIC, 16, -9.270483200271e-01, 3.740857883210e-04, 1.7153e+01, 6.8630e-01, + 1DIAGNOSTIC, 17, -9.276836981902e-01, 3.138078258183e-04, 1.7834e+01, 6.8119e-01, + 1DIAGNOSTIC, 18, -9.283075214803e-01, 2.696889586904e-04, 1.8513e+01, 6.7819e-01, + 1DIAGNOSTIC, 19, -9.289148468904e-01, 2.365213159469e-04, 1.9187e+01, 6.7402e-01, + 1DIAGNOSTIC, 20, -9.295060630835e-01, 2.118446149791e-04, 1.9846e+01, 6.5899e-01, + 1DIAGNOSTIC, 21, -9.300728654635e-01, 1.936051905309e-04, 2.0528e+01, 6.8205e-01, + 1DIAGNOSTIC, 22, -9.306233378750e-01, 1.783428569670e-04, 2.1215e+01, 6.8696e-01, + 1DIAGNOSTIC, 23, -9.311363726754e-01, 1.649906177863e-04, 2.1896e+01, 6.8165e-01, + 1DIAGNOSTIC, 24, -9.316095180524e-01, 1.525698711202e-04, 2.2573e+01, 6.7713e-01, + 1DIAGNOSTIC, 25, -9.320465960876e-01, 1.406130985325e-04, 2.3261e+01, 6.8743e-01, + 1DIAGNOSTIC, 26, -9.324500543506e-01, 1.288892957015e-04, 2.3944e+01, 6.8291e-01, + 1DIAGNOSTIC, 27, -9.328258956366e-01, 1.174051955611e-04, 2.4620e+01, 6.7649e-01, + 1DIAGNOSTIC, 28, -9.331628087690e-01, 1.062144650174e-04, 2.5297e+01, 6.7652e-01, + 1DIAGNOSTIC, 29, -9.334661808601e-01, 9.542425364121e-05, 2.5967e+01, 6.7001e-01, + 1DIAGNOSTIC, 30, -9.337366098694e-01, 8.517031235757e-05, 2.6627e+01, 6.6009e-01, + 1DIAGNOSTIC, 31, -9.339861639912e-01, 7.561848367024e-05, 2.7312e+01, 6.8532e-01, + 1DIAGNOSTIC, 32, -9.342135956408e-01, 6.697906079801e-05, 2.7997e+01, 6.8489e-01, + 1DIAGNOSTIC, 33, -9.344206578967e-01, 5.923155653003e-05, 2.8677e+01, 6.8028e-01, + 1DIAGNOSTIC, 34, -9.346082753230e-01, 5.231044706638e-05, 2.9373e+01, 6.9572e-01, + 1DIAGNOSTIC, 35, -9.347778478388e-01, 4.616621993558e-05, 3.0062e+01, 6.8938e-01, + 1DIAGNOSTIC, 36, -9.349315887917e-01, 4.075509549703e-05, 3.0728e+01, 6.6597e-01, + 1DIAGNOSTIC, 37, -9.350712131874e-01, 3.606785759286e-05, 3.1405e+01, 6.7658e-01, + 1DIAGNOSTIC, 38, -9.351983454403e-01, 3.197738438494e-05, 3.2081e+01, 6.7582e-01, + 1DIAGNOSTIC, 39, -9.353196568157e-01, 2.843208324814e-05, 3.2757e+01, 6.7601e-01, + 1DIAGNOSTIC, 40, -9.354296378104e-01, 2.531218419323e-05, 3.3440e+01, 6.8290e-01, + 1DIAGNOSTIC, 41, -9.355387381756e-01, 2.265667892837e-05, 3.4116e+01, 6.7666e-01, + 1DIAGNOSTIC, 42, -9.356330396807e-01, 2.035815492932e-05, 3.4787e+01, 6.7102e-01, + 1DIAGNOSTIC, 43, -9.357191010686e-01, 1.835944218235e-05, 3.5467e+01, 6.7912e-01, + 1DIAGNOSTIC, 44, -9.358001769893e-01, 1.661748669462e-05, 3.6144e+01, 6.7740e-01, + 1DIAGNOSTIC, 45, -9.358754389676e-01, 1.507963054087e-05, 3.6829e+01, 6.8496e-01, + 1DIAGNOSTIC, 46, -9.359456761945e-01, 1.370673246212e-05, 3.7511e+01, 6.8174e-01, + 1DIAGNOSTIC, 47, -9.360111477439e-01, 1.246741156367e-05, 3.8190e+01, 6.7894e-01, + 1DIAGNOSTIC, 48, -9.360717537791e-01, 1.133441367645e-05, 3.8868e+01, 6.7852e-01, + 1DIAGNOSTIC, 49, -9.361267629573e-01, 1.031462823754e-05, 3.9555e+01, 6.8672e-01, + 1DIAGNOSTIC, 50, -9.361810698401e-01, 9.402169710144e-06, 4.0233e+01, 6.7853e-01, + 1DIAGNOSTIC, 51, -9.362334967111e-01, 8.643117652484e-06, 4.0913e+01, 6.7977e-01, + 1DIAGNOSTIC, 52, -9.362820702035e-01, 7.974702172370e-06, 4.1593e+01, 6.7988e-01, + 1DIAGNOSTIC, 53, -9.363267907755e-01, 7.371111557321e-06, 4.2290e+01, 6.9692e-01, + 1DIAGNOSTIC, 54, -9.363597120453e-01, 6.778042247413e-06, 4.2971e+01, 6.8056e-01, + 1DIAGNOSTIC, 55, -9.363981833961e-01, 6.238722826613e-06, 4.3652e+01, 6.8178e-01, + 1DIAGNOSTIC, 56, -9.364263019974e-01, 5.704381758107e-06, 4.4328e+01, 6.7580e-01, + 1DIAGNOSTIC, 57, -9.364609965619e-01, 5.226728436121e-06, 4.4999e+01, 6.7113e-01, + 1DIAGNOSTIC, 58, -9.364931477642e-01, 4.800106289726e-06, 4.5663e+01, 6.6342e-01, + 1DIAGNOSTIC, 59, -9.365237146826e-01, 4.417564906500e-06, 4.6358e+01, 6.9534e-01, + 1DIAGNOSTIC, 60, -9.365520364771e-01, 4.091070928199e-06, 4.7032e+01, 6.7408e-01, + 1DIAGNOSTIC, 61, -9.365792407344e-01, 3.827131679061e-06, 4.7708e+01, 6.7607e-01, + 1DIAGNOSTIC, 62, -9.366045994036e-01, 3.613394725530e-06, 4.8389e+01, 6.8047e-01, + 1DIAGNOSTIC, 63, -9.366292600883e-01, 3.441252967321e-06, 4.9066e+01, 6.7691e-01, + 1DIAGNOSTIC, 64, -9.366520717694e-01, 3.253886071534e-06, 4.9746e+01, 6.8087e-01, + 1DIAGNOSTIC, 65, -9.366765484302e-01, 3.100604325356e-06, 5.0418e+01, 6.7167e-01, + 1DIAGNOSTIC, 66, -9.366964997424e-01, 2.919560526733e-06, 5.1098e+01, 6.8019e-01, + 1DIAGNOSTIC, 67, -9.367162735579e-01, 2.754853635628e-06, 5.1790e+01, 6.9147e-01, + 1DIAGNOSTIC, 68, -9.367347927053e-01, 2.600366126659e-06, 5.2473e+01, 6.8373e-01, + 1DIAGNOSTIC, 69, -9.367525839926e-01, 2.456418352391e-06, 5.3157e+01, 6.8348e-01, + 1DIAGNOSTIC, 70, -9.367692616514e-01, 2.318117035686e-06, 5.3825e+01, 6.6851e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.774666703591e-01, 1.797693134862e+308, 5.9467e+01, 5.6414e+00, + 1DIAGNOSTIC, 2, -8.804389055951e-01, 1.797693134862e+308, 6.4840e+01, 5.3728e+00, + 1DIAGNOSTIC, 3, -8.834365550607e-01, 1.797693134862e+308, 7.0306e+01, 5.4659e+00, + 1DIAGNOSTIC, 4, -8.862390658973e-01, 1.797693134862e+308, 7.5707e+01, 5.4011e+00, + 1DIAGNOSTIC, 5, -8.889114242421e-01, 1.797693134862e+308, 8.1115e+01, 5.4085e+00, + 1DIAGNOSTIC, 6, -8.915881669870e-01, 1.797693134862e+308, 8.6526e+01, 5.4112e+00, + 1DIAGNOSTIC, 7, -8.940073094908e-01, 1.797693134862e+308, 9.1917e+01, 5.3909e+00, + 1DIAGNOSTIC, 8, -8.961139542580e-01, 1.797693134862e+308, 9.7277e+01, 5.3595e+00, + 1DIAGNOSTIC, 9, -8.979268353638e-01, 1.797693134862e+308, 1.0269e+02, 5.4095e+00, + 1DIAGNOSTIC, 10, -8.993239479126e-01, 1.604026409577e-03, 1.0807e+02, 5.3868e+00, + 1DIAGNOSTIC, 11, -9.004070714073e-01, 1.332163899600e-03, 1.1345e+02, 5.3798e+00, + 1DIAGNOSTIC, 12, -9.012491409257e-01, 1.086878479683e-03, 1.1882e+02, 5.3693e+00, + 1DIAGNOSTIC, 13, -9.019290770817e-01, 8.708838393543e-04, 1.2426e+02, 5.4371e+00, + 1DIAGNOSTIC, 14, -9.024829467786e-01, 6.826014769297e-04, 1.2964e+02, 5.3801e+00, + 1DIAGNOSTIC, 15, -9.026973531695e-01, 5.179271865459e-04, 1.3507e+02, 5.4352e+00, + 1DIAGNOSTIC, 16, -9.029903446414e-01, 3.851654644389e-04, 1.4047e+02, 5.3952e+00, + 1DIAGNOSTIC, 17, -9.031373337872e-01, 2.802364902756e-04, 1.4592e+02, 5.4475e+00, + 1DIAGNOSTIC, 18, -9.032635629987e-01, 2.001974576002e-04, 1.5133e+02, 5.4122e+00, + 1DIAGNOSTIC, 19, -9.033877654112e-01, 1.422442203280e-04, 1.5678e+02, 5.4541e+00, + 1DIAGNOSTIC, 20, -9.035111627452e-01, 1.009346196224e-04, 1.6223e+02, 5.4481e+00, + 1DIAGNOSTIC, 21, -9.036319230060e-01, 7.231764292481e-05, 1.6773e+02, 5.4974e+00, + 1DIAGNOSTIC, 22, -9.037519635451e-01, 5.338341765340e-05, 1.7315e+02, 5.4239e+00, + 1DIAGNOSTIC, 23, -9.038710088495e-01, 4.209700147182e-05, 1.7862e+02, 5.4680e+00, + 1DIAGNOSTIC, 24, -9.039879306505e-01, 3.675317350114e-05, 1.8405e+02, 5.4329e+00, + 1DIAGNOSTIC, 25, -9.041038053552e-01, 3.260262911384e-05, 1.8948e+02, 5.4281e+00, + 1DIAGNOSTIC, 26, -9.042226884602e-01, 3.079920827877e-05, 1.9489e+02, 5.4080e+00, + 1DIAGNOSTIC, 27, -9.043421714777e-01, 2.943233171144e-05, 2.0033e+02, 5.4354e+00, + 1DIAGNOSTIC, 28, -9.044610329945e-01, 2.823432498920e-05, 2.0575e+02, 5.4266e+00, + 1DIAGNOSTIC, 29, -9.045767904010e-01, 2.714592143024e-05, 2.1115e+02, 5.3928e+00, + 1DIAGNOSTIC, 30, -9.046985503935e-01, 2.622277519299e-05, 2.1658e+02, 5.4333e+00, + 1DIAGNOSTIC, 31, -9.048166918192e-01, 2.538318285204e-05, 2.2200e+02, 5.4194e+00, + 1DIAGNOSTIC, 32, -9.049376632455e-01, 2.463991331092e-05, 2.2740e+02, 5.3989e+00, + 1DIAGNOSTIC, 33, -9.050635113041e-01, 2.401698589295e-05, 2.3284e+02, 5.4439e+00, + 1DIAGNOSTIC, 34, -9.051921202828e-01, 2.349693551258e-05, 2.3826e+02, 5.4161e+00, + 1DIAGNOSTIC, 35, -9.053214939075e-01, 2.304897323543e-05, 2.4370e+02, 5.4431e+00, + 1DIAGNOSTIC, 36, -9.054521628791e-01, 2.268356952733e-05, 2.4915e+02, 5.4497e+00, + 1DIAGNOSTIC, 37, -9.055825016810e-01, 2.237014006707e-05, 2.5456e+02, 5.4065e+00, + 1DIAGNOSTIC, 38, -9.057137783118e-01, 2.207860577176e-05, 2.5998e+02, 5.4208e+00, + 1DIAGNOSTIC, 39, -9.058440020629e-01, 2.174297230846e-05, 2.6540e+02, 5.4222e+00, + 1DIAGNOSTIC, 40, -9.059745482088e-01, 2.139595879565e-05, 2.7082e+02, 5.4248e+00, + 1DIAGNOSTIC, 41, -9.061081111205e-01, 2.101464957511e-05, 2.7625e+02, 5.4238e+00, + 1DIAGNOSTIC, 42, -9.062428277954e-01, 2.061625141908e-05, 2.8169e+02, 5.4443e+00, + 1DIAGNOSTIC, 43, -9.063777341738e-01, 2.022874444978e-05, 2.8711e+02, 5.4143e+00, + 1DIAGNOSTIC, 44, -9.065114205834e-01, 1.985379686170e-05, 2.9256e+02, 5.4539e+00, + 1DIAGNOSTIC, 45, -9.066455411899e-01, 1.949072328167e-05, 2.9800e+02, 5.4366e+00, + 1DIAGNOSTIC, 46, -9.067799928991e-01, 1.914164616597e-05, 3.0347e+02, 5.4771e+00, + 1DIAGNOSTIC, 47, -9.069137479466e-01, 1.879079190818e-05, 3.0892e+02, 5.4449e+00, + 1DIAGNOSTIC, 48, -9.070464879199e-01, 1.843286482111e-05, 3.1435e+02, 5.4318e+00, + 1DIAGNOSTIC, 49, -9.071787181632e-01, 1.805539293540e-05, 3.1978e+02, 5.4310e+00, + 1DIAGNOSTIC, 50, -9.073101345088e-01, 1.765584909994e-05, 3.2520e+02, 5.4195e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.734066532571e-01, 1.797693134862e+308, 3.6960e+02, 4.4395e+01, + 1DIAGNOSTIC, 2, -8.745468885170e-01, 1.797693134862e+308, 4.1366e+02, 4.4066e+01, + 1DIAGNOSTIC, 3, -8.767333644754e-01, 1.797693134862e+308, 4.5796e+02, 4.4302e+01, + 1DIAGNOSTIC, 4, -8.791812998630e-01, 1.797693134862e+308, 5.0226e+02, 4.4294e+01, + 1DIAGNOSTIC, 5, -8.814606467145e-01, 1.797693134862e+308, 5.4660e+02, 4.4342e+01, + 1DIAGNOSTIC, 6, -8.836233453387e-01, 1.797693134862e+308, 5.9077e+02, 4.4168e+01, + 1DIAGNOSTIC, 7, -8.852070650099e-01, 1.797693134862e+308, 6.3519e+02, 4.4427e+01, + 1DIAGNOSTIC, 8, -8.867177433280e-01, 1.797693134862e+308, 6.7931e+02, 4.4120e+01, + 1DIAGNOSTIC, 9, -8.879289151708e-01, 1.797693134862e+308, 7.2380e+02, 4.4488e+01, + 1DIAGNOSTIC, 10, -8.890981258440e-01, 1.213866430872e-03, 7.6805e+02, 4.4252e+01, + 1DIAGNOSTIC, 11, -8.902570843724e-01, 1.038360138439e-03, 8.1306e+02, 4.5011e+01, + 1DIAGNOSTIC, 12, -8.913523082324e-01, 8.584586692734e-04, 8.5719e+02, 4.4125e+01, + 1DIAGNOSTIC, 13, -8.923039578764e-01, 7.057767220264e-04, 9.0152e+02, 4.4327e+01, + 1DIAGNOSTIC, 14, -8.931534437174e-01, 5.859952164093e-04, 9.4570e+02, 4.4186e+01, + 1DIAGNOSTIC, 15, -8.939239355345e-01, 4.934269344388e-04, 9.9003e+02, 4.4324e+01, + 1DIAGNOSTIC, 16, -8.946380110214e-01, 4.245400218405e-04, 1.0346e+03, 4.4576e+01, + 1DIAGNOSTIC, 17, -8.950990803351e-01, 3.628841107798e-04, 1.0795e+03, 4.4874e+01, + 1DIAGNOSTIC, 18, -8.955456576118e-01, 3.093434619989e-04, 1.1241e+03, 4.4581e+01, + 1DIAGNOSTIC, 19, -8.959920464816e-01, 2.606347043345e-04, 1.1689e+03, 4.4868e+01, + 1DIAGNOSTIC, 20, -8.964326190902e-01, 2.181796839139e-04, 1.2138e+03, 4.4851e+01, + Elapsed time (stage 2): 1214 + + +Total elapsed time: 1268 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:00 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:00 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:02 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:07 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:10 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:10 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 14912 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:11 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:14 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:15 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 14956 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:15 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:18 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:18 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15019 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:18 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15024 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:18 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:22 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:24 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:24 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:25 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:26 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:28 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:28 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:29 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:30 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:32 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC005 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:43 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:54 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC005 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:54 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC005 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:55 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC005 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:55 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15628 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:57 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15661 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:58 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:58 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC005_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 70.633 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/logs/proc_func_18-03-2024-19043.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:44:04 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC005 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/QC/sub-PNC005_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC005* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 70.667 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC005_ses-03 +========================reprocessing without filter=================== +sub-PNC006_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC006 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC006 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC006 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC006 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:44:09 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:44:09 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:46:22 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:48:35 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:48:49 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.54 (mm) at sub-brick 16 +++ Max delta displ in automask = 0.13 (mm) at sub-brick 15 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:01:59 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:02:17 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:04:34 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:06:57 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz is 44.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:09:25 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -1.108 -2.069 2.210 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 77.2 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -1.326 -2.600 4.232 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.4 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:14:28 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:15:02 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55716472d6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [105.102, 54.3661, -116.053] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5571645a4730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x557164744320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x557164730fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [79.9958, 113.5, -129.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557164736e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x557164f41230 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x557164f3f5c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [105.102, 54.3661, -116.053] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5571647333f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x557165b7b450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x557164f3dda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [79.9958, 113.5, -129.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55716473a360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x557166375780 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.333022981481e-01, 1.797693134862e+308, 4.3877e-02, 4.3877e-02, + 2DIAGNOSTIC, 2, -5.357407242847e-01, 1.797693134862e+308, 4.5150e-02, 1.2729e-03, + 2DIAGNOSTIC, 3, -5.392519648163e-01, 1.797693134862e+308, 4.6467e-02, 1.3170e-03, + 2DIAGNOSTIC, 4, -5.413059654357e-01, 1.797693134862e+308, 4.7742e-02, 1.2751e-03, + 2DIAGNOSTIC, 5, -5.427188800257e-01, 1.797693134862e+308, 4.9018e-02, 1.2760e-03, + 2DIAGNOSTIC, 6, -5.440067890388e-01, 1.797693134862e+308, 5.0267e-02, 1.2491e-03, + 2DIAGNOSTIC, 7, -5.450988265076e-01, 1.797693134862e+308, 5.1542e-02, 1.2748e-03, + 2DIAGNOSTIC, 8, -5.503154171733e-01, 1.797693134862e+308, 5.3326e-02, 1.7838e-03, + 2DIAGNOSTIC, 9, -5.573898811529e-01, 1.797693134862e+308, 5.4853e-02, 1.5271e-03, + 2DIAGNOSTIC, 10, -5.594162030043e-01, 2.860521657984e-03, 5.6460e-02, 1.6072e-03, + 2DIAGNOSTIC, 11, -5.648175532965e-01, 2.919600346917e-03, 5.7978e-02, 1.5180e-03, + 2DIAGNOSTIC, 12, -5.662107352552e-01, 2.867895922774e-03, 5.9758e-02, 1.7800e-03, + 2DIAGNOSTIC, 13, -5.719008668082e-01, 2.926725728404e-03, 6.1560e-02, 1.8020e-03, + 2DIAGNOSTIC, 14, -6.102686592397e-01, 4.170893629348e-03, 6.3102e-02, 1.5421e-03, + 2DIAGNOSTIC, 15, -6.223082427345e-01, 5.269919836440e-03, 6.5148e-02, 2.0461e-03, + 2DIAGNOSTIC, 16, -6.119511436537e-01, 5.465522995418e-03, 6.7617e-02, 2.4691e-03, + 2DIAGNOSTIC, 17, -6.064160460022e-01, 5.036018509499e-03, 6.9856e-02, 2.2390e-03, + 2DIAGNOSTIC, 18, -6.076325330268e-01, 4.369998874366e-03, 7.1605e-02, 1.7490e-03, + 2DIAGNOSTIC, 19, -6.091673258557e-01, 3.576140872294e-03, 7.3176e-02, 1.5712e-03, + 2DIAGNOSTIC, 20, -6.114410518929e-01, 2.630570188123e-03, 7.4737e-02, 1.5609e-03, + 2DIAGNOSTIC, 21, -6.147615700730e-01, 1.760656795609e-03, 7.6250e-02, 1.5130e-03, + 2DIAGNOSTIC, 22, -6.175905257187e-01, 9.191390026890e-04, 7.7791e-02, 1.5411e-03, + 2DIAGNOSTIC, 23, -6.171229563637e-01, 1.578205061904e-04, 7.9411e-02, 1.6198e-03, + 2DIAGNOSTIC, 24, -6.208253107705e-01, 2.996057697920e-04, 8.1699e-02, 2.2879e-03, + 2DIAGNOSTIC, 25, -6.223663482402e-01, 6.695731805208e-04, 8.3255e-02, 1.5559e-03, + 2DIAGNOSTIC, 26, -6.206193985066e-01, 7.215898567991e-04, 8.4821e-02, 1.5659e-03, + 2DIAGNOSTIC, 27, -6.222806141154e-01, 6.335645060413e-04, 8.7297e-02, 2.4760e-03, + 2DIAGNOSTIC, 28, -6.225653571000e-01, 5.183564862410e-04, 8.8815e-02, 1.5180e-03, + 2DIAGNOSTIC, 29, -6.254368823421e-01, 4.353505887472e-04, 9.0320e-02, 1.5049e-03, + 2DIAGNOSTIC, 30, -6.264444471800e-01, 3.676370746311e-04, 9.1839e-02, 1.5190e-03, + 2DIAGNOSTIC, 31, -6.282977752371e-01, 3.504301604603e-04, 9.3629e-02, 1.7900e-03, + 2DIAGNOSTIC, 32, -6.340019470144e-01, 4.305372381891e-04, 9.5170e-02, 1.5409e-03, + 2DIAGNOSTIC, 33, -6.424691419396e-01, 5.771002186308e-04, 9.6952e-02, 1.7822e-03, + 2DIAGNOSTIC, 34, -6.540000440442e-01, 8.704293297761e-04, 9.8728e-02, 1.7760e-03, + 2DIAGNOSTIC, 35, -6.478132226202e-01, 9.986756593452e-04, 1.0099e-01, 2.2619e-03, + 2DIAGNOSTIC, 36, -6.506483054378e-01, 1.044079199353e-03, 1.0411e-01, 3.1180e-03, + 2DIAGNOSTIC, 37, -6.507946409019e-01, 1.010199729006e-03, 1.0561e-01, 1.5049e-03, + 2DIAGNOSTIC, 38, -6.519727317171e-01, 8.965680445682e-04, 1.0711e-01, 1.4942e-03, + 2DIAGNOSTIC, 39, -6.540606832603e-01, 7.628742125262e-04, 1.0913e-01, 2.0280e-03, + 2DIAGNOSTIC, 40, -6.579713807828e-01, 6.236956048925e-04, 1.1174e-01, 2.6088e-03, + 2DIAGNOSTIC, 41, -6.651930312816e-01, 5.369599975264e-04, 1.1430e-01, 2.5520e-03, + 2DIAGNOSTIC, 42, -6.727363361417e-01, 5.476211915537e-04, 1.1680e-01, 2.5029e-03, + 2DIAGNOSTIC, 43, -6.778089757636e-01, 6.478839849334e-04, 1.1907e-01, 2.2759e-03, + 2DIAGNOSTIC, 44, -6.792903171208e-01, 8.216643945678e-04, 1.2041e-01, 1.3340e-03, + 2DIAGNOSTIC, 45, -6.807097673547e-01, 8.590048164669e-04, 1.2200e-01, 1.5919e-03, + 2DIAGNOSTIC, 46, -6.856633244660e-01, 8.904316478742e-04, 1.2405e-01, 2.0471e-03, + 2DIAGNOSTIC, 47, -6.862251357124e-01, 8.402134838205e-04, 1.2565e-01, 1.5988e-03, + 2DIAGNOSTIC, 48, -6.863113237888e-01, 7.247852129053e-04, 1.2706e-01, 1.4119e-03, + 2DIAGNOSTIC, 49, -6.867788529963e-01, 5.706525232272e-04, 1.2867e-01, 1.6150e-03, + 2DIAGNOSTIC, 50, -6.864630154952e-01, 4.011252138428e-04, 1.3007e-01, 1.4000e-03, + 2DIAGNOSTIC, 51, -6.864393606370e-01, 2.635196328078e-04, 1.3188e-01, 1.8110e-03, + 2DIAGNOSTIC, 52, -6.863733281795e-01, 1.712801578451e-04, 1.3348e-01, 1.5931e-03, + 2DIAGNOSTIC, 53, -6.864237244777e-01, 1.110906354551e-04, 1.3528e-01, 1.8032e-03, + 2DIAGNOSTIC, 54, -6.853707565365e-01, 4.654902545280e-05, 1.3686e-01, 1.5762e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.461653528604e-01, 1.797693134862e+308, 1.8600e-01, 4.9139e-02, + 2DIAGNOSTIC, 2, -3.460906214217e-01, 1.797693134862e+308, 1.8882e-01, 2.8260e-03, + 2DIAGNOSTIC, 3, -3.475166469894e-01, 1.797693134862e+308, 1.9210e-01, 3.2749e-03, + 2DIAGNOSTIC, 4, -3.483850620525e-01, 1.797693134862e+308, 1.9441e-01, 2.3181e-03, + 2DIAGNOSTIC, 5, -3.490433922922e-01, 1.797693134862e+308, 1.9672e-01, 2.3100e-03, + 2DIAGNOSTIC, 6, -3.506735413959e-01, 1.797693134862e+308, 1.9936e-01, 2.6400e-03, + 2DIAGNOSTIC, 7, -3.542261129750e-01, 1.797693134862e+308, 2.0184e-01, 2.4750e-03, + 2DIAGNOSTIC, 8, -3.598033376577e-01, 1.797693134862e+308, 2.0510e-01, 3.2609e-03, + 2DIAGNOSTIC, 9, -3.616299314182e-01, 1.797693134862e+308, 2.0739e-01, 2.2919e-03, + 2DIAGNOSTIC, 10, -3.658399368660e-01, 3.616649194148e-03, 2.1157e-01, 4.1790e-03, + 2DIAGNOSTIC, 11, -3.699694846017e-01, 3.996733682666e-03, 2.1408e-01, 2.5082e-03, + 2DIAGNOSTIC, 12, -3.716403187972e-01, 4.049200487458e-03, 2.1657e-01, 2.4869e-03, + 2DIAGNOSTIC, 13, -3.732026992418e-01, 3.908682487149e-03, 2.1906e-01, 2.4960e-03, + 2DIAGNOSTIC, 14, -3.747878804016e-01, 3.575175247444e-03, 2.2171e-01, 2.6510e-03, + 2DIAGNOSTIC, 15, -3.770408741460e-01, 3.114624580093e-03, 2.2457e-01, 2.8520e-03, + 2DIAGNOSTIC, 16, -3.833085303894e-01, 2.809687843462e-03, 2.2838e-01, 3.8171e-03, + 2DIAGNOSTIC, 17, -3.838056983688e-01, 2.460402938454e-03, 2.3091e-01, 2.5249e-03, + 2DIAGNOSTIC, 18, -3.841794275441e-01, 2.189339807306e-03, 2.3372e-01, 2.8169e-03, + 2DIAGNOSTIC, 19, -3.843292595593e-01, 1.827732926287e-03, 2.3713e-01, 3.4039e-03, + 2DIAGNOSTIC, 20, -3.845512418229e-01, 1.501891056388e-03, 2.3959e-01, 2.4610e-03, + 2DIAGNOSTIC, 21, -3.846638627209e-01, 1.221378470274e-03, 2.4214e-01, 2.5461e-03, + 2DIAGNOSTIC, 22, -3.848264860198e-01, 9.176293176730e-04, 2.4503e-01, 2.8899e-03, + 2DIAGNOSTIC, 23, -3.851210855283e-01, 6.207597681379e-04, 2.4785e-01, 2.8260e-03, + 2DIAGNOSTIC, 24, -3.851890635306e-01, 3.451283548110e-04, 2.5089e-01, 3.0360e-03, + 2DIAGNOSTIC, 25, -3.852532612475e-01, 1.263450169660e-04, 2.5368e-01, 2.7931e-03, + 2DIAGNOSTIC, 26, -3.853015139710e-01, 9.959981336657e-05, 2.5618e-01, 2.5001e-03, + 2DIAGNOSTIC, 27, -3.856924739692e-01, 9.061572326329e-05, 2.5905e-01, 2.8739e-03, + 2DIAGNOSTIC, 28, -3.864857457968e-01, 1.053530554570e-04, 2.6280e-01, 3.7482e-03, + 2DIAGNOSTIC, 29, -3.865043571334e-01, 1.130673817766e-04, 2.6525e-01, 2.4471e-03, + 2DIAGNOSTIC, 30, -3.863379003171e-01, 1.115357286139e-04, 2.6809e-01, 2.8441e-03, + 2DIAGNOSTIC, 31, -3.864099508865e-01, 1.045838690611e-04, 2.7057e-01, 2.4791e-03, + 2DIAGNOSTIC, 32, -3.863581791167e-01, 9.044314829652e-05, 2.7341e-01, 2.8338e-03, + 2DIAGNOSTIC, 33, -3.865135527886e-01, 7.872564258386e-05, 2.7594e-01, 2.5289e-03, + 2DIAGNOSTIC, 34, -3.867013421861e-01, 6.603091586226e-05, 2.7939e-01, 3.4571e-03, + 2DIAGNOSTIC, 35, -3.871577878539e-01, 5.951055372516e-05, 2.8247e-01, 3.0739e-03, + 2DIAGNOSTIC, 36, -3.878468280851e-01, 6.311649841884e-05, 2.8571e-01, 3.2439e-03, + 2DIAGNOSTIC, 37, -3.882397373104e-01, 7.590951189892e-05, 2.8860e-01, 2.8918e-03, + 2DIAGNOSTIC, 38, -3.885082410569e-01, 1.020141886257e-04, 2.9145e-01, 2.8450e-03, + 2DIAGNOSTIC, 39, -3.890602985360e-01, 1.283107612986e-04, 2.9397e-01, 2.5260e-03, + 2DIAGNOSTIC, 40, -3.900370807414e-01, 1.560689697354e-04, 2.9681e-01, 2.8322e-03, + 2DIAGNOSTIC, 41, -3.907299967927e-01, 1.812308061352e-04, 3.0002e-01, 3.2182e-03, + 2DIAGNOSTIC, 42, -3.913834073772e-01, 1.986583968627e-04, 3.0256e-01, 2.5330e-03, + 2DIAGNOSTIC, 43, -3.922880858180e-01, 2.150716788896e-04, 3.0512e-01, 2.5599e-03, + 2DIAGNOSTIC, 44, -3.950275822175e-01, 2.599442303703e-04, 3.0802e-01, 2.9011e-03, + 2DIAGNOSTIC, 45, -3.987342367902e-01, 3.459578075111e-04, 3.1156e-01, 3.5472e-03, + 2DIAGNOSTIC, 46, -3.991686745339e-01, 4.121366418117e-04, 3.1404e-01, 2.4781e-03, + 2DIAGNOSTIC, 47, -4.018275992127e-01, 4.858145065171e-04, 3.1655e-01, 2.5101e-03, + 2DIAGNOSTIC, 48, -4.031763608646e-01, 5.345400962191e-04, 3.2004e-01, 3.4852e-03, + 2DIAGNOSTIC, 49, -4.045991353098e-01, 5.590628308779e-04, 3.2284e-01, 2.8040e-03, + 2DIAGNOSTIC, 50, -4.050726395436e-01, 5.499439838268e-04, 3.2536e-01, 2.5191e-03, + 2DIAGNOSTIC, 51, -4.069277643384e-01, 5.262629343369e-04, 3.2834e-01, 2.9790e-03, + 2DIAGNOSTIC, 52, -4.092765052819e-01, 4.960155498001e-04, 3.3138e-01, 3.0382e-03, + 2DIAGNOSTIC, 53, -4.115802561405e-01, 4.630477452861e-04, 3.3470e-01, 3.3209e-03, + 2DIAGNOSTIC, 54, -4.140474643907e-01, 4.572809445750e-04, 3.3712e-01, 2.4240e-03, + 2DIAGNOSTIC, 55, -4.244222742097e-01, 5.976726023199e-04, 3.3961e-01, 2.4869e-03, + 2DIAGNOSTIC, 56, -4.532536238414e-01, 1.056266225475e-03, 3.4203e-01, 2.4221e-03, + 2DIAGNOSTIC, 57, -4.701452699234e-01, 1.636693441097e-03, 3.4591e-01, 3.8760e-03, + 2DIAGNOSTIC, 58, -4.785486633133e-01, 2.158236159014e-03, 3.4880e-01, 2.8939e-03, + 2DIAGNOSTIC, 59, -4.778757389134e-01, 2.465586861704e-03, 3.5126e-01, 2.4588e-03, + 2DIAGNOSTIC, 60, -4.876845951102e-01, 2.649102636775e-03, 3.5383e-01, 2.5671e-03, + 2DIAGNOSTIC, 61, -5.078170801232e-01, 2.821103500354e-03, 3.5655e-01, 2.7261e-03, + 2DIAGNOSTIC, 62, -5.655586969483e-01, 3.396586268847e-03, 3.5979e-01, 3.2389e-03, + 2DIAGNOSTIC, 63, -5.927130615972e-01, 3.940197273419e-03, 3.6307e-01, 3.2730e-03, + 2DIAGNOSTIC, 64, -5.945216034937e-01, 4.134938545654e-03, 3.6619e-01, 3.1250e-03, + 2DIAGNOSTIC, 65, -5.958861812410e-01, 4.057491553856e-03, 3.6905e-01, 2.8548e-03, + 2DIAGNOSTIC, 66, -5.961710739688e-01, 3.896897022695e-03, 3.7289e-01, 3.8421e-03, + 2DIAGNOSTIC, 67, -5.962721636460e-01, 3.533507209308e-03, 3.7545e-01, 2.5620e-03, + 2DIAGNOSTIC, 68, -5.967802510597e-01, 2.935397785809e-03, 3.7838e-01, 2.9302e-03, + 2DIAGNOSTIC, 69, -5.969437654253e-01, 2.083501147140e-03, 3.8095e-01, 2.5649e-03, + 2DIAGNOSTIC, 70, -5.969993450799e-01, 1.167578525133e-03, 3.8380e-01, 2.8548e-03, + 2DIAGNOSTIC, 71, -5.970559651084e-01, 3.559006434801e-04, 3.8631e-01, 2.5051e-03, + 2DIAGNOSTIC, 72, -5.968339338078e-01, 7.108424711240e-05, 3.8907e-01, 2.7661e-03, + 2DIAGNOSTIC, 73, -5.969250079954e-01, 3.917411586138e-05, 3.9189e-01, 2.8222e-03, + 2DIAGNOSTIC, 74, -5.971356781746e-01, 2.248493078473e-05, 3.9534e-01, 3.4440e-03, + 2DIAGNOSTIC, 75, -5.973073897763e-01, 1.775527787773e-05, 3.9811e-01, 2.7699e-03, + 2DIAGNOSTIC, 76, -5.972917959325e-01, 1.391651399184e-05, 4.0062e-01, 2.5120e-03, + 2DIAGNOSTIC, 77, -5.973987600207e-01, 1.067741518081e-05, 4.0388e-01, 3.2580e-03, + 2DIAGNOSTIC, 78, -5.975399055625e-01, 1.195227627107e-05, 4.0644e-01, 2.5620e-03, + 2DIAGNOSTIC, 79, -5.977026726423e-01, 1.466276926566e-05, 4.0931e-01, 2.8749e-03, + 2DIAGNOSTIC, 80, -5.982689327271e-01, 2.087187724027e-05, 4.1213e-01, 2.8150e-03, + 2DIAGNOSTIC, 81, -5.983791045225e-01, 2.622505037810e-05, 4.1519e-01, 3.0560e-03, + 2DIAGNOSTIC, 82, -5.983899154975e-01, 2.733739312314e-05, 4.1789e-01, 2.7041e-03, + 2DIAGNOSTIC, 83, -5.983980481359e-01, 2.661385910631e-05, 4.2035e-01, 2.4621e-03, + 2DIAGNOSTIC, 84, -5.984036215152e-01, 2.497885631093e-05, 4.2284e-01, 2.4862e-03, + 2DIAGNOSTIC, 85, -5.984629065814e-01, 2.270629894414e-05, 4.2561e-01, 2.7750e-03, + 2DIAGNOSTIC, 86, -5.985095566772e-01, 1.856089420950e-05, 4.2933e-01, 3.7160e-03, + 2DIAGNOSTIC, 87, -5.985493334030e-01, 1.390026806959e-05, 4.3181e-01, 2.4800e-03, + 2DIAGNOSTIC, 88, -5.985597268955e-01, 9.190435646601e-06, 4.3430e-01, 2.4939e-03, + 2DIAGNOSTIC, 89, -5.986125869242e-01, 5.187550662202e-06, 4.3685e-01, 2.5511e-03, + 2DIAGNOSTIC, 90, -5.986078732976e-01, 4.680497487268e-06, 4.3968e-01, 2.8229e-03, + 2DIAGNOSTIC, 91, -5.986064102273e-01, 4.516924947589e-06, 4.4251e-01, 2.8338e-03, + 2DIAGNOSTIC, 92, -5.986709687206e-01, 4.475813361229e-06, 4.4537e-01, 2.8572e-03, + 2DIAGNOSTIC, 93, -5.986772818576e-01, 4.135154743972e-06, 4.4786e-01, 2.4910e-03, + 2DIAGNOSTIC, 94, -5.987806774800e-01, 4.151538725820e-06, 4.5022e-01, 2.3620e-03, + 2DIAGNOSTIC, 95, -5.991975435138e-01, 6.849755104479e-06, 4.5452e-01, 4.2961e-03, + 2DIAGNOSTIC, 96, -5.993299435173e-01, 9.921559653755e-06, 4.5701e-01, 2.4951e-03, + 2DIAGNOSTIC, 97, -5.991067121193e-01, 1.086170471236e-05, 4.5995e-01, 2.9390e-03, + 2DIAGNOSTIC, 98, -5.991192633117e-01, 1.098759287036e-05, 4.6298e-01, 3.0301e-03, + 2DIAGNOSTIC, 99, -5.991182000614e-01, 1.038618009465e-05, 4.6615e-01, 3.1650e-03, + 2DIAGNOSTIC, 100, -5.991681734625e-01, 9.045770286396e-06, 4.7075e-01, 4.6079e-03, + 2DIAGNOSTIC, 101, -5.991685929218e-01, 6.872500141435e-06, 4.7340e-01, 2.6510e-03, + 2DIAGNOSTIC, 102, -5.991722897636e-01, 4.596304550894e-06, 4.7638e-01, 2.9759e-03, + 2DIAGNOSTIC, 103, -5.991495300095e-01, 1.906594635625e-06, 4.7888e-01, 2.5032e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.716271778872e-01, 1.797693134862e+308, 5.5038e-01, 7.1494e-02, + 2DIAGNOSTIC, 2, -4.719143959664e-01, 1.797693134862e+308, 5.6350e-01, 1.3121e-02, + 2DIAGNOSTIC, 3, -4.721164672927e-01, 1.797693134862e+308, 5.7669e-01, 1.3191e-02, + 2DIAGNOSTIC, 4, -4.725626208236e-01, 1.797693134862e+308, 5.9198e-01, 1.5287e-02, + 2DIAGNOSTIC, 5, -4.731047863412e-01, 1.797693134862e+308, 6.0581e-01, 1.3832e-02, + 2DIAGNOSTIC, 6, -4.732372033106e-01, 1.797693134862e+308, 6.2349e-01, 1.7686e-02, + 2DIAGNOSTIC, 7, -4.734919409094e-01, 1.797693134862e+308, 6.3749e-01, 1.3998e-02, + 2DIAGNOSTIC, 8, -4.739791569987e-01, 1.797693134862e+308, 6.5185e-01, 1.4354e-02, + 2DIAGNOSTIC, 9, -4.745543267081e-01, 1.797693134862e+308, 6.6600e-01, 1.4155e-02, + 2DIAGNOSTIC, 10, -4.746354944151e-01, 4.283719069131e-04, 6.8151e-01, 1.5504e-02, + 2DIAGNOSTIC, 11, -4.748411573201e-01, 3.837355281129e-04, 7.0036e-01, 1.8854e-02, + 2DIAGNOSTIC, 12, -4.752883939947e-01, 3.494524470517e-04, 7.1636e-01, 1.5999e-02, + 2DIAGNOSTIC, 13, -4.753136450612e-01, 2.985245927583e-04, 7.3570e-01, 1.9341e-02, + 2DIAGNOSTIC, 14, -4.755987147667e-01, 2.587531133863e-04, 7.4982e-01, 1.4125e-02, + 2DIAGNOSTIC, 15, -4.759825987548e-01, 2.380047023952e-04, 7.6381e-01, 1.3990e-02, + 2DIAGNOSTIC, 16, -4.762839060138e-01, 2.143067394736e-04, 7.7933e-01, 1.5515e-02, + 2DIAGNOSTIC, 17, -4.763257645033e-01, 1.838505406325e-04, 7.9467e-01, 1.5338e-02, + 2DIAGNOSTIC, 18, -4.763869132202e-01, 1.580191688805e-04, 8.0968e-01, 1.5010e-02, + 2DIAGNOSTIC, 19, -4.763220521643e-01, 1.366848485975e-04, 8.2784e-01, 1.8164e-02, + 2DIAGNOSTIC, 20, -4.765567141766e-01, 1.142403806992e-04, 8.4110e-01, 1.3258e-02, + 2DIAGNOSTIC, 21, -4.766784788541e-01, 9.218626855594e-05, 8.5515e-01, 1.4052e-02, + 2DIAGNOSTIC, 22, -4.768707807093e-01, 8.122583629413e-05, 8.6883e-01, 1.3680e-02, + 2DIAGNOSTIC, 23, -4.769020636294e-01, 6.523696607330e-05, 8.8572e-01, 1.6886e-02, + 2DIAGNOSTIC, 24, -4.768937713613e-01, 5.142147644660e-05, 8.9949e-01, 1.3769e-02, + 2DIAGNOSTIC, 25, -4.769045981377e-01, 4.327908812215e-05, 9.1157e-01, 1.2082e-02, + 2DIAGNOSTIC, 26, -4.769097109924e-01, 3.874969449556e-05, 9.2385e-01, 1.2280e-02, + 2DIAGNOSTIC, 27, -4.769211789797e-01, 3.214543497568e-05, 9.3598e-01, 1.2134e-02, + 2DIAGNOSTIC, 28, -4.769297282060e-01, 2.469798511136e-05, 9.4799e-01, 1.2006e-02, + 2DIAGNOSTIC, 29, -4.769489959960e-01, 1.455646901510e-05, 9.6015e-01, 1.2163e-02, + 2DIAGNOSTIC, 30, -4.769928215548e-01, 9.350165724002e-06, 9.7544e-01, 1.5285e-02, + 2DIAGNOSTIC, 31, -4.769614751368e-01, 5.318547588090e-06, 9.9224e-01, 1.6800e-02, + 2DIAGNOSTIC, 32, -4.769972281012e-01, 5.406425334913e-06, 1.0358e+00, 4.3516e-02, + 2DIAGNOSTIC, 33, -4.769972280810e-01, 5.628513337394e-06, 1.0486e+00, 1.2857e-02, + 2DIAGNOSTIC, 34, -4.769972280979e-01, 5.237532551640e-06, 1.0622e+00, 1.3557e-02, + 2DIAGNOSTIC, 35, -4.769972281265e-01, 4.645729777288e-06, 1.0743e+00, 1.2128e-02, + 2DIAGNOSTIC, 36, -4.769972281748e-01, 3.821972443460e-06, 1.0866e+00, 1.2299e-02, + 2DIAGNOSTIC, 37, -4.769972282561e-01, 2.952209383136e-06, 1.0987e+00, 1.2114e-02, + 2DIAGNOSTIC, 38, -4.769972283929e-01, 2.053209896640e-06, 1.1114e+00, 1.2692e-02, + 2DIAGNOSTIC, 39, -4.769972286221e-01, 1.363835445824e-06, 1.1245e+00, 1.3138e-02, + 2DIAGNOSTIC, 40, -4.769972290037e-01, 1.331392574730e-06, 1.1380e+00, 1.3437e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.030147928717e-01, 1.797693134862e+308, 1.3369e+00, 1.9891e-01, + Elapsed time (stage 0): 1.3662e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.606264957919e-01, 1.797693134862e+308, 4.8264e-02, 4.8264e-02, + 2DIAGNOSTIC, 2, -9.617454070999e-01, 1.797693134862e+308, 5.0142e-02, 1.8780e-03, + 2DIAGNOSTIC, 3, -9.660157757696e-01, 1.797693134862e+308, 5.2015e-02, 1.8730e-03, + 2DIAGNOSTIC, 4, -9.729072188410e-01, 1.797693134862e+308, 5.3844e-02, 1.8291e-03, + 2DIAGNOSTIC, 5, -9.818906491634e-01, 1.797693134862e+308, 5.5639e-02, 1.7948e-03, + 2DIAGNOSTIC, 6, -9.927342357607e-01, 1.797693134862e+308, 5.7806e-02, 2.1670e-03, + 2DIAGNOSTIC, 7, -1.002239626943e+00, 1.797693134862e+308, 6.1038e-02, 3.2320e-03, + 2DIAGNOSTIC, 8, -1.006976078938e+00, 1.797693134862e+308, 6.2897e-02, 1.8589e-03, + 2DIAGNOSTIC, 9, -1.009287119475e+00, 1.797693134862e+308, 6.5106e-02, 2.2089e-03, + 2DIAGNOSTIC, 10, -1.010594230034e+00, 3.913978486440e-03, 6.7818e-02, 2.7120e-03, + 2DIAGNOSTIC, 11, -1.010782402601e+00, 3.316633751368e-03, 7.0487e-02, 2.6689e-03, + 2DIAGNOSTIC, 12, -1.011617016887e+00, 2.569317895054e-03, 7.3142e-02, 2.6548e-03, + 2DIAGNOSTIC, 13, -1.012201049499e+00, 1.813914536024e-03, 7.5490e-02, 2.3479e-03, + 2DIAGNOSTIC, 14, -1.018164008967e+00, 1.265443738065e-03, 7.7816e-02, 2.3260e-03, + 2DIAGNOSTIC, 15, -1.041954295275e+00, 1.292463026114e-03, 8.1200e-02, 3.3841e-03, + 2DIAGNOSTIC, 16, -1.048093950744e+00, 1.485045842328e-03, 8.3861e-02, 2.6610e-03, + 2DIAGNOSTIC, 17, -1.049703621120e+00, 1.704609735585e-03, 8.6225e-02, 2.3639e-03, + 2DIAGNOSTIC, 18, -1.052281585158e+00, 1.861588098234e-03, 8.7849e-02, 1.6241e-03, + 2DIAGNOSTIC, 19, -1.060526738659e+00, 1.982618018568e-03, 9.0148e-02, 2.2991e-03, + 2DIAGNOSTIC, 20, -1.064381531003e+00, 1.970910882625e-03, 9.1920e-02, 1.7719e-03, + 2DIAGNOSTIC, 21, -1.066550521484e+00, 1.807476446945e-03, 9.3451e-02, 1.5318e-03, + 2DIAGNOSTIC, 22, -1.074485837175e+00, 1.608643722737e-03, 9.4980e-02, 1.5290e-03, + 2DIAGNOSTIC, 23, -1.084244706957e+00, 1.402766620389e-03, 9.7244e-02, 2.2631e-03, + 2DIAGNOSTIC, 24, -1.087384863866e+00, 1.178976201429e-03, 9.9033e-02, 1.7898e-03, + 2DIAGNOSTIC, 25, -1.087250255459e+00, 1.125462430269e-03, 1.0104e-01, 2.0061e-03, + 2DIAGNOSTIC, 26, -1.086529868816e+00, 1.031031841797e-03, 1.0282e-01, 1.7760e-03, + 2DIAGNOSTIC, 27, -1.087701160065e+00, 8.753709296525e-04, 1.0436e-01, 1.5450e-03, + 2DIAGNOSTIC, 28, -1.087938997089e+00, 6.728474253634e-04, 1.0593e-01, 1.5652e-03, + 2DIAGNOSTIC, 29, -1.089239297607e+00, 5.117000211152e-04, 1.0746e-01, 1.5380e-03, + 2DIAGNOSTIC, 30, -1.093203029351e+00, 3.866774984324e-04, 1.0922e-01, 1.7540e-03, + 2DIAGNOSTIC, 31, -1.097509144279e+00, 2.896051287933e-04, 1.1079e-01, 1.5769e-03, + 2DIAGNOSTIC, 32, -1.100018021238e+00, 2.581311119518e-04, 1.1281e-01, 2.0192e-03, + 2DIAGNOSTIC, 33, -1.103633980645e+00, 3.142760780878e-04, 1.1502e-01, 2.2070e-03, + 2DIAGNOSTIC, 34, -1.103332032766e+00, 3.597639171592e-04, 1.1687e-01, 1.8480e-03, + 2DIAGNOSTIC, 35, -1.104555536665e+00, 3.772584418750e-04, 1.1873e-01, 1.8630e-03, + 2DIAGNOSTIC, 36, -1.105542263069e+00, 3.593471536400e-04, 1.2064e-01, 1.9059e-03, + 2DIAGNOSTIC, 37, -1.106638573161e+00, 3.248733403680e-04, 1.2287e-01, 2.2359e-03, + 2DIAGNOSTIC, 38, -1.107740757600e+00, 2.711218650336e-04, 1.2479e-01, 1.9150e-03, + 2DIAGNOSTIC, 39, -1.108526908100e+00, 2.087567108331e-04, 1.2672e-01, 1.9338e-03, + 2DIAGNOSTIC, 40, -1.110011931537e+00, 1.662993243669e-04, 1.2829e-01, 1.5709e-03, + 2DIAGNOSTIC, 41, -1.116004481748e+00, 1.774388324932e-04, 1.3012e-01, 1.8280e-03, + 2DIAGNOSTIC, 42, -1.117764812937e+00, 1.968911162187e-04, 1.3192e-01, 1.7998e-03, + 2DIAGNOSTIC, 43, -1.118721007782e+00, 2.256200809776e-04, 1.3472e-01, 2.7940e-03, + 2DIAGNOSTIC, 44, -1.118002372066e+00, 2.256694217037e-04, 1.3649e-01, 1.7731e-03, + 2DIAGNOSTIC, 45, -1.118212904023e+00, 2.128511797792e-04, 1.3804e-01, 1.5502e-03, + 2DIAGNOSTIC, 46, -1.118992268673e+00, 1.899382615772e-04, 1.3957e-01, 1.5271e-03, + 2DIAGNOSTIC, 47, -1.119829331751e+00, 1.604711732696e-04, 1.4112e-01, 1.5521e-03, + 2DIAGNOSTIC, 48, -1.120534169897e+00, 1.274103274764e-04, 1.4265e-01, 1.5352e-03, + 2DIAGNOSTIC, 49, -1.121311312274e+00, 9.252568079006e-05, 1.4419e-01, 1.5390e-03, + 2DIAGNOSTIC, 50, -1.122387936174e+00, 6.322654082376e-05, 1.4624e-01, 2.0521e-03, + 2DIAGNOSTIC, 51, -1.121769516873e+00, 5.679350765990e-05, 1.4830e-01, 2.0542e-03, + 2DIAGNOSTIC, 52, -1.121907175809e+00, 5.490209994269e-05, 1.4987e-01, 1.5769e-03, + 2DIAGNOSTIC, 53, -1.122359846499e+00, 5.506724213390e-05, 1.5143e-01, 1.5569e-03, + 2DIAGNOSTIC, 54, -1.122606364824e+00, 4.756427484360e-05, 1.5301e-01, 1.5779e-03, + 2DIAGNOSTIC, 55, -1.121780222295e+00, 3.278318770129e-05, 1.5455e-01, 1.5368e-03, + 2DIAGNOSTIC, 56, -1.122613259894e+00, 2.327155438478e-05, 1.5654e-01, 1.9908e-03, + 2DIAGNOSTIC, 57, -1.121807208981e+00, 1.196103111484e-05, 1.5835e-01, 1.8110e-03, + 2DIAGNOSTIC, 58, -1.122106770275e+00, 4.506916728885e-06, 1.5992e-01, 1.5681e-03, + 2DIAGNOSTIC, 59, -1.122890896160e+00, 3.740241919303e-06, 1.6151e-01, 1.5950e-03, + 2DIAGNOSTIC, 60, -1.127900815712e+00, 2.951467719992e-05, 1.6405e-01, 2.5380e-03, + 2DIAGNOSTIC, 61, -1.130182998966e+00, 5.824905215040e-05, 1.6564e-01, 1.5919e-03, + 2DIAGNOSTIC, 62, -1.130704123040e+00, 8.323752312829e-05, 1.6740e-01, 1.7538e-03, + 2DIAGNOSTIC, 63, -1.131383995683e+00, 1.045352457904e-04, 1.6921e-01, 1.8120e-03, + 2DIAGNOSTIC, 64, -1.131946989752e+00, 1.185053312340e-04, 1.7077e-01, 1.5631e-03, + 2DIAGNOSTIC, 65, -1.133625676169e+00, 1.236158223100e-04, 1.7235e-01, 1.5750e-03, + 2DIAGNOSTIC, 66, -1.134486752082e+00, 1.232627954765e-04, 1.7466e-01, 2.3119e-03, + 2DIAGNOSTIC, 67, -1.135001720768e+00, 1.102232423647e-04, 1.7623e-01, 1.5769e-03, + 2DIAGNOSTIC, 68, -1.135441602953e+00, 9.019188944594e-05, 1.7776e-01, 1.5268e-03, + 2DIAGNOSTIC, 69, -1.136174254038e+00, 6.744473965782e-05, 1.7976e-01, 2.0030e-03, + 2DIAGNOSTIC, 70, -1.136386720998e+00, 5.815363418789e-05, 1.8156e-01, 1.7951e-03, + 2DIAGNOSTIC, 71, -1.136590266860e+00, 5.271238204653e-05, 1.8355e-01, 1.9901e-03, + 2DIAGNOSTIC, 72, -1.136988624531e+00, 4.577247513740e-05, 1.8532e-01, 1.7750e-03, + 2DIAGNOSTIC, 73, -1.138479032710e+00, 4.244312109687e-05, 1.8705e-01, 1.7281e-03, + 2DIAGNOSTIC, 74, -1.138778950186e+00, 3.793013584472e-05, 1.8855e-01, 1.4939e-03, + 2DIAGNOSTIC, 75, -1.138912601467e+00, 3.623380087608e-05, 1.9029e-01, 1.7400e-03, + 2DIAGNOSTIC, 76, -1.139042348258e+00, 3.460779848332e-05, 1.9211e-01, 1.8201e-03, + 2DIAGNOSTIC, 77, -1.139146007632e+00, 3.178983009310e-05, 1.9387e-01, 1.7598e-03, + 2DIAGNOSTIC, 78, -1.139185564550e+00, 2.748368415364e-05, 1.9564e-01, 1.7779e-03, + 2DIAGNOSTIC, 79, -1.139244564472e+00, 2.327210374292e-05, 1.9718e-01, 1.5390e-03, + 2DIAGNOSTIC, 80, -1.139411025975e+00, 1.826324017599e-05, 1.9871e-01, 1.5290e-03, + 2DIAGNOSTIC, 81, -1.140051521077e+00, 1.438934047466e-05, 2.0114e-01, 2.4331e-03, + 2DIAGNOSTIC, 82, -1.140439786959e+00, 1.158706612987e-05, 2.0269e-01, 1.5469e-03, + 2DIAGNOSTIC, 83, -1.140520075487e+00, 1.267626914746e-05, 2.0471e-01, 2.0199e-03, + 2DIAGNOSTIC, 84, -1.140571928126e+00, 1.367364009295e-05, 2.0629e-01, 1.5819e-03, + 2DIAGNOSTIC, 85, -1.140627923296e+00, 1.393891234355e-05, 2.0829e-01, 1.9948e-03, + 2DIAGNOSTIC, 86, -1.140644648361e+00, 1.328832967279e-05, 2.0984e-01, 1.5519e-03, + 2DIAGNOSTIC, 87, -1.140690162938e+00, 1.183376668282e-05, 2.1136e-01, 1.5180e-03, + 2DIAGNOSTIC, 88, -1.140782108222e+00, 9.716644170672e-06, 2.1337e-01, 2.0092e-03, + 2DIAGNOSTIC, 89, -1.140798157046e+00, 6.982543683628e-06, 2.1488e-01, 1.5090e-03, + 2DIAGNOSTIC, 90, -1.140823810128e+00, 4.190766518702e-06, 2.1638e-01, 1.5068e-03, + 2DIAGNOSTIC, 91, -1.140878119988e+00, 3.045804610836e-06, 2.1924e-01, 2.8610e-03, + 2DIAGNOSTIC, 92, -1.140881234290e+00, 2.760912014343e-06, 2.2079e-01, 1.5440e-03, + 2DIAGNOSTIC, 93, -1.140891952390e+00, 2.499727763424e-06, 2.2236e-01, 1.5721e-03, + 2DIAGNOSTIC, 94, -1.140900546623e+00, 2.201211974992e-06, 2.2389e-01, 1.5321e-03, + 2DIAGNOSTIC, 95, -1.140904305611e+00, 1.895170327027e-06, 2.2544e-01, 1.5430e-03, + 2DIAGNOSTIC, 96, -1.140906391361e+00, 1.494559640250e-06, 2.2696e-01, 1.5278e-03, + 2DIAGNOSTIC, 97, -1.140911919506e+00, 1.121332348144e-06, 2.2848e-01, 1.5140e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.375584760306e-01, 1.797693134862e+308, 2.7465e-01, 4.6168e-02, + 2DIAGNOSTIC, 2, -7.379800264383e-01, 1.797693134862e+308, 2.7817e-01, 3.5219e-03, + 2DIAGNOSTIC, 3, -7.397032696446e-01, 1.797693134862e+308, 2.8124e-01, 3.0692e-03, + 2DIAGNOSTIC, 4, -7.420562920342e-01, 1.797693134862e+308, 2.8367e-01, 2.4321e-03, + 2DIAGNOSTIC, 5, -7.447820299303e-01, 1.797693134862e+308, 2.8609e-01, 2.4252e-03, + 2DIAGNOSTIC, 6, -7.521346021322e-01, 1.797693134862e+308, 2.8849e-01, 2.3949e-03, + 2DIAGNOSTIC, 7, -7.541897312967e-01, 1.797693134862e+308, 2.9091e-01, 2.4261e-03, + 2DIAGNOSTIC, 8, -7.579906579639e-01, 1.797693134862e+308, 2.9425e-01, 3.3391e-03, + 2DIAGNOSTIC, 9, -7.585317948799e-01, 1.797693134862e+308, 2.9669e-01, 2.4369e-03, + 2DIAGNOSTIC, 10, -7.595443024120e-01, 2.268654878214e-03, 2.9943e-01, 2.7409e-03, + 2DIAGNOSTIC, 11, -7.606731815676e-01, 2.005592038106e-03, 3.0238e-01, 2.9469e-03, + 2DIAGNOSTIC, 12, -7.613596306110e-01, 1.640428875943e-03, 3.0594e-01, 3.5570e-03, + 2DIAGNOSTIC, 13, -7.615680551316e-01, 1.241297139797e-03, 3.0856e-01, 2.6221e-03, + 2DIAGNOSTIC, 14, -7.617881038660e-01, 8.579338197919e-04, 3.1151e-01, 2.9490e-03, + 2DIAGNOSTIC, 15, -7.618770909792e-01, 5.155671133448e-04, 3.1565e-01, 4.1449e-03, + 2DIAGNOSTIC, 16, -7.618343622344e-01, 3.411754668091e-04, 3.1813e-01, 2.4798e-03, + 2DIAGNOSTIC, 17, -7.618605870488e-01, 2.003282785148e-04, 3.2063e-01, 2.5032e-03, + 2DIAGNOSTIC, 18, -7.618388208627e-01, 1.362503696970e-04, 3.2313e-01, 2.5001e-03, + 2DIAGNOSTIC, 19, -7.619147586976e-01, 7.858299053849e-05, 3.2566e-01, 2.5210e-03, + 2DIAGNOSTIC, 20, -7.619452022424e-01, 3.875357634833e-05, 3.2804e-01, 2.3870e-03, + 2DIAGNOSTIC, 21, -7.619921531844e-01, 2.011403516643e-05, 3.3092e-01, 2.8751e-03, + 2DIAGNOSTIC, 22, -7.620297462191e-01, 1.379512435932e-05, 3.3349e-01, 2.5730e-03, + 2DIAGNOSTIC, 23, -7.620671501651e-01, 1.079695319735e-05, 3.3614e-01, 2.6531e-03, + 2DIAGNOSTIC, 24, -7.623333995389e-01, 1.472469594326e-05, 3.3880e-01, 2.6588e-03, + 2DIAGNOSTIC, 25, -7.633117691149e-01, 3.302170980040e-05, 3.4167e-01, 2.8679e-03, + 2DIAGNOSTIC, 26, -7.637524199346e-01, 5.230038418932e-05, 3.4542e-01, 3.7470e-03, + 2DIAGNOSTIC, 27, -7.639437832949e-01, 6.841863354519e-05, 3.4856e-01, 3.1459e-03, + 2DIAGNOSTIC, 28, -7.639632569429e-01, 7.717915176567e-05, 3.5116e-01, 2.5921e-03, + 2DIAGNOSTIC, 29, -7.640543489313e-01, 8.032417768779e-05, 3.5369e-01, 2.5370e-03, + 2DIAGNOSTIC, 30, -7.641359697460e-01, 7.693651240251e-05, 3.5647e-01, 2.7769e-03, + 2DIAGNOSTIC, 31, -7.642773323679e-01, 6.875754055383e-05, 3.5892e-01, 2.4459e-03, + 2DIAGNOSTIC, 32, -7.644245639059e-01, 5.697839338887e-05, 3.6239e-01, 3.4711e-03, + 2DIAGNOSTIC, 33, -7.646238128964e-01, 4.339761259177e-05, 3.6522e-01, 2.8372e-03, + 2DIAGNOSTIC, 34, -7.646864024744e-01, 2.996364404198e-05, 3.6784e-01, 2.6209e-03, + 2DIAGNOSTIC, 35, -7.648499082318e-01, 2.666812112880e-05, 3.7043e-01, 2.5899e-03, + 2DIAGNOSTIC, 36, -7.651436234075e-01, 2.866777813028e-05, 3.7305e-01, 2.6109e-03, + 2DIAGNOSTIC, 37, -7.656649401595e-01, 3.505253502044e-05, 3.7598e-01, 2.9309e-03, + 2DIAGNOSTIC, 38, -7.661423198004e-01, 4.261670817807e-05, 3.7902e-01, 3.0401e-03, + 2DIAGNOSTIC, 39, -7.663575323554e-01, 4.871690087461e-05, 3.8306e-01, 4.0410e-03, + 2DIAGNOSTIC, 40, -7.662527475974e-01, 4.977272563647e-05, 3.8606e-01, 3.0000e-03, + 2DIAGNOSTIC, 41, -7.662908459731e-01, 4.778756051003e-05, 3.8919e-01, 3.1362e-03, + 2DIAGNOSTIC, 42, -7.663047194131e-01, 4.273055970785e-05, 3.9188e-01, 2.6851e-03, + 2DIAGNOSTIC, 43, -7.663005300245e-01, 3.553290153732e-05, 3.9459e-01, 2.7070e-03, + 2DIAGNOSTIC, 44, -7.664280435462e-01, 2.698279691858e-05, 3.9729e-01, 2.7020e-03, + 2DIAGNOSTIC, 45, -7.665550617189e-01, 1.874307226404e-05, 4.0030e-01, 3.0100e-03, + 2DIAGNOSTIC, 46, -7.666926769397e-01, 1.257728972833e-05, 4.0355e-01, 3.2570e-03, + 2DIAGNOSTIC, 47, -7.667505890158e-01, 1.003628734611e-05, 4.0618e-01, 2.6300e-03, + 2DIAGNOSTIC, 48, -7.667140218086e-01, 1.009654584588e-05, 4.1049e-01, 4.3030e-03, + 2DIAGNOSTIC, 49, -7.667147258908e-01, 1.093552958695e-05, 4.1323e-01, 2.7430e-03, + 2DIAGNOSTIC, 50, -7.667171198504e-01, 9.963237463741e-06, 4.1586e-01, 2.6300e-03, + 2DIAGNOSTIC, 51, -7.667200036227e-01, 8.420620288441e-06, 4.1856e-01, 2.7041e-03, + 2DIAGNOSTIC, 52, -7.667232120546e-01, 6.329700696382e-06, 4.2145e-01, 2.8811e-03, + 2DIAGNOSTIC, 53, -7.667265738183e-01, 3.767660257194e-06, 4.2447e-01, 3.0239e-03, + 2DIAGNOSTIC, 54, -7.667354791901e-01, 1.934025222861e-06, 4.2803e-01, 3.5560e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.901650291580e-01, 1.797693134862e+308, 5.0192e-01, 7.3892e-02, + 2DIAGNOSTIC, 2, -5.906259637552e-01, 1.797693134862e+308, 5.1689e-01, 1.4974e-02, + 2DIAGNOSTIC, 3, -5.913072327360e-01, 1.797693134862e+308, 5.3195e-01, 1.5059e-02, + 2DIAGNOSTIC, 4, -5.923645037586e-01, 1.797693134862e+308, 5.4710e-01, 1.5150e-02, + 2DIAGNOSTIC, 5, -5.934169382804e-01, 1.797693134862e+308, 5.6153e-01, 1.4426e-02, + 2DIAGNOSTIC, 6, -5.943756344871e-01, 1.797693134862e+308, 5.7749e-01, 1.5962e-02, + 2DIAGNOSTIC, 7, -5.951243965353e-01, 1.797693134862e+308, 5.9365e-01, 1.6164e-02, + 2DIAGNOSTIC, 8, -5.953812364294e-01, 1.797693134862e+308, 6.1021e-01, 1.6562e-02, + 2DIAGNOSTIC, 9, -5.958365037899e-01, 1.797693134862e+308, 6.3164e-01, 2.1424e-02, + 2DIAGNOSTIC, 10, -5.958878661315e-01, 7.015351958661e-04, 6.4668e-01, 1.5045e-02, + 2DIAGNOSTIC, 11, -5.960689808535e-01, 5.653135395841e-04, 6.6148e-01, 1.4792e-02, + 2DIAGNOSTIC, 12, -5.962319781599e-01, 4.261821578559e-04, 6.7603e-01, 1.4552e-02, + 2DIAGNOSTIC, 13, -5.964095022291e-01, 3.014412802050e-04, 6.9194e-01, 1.5910e-02, + 2DIAGNOSTIC, 14, -5.965835952309e-01, 2.089704776220e-04, 7.0973e-01, 1.7795e-02, + 2DIAGNOSTIC, 15, -5.967622581085e-01, 1.486824797793e-04, 7.2525e-01, 1.5516e-02, + 2DIAGNOSTIC, 16, -5.968478547369e-01, 1.132731933865e-04, 7.4368e-01, 1.8430e-02, + 2DIAGNOSTIC, 17, -5.969934978629e-01, 9.687071233313e-05, 7.6311e-01, 1.9435e-02, + 2DIAGNOSTIC, 18, -5.970569631905e-01, 8.165426772219e-05, 7.7882e-01, 1.5705e-02, + 2DIAGNOSTIC, 19, -5.972519600647e-01, 7.700201110106e-05, 7.9546e-01, 1.6645e-02, + 2DIAGNOSTIC, 20, -5.977187559000e-01, 7.802702196191e-05, 8.1017e-01, 1.4709e-02, + 2DIAGNOSTIC, 21, -5.981435368809e-01, 8.532789714039e-05, 8.2925e-01, 1.9076e-02, + 2DIAGNOSTIC, 22, -5.984774798314e-01, 9.477864565554e-05, 8.4439e-01, 1.5146e-02, + 2DIAGNOSTIC, 23, -5.994384544002e-01, 1.182744096879e-04, 8.6352e-01, 1.9129e-02, + 2DIAGNOSTIC, 24, -5.995523016050e-01, 1.341009045358e-04, 8.7927e-01, 1.5751e-02, + 2DIAGNOSTIC, 25, -5.997501166687e-01, 1.434439192253e-04, 8.9441e-01, 1.5131e-02, + 2DIAGNOSTIC, 26, -5.998258432779e-01, 1.416716688509e-04, 9.1326e-01, 1.8857e-02, + 2DIAGNOSTIC, 27, -5.999746550679e-01, 1.319924102663e-04, 9.2998e-01, 1.6716e-02, + 2DIAGNOSTIC, 28, -6.001931222216e-01, 1.152826898526e-04, 9.4770e-01, 1.7720e-02, + 2DIAGNOSTIC, 29, -6.002870748834e-01, 9.349986237517e-05, 9.6500e-01, 1.7302e-02, + 2DIAGNOSTIC, 30, -6.008623961547e-01, 8.108117636488e-05, 9.8477e-01, 1.9772e-02, + 2DIAGNOSTIC, 31, -6.017809724648e-01, 8.236907101111e-05, 1.0112e+00, 2.6462e-02, + 2DIAGNOSTIC, 32, -6.017859517204e-01, 8.025271362246e-05, 1.0262e+00, 1.4998e-02, + 2DIAGNOSTIC, 33, -6.018038576182e-01, 8.510106608531e-05, 1.0417e+00, 1.5505e-02, + 2DIAGNOSTIC, 34, -6.018250882251e-01, 8.367378876526e-05, 1.0568e+00, 1.5017e-02, + 2DIAGNOSTIC, 35, -6.018639556917e-01, 7.754175981569e-05, 1.0720e+00, 1.5225e-02, + 2DIAGNOSTIC, 36, -6.019070861883e-01, 6.579541577059e-05, 1.0866e+00, 1.4579e-02, + 2DIAGNOSTIC, 37, -6.019592679718e-01, 5.109885110262e-05, 1.1034e+00, 1.6836e-02, + 2DIAGNOSTIC, 38, -6.020150730750e-01, 3.606099875109e-05, 1.1206e+00, 1.7192e-02, + 2DIAGNOSTIC, 39, -6.020511458801e-01, 1.995337566144e-05, 1.1388e+00, 1.8232e-02, + 2DIAGNOSTIC, 40, -6.020619764049e-01, 9.483724942218e-06, 1.1547e+00, 1.5852e-02, + 2DIAGNOSTIC, 41, -6.020665802618e-01, 9.404714907502e-06, 1.1705e+00, 1.5800e-02, + 2DIAGNOSTIC, 42, -6.020714427473e-01, 8.614245264972e-06, 1.1848e+00, 1.4281e-02, + 2DIAGNOSTIC, 43, -6.020788064331e-01, 7.383082011543e-06, 1.2006e+00, 1.5872e-02, + 2DIAGNOSTIC, 44, -6.020840572532e-01, 5.852275091964e-06, 1.2199e+00, 1.9228e-02, + 2DIAGNOSTIC, 45, -6.020714621218e-01, 4.176979405877e-06, 1.2442e+00, 2.4311e-02, + 2DIAGNOSTIC, 46, -6.020714930016e-01, 2.690715331297e-06, 1.2889e+00, 4.4745e-02, + 2DIAGNOSTIC, 47, -6.020714929973e-01, 1.592316796799e-06, 1.3319e+00, 4.2950e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.065024530717e-01, 1.797693134862e+308, 1.5381e+00, 2.0623e-01, + Elapsed time (stage 1): 1.5679e+00 + + +Total elapsed time: 2.9347e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:15:07 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 31 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 62 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 86.67% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 86.67% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[13140 431 9131 468 191 226 0 0 0 0 0 0 + 0 0 0 0 0 195 0 0 0 0 0 0 + 0 0 0 0 0 0 0] +[109502 87715 14536 9033 13901 9712 2944 1612 3744 2064 + 1730 1592 2460 1226 278 1089 823 0 278 224 + 288 381 0 0 199 0 0 0 0 0 + 0] +[ 0 13659 0 3735 8687 1383 3360 0 0 0 210 233 + 183 0 0 0 0 0 751 0 0 0 0 186 + 0 1629 0 0 4584 0 0] +[ 1028 108400 468 813 0 0 0 471 0 358 + 0 5698 2569 952 1337 0 682 1029 4556 3132 + 0 0 0 852 229 91349 242 714 0 1681 + 681] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:24:12 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:24:17 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:09 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:09 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:09 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:20 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:23 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC006 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:36 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:29:04 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:31:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:31:13 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:32:32 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:32:32 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55d65a2bcd20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [80.4449, 113.949, -129.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d65a133730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb36630f010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x55d65a2c0020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 54.8152, -116.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d65a2c60c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb362c50010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55d65a2d6840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [80.4449, 113.949, -129.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d65a2c2890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb35d848010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x55d65a2da3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 54.8152, -116.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55d65a2c9130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb35a189010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.482791817376e-01, 1.797693134862e+308, 2.4636e-01, 2.4636e-01, + 2DIAGNOSTIC, 2, -3.499844875395e-01, 1.797693134862e+308, 2.4761e-01, 1.2510e-03, + 2DIAGNOSTIC, 3, -3.515116706634e-01, 1.797693134862e+308, 2.4888e-01, 1.2779e-03, + 2DIAGNOSTIC, 4, -3.530460297562e-01, 1.797693134862e+308, 2.5012e-01, 1.2379e-03, + 2DIAGNOSTIC, 5, -3.561498362105e-01, 1.797693134862e+308, 2.5160e-01, 1.4791e-03, + 2DIAGNOSTIC, 6, -3.606658652761e-01, 1.797693134862e+308, 2.5284e-01, 1.2400e-03, + 2DIAGNOSTIC, 7, -3.644474389343e-01, 1.797693134862e+308, 2.5421e-01, 1.3690e-03, + 2DIAGNOSTIC, 8, -3.918344674647e-01, 1.797693134862e+308, 2.5560e-01, 1.3859e-03, + 2DIAGNOSTIC, 9, -4.193610507367e-01, 1.797693134862e+308, 2.5698e-01, 1.3800e-03, + 2DIAGNOSTIC, 10, -4.687507630725e-01, 1.627162902564e-02, 2.5877e-01, 1.7889e-03, + 2DIAGNOSTIC, 11, -5.506104786291e-01, 2.416992894231e-02, 2.6099e-01, 2.2211e-03, + 2DIAGNOSTIC, 12, -5.530931328153e-01, 2.832930260330e-02, 2.6273e-01, 1.7390e-03, + 2DIAGNOSTIC, 13, -5.595187759831e-01, 2.959705090037e-02, 2.6426e-01, 1.5321e-03, + 2DIAGNOSTIC, 14, -5.818984419989e-01, 2.905182713134e-02, 2.6632e-01, 2.0599e-03, + 2DIAGNOSTIC, 15, -5.902609534041e-01, 2.641267009448e-02, 2.6853e-01, 2.2092e-03, + 2DIAGNOSTIC, 16, -5.920321706154e-01, 2.204832632371e-02, 2.7002e-01, 1.4880e-03, + 2DIAGNOSTIC, 17, -5.952142946916e-01, 1.661734864389e-02, 2.7170e-01, 1.6861e-03, + 2DIAGNOSTIC, 18, -5.952110885472e-01, 1.141055144743e-02, 2.7320e-01, 1.4958e-03, + 2DIAGNOSTIC, 19, -5.956481939246e-01, 6.713390063033e-03, 2.7469e-01, 1.4930e-03, + 2DIAGNOSTIC, 20, -5.964047648735e-01, 3.402197240545e-03, 2.7617e-01, 1.4811e-03, + 2DIAGNOSTIC, 21, -5.990883530983e-01, 2.536027641016e-03, 2.7862e-01, 2.4450e-03, + 2DIAGNOSTIC, 22, -6.013226163184e-01, 1.658881180880e-03, 2.8047e-01, 1.8492e-03, + 2DIAGNOSTIC, 23, -6.014374779653e-01, 8.707298047865e-04, 2.8198e-01, 1.5140e-03, + 2DIAGNOSTIC, 24, -6.017612849741e-01, 6.171182598146e-04, 2.8348e-01, 1.4989e-03, + 2DIAGNOSTIC, 25, -6.032357025741e-01, 5.524373243773e-04, 2.8523e-01, 1.7569e-03, + 2DIAGNOSTIC, 26, -6.038529858850e-01, 4.899016075122e-04, 2.8769e-01, 2.4598e-03, + 2DIAGNOSTIC, 27, -6.040458023424e-01, 4.561987139906e-04, 2.8948e-01, 1.7869e-03, + 2DIAGNOSTIC, 28, -6.051337818670e-01, 4.051752636504e-04, 2.9118e-01, 1.6961e-03, + 2DIAGNOSTIC, 29, -6.050039232102e-01, 3.265065076858e-04, 2.9272e-01, 1.5440e-03, + 2DIAGNOSTIC, 30, -6.048736733771e-01, 2.337387791368e-04, 2.9420e-01, 1.4820e-03, + 2DIAGNOSTIC, 31, -6.031841195189e-01, 1.424967383308e-04, 2.9571e-01, 1.5101e-03, + 2DIAGNOSTIC, 32, -6.033618559073e-01, 8.626329932502e-05, 2.9753e-01, 1.8179e-03, + 2DIAGNOSTIC, 33, -6.035607026438e-01, 3.055863423741e-05, 2.9907e-01, 1.5430e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.419804439881e-01, 1.797693134862e+308, 5.4307e-01, 2.4399e-01, + 2DIAGNOSTIC, 2, -4.431518942210e-01, 1.797693134862e+308, 5.4520e-01, 2.1379e-03, + 2DIAGNOSTIC, 3, -4.444752489127e-01, 1.797693134862e+308, 5.4766e-01, 2.4540e-03, + 2DIAGNOSTIC, 4, -4.452483142212e-01, 1.797693134862e+308, 5.5006e-01, 2.3980e-03, + 2DIAGNOSTIC, 5, -4.454043071831e-01, 1.797693134862e+308, 5.5217e-01, 2.1100e-03, + 2DIAGNOSTIC, 6, -4.454903106280e-01, 1.797693134862e+308, 5.5429e-01, 2.1260e-03, + 2DIAGNOSTIC, 7, -4.455839442465e-01, 1.797693134862e+308, 5.5738e-01, 3.0909e-03, + 2DIAGNOSTIC, 8, -4.456013313561e-01, 1.797693134862e+308, 5.5976e-01, 2.3799e-03, + 2DIAGNOSTIC, 9, -4.456198015745e-01, 1.797693134862e+308, 5.6179e-01, 2.0280e-03, + 2DIAGNOSTIC, 10, -4.455857119383e-01, 4.327276264052e-04, 5.6406e-01, 2.2650e-03, + 2DIAGNOSTIC, 11, -4.456659001265e-01, 2.266217768373e-04, 5.6661e-01, 2.5580e-03, + 2DIAGNOSTIC, 12, -4.457392953164e-01, 9.950259026296e-05, 5.6889e-01, 2.2728e-03, + 2DIAGNOSTIC, 13, -4.457244930100e-01, 4.646712866706e-05, 5.7145e-01, 2.5620e-03, + 2DIAGNOSTIC, 14, -4.456417315566e-01, 2.852953630327e-05, 5.7500e-01, 3.5491e-03, + 2DIAGNOSTIC, 15, -4.456894036988e-01, 1.936720538361e-05, 5.7732e-01, 2.3191e-03, + 2DIAGNOSTIC, 16, -4.456978489931e-01, 1.328884521089e-05, 5.7961e-01, 2.2919e-03, + 2DIAGNOSTIC, 17, -4.457094639037e-01, 1.071373722012e-05, 5.8190e-01, 2.2881e-03, + 2DIAGNOSTIC, 18, -4.457206925885e-01, 8.665819622999e-06, 5.8482e-01, 2.9252e-03, + 2DIAGNOSTIC, 19, -4.457231474489e-01, 7.044482474440e-06, 5.8744e-01, 2.6181e-03, + 2DIAGNOSTIC, 20, -4.456733355165e-01, 2.347477372627e-06, 5.8974e-01, 2.3041e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.502233289434e-01, 1.797693134862e+308, 8.5424e-01, 2.6450e-01, + 2DIAGNOSTIC, 2, -3.510268878583e-01, 1.797693134862e+308, 8.6650e-01, 1.2264e-02, + 2DIAGNOSTIC, 3, -3.520189926943e-01, 1.797693134862e+308, 8.7889e-01, 1.2388e-02, + 2DIAGNOSTIC, 4, -3.530268940700e-01, 1.797693134862e+308, 8.9131e-01, 1.2415e-02, + 2DIAGNOSTIC, 5, -3.532878337669e-01, 1.797693134862e+308, 9.0380e-01, 1.2494e-02, + 2DIAGNOSTIC, 6, -3.534274328955e-01, 1.797693134862e+308, 9.1679e-01, 1.2992e-02, + 2DIAGNOSTIC, 7, -3.540917174084e-01, 1.797693134862e+308, 9.2939e-01, 1.2593e-02, + 2DIAGNOSTIC, 8, -3.590219545355e-01, 1.797693134862e+308, 9.5099e-01, 2.1600e-02, + 2DIAGNOSTIC, 9, -3.592367860480e-01, 1.797693134862e+308, 9.6569e-01, 1.4702e-02, + 2DIAGNOSTIC, 10, -3.592100276466e-01, 1.734826881329e-03, 9.8032e-01, 1.4630e-02, + 2DIAGNOSTIC, 11, -3.590549281002e-01, 1.565087020501e-03, 9.9463e-01, 1.4309e-02, + 2DIAGNOSTIC, 12, -3.590220472989e-01, 1.333088629337e-03, 1.0070e+00, 1.2335e-02, + 2DIAGNOSTIC, 13, -3.589989241139e-01, 1.069858324380e-03, 1.0199e+00, 1.2954e-02, + 2DIAGNOSTIC, 14, -3.589298143208e-01, 8.001741252299e-04, 1.0327e+00, 1.2827e-02, + 2DIAGNOSTIC, 15, -3.595195455948e-01, 5.437340594010e-04, 1.0458e+00, 1.3019e-02, + 2DIAGNOSTIC, 16, -3.609205340702e-01, 3.481729556187e-04, 1.0620e+00, 1.6283e-02, + 2DIAGNOSTIC, 17, -3.608832902936e-01, 1.653848636372e-04, 1.0747e+00, 1.2671e-02, + 2DIAGNOSTIC, 18, -3.617264362207e-01, 2.443392161503e-04, 1.0882e+00, 1.3465e-02, + 2DIAGNOSTIC, 19, -3.653641237347e-01, 4.533500386826e-04, 1.1017e+00, 1.3528e-02, + 2DIAGNOSTIC, 20, -3.691847176864e-01, 7.451968835980e-04, 1.1252e+00, 2.3523e-02, + 2DIAGNOSTIC, 21, -3.694976431357e-01, 9.422298876025e-04, 1.1401e+00, 1.4895e-02, + 2DIAGNOSTIC, 22, -3.698994571163e-01, 1.049867555251e-03, 1.1539e+00, 1.3788e-02, + 2DIAGNOSTIC, 23, -3.699255866216e-01, 1.052032070330e-03, 1.1669e+00, 1.2982e-02, + 2DIAGNOSTIC, 24, -3.705983158132e-01, 9.731170739513e-04, 1.1812e+00, 1.4259e-02, + 2DIAGNOSTIC, 25, -3.726553624023e-01, 8.891089493455e-04, 1.1971e+00, 1.5936e-02, + 2DIAGNOSTIC, 26, -3.752439823374e-01, 8.489573686984e-04, 1.2093e+00, 1.2200e-02, + 2DIAGNOSTIC, 27, -3.790590229348e-01, 8.428623613523e-04, 1.2217e+00, 1.2400e-02, + 2DIAGNOSTIC, 28, -3.874242159437e-01, 1.012263040760e-03, 1.2374e+00, 1.5701e-02, + 2DIAGNOSTIC, 29, -3.877601660404e-01, 1.173791794461e-03, 1.2531e+00, 1.5703e-02, + 2DIAGNOSTIC, 30, -3.879814008575e-01, 1.320986656153e-03, 1.2653e+00, 1.2179e-02, + 2DIAGNOSTIC, 31, -3.888227679786e-01, 1.364009449171e-03, 1.2792e+00, 1.3896e-02, + 2DIAGNOSTIC, 32, -3.898456253605e-01, 1.307805885687e-03, 1.2911e+00, 1.1955e-02, + 2DIAGNOSTIC, 33, -3.922347608186e-01, 1.185109795262e-03, 1.3047e+00, 1.3576e-02, + 2DIAGNOSTIC, 34, -3.928027258083e-01, 9.850760815566e-04, 1.3190e+00, 1.4257e-02, + 2DIAGNOSTIC, 35, -3.952804065761e-01, 8.066354351875e-04, 1.3309e+00, 1.1964e-02, + 2DIAGNOSTIC, 36, -4.067652182997e-01, 8.617272972961e-04, 1.3463e+00, 1.5371e-02, + 2DIAGNOSTIC, 37, -4.126514967808e-01, 1.021222745238e-03, 1.3701e+00, 2.3813e-02, + 2DIAGNOSTIC, 38, -4.127637080120e-01, 1.244560063879e-03, 1.3837e+00, 1.3628e-02, + 2DIAGNOSTIC, 39, -4.128950078600e-01, 1.350984095473e-03, 1.3955e+00, 1.1793e-02, + 2DIAGNOSTIC, 40, -4.129794316657e-01, 1.329559764542e-03, 1.4072e+00, 1.1716e-02, + 2DIAGNOSTIC, 41, -4.131393190649e-01, 1.197346239091e-03, 1.4207e+00, 1.3411e-02, + 2DIAGNOSTIC, 42, -4.132438677109e-01, 9.754166449325e-04, 1.4324e+00, 1.1765e-02, + 2DIAGNOSTIC, 43, -4.131775893600e-01, 7.158207309851e-04, 1.4440e+00, 1.1552e-02, + 2DIAGNOSTIC, 44, -4.132610498416e-01, 4.149503537276e-04, 1.4557e+00, 1.1740e-02, + 2DIAGNOSTIC, 45, -4.149664974426e-01, 1.546890407620e-04, 1.4712e+00, 1.5457e-02, + 2DIAGNOSTIC, 46, -4.159547346717e-01, 9.197712746959e-05, 1.4851e+00, 1.3932e-02, + 2DIAGNOSTIC, 47, -4.158872947628e-01, 1.160100754780e-04, 1.4965e+00, 1.1442e-02, + 2DIAGNOSTIC, 48, -4.160928775482e-01, 1.335265765633e-04, 1.5081e+00, 1.1552e-02, + 2DIAGNOSTIC, 49, -4.165341296963e-01, 1.463170377438e-04, 1.5200e+00, 1.1924e-02, + 2DIAGNOSTIC, 50, -4.200797242954e-01, 1.978893047808e-04, 1.5318e+00, 1.1746e-02, + 2DIAGNOSTIC, 51, -4.217533492930e-01, 2.533264041682e-04, 1.5487e+00, 1.6889e-02, + 2DIAGNOSTIC, 52, -4.219581410034e-01, 2.870537679440e-04, 1.5605e+00, 1.1835e-02, + 2DIAGNOSTIC, 53, -4.234488050972e-01, 3.132242818243e-04, 1.5726e+00, 1.2112e-02, + 2DIAGNOSTIC, 54, -4.304605245955e-01, 4.042486497539e-04, 1.5864e+00, 1.3764e-02, + 2DIAGNOSTIC, 55, -4.355166472533e-01, 5.396567102513e-04, 1.6004e+00, 1.4032e-02, + 2DIAGNOSTIC, 56, -4.423533585386e-01, 7.194981816835e-04, 1.6141e+00, 1.3679e-02, + 2DIAGNOSTIC, 57, -4.685204762656e-01, 1.157542175744e-03, 1.6340e+00, 1.9907e-02, + 2DIAGNOSTIC, 58, -4.926915538574e-01, 1.763860756354e-03, 1.6481e+00, 1.4098e-02, + 2DIAGNOSTIC, 59, -5.415867145980e-01, 2.770002086893e-03, 1.6625e+00, 1.4445e-02, + 2DIAGNOSTIC, 60, -5.598945964557e-01, 3.714437979339e-03, 1.6768e+00, 1.4300e-02, + 2DIAGNOSTIC, 61, -5.748871777656e-01, 4.456787634056e-03, 1.6886e+00, 1.1780e-02, + 2DIAGNOSTIC, 62, -5.782558926895e-01, 4.780969006600e-03, 1.7005e+00, 1.1897e-02, + 2DIAGNOSTIC, 63, -5.790213959713e-01, 4.654750369366e-03, 1.7150e+00, 1.4471e-02, + 2DIAGNOSTIC, 64, -5.810564765014e-01, 4.183516710801e-03, 1.7352e+00, 2.0269e-02, + 2DIAGNOSTIC, 65, -5.823921793567e-01, 3.400363214272e-03, 1.7503e+00, 1.5064e-02, + 2DIAGNOSTIC, 66, -5.832569750971e-01, 2.405691969290e-03, 1.7628e+00, 1.2508e-02, + 2DIAGNOSTIC, 67, -5.837297942203e-01, 1.495853294292e-03, 1.7801e+00, 1.7240e-02, + 2DIAGNOSTIC, 68, -5.839507017069e-01, 7.149151312105e-04, 1.7938e+00, 1.3776e-02, + 2DIAGNOSTIC, 69, -5.840115395500e-01, 3.742297136675e-04, 1.8062e+00, 1.2328e-02, + 2DIAGNOSTIC, 70, -5.843073265197e-01, 1.862515522395e-04, 1.8189e+00, 1.2702e-02, + 2DIAGNOSTIC, 71, -5.845824215541e-01, 1.309987097376e-04, 1.8332e+00, 1.4317e-02, + 2DIAGNOSTIC, 72, -5.852922969027e-01, 1.031525751961e-04, 1.8496e+00, 1.6405e-02, + 2DIAGNOSTIC, 73, -5.856322060157e-01, 7.612097407918e-05, 1.8631e+00, 1.3505e-02, + 2DIAGNOSTIC, 74, -5.859581147720e-01, 6.369315953527e-05, 1.8772e+00, 1.4161e-02, + 2DIAGNOSTIC, 75, -5.860151475665e-01, 5.770477610757e-05, 1.8896e+00, 1.2346e-02, + 2DIAGNOSTIC, 76, -5.861273044312e-01, 5.474658905259e-05, 1.9075e+00, 1.7863e-02, + 2DIAGNOSTIC, 77, -5.860949488553e-01, 5.030041423201e-05, 1.9239e+00, 1.6413e-02, + 2DIAGNOSTIC, 78, -5.861068170325e-01, 4.315519795484e-05, 1.9390e+00, 1.5174e-02, + 2DIAGNOSTIC, 79, -5.861222889155e-01, 3.277974691798e-05, 1.9513e+00, 1.2266e-02, + 2DIAGNOSTIC, 80, -5.861116398395e-01, 2.195698880402e-05, 1.9648e+00, 1.3523e-02, + 2DIAGNOSTIC, 81, -5.861619156438e-01, 1.189697022730e-05, 1.9773e+00, 1.2482e-02, + 2DIAGNOSTIC, 82, -5.862102994685e-01, 6.907722310007e-06, 1.9895e+00, 1.2222e-02, + 2DIAGNOSTIC, 83, -5.862301769725e-01, 4.150559040031e-06, 2.0020e+00, 1.2487e-02, + 2DIAGNOSTIC, 84, -5.862363843129e-01, 3.626006539196e-06, 2.0157e+00, 1.3697e-02, + 2DIAGNOSTIC, 85, -5.862512366407e-01, 3.329186692450e-06, 2.0292e+00, 1.3487e-02, + 2DIAGNOSTIC, 86, -5.863087370835e-01, 4.008364843162e-06, 2.0606e+00, 3.1387e-02, + 2DIAGNOSTIC, 87, -5.863216540903e-01, 4.167530223812e-06, 2.0759e+00, 1.5281e-02, + 2DIAGNOSTIC, 88, -5.863217255772e-01, 4.052404764169e-06, 2.0883e+00, 1.2397e-02, + 2DIAGNOSTIC, 89, -5.863087309091e-01, 3.629928767656e-06, 2.1005e+00, 1.2190e-02, + 2DIAGNOSTIC, 90, -5.863089316647e-01, 2.838647220735e-06, 2.1130e+00, 1.2522e-02, + 2DIAGNOSTIC, 91, -5.863092571683e-01, 2.167427301972e-06, 2.1253e+00, 1.2324e-02, + 2DIAGNOSTIC, 92, -5.863097450755e-01, 1.669838756400e-06, 2.1394e+00, 1.4139e-02, + 2DIAGNOSTIC, 93, -5.862972311225e-01, 1.121886613159e-06, 2.1517e+00, 1.2275e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.935905069144e-01, 1.797693134862e+308, 2.6009e+00, 4.4914e-01, + 2DIAGNOSTIC, 2, -4.937374287280e-01, 1.797693134862e+308, 2.7095e+00, 1.0864e-01, + 2DIAGNOSTIC, 3, -4.939023654808e-01, 1.797693134862e+308, 2.8179e+00, 1.0835e-01, + 2DIAGNOSTIC, 4, -4.939190076791e-01, 1.797693134862e+308, 2.9265e+00, 1.0864e-01, + 2DIAGNOSTIC, 5, -4.939255457802e-01, 1.797693134862e+308, 3.0352e+00, 1.0866e-01, + 2DIAGNOSTIC, 6, -4.939279759714e-01, 1.797693134862e+308, 3.1324e+00, 9.7282e-02, + 2DIAGNOSTIC, 7, -4.939364394744e-01, 1.797693134862e+308, 3.2406e+00, 1.0812e-01, + 2DIAGNOSTIC, 8, -4.939311910963e-01, 1.797693134862e+308, 3.3335e+00, 9.2916e-02, + 2DIAGNOSTIC, 9, -4.939363773774e-01, 1.797693134862e+308, 3.4278e+00, 9.4341e-02, + 2DIAGNOSTIC, 10, -4.939456236526e-01, 3.527416848276e-05, 3.5245e+00, 9.6715e-02, + 2DIAGNOSTIC, 11, -4.939804823209e-01, 1.843319760338e-05, 3.6220e+00, 9.7470e-02, + 2DIAGNOSTIC, 12, -4.940902841087e-01, 1.505971669222e-05, 3.7373e+00, 1.1525e-01, + 2DIAGNOSTIC, 13, -4.941750438985e-01, 2.200905115422e-05, 3.9167e+00, 1.7943e-01, + 2DIAGNOSTIC, 14, -4.942134342623e-01, 2.842311920820e-05, 4.0210e+00, 1.0431e-01, + 2DIAGNOSTIC, 15, -4.942015619020e-01, 3.144162158278e-05, 4.1408e+00, 1.1976e-01, + 2DIAGNOSTIC, 16, -4.942029706122e-01, 3.156534116587e-05, 4.2572e+00, 1.1640e-01, + 2DIAGNOSTIC, 17, -4.942026836850e-01, 2.917783465745e-05, 4.4059e+00, 1.4872e-01, + 2DIAGNOSTIC, 18, -4.942028287604e-01, 2.431821095673e-05, 4.5121e+00, 1.0619e-01, + 2DIAGNOSTIC, 19, -4.942016839147e-01, 1.803457055964e-05, 4.6140e+00, 1.0193e-01, + 2DIAGNOSTIC, 20, -4.942005349464e-01, 1.114366253097e-05, 4.7017e+00, 8.7655e-02, + 2DIAGNOSTIC, 21, -4.941994806468e-01, 4.905516160725e-06, 4.8036e+00, 1.0193e-01, + 2DIAGNOSTIC, 22, -4.941970497392e-01, 1.669168812078e-06, 4.8961e+00, 9.2529e-02, + Elapsed time (stage 0): 5.0605e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.126376980150e-01, 1.797693134862e+308, 2.2830e-01, 2.2830e-01, + 2DIAGNOSTIC, 2, -8.135400887758e-01, 1.797693134862e+308, 2.2977e-01, 1.4641e-03, + 2DIAGNOSTIC, 3, -8.129766383476e-01, 1.797693134862e+308, 2.3122e-01, 1.4539e-03, + 2DIAGNOSTIC, 4, -8.138029127693e-01, 1.797693134862e+308, 2.3243e-01, 1.2081e-03, + 2DIAGNOSTIC, 5, -8.140408526709e-01, 1.797693134862e+308, 2.3369e-01, 1.2591e-03, + 2DIAGNOSTIC, 6, -8.163646336264e-01, 1.797693134862e+308, 2.3508e-01, 1.3919e-03, + 2DIAGNOSTIC, 7, -8.190230573875e-01, 1.797693134862e+308, 2.3632e-01, 1.2441e-03, + 2DIAGNOSTIC, 8, -8.232504700234e-01, 1.797693134862e+308, 2.3792e-01, 1.5922e-03, + 2DIAGNOSTIC, 9, -8.282329335578e-01, 1.797693134862e+308, 2.3915e-01, 1.2372e-03, + 2DIAGNOSTIC, 10, -8.340862635646e-01, 1.541504835441e-03, 2.4074e-01, 1.5891e-03, + 2DIAGNOSTIC, 11, -8.474062149419e-01, 2.115961079373e-03, 2.4282e-01, 2.0781e-03, + 2DIAGNOSTIC, 12, -8.653648850309e-01, 2.932272281038e-03, 2.4450e-01, 1.6770e-03, + 2DIAGNOSTIC, 13, -8.858098154485e-01, 3.862326506959e-03, 2.4671e-01, 2.2101e-03, + 2DIAGNOSTIC, 14, -8.883078208651e-01, 4.377247282548e-03, 2.4873e-01, 2.0239e-03, + 2DIAGNOSTIC, 15, -8.908528690993e-01, 4.491287453118e-03, 2.5030e-01, 1.5700e-03, + 2DIAGNOSTIC, 16, -9.002398102781e-01, 4.425122882325e-03, 2.5207e-01, 1.7700e-03, + 2DIAGNOSTIC, 17, -9.108814296169e-01, 4.209988031260e-03, 2.5391e-01, 1.8370e-03, + 2DIAGNOSTIC, 18, -9.139688079707e-01, 3.760704075393e-03, 2.5556e-01, 1.6530e-03, + 2DIAGNOSTIC, 19, -9.210028490278e-01, 3.230651594871e-03, 2.5758e-01, 2.0192e-03, + 2DIAGNOSTIC, 20, -9.237278002179e-01, 2.602109646207e-03, 2.5909e-01, 1.5070e-03, + 2DIAGNOSTIC, 21, -9.314985592328e-01, 2.121560202680e-03, 2.6063e-01, 1.5390e-03, + 2DIAGNOSTIC, 22, -9.392067035851e-01, 1.861938884564e-03, 2.6218e-01, 1.5519e-03, + 2DIAGNOSTIC, 23, -9.441054641003e-01, 1.812781591534e-03, 2.6448e-01, 2.3060e-03, + 2DIAGNOSTIC, 24, -9.449008852831e-01, 1.645712029394e-03, 2.6635e-01, 1.8620e-03, + 2DIAGNOSTIC, 25, -9.470243203892e-01, 1.399441577395e-03, 2.6812e-01, 1.7769e-03, + 2DIAGNOSTIC, 26, -9.486095979045e-01, 1.175646625995e-03, 2.6968e-01, 1.5559e-03, + 2DIAGNOSTIC, 27, -9.489341681490e-01, 9.890133458505e-04, 2.7122e-01, 1.5409e-03, + 2DIAGNOSTIC, 28, -9.498805704818e-01, 7.689371533481e-04, 2.7286e-01, 1.6432e-03, + 2DIAGNOSTIC, 29, -9.512382431994e-01, 5.869986306559e-04, 2.7476e-01, 1.8940e-03, + 2DIAGNOSTIC, 30, -9.510145510288e-01, 3.883106491674e-04, 2.7654e-01, 1.7881e-03, + 2DIAGNOSTIC, 31, -9.506257172314e-01, 2.414411093243e-04, 2.7829e-01, 1.7490e-03, + 2DIAGNOSTIC, 32, -9.518168531515e-01, 1.696015459273e-04, 2.8001e-01, 1.7121e-03, + 2DIAGNOSTIC, 33, -9.548142230104e-01, 1.623001425586e-04, 2.8176e-01, 1.7550e-03, + 2DIAGNOSTIC, 34, -9.551040334680e-01, 1.490140442378e-04, 2.8409e-01, 2.3332e-03, + 2DIAGNOSTIC, 35, -9.554120625622e-01, 1.447273225294e-04, 2.8566e-01, 1.5619e-03, + 2DIAGNOSTIC, 36, -9.556012814163e-01, 1.432754859221e-04, 2.8729e-01, 1.6320e-03, + 2DIAGNOSTIC, 37, -9.552302045741e-01, 1.276357121738e-04, 2.8878e-01, 1.4901e-03, + 2DIAGNOSTIC, 38, -9.554712227302e-01, 1.099633009180e-04, 2.9021e-01, 1.4341e-03, + 2DIAGNOSTIC, 39, -9.557774883461e-01, 9.627647786998e-05, 2.9165e-01, 1.4400e-03, + 2DIAGNOSTIC, 40, -9.563630598156e-01, 7.750881656567e-05, 2.9308e-01, 1.4300e-03, + 2DIAGNOSTIC, 41, -9.567133107576e-01, 5.206560917993e-05, 2.9467e-01, 1.5841e-03, + 2DIAGNOSTIC, 42, -9.575588711814e-01, 3.769772680861e-05, 2.9705e-01, 2.3830e-03, + 2DIAGNOSTIC, 43, -9.576745562402e-01, 4.308013037491e-05, 2.9841e-01, 1.3618e-03, + 2DIAGNOSTIC, 44, -9.577339737407e-01, 4.659045048077e-05, 2.9977e-01, 1.3580e-03, + 2DIAGNOSTIC, 45, -9.572827911856e-01, 4.453153356745e-05, 3.0130e-01, 1.5321e-03, + 2DIAGNOSTIC, 46, -9.589320253582e-01, 5.100906440709e-05, 3.0301e-01, 1.7121e-03, + 2DIAGNOSTIC, 47, -9.589097468979e-01, 4.937232293392e-05, 3.0491e-01, 1.8930e-03, + 2DIAGNOSTIC, 48, -9.576787811141e-01, 3.680618617561e-05, 3.0622e-01, 1.3151e-03, + 2DIAGNOSTIC, 49, -9.586958643375e-01, 3.012532626599e-05, 3.0768e-01, 1.4548e-03, + 2DIAGNOSTIC, 50, -9.599940257653e-01, 3.235881918463e-05, 3.0937e-01, 1.6890e-03, + 2DIAGNOSTIC, 51, -9.607139019616e-01, 3.741371210687e-05, 3.1150e-01, 2.1381e-03, + 2DIAGNOSTIC, 52, -9.612697398727e-01, 4.710406521929e-05, 3.1302e-01, 1.5140e-03, + 2DIAGNOSTIC, 53, -9.613878453354e-01, 5.361965867887e-05, 3.1442e-01, 1.4060e-03, + 2DIAGNOSTIC, 54, -9.615001129173e-01, 5.595664796757e-05, 3.1604e-01, 1.6131e-03, + 2DIAGNOSTIC, 55, -9.629796672834e-01, 5.817769654803e-05, 3.1756e-01, 1.5280e-03, + 2DIAGNOSTIC, 56, -9.631028220471e-01, 6.426464930257e-05, 3.1896e-01, 1.3912e-03, + 2DIAGNOSTIC, 57, -9.631392589283e-01, 6.448317934847e-05, 3.2061e-01, 1.6541e-03, + 2DIAGNOSTIC, 58, -9.631599996937e-01, 5.221424233475e-05, 3.2225e-01, 1.6398e-03, + 2DIAGNOSTIC, 59, -9.631855072429e-01, 4.073359736251e-05, 3.2454e-01, 2.2871e-03, + 2DIAGNOSTIC, 60, -9.632028040983e-01, 3.235333041697e-05, 3.2610e-01, 1.5650e-03, + 2DIAGNOSTIC, 61, -9.632459760176e-01, 2.495148006931e-05, 3.2761e-01, 1.5039e-03, + 2DIAGNOSTIC, 62, -9.632575298347e-01, 1.836805834890e-05, 3.2912e-01, 1.5180e-03, + 2DIAGNOSTIC, 63, -9.632670848293e-01, 1.099062226367e-05, 3.3209e-01, 2.9671e-03, + 2DIAGNOSTIC, 64, -9.632671017497e-01, 3.191686922008e-06, 3.3752e-01, 5.4300e-03, + 2DIAGNOSTIC, 65, -9.632671017477e-01, 2.360807371090e-06, 3.4322e-01, 5.6970e-03, + 2DIAGNOSTIC, 66, -9.632671017477e-01, 1.945592838840e-06, 3.4501e-01, 1.7970e-03, + 2DIAGNOSTIC, 67, -9.632671017477e-01, 1.569156668348e-06, 3.4679e-01, 1.7800e-03, + 2DIAGNOSTIC, 68, -9.632671017477e-01, 1.194006806888e-06, 3.4909e-01, 2.2981e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.304952887950e-01, 1.797693134862e+308, 5.7165e-01, 2.2255e-01, + 2DIAGNOSTIC, 2, -8.317920181167e-01, 1.797693134862e+308, 5.7402e-01, 2.3749e-03, + 2DIAGNOSTIC, 3, -8.344498727020e-01, 1.797693134862e+308, 5.7647e-01, 2.4519e-03, + 2DIAGNOSTIC, 4, -8.383267982068e-01, 1.797693134862e+308, 5.7881e-01, 2.3391e-03, + 2DIAGNOSTIC, 5, -8.406737096623e-01, 1.797693134862e+308, 5.8193e-01, 3.1240e-03, + 2DIAGNOSTIC, 6, -8.412203112126e-01, 1.797693134862e+308, 5.8434e-01, 2.4071e-03, + 2DIAGNOSTIC, 7, -8.418726102679e-01, 1.797693134862e+308, 5.8704e-01, 2.7001e-03, + 2DIAGNOSTIC, 8, -8.415872322694e-01, 1.797693134862e+308, 5.8977e-01, 2.7308e-03, + 2DIAGNOSTIC, 9, -8.415687308736e-01, 1.797693134862e+308, 5.9248e-01, 2.7051e-03, + 2DIAGNOSTIC, 10, -8.415227025230e-01, 8.956432448919e-04, 5.9515e-01, 2.6720e-03, + 2DIAGNOSTIC, 11, -8.414947324456e-01, 5.787732281661e-04, 5.9813e-01, 2.9850e-03, + 2DIAGNOSTIC, 12, -8.413152425193e-01, 2.947170349731e-04, 6.0115e-01, 3.0141e-03, + 2DIAGNOSTIC, 13, -8.413360572272e-01, 9.615221153354e-05, 6.0414e-01, 2.9941e-03, + 2DIAGNOSTIC, 14, -8.413789223724e-01, 1.108570129647e-05, 6.0683e-01, 2.6860e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.908857595794e-01, 1.797693134862e+308, 8.8276e-01, 2.7593e-01, + 2DIAGNOSTIC, 2, -6.930397124718e-01, 1.797693134862e+308, 8.9711e-01, 1.4344e-02, + 2DIAGNOSTIC, 3, -6.963410409603e-01, 1.797693134862e+308, 9.1120e-01, 1.4093e-02, + 2DIAGNOSTIC, 4, -6.993718394346e-01, 1.797693134862e+308, 9.2503e-01, 1.3827e-02, + 2DIAGNOSTIC, 5, -7.020199357644e-01, 1.797693134862e+308, 9.3897e-01, 1.3940e-02, + 2DIAGNOSTIC, 6, -7.035886984652e-01, 1.797693134862e+308, 9.5287e-01, 1.3901e-02, + 2DIAGNOSTIC, 7, -7.049311826831e-01, 1.797693134862e+308, 9.6849e-01, 1.5621e-02, + 2DIAGNOSTIC, 8, -7.063915115420e-01, 1.797693134862e+308, 9.9094e-01, 2.2451e-02, + 2DIAGNOSTIC, 9, -7.065176366507e-01, 1.797693134862e+308, 1.0060e+00, 1.5081e-02, + 2DIAGNOSTIC, 10, -7.068155072162e-01, 1.528264792832e-03, 1.0196e+00, 1.3606e-02, + 2DIAGNOSTIC, 11, -7.070271888550e-01, 1.123169634278e-03, 1.0331e+00, 1.3460e-02, + 2DIAGNOSTIC, 12, -7.072005075702e-01, 7.625288036916e-04, 1.0465e+00, 1.3423e-02, + 2DIAGNOSTIC, 13, -7.074192750532e-01, 4.969526117087e-04, 1.0660e+00, 1.9441e-02, + 2DIAGNOSTIC, 14, -7.074682394003e-01, 3.123481381844e-04, 1.0822e+00, 1.6243e-02, + 2DIAGNOSTIC, 15, -7.075208955253e-01, 1.968015152380e-04, 1.0979e+00, 1.5742e-02, + 2DIAGNOSTIC, 16, -7.075294427728e-01, 1.172285281855e-04, 1.1124e+00, 1.4462e-02, + 2DIAGNOSTIC, 17, -7.075869516127e-01, 6.880508538716e-05, 1.1287e+00, 1.6261e-02, + 2DIAGNOSTIC, 18, -7.076163658194e-01, 5.298953633798e-05, 1.1463e+00, 1.7632e-02, + 2DIAGNOSTIC, 19, -7.076812402101e-01, 3.805395993867e-05, 1.1601e+00, 1.3820e-02, + 2DIAGNOSTIC, 20, -7.077276874495e-01, 2.814613504255e-05, 1.1769e+00, 1.6776e-02, + 2DIAGNOSTIC, 21, -7.076914213906e-01, 2.004269715077e-05, 1.1913e+00, 1.4428e-02, + 2DIAGNOSTIC, 22, -7.077207532354e-01, 1.460586390788e-05, 1.2060e+00, 1.4715e-02, + 2DIAGNOSTIC, 23, -7.078528621629e-01, 1.452902719064e-05, 1.2202e+00, 1.4209e-02, + 2DIAGNOSTIC, 24, -7.080952862101e-01, 1.802390952277e-05, 1.2362e+00, 1.5979e-02, + 2DIAGNOSTIC, 25, -7.081859949341e-01, 2.190469385520e-05, 1.2525e+00, 1.6308e-02, + 2DIAGNOSTIC, 26, -7.081404429355e-01, 2.301219611492e-05, 1.2769e+00, 2.4396e-02, + 2DIAGNOSTIC, 27, -7.081912820018e-01, 2.369532051421e-05, 1.2911e+00, 1.4209e-02, + 2DIAGNOSTIC, 28, -7.082728022732e-01, 2.372115360182e-05, 1.3077e+00, 1.6615e-02, + 2DIAGNOSTIC, 29, -7.082297970547e-01, 2.179627986863e-05, 1.3215e+00, 1.3733e-02, + 2DIAGNOSTIC, 30, -7.082846589535e-01, 1.946198279650e-05, 1.3361e+00, 1.4662e-02, + 2DIAGNOSTIC, 31, -7.082741338383e-01, 1.498396661387e-05, 1.3500e+00, 1.3848e-02, + 2DIAGNOSTIC, 32, -7.083141909171e-01, 1.033653303473e-05, 1.3658e+00, 1.5825e-02, + 2DIAGNOSTIC, 33, -7.083369655671e-01, 6.873796250070e-06, 1.3802e+00, 1.4341e-02, + 2DIAGNOSTIC, 34, -7.083673401220e-01, 6.256445579056e-06, 1.3957e+00, 1.5554e-02, + 2DIAGNOSTIC, 35, -7.083587888180e-01, 6.144076081873e-06, 1.4108e+00, 1.5105e-02, + 2DIAGNOSTIC, 36, -7.083653579925e-01, 5.100330429324e-06, 1.4255e+00, 1.4653e-02, + 2DIAGNOSTIC, 37, -7.083529236803e-01, 4.103051718524e-06, 1.4383e+00, 1.2867e-02, + 2DIAGNOSTIC, 38, -7.083634864388e-01, 3.839685398639e-06, 1.4511e+00, 1.2798e-02, + 2DIAGNOSTIC, 39, -7.083879192988e-01, 3.092101830533e-06, 1.4659e+00, 1.4722e-02, + 2DIAGNOSTIC, 40, -7.083940966662e-01, 2.783174441596e-06, 1.4788e+00, 1.2934e-02, + 2DIAGNOSTIC, 41, -7.083810248395e-01, 2.067122327677e-06, 1.4973e+00, 1.8471e-02, + 2DIAGNOSTIC, 42, -7.084175277487e-01, 2.001076287658e-06, 1.5106e+00, 1.3363e-02, + 2DIAGNOSTIC, 43, -7.083873933216e-01, 1.730153929579e-06, 1.5254e+00, 1.4757e-02, + 2DIAGNOSTIC, 44, -7.084617422747e-01, 2.341368069404e-06, 1.5419e+00, 1.6493e-02, + 2DIAGNOSTIC, 45, -7.084460534235e-01, 2.534329516864e-06, 1.5888e+00, 4.6886e-02, + 2DIAGNOSTIC, 46, -7.084460534206e-01, 2.617357855346e-06, 1.6324e+00, 4.3689e-02, + 2DIAGNOSTIC, 47, -7.084460534206e-01, 2.411917048424e-06, 1.6493e+00, 1.6867e-02, + 2DIAGNOSTIC, 48, -7.084460534206e-01, 2.129153885418e-06, 1.6650e+00, 1.5644e-02, + 2DIAGNOSTIC, 49, -7.084460534206e-01, 1.911438228940e-06, 1.6818e+00, 1.6823e-02, + 2DIAGNOSTIC, 50, -7.084460534206e-01, 1.633791672055e-06, 1.6994e+00, 1.7576e-02, + 2DIAGNOSTIC, 51, -7.084460534206e-01, 1.167379961187e-06, 1.7149e+00, 1.5544e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.859729655929e-01, 1.797693134862e+308, 2.1822e+00, 4.6725e-01, + 2DIAGNOSTIC, 2, -5.868466959198e-01, 1.797693134862e+308, 2.2903e+00, 1.0812e-01, + 2DIAGNOSTIC, 3, -5.878944523977e-01, 1.797693134862e+308, 2.3992e+00, 1.0898e-01, + 2DIAGNOSTIC, 4, -5.886715650529e-01, 1.797693134862e+308, 2.4996e+00, 1.0034e-01, + 2DIAGNOSTIC, 5, -5.891590905247e-01, 1.797693134862e+308, 2.6051e+00, 1.0552e-01, + 2DIAGNOSTIC, 6, -5.896311079363e-01, 1.797693134862e+308, 2.7269e+00, 1.2179e-01, + 2DIAGNOSTIC, 7, -5.898491678032e-01, 1.797693134862e+308, 2.8521e+00, 1.2518e-01, + 2DIAGNOSTIC, 8, -5.899478622030e-01, 1.797693134862e+308, 3.0277e+00, 1.7563e-01, + 2DIAGNOSTIC, 9, -5.900701736709e-01, 1.797693134862e+308, 3.1387e+00, 1.1100e-01, + 2DIAGNOSTIC, 10, -5.906422070889e-01, 4.643291998900e-04, 3.2474e+00, 1.0874e-01, + 2DIAGNOSTIC, 11, -5.909648404207e-01, 3.496122200071e-04, 3.3564e+00, 1.0892e-01, + 2DIAGNOSTIC, 12, -5.910477698554e-01, 2.606833314847e-04, 3.4947e+00, 1.3831e-01, + 2DIAGNOSTIC, 13, -5.910479432014e-01, 2.010253944829e-04, 3.6145e+00, 1.1981e-01, + 2DIAGNOSTIC, 14, -5.910527043711e-01, 1.587007035549e-04, 3.7334e+00, 1.1895e-01, + 2DIAGNOSTIC, 15, -5.910520048950e-01, 1.227766987889e-04, 3.8575e+00, 1.2412e-01, + 2DIAGNOSTIC, 16, -5.910463792998e-01, 9.401263878862e-05, 3.9806e+00, 1.2309e-01, + 2DIAGNOSTIC, 17, -5.910489544419e-01, 6.658258990586e-05, 4.1169e+00, 1.3625e-01, + 2DIAGNOSTIC, 18, -5.910481401599e-01, 3.906841323711e-05, 4.2681e+00, 1.5125e-01, + 2DIAGNOSTIC, 19, -5.910494263307e-01, 1.384838340867e-05, 4.3856e+00, 1.1751e-01, + 2DIAGNOSTIC, 20, -5.910458226056e-01, 3.517739789918e-06, 4.4940e+00, 1.0837e-01, + 2DIAGNOSTIC, 21, -5.910440658256e-01, 1.305566922495e-06, 4.6118e+00, 1.1777e-01, + 2DIAGNOSTIC, 22, -5.910433910398e-01, 1.116592509731e-06, 4.7131e+00, 1.0134e-01, + 2DIAGNOSTIC, 23, -5.910449808684e-01, 1.005790449427e-06, 4.8141e+00, 1.0093e-01, + 2DIAGNOSTIC, 24, -5.910476446447e-01, 1.086930144445e-06, 4.9312e+00, 1.1717e-01, + 2DIAGNOSTIC, 25, -5.910497758105e-01, 1.215075088726e-06, 5.0336e+00, 1.0233e-01, + 2DIAGNOSTIC, 26, -5.910576256468e-01, 1.379735991971e-06, 5.1813e+00, 1.4772e-01, + 2DIAGNOSTIC, 27, -5.910577369500e-01, 1.562625922345e-06, 5.3072e+00, 1.2595e-01, + 2DIAGNOSTIC, 28, -5.910572192064e-01, 1.673123943023e-06, 5.4684e+00, 1.6121e-01, + 2DIAGNOSTIC, 29, -5.910559106740e-01, 1.727641718206e-06, 5.5968e+00, 1.2837e-01, + 2DIAGNOSTIC, 30, -5.910531147441e-01, 1.616726211927e-06, 5.7044e+00, 1.0755e-01, + 2DIAGNOSTIC, 31, -5.910522488910e-01, 1.419656989063e-06, 5.8083e+00, 1.0397e-01, + 2DIAGNOSTIC, 32, -5.910502795758e-01, 1.157392215817e-06, 5.9120e+00, 1.0372e-01, + Elapsed time (stage 1): 6.0488e+00 + + +Total elapsed time: 1.1114e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:32:47 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:32:47 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55f3308e44f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 54.8152, -116.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f3308e9fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb856e68010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55f3308e5850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 54.8152, -116.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f3308e2f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb8537a9010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55f3308fcb80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 54.8152, -116.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f3308e9550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb8500ea010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55f330901d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 54.8152, -116.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f3308ffc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb84ca2b010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55f330903f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 54.8152, -116.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f3309023a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb84936c010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55f330904540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 54.8152, -116.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f3309044d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb845cad010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.359308599921e-01, 1.797693134862e+308, 2.1460e-01, 2.1460e-01, + 2DIAGNOSTIC, 2, -6.396335323841e-01, 1.797693134862e+308, 2.1679e-01, 2.1832e-03, + 2DIAGNOSTIC, 3, -6.444876380553e-01, 1.797693134862e+308, 2.1889e-01, 2.1050e-03, + 2DIAGNOSTIC, 4, -6.524733813062e-01, 1.797693134862e+308, 2.2093e-01, 2.0411e-03, + 2DIAGNOSTIC, 5, -6.653539181241e-01, 1.797693134862e+308, 2.2308e-01, 2.1479e-03, + 2DIAGNOSTIC, 6, -6.772825263014e-01, 1.797693134862e+308, 2.2533e-01, 2.2550e-03, + 2DIAGNOSTIC, 7, -6.807352188229e-01, 1.797693134862e+308, 2.2789e-01, 2.5570e-03, + 2DIAGNOSTIC, 8, -6.826403896009e-01, 1.797693134862e+308, 2.3026e-01, 2.3692e-03, + 2DIAGNOSTIC, 9, -6.825718624524e-01, 1.797693134862e+308, 2.3257e-01, 2.3062e-03, + 2DIAGNOSTIC, 10, -6.826681181858e-01, 5.401878928649e-03, 2.3511e-01, 2.5482e-03, + 2DIAGNOSTIC, 11, -6.826214836576e-01, 4.119436321978e-03, 2.3763e-01, 2.5129e-03, + 2DIAGNOSTIC, 12, -6.825631183444e-01, 2.818679775044e-03, 2.4041e-01, 2.7800e-03, + 2DIAGNOSTIC, 13, -6.827740927944e-01, 1.636571139974e-03, 2.4262e-01, 2.2120e-03, + 2DIAGNOSTIC, 14, -6.830900621270e-01, 7.245690037811e-04, 2.4487e-01, 2.2500e-03, + 2DIAGNOSTIC, 15, -6.833741371856e-01, 2.347299495716e-04, 2.4739e-01, 2.5179e-03, + 2DIAGNOSTIC, 16, -6.834150327275e-01, 1.005677307044e-04, 2.4994e-01, 2.5480e-03, + 2DIAGNOSTIC, 17, -6.840948091512e-01, 7.504048024601e-05, 2.5246e-01, 2.5249e-03, + 2DIAGNOSTIC, 18, -6.844458969805e-01, 9.821072853134e-05, 2.5497e-01, 2.5070e-03, + 2DIAGNOSTIC, 19, -6.853251322502e-01, 1.276935484072e-04, 2.5720e-01, 2.2361e-03, + 2DIAGNOSTIC, 20, -6.879946282506e-01, 2.004977227444e-04, 2.5978e-01, 2.5811e-03, + 2DIAGNOSTIC, 21, -6.886164493170e-01, 2.581449856025e-04, 2.6228e-01, 2.5001e-03, + 2DIAGNOSTIC, 22, -6.887407791817e-01, 2.881193609323e-04, 2.6505e-01, 2.7690e-03, + 2DIAGNOSTIC, 23, -6.888534560580e-01, 2.951161119224e-04, 2.6726e-01, 2.2101e-03, + 2DIAGNOSTIC, 24, -6.891443676102e-01, 2.843739443004e-04, 2.7063e-01, 3.3691e-03, + 2DIAGNOSTIC, 25, -6.890949940370e-01, 2.511711374855e-04, 2.7315e-01, 2.5170e-03, + 2DIAGNOSTIC, 26, -6.891334451813e-01, 1.981151187220e-04, 2.7534e-01, 2.1920e-03, + 2DIAGNOSTIC, 27, -6.887671252294e-01, 1.360472560738e-04, 2.7756e-01, 2.2211e-03, + 2DIAGNOSTIC, 28, -6.888321085272e-01, 7.234976279640e-05, 2.7981e-01, 2.2500e-03, + 2DIAGNOSTIC, 29, -6.890728203739e-01, 2.143700399666e-05, 2.8243e-01, 2.6181e-03, + 2DIAGNOSTIC, 30, -6.892313400407e-01, 1.112328805108e-05, 2.8509e-01, 2.6588e-03, + 2DIAGNOSTIC, 31, -6.895279789012e-01, 1.296604395080e-05, 2.8770e-01, 2.6128e-03, + 2DIAGNOSTIC, 32, -6.897531534059e-01, 1.816286467143e-05, 2.9084e-01, 3.1390e-03, + 2DIAGNOSTIC, 33, -6.896780811139e-01, 2.177341585001e-05, 2.9347e-01, 2.6278e-03, + 2DIAGNOSTIC, 34, -6.898370513879e-01, 2.873099287807e-05, 2.9600e-01, 2.5339e-03, + 2DIAGNOSTIC, 35, -6.900850878864e-01, 3.488598702138e-05, 2.9873e-01, 2.7220e-03, + 2DIAGNOSTIC, 36, -6.906757796729e-01, 4.478652565816e-05, 3.0117e-01, 2.4400e-03, + 2DIAGNOSTIC, 37, -6.909310305063e-01, 4.857685727234e-05, 3.0331e-01, 2.1400e-03, + 2DIAGNOSTIC, 38, -6.912383260772e-01, 5.174708086401e-05, 3.0574e-01, 2.4300e-03, + 2DIAGNOSTIC, 39, -6.913582575418e-01, 5.379344366769e-05, 3.0898e-01, 3.2430e-03, + 2DIAGNOSTIC, 40, -6.913772388726e-01, 5.243589821977e-05, 3.1144e-01, 2.4600e-03, + 2DIAGNOSTIC, 41, -6.913110382487e-01, 4.845302258703e-05, 3.1369e-01, 2.2540e-03, + 2DIAGNOSTIC, 42, -6.913640212051e-01, 4.291520287984e-05, 3.1585e-01, 2.1529e-03, + 2DIAGNOSTIC, 43, -6.912528804120e-01, 3.180459501666e-05, 3.1797e-01, 2.1281e-03, + 2DIAGNOSTIC, 44, -6.912817192640e-01, 2.004879616847e-05, 3.2014e-01, 2.1632e-03, + 2DIAGNOSTIC, 45, -6.913088886693e-01, 9.421091177231e-06, 3.2279e-01, 2.6541e-03, + 2DIAGNOSTIC, 46, -6.911943360071e-01, 2.706804013725e-06, 3.2479e-01, 2.0020e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.791638652577e-01, 1.797693134862e+308, 5.5429e-01, 2.2950e-01, + 2DIAGNOSTIC, 2, -5.798599847223e-01, 1.797693134862e+308, 5.6835e-01, 1.4057e-02, + 2DIAGNOSTIC, 3, -5.805526034186e-01, 1.797693134862e+308, 5.8513e-01, 1.6782e-02, + 2DIAGNOSTIC, 4, -5.809412172250e-01, 1.797693134862e+308, 6.0164e-01, 1.6508e-02, + 2DIAGNOSTIC, 5, -5.810234929898e-01, 1.797693134862e+308, 6.1835e-01, 1.6710e-02, + 2DIAGNOSTIC, 6, -5.810824822551e-01, 1.797693134862e+308, 6.3371e-01, 1.5363e-02, + 2DIAGNOSTIC, 7, -5.811606185329e-01, 1.797693134862e+308, 6.4891e-01, 1.5199e-02, + 2DIAGNOSTIC, 8, -5.812902430531e-01, 1.797693134862e+308, 6.6410e-01, 1.5188e-02, + 2DIAGNOSTIC, 9, -5.813257999470e-01, 1.797693134862e+308, 6.7930e-01, 1.5204e-02, + 2DIAGNOSTIC, 10, -5.815530914166e-01, 2.135925664658e-04, 6.9511e-01, 1.5810e-02, + 2DIAGNOSTIC, 11, -5.818602802059e-01, 1.488597267589e-04, 7.0906e-01, 1.3954e-02, + 2DIAGNOSTIC, 12, -5.832764494668e-01, 1.670507319329e-04, 7.2838e-01, 1.9317e-02, + 2DIAGNOSTIC, 13, -5.847174806530e-01, 2.461073598333e-04, 7.4407e-01, 1.5690e-02, + 2DIAGNOSTIC, 14, -5.855135540268e-01, 3.322564167850e-04, 7.9084e-01, 4.6767e-02, + 2DIAGNOSTIC, 15, -5.855135537971e-01, 3.798685080839e-04, 8.0472e-01, 1.3881e-02, + 2DIAGNOSTIC, 16, -5.855136221780e-01, 3.893301658734e-04, 8.1851e-01, 1.3795e-02, + 2DIAGNOSTIC, 17, -5.855137377750e-01, 3.637827790757e-04, 8.3165e-01, 1.3140e-02, + 2DIAGNOSTIC, 18, -5.855139331871e-01, 3.104826802931e-04, 8.4704e-01, 1.5383e-02, + 2DIAGNOSTIC, 19, -5.855141055165e-01, 2.351753685753e-04, 8.5989e-01, 1.2849e-02, + 2DIAGNOSTIC, 20, -5.855010262773e-01, 1.516664675329e-04, 8.7298e-01, 1.3095e-02, + 2DIAGNOSTIC, 21, -5.855015097503e-01, 6.908236047024e-05, 8.8618e-01, 1.3198e-02, + 2DIAGNOSTIC, 22, -5.855023250660e-01, 1.841906921903e-05, 9.0041e-01, 1.4228e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.872701011916e-01, 1.797693134862e+308, 1.2814e+00, 3.8098e-01, + 2DIAGNOSTIC, 2, -4.877807273304e-01, 1.797693134862e+308, 1.3832e+00, 1.0180e-01, + 2DIAGNOSTIC, 3, -4.881202051312e-01, 1.797693134862e+308, 1.4836e+00, 1.0043e-01, + 2DIAGNOSTIC, 4, -4.882047922340e-01, 1.797693134862e+308, 1.5786e+00, 9.4943e-02, + 2DIAGNOSTIC, 5, -4.883609073447e-01, 1.797693134862e+308, 1.6892e+00, 1.1064e-01, + 2DIAGNOSTIC, 6, -4.883523684943e-01, 1.797693134862e+308, 1.7948e+00, 1.0558e-01, + 2DIAGNOSTIC, 7, -4.883962111625e-01, 1.797693134862e+308, 1.8878e+00, 9.2998e-02, + 2DIAGNOSTIC, 8, -4.884748964778e-01, 1.797693134862e+308, 1.9924e+00, 1.0464e-01, + 2DIAGNOSTIC, 9, -4.884840712215e-01, 1.797693134862e+308, 2.1508e+00, 1.5844e-01, + 2DIAGNOSTIC, 10, -4.884947730975e-01, 1.298657624067e-04, 2.2702e+00, 1.1931e-01, + 2DIAGNOSTIC, 11, -4.884876186783e-01, 7.119672275205e-05, 2.3639e+00, 9.3742e-02, + 2DIAGNOSTIC, 12, -4.884924994269e-01, 4.086884345611e-05, 2.4835e+00, 1.1964e-01, + 2DIAGNOSTIC, 13, -4.884862154411e-01, 2.657635202517e-05, 2.6147e+00, 1.3115e-01, + 2DIAGNOSTIC, 14, -4.884885720453e-01, 1.557378250724e-05, 2.7203e+00, 1.0566e-01, + 2DIAGNOSTIC, 15, -4.884861194743e-01, 1.085725937507e-05, 2.8287e+00, 1.0837e-01, + 2DIAGNOSTIC, 16, -4.884859162354e-01, 5.607775506414e-06, 2.9357e+00, 1.0701e-01, + 2DIAGNOSTIC, 17, -4.884853151305e-01, 2.055304553980e-06, 3.0406e+00, 1.0488e-01, + 2DIAGNOSTIC, 18, -4.884823689261e-01, 1.323306975741e-06, 3.1325e+00, 9.1856e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.232924400823e-01, 1.797693134862e+308, 4.3640e+00, 1.2315e+00, + 2DIAGNOSTIC, 2, -4.235603994298e-01, 1.797693134862e+308, 4.9197e+00, 5.5570e-01, + 2DIAGNOSTIC, 3, -4.237640455521e-01, 1.797693134862e+308, 5.4686e+00, 5.4887e-01, + 2DIAGNOSTIC, 4, -4.238733975181e-01, 1.797693134862e+308, 6.0991e+00, 6.3051e-01, + 2DIAGNOSTIC, 5, -4.240067017675e-01, 1.797693134862e+308, 6.7190e+00, 6.1992e-01, + 2DIAGNOSTIC, 6, -4.239142223342e-01, 1.797693134862e+308, 7.3686e+00, 6.4962e-01, + 2DIAGNOSTIC, 7, -4.243728672643e-01, 1.797693134862e+308, 8.1489e+00, 7.8028e-01, + 2DIAGNOSTIC, 8, -4.243766108105e-01, 1.797693134862e+308, 9.0706e+00, 9.2170e-01, + 2DIAGNOSTIC, 9, -4.243757554326e-01, 1.797693134862e+308, 9.9450e+00, 8.7443e-01, + 2DIAGNOSTIC, 10, -4.243757323621e-01, 1.669770178197e-04, 1.0505e+01, 5.5947e-01, + 2DIAGNOSTIC, 11, -4.243754244313e-01, 1.217496439809e-04, 1.1106e+01, 6.0196e-01, + 2DIAGNOSTIC, 12, -4.243752560105e-01, 8.782134789082e-05, 1.1692e+01, 5.8569e-01, + 2DIAGNOSTIC, 13, -4.243748807263e-01, 6.165748314720e-05, 1.2346e+01, 6.5418e-01, + 2DIAGNOSTIC, 14, -4.243747314569e-01, 3.920533813100e-05, 1.2940e+01, 5.9347e-01, + 2DIAGNOSTIC, 15, -4.243744339149e-01, 2.268750784631e-05, 1.3576e+01, 6.3615e-01, + 2DIAGNOSTIC, 16, -4.243741707649e-01, 1.916270010269e-06, 1.4210e+01, 6.3418e-01, + 2DIAGNOSTIC, 17, -4.243742752464e-01, 1.674412271439e-06, 1.4917e+01, 7.0642e-01, + 2DIAGNOSTIC, 18, -4.243741746541e-01, 1.613905116514e-06, 1.5545e+01, 6.2852e-01, + 2DIAGNOSTIC, 19, -4.243740594484e-01, 1.539799654761e-06, 1.6166e+01, 6.2063e-01, + 2DIAGNOSTIC, 20, -4.243738022614e-01, 1.476652553851e-06, 1.6727e+01, 5.6167e-01, + 2DIAGNOSTIC, 21, -4.243737055621e-01, 1.417519227533e-06, 1.7314e+01, 5.8702e-01, + 2DIAGNOSTIC, 22, -4.243735927768e-01, 1.364385616050e-06, 1.7815e+01, 5.0058e-01, + 2DIAGNOSTIC, 23, -4.243736421661e-01, 1.313946988643e-06, 1.8340e+01, 5.2536e-01, + 2DIAGNOSTIC, 24, -4.243737253462e-01, 1.272563226691e-06, 1.8893e+01, 5.5221e-01, + 2DIAGNOSTIC, 25, -4.243738662625e-01, 1.235535805909e-06, 1.9499e+01, 6.0689e-01, + 2DIAGNOSTIC, 26, -4.243739264870e-01, 1.199502383649e-06, 2.0104e+01, 6.0493e-01, + 2DIAGNOSTIC, 27, -4.243737738085e-01, 1.167257294717e-06, 2.0716e+01, 6.1194e-01, + 2DIAGNOSTIC, 28, -4.243736771261e-01, 1.133786874108e-06, 2.1351e+01, 6.3433e-01, + 2DIAGNOSTIC, 29, -4.243738411178e-01, 1.104098348068e-06, 2.1970e+01, 6.1933e-01, + 2DIAGNOSTIC, 30, -4.243736627361e-01, 1.065812448166e-06, 2.2517e+01, 5.4739e-01, + 2DIAGNOSTIC, 31, -4.243736995346e-01, 1.028424026925e-06, 2.3161e+01, 6.4399e-01, + Elapsed time (stage 0): 2.3540e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.663312877357e-01, 1.797693134862e+308, 1.8488e-01, 1.8488e-01, + 2DIAGNOSTIC, 2, -6.683309903524e-01, 1.797693134862e+308, 1.8721e-01, 2.3289e-03, + 2DIAGNOSTIC, 3, -6.718927954328e-01, 1.797693134862e+308, 1.8944e-01, 2.2340e-03, + 2DIAGNOSTIC, 4, -6.760846576644e-01, 1.797693134862e+308, 1.9166e-01, 2.2140e-03, + 2DIAGNOSTIC, 5, -6.805376458668e-01, 1.797693134862e+308, 1.9390e-01, 2.2471e-03, + 2DIAGNOSTIC, 6, -6.840684684985e-01, 1.797693134862e+308, 1.9611e-01, 2.2061e-03, + 2DIAGNOSTIC, 7, -6.868836223073e-01, 1.797693134862e+308, 1.9830e-01, 2.1920e-03, + 2DIAGNOSTIC, 8, -6.883850992544e-01, 1.797693134862e+308, 2.0169e-01, 3.3829e-03, + 2DIAGNOSTIC, 9, -6.886452044207e-01, 1.797693134862e+308, 2.0413e-01, 2.4440e-03, + 2DIAGNOSTIC, 10, -6.887282736123e-01, 2.400120619983e-03, 2.0695e-01, 2.8200e-03, + 2DIAGNOSTIC, 11, -6.889869336110e-01, 1.836359748204e-03, 2.0992e-01, 2.9669e-03, + 2DIAGNOSTIC, 12, -6.888626664875e-01, 1.266909683357e-03, 2.1298e-01, 3.0582e-03, + 2DIAGNOSTIC, 13, -6.887698605890e-01, 7.818814160844e-04, 2.1641e-01, 3.4359e-03, + 2DIAGNOSTIC, 14, -6.888740332583e-01, 4.224959678889e-04, 2.1962e-01, 3.2072e-03, + 2DIAGNOSTIC, 15, -6.889081573604e-01, 1.961418341251e-04, 2.2221e-01, 2.5911e-03, + 2DIAGNOSTIC, 16, -6.891874658183e-01, 7.791587677275e-05, 2.2500e-01, 2.7931e-03, + 2DIAGNOSTIC, 17, -6.901561310474e-01, 5.819519868172e-05, 2.2742e-01, 2.4221e-03, + 2DIAGNOSTIC, 18, -6.907769939243e-01, 8.390347575102e-05, 2.2980e-01, 2.3739e-03, + 2DIAGNOSTIC, 19, -6.914896598452e-01, 1.204306843804e-04, 2.3234e-01, 2.5439e-03, + 2DIAGNOSTIC, 20, -6.926252307809e-01, 1.673140211991e-04, 2.3598e-01, 3.6330e-03, + 2DIAGNOSTIC, 21, -6.926701145022e-01, 1.998920938662e-04, 2.3856e-01, 2.5811e-03, + 2DIAGNOSTIC, 22, -6.927363411853e-01, 2.100367070076e-04, 2.4087e-01, 2.3160e-03, + 2DIAGNOSTIC, 23, -6.928191535785e-01, 1.996452689596e-04, 2.4306e-01, 2.1880e-03, + 2DIAGNOSTIC, 24, -6.932305952901e-01, 1.804229726100e-04, 2.4543e-01, 2.3658e-03, + 2DIAGNOSTIC, 25, -6.935140594003e-01, 1.509038641876e-04, 2.4780e-01, 2.3699e-03, + 2DIAGNOSTIC, 26, -6.935454944256e-01, 1.143058579111e-04, 2.5018e-01, 2.3792e-03, + 2DIAGNOSTIC, 27, -6.934634159348e-01, 8.364096469040e-05, 2.5263e-01, 2.4509e-03, + 2DIAGNOSTIC, 28, -6.933463317075e-01, 5.482477133167e-05, 2.5483e-01, 2.2070e-03, + 2DIAGNOSTIC, 29, -6.932298831500e-01, 3.092555434813e-05, 2.5719e-01, 2.3551e-03, + 2DIAGNOSTIC, 30, -6.932416693587e-01, 2.155118748468e-05, 2.5930e-01, 2.1081e-03, + 2DIAGNOSTIC, 31, -6.931207799222e-01, 9.846770216856e-06, 2.6149e-01, 2.1889e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.758749290879e-01, 1.797693134862e+308, 4.6272e-01, 2.0124e-01, + 2DIAGNOSTIC, 2, -5.772674409038e-01, 1.797693134862e+308, 4.7720e-01, 1.4479e-02, + 2DIAGNOSTIC, 3, -5.792022144192e-01, 1.797693134862e+308, 4.9172e-01, 1.4515e-02, + 2DIAGNOSTIC, 4, -5.816303233904e-01, 1.797693134862e+308, 5.0672e-01, 1.5002e-02, + 2DIAGNOSTIC, 5, -5.835960542611e-01, 1.797693134862e+308, 5.2142e-01, 1.4700e-02, + 2DIAGNOSTIC, 6, -5.853169601328e-01, 1.797693134862e+308, 5.3587e-01, 1.4454e-02, + 2DIAGNOSTIC, 7, -5.864117138524e-01, 1.797693134862e+308, 5.5263e-01, 1.6759e-02, + 2DIAGNOSTIC, 8, -5.876738245682e-01, 1.797693134862e+308, 5.7290e-01, 2.0268e-02, + 2DIAGNOSTIC, 9, -5.880713708671e-01, 1.797693134862e+308, 5.8759e-01, 1.4693e-02, + 2DIAGNOSTIC, 10, -5.881754587569e-01, 1.474783569463e-03, 6.0292e-01, 1.5330e-02, + 2DIAGNOSTIC, 11, -5.882709833594e-01, 1.129273225443e-03, 6.2139e-01, 1.8468e-02, + 2DIAGNOSTIC, 12, -5.883105685447e-01, 7.981214041277e-04, 6.3611e-01, 1.4722e-02, + 2DIAGNOSTIC, 13, -5.883972965801e-01, 5.204666348690e-04, 6.5282e-01, 1.6710e-02, + 2DIAGNOSTIC, 14, -5.884684460099e-01, 3.214160358852e-04, 6.7500e-01, 2.2177e-02, + 2DIAGNOSTIC, 15, -5.884730245566e-01, 1.831222859377e-04, 6.9380e-01, 1.8795e-02, + 2DIAGNOSTIC, 16, -5.884734819891e-01, 9.757358686646e-05, 7.1115e-01, 1.7354e-02, + 2DIAGNOSTIC, 17, -5.884718960615e-01, 4.371200946418e-05, 7.2822e-01, 1.7066e-02, + 2DIAGNOSTIC, 18, -5.884684411732e-01, 2.566018748962e-05, 7.4487e-01, 1.6657e-02, + 2DIAGNOSTIC, 19, -5.884671643094e-01, 1.735702963131e-05, 7.5964e-01, 1.4764e-02, + 2DIAGNOSTIC, 20, -5.884691196322e-01, 1.097399083839e-05, 7.7690e-01, 1.7267e-02, + 2DIAGNOSTIC, 21, -5.884657941858e-01, 6.478849818831e-06, 7.9414e-01, 1.7239e-02, + 2DIAGNOSTIC, 22, -5.884609872051e-01, 2.666481846852e-06, 8.0971e-01, 1.5565e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.890588237795e-01, 1.797693134862e+308, 1.1993e+00, 3.8956e-01, + 2DIAGNOSTIC, 2, -4.895521440188e-01, 1.797693134862e+308, 1.3051e+00, 1.0578e-01, + 2DIAGNOSTIC, 3, -4.901573412875e-01, 1.797693134862e+308, 1.4117e+00, 1.0662e-01, + 2DIAGNOSTIC, 4, -4.907340617936e-01, 1.797693134862e+308, 1.5159e+00, 1.0422e-01, + 2DIAGNOSTIC, 5, -4.910723071210e-01, 1.797693134862e+308, 1.6164e+00, 1.0048e-01, + 2DIAGNOSTIC, 6, -4.914672111978e-01, 1.797693134862e+308, 1.7775e+00, 1.6114e-01, + 2DIAGNOSTIC, 7, -4.915801658173e-01, 1.797693134862e+308, 1.9478e+00, 1.7027e-01, + 2DIAGNOSTIC, 8, -4.915832193732e-01, 1.797693134862e+308, 2.0477e+00, 9.9911e-02, + 2DIAGNOSTIC, 9, -4.915941144043e-01, 1.797693134862e+308, 2.1492e+00, 1.0150e-01, + 2DIAGNOSTIC, 10, -4.916098989397e-01, 3.388057028061e-04, 2.2530e+00, 1.0384e-01, + 2DIAGNOSTIC, 11, -4.916301523448e-01, 2.243645659878e-04, 2.3585e+00, 1.0549e-01, + 2DIAGNOSTIC, 12, -4.916529966540e-01, 1.336560719572e-04, 2.4613e+00, 1.0272e-01, + 2DIAGNOSTIC, 13, -4.916785553202e-01, 7.287893071278e-05, 2.5590e+00, 9.7730e-02, + 2DIAGNOSTIC, 14, -4.917093323778e-01, 3.936818728793e-05, 2.6572e+00, 9.8233e-02, + 2DIAGNOSTIC, 15, -4.917483067032e-01, 2.109274755112e-05, 2.7620e+00, 1.0478e-01, + 2DIAGNOSTIC, 16, -4.918600958106e-01, 2.155062077756e-05, 2.8790e+00, 1.1698e-01, + 2DIAGNOSTIC, 17, -4.919418454429e-01, 2.669586680114e-05, 2.9961e+00, 1.1715e-01, + 2DIAGNOSTIC, 18, -4.919805015458e-01, 3.029101287067e-05, 3.1553e+00, 1.5915e-01, + 2DIAGNOSTIC, 19, -4.919735358782e-01, 3.101766306716e-05, 3.2575e+00, 1.0226e-01, + 2DIAGNOSTIC, 20, -4.919884240012e-01, 2.985874190997e-05, 3.3597e+00, 1.0213e-01, + 2DIAGNOSTIC, 21, -4.919938167869e-01, 2.682681044580e-05, 3.4655e+00, 1.0585e-01, + 2DIAGNOSTIC, 22, -4.920012124758e-01, 2.245653872865e-05, 3.5847e+00, 1.1921e-01, + 2DIAGNOSTIC, 23, -4.920052730880e-01, 1.726042187471e-05, 3.9427e+00, 3.5794e-01, + 2DIAGNOSTIC, 24, -4.920052726403e-01, 1.178843504161e-05, 4.0478e+00, 1.0516e-01, + 2DIAGNOSTIC, 25, -4.920052732009e-01, 6.635401391876e-06, 4.1539e+00, 1.0611e-01, + 2DIAGNOSTIC, 26, -4.920052741486e-01, 3.814537290342e-06, 4.2608e+00, 1.0683e-01, + 2DIAGNOSTIC, 27, -4.920052757502e-01, 2.685965714601e-06, 4.3726e+00, 1.1179e-01, + 2DIAGNOSTIC, 28, -4.920052784546e-01, 2.301984955287e-06, 4.4734e+00, 1.0087e-01, + 2DIAGNOSTIC, 29, -4.920052830192e-01, 1.690599657440e-06, 4.5736e+00, 1.0017e-01, + 2DIAGNOSTIC, 30, -4.920052907155e-01, 1.351072440661e-06, 4.6779e+00, 1.0429e-01, + 2DIAGNOSTIC, 31, -4.920053036668e-01, 1.103816106338e-06, 4.7842e+00, 1.0632e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.245447902737e-01, 1.797693134862e+308, 6.0898e+00, 1.3056e+00, + 2DIAGNOSTIC, 2, -4.246979189513e-01, 1.797693134862e+308, 6.6934e+00, 6.0362e-01, + 2DIAGNOSTIC, 3, -4.248176166370e-01, 1.797693134862e+308, 7.3350e+00, 6.4160e-01, + 2DIAGNOSTIC, 4, -4.252957988895e-01, 1.797693134862e+308, 8.1091e+00, 7.7413e-01, + 2DIAGNOSTIC, 5, -4.256182565457e-01, 1.797693134862e+308, 9.7111e+00, 1.6020e+00, + 2DIAGNOSTIC, 6, -4.256180350906e-01, 1.797693134862e+308, 1.0549e+01, 8.3746e-01, + 2DIAGNOSTIC, 7, -4.256180184860e-01, 1.797693134862e+308, 1.1383e+01, 8.3421e-01, + 2DIAGNOSTIC, 8, -4.256176675416e-01, 1.797693134862e+308, 1.2086e+01, 7.0316e-01, + 2DIAGNOSTIC, 9, -4.256174321044e-01, 1.797693134862e+308, 1.2702e+01, 6.1571e-01, + 2DIAGNOSTIC, 10, -4.256175141216e-01, 1.761351048584e-04, 1.3396e+01, 6.9424e-01, + 2DIAGNOSTIC, 11, -4.256173120777e-01, 1.148917562038e-04, 1.4088e+01, 6.9186e-01, + 2DIAGNOSTIC, 12, -4.256170811410e-01, 6.275672968539e-05, 1.4716e+01, 6.2794e-01, + 2DIAGNOSTIC, 13, -4.256168867909e-01, 1.885767856782e-05, 1.5436e+01, 7.2023e-01, + 2DIAGNOSTIC, 14, -4.256169446655e-01, 2.124165944056e-06, 1.6124e+01, 6.8791e-01, + 2DIAGNOSTIC, 15, -4.256169005578e-01, 1.996182163802e-06, 1.6813e+01, 6.8904e-01, + 2DIAGNOSTIC, 16, -4.256168750112e-01, 1.885197725468e-06, 1.7420e+01, 6.0707e-01, + 2DIAGNOSTIC, 17, -4.256167877022e-01, 1.793344119982e-06, 1.8098e+01, 6.7836e-01, + 2DIAGNOSTIC, 18, -4.256166770541e-01, 1.702198956240e-06, 1.8863e+01, 7.6421e-01, + 2DIAGNOSTIC, 19, -4.256166137383e-01, 1.615995424559e-06, 1.9550e+01, 6.8720e-01, + 2DIAGNOSTIC, 20, -4.256165410454e-01, 1.544179651071e-06, 2.0178e+01, 6.2807e-01, + 2DIAGNOSTIC, 21, -4.256162322289e-01, 1.467505008415e-06, 2.0863e+01, 6.8520e-01, + 2DIAGNOSTIC, 22, -4.256163713251e-01, 1.399914389619e-06, 2.1569e+01, 7.0612e-01, + 2DIAGNOSTIC, 23, -4.256161896990e-01, 1.331368797715e-06, 2.2324e+01, 7.5534e-01, + 2DIAGNOSTIC, 24, -4.256161034838e-01, 1.272720002832e-06, 2.3005e+01, 6.8086e-01, + 2DIAGNOSTIC, 25, -4.256158990247e-01, 1.217190580272e-06, 2.3712e+01, 7.0690e-01, + 2DIAGNOSTIC, 26, -4.256158516381e-01, 1.169465592428e-06, 2.4398e+01, 6.8537e-01, + 2DIAGNOSTIC, 27, -4.256156372836e-01, 1.122887851687e-06, 2.5004e+01, 6.0646e-01, + 2DIAGNOSTIC, 28, -4.256154711153e-01, 1.078300179758e-06, 2.5688e+01, 6.8385e-01, + 2DIAGNOSTIC, 29, -4.256154469587e-01, 1.040370775834e-06, 2.6391e+01, 7.0321e-01, + 2DIAGNOSTIC, 30, -4.256154450491e-01, 1.008829565684e-06, 2.7080e+01, 6.8936e-01, + Elapsed time (stage 1): 2.7484e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.958009874477e-01, 1.797693134862e+308, 2.5165e-01, 2.5165e-01, + 1DIAGNOSTIC, 2, -9.041149122286e-01, 1.797693134862e+308, 3.4764e-01, 9.5989e-02, + 1DIAGNOSTIC, 3, -9.103527759531e-01, 1.797693134862e+308, 4.4032e-01, 9.2679e-02, + 1DIAGNOSTIC, 4, -9.147870940900e-01, 1.797693134862e+308, 5.3785e-01, 9.7533e-02, + 1DIAGNOSTIC, 5, -9.185210631872e-01, 1.797693134862e+308, 6.3020e-01, 9.2341e-02, + 1DIAGNOSTIC, 6, -9.215230512501e-01, 1.797693134862e+308, 7.3478e-01, 1.0458e-01, + 1DIAGNOSTIC, 7, -9.242146405058e-01, 1.797693134862e+308, 8.2915e-01, 9.4375e-02, + 1DIAGNOSTIC, 8, -9.265352497926e-01, 1.797693134862e+308, 9.2887e-01, 9.9713e-02, + 1DIAGNOSTIC, 9, -9.284858532681e-01, 1.797693134862e+308, 1.0304e+00, 1.0153e-01, + 1DIAGNOSTIC, 10, -9.302109951077e-01, 2.232357003751e-03, 1.1333e+00, 1.0291e-01, + 1DIAGNOSTIC, 11, -9.316365123808e-01, 1.652954731642e-03, 1.2276e+00, 9.4285e-02, + 1DIAGNOSTIC, 12, -9.328917078312e-01, 1.266790605669e-03, 1.3354e+00, 1.0783e-01, + 1DIAGNOSTIC, 13, -9.340193818830e-01, 9.996461864491e-04, 1.4301e+00, 9.4650e-02, + 1DIAGNOSTIC, 14, -9.349398194468e-01, 7.970182221929e-04, 1.5266e+00, 9.6494e-02, + 1DIAGNOSTIC, 15, -9.357302997191e-01, 6.411059072890e-04, 1.6298e+00, 1.0321e-01, + 1DIAGNOSTIC, 16, -9.364143119480e-01, 5.163701645783e-04, 1.7295e+00, 9.9719e-02, + 1DIAGNOSTIC, 17, -9.370052387586e-01, 4.177908652431e-04, 1.8245e+00, 9.5000e-02, + 1DIAGNOSTIC, 18, -9.375200126325e-01, 3.396930113070e-04, 1.9225e+00, 9.7972e-02, + 1DIAGNOSTIC, 19, -9.379755688865e-01, 2.769925013996e-04, 2.0181e+00, 9.5576e-02, + 1DIAGNOSTIC, 20, -9.384171488330e-01, 2.279333158256e-04, 2.1204e+00, 1.0239e-01, + 1DIAGNOSTIC, 21, -9.387676600615e-01, 1.881209793379e-04, 2.2127e+00, 9.2289e-02, + 1DIAGNOSTIC, 22, -9.390814305903e-01, 1.561264546674e-04, 2.3086e+00, 9.5863e-02, + 1DIAGNOSTIC, 23, -9.393580348962e-01, 1.309659202021e-04, 2.4072e+00, 9.8571e-02, + 1DIAGNOSTIC, 24, -9.395995535939e-01, 1.104179538204e-04, 2.5052e+00, 9.7996e-02, + 1DIAGNOSTIC, 25, -9.398102405264e-01, 9.338431738225e-05, 2.6017e+00, 9.6575e-02, + 1DIAGNOSTIC, 26, -9.399945381605e-01, 7.910237410768e-05, 2.7068e+00, 1.0511e-01, + 1DIAGNOSTIC, 27, -9.401564878565e-01, 6.698392996503e-05, 2.8032e+00, 9.6318e-02, + 1DIAGNOSTIC, 28, -9.402997891277e-01, 5.663225529343e-05, 2.9102e+00, 1.0701e-01, + 1DIAGNOSTIC, 29, -9.404272746213e-01, 4.781525996469e-05, 3.0193e+00, 1.0910e-01, + 1DIAGNOSTIC, 30, -9.405401373879e-01, 4.075607981353e-05, 3.1300e+00, 1.1069e-01, + 1DIAGNOSTIC, 31, -9.406385472169e-01, 3.476577144376e-05, 3.2352e+00, 1.0528e-01, + 1DIAGNOSTIC, 32, -9.407257426291e-01, 2.973404951249e-05, 3.3318e+00, 9.6560e-02, + 1DIAGNOSTIC, 33, -9.408024998958e-01, 2.551140000442e-05, 3.4250e+00, 9.3196e-02, + 1DIAGNOSTIC, 34, -9.408692729887e-01, 2.194075445031e-05, 3.5260e+00, 1.0105e-01, + 1DIAGNOSTIC, 35, -9.409280156655e-01, 1.889907498015e-05, 3.6236e+00, 9.7569e-02, + 1DIAGNOSTIC, 36, -9.409801118699e-01, 1.629501064243e-05, 3.7252e+00, 1.0154e-01, + 1DIAGNOSTIC, 37, -9.410253702722e-01, 1.405246658225e-05, 3.8266e+00, 1.0146e-01, + 1DIAGNOSTIC, 38, -9.410645117868e-01, 1.211765112405e-05, 3.9313e+00, 1.0469e-01, + 1DIAGNOSTIC, 39, -9.410981584029e-01, 1.045134448710e-05, 4.0353e+00, 1.0403e-01, + 1DIAGNOSTIC, 40, -9.411281258427e-01, 9.025075554340e-06, 4.1374e+00, 1.0210e-01, + 1DIAGNOSTIC, 41, -9.411551832177e-01, 7.804222687379e-06, 4.2437e+00, 1.0623e-01, + 1DIAGNOSTIC, 42, -9.411785798543e-01, 6.762746136743e-06, 4.3453e+00, 1.0166e-01, + 1DIAGNOSTIC, 43, -9.411940737255e-01, 5.841547441401e-06, 4.4465e+00, 1.0119e-01, + 1DIAGNOSTIC, 44, -9.412090463871e-01, 5.034716129830e-06, 4.5465e+00, 9.9988e-02, + 1DIAGNOSTIC, 45, -9.412921418477e-01, 4.804863736205e-06, 4.6514e+00, 1.0494e-01, + 1DIAGNOSTIC, 46, -9.413023655493e-01, 4.586523624915e-06, 4.7601e+00, 1.0862e-01, + 1DIAGNOSTIC, 47, -9.413104524107e-01, 4.351437517997e-06, 4.8649e+00, 1.0487e-01, + 1DIAGNOSTIC, 48, -9.413166885237e-01, 4.066514156732e-06, 4.9692e+00, 1.0429e-01, + 1DIAGNOSTIC, 49, -9.413213325204e-01, 3.700922186444e-06, 5.0673e+00, 9.8037e-02, + 1DIAGNOSTIC, 50, -9.413245888025e-01, 3.249846603257e-06, 5.1649e+00, 9.7623e-02, + 1DIAGNOSTIC, 51, -9.413266603606e-01, 2.735848213892e-06, 5.2668e+00, 1.0190e-01, + 1DIAGNOSTIC, 52, -9.413277728044e-01, 2.188317070557e-06, 5.3687e+00, 1.0191e-01, + 1DIAGNOSTIC, 53, -9.413282040004e-01, 1.605596603543e-06, 5.4683e+00, 9.9606e-02, + 1DIAGNOSTIC, 54, -9.413278215437e-01, 1.018115866662e-06, 5.5687e+00, 1.0036e-01, + 1DIAGNOSTIC, 55, -9.413266222981e-01, 8.628391791263e-07, 5.6702e+00, 1.0155e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.983296501974e-01, 1.797693134862e+308, 6.5106e+00, 8.4036e-01, + 1DIAGNOSTIC, 2, -9.028739175440e-01, 1.797693134862e+308, 7.1808e+00, 6.7025e-01, + 1DIAGNOSTIC, 3, -9.067610124179e-01, 1.797693134862e+308, 7.8409e+00, 6.6011e-01, + 1DIAGNOSTIC, 4, -9.094269953122e-01, 1.797693134862e+308, 8.5061e+00, 6.6516e-01, + 1DIAGNOSTIC, 5, -9.117630996180e-01, 1.797693134862e+308, 9.1804e+00, 6.7427e-01, + 1DIAGNOSTIC, 6, -9.138232999789e-01, 1.797693134862e+308, 9.8524e+00, 6.7208e-01, + 1DIAGNOSTIC, 7, -9.156262125802e-01, 1.797693134862e+308, 1.0530e+01, 6.7732e-01, + 1DIAGNOSTIC, 8, -9.172416738851e-01, 1.797693134862e+308, 1.1200e+01, 6.6984e-01, + 1DIAGNOSTIC, 9, -9.186956774629e-01, 1.797693134862e+308, 1.1881e+01, 6.8165e-01, + 1DIAGNOSTIC, 10, -9.199980056739e-01, 1.440155220758e-03, 1.2557e+01, 6.7569e-01, + 1DIAGNOSTIC, 11, -9.209745700997e-01, 1.108179865991e-03, 1.3237e+01, 6.7991e-01, + 1DIAGNOSTIC, 12, -9.219509741553e-01, 8.741972668979e-04, 1.3916e+01, 6.7963e-01, + 1DIAGNOSTIC, 13, -9.227403613054e-01, 7.085606168275e-04, 1.4595e+01, 6.7869e-01, + 1DIAGNOSTIC, 14, -9.234455634575e-01, 5.765569090837e-04, 1.5286e+01, 6.9072e-01, + 1DIAGNOSTIC, 15, -9.240988214025e-01, 4.710271340534e-04, 1.5995e+01, 7.0884e-01, + 1DIAGNOSTIC, 16, -9.246971585664e-01, 3.867912416497e-04, 1.6674e+01, 6.7884e-01, + 1DIAGNOSTIC, 17, -9.252409792027e-01, 3.194395401806e-04, 1.7363e+01, 6.8932e-01, + 1DIAGNOSTIC, 18, -9.257399265125e-01, 2.662536390804e-04, 1.8042e+01, 6.7925e-01, + 1DIAGNOSTIC, 19, -9.262019715228e-01, 2.250536918056e-04, 1.8717e+01, 6.7469e-01, + 1DIAGNOSTIC, 20, -9.266204052807e-01, 1.936311788693e-04, 1.9395e+01, 6.7823e-01, + 1DIAGNOSTIC, 21, -9.269995807958e-01, 1.670343461205e-04, 2.0062e+01, 6.6646e-01, + 1DIAGNOSTIC, 22, -9.273354897308e-01, 1.456712563706e-04, 2.0734e+01, 6.7261e-01, + 1DIAGNOSTIC, 23, -9.276583717757e-01, 1.274732846419e-04, 2.1412e+01, 6.7792e-01, + 1DIAGNOSTIC, 24, -9.279488868456e-01, 1.116486205770e-04, 2.2095e+01, 6.8329e-01, + 1DIAGNOSTIC, 25, -9.282243786034e-01, 9.808087530171e-05, 2.2774e+01, 6.7904e-01, + 1DIAGNOSTIC, 26, -9.284790294347e-01, 8.647444525260e-05, 2.3450e+01, 6.7543e-01, + 1DIAGNOSTIC, 27, -9.287146306035e-01, 7.651386364788e-05, 2.4128e+01, 6.7856e-01, + 1DIAGNOSTIC, 28, -9.289332447873e-01, 6.797904856021e-05, 2.4809e+01, 6.8113e-01, + 1DIAGNOSTIC, 29, -9.291361734244e-01, 6.071425606304e-05, 2.5474e+01, 6.6405e-01, + 1DIAGNOSTIC, 30, -9.293243104315e-01, 5.446226196614e-05, 2.6140e+01, 6.6675e-01, + 1DIAGNOSTIC, 31, -9.295029736448e-01, 4.904792325127e-05, 2.6812e+01, 6.7148e-01, + 1DIAGNOSTIC, 32, -9.296692964879e-01, 4.420185848927e-05, 2.7469e+01, 6.5695e-01, + 1DIAGNOSTIC, 33, -9.298161948061e-01, 3.988963149665e-05, 2.8136e+01, 6.6769e-01, + 1DIAGNOSTIC, 34, -9.299620245439e-01, 3.604646340946e-05, 2.8807e+01, 6.7034e-01, + 1DIAGNOSTIC, 35, -9.300990733779e-01, 3.267535135943e-05, 2.9484e+01, 6.7680e-01, + 1DIAGNOSTIC, 36, -9.302198340267e-01, 2.964313986245e-05, 3.0162e+01, 6.7893e-01, + 1DIAGNOSTIC, 37, -9.303313469604e-01, 2.689409026614e-05, 3.0842e+01, 6.7928e-01, + 1DIAGNOSTIC, 38, -9.304426526990e-01, 2.445467517793e-05, 3.1513e+01, 6.7109e-01, + 1DIAGNOSTIC, 39, -9.305526399744e-01, 2.233010397399e-05, 3.2188e+01, 6.7492e-01, + 1DIAGNOSTIC, 40, -9.306577943138e-01, 2.048721292581e-05, 3.2866e+01, 6.7783e-01, + 1DIAGNOSTIC, 41, -9.307562551631e-01, 1.891032229585e-05, 3.3545e+01, 6.7952e-01, + 1DIAGNOSTIC, 42, -9.308504523102e-01, 1.756652043496e-05, 3.4225e+01, 6.7954e-01, + 1DIAGNOSTIC, 43, -9.309549373129e-01, 1.645671265646e-05, 3.4913e+01, 6.8792e-01, + 1DIAGNOSTIC, 44, -9.310414937198e-01, 1.549525641305e-05, 3.5598e+01, 6.8513e-01, + 1DIAGNOSTIC, 45, -9.311241661750e-01, 1.464862255669e-05, 3.6264e+01, 6.6619e-01, + 1DIAGNOSTIC, 46, -9.312033524559e-01, 1.382795616331e-05, 3.6938e+01, 6.7436e-01, + 1DIAGNOSTIC, 47, -9.312796453044e-01, 1.299828335324e-05, 3.7600e+01, 6.6156e-01, + 1DIAGNOSTIC, 48, -9.313497593778e-01, 1.216882112105e-05, 3.8269e+01, 6.6879e-01, + 1DIAGNOSTIC, 49, -9.314207578945e-01, 1.139238674435e-05, 3.8986e+01, 7.1739e-01, + 1DIAGNOSTIC, 50, -9.314884887432e-01, 1.066834680479e-05, 3.9681e+01, 6.9517e-01, + 1DIAGNOSTIC, 51, -9.315546718425e-01, 9.991640266934e-06, 4.0347e+01, 6.6626e-01, + 1DIAGNOSTIC, 52, -9.316151215027e-01, 9.342405413101e-06, 4.1017e+01, 6.6953e-01, + 1DIAGNOSTIC, 53, -9.316701149363e-01, 8.794378021305e-06, 4.1691e+01, 6.7386e-01, + 1DIAGNOSTIC, 54, -9.317273235998e-01, 8.288711365743e-06, 4.2373e+01, 6.8249e-01, + 1DIAGNOSTIC, 55, -9.317828640572e-01, 7.823783654767e-06, 4.3064e+01, 6.9033e-01, + 1DIAGNOSTIC, 56, -9.318365918604e-01, 7.398816341670e-06, 4.3734e+01, 6.7041e-01, + 1DIAGNOSTIC, 57, -9.318878624816e-01, 7.011957077134e-06, 4.4402e+01, 6.6786e-01, + 1DIAGNOSTIC, 58, -9.319371800338e-01, 6.643012632934e-06, 4.5066e+01, 6.6389e-01, + 1DIAGNOSTIC, 59, -9.319845439126e-01, 6.309115100078e-06, 4.5743e+01, 6.7687e-01, + 1DIAGNOSTIC, 60, -9.320299123989e-01, 6.002317259439e-06, 4.6410e+01, 6.6707e-01, + 1DIAGNOSTIC, 61, -9.320738557653e-01, 5.726580956440e-06, 4.7078e+01, 6.6818e-01, + 1DIAGNOSTIC, 62, -9.321097601166e-01, 5.430224513634e-06, 4.7753e+01, 6.7522e-01, + 1DIAGNOSTIC, 63, -9.321513142599e-01, 5.135326514912e-06, 4.8432e+01, 6.7920e-01, + 1DIAGNOSTIC, 64, -9.321915002251e-01, 4.864735473217e-06, 4.9112e+01, 6.7929e-01, + 1DIAGNOSTIC, 65, -9.322309346968e-01, 4.624253084260e-06, 4.9779e+01, 6.6693e-01, + 1DIAGNOSTIC, 66, -9.322680514426e-01, 4.410032761307e-06, 5.0476e+01, 6.9711e-01, + 1DIAGNOSTIC, 67, -9.323044237545e-01, 4.220795772347e-06, 5.1144e+01, 6.6838e-01, + 1DIAGNOSTIC, 68, -9.323399993742e-01, 4.054576124200e-06, 5.1815e+01, 6.7145e-01, + 1DIAGNOSTIC, 69, -9.323744782205e-01, 3.906327768598e-06, 5.2506e+01, 6.9093e-01, + 1DIAGNOSTIC, 70, -9.324073302586e-01, 3.768324929421e-06, 5.3192e+01, 6.8580e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.730574448518e-01, 1.797693134862e+308, 5.8815e+01, 5.6231e+00, + 1DIAGNOSTIC, 2, -8.762423173859e-01, 1.797693134862e+308, 6.4175e+01, 5.3593e+00, + 1DIAGNOSTIC, 3, -8.797958950733e-01, 1.797693134862e+308, 6.9598e+01, 5.4230e+00, + 1DIAGNOSTIC, 4, -8.831600119233e-01, 1.797693134862e+308, 7.4985e+01, 5.3872e+00, + 1DIAGNOSTIC, 5, -8.860265383144e-01, 1.797693134862e+308, 8.0395e+01, 5.4103e+00, + 1DIAGNOSTIC, 6, -8.884963823602e-01, 1.797693134862e+308, 8.5766e+01, 5.3706e+00, + 1DIAGNOSTIC, 7, -8.906669847151e-01, 1.797693134862e+308, 9.1191e+01, 5.4250e+00, + 1DIAGNOSTIC, 8, -8.926151920195e-01, 1.797693134862e+308, 9.6561e+01, 5.3705e+00, + 1DIAGNOSTIC, 9, -8.944100045517e-01, 1.797693134862e+308, 1.0199e+02, 5.4302e+00, + 1DIAGNOSTIC, 10, -8.959451472792e-01, 1.660644073705e-03, 1.0740e+02, 5.4086e+00, + 1DIAGNOSTIC, 11, -8.973796147964e-01, 1.359568200119e-03, 1.1289e+02, 5.4942e+00, + 1DIAGNOSTIC, 12, -8.987671235605e-01, 1.107866197435e-03, 1.1830e+02, 5.4051e+00, + 1DIAGNOSTIC, 13, -9.000016420968e-01, 9.116473685275e-04, 1.2384e+02, 5.5447e+00, + 1DIAGNOSTIC, 14, -9.012259312322e-01, 7.646212173306e-04, 1.2926e+02, 5.4120e+00, + 1DIAGNOSTIC, 15, -9.024022330038e-01, 6.528169253627e-04, 1.3469e+02, 5.4348e+00, + 1DIAGNOSTIC, 16, -9.035066131169e-01, 5.658546749929e-04, 1.4010e+02, 5.4097e+00, + 1DIAGNOSTIC, 17, -9.044905045488e-01, 4.957121902040e-04, 1.4554e+02, 5.4410e+00, + 1DIAGNOSTIC, 18, -9.053689529096e-01, 4.372038406983e-04, 1.5094e+02, 5.3946e+00, + 1DIAGNOSTIC, 19, -9.061638755701e-01, 3.874600108525e-04, 1.5638e+02, 5.4463e+00, + 1DIAGNOSTIC, 20, -9.068904232581e-01, 3.423983266636e-04, 1.6178e+02, 5.4019e+00, + 1DIAGNOSTIC, 21, -9.075571583503e-01, 3.012927427830e-04, 1.6722e+02, 5.4326e+00, + 1DIAGNOSTIC, 22, -9.081679254817e-01, 2.644918974691e-04, 1.7265e+02, 5.4286e+00, + 1DIAGNOSTIC, 23, -9.087361109808e-01, 2.308880441727e-04, 1.7806e+02, 5.4133e+00, + 1DIAGNOSTIC, 24, -9.092661555166e-01, 2.014984462859e-04, 1.8347e+02, 5.4065e+00, + 1DIAGNOSTIC, 25, -9.097667852837e-01, 1.766780233619e-04, 1.8888e+02, 5.4135e+00, + 1DIAGNOSTIC, 26, -9.102365057379e-01, 1.562312946207e-04, 1.9427e+02, 5.3869e+00, + 1DIAGNOSTIC, 27, -9.106813395286e-01, 1.392647634190e-04, 1.9965e+02, 5.3857e+00, + 1DIAGNOSTIC, 28, -9.111064452207e-01, 1.250514573023e-04, 2.0515e+02, 5.4977e+00, + 1DIAGNOSTIC, 29, -9.115161345524e-01, 1.131016641096e-04, 2.1061e+02, 5.4574e+00, + 1DIAGNOSTIC, 30, -9.119102811197e-01, 1.030285346679e-04, 2.1604e+02, 5.4300e+00, + 1DIAGNOSTIC, 31, -9.122932679873e-01, 9.452852004684e-05, 2.2148e+02, 5.4481e+00, + 1DIAGNOSTIC, 32, -9.126643512635e-01, 8.727666155712e-05, 2.2689e+02, 5.4060e+00, + 1DIAGNOSTIC, 33, -9.130342518949e-01, 8.114990547110e-05, 2.3231e+02, 5.4198e+00, + 1DIAGNOSTIC, 34, -9.133800795892e-01, 7.579939876497e-05, 2.3771e+02, 5.4031e+00, + 1DIAGNOSTIC, 35, -9.137088779296e-01, 7.102799154276e-05, 2.4316e+02, 5.4506e+00, + 1DIAGNOSTIC, 36, -9.140246281365e-01, 6.665314920543e-05, 2.4862e+02, 5.4597e+00, + 1DIAGNOSTIC, 37, -9.143204073053e-01, 6.248777303816e-05, 2.5404e+02, 5.4119e+00, + 1DIAGNOSTIC, 38, -9.146002436956e-01, 5.844542015188e-05, 2.5945e+02, 5.4123e+00, + 1DIAGNOSTIC, 39, -9.148635940535e-01, 5.449028472204e-05, 2.6491e+02, 5.4614e+00, + 1DIAGNOSTIC, 40, -9.151115881919e-01, 5.060929309040e-05, 2.7033e+02, 5.4212e+00, + 1DIAGNOSTIC, 41, -9.153426068656e-01, 4.682184629324e-05, 2.7573e+02, 5.4019e+00, + 1DIAGNOSTIC, 42, -9.155648354058e-01, 4.320804379264e-05, 2.8118e+02, 5.4497e+00, + 1DIAGNOSTIC, 43, -9.157729008870e-01, 3.988426407888e-05, 2.8661e+02, 5.4317e+00, + 1DIAGNOSTIC, 44, -9.159713660316e-01, 3.681339570749e-05, 2.9201e+02, 5.3949e+00, + 1DIAGNOSTIC, 45, -9.161592025904e-01, 3.399266198028e-05, 2.9743e+02, 5.4204e+00, + 1DIAGNOSTIC, 46, -9.163364020022e-01, 3.143747959946e-05, 3.0286e+02, 5.4346e+00, + 1DIAGNOSTIC, 47, -9.165048015308e-01, 2.911337838385e-05, 3.0827e+02, 5.4069e+00, + 1DIAGNOSTIC, 48, -9.166634749385e-01, 2.699732598303e-05, 3.1366e+02, 5.3853e+00, + 1DIAGNOSTIC, 49, -9.168124395391e-01, 2.505476426277e-05, 3.1908e+02, 5.4267e+00, + 1DIAGNOSTIC, 50, -9.169540577476e-01, 2.326806476636e-05, 3.2454e+02, 5.4605e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.794833074426e-01, 1.797693134862e+308, 3.7029e+02, 4.5746e+01, + 1DIAGNOSTIC, 2, -8.810497027085e-01, 1.797693134862e+308, 4.1434e+02, 4.4050e+01, + 1DIAGNOSTIC, 3, -8.827541211041e-01, 1.797693134862e+308, 4.5851e+02, 4.4169e+01, + 1DIAGNOSTIC, 4, -8.845131389166e-01, 1.797693134862e+308, 5.0229e+02, 4.3784e+01, + 1DIAGNOSTIC, 5, -8.861611625943e-01, 1.797693134862e+308, 5.4642e+02, 4.4126e+01, + 1DIAGNOSTIC, 6, -8.877418363599e-01, 1.797693134862e+308, 5.9056e+02, 4.4138e+01, + 1DIAGNOSTIC, 7, -8.892837484925e-01, 1.797693134862e+308, 6.3428e+02, 4.3720e+01, + 1DIAGNOSTIC, 8, -8.906350053742e-01, 1.797693134862e+308, 6.7908e+02, 4.4802e+01, + 1DIAGNOSTIC, 9, -8.918270852055e-01, 1.797693134862e+308, 7.2302e+02, 4.3942e+01, + 1DIAGNOSTIC, 10, -8.929236454383e-01, 9.929410063523e-04, 7.6693e+02, 4.3912e+01, + 1DIAGNOSTIC, 11, -8.938641925833e-01, 8.525107194422e-04, 8.1115e+02, 4.4215e+01, + 1DIAGNOSTIC, 12, -8.948820923419e-01, 7.275249271461e-04, 8.5569e+02, 4.4544e+01, + 1DIAGNOSTIC, 13, -8.957203486532e-01, 6.180901557465e-04, 8.9993e+02, 4.4242e+01, + 1DIAGNOSTIC, 14, -8.966644122261e-01, 5.295480697325e-04, 9.4433e+02, 4.4400e+01, + 1DIAGNOSTIC, 15, -8.974319801259e-01, 4.555466861143e-04, 9.8851e+02, 4.4175e+01, + 1DIAGNOSTIC, 16, -8.981366303643e-01, 3.943163971184e-04, 1.0326e+03, 4.4087e+01, + 1DIAGNOSTIC, 17, -8.988000507582e-01, 3.451464706999e-04, 1.0767e+03, 4.4071e+01, + 1DIAGNOSTIC, 18, -8.994199034683e-01, 3.042590924653e-04, 1.1209e+03, 4.4199e+01, + 1DIAGNOSTIC, 19, -8.999822401981e-01, 2.687234474077e-04, 1.1660e+03, 4.5139e+01, + 1DIAGNOSTIC, 20, -9.005224616707e-01, 2.377503014639e-04, 1.2108e+03, 4.4778e+01, + Elapsed time (stage 2): 1211 + + +Total elapsed time: 1262 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:26 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-T1map_to-fsnative_InverseWarped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:26 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:29 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:34 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:37 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:37 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29808 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:38 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:41 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:42 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29853 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:42 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:45 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:45 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29908 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:45 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29913 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:45 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:49 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:51 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:51 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:52 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:53 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:56 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:56 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:57 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:58 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:00 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:00 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:00 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:00 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:01 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:01 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:01 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:01 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:10 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:21 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC006 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:22 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC006 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:22 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC006 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:23 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30532 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:24 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:24 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30561 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:26 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:26 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC006_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 71.367 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/logs/proc_func_18-03-2024-15655.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:31 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC006 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/QC/sub-PNC006_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC006* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 71.433 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC006_ses-01 +========================reprocessing without filter=================== +sub-PNC006_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC006 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC006 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC006 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC006 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:36 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:36 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:57:51 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:00:06 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:00:20 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.33 (mm) at sub-brick 5 +++ Max delta displ in automask = 0.37 (mm) at sub-brick 61 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:14:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:14:28 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:16:55 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:19:25 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:22:05 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.186 -2.074 2.323 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 80.8 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.256 -2.528 4.196 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 80.9 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:27:37 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:28:12 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55a97bb0e6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.8983, 1.9] + Origin: [106.561, 52.5788, -110.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.8983 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a97b985730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a97bb25320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55a97bb11fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [81.4958, 113.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a97bb17e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a97c322230 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55a97c3205c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.8983, 1.9] + Origin: [106.561, 52.5788, -110.503] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.8983 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a97bb143f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a97cf5c450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55a97c31eda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [81.4958, 113.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a97bb1b360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a97d756780 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.262723288161e-01, 1.797693134862e+308, 6.2472e-02, 6.2472e-02, + 2DIAGNOSTIC, 2, -5.281181101659e-01, 1.797693134862e+308, 6.4425e-02, 1.9529e-03, + 2DIAGNOSTIC, 3, -5.304561489522e-01, 1.797693134862e+308, 7.0057e-02, 5.6319e-03, + 2DIAGNOSTIC, 4, -5.332998032835e-01, 1.797693134862e+308, 7.1631e-02, 1.5740e-03, + 2DIAGNOSTIC, 5, -5.413960634636e-01, 1.797693134862e+308, 7.3289e-02, 1.6582e-03, + 2DIAGNOSTIC, 6, -5.500972863116e-01, 1.797693134862e+308, 7.4858e-02, 1.5690e-03, + 2DIAGNOSTIC, 7, -5.644739290189e-01, 1.797693134862e+308, 7.8304e-02, 3.4461e-03, + 2DIAGNOSTIC, 8, -6.023645961404e-01, 1.797693134862e+308, 8.0541e-02, 2.2371e-03, + 2DIAGNOSTIC, 9, -6.069922160167e-01, 1.797693134862e+308, 8.2139e-02, 1.5972e-03, + 2DIAGNOSTIC, 10, -6.153788173715e-01, 1.139895246892e-02, 8.4407e-02, 2.2681e-03, + 2DIAGNOSTIC, 11, -6.197329800282e-01, 1.135475996837e-02, 8.6487e-02, 2.0800e-03, + 2DIAGNOSTIC, 12, -6.205247066478e-01, 1.040616986501e-02, 8.8583e-02, 2.0969e-03, + 2DIAGNOSTIC, 13, -6.230304309279e-01, 8.849306251900e-03, 9.0178e-02, 1.5950e-03, + 2DIAGNOSTIC, 14, -6.234984860282e-01, 6.844957992452e-03, 9.1894e-02, 1.7152e-03, + 2DIAGNOSTIC, 15, -6.241068251766e-01, 4.802870677353e-03, 9.3841e-02, 1.9469e-03, + 2DIAGNOSTIC, 16, -6.247035374240e-01, 2.879883666015e-03, 9.5364e-02, 1.5230e-03, + 2DIAGNOSTIC, 17, -6.256674071131e-01, 1.345265938843e-03, 1.0101e-01, 5.6441e-03, + 2DIAGNOSTIC, 18, -6.277053381953e-01, 9.397761335675e-04, 1.0325e-01, 2.2430e-03, + 2DIAGNOSTIC, 19, -6.287266858368e-01, 6.302892075913e-04, 1.0494e-01, 1.6870e-03, + 2DIAGNOSTIC, 20, -6.279282875859e-01, 4.756787966332e-04, 1.0687e-01, 1.9321e-03, + 2DIAGNOSTIC, 21, -6.281017162433e-01, 3.973102140310e-04, 1.0914e-01, 2.2690e-03, + 2DIAGNOSTIC, 22, -6.286932489482e-01, 3.178553448113e-04, 1.1170e-01, 2.5630e-03, + 2DIAGNOSTIC, 23, -6.282855340437e-01, 2.582218191653e-04, 1.1360e-01, 1.8959e-03, + 2DIAGNOSTIC, 24, -6.283396526483e-01, 1.902292097487e-04, 1.1573e-01, 2.1350e-03, + 2DIAGNOSTIC, 25, -6.283984584821e-01, 1.236499180345e-04, 1.1774e-01, 2.0089e-03, + 2DIAGNOSTIC, 26, -6.284894869848e-01, 6.353252563416e-05, 1.1978e-01, 2.0368e-03, + 2DIAGNOSTIC, 27, -6.286029426469e-01, 1.985169384264e-05, 1.2306e-01, 3.2828e-03, + 2DIAGNOSTIC, 28, -6.286199067273e-01, 1.173398969759e-05, 1.2513e-01, 2.0711e-03, + 2DIAGNOSTIC, 29, -6.286343658021e-01, 2.063358727736e-05, 1.2714e-01, 2.0039e-03, + 2DIAGNOSTIC, 30, -6.286824071824e-01, 1.524344004369e-05, 1.2913e-01, 1.9960e-03, + 2DIAGNOSTIC, 31, -6.287539725000e-01, 1.222448129510e-05, 1.3117e-01, 2.0349e-03, + 2DIAGNOSTIC, 32, -6.293065411745e-01, 2.525970560552e-05, 1.3450e-01, 3.3281e-03, + 2DIAGNOSTIC, 33, -6.293226678206e-01, 2.941710560730e-05, 1.3620e-01, 1.7059e-03, + 2DIAGNOSTIC, 34, -6.293517983711e-01, 3.188403221407e-05, 1.3783e-01, 1.6251e-03, + 2DIAGNOSTIC, 35, -6.294061579775e-01, 3.286589040938e-05, 1.3990e-01, 2.0759e-03, + 2DIAGNOSTIC, 36, -6.294123259908e-01, 3.192566430998e-05, 1.4154e-01, 1.6339e-03, + 2DIAGNOSTIC, 37, -6.294423294334e-01, 2.979485519387e-05, 1.4307e-01, 1.5380e-03, + 2DIAGNOSTIC, 38, -6.294855516992e-01, 2.575500850561e-05, 1.4594e-01, 2.8651e-03, + 2DIAGNOSTIC, 39, -6.294908080254e-01, 1.987736920104e-05, 1.4788e-01, 1.9410e-03, + 2DIAGNOSTIC, 40, -6.294988985779e-01, 1.319642353893e-05, 1.5000e-01, 2.1150e-03, + 2DIAGNOSTIC, 41, -6.295180081592e-01, 6.528806844392e-06, 1.5172e-01, 1.7231e-03, + 2DIAGNOSTIC, 42, -6.295812331011e-01, 6.452967817955e-06, 1.5368e-01, 1.9600e-03, + 2DIAGNOSTIC, 43, -6.296852067832e-01, 7.110546440162e-06, 1.5629e-01, 2.6100e-03, + 2DIAGNOSTIC, 44, -6.299542403761e-01, 1.024250592980e-05, 1.5897e-01, 2.6801e-03, + 2DIAGNOSTIC, 45, -6.297169984275e-01, 1.038949989325e-05, 1.6162e-01, 2.6529e-03, + 2DIAGNOSTIC, 46, -6.297233661407e-01, 9.841776572202e-06, 1.6360e-01, 1.9829e-03, + 2DIAGNOSTIC, 47, -6.297677571893e-01, 9.165526564967e-06, 1.6631e-01, 2.7020e-03, + 2DIAGNOSTIC, 48, -6.297721757556e-01, 8.091628994972e-06, 1.7269e-01, 6.3820e-03, + 2DIAGNOSTIC, 49, -6.297722998081e-01, 6.380164607092e-06, 1.7553e-01, 2.8400e-03, + 2DIAGNOSTIC, 50, -6.297723095119e-01, 4.318571502786e-06, 1.7858e-01, 3.0529e-03, + 2DIAGNOSTIC, 51, -6.297723105898e-01, 2.202600855809e-06, 1.8129e-01, 2.7130e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -2.858361139847e-01, 1.797693134862e+308, 2.3871e-01, 5.7414e-02, + 2DIAGNOSTIC, 2, -2.853341641718e-01, 1.797693134862e+308, 2.4170e-01, 2.9869e-03, + 2DIAGNOSTIC, 3, -2.872512156382e-01, 1.797693134862e+308, 2.4448e-01, 2.7821e-03, + 2DIAGNOSTIC, 4, -2.898489215596e-01, 1.797693134862e+308, 2.4739e-01, 2.9130e-03, + 2DIAGNOSTIC, 5, -2.925781589222e-01, 1.797693134862e+308, 2.5030e-01, 2.9130e-03, + 2DIAGNOSTIC, 6, -2.991338685892e-01, 1.797693134862e+308, 2.5313e-01, 2.8300e-03, + 2DIAGNOSTIC, 7, -3.064741497384e-01, 1.797693134862e+308, 2.5601e-01, 2.8770e-03, + 2DIAGNOSTIC, 8, -3.407303777624e-01, 1.797693134862e+308, 2.5892e-01, 2.9070e-03, + 2DIAGNOSTIC, 9, -3.494321865417e-01, 1.797693134862e+308, 2.6249e-01, 3.5729e-03, + 2DIAGNOSTIC, 10, -3.605185086879e-01, 1.625244510377e-02, 2.6778e-01, 5.2860e-03, + 2DIAGNOSTIC, 11, -3.906476524865e-01, 1.913967374805e-02, 2.7087e-01, 3.0930e-03, + 2DIAGNOSTIC, 12, -4.011020138998e-01, 2.037458201004e-02, 2.7660e-01, 5.7311e-03, + 2DIAGNOSTIC, 13, -4.048459604434e-01, 1.990815234652e-02, 2.7956e-01, 2.9628e-03, + 2DIAGNOSTIC, 14, -4.053100208776e-01, 1.794519476360e-02, 2.8254e-01, 2.9800e-03, + 2DIAGNOSTIC, 15, -4.109511903870e-01, 1.514587329238e-02, 2.8622e-01, 3.6800e-03, + 2DIAGNOSTIC, 16, -4.212242334050e-01, 1.221838412970e-02, 2.9048e-01, 4.2520e-03, + 2DIAGNOSTIC, 17, -4.215451336455e-01, 8.901995293077e-03, 2.9415e-01, 3.6712e-03, + 2DIAGNOSTIC, 18, -4.234970398855e-01, 6.844894854511e-03, 2.9779e-01, 3.6399e-03, + 2DIAGNOSTIC, 19, -4.246866934288e-01, 4.841019840899e-03, 3.0157e-01, 3.7868e-03, + 2DIAGNOSTIC, 20, -4.264503925529e-01, 3.099697498383e-03, 3.0499e-01, 3.4120e-03, + 2DIAGNOSTIC, 21, -4.273031864909e-01, 2.399869169119e-03, 3.0840e-01, 3.4130e-03, + 2DIAGNOSTIC, 22, -4.274754627240e-01, 1.923946904336e-03, 3.1125e-01, 2.8501e-03, + 2DIAGNOSTIC, 23, -4.275445985705e-01, 1.451870796095e-03, 3.1423e-01, 2.9809e-03, + 2DIAGNOSTIC, 24, -4.276505210411e-01, 9.063268100632e-04, 3.1726e-01, 3.0270e-03, + 2DIAGNOSTIC, 25, -4.278805931558e-01, 4.953378324180e-04, 3.2107e-01, 3.8140e-03, + 2DIAGNOSTIC, 26, -4.277950238506e-01, 3.699512678824e-04, 3.2395e-01, 2.8801e-03, + 2DIAGNOSTIC, 27, -4.279812017878e-01, 2.342726595678e-04, 3.2718e-01, 3.2289e-03, + 2DIAGNOSTIC, 28, -4.281114047587e-01, 1.430973558368e-04, 3.3070e-01, 3.5219e-03, + 2DIAGNOSTIC, 29, -4.281608670230e-01, 7.631490532786e-05, 3.3720e-01, 6.4950e-03, + 2DIAGNOSTIC, 30, -4.281921203585e-01, 5.122687351894e-05, 3.4042e-01, 3.2239e-03, + 2DIAGNOSTIC, 31, -4.282480170855e-01, 4.484462725311e-05, 3.4426e-01, 3.8412e-03, + 2DIAGNOSTIC, 32, -4.282614102541e-01, 3.903085781739e-05, 3.4720e-01, 2.9399e-03, + 2DIAGNOSTIC, 33, -4.282430679133e-01, 3.106175570786e-05, 3.5007e-01, 2.8729e-03, + 2DIAGNOSTIC, 34, -4.282667076498e-01, 2.346015361804e-05, 3.5644e-01, 6.3629e-03, + 2DIAGNOSTIC, 35, -4.284701692671e-01, 2.334761312369e-05, 3.5990e-01, 3.4602e-03, + 2DIAGNOSTIC, 36, -4.286319411974e-01, 2.246063796314e-05, 3.6455e-01, 4.6520e-03, + 2DIAGNOSTIC, 37, -4.287096403023e-01, 2.466263562278e-05, 3.6808e-01, 3.5350e-03, + 2DIAGNOSTIC, 38, -4.285921741099e-01, 2.478574332371e-05, 3.7113e-01, 3.0441e-03, + 2DIAGNOSTIC, 39, -4.285951252429e-01, 2.370962041128e-05, 3.7442e-01, 3.2959e-03, + 2DIAGNOSTIC, 40, -4.286090610950e-01, 2.122365471895e-05, 3.7786e-01, 3.4351e-03, + 2DIAGNOSTIC, 41, -4.286164259280e-01, 1.792862508947e-05, 3.8145e-01, 3.5889e-03, + 2DIAGNOSTIC, 42, -4.285813404126e-01, 1.284994719606e-05, 3.8494e-01, 3.4881e-03, + 2DIAGNOSTIC, 43, -4.286218813271e-01, 7.371698536103e-06, 3.8798e-01, 3.0448e-03, + 2DIAGNOSTIC, 44, -4.286294999620e-01, 1.981309055082e-06, 3.9101e-01, 3.0310e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.206500387258e-01, 1.797693134862e+308, 4.7725e-01, 8.6238e-02, + 2DIAGNOSTIC, 2, -3.211893284186e-01, 1.797693134862e+308, 4.9309e-01, 1.5836e-02, + 2DIAGNOSTIC, 3, -3.222699990735e-01, 1.797693134862e+308, 5.0727e-01, 1.4185e-02, + 2DIAGNOSTIC, 4, -3.245202899469e-01, 1.797693134862e+308, 5.2199e-01, 1.4720e-02, + 2DIAGNOSTIC, 5, -3.259683900461e-01, 1.797693134862e+308, 5.3932e-01, 1.7333e-02, + 2DIAGNOSTIC, 6, -3.283886105103e-01, 1.797693134862e+308, 5.5433e-01, 1.5009e-02, + 2DIAGNOSTIC, 7, -3.343640542512e-01, 1.797693134862e+308, 5.6958e-01, 1.5244e-02, + 2DIAGNOSTIC, 8, -3.391102387451e-01, 1.797693134862e+308, 5.8531e-01, 1.5735e-02, + 2DIAGNOSTIC, 9, -3.483606844982e-01, 1.797693134862e+308, 6.0137e-01, 1.6056e-02, + 2DIAGNOSTIC, 10, -3.715739272732e-01, 7.795738503945e-03, 6.2522e-01, 2.3850e-02, + 2DIAGNOSTIC, 11, -3.758926895593e-01, 9.315178717569e-03, 6.4085e-01, 1.5635e-02, + 2DIAGNOSTIC, 12, -3.931892602839e-01, 1.093554930841e-02, 6.5672e-01, 1.5870e-02, + 2DIAGNOSTIC, 13, -4.260913614804e-01, 1.333285819620e-02, 6.7624e-01, 1.9515e-02, + 2DIAGNOSTIC, 14, -4.424535305148e-01, 1.509535339925e-02, 7.0154e-01, 2.5304e-02, + 2DIAGNOSTIC, 15, -4.485741388682e-01, 1.558573402061e-02, 7.1871e-01, 1.7170e-02, + 2DIAGNOSTIC, 16, -4.621057386884e-01, 1.534805578679e-02, 7.3711e-01, 1.8396e-02, + 2DIAGNOSTIC, 17, -4.684450404626e-01, 1.428484410919e-02, 7.5245e-01, 1.5340e-02, + 2DIAGNOSTIC, 18, -4.700280022231e-01, 1.230591774836e-02, 7.7448e-01, 2.2033e-02, + 2DIAGNOSTIC, 19, -4.704637358467e-01, 9.813419882806e-03, 7.8656e-01, 1.2075e-02, + 2DIAGNOSTIC, 20, -4.714639043716e-01, 7.625674635550e-03, 8.0289e-01, 1.6335e-02, + 2DIAGNOSTIC, 21, -4.717818429465e-01, 5.141518564823e-03, 8.1791e-01, 1.5018e-02, + 2DIAGNOSTIC, 22, -4.717824379565e-01, 2.989393151042e-03, 8.3123e-01, 1.3319e-02, + 2DIAGNOSTIC, 23, -4.718364042781e-01, 1.795089460294e-03, 8.4476e-01, 1.3533e-02, + 2DIAGNOSTIC, 24, -4.722438379208e-01, 1.046713171254e-03, 8.7851e-01, 3.3747e-02, + 2DIAGNOSTIC, 25, -4.723614168557e-01, 4.369003694390e-04, 8.9070e-01, 1.2189e-02, + 2DIAGNOSTIC, 26, -4.724116431516e-01, 2.006508204117e-04, 9.0866e-01, 1.7967e-02, + 2DIAGNOSTIC, 27, -4.724678132855e-01, 1.296280617482e-04, 9.2082e-01, 1.2159e-02, + 2DIAGNOSTIC, 28, -4.725105773574e-01, 9.249556149027e-05, 9.3288e-01, 1.2054e-02, + 2DIAGNOSTIC, 29, -4.726646488953e-01, 6.290600048955e-05, 9.4487e-01, 1.1991e-02, + 2DIAGNOSTIC, 30, -4.738976438851e-01, 8.022993114091e-05, 9.5993e-01, 1.5058e-02, + 2DIAGNOSTIC, 31, -4.741295722642e-01, 1.003032848938e-04, 9.7318e-01, 1.3258e-02, + 2DIAGNOSTIC, 32, -4.741749787496e-01, 1.108885037706e-04, 9.8791e-01, 1.4726e-02, + 2DIAGNOSTIC, 33, -4.741328851782e-01, 1.108413340384e-04, 1.0011e+00, 1.3166e-02, + 2DIAGNOSTIC, 34, -4.742517477254e-01, 1.107383653825e-04, 1.0160e+00, 1.4921e-02, + 2DIAGNOSTIC, 35, -4.742997959339e-01, 1.029351588933e-04, 1.0314e+00, 1.5368e-02, + 2DIAGNOSTIC, 36, -4.742597422641e-01, 8.599551617109e-05, 1.0447e+00, 1.3353e-02, + 2DIAGNOSTIC, 37, -4.742553532405e-01, 6.334938287352e-05, 1.0561e+00, 1.1355e-02, + 2DIAGNOSTIC, 38, -4.742541782886e-01, 3.708038029566e-05, 1.0679e+00, 1.1795e-02, + 2DIAGNOSTIC, 39, -4.742560840102e-01, 1.092188459862e-05, 1.0814e+00, 1.3499e-02, + 2DIAGNOSTIC, 40, -4.742632488063e-01, 5.572418566573e-06, 1.0929e+00, 1.1532e-02, + 2DIAGNOSTIC, 41, -4.742623009103e-01, 3.777162264525e-06, 1.1047e+00, 1.1815e-02, + 2DIAGNOSTIC, 42, -4.742665857406e-01, 2.633122297688e-06, 1.1204e+00, 1.5671e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.035854754531e-01, 1.797693134862e+308, 1.3069e+00, 1.8647e-01, + Elapsed time (stage 0): 1.3562e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.728030477685e-01, 1.797693134862e+308, 3.4094e-02, 3.4094e-02, + 2DIAGNOSTIC, 2, -8.745140233811e-01, 1.797693134862e+308, 3.5279e-02, 1.1849e-03, + 2DIAGNOSTIC, 3, -8.768671535174e-01, 1.797693134862e+308, 3.6388e-02, 1.1089e-03, + 2DIAGNOSTIC, 4, -8.861175916625e-01, 1.797693134862e+308, 3.7526e-02, 1.1382e-03, + 2DIAGNOSTIC, 5, -9.133523276434e-01, 1.797693134862e+308, 3.8663e-02, 1.1370e-03, + 2DIAGNOSTIC, 6, -9.727447471297e-01, 1.797693134862e+308, 3.9793e-02, 1.1299e-03, + 2DIAGNOSTIC, 7, -9.946230828269e-01, 1.797693134862e+308, 4.1110e-02, 1.3168e-03, + 2DIAGNOSTIC, 8, -1.048391361911e+00, 1.797693134862e+308, 4.2933e-02, 1.8229e-03, + 2DIAGNOSTIC, 9, -1.053282721777e+00, 1.797693134862e+308, 4.4949e-02, 2.0161e-03, + 2DIAGNOSTIC, 10, -1.056964096054e+00, 1.551591508624e-02, 4.6942e-02, 1.9939e-03, + 2DIAGNOSTIC, 11, -1.059455379969e+00, 1.410208630589e-02, 4.9106e-02, 2.1632e-03, + 2DIAGNOSTIC, 12, -1.064100643648e+00, 1.183504160778e-02, 5.1008e-02, 1.9019e-03, + 2DIAGNOSTIC, 13, -1.070309165025e+00, 9.072306047771e-03, 5.3754e-02, 2.7461e-03, + 2DIAGNOSTIC, 14, -1.072934566732e+00, 6.160637933297e-03, 5.5332e-02, 1.5781e-03, + 2DIAGNOSTIC, 15, -1.076529963679e+00, 3.686225785098e-03, 5.6664e-02, 1.3318e-03, + 2DIAGNOSTIC, 16, -1.077212346054e+00, 2.279444502774e-03, 5.8333e-02, 1.6692e-03, + 2DIAGNOSTIC, 17, -1.079939893620e+00, 1.227328461377e-03, 5.9753e-02, 1.4200e-03, + 2DIAGNOSTIC, 18, -1.082938757520e+00, 1.074438789363e-03, 6.2172e-02, 2.4190e-03, + 2DIAGNOSTIC, 19, -1.084020472329e+00, 9.262583057972e-04, 6.3702e-02, 1.5299e-03, + 2DIAGNOSTIC, 20, -1.083850138769e+00, 7.583377969099e-04, 6.5039e-02, 1.3371e-03, + 2DIAGNOSTIC, 21, -1.084516196089e+00, 5.793341847168e-04, 6.6405e-02, 1.3661e-03, + 2DIAGNOSTIC, 22, -1.085488734074e+00, 4.329534238414e-04, 6.7714e-02, 1.3089e-03, + 2DIAGNOSTIC, 23, -1.086974399480e+00, 3.513101455973e-04, 6.9028e-02, 1.3139e-03, + 2DIAGNOSTIC, 24, -1.089187333793e+00, 2.987828021590e-04, 7.0647e-02, 1.6191e-03, + 2DIAGNOSTIC, 25, -1.090147073118e+00, 2.734569195271e-04, 7.2159e-02, 1.5121e-03, + 2DIAGNOSTIC, 26, -1.089743137135e+00, 2.274460718047e-04, 7.4144e-02, 1.9851e-03, + 2DIAGNOSTIC, 27, -1.090952034714e+00, 2.034175901237e-04, 7.5498e-02, 1.3540e-03, + 2DIAGNOSTIC, 28, -1.091882410262e+00, 1.998398924161e-04, 7.6820e-02, 1.3220e-03, + 2DIAGNOSTIC, 29, -1.097242971190e+00, 2.382339849158e-04, 7.9077e-02, 2.2571e-03, + 2DIAGNOSTIC, 30, -1.097779098708e+00, 2.537101112074e-04, 8.0479e-02, 1.4019e-03, + 2DIAGNOSTIC, 31, -1.098993773159e+00, 2.615880398755e-04, 8.1822e-02, 1.3430e-03, + 2DIAGNOSTIC, 32, -1.099622620441e+00, 2.582348769676e-04, 8.3987e-02, 2.1651e-03, + 2DIAGNOSTIC, 33, -1.099857687319e+00, 2.441420996851e-04, 8.6350e-02, 2.3630e-03, + 2DIAGNOSTIC, 34, -1.099865265540e+00, 2.248966512893e-04, 8.7693e-02, 1.3430e-03, + 2DIAGNOSTIC, 35, -1.099905932212e+00, 1.934633325654e-04, 8.8976e-02, 1.2832e-03, + 2DIAGNOSTIC, 36, -1.099967912550e+00, 1.433202849320e-04, 9.0310e-02, 1.3340e-03, + 2DIAGNOSTIC, 37, -1.100047619040e+00, 9.210744301118e-05, 9.1663e-02, 1.3530e-03, + 2DIAGNOSTIC, 38, -1.100149672847e+00, 4.141300523237e-05, 9.2943e-02, 1.2801e-03, + 2DIAGNOSTIC, 39, -1.100270206113e+00, 2.752344862874e-05, 9.4308e-02, 1.3649e-03, + 2DIAGNOSTIC, 40, -1.100422030010e+00, 1.627962495616e-05, 9.5658e-02, 1.3499e-03, + 2DIAGNOSTIC, 41, -1.100692636363e+00, 1.376539406493e-05, 9.7210e-02, 1.5519e-03, + 2DIAGNOSTIC, 42, -1.100570849303e+00, 1.330913911520e-05, 9.8993e-02, 1.7829e-03, + 2DIAGNOSTIC, 43, -1.100888604375e+00, 1.518248111419e-05, 1.0026e-01, 1.2720e-03, + 2DIAGNOSTIC, 44, -1.102044490317e+00, 2.263446077154e-05, 1.0177e-01, 1.5090e-03, + 2DIAGNOSTIC, 45, -1.103058886924e+00, 3.373029056784e-05, 1.0309e-01, 1.3151e-03, + 2DIAGNOSTIC, 46, -1.103146901187e+00, 4.196372488344e-05, 1.0455e-01, 1.4579e-03, + 2DIAGNOSTIC, 47, -1.104385000057e+00, 5.355671047441e-05, 1.0605e-01, 1.5070e-03, + 2DIAGNOSTIC, 48, -1.104496455793e+00, 6.064374890790e-05, 1.1101e-01, 4.9520e-03, + 2DIAGNOSTIC, 49, -1.104496364626e+00, 6.226816422229e-05, 1.1231e-01, 1.3061e-03, + 2DIAGNOSTIC, 50, -1.104496498766e+00, 5.871363321883e-05, 1.1363e-01, 1.3139e-03, + 2DIAGNOSTIC, 51, -1.104496725549e+00, 5.125138589376e-05, 1.1496e-01, 1.3299e-03, + 2DIAGNOSTIC, 52, -1.104497108902e+00, 3.861143587356e-05, 1.1624e-01, 1.2851e-03, + 2DIAGNOSTIC, 53, -1.104497756766e+00, 2.429258321207e-05, 1.1756e-01, 1.3218e-03, + 2DIAGNOSTIC, 54, -1.104498851210e+00, 1.391440002763e-05, 1.1892e-01, 1.3549e-03, + 2DIAGNOSTIC, 55, -1.104500698797e+00, 7.633956955789e-06, 1.2024e-01, 1.3261e-03, + 2DIAGNOSTIC, 56, -1.104503814198e+00, 1.180047501045e-06, 1.2166e-01, 1.4169e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.256411030034e-01, 1.797693134862e+308, 1.6354e-01, 4.1879e-02, + 2DIAGNOSTIC, 2, -7.255652164272e-01, 1.797693134862e+308, 1.6635e-01, 2.8069e-03, + 2DIAGNOSTIC, 3, -7.265973027565e-01, 1.797693134862e+308, 1.6897e-01, 2.6269e-03, + 2DIAGNOSTIC, 4, -7.279849651236e-01, 1.797693134862e+308, 1.7151e-01, 2.5358e-03, + 2DIAGNOSTIC, 5, -7.302698046074e-01, 1.797693134862e+308, 1.7380e-01, 2.2891e-03, + 2DIAGNOSTIC, 6, -7.336114174073e-01, 1.797693134862e+308, 1.7652e-01, 2.7258e-03, + 2DIAGNOSTIC, 7, -7.422969461345e-01, 1.797693134862e+308, 1.7968e-01, 3.1581e-03, + 2DIAGNOSTIC, 8, -7.435549207010e-01, 1.797693134862e+308, 1.8253e-01, 2.8470e-03, + 2DIAGNOSTIC, 9, -7.444261668440e-01, 1.797693134862e+308, 1.8582e-01, 3.2921e-03, + 2DIAGNOSTIC, 10, -7.453960361512e-01, 2.145643471107e-03, 1.8910e-01, 3.2802e-03, + 2DIAGNOSTIC, 11, -7.458720571109e-01, 1.966798574785e-03, 1.9208e-01, 2.9809e-03, + 2DIAGNOSTIC, 12, -7.463828081526e-01, 1.652062211600e-03, 1.9461e-01, 2.5270e-03, + 2DIAGNOSTIC, 13, -7.472825435444e-01, 1.294506823487e-03, 1.9775e-01, 3.1409e-03, + 2DIAGNOSTIC, 14, -7.476835426749e-01, 9.228407036023e-04, 2.0226e-01, 4.5090e-03, + 2DIAGNOSTIC, 15, -7.477449538533e-01, 5.779476483330e-04, 2.0480e-01, 2.5411e-03, + 2DIAGNOSTIC, 16, -7.478034423052e-01, 3.004173727046e-04, 2.0734e-01, 2.5439e-03, + 2DIAGNOSTIC, 17, -7.478901064489e-01, 2.262804163116e-04, 2.0988e-01, 2.5320e-03, + 2DIAGNOSTIC, 18, -7.479965872011e-01, 1.683219851473e-04, 2.1246e-01, 2.5852e-03, + 2DIAGNOSTIC, 19, -7.480833075124e-01, 1.199399449961e-04, 2.1496e-01, 2.4991e-03, + 2DIAGNOSTIC, 20, -7.481373647541e-01, 8.518420344009e-05, 2.1751e-01, 2.5511e-03, + 2DIAGNOSTIC, 21, -7.481752498064e-01, 5.541235323402e-05, 2.2054e-01, 3.0301e-03, + 2DIAGNOSTIC, 22, -7.484328021460e-01, 3.635676923069e-05, 2.2360e-01, 3.0620e-03, + 2DIAGNOSTIC, 23, -7.489351216672e-01, 3.875308463949e-05, 2.2658e-01, 2.9750e-03, + 2DIAGNOSTIC, 24, -7.488958054878e-01, 4.302058614351e-05, 2.2974e-01, 3.1610e-03, + 2DIAGNOSTIC, 25, -7.489031923192e-01, 4.425411503715e-05, 2.3286e-01, 3.1250e-03, + 2DIAGNOSTIC, 26, -7.488675923586e-01, 4.177555767644e-05, 2.3576e-01, 2.8970e-03, + 2DIAGNOSTIC, 27, -7.487771663186e-01, 3.551164281545e-05, 2.3860e-01, 2.8369e-03, + 2DIAGNOSTIC, 28, -7.487327100703e-01, 2.719663164189e-05, 2.4115e-01, 2.5511e-03, + 2DIAGNOSTIC, 29, -7.486407237406e-01, 1.694928672707e-05, 2.4368e-01, 2.5260e-03, + 2DIAGNOSTIC, 30, -7.486558093844e-01, 6.912882026124e-06, 2.4653e-01, 2.8551e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.817456926420e-01, 1.797693134862e+308, 3.1408e-01, 6.7548e-02, + 2DIAGNOSTIC, 2, -5.819904193370e-01, 1.797693134862e+308, 3.2901e-01, 1.4932e-02, + 2DIAGNOSTIC, 3, -5.823484848942e-01, 1.797693134862e+308, 3.4231e-01, 1.3304e-02, + 2DIAGNOSTIC, 4, -5.829296502627e-01, 1.797693134862e+308, 3.5499e-01, 1.2672e-02, + 2DIAGNOSTIC, 5, -5.835914462817e-01, 1.797693134862e+308, 3.6781e-01, 1.2824e-02, + 2DIAGNOSTIC, 6, -5.840501755953e-01, 1.797693134862e+308, 3.8021e-01, 1.2399e-02, + 2DIAGNOSTIC, 7, -5.853221105766e-01, 1.797693134862e+308, 3.9750e-01, 1.7289e-02, + 2DIAGNOSTIC, 8, -5.857288653539e-01, 1.797693134862e+308, 4.1140e-01, 1.3900e-02, + 2DIAGNOSTIC, 9, -5.858700570821e-01, 1.797693134862e+308, 4.2359e-01, 1.2187e-02, + 2DIAGNOSTIC, 10, -5.863474412137e-01, 5.656282671107e-04, 4.3654e-01, 1.2953e-02, + 2DIAGNOSTIC, 11, -5.877854829187e-01, 5.582960380698e-04, 4.4920e-01, 1.2664e-02, + 2DIAGNOSTIC, 12, -5.892628979474e-01, 5.700271525729e-04, 4.6184e-01, 1.2643e-02, + 2DIAGNOSTIC, 13, -5.900525826165e-01, 5.704283180133e-04, 4.7965e-01, 1.7803e-02, + 2DIAGNOSTIC, 14, -5.907010070024e-01, 5.625038528020e-04, 4.9563e-01, 1.5979e-02, + 2DIAGNOSTIC, 15, -5.910030219000e-01, 5.359991722145e-04, 5.0801e-01, 1.2382e-02, + 2DIAGNOSTIC, 16, -5.926255419478e-01, 5.253949275368e-04, 5.2641e-01, 1.8406e-02, + 2DIAGNOSTIC, 17, -5.931200877571e-01, 5.162790631246e-04, 5.3924e-01, 1.2830e-02, + 2DIAGNOSTIC, 18, -5.935792390570e-01, 4.843428560804e-04, 5.5282e-01, 1.3580e-02, + 2DIAGNOSTIC, 19, -5.938957227164e-01, 4.235677463067e-04, 5.7371e-01, 2.0881e-02, + 2DIAGNOSTIC, 20, -5.939233256862e-01, 3.414846501447e-04, 5.9030e-01, 1.6589e-02, + 2DIAGNOSTIC, 21, -5.939308767791e-01, 2.679484123240e-04, 6.0460e-01, 1.4305e-02, + 2DIAGNOSTIC, 22, -5.939353358690e-01, 2.083779026511e-04, 6.2096e-01, 1.6363e-02, + 2DIAGNOSTIC, 23, -5.939386692643e-01, 1.513549313834e-04, 6.3732e-01, 1.6354e-02, + 2DIAGNOSTIC, 24, -5.939434653822e-01, 9.844970017318e-05, 6.5389e-01, 1.6577e-02, + 2DIAGNOSTIC, 25, -5.939465773551e-01, 4.591388329485e-05, 6.7264e-01, 1.8750e-02, + 2DIAGNOSTIC, 26, -5.939474200422e-01, 2.330353521038e-05, 6.8895e-01, 1.6304e-02, + 2DIAGNOSTIC, 27, -5.939459494550e-01, 8.949525892525e-06, 7.0211e-01, 1.3164e-02, + 2DIAGNOSTIC, 28, -5.939320816295e-01, 2.414800074367e-06, 7.1627e-01, 1.4154e-02, + 2DIAGNOSTIC, 29, -5.939359081615e-01, 1.531683763698e-06, 7.3118e-01, 1.4918e-02, + 2DIAGNOSTIC, 30, -5.939382373015e-01, 1.140493298808e-06, 7.4572e-01, 1.4535e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.989191403708e-01, 1.797693134862e+308, 9.5478e-01, 2.0906e-01, + Elapsed time (stage 1): 9.7824e-01 + + +Total elapsed time: 2.3353e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:28:16 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 31 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 51 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 90.72% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 90.72% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[17529 15903 7255 0 996 0 430 248 1786 1231 1785 0 + 407 744 0 0 0 0 0 0 0 0 0 0 + 0 0 0 0 0 0 0] +[226717 70111 17171 5024 11141 6169 1683 1032 1506 1680 + 8652 1223 1334 1540 594 889 878 1220 252 282 + 215 0 202 0 0 0 0 0 0 0 + 0] +[ 235 16141 0 0 7377 0 0 0 650 0 6130 0 + 4864 0 0 0 0 0 0 9433 0 0 0 13636 + 0 0 0 223 0 0 11631] +[ 631 228017 512 204 629 3385 725 7139 9986 459 + 0 0 961 0 3132 195 0 0 887 838 + 0 271 231 51884 401 338 624 0 0 1767 + 0] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:37:59 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:38:06 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:41:57 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:41:57 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:41:57 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:42:07 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:42:14 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC006 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:43:47 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:44:15 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:47:41 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:47:42 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:49:03 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:49:03 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x56531f277d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [81.9449, 113.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56531f0ee730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc98b347010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x56531f27b020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.01, 53.028, -110.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56531f2810c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc987c88010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x56531f291840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [81.9449, 113.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56531f27d890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc982880010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x56531f2953e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.01, 53.028, -110.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56531f284130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc97f1c1010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.400493936875e-01, 1.797693134862e+308, 3.9741e-01, 3.9741e-01, + 2DIAGNOSTIC, 2, -3.424556266743e-01, 1.797693134862e+308, 3.9898e-01, 1.5652e-03, + 2DIAGNOSTIC, 3, -3.467944016225e-01, 1.797693134862e+308, 4.0047e-01, 1.4911e-03, + 2DIAGNOSTIC, 4, -3.503819022696e-01, 1.797693134862e+308, 4.0198e-01, 1.5130e-03, + 2DIAGNOSTIC, 5, -3.530353081748e-01, 1.797693134862e+308, 4.0429e-01, 2.3069e-03, + 2DIAGNOSTIC, 6, -3.575842587406e-01, 1.797693134862e+308, 4.0626e-01, 1.9720e-03, + 2DIAGNOSTIC, 7, -3.747990028068e-01, 1.797693134862e+308, 4.0838e-01, 2.1210e-03, + 2DIAGNOSTIC, 8, -3.811886893153e-01, 1.797693134862e+308, 4.1010e-01, 1.7211e-03, + 2DIAGNOSTIC, 9, -3.913674656148e-01, 1.797693134862e+308, 4.1185e-01, 1.7500e-03, + 2DIAGNOSTIC, 10, -3.974248158475e-01, 1.066789791117e-02, 4.1485e-01, 2.9941e-03, + 2DIAGNOSTIC, 11, -4.742673665747e-01, 1.527410186598e-02, 4.1805e-01, 3.1991e-03, + 2DIAGNOSTIC, 12, -4.745983706333e-01, 1.761203959566e-02, 4.2070e-01, 2.6529e-03, + 2DIAGNOSTIC, 13, -4.752036740719e-01, 1.827140093025e-02, 4.2275e-01, 2.0559e-03, + 2DIAGNOSTIC, 14, -4.754662817507e-01, 1.744665890339e-02, 4.2482e-01, 2.0659e-03, + 2DIAGNOSTIC, 15, -4.753483643136e-01, 1.528979937406e-02, 4.2680e-01, 1.9779e-03, + 2DIAGNOSTIC, 16, -4.752011915461e-01, 1.218846271263e-02, 4.2848e-01, 1.6861e-03, + 2DIAGNOSTIC, 17, -4.750659411898e-01, 9.087297354199e-03, 4.3018e-01, 1.6949e-03, + 2DIAGNOSTIC, 18, -4.751639528846e-01, 5.837521067925e-03, 4.3184e-01, 1.6642e-03, + 2DIAGNOSTIC, 19, -4.752004079766e-01, 2.835412316720e-03, 4.3352e-01, 1.6720e-03, + 2DIAGNOSTIC, 20, -4.752157395330e-01, 4.366576788447e-05, 4.3656e-01, 3.0432e-03, + 2DIAGNOSTIC, 21, -4.752185293676e-01, 1.246850795016e-05, 4.3848e-01, 1.9259e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.523008386820e-01, 1.797693134862e+308, 6.9884e-01, 2.6036e-01, + 2DIAGNOSTIC, 2, -3.546203356998e-01, 1.797693134862e+308, 7.0124e-01, 2.3959e-03, + 2DIAGNOSTIC, 3, -3.584541144656e-01, 1.797693134862e+308, 7.0362e-01, 2.3801e-03, + 2DIAGNOSTIC, 4, -3.616756505487e-01, 1.797693134862e+308, 7.0639e-01, 2.7740e-03, + 2DIAGNOSTIC, 5, -3.645118701960e-01, 1.797693134862e+308, 7.0888e-01, 2.4900e-03, + 2DIAGNOSTIC, 6, -3.674021370142e-01, 1.797693134862e+308, 7.1139e-01, 2.5110e-03, + 2DIAGNOSTIC, 7, -3.688897780380e-01, 1.797693134862e+308, 7.1390e-01, 2.5079e-03, + 2DIAGNOSTIC, 8, -3.789638061047e-01, 1.797693134862e+308, 7.1636e-01, 2.4590e-03, + 2DIAGNOSTIC, 9, -4.173105045068e-01, 1.797693134862e+308, 7.1860e-01, 2.2449e-03, + 2DIAGNOSTIC, 10, -4.611771401697e-01, 1.365939106093e-02, 7.2203e-01, 3.4230e-03, + 2DIAGNOSTIC, 11, -4.630851293150e-01, 1.634332432760e-02, 7.2474e-01, 2.7108e-03, + 2DIAGNOSTIC, 12, -4.644001329054e-01, 1.733317428472e-02, 7.2809e-01, 3.3500e-03, + 2DIAGNOSTIC, 13, -4.645111920094e-01, 1.683882248925e-02, 7.3070e-01, 2.6159e-03, + 2DIAGNOSTIC, 14, -4.654096907178e-01, 1.507806597318e-02, 7.3396e-01, 3.2589e-03, + 2DIAGNOSTIC, 15, -4.663097870920e-01, 1.235843104018e-02, 7.3621e-01, 2.2490e-03, + 2DIAGNOSTIC, 16, -4.672359150913e-01, 9.086461522723e-03, 7.3849e-01, 2.2781e-03, + 2DIAGNOSTIC, 17, -4.681030116727e-01, 5.547920268923e-03, 7.4108e-01, 2.5911e-03, + 2DIAGNOSTIC, 18, -4.685995843009e-01, 2.320674884035e-03, 7.4403e-01, 2.9480e-03, + 2DIAGNOSTIC, 19, -4.691681618719e-01, 6.010651466442e-04, 7.4633e-01, 2.3029e-03, + 2DIAGNOSTIC, 20, -4.702014319425e-01, 5.250496433264e-04, 7.4892e-01, 2.5871e-03, + 2DIAGNOSTIC, 21, -4.720424006734e-01, 5.259966291832e-04, 7.5185e-01, 2.9349e-03, + 2DIAGNOSTIC, 22, -4.724383586464e-01, 5.290021702730e-04, 7.5452e-01, 2.6619e-03, + 2DIAGNOSTIC, 23, -4.728639248980e-01, 4.984387230755e-04, 7.5681e-01, 2.2938e-03, + 2DIAGNOSTIC, 24, -4.732007252285e-01, 4.584021575727e-04, 7.6007e-01, 3.2592e-03, + 2DIAGNOSTIC, 25, -4.733468257973e-01, 4.057571135227e-04, 7.6266e-01, 2.5949e-03, + 2DIAGNOSTIC, 26, -4.737196675819e-01, 3.513336958658e-04, 7.6525e-01, 2.5890e-03, + 2DIAGNOSTIC, 27, -4.738377908642e-01, 2.920156768925e-04, 7.6754e-01, 2.2819e-03, + 2DIAGNOSTIC, 28, -4.739430953184e-01, 2.243886164954e-04, 7.7014e-01, 2.6021e-03, + 2DIAGNOSTIC, 29, -4.740470354601e-01, 1.557284193395e-04, 7.7277e-01, 2.6338e-03, + 2DIAGNOSTIC, 30, -4.743397820504e-01, 1.050191633672e-04, 7.7508e-01, 2.3069e-03, + 2DIAGNOSTIC, 31, -4.753374444389e-01, 1.067946376463e-04, 7.7868e-01, 3.5999e-03, + 2DIAGNOSTIC, 32, -4.757745795680e-01, 1.145444704165e-04, 7.8097e-01, 2.2900e-03, + 2DIAGNOSTIC, 33, -4.757097110665e-01, 1.180645144877e-04, 7.8326e-01, 2.2969e-03, + 2DIAGNOSTIC, 34, -4.759611197466e-01, 1.217747263847e-04, 7.8685e-01, 3.5830e-03, + 2DIAGNOSTIC, 35, -4.761422471901e-01, 1.194602594791e-04, 7.8947e-01, 2.6209e-03, + 2DIAGNOSTIC, 36, -4.762088478160e-01, 1.134115218504e-04, 7.9175e-01, 2.2771e-03, + 2DIAGNOSTIC, 37, -4.764453048926e-01, 1.030670337221e-04, 7.9434e-01, 2.5899e-03, + 2DIAGNOSTIC, 38, -4.764893279934e-01, 8.629398565776e-05, 7.9660e-01, 2.2609e-03, + 2DIAGNOSTIC, 39, -4.766343128437e-01, 6.650138499727e-05, 7.9921e-01, 2.6100e-03, + 2DIAGNOSTIC, 40, -4.770768945835e-01, 5.270346589768e-05, 8.0214e-01, 2.9318e-03, + 2DIAGNOSTIC, 41, -4.773533908404e-01, 5.399115324142e-05, 8.0473e-01, 2.5911e-03, + 2DIAGNOSTIC, 42, -4.774220188683e-01, 5.779724700875e-05, 8.0704e-01, 2.3100e-03, + 2DIAGNOSTIC, 43, -4.774403440671e-01, 5.533174827266e-05, 8.0930e-01, 2.2600e-03, + 2DIAGNOSTIC, 44, -4.777665313011e-01, 5.604308631387e-05, 8.1222e-01, 2.9180e-03, + 2DIAGNOSTIC, 45, -4.778433757306e-01, 5.483119723508e-05, 8.1450e-01, 2.2831e-03, + 2DIAGNOSTIC, 46, -4.779813444976e-01, 5.118388073970e-05, 8.1683e-01, 2.3298e-03, + 2DIAGNOSTIC, 47, -4.781881867460e-01, 4.889598711998e-05, 8.1944e-01, 2.6121e-03, + 2DIAGNOSTIC, 48, -4.791569993993e-01, 5.533050577427e-05, 8.2181e-01, 2.3651e-03, + 2DIAGNOSTIC, 49, -4.808955905301e-01, 7.983821593182e-05, 8.2445e-01, 2.6441e-03, + 2DIAGNOSTIC, 50, -4.856149024820e-01, 1.596731898776e-04, 8.2713e-01, 2.6731e-03, + 2DIAGNOSTIC, 51, -4.876362699641e-01, 2.478412810555e-04, 8.3014e-01, 3.0150e-03, + 2DIAGNOSTIC, 52, -4.871265133670e-01, 3.037143902018e-04, 8.3281e-01, 2.6710e-03, + 2DIAGNOSTIC, 53, -4.870745301050e-01, 3.289060974947e-04, 8.3548e-01, 2.6729e-03, + 2DIAGNOSTIC, 54, -4.871108685603e-01, 3.255751260116e-04, 8.3781e-01, 2.3232e-03, + 2DIAGNOSTIC, 55, -4.870645030564e-01, 2.905389104295e-04, 8.4046e-01, 2.6510e-03, + 2DIAGNOSTIC, 56, -4.870682806480e-01, 2.304170801319e-04, 8.4282e-01, 2.3580e-03, + 2DIAGNOSTIC, 57, -4.870760309743e-01, 1.535817154355e-04, 8.4515e-01, 2.3370e-03, + 2DIAGNOSTIC, 58, -4.871127745374e-01, 7.604074533461e-05, 8.4789e-01, 2.7339e-03, + 2DIAGNOSTIC, 59, -4.869041740658e-01, 8.807507830572e-06, 8.5062e-01, 2.7301e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.787478435832e-01, 1.797693134862e+308, 1.1091e+00, 2.5853e-01, + 2DIAGNOSTIC, 2, -3.790862893989e-01, 1.797693134862e+308, 1.1212e+00, 1.2065e-02, + 2DIAGNOSTIC, 3, -3.796673350558e-01, 1.797693134862e+308, 1.1367e+00, 1.5492e-02, + 2DIAGNOSTIC, 4, -3.797745544802e-01, 1.797693134862e+308, 1.1503e+00, 1.3579e-02, + 2DIAGNOSTIC, 5, -3.797976888051e-01, 1.797693134862e+308, 1.1652e+00, 1.4951e-02, + 2DIAGNOSTIC, 6, -3.797644397902e-01, 1.797693134862e+308, 1.1780e+00, 1.2765e-02, + 2DIAGNOSTIC, 7, -3.798064441742e-01, 1.797693134862e+308, 1.1906e+00, 1.2573e-02, + 2DIAGNOSTIC, 8, -3.799874179875e-01, 1.797693134862e+308, 1.2045e+00, 1.3906e-02, + 2DIAGNOSTIC, 9, -3.805598444275e-01, 1.797693134862e+308, 1.2169e+00, 1.2436e-02, + 2DIAGNOSTIC, 10, -3.823908375150e-01, 3.894690631632e-04, 1.2324e+00, 1.5493e-02, + 2DIAGNOSTIC, 11, -3.846276716842e-01, 5.848191563401e-04, 1.2486e+00, 1.6175e-02, + 2DIAGNOSTIC, 12, -3.859681056857e-01, 7.963115553096e-04, 1.2627e+00, 1.4075e-02, + 2DIAGNOSTIC, 13, -3.862388397479e-01, 9.526305195796e-04, 1.2751e+00, 1.2415e-02, + 2DIAGNOSTIC, 14, -3.873478614188e-01, 1.066052158151e-03, 1.2886e+00, 1.3496e-02, + 2DIAGNOSTIC, 15, -3.921358255767e-01, 1.302446584742e-03, 1.3011e+00, 1.2531e-02, + 2DIAGNOSTIC, 16, -4.223265869442e-01, 2.767160648631e-03, 1.3133e+00, 1.2158e-02, + 2DIAGNOSTIC, 17, -4.317828192150e-01, 4.160951751771e-03, 1.3254e+00, 1.2150e-02, + 2DIAGNOSTIC, 18, -4.484303610204e-01, 5.677268412602e-03, 1.3466e+00, 2.1198e-02, + 2DIAGNOSTIC, 19, -4.531220575072e-01, 6.689051966307e-03, 1.3585e+00, 1.1872e-02, + 2DIAGNOSTIC, 20, -4.555848397374e-01, 7.119234919704e-03, 1.3708e+00, 1.2313e-02, + 2DIAGNOSTIC, 21, -4.628841079406e-01, 7.149740555109e-03, 1.3849e+00, 1.4107e-02, + 2DIAGNOSTIC, 22, -4.708486258979e-01, 6.794933242101e-03, 1.3968e+00, 1.1955e-02, + 2DIAGNOSTIC, 23, -4.775497921947e-01, 6.054935139948e-03, 1.4109e+00, 1.4065e-02, + 2DIAGNOSTIC, 24, -4.842829864583e-01, 5.053881323888e-03, 1.4321e+00, 2.1187e-02, + 2DIAGNOSTIC, 25, -4.866359022260e-01, 3.856228995929e-03, 1.4441e+00, 1.1949e-02, + 2DIAGNOSTIC, 26, -4.879658416342e-01, 3.233251126526e-03, 1.4560e+00, 1.1949e-02, + 2DIAGNOSTIC, 27, -4.913649703540e-01, 2.672189471189e-03, 1.4680e+00, 1.1979e-02, + 2DIAGNOSTIC, 28, -4.969968708475e-01, 2.438184945873e-03, 1.4822e+00, 1.4186e-02, + 2DIAGNOSTIC, 29, -5.014040043710e-01, 2.201476446557e-03, 1.4980e+00, 1.5870e-02, + 2DIAGNOSTIC, 30, -5.041253928629e-01, 1.889437014018e-03, 1.5102e+00, 1.2149e-02, + 2DIAGNOSTIC, 31, -5.136593971265e-01, 1.781022840801e-03, 1.5224e+00, 1.2256e-02, + 2DIAGNOSTIC, 32, -5.215513681905e-01, 1.830971190151e-03, 1.5368e+00, 1.4353e-02, + 2DIAGNOSTIC, 33, -5.259143266775e-01, 1.916475653313e-03, 1.5508e+00, 1.4035e-02, + 2DIAGNOSTIC, 34, -5.367000097978e-01, 2.148304631179e-03, 1.5629e+00, 1.2062e-02, + 2DIAGNOSTIC, 35, -5.396018439657e-01, 2.255148774703e-03, 1.5758e+00, 1.2880e-02, + 2DIAGNOSTIC, 36, -5.548363349740e-01, 2.433146172862e-03, 1.5944e+00, 1.8654e-02, + 2DIAGNOSTIC, 37, -5.619625731531e-01, 2.540713349146e-03, 1.6117e+00, 1.7256e-02, + 2DIAGNOSTIC, 38, -5.651907783197e-01, 2.546584871150e-03, 1.6261e+00, 1.4455e-02, + 2DIAGNOSTIC, 39, -5.671969111930e-01, 2.416951668347e-03, 1.6405e+00, 1.4343e-02, + 2DIAGNOSTIC, 40, -5.675419579865e-01, 2.111634226307e-03, 1.6534e+00, 1.2935e-02, + 2DIAGNOSTIC, 41, -5.681352647841e-01, 1.773859136926e-03, 1.6667e+00, 1.3266e-02, + 2DIAGNOSTIC, 42, -5.696724287844e-01, 1.423818094908e-03, 1.6798e+00, 1.3135e-02, + 2DIAGNOSTIC, 43, -5.709193151883e-01, 1.036221250930e-03, 1.7009e+00, 2.1071e-02, + 2DIAGNOSTIC, 44, -5.715265514895e-01, 7.315338753073e-04, 1.7163e+00, 1.5384e-02, + 2DIAGNOSTIC, 45, -5.715532205307e-01, 4.092982195936e-04, 1.7310e+00, 1.4779e-02, + 2DIAGNOSTIC, 46, -5.717094892709e-01, 2.652157419373e-04, 1.7464e+00, 1.5355e-02, + 2DIAGNOSTIC, 47, -5.718080710367e-01, 1.944321467596e-04, 1.7682e+00, 2.1761e-02, + 2DIAGNOSTIC, 48, -5.718618166706e-01, 1.486694350817e-04, 1.7839e+00, 1.5710e-02, + 2DIAGNOSTIC, 49, -5.719991068133e-01, 1.171754035799e-04, 1.8007e+00, 1.6798e-02, + 2DIAGNOSTIC, 50, -5.719254894202e-01, 7.948777035405e-05, 1.8183e+00, 1.7633e-02, + 2DIAGNOSTIC, 51, -5.719195460065e-01, 4.263099836635e-05, 1.8340e+00, 1.5731e-02, + 2DIAGNOSTIC, 52, -5.719141391226e-01, 2.045118293547e-05, 1.8483e+00, 1.4272e-02, + 2DIAGNOSTIC, 53, -5.719048107033e-01, 1.086909911704e-05, 1.8607e+00, 1.2388e-02, + 2DIAGNOSTIC, 54, -5.719089827383e-01, 7.354666906146e-06, 1.8750e+00, 1.4311e-02, + 2DIAGNOSTIC, 55, -5.719255272116e-01, 3.788857774457e-06, 1.8876e+00, 1.2640e-02, + 2DIAGNOSTIC, 56, -5.719308084120e-01, 1.747910328587e-06, 1.9005e+00, 1.2859e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.880905529133e-01, 1.797693134862e+308, 2.3670e+00, 4.6653e-01, + 2DIAGNOSTIC, 2, -4.882739657379e-01, 1.797693134862e+308, 2.4605e+00, 9.3467e-02, + 2DIAGNOSTIC, 3, -4.883281424802e-01, 1.797693134862e+308, 2.5513e+00, 9.0833e-02, + 2DIAGNOSTIC, 4, -4.883823869425e-01, 1.797693134862e+308, 2.6429e+00, 9.1607e-02, + 2DIAGNOSTIC, 5, -4.885602366512e-01, 1.797693134862e+308, 2.7627e+00, 1.1971e-01, + 2DIAGNOSTIC, 6, -4.886139437195e-01, 1.797693134862e+308, 2.8540e+00, 9.1307e-02, + 2DIAGNOSTIC, 7, -4.886432827316e-01, 1.797693134862e+308, 2.9653e+00, 1.1133e-01, + 2DIAGNOSTIC, 8, -4.886947295522e-01, 1.797693134862e+308, 3.1048e+00, 1.3946e-01, + 2DIAGNOSTIC, 9, -4.886987435958e-01, 1.797693134862e+308, 3.2003e+00, 9.5519e-02, + 2DIAGNOSTIC, 10, -4.887090029391e-01, 8.333000482885e-05, 3.2972e+00, 9.6891e-02, + 2DIAGNOSTIC, 11, -4.887231050858e-01, 5.956933828760e-05, 3.3927e+00, 9.5529e-02, + 2DIAGNOSTIC, 12, -4.887428148972e-01, 4.457926214582e-05, 3.5329e+00, 1.4025e-01, + 2DIAGNOSTIC, 13, -4.887510705989e-01, 3.091540620813e-05, 3.6596e+00, 1.2666e-01, + 2DIAGNOSTIC, 14, -4.887464268754e-01, 1.851166394867e-05, 3.7705e+00, 1.1086e-01, + 2DIAGNOSTIC, 15, -4.887483627462e-01, 1.325064658492e-05, 3.9109e+00, 1.4043e-01, + 2DIAGNOSTIC, 16, -4.887495023319e-01, 9.603351792925e-06, 4.2868e+00, 3.7586e-01, + 2DIAGNOSTIC, 17, -4.887495023284e-01, 6.627902911137e-06, 4.6678e+00, 3.8106e-01, + 2DIAGNOSTIC, 18, -4.887495023284e-01, 5.209140967202e-06, 4.7756e+00, 1.0776e-01, + 2DIAGNOSTIC, 19, -4.887495023284e-01, 3.751579808850e-06, 4.8965e+00, 1.2098e-01, + 2DIAGNOSTIC, 20, -4.887495023284e-01, 2.543688571402e-06, 5.0043e+00, 1.0780e-01, + 2DIAGNOSTIC, 21, -4.887495023284e-01, 1.736969337293e-06, 5.1127e+00, 1.0833e-01, + 2DIAGNOSTIC, 22, -4.887495023284e-01, 1.496968102872e-06, 5.2444e+00, 1.3171e-01, + 2DIAGNOSTIC, 23, -4.887495023284e-01, 1.486298851647e-06, 5.3705e+00, 1.2612e-01, + 2DIAGNOSTIC, 24, -4.887495023284e-01, 1.353317326133e-06, 5.5101e+00, 1.3955e-01, + 2DIAGNOSTIC, 25, -4.887495023284e-01, 1.272660950374e-06, 5.6329e+00, 1.2287e-01, + 2DIAGNOSTIC, 26, -4.887495023284e-01, 1.223702762697e-06, 5.7436e+00, 1.1065e-01, + 2DIAGNOSTIC, 27, -4.887495023284e-01, 1.178371727396e-06, 5.8660e+00, 1.2236e-01, + 2DIAGNOSTIC, 28, -4.887495023284e-01, 1.136279223296e-06, 5.9724e+00, 1.0643e-01, + 2DIAGNOSTIC, 29, -4.887495023284e-01, 1.097090169933e-06, 6.0764e+00, 1.0401e-01, + 2DIAGNOSTIC, 30, -4.887495023284e-01, 1.060514172049e-06, 6.1812e+00, 1.0479e-01, + 2DIAGNOSTIC, 31, -4.887495023284e-01, 1.026298310967e-06, 6.2852e+00, 1.0401e-01, + Elapsed time (stage 0): 6.4913e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.965988822128e-01, 1.797693134862e+308, 2.1920e-01, 2.1920e-01, + 2DIAGNOSTIC, 2, -7.987040465214e-01, 1.797693134862e+308, 2.2047e-01, 1.2729e-03, + 2DIAGNOSTIC, 3, -8.008072537049e-01, 1.797693134862e+308, 2.2174e-01, 1.2720e-03, + 2DIAGNOSTIC, 4, -8.053647523667e-01, 1.797693134862e+308, 2.2300e-01, 1.2631e-03, + 2DIAGNOSTIC, 5, -8.163706779787e-01, 1.797693134862e+308, 2.2428e-01, 1.2751e-03, + 2DIAGNOSTIC, 6, -8.295229890176e-01, 1.797693134862e+308, 2.2553e-01, 1.2531e-03, + 2DIAGNOSTIC, 7, -8.491808397406e-01, 1.797693134862e+308, 2.2679e-01, 1.2569e-03, + 2DIAGNOSTIC, 8, -8.771603087435e-01, 1.797693134862e+308, 2.2859e-01, 1.8020e-03, + 2DIAGNOSTIC, 9, -8.959523970131e-01, 1.797693134862e+308, 2.3264e-01, 4.0500e-03, + 2DIAGNOSTIC, 10, -8.960697829351e-01, 8.858788363313e-03, 2.3424e-01, 1.5969e-03, + 2DIAGNOSTIC, 11, -8.964127172138e-01, 8.476996232846e-03, 2.3599e-01, 1.7471e-03, + 2DIAGNOSTIC, 12, -8.967479353758e-01, 7.474473880146e-03, 2.3752e-01, 1.5299e-03, + 2DIAGNOSTIC, 13, -8.966755631654e-01, 6.004893772797e-03, 2.3930e-01, 1.7850e-03, + 2DIAGNOSTIC, 14, -8.973049416248e-01, 4.329971478211e-03, 2.4087e-01, 1.5709e-03, + 2DIAGNOSTIC, 15, -8.976925728444e-01, 2.752189795088e-03, 2.4267e-01, 1.8029e-03, + 2DIAGNOSTIC, 16, -8.990539788709e-01, 1.430321316070e-03, 2.4420e-01, 1.5240e-03, + 2DIAGNOSTIC, 17, -9.005420194109e-01, 5.380623920513e-04, 2.4575e-01, 1.5490e-03, + 2DIAGNOSTIC, 18, -9.036321959738e-01, 2.574000869274e-04, 2.4756e-01, 1.8082e-03, + 2DIAGNOSTIC, 19, -9.065216126023e-01, 3.573667912397e-04, 2.4910e-01, 1.5450e-03, + 2DIAGNOSTIC, 20, -9.081836573056e-01, 4.423149723712e-04, 2.5064e-01, 1.5349e-03, + 2DIAGNOSTIC, 21, -9.159337241719e-01, 6.035633685443e-04, 2.5218e-01, 1.5471e-03, + 2DIAGNOSTIC, 22, -9.306223724502e-01, 9.123646019733e-04, 2.5373e-01, 1.5500e-03, + 2DIAGNOSTIC, 23, -9.408299876152e-01, 1.244935842762e-03, 2.5547e-01, 1.7352e-03, + 2DIAGNOSTIC, 24, -9.540368433903e-01, 1.616670894258e-03, 2.5838e-01, 2.9171e-03, + 2DIAGNOSTIC, 25, -9.537562721944e-01, 1.805798892749e-03, 2.5985e-01, 1.4679e-03, + 2DIAGNOSTIC, 26, -9.544163461020e-01, 1.837231324103e-03, 2.6161e-01, 1.7560e-03, + 2DIAGNOSTIC, 27, -9.554986576876e-01, 1.722358555440e-03, 2.6317e-01, 1.5650e-03, + 2DIAGNOSTIC, 28, -9.561021216733e-01, 1.493719844078e-03, 2.6475e-01, 1.5719e-03, + 2DIAGNOSTIC, 29, -9.575102567767e-01, 1.188842697609e-03, 2.6649e-01, 1.7490e-03, + 2DIAGNOSTIC, 30, -9.593405868448e-01, 8.312231792447e-04, 2.6803e-01, 1.5380e-03, + 2DIAGNOSTIC, 31, -9.599137595587e-01, 5.036977166966e-04, 2.6966e-01, 1.6310e-03, + 2DIAGNOSTIC, 32, -9.613022678369e-01, 3.080264859208e-04, 2.7187e-01, 2.2020e-03, + 2DIAGNOSTIC, 33, -9.625054833793e-01, 2.012677915373e-04, 2.7344e-01, 1.5700e-03, + 2DIAGNOSTIC, 34, -9.638357251044e-01, 2.167637242381e-04, 2.7494e-01, 1.5039e-03, + 2DIAGNOSTIC, 35, -9.650845523420e-01, 2.192201513740e-04, 2.7691e-01, 1.9670e-03, + 2DIAGNOSTIC, 36, -9.658144380452e-01, 2.127207991129e-04, 2.7864e-01, 1.7331e-03, + 2DIAGNOSTIC, 37, -9.641191314851e-01, 1.814279345815e-04, 2.8041e-01, 1.7719e-03, + 2DIAGNOSTIC, 38, -9.642596797908e-01, 1.411497264606e-04, 2.8302e-01, 2.6050e-03, + 2DIAGNOSTIC, 39, -9.650889531996e-01, 1.070748681490e-04, 2.8536e-01, 2.3398e-03, + 2DIAGNOSTIC, 40, -9.657696994624e-01, 8.379227296880e-05, 2.8717e-01, 1.8170e-03, + 2DIAGNOSTIC, 41, -9.655874240961e-01, 5.661020887087e-05, 2.8950e-01, 2.3232e-03, + 2DIAGNOSTIC, 42, -9.657165991635e-01, 3.710338867530e-05, 2.9160e-01, 2.1050e-03, + 2DIAGNOSTIC, 43, -9.658127205153e-01, 2.442955490533e-05, 2.9369e-01, 2.0890e-03, + 2DIAGNOSTIC, 44, -9.652153613728e-01, 1.473276955440e-05, 2.9529e-01, 1.6041e-03, + 2DIAGNOSTIC, 45, -9.639048386716e-01, 3.505837119465e-06, 2.9675e-01, 1.4539e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.131147535899e-01, 1.797693134862e+308, 5.2145e-01, 2.2470e-01, + 2DIAGNOSTIC, 2, -8.150510218186e-01, 1.797693134862e+308, 5.2354e-01, 2.0940e-03, + 2DIAGNOSTIC, 3, -8.178469053571e-01, 1.797693134862e+308, 5.2570e-01, 2.1570e-03, + 2DIAGNOSTIC, 4, -8.208253989515e-01, 1.797693134862e+308, 5.2776e-01, 2.0590e-03, + 2DIAGNOSTIC, 5, -8.243486210292e-01, 1.797693134862e+308, 5.2986e-01, 2.0988e-03, + 2DIAGNOSTIC, 6, -8.266926943886e-01, 1.797693134862e+308, 5.3184e-01, 1.9879e-03, + 2DIAGNOSTIC, 7, -8.283033502235e-01, 1.797693134862e+308, 5.3454e-01, 2.6991e-03, + 2DIAGNOSTIC, 8, -8.294573720206e-01, 1.797693134862e+308, 5.3663e-01, 2.0871e-03, + 2DIAGNOSTIC, 9, -8.300396525240e-01, 1.797693134862e+308, 5.3907e-01, 2.4340e-03, + 2DIAGNOSTIC, 10, -8.301852133823e-01, 1.459279269997e-03, 5.4230e-01, 3.2308e-03, + 2DIAGNOSTIC, 11, -8.310194253279e-01, 1.127211123820e-03, 5.4490e-01, 2.6081e-03, + 2DIAGNOSTIC, 12, -8.315494311789e-01, 8.197944830061e-04, 5.4722e-01, 2.3201e-03, + 2DIAGNOSTIC, 13, -8.319365345021e-01, 5.696502078852e-04, 5.4989e-01, 2.6610e-03, + 2DIAGNOSTIC, 14, -8.319125099192e-01, 3.753535856851e-04, 5.5223e-01, 2.3489e-03, + 2DIAGNOSTIC, 15, -8.326292894829e-01, 2.697860727611e-04, 5.5490e-01, 2.6631e-03, + 2DIAGNOSTIC, 16, -8.339263664351e-01, 2.300299529797e-04, 5.5850e-01, 3.6070e-03, + 2DIAGNOSTIC, 17, -8.340676926876e-01, 2.080770449338e-04, 5.6116e-01, 2.6550e-03, + 2DIAGNOSTIC, 18, -8.346102365100e-01, 2.021603115136e-04, 5.6378e-01, 2.6190e-03, + 2DIAGNOSTIC, 19, -8.347041137480e-01, 1.908520934089e-04, 5.6644e-01, 2.6641e-03, + 2DIAGNOSTIC, 20, -8.346870759833e-01, 1.649408520783e-04, 5.6914e-01, 2.7010e-03, + 2DIAGNOSTIC, 21, -8.345896425792e-01, 1.379213845580e-04, 5.7187e-01, 2.7270e-03, + 2DIAGNOSTIC, 22, -8.343086311512e-01, 1.044501619977e-04, 5.7424e-01, 2.3711e-03, + 2DIAGNOSTIC, 23, -8.345311877523e-01, 7.376196914086e-05, 5.7661e-01, 2.3699e-03, + 2DIAGNOSTIC, 24, -8.347720848278e-01, 4.171090541335e-05, 5.7905e-01, 2.4371e-03, + 2DIAGNOSTIC, 25, -8.350267127782e-01, 2.127926963165e-05, 5.8195e-01, 2.8992e-03, + 2DIAGNOSTIC, 26, -8.351085989292e-01, 1.879318088108e-05, 5.8467e-01, 2.7211e-03, + 2DIAGNOSTIC, 27, -8.351817829376e-01, 1.748547918627e-05, 5.8732e-01, 2.6560e-03, + 2DIAGNOSTIC, 28, -8.352400792743e-01, 2.201894747396e-05, 5.9218e-01, 4.8542e-03, + 2DIAGNOSTIC, 29, -8.352403239151e-01, 2.525274821994e-05, 5.9448e-01, 2.2991e-03, + 2DIAGNOSTIC, 30, -8.352409667437e-01, 2.579306021112e-05, 5.9703e-01, 2.5561e-03, + 2DIAGNOSTIC, 31, -8.352419842959e-01, 2.303740309331e-05, 5.9964e-01, 2.6050e-03, + 2DIAGNOSTIC, 32, -8.352435639751e-01, 1.537109758228e-05, 6.0225e-01, 2.6062e-03, + 2DIAGNOSTIC, 33, -8.352459805532e-01, 9.101327258426e-06, 6.0474e-01, 2.4979e-03, + 2DIAGNOSTIC, 34, -8.352498233795e-01, 4.837720402183e-06, 6.0729e-01, 2.5430e-03, + 2DIAGNOSTIC, 35, -8.352552726794e-01, 2.983678545062e-06, 6.0975e-01, 2.4650e-03, + 2DIAGNOSTIC, 36, -8.352616419594e-01, 1.860255459118e-06, 6.1255e-01, 2.8031e-03, + 2DIAGNOSTIC, 37, -8.352660768316e-01, 1.406211021734e-06, 6.1503e-01, 2.4750e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.908762800223e-01, 1.797693134862e+308, 8.6818e-01, 2.5315e-01, + 2DIAGNOSTIC, 2, -6.926185453307e-01, 1.797693134862e+308, 8.8187e-01, 1.3685e-02, + 2DIAGNOSTIC, 3, -6.946791311061e-01, 1.797693134862e+308, 8.9521e-01, 1.3341e-02, + 2DIAGNOSTIC, 4, -6.968703946801e-01, 1.797693134862e+308, 9.0898e-01, 1.3770e-02, + 2DIAGNOSTIC, 5, -6.991067191559e-01, 1.797693134862e+308, 9.2246e-01, 1.3483e-02, + 2DIAGNOSTIC, 6, -7.009875482149e-01, 1.797693134862e+308, 9.3572e-01, 1.3259e-02, + 2DIAGNOSTIC, 7, -7.027679731136e-01, 1.797693134862e+308, 9.5162e-01, 1.5898e-02, + 2DIAGNOSTIC, 8, -7.044548243501e-01, 1.797693134862e+308, 9.7371e-01, 2.2099e-02, + 2DIAGNOSTIC, 9, -7.046201855378e-01, 1.797693134862e+308, 9.9045e-01, 1.6734e-02, + 2DIAGNOSTIC, 10, -7.052605367674e-01, 1.417548682105e-03, 1.0040e+00, 1.3553e-02, + 2DIAGNOSTIC, 11, -7.056421100079e-01, 1.128959923739e-03, 1.0176e+00, 1.3593e-02, + 2DIAGNOSTIC, 12, -7.061375211335e-01, 8.622103290481e-04, 1.0331e+00, 1.5527e-02, + 2DIAGNOSTIC, 13, -7.064080042296e-01, 6.307059686500e-04, 1.0485e+00, 1.5424e-02, + 2DIAGNOSTIC, 14, -7.063749794566e-01, 4.374100687443e-04, 1.0623e+00, 1.3745e-02, + 2DIAGNOSTIC, 15, -7.066191371085e-01, 2.971959387843e-04, 1.0777e+00, 1.5375e-02, + 2DIAGNOSTIC, 16, -7.067451886263e-01, 1.973139484677e-04, 1.0948e+00, 1.7095e-02, + 2DIAGNOSTIC, 17, -7.067630850743e-01, 1.329608852189e-04, 1.1086e+00, 1.3820e-02, + 2DIAGNOSTIC, 18, -7.069362960925e-01, 1.056845964817e-04, 1.1239e+00, 1.5358e-02, + 2DIAGNOSTIC, 19, -7.071827367858e-01, 8.022864135594e-05, 1.1435e+00, 1.9513e-02, + 2DIAGNOSTIC, 20, -7.072194398916e-01, 6.352896499505e-05, 1.1589e+00, 1.5472e-02, + 2DIAGNOSTIC, 21, -7.072512951945e-01, 5.042950565718e-05, 1.1744e+00, 1.5516e-02, + 2DIAGNOSTIC, 22, -7.072607033907e-01, 4.319746531208e-05, 1.1901e+00, 1.5665e-02, + 2DIAGNOSTIC, 23, -7.072656715225e-01, 3.757961825057e-05, 1.2062e+00, 1.6133e-02, + 2DIAGNOSTIC, 24, -7.072428748181e-01, 2.793899175952e-05, 1.2195e+00, 1.3306e-02, + 2DIAGNOSTIC, 25, -7.071905144744e-01, 1.965152840984e-05, 1.2373e+00, 1.7714e-02, + 2DIAGNOSTIC, 26, -7.071785879316e-01, 1.214520951207e-05, 1.2506e+00, 1.3322e-02, + 2DIAGNOSTIC, 27, -7.071526783557e-01, 4.014361703171e-06, 1.2643e+00, 1.3743e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.871785911880e-01, 1.797693134862e+308, 1.7298e+00, 4.6546e-01, + 2DIAGNOSTIC, 2, -5.875885600527e-01, 1.797693134862e+308, 1.8364e+00, 1.0657e-01, + 2DIAGNOSTIC, 3, -5.879460462546e-01, 1.797693134862e+308, 1.9493e+00, 1.1298e-01, + 2DIAGNOSTIC, 4, -5.881887192194e-01, 1.797693134862e+308, 2.0616e+00, 1.1230e-01, + 2DIAGNOSTIC, 5, -5.883325139490e-01, 1.797693134862e+308, 2.1706e+00, 1.0895e-01, + 2DIAGNOSTIC, 6, -5.885337433970e-01, 1.797693134862e+308, 2.3232e+00, 1.5261e-01, + 2DIAGNOSTIC, 7, -5.886009401084e-01, 1.797693134862e+308, 2.4566e+00, 1.3345e-01, + 2DIAGNOSTIC, 8, -5.886771970981e-01, 1.797693134862e+308, 2.6028e+00, 1.4612e-01, + 2DIAGNOSTIC, 9, -5.887374392214e-01, 1.797693134862e+308, 2.7302e+00, 1.2745e-01, + 2DIAGNOSTIC, 10, -5.888679066105e-01, 1.689934791997e-04, 2.8397e+00, 1.0943e-01, + 2DIAGNOSTIC, 11, -5.888846470572e-01, 1.196541441182e-04, 2.9665e+00, 1.2685e-01, + 2DIAGNOSTIC, 12, -5.888796334158e-01, 8.417342645305e-05, 3.0894e+00, 1.2287e-01, + 2DIAGNOSTIC, 13, -5.888801827228e-01, 6.005244421302e-05, 3.2269e+00, 1.3753e-01, + 2DIAGNOSTIC, 14, -5.888863143174e-01, 4.265579317637e-05, 3.3829e+00, 1.5601e-01, + 2DIAGNOSTIC, 15, -5.888844902710e-01, 2.825708713819e-05, 3.5363e+00, 1.5338e-01, + 2DIAGNOSTIC, 16, -5.888849110302e-01, 1.933004104342e-05, 3.6728e+00, 1.3650e-01, + 2DIAGNOSTIC, 17, -5.888815801430e-01, 1.169319837126e-05, 3.8087e+00, 1.3587e-01, + 2DIAGNOSTIC, 18, -5.888785269942e-01, 5.966799414940e-06, 3.9252e+00, 1.1652e-01, + 2DIAGNOSTIC, 19, -5.888829955950e-01, 2.005916821486e-06, 4.0754e+00, 1.5026e-01, + 2DIAGNOSTIC, 20, -5.888826946314e-01, 1.535359582146e-06, 4.2070e+00, 1.3153e-01, + 2DIAGNOSTIC, 21, -5.888788451212e-01, 1.417600876540e-06, 4.3193e+00, 1.1234e-01, + 2DIAGNOSTIC, 22, -5.888803985745e-01, 1.249757727154e-06, 4.4510e+00, 1.3165e-01, + 2DIAGNOSTIC, 23, -5.888822830285e-01, 1.160994973881e-06, 4.5793e+00, 1.2834e-01, + 2DIAGNOSTIC, 24, -5.888786907304e-01, 1.148424157986e-06, 4.7086e+00, 1.2928e-01, + 2DIAGNOSTIC, 25, -5.888794468071e-01, 1.133900614049e-06, 4.8232e+00, 1.1462e-01, + 2DIAGNOSTIC, 26, -5.888791183212e-01, 1.138211232946e-06, 4.9555e+00, 1.3228e-01, + 2DIAGNOSTIC, 27, -5.888801780311e-01, 1.111052689219e-06, 5.0637e+00, 1.0824e-01, + Elapsed time (stage 1): 5.1993e+00 + + +Total elapsed time: 1.1693e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:49:24 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:49:27 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55dc07aef4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.01, 53.028, -110.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dc07af4fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f89042e0010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55dc07af0850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.01, 53.028, -110.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dc07aedf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f8900c21010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55dc07b07b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.01, 53.028, -110.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dc07af4550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f88fd562010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55dc07b0cd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.01, 53.028, -110.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dc07b0ac00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f88f9ea3010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55dc07b0ef70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.01, 53.028, -110.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dc07b0d3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f88f67e4010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55dc07b0f540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.01, 53.028, -110.953] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dc07b0f4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f88f3125010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.435275862875e-01, 1.797693134862e+308, 2.1188e-01, 2.1188e-01, + 2DIAGNOSTIC, 2, -6.467431953619e-01, 1.797693134862e+308, 2.1396e-01, 2.0850e-03, + 2DIAGNOSTIC, 3, -6.527249936507e-01, 1.797693134862e+308, 2.1598e-01, 2.0199e-03, + 2DIAGNOSTIC, 4, -6.621153333906e-01, 1.797693134862e+308, 2.1795e-01, 1.9710e-03, + 2DIAGNOSTIC, 5, -6.700794202631e-01, 1.797693134862e+308, 2.2003e-01, 2.0771e-03, + 2DIAGNOSTIC, 6, -6.754626598589e-01, 1.797693134862e+308, 2.2208e-01, 2.0540e-03, + 2DIAGNOSTIC, 7, -6.775881800104e-01, 1.797693134862e+308, 2.2412e-01, 2.0351e-03, + 2DIAGNOSTIC, 8, -6.777810218304e-01, 1.797693134862e+308, 2.2640e-01, 2.2810e-03, + 2DIAGNOSTIC, 9, -6.777416932924e-01, 1.797693134862e+308, 2.2841e-01, 2.0070e-03, + 2DIAGNOSTIC, 10, -6.783607138922e-01, 3.741067291951e-03, 2.3118e-01, 2.7771e-03, + 2DIAGNOSTIC, 11, -6.786770717944e-01, 2.683928324339e-03, 2.3474e-01, 3.5548e-03, + 2DIAGNOSTIC, 12, -6.787665823025e-01, 1.683227659097e-03, 2.3694e-01, 2.2039e-03, + 2DIAGNOSTIC, 13, -6.786536105160e-01, 8.761350825195e-04, 2.3941e-01, 2.4660e-03, + 2DIAGNOSTIC, 14, -6.785054785997e-01, 3.830423167815e-04, 2.4165e-01, 2.2399e-03, + 2DIAGNOSTIC, 15, -6.786103543499e-01, 1.460804587493e-04, 2.4426e-01, 2.6090e-03, + 2DIAGNOSTIC, 16, -6.784026338070e-01, 6.097231367720e-05, 2.4684e-01, 2.5799e-03, + 2DIAGNOSTIC, 17, -6.781739590820e-01, 2.796310763514e-05, 2.4944e-01, 2.6059e-03, + 2DIAGNOSTIC, 18, -6.782108906314e-01, 2.159675477759e-06, 2.5214e-01, 2.6951e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.869440272583e-01, 1.797693134862e+308, 4.8136e-01, 2.2922e-01, + 2DIAGNOSTIC, 2, -5.873205029666e-01, 1.797693134862e+308, 4.9469e-01, 1.3332e-02, + 2DIAGNOSTIC, 3, -5.877973483852e-01, 1.797693134862e+308, 5.0948e-01, 1.4794e-02, + 2DIAGNOSTIC, 4, -5.880450212628e-01, 1.797693134862e+308, 5.2735e-01, 1.7866e-02, + 2DIAGNOSTIC, 5, -5.881026015978e-01, 1.797693134862e+308, 5.4321e-01, 1.5860e-02, + 2DIAGNOSTIC, 6, -5.881016381268e-01, 1.797693134862e+308, 5.5909e-01, 1.5883e-02, + 2DIAGNOSTIC, 7, -5.881050951661e-01, 1.797693134862e+308, 5.7498e-01, 1.5886e-02, + 2DIAGNOSTIC, 8, -5.881497638265e-01, 1.797693134862e+308, 5.8839e-01, 1.3409e-02, + 2DIAGNOSTIC, 9, -5.882131975929e-01, 1.797693134862e+308, 6.0347e-01, 1.5086e-02, + 2DIAGNOSTIC, 10, -5.883175730162e-01, 1.205913323084e-04, 6.1802e-01, 1.4547e-02, + 2DIAGNOSTIC, 11, -5.884492483440e-01, 7.864588620773e-05, 6.3325e-01, 1.5229e-02, + 2DIAGNOSTIC, 12, -5.887672570582e-01, 6.441368902560e-05, 6.4973e-01, 1.6485e-02, + 2DIAGNOSTIC, 13, -5.891418201195e-01, 7.795283690921e-05, 6.7112e-01, 2.1383e-02, + 2DIAGNOSTIC, 14, -5.896199306439e-01, 1.074654174796e-04, 6.9318e-01, 2.2063e-02, + 2DIAGNOSTIC, 15, -5.896307997713e-01, 1.254541272818e-04, 7.0945e-01, 1.6265e-02, + 2DIAGNOSTIC, 16, -5.896010340639e-01, 1.292325248151e-04, 7.2580e-01, 1.6353e-02, + 2DIAGNOSTIC, 17, -5.895806924524e-01, 1.204500605964e-04, 7.4162e-01, 1.5820e-02, + 2DIAGNOSTIC, 18, -5.895615555350e-01, 1.021808400204e-04, 7.5599e-01, 1.4367e-02, + 2DIAGNOSTIC, 19, -5.895558060061e-01, 7.784978759469e-05, 7.7031e-01, 1.4325e-02, + 2DIAGNOSTIC, 20, -5.895605506703e-01, 5.160644783308e-05, 7.9284e-01, 2.2531e-02, + 2DIAGNOSTIC, 21, -5.895474747800e-01, 2.600808784423e-05, 8.0935e-01, 1.6504e-02, + 2DIAGNOSTIC, 22, -5.895209564379e-01, 6.763723177920e-06, 8.2445e-01, 1.5108e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.873675614268e-01, 1.797693134862e+308, 1.2066e+00, 3.8214e-01, + 2DIAGNOSTIC, 2, -4.877010388243e-01, 1.797693134862e+308, 1.3000e+00, 9.3437e-02, + 2DIAGNOSTIC, 3, -4.879593051714e-01, 1.797693134862e+308, 1.3919e+00, 9.1833e-02, + 2DIAGNOSTIC, 4, -4.881196099995e-01, 1.797693134862e+308, 1.4843e+00, 9.2433e-02, + 2DIAGNOSTIC, 5, -4.881951309910e-01, 1.797693134862e+308, 1.6143e+00, 1.3000e-01, + 2DIAGNOSTIC, 6, -4.881875995783e-01, 1.797693134862e+308, 1.7191e+00, 1.0475e-01, + 2DIAGNOSTIC, 7, -4.881755837299e-01, 1.797693134862e+308, 1.8240e+00, 1.0496e-01, + 2DIAGNOSTIC, 8, -4.881738732226e-01, 1.797693134862e+308, 1.9182e+00, 9.4179e-02, + 2DIAGNOSTIC, 9, -4.881871267833e-01, 1.797693134862e+308, 2.0180e+00, 9.9841e-02, + 2DIAGNOSTIC, 10, -4.882005863327e-01, 8.664633570445e-05, 2.1244e+00, 1.0631e-01, + 2DIAGNOSTIC, 11, -4.882143520985e-01, 4.310542523440e-05, 2.2442e+00, 1.1982e-01, + 2DIAGNOSTIC, 12, -4.882268082179e-01, 1.981023051775e-05, 2.3947e+00, 1.5052e-01, + 2DIAGNOSTIC, 13, -4.882268818736e-01, 9.954445991306e-06, 2.5017e+00, 1.0703e-01, + 2DIAGNOSTIC, 14, -4.882243239010e-01, 7.288703627914e-06, 2.6782e+00, 1.7643e-01, + 2DIAGNOSTIC, 15, -4.882241367264e-01, 7.444649455596e-06, 2.7862e+00, 1.0802e-01, + 2DIAGNOSTIC, 16, -4.882231087496e-01, 6.788221553755e-06, 2.8916e+00, 1.0541e-01, + 2DIAGNOSTIC, 17, -4.882215072406e-01, 5.305978248715e-06, 3.0098e+00, 1.1818e-01, + 2DIAGNOSTIC, 18, -4.882192840872e-01, 3.543912811321e-06, 3.1157e+00, 1.0597e-01, + 2DIAGNOSTIC, 19, -4.882195868286e-01, 2.219857999919e-06, 3.2097e+00, 9.3975e-02, + 2DIAGNOSTIC, 20, -4.882174652106e-01, 1.299248525870e-06, 3.3020e+00, 9.2249e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.270659235162e-01, 1.797693134862e+308, 4.5599e+00, 1.2579e+00, + 2DIAGNOSTIC, 2, -4.274234574166e-01, 1.797693134862e+308, 5.1215e+00, 5.6166e-01, + 2DIAGNOSTIC, 3, -4.274938586745e-01, 1.797693134862e+308, 5.6709e+00, 5.4932e-01, + 2DIAGNOSTIC, 4, -4.276489000254e-01, 1.797693134862e+308, 7.2493e+00, 1.5785e+00, + 2DIAGNOSTIC, 5, -4.276487533630e-01, 1.797693134862e+308, 7.9580e+00, 7.0868e-01, + 2DIAGNOSTIC, 6, -4.276483996006e-01, 1.797693134862e+308, 8.5911e+00, 6.3313e-01, + 2DIAGNOSTIC, 7, -4.276484656370e-01, 1.797693134862e+308, 9.2160e+00, 6.2489e-01, + 2DIAGNOSTIC, 8, -4.276484166509e-01, 1.797693134862e+308, 9.8543e+00, 6.3826e-01, + 2DIAGNOSTIC, 9, -4.276483339253e-01, 1.797693134862e+308, 1.0470e+01, 6.1550e-01, + 2DIAGNOSTIC, 10, -4.276481338260e-01, 6.213914838205e-05, 1.1085e+01, 6.1479e-01, + 2DIAGNOSTIC, 11, -4.276479030580e-01, 2.456618074469e-05, 1.1652e+01, 5.6708e-01, + 2DIAGNOSTIC, 12, -4.276475677042e-01, 1.109121521670e-05, 1.2343e+01, 6.9091e-01, + 2DIAGNOSTIC, 13, -4.276474620001e-01, 2.294409262818e-06, 1.2960e+01, 6.1774e-01, + 2DIAGNOSTIC, 14, -4.276473720766e-01, 2.125144086346e-06, 1.3532e+01, 5.7206e-01, + 2DIAGNOSTIC, 15, -4.276472922735e-01, 1.982334994446e-06, 1.4183e+01, 6.5089e-01, + 2DIAGNOSTIC, 16, -4.276470693138e-01, 1.846199276845e-06, 1.4802e+01, 6.1876e-01, + 2DIAGNOSTIC, 17, -4.276468386282e-01, 1.733048534930e-06, 1.5391e+01, 5.8930e-01, + 2DIAGNOSTIC, 18, -4.276468871497e-01, 1.645317617850e-06, 1.5953e+01, 5.6134e-01, + 2DIAGNOSTIC, 19, -4.276468262365e-01, 1.572830711692e-06, 1.6568e+01, 6.1538e-01, + 2DIAGNOSTIC, 20, -4.276467656283e-01, 1.508432037306e-06, 1.7178e+01, 6.0975e-01, + 2DIAGNOSTIC, 21, -4.276462470472e-01, 1.434542191953e-06, 1.7791e+01, 6.1364e-01, + 2DIAGNOSTIC, 22, -4.276460370478e-01, 1.358951750074e-06, 1.8438e+01, 6.4698e-01, + 2DIAGNOSTIC, 23, -4.276458411954e-01, 1.289284059569e-06, 1.9089e+01, 6.5009e-01, + 2DIAGNOSTIC, 24, -4.276456621905e-01, 1.226541378935e-06, 1.9737e+01, 6.4869e-01, + 2DIAGNOSTIC, 25, -4.276453403025e-01, 1.167619783388e-06, 2.0369e+01, 6.3162e-01, + 2DIAGNOSTIC, 26, -4.276451821072e-01, 1.113859305076e-06, 2.1005e+01, 6.3629e-01, + 2DIAGNOSTIC, 27, -4.276451218718e-01, 1.067273631861e-06, 2.1580e+01, 5.7479e-01, + 2DIAGNOSTIC, 28, -4.276451183633e-01, 1.035358201958e-06, 2.2285e+01, 7.0490e-01, + 2DIAGNOSTIC, 29, -4.276451940633e-01, 1.015360698110e-06, 2.2899e+01, 6.1380e-01, + Elapsed time (stage 0): 2.3267e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.505970345405e-01, 1.797693134862e+308, 1.8182e-01, 1.8182e-01, + 2DIAGNOSTIC, 2, -6.525088994007e-01, 1.797693134862e+308, 1.8429e-01, 2.4741e-03, + 2DIAGNOSTIC, 3, -6.550236747032e-01, 1.797693134862e+308, 1.8662e-01, 2.3301e-03, + 2DIAGNOSTIC, 4, -6.589216195251e-01, 1.797693134862e+308, 1.8896e-01, 2.3351e-03, + 2DIAGNOSTIC, 5, -6.647293735927e-01, 1.797693134862e+308, 1.9126e-01, 2.3019e-03, + 2DIAGNOSTIC, 6, -6.727157547240e-01, 1.797693134862e+308, 1.9376e-01, 2.4951e-03, + 2DIAGNOSTIC, 7, -6.757537156585e-01, 1.797693134862e+308, 1.9587e-01, 2.1160e-03, + 2DIAGNOSTIC, 8, -6.778932775273e-01, 1.797693134862e+308, 1.9851e-01, 2.6391e-03, + 2DIAGNOSTIC, 9, -6.787883843505e-01, 1.797693134862e+308, 2.0176e-01, 3.2501e-03, + 2DIAGNOSTIC, 10, -6.789503907559e-01, 3.266848525681e-03, 2.0442e-01, 2.6569e-03, + 2DIAGNOSTIC, 11, -6.808648144024e-01, 2.705241683060e-03, 2.0734e-01, 2.9261e-03, + 2DIAGNOSTIC, 12, -6.818888918839e-01, 2.098617782090e-03, 2.0980e-01, 2.4519e-03, + 2DIAGNOSTIC, 13, -6.822599998746e-01, 1.493215168735e-03, 2.1246e-01, 2.6650e-03, + 2DIAGNOSTIC, 14, -6.832597772437e-01, 9.882687777322e-04, 2.1495e-01, 2.4881e-03, + 2DIAGNOSTIC, 15, -6.846887233704e-01, 6.608629615915e-04, 2.1798e-01, 3.0282e-03, + 2DIAGNOSTIC, 16, -6.852693790009e-01, 5.381548469045e-04, 2.2064e-01, 2.6672e-03, + 2DIAGNOSTIC, 17, -6.854216668043e-01, 4.586058674556e-04, 2.2326e-01, 2.6178e-03, + 2DIAGNOSTIC, 18, -6.855022323058e-01, 3.983465264070e-04, 2.2618e-01, 2.9211e-03, + 2DIAGNOSTIC, 19, -6.856604976815e-01, 3.316182077279e-04, 2.2851e-01, 2.3270e-03, + 2DIAGNOSTIC, 20, -6.854245399035e-01, 2.380574742370e-04, 2.3090e-01, 2.3930e-03, + 2DIAGNOSTIC, 21, -6.853262772682e-01, 1.676090676809e-04, 2.3374e-01, 2.8389e-03, + 2DIAGNOSTIC, 22, -6.853831833621e-01, 1.092305479979e-04, 2.3679e-01, 3.0520e-03, + 2DIAGNOSTIC, 23, -6.854474766054e-01, 5.366501153659e-05, 2.4091e-01, 4.1130e-03, + 2DIAGNOSTIC, 24, -6.854512765765e-01, 1.481056274718e-05, 2.4344e-01, 2.5361e-03, + 2DIAGNOSTIC, 25, -6.854694638373e-01, 1.989769331037e-06, 2.4570e-01, 2.2521e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.779762331058e-01, 1.797693134862e+308, 4.6223e-01, 2.1654e-01, + 2DIAGNOSTIC, 2, -5.791405334127e-01, 1.797693134862e+308, 4.7702e-01, 1.4784e-02, + 2DIAGNOSTIC, 3, -5.805092627153e-01, 1.797693134862e+308, 4.9150e-01, 1.4486e-02, + 2DIAGNOSTIC, 4, -5.821212690904e-01, 1.797693134862e+308, 5.0605e-01, 1.4546e-02, + 2DIAGNOSTIC, 5, -5.834293646494e-01, 1.797693134862e+308, 5.2058e-01, 1.4534e-02, + 2DIAGNOSTIC, 6, -5.848017378039e-01, 1.797693134862e+308, 5.3551e-01, 1.4921e-02, + 2DIAGNOSTIC, 7, -5.861577009869e-01, 1.797693134862e+308, 5.5074e-01, 1.5234e-02, + 2DIAGNOSTIC, 8, -5.874818880522e-01, 1.797693134862e+308, 5.7587e-01, 2.5129e-02, + 2DIAGNOSTIC, 9, -5.875224012127e-01, 1.797693134862e+308, 5.9075e-01, 1.4887e-02, + 2DIAGNOSTIC, 10, -5.878265043318e-01, 1.180520159924e-03, 6.0593e-01, 1.5176e-02, + 2DIAGNOSTIC, 11, -5.880230783825e-01, 9.399285822648e-04, 6.2104e-01, 1.5111e-02, + 2DIAGNOSTIC, 12, -5.882977838824e-01, 7.126731048158e-04, 6.3629e-01, 1.5246e-02, + 2DIAGNOSTIC, 13, -5.889137475850e-01, 5.293256665728e-04, 6.5710e-01, 2.0816e-02, + 2DIAGNOSTIC, 14, -5.890645815493e-01, 3.850893673000e-04, 6.7681e-01, 1.9710e-02, + 2DIAGNOSTIC, 15, -5.890865840928e-01, 2.683326415144e-04, 6.9776e-01, 2.0943e-02, + 2DIAGNOSTIC, 16, -5.890826302144e-01, 1.828644832160e-04, 7.1448e-01, 1.6724e-02, + 2DIAGNOSTIC, 17, -5.890767777295e-01, 1.283275208160e-04, 7.3033e-01, 1.5849e-02, + 2DIAGNOSTIC, 18, -5.890719366365e-01, 1.035989916759e-04, 7.4656e-01, 1.6227e-02, + 2DIAGNOSTIC, 19, -5.890435876945e-01, 7.219037203716e-05, 7.6324e-01, 1.6679e-02, + 2DIAGNOSTIC, 20, -5.890400572821e-01, 4.485321671543e-05, 7.7729e-01, 1.4051e-02, + 2DIAGNOSTIC, 21, -5.890292774500e-01, 2.042971390816e-05, 7.9364e-01, 1.6356e-02, + 2DIAGNOSTIC, 22, -5.890402624289e-01, 2.420788218625e-06, 8.1091e-01, 1.7271e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.864260389555e-01, 1.797693134862e+308, 1.2037e+00, 3.9284e-01, + 2DIAGNOSTIC, 2, -4.871001897840e-01, 1.797693134862e+308, 1.3069e+00, 1.0316e-01, + 2DIAGNOSTIC, 3, -4.878320704423e-01, 1.797693134862e+308, 1.4079e+00, 1.0096e-01, + 2DIAGNOSTIC, 4, -4.883017228015e-01, 1.797693134862e+308, 1.5156e+00, 1.0775e-01, + 2DIAGNOSTIC, 5, -4.885211821253e-01, 1.797693134862e+308, 1.6192e+00, 1.0361e-01, + 2DIAGNOSTIC, 6, -4.887098681867e-01, 1.797693134862e+308, 1.7237e+00, 1.0447e-01, + 2DIAGNOSTIC, 7, -4.890994432517e-01, 1.797693134862e+308, 1.8574e+00, 1.3373e-01, + 2DIAGNOSTIC, 8, -4.895464862920e-01, 1.797693134862e+308, 1.9760e+00, 1.1856e-01, + 2DIAGNOSTIC, 9, -4.896398634466e-01, 1.797693134862e+308, 2.0929e+00, 1.1693e-01, + 2DIAGNOSTIC, 10, -4.897161174744e-01, 4.172047994593e-04, 2.2436e+00, 1.5064e-01, + 2DIAGNOSTIC, 11, -4.897707662700e-01, 3.095435592751e-04, 2.3536e+00, 1.1003e-01, + 2DIAGNOSTIC, 12, -4.898863321082e-01, 2.296818514419e-04, 2.4664e+00, 1.1280e-01, + 2DIAGNOSTIC, 13, -4.899180292860e-01, 1.749626612729e-04, 2.5774e+00, 1.1100e-01, + 2DIAGNOSTIC, 14, -4.899472681831e-01, 1.331333414955e-04, 2.6850e+00, 1.0755e-01, + 2DIAGNOSTIC, 15, -4.899852639095e-01, 9.516265890980e-05, 2.8348e+00, 1.4988e-01, + 2DIAGNOSTIC, 16, -4.900122761391e-01, 6.102939118605e-05, 2.9387e+00, 1.0390e-01, + 2DIAGNOSTIC, 17, -4.900294158945e-01, 3.895809281273e-05, 3.0856e+00, 1.4688e-01, + 2DIAGNOSTIC, 18, -4.900728909338e-01, 3.170385980539e-05, 3.1894e+00, 1.0379e-01, + 2DIAGNOSTIC, 19, -4.900831041588e-01, 2.557817343214e-05, 3.2961e+00, 1.0672e-01, + 2DIAGNOSTIC, 20, -4.901096082146e-01, 2.083005101478e-05, 3.4009e+00, 1.0477e-01, + 2DIAGNOSTIC, 21, -4.901392487420e-01, 1.699021702369e-05, 3.5221e+00, 1.2118e-01, + 2DIAGNOSTIC, 22, -4.901682483053e-01, 1.584959727609e-05, 3.6899e+00, 1.6784e-01, + 2DIAGNOSTIC, 23, -4.901792869523e-01, 1.451951750295e-05, 3.7939e+00, 1.0402e-01, + 2DIAGNOSTIC, 24, -4.901847230357e-01, 1.289862804342e-05, 3.9002e+00, 1.0631e-01, + 2DIAGNOSTIC, 25, -4.902021828339e-01, 1.160908979629e-05, 4.0036e+00, 1.0334e-01, + 2DIAGNOSTIC, 26, -4.902626806827e-01, 1.138418477659e-05, 4.1345e+00, 1.3094e-01, + 2DIAGNOSTIC, 27, -4.903056558275e-01, 1.145237213734e-05, 4.2558e+00, 1.2131e-01, + 2DIAGNOSTIC, 28, -4.903206913516e-01, 1.175960902320e-05, 4.3758e+00, 1.1999e-01, + 2DIAGNOSTIC, 29, -4.903323865765e-01, 1.150002846829e-05, 4.5123e+00, 1.3644e-01, + 2DIAGNOSTIC, 30, -4.903330377221e-01, 1.079369101587e-05, 4.6354e+00, 1.2312e-01, + 2DIAGNOSTIC, 31, -4.903332363838e-01, 9.742686641272e-06, 4.7563e+00, 1.2093e-01, + 2DIAGNOSTIC, 32, -4.903328735997e-01, 8.436955746940e-06, 4.8804e+00, 1.2414e-01, + 2DIAGNOSTIC, 33, -4.903319791792e-01, 6.693755499387e-06, 5.2342e+00, 3.5371e-01, + 2DIAGNOSTIC, 34, -4.903319791762e-01, 4.614125025827e-06, 5.5731e+00, 3.3892e-01, + 2DIAGNOSTIC, 35, -4.903319791762e-01, 2.576307855592e-06, 5.6923e+00, 1.1921e-01, + 2DIAGNOSTIC, 36, -4.903319791762e-01, 1.454544312610e-06, 5.8669e+00, 1.7462e-01, + 2DIAGNOSTIC, 37, -4.903319791762e-01, 1.009099905636e-06, 6.0228e+00, 1.5587e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.269279779026e-01, 1.797693134862e+308, 7.4261e+00, 1.4033e+00, + 2DIAGNOSTIC, 2, -4.271568729460e-01, 1.797693134862e+308, 8.0642e+00, 6.3812e-01, + 2DIAGNOSTIC, 3, -4.274025382731e-01, 1.797693134862e+308, 8.7496e+00, 6.8535e-01, + 2DIAGNOSTIC, 4, -4.276757870263e-01, 1.797693134862e+308, 9.4016e+00, 6.5208e-01, + 2DIAGNOSTIC, 5, -4.280965423173e-01, 1.797693134862e+308, 1.0314e+01, 9.1270e-01, + 2DIAGNOSTIC, 6, -4.281622951228e-01, 1.797693134862e+308, 1.1344e+01, 1.0295e+00, + 2DIAGNOSTIC, 7, -4.281629536057e-01, 1.797693134862e+308, 1.2054e+01, 7.1061e-01, + 2DIAGNOSTIC, 8, -4.281623304652e-01, 1.797693134862e+308, 1.2727e+01, 6.7216e-01, + 2DIAGNOSTIC, 9, -4.281620711850e-01, 1.797693134862e+308, 1.3431e+01, 7.0446e-01, + 2DIAGNOSTIC, 10, -4.281618769140e-01, 1.947642167170e-04, 1.4220e+01, 7.8929e-01, + 2DIAGNOSTIC, 11, -4.281614420734e-01, 1.261012156438e-04, 1.4998e+01, 7.7811e-01, + 2DIAGNOSTIC, 12, -4.281613441193e-01, 7.066669748866e-05, 1.5593e+01, 5.9484e-01, + 2DIAGNOSTIC, 13, -4.281609411754e-01, 3.007037207355e-05, 1.6356e+01, 7.6302e-01, + 2DIAGNOSTIC, 14, -4.281607816105e-01, 5.190185745296e-06, 1.7069e+01, 7.1236e-01, + 2DIAGNOSTIC, 15, -4.281607647067e-01, 1.908656553445e-06, 1.7754e+01, 6.8525e-01, + 2DIAGNOSTIC, 16, -4.281607452871e-01, 1.784321379081e-06, 1.8434e+01, 6.8026e-01, + 2DIAGNOSTIC, 17, -4.281606347986e-01, 1.715437037045e-06, 1.9057e+01, 6.2252e-01, + 2DIAGNOSTIC, 18, -4.281607787779e-01, 1.651312457121e-06, 1.9686e+01, 6.2980e-01, + 2DIAGNOSTIC, 19, -4.281611166806e-01, 1.607407076144e-06, 2.0368e+01, 6.8175e-01, + 2DIAGNOSTIC, 20, -4.281613620725e-01, 1.575731293738e-06, 2.1070e+01, 7.0212e-01, + 2DIAGNOSTIC, 21, -4.281614767527e-01, 1.538245394284e-06, 2.1772e+01, 7.0192e-01, + 2DIAGNOSTIC, 22, -4.281614438369e-01, 1.498562268699e-06, 2.2434e+01, 6.6194e-01, + 2DIAGNOSTIC, 23, -4.281610954216e-01, 1.435968212296e-06, 2.3099e+01, 6.6489e-01, + 2DIAGNOSTIC, 24, -4.281610342855e-01, 1.367646495783e-06, 2.3804e+01, 7.0447e-01, + 2DIAGNOSTIC, 25, -4.281609053239e-01, 1.296802777877e-06, 2.4402e+01, 5.9869e-01, + 2DIAGNOSTIC, 26, -4.281611184387e-01, 1.234227507543e-06, 2.5175e+01, 7.7325e-01, + 2DIAGNOSTIC, 27, -4.281609486432e-01, 1.168338331907e-06, 2.6211e+01, 1.0357e+00, + 2DIAGNOSTIC, 28, -4.281610221467e-01, 1.113431824760e-06, 2.6885e+01, 6.7344e-01, + 2DIAGNOSTIC, 29, -4.281608100190e-01, 1.067270091484e-06, 2.7506e+01, 6.2183e-01, + 2DIAGNOSTIC, 30, -4.281606468129e-01, 1.028757078810e-06, 2.8195e+01, 6.8819e-01, + Elapsed time (stage 1): 2.8600e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.973738681651e-01, 1.797693134862e+308, 2.6054e-01, 2.6054e-01, + 1DIAGNOSTIC, 2, -9.070951351605e-01, 1.797693134862e+308, 3.5597e-01, 9.5430e-02, + 1DIAGNOSTIC, 3, -9.144508940350e-01, 1.797693134862e+308, 4.5613e-01, 1.0016e-01, + 1DIAGNOSTIC, 4, -9.199581456362e-01, 1.797693134862e+308, 5.5437e-01, 9.8239e-02, + 1DIAGNOSTIC, 5, -9.245773445616e-01, 1.797693134862e+308, 6.4933e-01, 9.4961e-02, + 1DIAGNOSTIC, 6, -9.280732990763e-01, 1.797693134862e+308, 7.4752e-01, 9.8190e-02, + 1DIAGNOSTIC, 7, -9.311110975609e-01, 1.797693134862e+308, 8.4992e-01, 1.0240e-01, + 1DIAGNOSTIC, 8, -9.336727799314e-01, 1.797693134862e+308, 9.4720e-01, 9.7288e-02, + 1DIAGNOSTIC, 9, -9.357709739093e-01, 1.797693134862e+308, 1.0530e+00, 1.0584e-01, + 1DIAGNOSTIC, 10, -9.375531744081e-01, 2.605544669311e-03, 1.1496e+00, 9.6599e-02, + 1DIAGNOSTIC, 11, -9.389910804105e-01, 1.901489412045e-03, 1.2498e+00, 1.0014e-01, + 1DIAGNOSTIC, 12, -9.403006505078e-01, 1.425244283203e-03, 1.3520e+00, 1.0223e-01, + 1DIAGNOSTIC, 13, -9.414026590252e-01, 1.092105636057e-03, 1.4535e+00, 1.0147e-01, + 1DIAGNOSTIC, 14, -9.422987852927e-01, 8.465550812800e-04, 1.5580e+00, 1.0452e-01, + 1DIAGNOSTIC, 15, -9.430706074779e-01, 6.659855996381e-04, 1.6611e+00, 1.0309e-01, + 1DIAGNOSTIC, 16, -9.437487696160e-01, 5.262189991788e-04, 1.7593e+00, 9.8178e-02, + 1DIAGNOSTIC, 17, -9.443228737106e-01, 4.189374074334e-04, 1.8608e+00, 1.0148e-01, + 1DIAGNOSTIC, 18, -9.448399830377e-01, 3.367763523700e-04, 1.9639e+00, 1.0314e-01, + 1DIAGNOSTIC, 19, -9.452869020159e-01, 2.726864803682e-04, 2.0646e+00, 1.0069e-01, + 1DIAGNOSTIC, 20, -9.456706391606e-01, 2.225525800720e-04, 2.1634e+00, 9.8767e-02, + 1DIAGNOSTIC, 21, -9.460014787974e-01, 1.819857541086e-04, 2.2629e+00, 9.9592e-02, + 1DIAGNOSTIC, 22, -9.462850255989e-01, 1.500684781828e-04, 2.3663e+00, 1.0331e-01, + 1DIAGNOSTIC, 23, -9.465358789364e-01, 1.247401865841e-04, 2.4702e+00, 1.0396e-01, + 1DIAGNOSTIC, 24, -9.467357793217e-01, 1.036940180351e-04, 2.5642e+00, 9.4000e-02, + 1DIAGNOSTIC, 25, -9.469461583884e-01, 8.653731282852e-05, 2.6628e+00, 9.8558e-02, + 1DIAGNOSTIC, 26, -9.470889511453e-01, 7.216402648946e-05, 2.7579e+00, 9.5079e-02, + 1DIAGNOSTIC, 27, -9.472100143765e-01, 5.990781246965e-05, 2.8565e+00, 9.8632e-02, + 1DIAGNOSTIC, 28, -9.473119437361e-01, 4.962945881067e-05, 2.9610e+00, 1.0456e-01, + 1DIAGNOSTIC, 29, -9.473986821299e-01, 4.100121094662e-05, 3.0617e+00, 1.0062e-01, + 1DIAGNOSTIC, 30, -9.474500162303e-01, 3.351780014792e-05, 3.1695e+00, 1.0780e-01, + 1DIAGNOSTIC, 31, -9.475091286042e-01, 2.722167147871e-05, 3.2725e+00, 1.0303e-01, + 1DIAGNOSTIC, 32, -9.475555548751e-01, 2.192840445996e-05, 3.3763e+00, 1.0375e-01, + 1DIAGNOSTIC, 33, -9.475934158715e-01, 1.759541413549e-05, 3.4774e+00, 1.0114e-01, + 1DIAGNOSTIC, 34, -9.476180116069e-01, 1.390593875372e-05, 3.5800e+00, 1.0260e-01, + 1DIAGNOSTIC, 35, -9.476370259610e-01, 1.116534039133e-05, 3.6780e+00, 9.7974e-02, + 1DIAGNOSTIC, 36, -9.476570291019e-01, 8.956990696276e-06, 3.7811e+00, 1.0315e-01, + 1DIAGNOSTIC, 37, -9.476741301906e-01, 7.213822108349e-06, 3.8842e+00, 1.0313e-01, + 1DIAGNOSTIC, 38, -9.476887920684e-01, 5.872875252031e-06, 3.9800e+00, 9.5773e-02, + 1DIAGNOSTIC, 39, -9.477007776201e-01, 4.883499391969e-06, 4.0773e+00, 9.7306e-02, + 1DIAGNOSTIC, 40, -9.477099645020e-01, 4.007407789098e-06, 4.1827e+00, 1.0534e-01, + 1DIAGNOSTIC, 41, -9.477169590640e-01, 3.349771914095e-06, 4.2857e+00, 1.0302e-01, + 1DIAGNOSTIC, 42, -9.477217744496e-01, 2.841538343075e-06, 4.3930e+00, 1.0733e-01, + 1DIAGNOSTIC, 43, -9.477231915595e-01, 2.431697783481e-06, 4.5065e+00, 1.1343e-01, + 1DIAGNOSTIC, 44, -9.477226337471e-01, 2.043209371083e-06, 4.6152e+00, 1.0878e-01, + 1DIAGNOSTIC, 45, -9.477201349083e-01, 1.655588989517e-06, 4.7221e+00, 1.0690e-01, + 1DIAGNOSTIC, 46, -9.477158650824e-01, 1.296631921367e-06, 4.8272e+00, 1.0511e-01, + 1DIAGNOSTIC, 47, -9.477096066338e-01, 9.642551048322e-07, 4.9341e+00, 1.0690e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.991025287527e-01, 1.797693134862e+308, 5.8099e+00, 8.7581e-01, + 1DIAGNOSTIC, 2, -9.038035043095e-01, 1.797693134862e+308, 6.4744e+00, 6.6448e-01, + 1DIAGNOSTIC, 3, -9.078142592505e-01, 1.797693134862e+308, 7.1432e+00, 6.6879e-01, + 1DIAGNOSTIC, 4, -9.108626644836e-01, 1.797693134862e+308, 7.8115e+00, 6.6832e-01, + 1DIAGNOSTIC, 5, -9.131686581010e-01, 1.797693134862e+308, 8.4800e+00, 6.6843e-01, + 1DIAGNOSTIC, 6, -9.151426106740e-01, 1.797693134862e+308, 9.1470e+00, 6.6707e-01, + 1DIAGNOSTIC, 7, -9.168622820436e-01, 1.797693134862e+308, 9.8694e+00, 7.2237e-01, + 1DIAGNOSTIC, 8, -9.183848117759e-01, 1.797693134862e+308, 1.0543e+01, 6.7382e-01, + 1DIAGNOSTIC, 9, -9.196317247275e-01, 1.797693134862e+308, 1.1221e+01, 6.7821e-01, + 1DIAGNOSTIC, 10, -9.206356680776e-01, 1.433030086916e-03, 1.1894e+01, 6.7291e-01, + 1DIAGNOSTIC, 11, -9.216592212699e-01, 1.075931855878e-03, 1.2602e+01, 7.0720e-01, + 1DIAGNOSTIC, 12, -9.224787265720e-01, 8.236206308381e-04, 1.3262e+01, 6.6012e-01, + 1DIAGNOSTIC, 13, -9.232228785367e-01, 6.485683836893e-04, 1.3930e+01, 6.6872e-01, + 1DIAGNOSTIC, 14, -9.239005651175e-01, 5.218160072446e-04, 1.4597e+01, 6.6633e-01, + 1DIAGNOSTIC, 15, -9.245215882456e-01, 4.245366684115e-04, 1.5261e+01, 6.6422e-01, + 1DIAGNOSTIC, 16, -9.250876825374e-01, 3.493957828039e-04, 1.5929e+01, 6.6785e-01, + 1DIAGNOSTIC, 17, -9.256048525559e-01, 2.914182942864e-04, 1.6595e+01, 6.6575e-01, + 1DIAGNOSTIC, 18, -9.260756298456e-01, 2.471001946033e-04, 1.7253e+01, 6.5894e-01, + 1DIAGNOSTIC, 19, -9.265078801933e-01, 2.118305738324e-04, 1.7924e+01, 6.7053e-01, + 1DIAGNOSTIC, 20, -9.269031655706e-01, 1.819217564840e-04, 1.8602e+01, 6.7782e-01, + 1DIAGNOSTIC, 21, -9.272676249787e-01, 1.583020325024e-04, 1.9276e+01, 6.7410e-01, + 1DIAGNOSTIC, 22, -9.276041084393e-01, 1.382566823864e-04, 1.9936e+01, 6.6003e-01, + 1DIAGNOSTIC, 23, -9.279079872581e-01, 1.210790223584e-04, 2.0595e+01, 6.5911e-01, + 1DIAGNOSTIC, 24, -9.281815592939e-01, 1.062200258253e-04, 2.1265e+01, 6.7035e-01, + 1DIAGNOSTIC, 25, -9.284365475944e-01, 9.340141467102e-05, 2.1937e+01, 6.7192e-01, + 1DIAGNOSTIC, 26, -9.286706647176e-01, 8.229598251702e-05, 2.2602e+01, 6.6475e-01, + 1DIAGNOSTIC, 27, -9.288890485069e-01, 7.268753123655e-05, 2.3266e+01, 6.6415e-01, + 1DIAGNOSTIC, 28, -9.290877769271e-01, 6.431223714374e-05, 2.3940e+01, 6.7401e-01, + 1DIAGNOSTIC, 29, -9.292714111129e-01, 5.702542737258e-05, 2.4610e+01, 6.6959e-01, + 1DIAGNOSTIC, 30, -9.294393979496e-01, 5.065906328853e-05, 2.5273e+01, 6.6320e-01, + 1DIAGNOSTIC, 31, -9.295978807102e-01, 4.514704473458e-05, 2.5944e+01, 6.7137e-01, + 1DIAGNOSTIC, 32, -9.297492794207e-01, 4.044230132835e-05, 2.6616e+01, 6.7142e-01, + 1DIAGNOSTIC, 33, -9.298838192465e-01, 3.632598582704e-05, 2.7283e+01, 6.6738e-01, + 1DIAGNOSTIC, 34, -9.300077762918e-01, 3.265485494385e-05, 2.7947e+01, 6.6402e-01, + 1DIAGNOSTIC, 35, -9.301193221917e-01, 2.936808843789e-05, 2.8617e+01, 6.6961e-01, + 1DIAGNOSTIC, 36, -9.302257093806e-01, 2.643540802142e-05, 2.9277e+01, 6.6053e-01, + 1DIAGNOSTIC, 37, -9.303229654993e-01, 2.382336275756e-05, 2.9935e+01, 6.5806e-01, + 1DIAGNOSTIC, 38, -9.304165895724e-01, 2.150162652477e-05, 3.0603e+01, 6.6728e-01, + 1DIAGNOSTIC, 39, -9.305033209999e-01, 1.943863399401e-05, 3.1270e+01, 6.6747e-01, + 1DIAGNOSTIC, 40, -9.305774705633e-01, 1.754296836753e-05, 3.1946e+01, 6.7595e-01, + 1DIAGNOSTIC, 41, -9.306538930775e-01, 1.588384119935e-05, 3.2629e+01, 6.8324e-01, + 1DIAGNOSTIC, 42, -9.307227146048e-01, 1.445408907883e-05, 3.3297e+01, 6.6760e-01, + 1DIAGNOSTIC, 43, -9.307769963799e-01, 1.311497120172e-05, 3.3969e+01, 6.7237e-01, + 1DIAGNOSTIC, 44, -9.308340607560e-01, 1.190619478405e-05, 3.4641e+01, 6.7185e-01, + 1DIAGNOSTIC, 45, -9.308920502842e-01, 1.082630197530e-05, 3.5331e+01, 6.8986e-01, + 1DIAGNOSTIC, 46, -9.309462202230e-01, 9.884118452683e-06, 3.6003e+01, 6.7204e-01, + 1DIAGNOSTIC, 47, -9.309977173858e-01, 9.062166552058e-06, 3.6665e+01, 6.6142e-01, + 1DIAGNOSTIC, 48, -9.310465061068e-01, 8.373260456270e-06, 3.7348e+01, 6.8376e-01, + 1DIAGNOSTIC, 49, -9.310921921912e-01, 7.795923776185e-06, 3.8022e+01, 6.7324e-01, + 1DIAGNOSTIC, 50, -9.311349524621e-01, 7.264603273837e-06, 3.8721e+01, 6.9962e-01, + 1DIAGNOSTIC, 51, -9.311739257973e-01, 6.804337414634e-06, 3.9386e+01, 6.6474e-01, + 1DIAGNOSTIC, 52, -9.312137053316e-01, 6.404576787248e-06, 4.0067e+01, 6.8137e-01, + 1DIAGNOSTIC, 53, -9.312497500043e-01, 5.980699736244e-06, 4.0729e+01, 6.6225e-01, + 1DIAGNOSTIC, 54, -9.312840231649e-01, 5.568894526468e-06, 4.1394e+01, 6.6465e-01, + 1DIAGNOSTIC, 55, -9.313164024032e-01, 5.192651318688e-06, 4.2075e+01, 6.8130e-01, + 1DIAGNOSTIC, 56, -9.313467182850e-01, 4.844374965680e-06, 4.2748e+01, 6.7211e-01, + 1DIAGNOSTIC, 57, -9.313763801983e-01, 4.529258301588e-06, 4.3417e+01, 6.6939e-01, + 1DIAGNOSTIC, 58, -9.314032654903e-01, 4.238745640914e-06, 4.4081e+01, 6.6381e-01, + 1DIAGNOSTIC, 59, -9.314286842100e-01, 3.968929708661e-06, 4.4751e+01, 6.6988e-01, + 1DIAGNOSTIC, 60, -9.314440393061e-01, 3.671873848272e-06, 4.5420e+01, 6.6963e-01, + 1DIAGNOSTIC, 61, -9.314668484620e-01, 3.390412169426e-06, 4.6090e+01, 6.7017e-01, + 1DIAGNOSTIC, 62, -9.314869401090e-01, 3.134236049550e-06, 4.6756e+01, 6.6574e-01, + 1DIAGNOSTIC, 63, -9.315073433717e-01, 2.905091523290e-06, 4.7432e+01, 6.7568e-01, + 1DIAGNOSTIC, 64, -9.315265919494e-01, 2.705752642818e-06, 4.8102e+01, 6.7020e-01, + 1DIAGNOSTIC, 65, -9.315434767043e-01, 2.530239206981e-06, 4.8778e+01, 6.7580e-01, + 1DIAGNOSTIC, 66, -9.315603401243e-01, 2.380386393001e-06, 4.9457e+01, 6.7875e-01, + 1DIAGNOSTIC, 67, -9.315756516282e-01, 2.255065363603e-06, 5.0137e+01, 6.8047e-01, + 1DIAGNOSTIC, 68, -9.315907612990e-01, 2.148653465206e-06, 5.0800e+01, 6.6249e-01, + 1DIAGNOSTIC, 69, -9.316039717058e-01, 2.053961676339e-06, 5.1466e+01, 6.6651e-01, + 1DIAGNOSTIC, 70, -9.316175532129e-01, 1.933402399856e-06, 5.2144e+01, 6.7760e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.714657090990e-01, 1.797693134862e+308, 5.7784e+01, 5.6402e+00, + 1DIAGNOSTIC, 2, -8.757222240242e-01, 1.797693134862e+308, 6.3187e+01, 5.4029e+00, + 1DIAGNOSTIC, 3, -8.797968076582e-01, 1.797693134862e+308, 6.8612e+01, 5.4249e+00, + 1DIAGNOSTIC, 4, -8.835030114513e-01, 1.797693134862e+308, 7.4041e+01, 5.4289e+00, + 1DIAGNOSTIC, 5, -8.866788187842e-01, 1.797693134862e+308, 7.9407e+01, 5.3667e+00, + 1DIAGNOSTIC, 6, -8.893986314019e-01, 1.797693134862e+308, 8.4880e+01, 5.4727e+00, + 1DIAGNOSTIC, 7, -8.917407262256e-01, 1.797693134862e+308, 9.0480e+01, 5.5998e+00, + 1DIAGNOSTIC, 8, -8.936686338093e-01, 1.797693134862e+308, 9.6753e+01, 6.2735e+00, + 1DIAGNOSTIC, 9, -8.954134870599e-01, 1.797693134862e+308, 1.0337e+02, 6.6138e+00, + 1DIAGNOSTIC, 10, -8.970309425381e-01, 1.824372520158e-03, 1.0905e+02, 5.6847e+00, + 1DIAGNOSTIC, 11, -8.985716887784e-01, 1.456056437273e-03, 1.1478e+02, 5.7254e+00, + 1DIAGNOSTIC, 12, -9.000388313067e-01, 1.170122023026e-03, 1.2021e+02, 5.4287e+00, + 1DIAGNOSTIC, 13, -9.014320583558e-01, 9.559874453054e-04, 1.2568e+02, 5.4720e+00, + 1DIAGNOSTIC, 14, -9.027671673772e-01, 7.997823262266e-04, 1.3109e+02, 5.4089e+00, + 1DIAGNOSTIC, 15, -9.039775068352e-01, 6.839289463325e-04, 1.3669e+02, 5.6065e+00, + 1DIAGNOSTIC, 16, -9.050410316163e-01, 5.945884232929e-04, 1.4348e+02, 6.7873e+00, + 1DIAGNOSTIC, 17, -9.059944429947e-01, 5.223482801138e-04, 1.5001e+02, 6.5324e+00, + 1DIAGNOSTIC, 18, -9.068562031185e-01, 4.588555565615e-04, 1.5632e+02, 6.3111e+00, + 1DIAGNOSTIC, 19, -9.076451837593e-01, 4.016327179807e-04, 1.6295e+02, 6.6240e+00, + 1DIAGNOSTIC, 20, -9.083721143618e-01, 3.498005741888e-04, 1.6904e+02, 6.0892e+00, + 1DIAGNOSTIC, 21, -9.088922593255e-01, 3.012794753917e-04, 1.7560e+02, 6.5674e+00, + 1DIAGNOSTIC, 22, -9.093774393809e-01, 2.570903561191e-04, 1.8217e+02, 6.5697e+00, + 1DIAGNOSTIC, 23, -9.098318596951e-01, 2.180206468966e-04, 1.8883e+02, 6.6559e+00, + 1DIAGNOSTIC, 24, -9.102623014999e-01, 1.849251244660e-04, 1.9490e+02, 6.0721e+00, + 1DIAGNOSTIC, 25, -9.106704215071e-01, 1.574999317936e-04, 2.0103e+02, 6.1240e+00, + 1DIAGNOSTIC, 26, -9.110598236301e-01, 1.349986976663e-04, 2.0742e+02, 6.3948e+00, + 1DIAGNOSTIC, 27, -9.114243644483e-01, 1.168528911957e-04, 2.1344e+02, 6.0151e+00, + 1DIAGNOSTIC, 28, -9.117739844056e-01, 1.026077863167e-04, 2.1968e+02, 6.2463e+00, + 1DIAGNOSTIC, 29, -9.121107218782e-01, 9.185854793172e-05, 2.2638e+02, 6.7023e+00, + 1DIAGNOSTIC, 30, -9.124342478194e-01, 8.419278685555e-05, 2.3298e+02, 6.5967e+00, + 1DIAGNOSTIC, 31, -9.127415800702e-01, 7.747827294389e-05, 2.3916e+02, 6.1808e+00, + 1DIAGNOSTIC, 32, -9.130383814726e-01, 7.156050107635e-05, 2.4540e+02, 6.2335e+00, + 1DIAGNOSTIC, 33, -9.133232276659e-01, 6.629062563056e-05, 2.5173e+02, 6.3316e+00, + 1DIAGNOSTIC, 34, -9.135996245811e-01, 6.160468055939e-05, 2.5821e+02, 6.4801e+00, + 1DIAGNOSTIC, 35, -9.138667817861e-01, 5.742788006359e-05, 2.6454e+02, 6.3305e+00, + 1DIAGNOSTIC, 36, -9.141203275558e-01, 5.366794839697e-05, 2.7076e+02, 6.2180e+00, + 1DIAGNOSTIC, 37, -9.143665093729e-01, 5.022474250631e-05, 2.7707e+02, 6.3131e+00, + 1DIAGNOSTIC, 38, -9.145961865168e-01, 4.700178114050e-05, 2.8390e+02, 6.8336e+00, + 1DIAGNOSTIC, 39, -9.148154817687e-01, 4.397712433407e-05, 2.9046e+02, 6.5581e+00, + 1DIAGNOSTIC, 40, -9.150258118219e-01, 4.113632353354e-05, 2.9684e+02, 6.3790e+00, + 1DIAGNOSTIC, 41, -9.152324285245e-01, 3.847936415530e-05, 3.0326e+02, 6.4192e+00, + 1DIAGNOSTIC, 42, -9.154368908706e-01, 3.605594832509e-05, 3.1004e+02, 6.7815e+00, + 1DIAGNOSTIC, 43, -9.156318407413e-01, 3.383660262483e-05, 3.1656e+02, 6.5153e+00, + 1DIAGNOSTIC, 44, -9.158155641290e-01, 3.180096187311e-05, 3.2313e+02, 6.5755e+00, + 1DIAGNOSTIC, 45, -9.159861206068e-01, 2.990340792584e-05, 3.2975e+02, 6.6170e+00, + 1DIAGNOSTIC, 46, -9.161459869522e-01, 2.808237526181e-05, 3.3628e+02, 6.5344e+00, + 1DIAGNOSTIC, 47, -9.162967710101e-01, 2.633616076208e-05, 3.4285e+02, 6.5669e+00, + 1DIAGNOSTIC, 48, -9.164432164432e-01, 2.463481482801e-05, 3.4941e+02, 6.5580e+00, + 1DIAGNOSTIC, 49, -9.165785254850e-01, 2.294951832868e-05, 3.5517e+02, 5.7593e+00, + 1DIAGNOSTIC, 50, -9.167099305734e-01, 2.131356110740e-05, 3.6096e+02, 5.7946e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.763073968532e-01, 1.797693134862e+308, 4.0831e+02, 4.7352e+01, + 1DIAGNOSTIC, 2, -8.775550002944e-01, 1.797693134862e+308, 4.5509e+02, 4.6774e+01, + 1DIAGNOSTIC, 3, -8.792294187594e-01, 1.797693134862e+308, 5.0200e+02, 4.6916e+01, + 1DIAGNOSTIC, 4, -8.809213812389e-01, 1.797693134862e+308, 5.4765e+02, 4.5651e+01, + 1DIAGNOSTIC, 5, -8.826577113796e-01, 1.797693134862e+308, 5.9364e+02, 4.5981e+01, + 1DIAGNOSTIC, 6, -8.844732238650e-01, 1.797693134862e+308, 6.3963e+02, 4.5990e+01, + 1DIAGNOSTIC, 7, -8.861710857671e-01, 1.797693134862e+308, 6.9161e+02, 5.1988e+01, + 1DIAGNOSTIC, 8, -8.875630518032e-01, 1.797693134862e+308, 7.4406e+02, 5.2449e+01, + 1DIAGNOSTIC, 9, -8.887828921322e-01, 1.797693134862e+308, 7.9725e+02, 5.3191e+01, + 1DIAGNOSTIC, 10, -8.898524432122e-01, 1.031326110051e-03, 8.4976e+02, 5.2511e+01, + 1DIAGNOSTIC, 11, -8.906698843077e-01, 8.938974406783e-04, 9.0407e+02, 5.4303e+01, + 1DIAGNOSTIC, 12, -8.913608233661e-01, 7.507267096858e-04, 9.5251e+02, 4.8442e+01, + 1DIAGNOSTIC, 13, -8.919777994546e-01, 6.181797827582e-04, 1.0044e+03, 5.1858e+01, + 1DIAGNOSTIC, 14, -8.925454608496e-01, 4.999814909259e-04, 1.0592e+03, 5.4785e+01, + 1DIAGNOSTIC, 15, -8.930563020941e-01, 3.995870670571e-04, 1.1141e+03, 5.4913e+01, + 1DIAGNOSTIC, 16, -8.935141803499e-01, 3.203346611699e-04, 1.1678e+03, 5.3768e+01, + 1DIAGNOSTIC, 17, -8.939427210790e-01, 2.608246423364e-04, 1.2200e+03, 5.2138e+01, + 1DIAGNOSTIC, 18, -8.943344589090e-01, 2.153963499182e-04, 1.2672e+03, 4.7201e+01, + 1DIAGNOSTIC, 19, -8.946948128675e-01, 1.812467097722e-04, 1.3177e+03, 5.0489e+01, + 1DIAGNOSTIC, 20, -8.950367646004e-01, 1.561791259863e-04, 1.3651e+03, 4.7414e+01, + Elapsed time (stage 2): 1365 + + +Total elapsed time: 1417 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:41 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:41 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:43 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:48 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:51 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:51 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5984 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:52 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:56 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:56 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6106 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:56 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:00 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6229 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:00 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6260 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:00 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:42 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:44 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:44 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:48 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:49 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:52 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:52 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:53 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:54 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:56 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:56 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:56 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:56 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:57 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:57 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:57 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:57 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:07 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:19 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC006 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:19 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC006 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:19 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC006 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:20 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8776 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:22 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:22 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8816 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:24 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:24 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC006_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 80.367 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/logs/proc_func_18-03-2024-24581.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:58 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC006 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/QC/sub-PNC006_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC006* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 80.400 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC006_ses-02 +========================reprocessing without filter=================== +sub-PNC006_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC006 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC006 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC006 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC006 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:16:17 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:16:17 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz is 42.000008 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:18:27 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:20:38 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:20:53 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.78 (mm) at sub-brick 2 +++ Max delta displ in automask = 0.19 (mm) at sub-brick 105 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:34:18 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:34:36 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz is 42.000008 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:36:45 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:38:52 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz is 42.000008 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:41:03 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -1.072 -1.641 2.638 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.2 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -1.680 -2.771 5.421 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.0 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:45:46 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:46:13 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x556fd441f6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 52.2894, -119.477] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556fd4296730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x556fd4436320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x556fd4422fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [84.9958, 113.5, -132.754] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556fd4428e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x556fd4c33230 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x556fd4c315c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 52.2894, -119.477] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556fd44253f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x556fd586d450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x556fd4c2fda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [92, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [84.9958, 113.5, -132.754] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556fd442c360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x556fd6067780 + Container manages memory: true + Size: 1601536 + Capacity: 1601536 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.602500143589e-01, 1.797693134862e+308, 4.6277e-02, 4.6277e-02, + 2DIAGNOSTIC, 2, -5.633343746277e-01, 1.797693134862e+308, 4.7467e-02, 1.1899e-03, + 2DIAGNOSTIC, 3, -5.660904376872e-01, 1.797693134862e+308, 4.8737e-02, 1.2701e-03, + 2DIAGNOSTIC, 4, -5.671333029006e-01, 1.797693134862e+308, 5.0040e-02, 1.3032e-03, + 2DIAGNOSTIC, 5, -5.680343259677e-01, 1.797693134862e+308, 5.1370e-02, 1.3299e-03, + 2DIAGNOSTIC, 6, -5.696071864579e-01, 1.797693134862e+308, 5.2702e-02, 1.3320e-03, + 2DIAGNOSTIC, 7, -5.718513526047e-01, 1.797693134862e+308, 5.4027e-02, 1.3249e-03, + 2DIAGNOSTIC, 8, -5.787173299732e-01, 1.797693134862e+308, 5.5335e-02, 1.3080e-03, + 2DIAGNOSTIC, 9, -5.938007429800e-01, 1.797693134862e+308, 5.6654e-02, 1.3189e-03, + 2DIAGNOSTIC, 10, -6.602813145975e-01, 6.765013492568e-03, 5.8612e-02, 1.9581e-03, + 2DIAGNOSTIC, 11, -6.908801460076e-01, 1.024611958920e-02, 6.0322e-02, 1.7099e-03, + 2DIAGNOSTIC, 12, -7.073783798151e-01, 1.289923713011e-02, 6.2249e-02, 1.9271e-03, + 2DIAGNOSTIC, 13, -7.122466279743e-01, 1.422328005974e-02, 6.3964e-02, 1.7152e-03, + 2DIAGNOSTIC, 14, -7.185917027493e-01, 1.428739366113e-02, 6.6125e-02, 2.1610e-03, + 2DIAGNOSTIC, 15, -7.227399800957e-01, 1.316746763515e-02, 6.7813e-02, 1.6880e-03, + 2DIAGNOSTIC, 16, -7.299486295131e-01, 1.123773642872e-02, 6.9556e-02, 1.7421e-03, + 2DIAGNOSTIC, 17, -7.284127330272e-01, 8.579545941078e-03, 7.1271e-02, 1.7159e-03, + 2DIAGNOSTIC, 18, -7.357685406415e-01, 5.839691389018e-03, 7.6890e-02, 5.6190e-03, + 2DIAGNOSTIC, 19, -7.357685349339e-01, 3.205204611911e-03, 7.8341e-02, 1.4510e-03, + 2DIAGNOSTIC, 20, -7.357686099243e-01, 2.010158725671e-03, 7.9829e-02, 1.4870e-03, + 2DIAGNOSTIC, 21, -7.357687367058e-01, 1.382750036172e-03, 8.1323e-02, 1.4949e-03, + 2DIAGNOSTIC, 22, -7.357689510157e-01, 1.014006877726e-03, 8.2777e-02, 1.4532e-03, + 2DIAGNOSTIC, 23, -7.357693131940e-01, 6.750790989641e-04, 8.4260e-02, 1.4830e-03, + 2DIAGNOSTIC, 24, -7.357699250144e-01, 4.160508699260e-04, 8.5707e-02, 1.4472e-03, + 2DIAGNOSTIC, 25, -7.357709578301e-01, 2.099300376292e-04, 8.7174e-02, 1.4670e-03, + 2DIAGNOSTIC, 26, -7.357726992767e-01, 1.214008532881e-04, 8.8711e-02, 1.5371e-03, + 2DIAGNOSTIC, 27, -7.357756297135e-01, 1.491531596232e-06, 9.0196e-02, 1.4851e-03, + 2DIAGNOSTIC, 28, -7.357805443507e-01, 1.568370016941e-06, 9.1679e-02, 1.4830e-03, + 2DIAGNOSTIC, 29, -7.357887398588e-01, 1.725584276538e-06, 9.3129e-02, 1.4501e-03, + 2DIAGNOSTIC, 30, -7.358022752867e-01, 2.008888200185e-06, 9.4585e-02, 1.4560e-03, + 2DIAGNOSTIC, 31, -7.358242686310e-01, 2.485745123217e-06, 9.6113e-02, 1.5280e-03, + 2DIAGNOSTIC, 32, -7.358590451955e-01, 3.250408303471e-06, 9.7579e-02, 1.4660e-03, + 2DIAGNOSTIC, 33, -7.359115465976e-01, 4.416651576612e-06, 9.9043e-02, 1.4639e-03, + 2DIAGNOSTIC, 34, -7.359847682932e-01, 6.078077717651e-06, 1.0054e-01, 1.4951e-03, + 2DIAGNOSTIC, 35, -7.360744961257e-01, 8.215163594727e-06, 1.0200e-01, 1.4582e-03, + 2DIAGNOSTIC, 36, -7.357701081086e-01, 6.053900945782e-06, 1.0349e-01, 1.4980e-03, + 2DIAGNOSTIC, 37, -7.358672458905e-01, 4.760547303865e-06, 1.0498e-01, 1.4861e-03, + 2DIAGNOSTIC, 38, -7.359903153894e-01, 4.494477550757e-06, 1.0643e-01, 1.4451e-03, + 2DIAGNOSTIC, 39, -7.361747604197e-01, 5.837014703847e-06, 1.0793e-01, 1.5008e-03, + 2DIAGNOSTIC, 40, -7.365179273389e-01, 1.026756793651e-05, 1.0962e-01, 1.6949e-03, + 2DIAGNOSTIC, 41, -7.368535445073e-01, 1.713725193297e-05, 1.1134e-01, 1.7180e-03, + 2DIAGNOSTIC, 42, -7.362784320624e-01, 1.682253944382e-05, 1.1307e-01, 1.7271e-03, + 2DIAGNOSTIC, 43, -7.368419302489e-01, 2.100191028815e-05, 1.1533e-01, 2.2600e-03, + 2DIAGNOSTIC, 44, -7.367242104102e-01, 2.238720195187e-05, 1.1680e-01, 1.4760e-03, + 2DIAGNOSTIC, 45, -7.369976476697e-01, 2.497166392869e-05, 1.1830e-01, 1.4951e-03, + 2DIAGNOSTIC, 46, -7.376653742909e-01, 2.830528692542e-05, 1.2022e-01, 1.9269e-03, + 2DIAGNOSTIC, 47, -7.380521585294e-01, 3.297177305550e-05, 1.2172e-01, 1.4968e-03, + 2DIAGNOSTIC, 48, -7.383145901161e-01, 3.759506199386e-05, 1.2346e-01, 1.7350e-03, + 2DIAGNOSTIC, 49, -7.414355330781e-01, 6.574483069749e-05, 1.2563e-01, 2.1698e-03, + 2DIAGNOSTIC, 50, -7.416173792499e-01, 8.996561114276e-05, 1.2735e-01, 1.7240e-03, + 2DIAGNOSTIC, 51, -7.419645864499e-01, 1.103928411113e-04, 1.2880e-01, 1.4539e-03, + 2DIAGNOSTIC, 52, -7.422074800067e-01, 1.170501463610e-04, 1.3049e-01, 1.6870e-03, + 2DIAGNOSTIC, 53, -7.425129810205e-01, 1.188968189524e-04, 1.3269e-01, 2.2030e-03, + 2DIAGNOSTIC, 54, -7.431586850229e-01, 1.129092567556e-04, 1.3500e-01, 2.3081e-03, + 2DIAGNOSTIC, 55, -7.443851021148e-01, 1.070803775898e-04, 1.3716e-01, 2.1610e-03, + 2DIAGNOSTIC, 56, -7.435715251207e-01, 9.030165129068e-05, 1.3933e-01, 2.1679e-03, + 2DIAGNOSTIC, 57, -7.432330370180e-01, 6.639964615452e-05, 1.4111e-01, 1.7829e-03, + 2DIAGNOSTIC, 58, -7.433301173649e-01, 3.904387817279e-05, 1.4262e-01, 1.5020e-03, + 2DIAGNOSTIC, 59, -7.434799692893e-01, 3.097251738500e-05, 1.4410e-01, 1.4801e-03, + 2DIAGNOSTIC, 60, -7.436934688703e-01, 2.269647171952e-05, 1.4564e-01, 1.5399e-03, + 2DIAGNOSTIC, 61, -7.463845377978e-01, 3.261836023517e-05, 1.4740e-01, 1.7681e-03, + 2DIAGNOSTIC, 62, -7.463937867712e-01, 4.046000184706e-05, 1.4962e-01, 2.2159e-03, + 2DIAGNOSTIC, 63, -7.464563303080e-01, 4.664823315335e-05, 1.5109e-01, 1.4658e-03, + 2DIAGNOSTIC, 64, -7.465498134794e-01, 5.273525621124e-05, 1.5282e-01, 1.7359e-03, + 2DIAGNOSTIC, 65, -7.444172277260e-01, 4.806799604421e-05, 1.5475e-01, 1.9250e-03, + 2DIAGNOSTIC, 66, -7.445007966032e-01, 3.474077848319e-05, 1.5647e-01, 1.7240e-03, + 2DIAGNOSTIC, 67, -7.443272634580e-01, 1.528025318387e-05, 1.5815e-01, 1.6801e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.594029286037e-01, 1.797693134862e+308, 2.1594e-01, 5.7788e-02, + 2DIAGNOSTIC, 2, -3.603157733316e-01, 1.797693134862e+308, 2.1816e-01, 2.2261e-03, + 2DIAGNOSTIC, 3, -3.626844690435e-01, 1.797693134862e+308, 2.2122e-01, 3.0510e-03, + 2DIAGNOSTIC, 4, -3.650822570318e-01, 1.797693134862e+308, 2.2411e-01, 2.8970e-03, + 2DIAGNOSTIC, 5, -3.675006975003e-01, 1.797693134862e+308, 2.2687e-01, 2.7549e-03, + 2DIAGNOSTIC, 6, -3.706358111318e-01, 1.797693134862e+308, 2.3005e-01, 3.1781e-03, + 2DIAGNOSTIC, 7, -3.713948153786e-01, 1.797693134862e+308, 2.3285e-01, 2.8019e-03, + 2DIAGNOSTIC, 8, -3.741152344121e-01, 1.797693134862e+308, 2.3678e-01, 3.9310e-03, + 2DIAGNOSTIC, 9, -3.838931062204e-01, 1.797693134862e+308, 2.3965e-01, 2.8710e-03, + 2DIAGNOSTIC, 10, -3.869715860783e-01, 4.583081567085e-03, 2.4226e-01, 2.6140e-03, + 2DIAGNOSTIC, 11, -3.887188407576e-01, 4.591271740671e-03, 2.4493e-01, 2.6691e-03, + 2DIAGNOSTIC, 12, -4.193863051529e-01, 6.156761823354e-03, 2.4758e-01, 2.6500e-03, + 2DIAGNOSTIC, 13, -4.253884672056e-01, 7.328100566905e-03, 2.5035e-01, 2.7690e-03, + 2DIAGNOSTIC, 14, -4.568320018425e-01, 9.393888836051e-03, 2.5335e-01, 2.9960e-03, + 2DIAGNOSTIC, 15, -4.884392353186e-01, 1.185700307169e-02, 2.5624e-01, 2.8870e-03, + 2DIAGNOSTIC, 16, -5.004955080737e-01, 1.350555031073e-02, 2.6199e-01, 5.7511e-03, + 2DIAGNOSTIC, 17, -4.998136124189e-01, 1.369789936114e-02, 2.6442e-01, 2.4319e-03, + 2DIAGNOSTIC, 18, -5.032352503625e-01, 1.285082386208e-02, 2.6679e-01, 2.3720e-03, + 2DIAGNOSTIC, 19, -5.132163107172e-01, 1.162711725869e-02, 2.6919e-01, 2.4009e-03, + 2DIAGNOSTIC, 20, -5.230143103169e-01, 9.890543874371e-03, 2.7157e-01, 2.3839e-03, + 2DIAGNOSTIC, 21, -5.306381691420e-01, 7.714776742873e-03, 2.7397e-01, 2.3980e-03, + 2DIAGNOSTIC, 22, -5.378404071068e-01, 6.222834511430e-03, 2.7636e-01, 2.3870e-03, + 2DIAGNOSTIC, 23, -5.569608590684e-01, 5.007078726672e-03, 2.7911e-01, 2.7540e-03, + 2DIAGNOSTIC, 24, -5.691507974119e-01, 4.583924265471e-03, 2.8506e-01, 5.9500e-03, + 2DIAGNOSTIC, 25, -5.694023175969e-01, 4.574426522490e-03, 2.8807e-01, 3.0069e-03, + 2DIAGNOSTIC, 26, -5.695871290504e-01, 4.447807501520e-03, 2.9064e-01, 2.5690e-03, + 2DIAGNOSTIC, 27, -5.696794348304e-01, 3.908058345601e-03, 2.9364e-01, 2.9991e-03, + 2DIAGNOSTIC, 28, -5.697409679622e-01, 3.117928772415e-03, 2.9662e-01, 2.9840e-03, + 2DIAGNOSTIC, 29, -5.693797311670e-01, 2.298527567461e-03, 2.9913e-01, 2.5032e-03, + 2DIAGNOSTIC, 30, -5.698018289604e-01, 1.539865762127e-03, 3.0158e-01, 2.4550e-03, + 2DIAGNOSTIC, 31, -5.706920305072e-01, 8.653951493964e-04, 3.0433e-01, 2.7511e-03, + 2DIAGNOSTIC, 32, -5.713444246363e-01, 2.994333382990e-04, 3.0806e-01, 3.7260e-03, + 2DIAGNOSTIC, 33, -5.709794568833e-01, 7.873961810777e-05, 3.1080e-01, 2.7409e-03, + 2DIAGNOSTIC, 34, -5.710284523865e-01, 7.993516577248e-05, 3.1322e-01, 2.4209e-03, + 2DIAGNOSTIC, 35, -5.711054685507e-01, 7.900363595550e-05, 3.1565e-01, 2.4309e-03, + 2DIAGNOSTIC, 36, -5.713982735399e-01, 7.797308803104e-05, 3.1843e-01, 2.7750e-03, + 2DIAGNOSTIC, 37, -5.718816801071e-01, 7.849623708369e-05, 3.2153e-01, 3.1061e-03, + 2DIAGNOSTIC, 38, -5.720397082228e-01, 7.536781061691e-05, 3.2396e-01, 2.4309e-03, + 2DIAGNOSTIC, 39, -5.720946616042e-01, 6.105798486439e-05, 3.2646e-01, 2.4989e-03, + 2DIAGNOSTIC, 40, -5.725286822278e-01, 5.392913493008e-05, 3.2893e-01, 2.4731e-03, + 2DIAGNOSTIC, 41, -5.778910134434e-01, 1.290379635108e-04, 3.3223e-01, 3.2909e-03, + 2DIAGNOSTIC, 42, -5.781183451962e-01, 1.977971076941e-04, 3.3535e-01, 3.1230e-03, + 2DIAGNOSTIC, 43, -5.798317147256e-01, 2.627864842001e-04, 3.3815e-01, 2.7971e-03, + 2DIAGNOSTIC, 44, -5.804404871149e-01, 3.084845782044e-04, 3.4671e-01, 8.5659e-03, + 2DIAGNOSTIC, 45, -5.804404861064e-01, 3.232241479390e-04, 3.4921e-01, 2.4972e-03, + 2DIAGNOSTIC, 46, -5.804405128128e-01, 3.092210721647e-04, 3.5173e-01, 2.5170e-03, + 2DIAGNOSTIC, 47, -5.804405579649e-01, 2.720327028831e-04, 3.5427e-01, 2.5480e-03, + 2DIAGNOSTIC, 48, -5.804406342934e-01, 2.132443522246e-04, 3.5718e-01, 2.9070e-03, + 2DIAGNOSTIC, 49, -5.804407632979e-01, 1.379616680793e-04, 3.5995e-01, 2.7709e-03, + 2DIAGNOSTIC, 50, -5.804409812548e-01, 5.641837734752e-05, 3.6256e-01, 2.6031e-03, + 2DIAGNOSTIC, 51, -5.804413492805e-01, 3.176840820807e-05, 3.6525e-01, 2.6901e-03, + 2DIAGNOSTIC, 52, -5.804419700768e-01, 7.198486856170e-06, 3.6781e-01, 2.5668e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.561741554202e-01, 1.797693134862e+308, 4.4150e-01, 7.3689e-02, + 2DIAGNOSTIC, 2, -4.568416531108e-01, 1.797693134862e+308, 4.5424e-01, 1.2738e-02, + 2DIAGNOSTIC, 3, -4.581892496578e-01, 1.797693134862e+308, 4.6867e-01, 1.4426e-02, + 2DIAGNOSTIC, 4, -4.595299156336e-01, 1.797693134862e+308, 4.8124e-01, 1.2578e-02, + 2DIAGNOSTIC, 5, -4.617527220038e-01, 1.797693134862e+308, 4.9388e-01, 1.2632e-02, + 2DIAGNOSTIC, 6, -4.667062839564e-01, 1.797693134862e+308, 5.0719e-01, 1.3314e-02, + 2DIAGNOSTIC, 7, -4.690281038510e-01, 1.797693134862e+308, 5.2011e-01, 1.2926e-02, + 2DIAGNOSTIC, 8, -4.695412788829e-01, 1.797693134862e+308, 5.3504e-01, 1.4922e-02, + 2DIAGNOSTIC, 9, -4.708453933850e-01, 1.797693134862e+308, 5.5012e-01, 1.5079e-02, + 2DIAGNOSTIC, 10, -4.713160158292e-01, 2.489975777840e-03, 5.6694e-01, 1.6820e-02, + 2DIAGNOSTIC, 11, -4.718094142919e-01, 2.137915821131e-03, 5.8168e-01, 1.4746e-02, + 2DIAGNOSTIC, 12, -4.722428167175e-01, 1.708383964109e-03, 5.9703e-01, 1.5348e-02, + 2DIAGNOSTIC, 13, -4.730520348152e-01, 1.295303179111e-03, 6.1145e-01, 1.4421e-02, + 2DIAGNOSTIC, 14, -4.734290679719e-01, 8.994065288012e-04, 6.2461e-01, 1.3162e-02, + 2DIAGNOSTIC, 15, -4.738161026502e-01, 5.764433189817e-04, 6.3777e-01, 1.3153e-02, + 2DIAGNOSTIC, 16, -4.742313437522e-01, 4.441314908017e-04, 6.5363e-01, 1.5864e-02, + 2DIAGNOSTIC, 17, -4.750811705758e-01, 4.000707541670e-04, 6.7357e-01, 1.9945e-02, + 2DIAGNOSTIC, 18, -4.751588787496e-01, 3.423462243533e-04, 6.8445e-01, 1.0874e-02, + 2DIAGNOSTIC, 19, -4.753759532507e-01, 3.079069627719e-04, 6.9724e-01, 1.2793e-02, + 2DIAGNOSTIC, 20, -4.754454636669e-01, 2.649906786088e-04, 7.0998e-01, 1.2738e-02, + 2DIAGNOSTIC, 21, -4.754871809289e-01, 2.169456627367e-04, 7.2133e-01, 1.1355e-02, + 2DIAGNOSTIC, 22, -4.755615168956e-01, 1.664926848391e-04, 7.3642e-01, 1.5084e-02, + 2DIAGNOSTIC, 23, -4.756675432475e-01, 1.289822611031e-04, 7.4883e-01, 1.2416e-02, + 2DIAGNOSTIC, 24, -4.758189874447e-01, 9.604607318484e-05, 7.6054e-01, 1.1710e-02, + 2DIAGNOSTIC, 25, -4.757961715564e-01, 6.558495964513e-05, 7.9550e-01, 3.4957e-02, + 2DIAGNOSTIC, 26, -4.757961715064e-01, 4.070187055059e-05, 8.0583e-01, 1.0328e-02, + 2DIAGNOSTIC, 27, -4.757961737486e-01, 3.301266510818e-05, 8.1617e-01, 1.0338e-02, + 2DIAGNOSTIC, 28, -4.757961775390e-01, 2.438679974135e-05, 8.2710e-01, 1.0931e-02, + 2DIAGNOSTIC, 29, -4.757961839455e-01, 1.861864671717e-05, 8.3853e-01, 1.1427e-02, + 2DIAGNOSTIC, 30, -4.757961947700e-01, 1.300627874108e-05, 8.5041e-01, 1.1889e-02, + 2DIAGNOSTIC, 31, -4.757962130488e-01, 7.474766014023e-06, 8.6223e-01, 1.1813e-02, + 2DIAGNOSTIC, 32, -4.757962438861e-01, 3.053034656531e-06, 8.7290e-01, 1.0668e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.091050520820e-01, 1.797693134862e+308, 1.0793e+00, 2.0639e-01, + Elapsed time (stage 0): 1.1111e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.068055664126e-01, 1.797693134862e+308, 3.9816e-02, 3.9816e-02, + 2DIAGNOSTIC, 2, -9.093862997726e-01, 1.797693134862e+308, 4.1068e-02, 1.2522e-03, + 2DIAGNOSTIC, 3, -9.130142302003e-01, 1.797693134862e+308, 4.2388e-02, 1.3201e-03, + 2DIAGNOSTIC, 4, -9.177860178489e-01, 1.797693134862e+308, 4.3661e-02, 1.2729e-03, + 2DIAGNOSTIC, 5, -9.240382292337e-01, 1.797693134862e+308, 4.4925e-02, 1.2639e-03, + 2DIAGNOSTIC, 6, -9.306950920860e-01, 1.797693134862e+308, 4.6445e-02, 1.5199e-03, + 2DIAGNOSTIC, 7, -9.405956467020e-01, 1.797693134862e+308, 4.8181e-02, 1.7362e-03, + 2DIAGNOSTIC, 8, -9.523708524722e-01, 1.797693134862e+308, 4.9697e-02, 1.5159e-03, + 2DIAGNOSTIC, 9, -9.547979108252e-01, 1.797693134862e+308, 5.1000e-02, 1.3032e-03, + 2DIAGNOSTIC, 10, -9.580247531900e-01, 3.981140107569e-03, 5.2520e-02, 1.5192e-03, + 2DIAGNOSTIC, 11, -9.624822022981e-01, 3.690890987595e-03, 5.4483e-02, 1.9631e-03, + 2DIAGNOSTIC, 12, -9.652761603215e-01, 3.249922434940e-03, 5.6219e-02, 1.7359e-03, + 2DIAGNOSTIC, 13, -9.663778243988e-01, 2.692171669807e-03, 5.7757e-02, 1.5380e-03, + 2DIAGNOSTIC, 14, -9.753033687864e-01, 2.267453505858e-03, 5.9836e-02, 2.0790e-03, + 2DIAGNOSTIC, 15, -9.787231256242e-01, 1.885620020709e-03, 6.2142e-02, 2.3060e-03, + 2DIAGNOSTIC, 16, -9.905643233003e-01, 1.723635909098e-03, 6.4663e-02, 2.5210e-03, + 2DIAGNOSTIC, 17, -9.916542335027e-01, 1.608560147609e-03, 6.6904e-02, 2.2409e-03, + 2DIAGNOSTIC, 18, -9.866638301687e-01, 1.474189857753e-03, 6.8725e-02, 1.8210e-03, + 2DIAGNOSTIC, 19, -9.874816181799e-01, 1.272099932960e-03, 7.0553e-02, 1.8280e-03, + 2DIAGNOSTIC, 20, -9.900792863914e-01, 1.055463540888e-03, 7.2152e-02, 1.5991e-03, + 2DIAGNOSTIC, 21, -9.921420486319e-01, 8.503065486458e-04, 7.3958e-02, 1.8060e-03, + 2DIAGNOSTIC, 22, -9.995649985056e-01, 7.237785238796e-04, 7.6687e-02, 2.7289e-03, + 2DIAGNOSTIC, 23, -9.998457909155e-01, 5.578684482727e-04, 7.8270e-02, 1.5831e-03, + 2DIAGNOSTIC, 24, -1.001011353729e+00, 4.805441927432e-04, 8.0019e-02, 1.7490e-03, + 2DIAGNOSTIC, 25, -1.001527851897e+00, 4.067594308827e-04, 8.1604e-02, 1.5850e-03, + 2DIAGNOSTIC, 26, -9.964940523327e-01, 3.762916995017e-04, 8.3147e-02, 1.5430e-03, + 2DIAGNOSTIC, 27, -9.961369221030e-01, 3.233681150528e-04, 8.4921e-02, 1.7741e-03, + 2DIAGNOSTIC, 28, -9.960221122657e-01, 1.900216529740e-04, 8.6473e-02, 1.5521e-03, + 2DIAGNOSTIC, 29, -9.962766568210e-01, 5.882313218719e-05, 8.8097e-02, 1.6241e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.608728579240e-01, 1.797693134862e+308, 1.3861e-01, 5.0516e-02, + 2DIAGNOSTIC, 2, -6.607522054667e-01, 1.797693134862e+308, 1.4218e-01, 3.5670e-03, + 2DIAGNOSTIC, 3, -6.635223507390e-01, 1.797693134862e+308, 1.4533e-01, 3.1481e-03, + 2DIAGNOSTIC, 4, -6.675597993951e-01, 1.797693134862e+308, 1.4774e-01, 2.4128e-03, + 2DIAGNOSTIC, 5, -6.742140839119e-01, 1.797693134862e+308, 1.5002e-01, 2.2771e-03, + 2DIAGNOSTIC, 6, -6.864283280462e-01, 1.797693134862e+308, 1.5234e-01, 2.3220e-03, + 2DIAGNOSTIC, 7, -7.230402450670e-01, 1.797693134862e+308, 1.5474e-01, 2.4011e-03, + 2DIAGNOSTIC, 8, -7.410690872800e-01, 1.797693134862e+308, 1.5788e-01, 3.1390e-03, + 2DIAGNOSTIC, 9, -7.650324025990e-01, 1.797693134862e+308, 1.6058e-01, 2.6989e-03, + 2DIAGNOSTIC, 10, -7.674386545939e-01, 1.135665327320e-02, 1.6352e-01, 2.9430e-03, + 2DIAGNOSTIC, 11, -7.685340242784e-01, 1.112012307662e-02, 1.6648e-01, 2.9571e-03, + 2DIAGNOSTIC, 12, -7.691421888965e-01, 9.943177432092e-03, 1.6950e-01, 3.0248e-03, + 2DIAGNOSTIC, 13, -7.695899366772e-01, 8.156112911539e-03, 1.7250e-01, 3.0000e-03, + 2DIAGNOSTIC, 14, -7.702222056946e-01, 6.038649454306e-03, 1.7612e-01, 3.6130e-03, + 2DIAGNOSTIC, 15, -7.705017957653e-01, 3.860938190543e-03, 1.7909e-01, 2.9740e-03, + 2DIAGNOSTIC, 16, -7.706812275179e-01, 1.910916443290e-03, 1.8175e-01, 2.6579e-03, + 2DIAGNOSTIC, 17, -7.709176509399e-01, 8.682994470677e-04, 1.8467e-01, 2.9249e-03, + 2DIAGNOSTIC, 18, -7.710748579135e-01, 2.463174445492e-04, 1.8727e-01, 2.5990e-03, + 2DIAGNOSTIC, 19, -7.712367915549e-01, 1.611719043701e-04, 1.9028e-01, 3.0081e-03, + 2DIAGNOSTIC, 20, -7.714956283929e-01, 1.212033525938e-04, 1.9325e-01, 2.9671e-03, + 2DIAGNOSTIC, 21, -7.716769857486e-01, 9.736355645350e-05, 1.9632e-01, 3.0670e-03, + 2DIAGNOSTIC, 22, -7.719499556472e-01, 8.217276046320e-05, 2.0000e-01, 3.6869e-03, + 2DIAGNOSTIC, 23, -7.719421241790e-01, 6.787880149560e-05, 2.0264e-01, 2.6379e-03, + 2DIAGNOSTIC, 24, -7.720539342731e-01, 6.049017042716e-05, 2.0530e-01, 2.6610e-03, + 2DIAGNOSTIC, 25, -7.722510147620e-01, 5.540294138369e-05, 2.0793e-01, 2.6331e-03, + 2DIAGNOSTIC, 26, -7.727432716779e-01, 5.533721324255e-05, 2.1056e-01, 2.6228e-03, + 2DIAGNOSTIC, 27, -7.732212507866e-01, 6.009119470701e-05, 2.1412e-01, 3.5639e-03, + 2DIAGNOSTIC, 28, -7.732523746795e-01, 6.144996038761e-05, 2.1799e-01, 3.8671e-03, + 2DIAGNOSTIC, 29, -7.731987199328e-01, 5.857182024767e-05, 2.2068e-01, 2.6891e-03, + 2DIAGNOSTIC, 30, -7.732129468321e-01, 5.395215875228e-05, 2.2332e-01, 2.6422e-03, + 2DIAGNOSTIC, 31, -7.732227138627e-01, 4.676834519935e-05, 2.2595e-01, 2.6262e-03, + 2DIAGNOSTIC, 32, -7.732333504590e-01, 3.900761655271e-05, 2.2859e-01, 2.6422e-03, + 2DIAGNOSTIC, 33, -7.733782402818e-01, 2.976434424046e-05, 2.3184e-01, 3.2511e-03, + 2DIAGNOSTIC, 34, -7.734294559719e-01, 2.022190619119e-05, 2.3475e-01, 2.9080e-03, + 2DIAGNOSTIC, 35, -7.734348953470e-01, 1.151959453449e-05, 2.3736e-01, 2.6109e-03, + 2DIAGNOSTIC, 36, -7.733862332808e-01, 6.842281599161e-06, 2.4025e-01, 2.8899e-03, + 2DIAGNOSTIC, 37, -7.733953726560e-01, 6.833343378886e-06, 2.4313e-01, 2.8870e-03, + 2DIAGNOSTIC, 38, -7.733486678060e-01, 6.088399354905e-06, 2.4567e-01, 2.5320e-03, + 2DIAGNOSTIC, 39, -7.733078037690e-01, 3.962266987491e-06, 2.4853e-01, 2.8670e-03, + 2DIAGNOSTIC, 40, -7.732670757791e-01, 1.424614064573e-06, 2.5115e-01, 2.6190e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.096059068805e-01, 1.797693134862e+308, 3.2145e-01, 7.0294e-02, + 2DIAGNOSTIC, 2, -6.098512388049e-01, 1.797693134862e+308, 3.3472e-01, 1.3277e-02, + 2DIAGNOSTIC, 3, -6.101598095209e-01, 1.797693134862e+308, 3.4791e-01, 1.3190e-02, + 2DIAGNOSTIC, 4, -6.105708077152e-01, 1.797693134862e+308, 3.6116e-01, 1.3242e-02, + 2DIAGNOSTIC, 5, -6.109302426666e-01, 1.797693134862e+308, 3.7428e-01, 1.3129e-02, + 2DIAGNOSTIC, 6, -6.112525265721e-01, 1.797693134862e+308, 3.8708e-01, 1.2799e-02, + 2DIAGNOSTIC, 7, -6.122331464852e-01, 1.797693134862e+308, 4.0341e-01, 1.6326e-02, + 2DIAGNOSTIC, 8, -6.125440836119e-01, 1.797693134862e+308, 4.2424e-01, 2.0829e-02, + 2DIAGNOSTIC, 9, -6.125678669851e-01, 1.797693134862e+308, 4.3867e-01, 1.4432e-02, + 2DIAGNOSTIC, 10, -6.125858237793e-01, 3.684941764037e-04, 4.5319e-01, 1.4517e-02, + 2DIAGNOSTIC, 11, -6.125987902504e-01, 3.065292133722e-04, 4.6623e-01, 1.3042e-02, + 2DIAGNOSTIC, 12, -6.126278123846e-01, 2.376690549576e-04, 4.8125e-01, 1.5019e-02, + 2DIAGNOSTIC, 13, -6.126269315048e-01, 1.687899556776e-04, 4.9689e-01, 1.5638e-02, + 2DIAGNOSTIC, 14, -6.126252009396e-01, 1.085273968072e-04, 5.0990e-01, 1.3016e-02, + 2DIAGNOSTIC, 15, -6.126401367748e-01, 5.844834449376e-05, 5.2284e-01, 1.2941e-02, + 2DIAGNOSTIC, 16, -6.126732673074e-01, 1.907213879850e-05, 5.3504e-01, 1.2194e-02, + 2DIAGNOSTIC, 17, -6.127538233503e-01, 1.149581095574e-05, 5.4714e-01, 1.2100e-02, + 2DIAGNOSTIC, 18, -6.128682560608e-01, 1.479858193938e-05, 5.5934e-01, 1.2199e-02, + 2DIAGNOSTIC, 19, -6.130449139456e-01, 2.140432090027e-05, 5.7235e-01, 1.3017e-02, + 2DIAGNOSTIC, 20, -6.134788890828e-01, 3.594332620990e-05, 5.8949e-01, 1.7133e-02, + 2DIAGNOSTIC, 21, -6.135122226522e-01, 4.669282953126e-05, 6.0362e-01, 1.4133e-02, + 2DIAGNOSTIC, 22, -6.135304246196e-01, 5.335772990715e-05, 6.1782e-01, 1.4205e-02, + 2DIAGNOSTIC, 23, -6.135513136692e-01, 5.508674699339e-05, 6.3221e-01, 1.4381e-02, + 2DIAGNOSTIC, 24, -6.135749837267e-01, 5.199266117203e-05, 6.4517e-01, 1.2960e-02, + 2DIAGNOSTIC, 25, -6.136191222841e-01, 4.536822506906e-05, 6.5934e-01, 1.4173e-02, + 2DIAGNOSTIC, 26, -6.136887258052e-01, 3.692434912016e-05, 6.7658e-01, 1.7240e-02, + 2DIAGNOSTIC, 27, -6.137218382393e-01, 2.777328377258e-05, 6.9088e-01, 1.4306e-02, + 2DIAGNOSTIC, 28, -6.137308814023e-01, 1.882888656921e-05, 7.0377e-01, 1.2889e-02, + 2DIAGNOSTIC, 29, -6.137501881530e-01, 1.178952953979e-05, 7.1798e-01, 1.4204e-02, + 2DIAGNOSTIC, 30, -6.137625441380e-01, 1.109090580158e-05, 7.3026e-01, 1.2284e-02, + 2DIAGNOSTIC, 31, -6.138232027661e-01, 1.087502792544e-05, 7.4270e-01, 1.2440e-02, + 2DIAGNOSTIC, 32, -6.138965123519e-01, 1.104131160617e-05, 7.5662e-01, 1.3921e-02, + 2DIAGNOSTIC, 33, -6.140090005575e-01, 1.211212028355e-05, 7.7235e-01, 1.5723e-02, + 2DIAGNOSTIC, 34, -6.139963114372e-01, 1.218914891420e-05, 7.8788e-01, 1.5535e-02, + 2DIAGNOSTIC, 35, -6.139919520444e-01, 1.173248925800e-05, 8.0214e-01, 1.4264e-02, + 2DIAGNOSTIC, 36, -6.140175507657e-01, 1.149781164700e-05, 8.1450e-01, 1.2360e-02, + 2DIAGNOSTIC, 37, -6.140117088579e-01, 1.057381912380e-05, 8.3130e-01, 1.6792e-02, + 2DIAGNOSTIC, 38, -6.140193476660e-01, 8.963290530545e-06, 8.4578e-01, 1.4483e-02, + 2DIAGNOSTIC, 39, -6.140165978916e-01, 6.876020834011e-06, 8.8600e-01, 4.0216e-02, + 2DIAGNOSTIC, 40, -6.140165979129e-01, 4.471245194860e-06, 9.2549e-01, 3.9493e-02, + 2DIAGNOSTIC, 41, -6.140165979129e-01, 2.505154055886e-06, 9.3959e-01, 1.4098e-02, + 2DIAGNOSTIC, 42, -6.140165979129e-01, 1.238293610092e-06, 9.5481e-01, 1.5223e-02, + 2DIAGNOSTIC, 43, -6.140165979129e-01, 1.204356661254e-06, 9.6834e-01, 1.3531e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.163679452338e-01, 1.797693134862e+308, 1.1439e+00, 1.7557e-01, + Elapsed time (stage 1): 1.1647e+00 + + +Total elapsed time: 2.2772e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:46:17 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 35 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 91 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 89.68% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 89.68% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[ 9719 2977 17533 959 839 183 0 215 1522 876 390 0 + 0 0 0 0 217 256 321 0 252 0 0 269 + 0 0 0 0 0 0 0 0 0 0 0] +[95525 29079 18769 12773 15401 9688 3185 4898 4483 5653 2220 2928 + 5379 2039 1529 1484 2102 1257 1254 1937 881 612 974 805 + 544 261 0 0 0 0 0 0 0 0 237] +[ 0 5439 1215 0 6277 1045 1576 0 0 414 0 0 + 0 5555 376 0 11201 0 0 0 8565 211 0 4462 + 177 9516 0 0 0 0 0 0 0 0 0] +[ 337 8712 23387 1117 911 0 911 226 4718 9342 1637 468 + 0 263 9033 188 1197 4627 1552 660 253 1899 3714 2407 + 9324 96208 903 720 993 688 0 734 573 4497 656] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:55:19 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:55:24 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:09 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:09 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:09 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:20 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:23 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC006 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:00:25 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:00:52 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:04:07 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:04:08 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:05:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:05:27 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x56275c26fd20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [85.4449, 113.949, -133.203] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56275c0e6730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9132efe010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x56275c273020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 52.7385, -119.927] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56275c2790c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f912f83f010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x56275c289840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [175, 243, 259] + Spacing: [1, 1, 1] + Origin: [85.4449, 113.949, -133.203] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56275c275890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f912a437010 + Container manages memory: true + Size: 11013975 + Capacity: 11013975 + + Moving image = Image (0x56275c28d3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 52.7385, -119.927] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56275c27c130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9126d78010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.173230745228e-01, 1.797693134862e+308, 2.3602e-01, 2.3602e-01, + 2DIAGNOSTIC, 2, -4.182420532872e-01, 1.797693134862e+308, 2.3740e-01, 1.3819e-03, + 2DIAGNOSTIC, 3, -4.192168358540e-01, 1.797693134862e+308, 2.3876e-01, 1.3580e-03, + 2DIAGNOSTIC, 4, -4.262646322388e-01, 1.797693134862e+308, 2.4009e-01, 1.3301e-03, + 2DIAGNOSTIC, 5, -4.540263028235e-01, 1.797693134862e+308, 2.4148e-01, 1.3900e-03, + 2DIAGNOSTIC, 6, -4.622964986765e-01, 1.797693134862e+308, 2.4290e-01, 1.4141e-03, + 2DIAGNOSTIC, 7, -4.819142318332e-01, 1.797693134862e+308, 2.4474e-01, 1.8449e-03, + 2DIAGNOSTIC, 8, -5.391819289365e-01, 1.797693134862e+308, 2.4643e-01, 1.6901e-03, + 2DIAGNOSTIC, 9, -5.763820076154e-01, 1.797693134862e+308, 2.4866e-01, 2.2330e-03, + 2DIAGNOSTIC, 10, -5.878796195878e-01, 2.497826809068e-02, 2.5531e-01, 6.6450e-03, + 2DIAGNOSTIC, 11, -5.878789594970e-01, 2.463065887161e-02, 2.5700e-01, 1.6899e-03, + 2DIAGNOSTIC, 12, -5.878798391261e-01, 2.225655247950e-02, 2.5866e-01, 1.6608e-03, + 2DIAGNOSTIC, 13, -5.878813256716e-01, 1.833851041058e-02, 2.6023e-01, 1.5662e-03, + 2DIAGNOSTIC, 14, -5.878838347355e-01, 1.365102959029e-02, 2.6184e-01, 1.6160e-03, + 2DIAGNOSTIC, 15, -5.878880642266e-01, 9.487852529323e-03, 2.6349e-01, 1.6499e-03, + 2DIAGNOSTIC, 16, -5.878951783561e-01, 5.358269504945e-03, 2.6521e-01, 1.7161e-03, + 2DIAGNOSTIC, 17, -5.879070956468e-01, 1.879935637252e-03, 2.6684e-01, 1.6310e-03, + 2DIAGNOSTIC, 18, -5.879269237523e-01, 3.490618270217e-04, 2.6852e-01, 1.6849e-03, + 2DIAGNOSTIC, 19, -5.879595719421e-01, 6.036232603729e-06, 2.7019e-01, 1.6670e-03, + 2DIAGNOSTIC, 20, -5.880128365385e-01, 8.353655768123e-06, 2.7205e-01, 1.8561e-03, + 2DIAGNOSTIC, 21, -5.880972638969e-01, 1.190900918592e-05, 2.7380e-01, 1.7540e-03, + 2DIAGNOSTIC, 22, -5.882227923148e-01, 1.715749073870e-05, 2.7553e-01, 1.7269e-03, + 2DIAGNOSTIC, 23, -5.883931011633e-01, 2.433794349806e-05, 2.7712e-01, 1.5912e-03, + 2DIAGNOSTIC, 24, -5.886004135145e-01, 3.326012965532e-05, 2.7882e-01, 1.6959e-03, + 2DIAGNOSTIC, 25, -5.888120229344e-01, 4.287995408267e-05, 2.8048e-01, 1.6692e-03, + 2DIAGNOSTIC, 26, -5.890121737415e-01, 5.191091865678e-05, 2.8216e-01, 1.6758e-03, + 2DIAGNOSTIC, 27, -5.896062191106e-01, 6.707641699219e-05, 2.8381e-01, 1.6532e-03, + 2DIAGNOSTIC, 28, -5.903590672032e-01, 8.890713540032e-05, 2.8551e-01, 1.6930e-03, + 2DIAGNOSTIC, 29, -5.913471437619e-01, 1.187697995311e-04, 2.8744e-01, 1.9369e-03, + 2DIAGNOSTIC, 30, -5.917439790790e-01, 1.429120427179e-04, 2.8908e-01, 1.6329e-03, + 2DIAGNOSTIC, 31, -5.919339382133e-01, 1.566812873045e-04, 2.9072e-01, 1.6401e-03, + 2DIAGNOSTIC, 32, -5.931086334345e-01, 1.756859999349e-04, 2.9263e-01, 1.9090e-03, + 2DIAGNOSTIC, 33, -5.963656810921e-01, 2.293434473632e-04, 2.9511e-01, 2.4841e-03, + 2DIAGNOSTIC, 34, -5.970355693882e-01, 2.697853885751e-04, 2.9676e-01, 1.6499e-03, + 2DIAGNOSTIC, 35, -5.971302475858e-01, 2.873309005810e-04, 2.9843e-01, 1.6670e-03, + 2DIAGNOSTIC, 36, -5.969158902628e-01, 2.772701206399e-04, 3.0062e-01, 2.1951e-03, + 2DIAGNOSTIC, 37, -5.952810080594e-01, 2.270398047143e-04, 3.0671e-01, 6.0849e-03, + 2DIAGNOSTIC, 38, -5.952809895694e-01, 1.676618882542e-04, 3.0837e-01, 1.6589e-03, + 2DIAGNOSTIC, 39, -5.952810428021e-01, 1.079751775886e-04, 3.1001e-01, 1.6460e-03, + 2DIAGNOSTIC, 40, -5.952811327880e-01, 4.665961661319e-05, 3.1166e-01, 1.6520e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.489156755987e-01, 1.797693134862e+308, 5.6268e-01, 2.5102e-01, + 2DIAGNOSTIC, 2, -4.498438688171e-01, 1.797693134862e+308, 5.6511e-01, 2.4240e-03, + 2DIAGNOSTIC, 3, -4.511071747703e-01, 1.797693134862e+308, 5.6746e-01, 2.3499e-03, + 2DIAGNOSTIC, 4, -4.522890359930e-01, 1.797693134862e+308, 5.6987e-01, 2.4159e-03, + 2DIAGNOSTIC, 5, -4.540898285752e-01, 1.797693134862e+308, 5.7216e-01, 2.2831e-03, + 2DIAGNOSTIC, 6, -4.559440615716e-01, 1.797693134862e+308, 5.7431e-01, 2.1541e-03, + 2DIAGNOSTIC, 7, -4.570632250372e-01, 1.797693134862e+308, 5.7743e-01, 3.1240e-03, + 2DIAGNOSTIC, 8, -4.573464942066e-01, 1.797693134862e+308, 5.7957e-01, 2.1322e-03, + 2DIAGNOSTIC, 9, -4.577462225056e-01, 1.797693134862e+308, 5.8230e-01, 2.7289e-03, + 2DIAGNOSTIC, 10, -4.582567385434e-01, 1.452226540471e-03, 5.8465e-01, 2.3580e-03, + 2DIAGNOSTIC, 11, -4.586786706437e-01, 1.174542142263e-03, 5.8730e-01, 2.6500e-03, + 2DIAGNOSTIC, 12, -4.589175314824e-01, 8.982619135976e-04, 5.9050e-01, 3.1991e-03, + 2DIAGNOSTIC, 13, -4.589273848271e-01, 6.458216107441e-04, 5.9411e-01, 3.6030e-03, + 2DIAGNOSTIC, 14, -4.590590585748e-01, 4.293273303968e-04, 5.9732e-01, 3.2110e-03, + 2DIAGNOSTIC, 15, -4.590940106632e-01, 2.773109409022e-04, 6.0083e-01, 3.5090e-03, + 2DIAGNOSTIC, 16, -4.591157343803e-01, 1.910528418408e-04, 6.0399e-01, 3.1672e-03, + 2DIAGNOSTIC, 17, -4.614443169665e-01, 2.239344271654e-04, 6.0740e-01, 3.4070e-03, + 2DIAGNOSTIC, 18, -4.660958775880e-01, 4.007556027859e-04, 6.1081e-01, 3.4130e-03, + 2DIAGNOSTIC, 19, -4.667401878048e-01, 5.520960882554e-04, 6.1380e-01, 2.9831e-03, + 2DIAGNOSTIC, 20, -4.667598632679e-01, 6.553972654936e-04, 6.1614e-01, 2.3410e-03, + 2DIAGNOSTIC, 21, -4.674654094114e-01, 7.231140792526e-04, 6.1870e-01, 2.5649e-03, + 2DIAGNOSTIC, 22, -4.676580631700e-01, 7.275693204373e-04, 6.2124e-01, 2.5399e-03, + 2DIAGNOSTIC, 23, -4.676024626966e-01, 6.601203659673e-04, 6.2411e-01, 2.8691e-03, + 2DIAGNOSTIC, 24, -4.675745503159e-01, 5.399910766556e-04, 6.2667e-01, 2.5620e-03, + 2DIAGNOSTIC, 25, -4.675377589517e-01, 3.815474185483e-04, 6.2890e-01, 2.2299e-03, + 2DIAGNOSTIC, 26, -4.675161764219e-01, 1.994407291090e-04, 6.3116e-01, 2.2531e-03, + 2DIAGNOSTIC, 27, -4.675165802435e-01, 6.262366320430e-05, 6.3370e-01, 2.5430e-03, + 2DIAGNOSTIC, 28, -4.673993960043e-01, 2.969175021512e-05, 6.3629e-01, 2.5880e-03, + 2DIAGNOSTIC, 29, -4.673752156869e-01, 9.873498544921e-06, 6.3856e-01, 2.2690e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.752228728645e-01, 1.797693134862e+308, 9.3523e-01, 2.9668e-01, + 2DIAGNOSTIC, 2, -3.758581634308e-01, 1.797693134862e+308, 9.4856e-01, 1.3322e-02, + 2DIAGNOSTIC, 3, -3.765805474921e-01, 1.797693134862e+308, 9.6375e-01, 1.5191e-02, + 2DIAGNOSTIC, 4, -3.769489596695e-01, 1.797693134862e+308, 9.7778e-01, 1.4034e-02, + 2DIAGNOSTIC, 5, -3.772810192538e-01, 1.797693134862e+308, 9.9073e-01, 1.2949e-02, + 2DIAGNOSTIC, 6, -3.789111853174e-01, 1.797693134862e+308, 1.0040e+00, 1.3278e-02, + 2DIAGNOSTIC, 7, -3.805978709339e-01, 1.797693134862e+308, 1.0179e+00, 1.3858e-02, + 2DIAGNOSTIC, 8, -3.824067500551e-01, 1.797693134862e+308, 1.0334e+00, 1.5498e-02, + 2DIAGNOSTIC, 9, -3.842328723731e-01, 1.797693134862e+308, 1.0477e+00, 1.4375e-02, + 2DIAGNOSTIC, 10, -3.881841026767e-01, 1.975214165802e-03, 1.0636e+00, 1.5827e-02, + 2DIAGNOSTIC, 11, -3.906635953112e-01, 2.224481860415e-03, 1.0791e+00, 1.5543e-02, + 2DIAGNOSTIC, 12, -3.924329850864e-01, 2.377981522743e-03, 1.1027e+00, 2.3619e-02, + 2DIAGNOSTIC, 13, -3.930372206819e-01, 2.369938003644e-03, 1.1163e+00, 1.3618e-02, + 2DIAGNOSTIC, 14, -3.937652918064e-01, 2.207814026978e-03, 1.1291e+00, 1.2801e-02, + 2DIAGNOSTIC, 15, -3.943665160252e-01, 1.909544555204e-03, 1.1421e+00, 1.2949e-02, + 2DIAGNOSTIC, 16, -3.954427923446e-01, 1.596864809955e-03, 1.1550e+00, 1.2859e-02, + 2DIAGNOSTIC, 17, -3.969297361068e-01, 1.311923454956e-03, 1.1682e+00, 1.3209e-02, + 2DIAGNOSTIC, 18, -4.034658319211e-01, 1.278614186029e-03, 1.1811e+00, 1.2927e-02, + 2DIAGNOSTIC, 19, -4.072806758356e-01, 1.339443186379e-03, 1.1980e+00, 1.6879e-02, + 2DIAGNOSTIC, 20, -4.136654907636e-01, 1.644268984301e-03, 1.2137e+00, 1.5707e-02, + 2DIAGNOSTIC, 21, -4.167219603870e-01, 1.954059232896e-03, 1.2270e+00, 1.3276e-02, + 2DIAGNOSTIC, 22, -4.209748333718e-01, 2.249756625281e-03, 1.2425e+00, 1.5511e-02, + 2DIAGNOSTIC, 23, -4.274418240642e-01, 2.525468431687e-03, 1.2645e+00, 2.2049e-02, + 2DIAGNOSTIC, 24, -4.312469334309e-01, 2.670213967203e-03, 1.2833e+00, 1.8761e-02, + 2DIAGNOSTIC, 25, -4.348008585946e-01, 2.670895930501e-03, 1.2975e+00, 1.4223e-02, + 2DIAGNOSTIC, 26, -4.427809054482e-01, 2.669707196696e-03, 1.3117e+00, 1.4225e-02, + 2DIAGNOSTIC, 27, -4.551840870093e-01, 2.773782556318e-03, 1.3253e+00, 1.3540e-02, + 2DIAGNOSTIC, 28, -4.600120544636e-01, 2.886627347263e-03, 1.3389e+00, 1.3686e-02, + 2DIAGNOSTIC, 29, -4.764953668999e-01, 3.205989196594e-03, 1.3578e+00, 1.8805e-02, + 2DIAGNOSTIC, 30, -4.794894022268e-01, 3.410771122271e-03, 1.3730e+00, 1.5281e-02, + 2DIAGNOSTIC, 31, -4.811950486310e-01, 3.385609721511e-03, 1.3886e+00, 1.5577e-02, + 2DIAGNOSTIC, 32, -4.859411846221e-01, 3.234342206588e-03, 1.4057e+00, 1.7132e-02, + 2DIAGNOSTIC, 33, -4.970576712405e-01, 3.147663244178e-03, 1.4194e+00, 1.3634e-02, + 2DIAGNOSTIC, 34, -5.252020746289e-01, 3.396615149731e-03, 1.4326e+00, 1.3229e-02, + 2DIAGNOSTIC, 35, -5.441854164043e-01, 3.723606902192e-03, 1.4475e+00, 1.4899e-02, + 2DIAGNOSTIC, 36, -5.507816269054e-01, 3.943201385787e-03, 1.4623e+00, 1.4815e-02, + 2DIAGNOSTIC, 37, -5.559321707316e-01, 4.097207763654e-03, 1.4786e+00, 1.6248e-02, + 2DIAGNOSTIC, 38, -5.602175675333e-01, 4.002110425471e-03, 1.4960e+00, 1.7400e-02, + 2DIAGNOSTIC, 39, -5.697541814385e-01, 3.959193520613e-03, 1.5113e+00, 1.5312e-02, + 2DIAGNOSTIC, 40, -5.787956662164e-01, 3.730850548027e-03, 1.5247e+00, 1.3384e-02, + 2DIAGNOSTIC, 41, -5.869529582548e-01, 3.319651359502e-03, 1.5398e+00, 1.5174e-02, + 2DIAGNOSTIC, 42, -5.888409448434e-01, 2.723601393075e-03, 1.5549e+00, 1.5081e-02, + 2DIAGNOSTIC, 43, -5.892100667708e-01, 2.068454864726e-03, 1.5680e+00, 1.3126e-02, + 2DIAGNOSTIC, 44, -5.893632124353e-01, 1.653039396926e-03, 1.5848e+00, 1.6761e-02, + 2DIAGNOSTIC, 45, -5.893917974222e-01, 1.364516735189e-03, 1.6015e+00, 1.6675e-02, + 2DIAGNOSTIC, 46, -5.893614201693e-01, 1.049364901625e-03, 1.6182e+00, 1.6704e-02, + 2DIAGNOSTIC, 47, -5.893556797751e-01, 7.200072599517e-04, 1.6332e+00, 1.5046e-02, + 2DIAGNOSTIC, 48, -5.893455641409e-01, 3.935427733558e-04, 1.6460e+00, 1.2785e-02, + 2DIAGNOSTIC, 49, -5.893975113052e-01, 1.639530061227e-04, 1.6590e+00, 1.2974e-02, + 2DIAGNOSTIC, 50, -5.895530239972e-01, 3.923337843943e-05, 1.6732e+00, 1.4215e-02, + 2DIAGNOSTIC, 51, -5.896702642549e-01, 1.413752653631e-05, 1.6884e+00, 1.5183e-02, + 2DIAGNOSTIC, 52, -5.902191155663e-01, 1.697284637732e-05, 1.7015e+00, 1.3141e-02, + 2DIAGNOSTIC, 53, -5.929324507952e-01, 5.265632458689e-05, 1.7186e+00, 1.7074e-02, + 2DIAGNOSTIC, 54, -5.937477726620e-01, 9.160420385541e-05, 1.7344e+00, 1.5807e-02, + 2DIAGNOSTIC, 55, -5.952170147183e-01, 1.363840931228e-04, 1.7481e+00, 1.3699e-02, + 2DIAGNOSTIC, 56, -5.959913297580e-01, 1.741200268046e-04, 1.7622e+00, 1.4053e-02, + 2DIAGNOSTIC, 57, -5.964583577204e-01, 1.982954563785e-04, 1.7799e+00, 1.7693e-02, + 2DIAGNOSTIC, 58, -5.966862976481e-01, 2.044317861994e-04, 1.7936e+00, 1.3724e-02, + 2DIAGNOSTIC, 59, -5.971248552726e-01, 1.955146491891e-04, 1.8093e+00, 1.5718e-02, + 2DIAGNOSTIC, 60, -5.974163567652e-01, 1.727459518565e-04, 1.8295e+00, 2.0245e-02, + 2DIAGNOSTIC, 61, -5.976449362512e-01, 1.377599075204e-04, 1.8428e+00, 1.3225e-02, + 2DIAGNOSTIC, 62, -5.977974805056e-01, 9.702380620359e-05, 1.8554e+00, 1.2646e-02, + 2DIAGNOSTIC, 63, -5.981184635662e-01, 7.626445936258e-05, 1.8717e+00, 1.6249e-02, + 2DIAGNOSTIC, 64, -5.982741401440e-01, 5.736210174341e-05, 1.8846e+00, 1.2970e-02, + 2DIAGNOSTIC, 65, -5.984173241937e-01, 4.769151948888e-05, 1.8994e+00, 1.4786e-02, + 2DIAGNOSTIC, 66, -5.989407331691e-01, 4.497291132517e-05, 1.9179e+00, 1.8491e-02, + 2DIAGNOSTIC, 67, -5.992643041553e-01, 4.467355569639e-05, 1.9327e+00, 1.4752e-02, + 2DIAGNOSTIC, 68, -5.994659688661e-01, 4.361218962258e-05, 1.9480e+00, 1.5349e-02, + 2DIAGNOSTIC, 69, -5.994365847110e-01, 4.178400011604e-05, 1.9625e+00, 1.4506e-02, + 2DIAGNOSTIC, 70, -5.994303316429e-01, 3.837585919869e-05, 1.9773e+00, 1.4789e-02, + 2DIAGNOSTIC, 71, -5.994496827732e-01, 3.335653307368e-05, 1.9943e+00, 1.7023e-02, + 2DIAGNOSTIC, 72, -5.994842496923e-01, 2.668554235059e-05, 2.0093e+00, 1.5005e-02, + 2DIAGNOSTIC, 73, -5.994258751993e-01, 1.972167094284e-05, 2.0263e+00, 1.6957e-02, + 2DIAGNOSTIC, 74, -5.994152794845e-01, 1.229316958041e-05, 2.0411e+00, 1.4804e-02, + 2DIAGNOSTIC, 75, -5.994036775796e-01, 4.879999023790e-06, 2.0541e+00, 1.2988e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.080311336104e-01, 1.797693134862e+308, 2.5181e+00, 4.6398e-01, + 2DIAGNOSTIC, 2, -5.081909509682e-01, 1.797693134862e+308, 2.6089e+00, 9.0878e-02, + 2DIAGNOSTIC, 3, -5.082316546213e-01, 1.797693134862e+308, 2.7157e+00, 1.0675e-01, + 2DIAGNOSTIC, 4, -5.082786280395e-01, 1.797693134862e+308, 2.8248e+00, 1.0913e-01, + 2DIAGNOSTIC, 5, -5.082906395127e-01, 1.797693134862e+308, 2.9342e+00, 1.0936e-01, + 2DIAGNOSTIC, 6, -5.083047431460e-01, 1.797693134862e+308, 3.0265e+00, 9.2357e-02, + 2DIAGNOSTIC, 7, -5.083906256921e-01, 1.797693134862e+308, 3.1166e+00, 9.0056e-02, + 2DIAGNOSTIC, 8, -5.085809839035e-01, 1.797693134862e+308, 3.2540e+00, 1.3743e-01, + 2DIAGNOSTIC, 9, -5.088850521441e-01, 1.797693134862e+308, 3.3803e+00, 1.2631e-01, + 2DIAGNOSTIC, 10, -5.089088709572e-01, 1.029086348789e-04, 3.4918e+00, 1.1149e-01, + 2DIAGNOSTIC, 11, -5.089062913738e-01, 9.855178922012e-05, 3.6026e+00, 1.1079e-01, + 2DIAGNOSTIC, 12, -5.089131056541e-01, 9.423182302987e-05, 3.7133e+00, 1.1070e-01, + 2DIAGNOSTIC, 13, -5.089119480952e-01, 8.377293873016e-05, 3.8566e+00, 1.4327e-01, + 2DIAGNOSTIC, 14, -5.089100630328e-01, 6.903800385409e-05, 3.9858e+00, 1.2918e-01, + 2DIAGNOSTIC, 15, -5.089083372327e-01, 5.064493385744e-05, 4.0973e+00, 1.1157e-01, + 2DIAGNOSTIC, 16, -5.089076810305e-01, 3.073774367988e-05, 4.2069e+00, 1.0957e-01, + 2DIAGNOSTIC, 17, -5.089056043580e-01, 1.323156007440e-05, 4.2960e+00, 8.9054e-02, + 2DIAGNOSTIC, 18, -5.089066258963e-01, 2.300862162269e-06, 4.4034e+00, 1.0740e-01, + 2DIAGNOSTIC, 19, -5.089067330987e-01, 1.398909467799e-06, 4.4977e+00, 9.4351e-02, + 2DIAGNOSTIC, 20, -5.089097883496e-01, 1.367867872616e-06, 4.6071e+00, 1.0938e-01, + 2DIAGNOSTIC, 21, -5.089082193093e-01, 1.242656873457e-06, 4.7162e+00, 1.0907e-01, + 2DIAGNOSTIC, 22, -5.089081983911e-01, 1.329355360097e-06, 4.8260e+00, 1.0982e-01, + 2DIAGNOSTIC, 23, -5.089078136514e-01, 1.383086201470e-06, 4.9492e+00, 1.2319e-01, + 2DIAGNOSTIC, 24, -5.089069066526e-01, 1.366827719750e-06, 5.0541e+00, 1.0491e-01, + 2DIAGNOSTIC, 25, -5.089059936780e-01, 1.288736459278e-06, 5.1632e+00, 1.0914e-01, + 2DIAGNOSTIC, 26, -5.089050253318e-01, 1.182354362105e-06, 5.2585e+00, 9.5260e-02, + 2DIAGNOSTIC, 27, -5.089029740430e-01, 1.003008233302e-06, 5.3676e+00, 1.0907e-01, + Elapsed time (stage 0): 5.5121e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.233706174549e-01, 1.797693134862e+308, 2.1110e-01, 2.1110e-01, + 2DIAGNOSTIC, 2, -8.257190956398e-01, 1.797693134862e+308, 2.1236e-01, 1.2619e-03, + 2DIAGNOSTIC, 3, -8.288587557512e-01, 1.797693134862e+308, 2.1362e-01, 1.2531e-03, + 2DIAGNOSTIC, 4, -8.340107205814e-01, 1.797693134862e+308, 2.1491e-01, 1.2889e-03, + 2DIAGNOSTIC, 5, -8.404771390492e-01, 1.797693134862e+308, 2.1620e-01, 1.2939e-03, + 2DIAGNOSTIC, 6, -8.752850125561e-01, 1.797693134862e+308, 2.1789e-01, 1.6921e-03, + 2DIAGNOSTIC, 7, -8.963213383532e-01, 1.797693134862e+308, 2.2082e-01, 2.9299e-03, + 2DIAGNOSTIC, 8, -8.988502488414e-01, 1.797693134862e+308, 2.2212e-01, 1.2941e-03, + 2DIAGNOSTIC, 9, -9.039128479959e-01, 1.797693134862e+308, 2.2348e-01, 1.3640e-03, + 2DIAGNOSTIC, 10, -9.099085315409e-01, 7.862441798580e-03, 2.2533e-01, 1.8542e-03, + 2DIAGNOSTIC, 11, -9.172267051107e-01, 7.205437564499e-03, 2.2695e-01, 1.6119e-03, + 2DIAGNOSTIC, 12, -9.276565787475e-01, 6.348421680073e-03, 2.2869e-01, 1.7412e-03, + 2DIAGNOSTIC, 13, -9.409359599171e-01, 5.469260136622e-03, 2.3067e-01, 1.9839e-03, + 2DIAGNOSTIC, 14, -9.643781726803e-01, 4.885396308003e-03, 2.3245e-01, 1.7750e-03, + 2DIAGNOSTIC, 15, -9.704277652885e-01, 4.181913958971e-03, 2.3411e-01, 1.6670e-03, + 2DIAGNOSTIC, 16, -9.715674180938e-01, 3.898403093395e-03, 2.3587e-01, 1.7600e-03, + 2DIAGNOSTIC, 17, -9.723842349618e-01, 3.704454700587e-03, 2.3747e-01, 1.5979e-03, + 2DIAGNOSTIC, 18, -9.759419412770e-01, 3.294971264407e-03, 2.3903e-01, 1.5631e-03, + 2DIAGNOSTIC, 19, -9.760177125578e-01, 2.705058987273e-03, 2.4070e-01, 1.6658e-03, + 2DIAGNOSTIC, 20, -9.754740687053e-01, 2.012990927894e-03, 2.4254e-01, 1.8392e-03, + 2DIAGNOSTIC, 21, -9.765204329165e-01, 1.332241651269e-03, 2.4390e-01, 1.3571e-03, + 2DIAGNOSTIC, 22, -9.778398892180e-01, 7.579901174443e-04, 2.4550e-01, 1.6019e-03, + 2DIAGNOSTIC, 23, -9.809044940180e-01, 3.765875730843e-04, 2.4699e-01, 1.4939e-03, + 2DIAGNOSTIC, 24, -9.804513312217e-01, 2.862139666847e-04, 2.4920e-01, 2.2099e-03, + 2DIAGNOSTIC, 25, -9.815140679813e-01, 2.655962994407e-04, 2.5086e-01, 1.6541e-03, + 2DIAGNOSTIC, 26, -9.814721046643e-01, 2.349716919976e-04, 2.5237e-01, 1.5109e-03, + 2DIAGNOSTIC, 27, -9.829554958417e-01, 2.092255664147e-04, 2.5398e-01, 1.6150e-03, + 2DIAGNOSTIC, 28, -9.830936316639e-01, 2.053420520023e-04, 2.5549e-01, 1.5070e-03, + 2DIAGNOSTIC, 29, -9.827148114078e-01, 1.798958462313e-04, 2.5718e-01, 1.6968e-03, + 2DIAGNOSTIC, 30, -9.821684156828e-01, 1.288890590767e-04, 2.5850e-01, 1.3180e-03, + 2DIAGNOSTIC, 31, -9.817445638528e-01, 7.531967427441e-05, 2.6004e-01, 1.5380e-03, + 2DIAGNOSTIC, 32, -9.805798639241e-01, 1.873232506849e-05, 2.6159e-01, 1.5490e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.520799650880e-01, 1.797693134862e+308, 4.7908e-01, 2.1749e-01, + 2DIAGNOSTIC, 2, -8.535679760991e-01, 1.797693134862e+308, 4.8110e-01, 2.0120e-03, + 2DIAGNOSTIC, 3, -8.553152207496e-01, 1.797693134862e+308, 4.8303e-01, 1.9360e-03, + 2DIAGNOSTIC, 4, -8.576091505292e-01, 1.797693134862e+308, 4.8501e-01, 1.9779e-03, + 2DIAGNOSTIC, 5, -8.616489802589e-01, 1.797693134862e+308, 4.8708e-01, 2.0649e-03, + 2DIAGNOSTIC, 6, -8.657531013993e-01, 1.797693134862e+308, 4.8957e-01, 2.4939e-03, + 2DIAGNOSTIC, 7, -8.711950169547e-01, 1.797693134862e+308, 4.9237e-01, 2.7981e-03, + 2DIAGNOSTIC, 8, -8.727959201390e-01, 1.797693134862e+308, 4.9481e-01, 2.4400e-03, + 2DIAGNOSTIC, 9, -8.729726824890e-01, 1.797693134862e+308, 4.9693e-01, 2.1210e-03, + 2DIAGNOSTIC, 10, -8.730033078864e-01, 1.884638135877e-03, 4.9925e-01, 2.3198e-03, + 2DIAGNOSTIC, 11, -8.733964307634e-01, 1.562161355835e-03, 5.0167e-01, 2.4221e-03, + 2DIAGNOSTIC, 12, -8.741039920633e-01, 1.212137877258e-03, 5.0443e-01, 2.7552e-03, + 2DIAGNOSTIC, 13, -8.752868238425e-01, 8.808969614559e-04, 5.0689e-01, 2.4650e-03, + 2DIAGNOSTIC, 14, -8.809105418407e-01, 7.027077066349e-04, 5.0952e-01, 2.6329e-03, + 2DIAGNOSTIC, 15, -8.812116415971e-01, 5.759205761421e-04, 5.1313e-01, 3.6061e-03, + 2DIAGNOSTIC, 16, -8.819468895531e-01, 5.102209892465e-04, 5.1580e-01, 2.6660e-03, + 2DIAGNOSTIC, 17, -8.819210644884e-01, 5.099823780833e-04, 5.1821e-01, 2.4159e-03, + 2DIAGNOSTIC, 18, -8.821003133782e-01, 4.946574699309e-04, 5.2060e-01, 2.3870e-03, + 2DIAGNOSTIC, 19, -8.824302086763e-01, 4.426707117378e-04, 5.2321e-01, 2.6138e-03, + 2DIAGNOSTIC, 20, -8.827561110298e-01, 3.604743068783e-04, 5.2562e-01, 2.4040e-03, + 2DIAGNOSTIC, 21, -8.828087192793e-01, 2.607909198542e-04, 5.2899e-01, 3.3720e-03, + 2DIAGNOSTIC, 22, -8.832495819988e-01, 1.637253710681e-04, 5.3141e-01, 2.4261e-03, + 2DIAGNOSTIC, 23, -8.836567612318e-01, 8.031137849317e-05, 5.3413e-01, 2.7130e-03, + 2DIAGNOSTIC, 24, -8.838094650527e-01, 7.466299888657e-05, 5.3689e-01, 2.7609e-03, + 2DIAGNOSTIC, 25, -8.837595937267e-01, 6.562765195593e-05, 5.3936e-01, 2.4672e-03, + 2DIAGNOSTIC, 26, -8.836888444801e-01, 5.973394071925e-05, 5.4188e-01, 2.5220e-03, + 2DIAGNOSTIC, 27, -8.838994534222e-01, 5.098337517787e-05, 5.4463e-01, 2.7499e-03, + 2DIAGNOSTIC, 28, -8.839360354913e-01, 4.042400906226e-05, 5.4732e-01, 2.6951e-03, + 2DIAGNOSTIC, 29, -8.838255615239e-01, 2.929168257503e-05, 5.5061e-01, 3.2890e-03, + 2DIAGNOSTIC, 30, -8.839006082721e-01, 2.077725377450e-05, 5.5334e-01, 2.7251e-03, + 2DIAGNOSTIC, 31, -8.841310495160e-01, 1.383591296687e-05, 5.5575e-01, 2.4161e-03, + 2DIAGNOSTIC, 32, -8.844932498087e-01, 1.404157154582e-05, 5.5814e-01, 2.3851e-03, + 2DIAGNOSTIC, 33, -8.858356459598e-01, 3.005672381265e-05, 5.6088e-01, 2.7430e-03, + 2DIAGNOSTIC, 34, -8.862919700898e-01, 4.792898147368e-05, 5.6354e-01, 2.6581e-03, + 2DIAGNOSTIC, 35, -8.856313920296e-01, 5.384492242757e-05, 5.6717e-01, 3.6280e-03, + 2DIAGNOSTIC, 36, -8.856493556162e-01, 5.422204092661e-05, 5.6988e-01, 2.7082e-03, + 2DIAGNOSTIC, 37, -8.854936628450e-01, 4.986094420993e-05, 5.7221e-01, 2.3320e-03, + 2DIAGNOSTIC, 38, -8.855849706890e-01, 4.195167079625e-05, 5.7468e-01, 2.4700e-03, + 2DIAGNOSTIC, 39, -8.860061057020e-01, 3.304728834104e-05, 5.7721e-01, 2.5351e-03, + 2DIAGNOSTIC, 40, -8.861877896576e-01, 2.372247940351e-05, 5.8004e-01, 2.8250e-03, + 2DIAGNOSTIC, 41, -8.863796796865e-01, 1.614010683303e-05, 5.8359e-01, 3.5489e-03, + 2DIAGNOSTIC, 42, -8.859164575556e-01, 6.385357866848e-06, 5.8644e-01, 2.8579e-03, + 2DIAGNOSTIC, 43, -8.861347621074e-01, 8.255170794176e-06, 5.8922e-01, 2.7730e-03, + 2DIAGNOSTIC, 44, -8.859914769264e-01, 1.162104023483e-05, 5.9194e-01, 2.7189e-03, + 2DIAGNOSTIC, 45, -8.858349931652e-01, 7.872792058720e-06, 5.9432e-01, 2.3830e-03, + 2DIAGNOSTIC, 46, -8.858915831049e-01, 4.244094426301e-06, 5.9663e-01, 2.3131e-03, + 2DIAGNOSTIC, 47, -8.861519862700e-01, 1.191721562648e-06, 5.9899e-01, 2.3561e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.375881160308e-01, 1.797693134862e+308, 8.5302e-01, 2.5403e-01, + 2DIAGNOSTIC, 2, -7.384466831466e-01, 1.797693134862e+308, 8.6817e-01, 1.5149e-02, + 2DIAGNOSTIC, 3, -7.394575600395e-01, 1.797693134862e+308, 8.8282e-01, 1.4658e-02, + 2DIAGNOSTIC, 4, -7.412416574209e-01, 1.797693134862e+308, 8.9938e-01, 1.6560e-02, + 2DIAGNOSTIC, 5, -7.425826037455e-01, 1.797693134862e+308, 9.1371e-01, 1.4327e-02, + 2DIAGNOSTIC, 6, -7.439394617862e-01, 1.797693134862e+308, 9.2996e-01, 1.6249e-02, + 2DIAGNOSTIC, 7, -7.459203554550e-01, 1.797693134862e+308, 9.4675e-01, 1.6792e-02, + 2DIAGNOSTIC, 8, -7.471845136153e-01, 1.797693134862e+308, 9.6362e-01, 1.6864e-02, + 2DIAGNOSTIC, 9, -7.488836553252e-01, 1.797693134862e+308, 9.8188e-01, 1.8260e-02, + 2DIAGNOSTIC, 10, -7.494786729033e-01, 1.105733515221e-03, 9.9629e-01, 1.4410e-02, + 2DIAGNOSTIC, 11, -7.504801895204e-01, 9.969734290638e-04, 1.0104e+00, 1.4128e-02, + 2DIAGNOSTIC, 12, -7.512787907751e-01, 8.693230992657e-04, 1.0259e+00, 1.5527e-02, + 2DIAGNOSTIC, 13, -7.517294184696e-01, 7.246744116145e-04, 1.0396e+00, 1.3657e-02, + 2DIAGNOSTIC, 14, -7.524015983476e-01, 6.017918378124e-04, 1.0548e+00, 1.5196e-02, + 2DIAGNOSTIC, 15, -7.531323535482e-01, 4.929117202400e-04, 1.0716e+00, 1.6835e-02, + 2DIAGNOSTIC, 16, -7.535600734861e-01, 3.942340146880e-04, 1.0852e+00, 1.3562e-02, + 2DIAGNOSTIC, 17, -7.543202310936e-01, 3.321016729595e-04, 1.1002e+00, 1.5015e-02, + 2DIAGNOSTIC, 18, -7.547568533169e-01, 2.814507847332e-04, 1.1201e+00, 1.9848e-02, + 2DIAGNOSTIC, 19, -7.547657254213e-01, 2.443536581692e-04, 1.1360e+00, 1.5970e-02, + 2DIAGNOSTIC, 20, -7.547483660452e-01, 1.992240185142e-04, 1.1494e+00, 1.3400e-02, + 2DIAGNOSTIC, 21, -7.547556623121e-01, 1.580536404917e-04, 1.1628e+00, 1.3337e-02, + 2DIAGNOSTIC, 22, -7.547722364985e-01, 1.199487352184e-04, 1.1779e+00, 1.5137e-02, + 2DIAGNOSTIC, 23, -7.547865520909e-01, 8.153100962004e-05, 1.1932e+00, 1.5335e-02, + 2DIAGNOSTIC, 24, -7.548276583461e-01, 5.001736497665e-05, 1.2069e+00, 1.3685e-02, + 2DIAGNOSTIC, 25, -7.548387293422e-01, 2.777629854191e-05, 1.2209e+00, 1.3945e-02, + 2DIAGNOSTIC, 26, -7.549457933519e-01, 1.232798920843e-05, 1.2388e+00, 1.7928e-02, + 2DIAGNOSTIC, 27, -7.549737402979e-01, 7.832864238576e-06, 1.2548e+00, 1.5993e-02, + 2DIAGNOSTIC, 28, -7.548914601634e-01, 7.826869746291e-06, 1.2724e+00, 1.7634e-02, + 2DIAGNOSTIC, 29, -7.548765308587e-01, 7.169912020551e-06, 1.2903e+00, 1.7843e-02, + 2DIAGNOSTIC, 30, -7.548410448046e-01, 5.308515877531e-06, 1.3059e+00, 1.5620e-02, + 2DIAGNOSTIC, 31, -7.548421336636e-01, 3.243293787224e-06, 1.3240e+00, 1.8138e-02, + 2DIAGNOSTIC, 32, -7.548246768520e-01, 1.076078690980e-06, 1.3385e+00, 1.4434e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.223210909254e-01, 1.797693134862e+308, 1.8049e+00, 4.6644e-01, + 2DIAGNOSTIC, 2, -6.231353845446e-01, 1.797693134862e+308, 1.9135e+00, 1.0862e-01, + 2DIAGNOSTIC, 3, -6.241800396268e-01, 1.797693134862e+308, 2.0174e+00, 1.0393e-01, + 2DIAGNOSTIC, 4, -6.252199517931e-01, 1.797693134862e+308, 2.1231e+00, 1.0564e-01, + 2DIAGNOSTIC, 5, -6.260447021287e-01, 1.797693134862e+308, 2.2286e+00, 1.0552e-01, + 2DIAGNOSTIC, 6, -6.266492246856e-01, 1.797693134862e+308, 2.3497e+00, 1.2112e-01, + 2DIAGNOSTIC, 7, -6.268275387278e-01, 1.797693134862e+308, 2.5078e+00, 1.5803e-01, + 2DIAGNOSTIC, 8, -6.270610524342e-01, 1.797693134862e+308, 2.6127e+00, 1.0495e-01, + 2DIAGNOSTIC, 9, -6.271848527038e-01, 1.797693134862e+308, 2.7156e+00, 1.0292e-01, + 2DIAGNOSTIC, 10, -6.274080350599e-01, 5.255235724739e-04, 2.8139e+00, 9.8246e-02, + 2DIAGNOSTIC, 11, -6.277206203711e-01, 3.863982854337e-04, 2.9578e+00, 1.4393e-01, + 2DIAGNOSTIC, 12, -6.279206608734e-01, 2.739768379115e-04, 3.0502e+00, 9.2374e-02, + 2DIAGNOSTIC, 13, -6.280965903975e-01, 1.965552263839e-04, 3.1553e+00, 1.0508e-01, + 2DIAGNOSTIC, 14, -6.286695681867e-01, 1.643908825961e-04, 3.3297e+00, 1.7443e-01, + 2DIAGNOSTIC, 15, -6.287904783560e-01, 1.494923427309e-04, 3.4370e+00, 1.0732e-01, + 2DIAGNOSTIC, 16, -6.292002041301e-01, 1.516729242917e-04, 3.5736e+00, 1.3655e-01, + 2DIAGNOSTIC, 17, -6.292329974987e-01, 1.452446508004e-04, 3.7110e+00, 1.3745e-01, + 2DIAGNOSTIC, 18, -6.292246396899e-01, 1.320713924056e-04, 3.9072e+00, 1.9620e-01, + 2DIAGNOSTIC, 19, -6.292238448041e-01, 1.110841995357e-04, 4.0236e+00, 1.1641e-01, + 2DIAGNOSTIC, 20, -6.292230342249e-01, 8.687347844270e-05, 4.1479e+00, 1.2431e-01, + 2DIAGNOSTIC, 21, -6.292220995762e-01, 6.371632140004e-05, 4.2561e+00, 1.0812e-01, + 2DIAGNOSTIC, 22, -6.292217558256e-01, 4.101300695802e-05, 4.3805e+00, 1.2441e-01, + 2DIAGNOSTIC, 23, -6.292232132902e-01, 1.991874505169e-05, 4.5740e+00, 1.9350e-01, + 2DIAGNOSTIC, 24, -6.292233685948e-01, 9.703763699277e-06, 4.6793e+00, 1.0538e-01, + 2DIAGNOSTIC, 25, -6.292199915513e-01, 1.443212645245e-06, 4.7983e+00, 1.1898e-01, + Elapsed time (stage 1): 4.9460e+00 + + +Total elapsed time: 1.0462e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:05:41 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:05:41 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5568519ab4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 52.7385, -119.927] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5568519b0fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2fda841010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5568519ac850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 52.7385, -119.927] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5568519a9f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2fd7182010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5568519c3b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 52.7385, -119.927] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5568519b0550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2fd3ac3010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5568519c8d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 52.7385, -119.927] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5568519c6c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2fd0404010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x5568519caf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 52.7385, -119.927] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5568519c93a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2fccd45010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5568519cb540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 52.7385, -119.927] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5568519cb4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f2fc9686010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.909275224205e-01, 1.797693134862e+308, 2.1663e-01, 2.1663e-01, + 2DIAGNOSTIC, 2, -6.935368208863e-01, 1.797693134862e+308, 2.1868e-01, 2.0530e-03, + 2DIAGNOSTIC, 3, -6.968929257794e-01, 1.797693134862e+308, 2.2071e-01, 2.0318e-03, + 2DIAGNOSTIC, 4, -7.021388695523e-01, 1.797693134862e+308, 2.2272e-01, 2.0070e-03, + 2DIAGNOSTIC, 5, -7.070595849682e-01, 1.797693134862e+308, 2.2471e-01, 1.9879e-03, + 2DIAGNOSTIC, 6, -7.109592454735e-01, 1.797693134862e+308, 2.2672e-01, 2.0158e-03, + 2DIAGNOSTIC, 7, -7.125741344066e-01, 1.797693134862e+308, 2.2875e-01, 2.0311e-03, + 2DIAGNOSTIC, 8, -7.139258326340e-01, 1.797693134862e+308, 2.3077e-01, 2.0199e-03, + 2DIAGNOSTIC, 9, -7.145340010048e-01, 1.797693134862e+308, 2.3336e-01, 2.5890e-03, + 2DIAGNOSTIC, 10, -7.142391436103e-01, 2.384637242566e-03, 2.3589e-01, 2.5311e-03, + 2DIAGNOSTIC, 11, -7.139411666726e-01, 1.748721088374e-03, 2.3835e-01, 2.4581e-03, + 2DIAGNOSTIC, 12, -7.144076877481e-01, 1.166899771952e-03, 2.4099e-01, 2.6360e-03, + 2DIAGNOSTIC, 13, -7.147833900091e-01, 6.831858895008e-04, 2.4588e-01, 4.8969e-03, + 2DIAGNOSTIC, 14, -7.154047517825e-01, 3.729618964879e-04, 2.4873e-01, 2.8479e-03, + 2DIAGNOSTIC, 15, -7.156178353165e-01, 2.059921188224e-04, 2.5169e-01, 2.9559e-03, + 2DIAGNOSTIC, 16, -7.156720999868e-01, 1.402336309321e-04, 2.5417e-01, 2.4800e-03, + 2DIAGNOSTIC, 17, -7.155948756371e-01, 1.050069498455e-04, 2.5635e-01, 2.1861e-03, + 2DIAGNOSTIC, 18, -7.158184158810e-01, 9.857310334608e-05, 2.5846e-01, 2.1050e-03, + 2DIAGNOSTIC, 19, -7.159039223708e-01, 9.832580033749e-05, 2.6061e-01, 2.1470e-03, + 2DIAGNOSTIC, 20, -7.162715389569e-01, 9.084260813114e-05, 2.6271e-01, 2.1081e-03, + 2DIAGNOSTIC, 21, -7.165152466814e-01, 7.461886854813e-05, 2.6534e-01, 2.6231e-03, + 2DIAGNOSTIC, 22, -7.165461815010e-01, 6.208430901807e-05, 2.6785e-01, 2.5091e-03, + 2DIAGNOSTIC, 23, -7.168838176242e-01, 5.719231399365e-05, 2.7175e-01, 3.9060e-03, + 2DIAGNOSTIC, 24, -7.168907470805e-01, 5.767750175464e-05, 2.7557e-01, 3.8209e-03, + 2DIAGNOSTIC, 25, -7.169039672888e-01, 5.641855512871e-05, 2.7831e-01, 2.7390e-03, + 2DIAGNOSTIC, 26, -7.169260444298e-01, 5.133546602557e-05, 2.8087e-01, 2.5620e-03, + 2DIAGNOSTIC, 27, -7.176158251362e-01, 5.092908065302e-05, 2.8374e-01, 2.8701e-03, + 2DIAGNOSTIC, 28, -7.187597507648e-01, 6.506938670341e-05, 2.8703e-01, 3.2911e-03, + 2DIAGNOSTIC, 29, -7.189042287539e-01, 7.490495665240e-05, 2.8965e-01, 2.6109e-03, + 2DIAGNOSTIC, 30, -7.186023034105e-01, 7.823598699494e-05, 2.9222e-01, 2.5740e-03, + 2DIAGNOSTIC, 31, -7.184903040851e-01, 7.611836228983e-05, 2.9443e-01, 2.2061e-03, + 2DIAGNOSTIC, 32, -7.191457623502e-01, 7.527388044774e-05, 2.9698e-01, 2.5570e-03, + 2DIAGNOSTIC, 33, -7.190136490536e-01, 6.935077858942e-05, 3.0050e-01, 3.5131e-03, + 2DIAGNOSTIC, 34, -7.188891911427e-01, 5.609218048024e-05, 3.0328e-01, 2.7821e-03, + 2DIAGNOSTIC, 35, -7.189282795143e-01, 3.945282109221e-05, 3.0561e-01, 2.3348e-03, + 2DIAGNOSTIC, 36, -7.188182002367e-01, 1.902044986360e-05, 3.0807e-01, 2.4540e-03, + 2DIAGNOSTIC, 37, -7.188457614010e-01, 5.213335785625e-06, 3.1057e-01, 2.5041e-03, + 2DIAGNOSTIC, 38, -7.188933152864e-01, 4.089161462488e-06, 3.1307e-01, 2.5032e-03, + 2DIAGNOSTIC, 39, -7.189696585706e-01, 5.146568881623e-06, 3.1569e-01, 2.6109e-03, + 2DIAGNOSTIC, 40, -7.195471277794e-01, 8.558404601233e-06, 3.1887e-01, 3.1819e-03, + 2DIAGNOSTIC, 41, -7.194408597827e-01, 8.599134600128e-06, 3.2149e-01, 2.6231e-03, + 2DIAGNOSTIC, 42, -7.194920840208e-01, 1.471536785800e-05, 3.2404e-01, 2.5530e-03, + 2DIAGNOSTIC, 43, -7.201612139243e-01, 2.424919405656e-05, 3.3116e-01, 7.1139e-03, + 2DIAGNOSTIC, 44, -7.201612134389e-01, 2.974147435896e-05, 3.3321e-01, 2.0521e-03, + 2DIAGNOSTIC, 45, -7.201612247204e-01, 3.259006249066e-05, 3.3527e-01, 2.0599e-03, + 2DIAGNOSTIC, 46, -7.201612437933e-01, 3.141123699611e-05, 3.3733e-01, 2.0578e-03, + 2DIAGNOSTIC, 47, -7.201612760341e-01, 2.762685999200e-05, 3.3937e-01, 2.0399e-03, + 2DIAGNOSTIC, 48, -7.201613305205e-01, 2.174510885918e-05, 3.4140e-01, 2.0380e-03, + 2DIAGNOSTIC, 49, -7.201614225741e-01, 1.454705548586e-05, 3.4345e-01, 2.0471e-03, + 2DIAGNOSTIC, 50, -7.201615783252e-01, 1.101191467995e-05, 3.4549e-01, 2.0399e-03, + 2DIAGNOSTIC, 51, -7.201618397320e-01, 5.847637721264e-06, 3.4755e-01, 2.0599e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.214699796353e-01, 1.797693134862e+308, 5.8769e-01, 2.4014e-01, + 2DIAGNOSTIC, 2, -6.227804227865e-01, 1.797693134862e+308, 6.0140e-01, 1.3707e-02, + 2DIAGNOSTIC, 3, -6.240705889909e-01, 1.797693134862e+308, 6.1558e-01, 1.4180e-02, + 2DIAGNOSTIC, 4, -6.250255256197e-01, 1.797693134862e+308, 6.2929e-01, 1.3711e-02, + 2DIAGNOSTIC, 5, -6.255701609216e-01, 1.797693134862e+308, 6.4497e-01, 1.5686e-02, + 2DIAGNOSTIC, 6, -6.257875813841e-01, 1.797693134862e+308, 6.5865e-01, 1.3674e-02, + 2DIAGNOSTIC, 7, -6.258580330073e-01, 1.797693134862e+308, 6.7203e-01, 1.3387e-02, + 2DIAGNOSTIC, 8, -6.264376295611e-01, 1.797693134862e+308, 6.8948e-01, 1.7446e-02, + 2DIAGNOSTIC, 9, -6.265932488460e-01, 1.797693134862e+308, 7.0673e-01, 1.7249e-02, + 2DIAGNOSTIC, 10, -6.264364140712e-01, 4.753733499134e-04, 7.2063e-01, 1.3898e-02, + 2DIAGNOSTIC, 11, -6.269635098214e-01, 3.238939778551e-04, 7.3808e-01, 1.7456e-02, + 2DIAGNOSTIC, 12, -6.270454727864e-01, 2.203528202266e-04, 7.5270e-01, 1.4613e-02, + 2DIAGNOSTIC, 13, -6.271197122933e-01, 1.598941354126e-04, 7.7250e-01, 1.9804e-02, + 2DIAGNOSTIC, 14, -6.270809928926e-01, 1.232490382072e-04, 7.8659e-01, 1.4091e-02, + 2DIAGNOSTIC, 15, -6.271021897063e-01, 9.781957074845e-05, 8.0278e-01, 1.6190e-02, + 2DIAGNOSTIC, 16, -6.270679580003e-01, 7.197430817400e-05, 8.1874e-01, 1.5956e-02, + 2DIAGNOSTIC, 17, -6.270678924351e-01, 4.407042692812e-05, 8.3330e-01, 1.4566e-02, + 2DIAGNOSTIC, 18, -6.272191068218e-01, 3.382914406221e-05, 8.5335e-01, 2.0043e-02, + 2DIAGNOSTIC, 19, -6.271487072709e-01, 2.391578011538e-05, 8.6745e-01, 1.4107e-02, + 2DIAGNOSTIC, 20, -6.271438166866e-01, 9.050136507469e-06, 8.8348e-01, 1.6026e-02, + 2DIAGNOSTIC, 21, -6.271508271412e-01, 6.456889007501e-06, 8.9936e-01, 1.5884e-02, + 2DIAGNOSTIC, 22, -6.271413630021e-01, 5.049867162488e-06, 9.1325e-01, 1.3887e-02, + 2DIAGNOSTIC, 23, -6.271334693346e-01, 4.713962923598e-06, 9.2726e-01, 1.4013e-02, + 2DIAGNOSTIC, 24, -6.271082412885e-01, 2.881835739293e-06, 9.4280e-01, 1.5540e-02, + 2DIAGNOSTIC, 25, -6.271158425654e-01, 1.650241526659e-06, 9.5848e-01, 1.5681e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.166279238510e-01, 1.797693134862e+308, 1.3411e+00, 3.8266e-01, + 2DIAGNOSTIC, 2, -5.175290393106e-01, 1.797693134862e+308, 1.4397e+00, 9.8593e-02, + 2DIAGNOSTIC, 3, -5.188923824324e-01, 1.797693134862e+308, 1.5399e+00, 1.0018e-01, + 2DIAGNOSTIC, 4, -5.202360938528e-01, 1.797693134862e+308, 1.6394e+00, 9.9441e-02, + 2DIAGNOSTIC, 5, -5.210254171662e-01, 1.797693134862e+308, 1.7518e+00, 1.1247e-01, + 2DIAGNOSTIC, 6, -5.211535114148e-01, 1.797693134862e+308, 1.8494e+00, 9.7597e-02, + 2DIAGNOSTIC, 7, -5.212126242050e-01, 1.797693134862e+308, 2.0653e+00, 2.1583e-01, + 2DIAGNOSTIC, 8, -5.212045914597e-01, 1.797693134862e+308, 2.1750e+00, 1.0971e-01, + 2DIAGNOSTIC, 9, -5.212053101016e-01, 1.797693134862e+308, 2.2978e+00, 1.2280e-01, + 2DIAGNOSTIC, 10, -5.212046968919e-01, 5.436372622959e-04, 2.4089e+00, 1.1115e-01, + 2DIAGNOSTIC, 11, -5.212023348115e-01, 3.241497935086e-04, 2.5071e+00, 9.8183e-02, + 2DIAGNOSTIC, 12, -5.211988904478e-01, 1.528617396413e-04, 2.6096e+00, 1.0251e-01, + 2DIAGNOSTIC, 13, -5.212003639296e-01, 5.062603490137e-05, 2.7260e+00, 1.1644e-01, + 2DIAGNOSTIC, 14, -5.212003393476e-01, 1.027526522504e-05, 2.8402e+00, 1.1414e-01, + 2DIAGNOSTIC, 15, -5.211984629402e-01, 3.138365643002e-06, 2.9422e+00, 1.0201e-01, + 2DIAGNOSTIC, 16, -5.211967571020e-01, 1.059096456882e-06, 3.0538e+00, 1.1158e-01, + 2DIAGNOSTIC, 17, -5.211964679744e-01, 1.210058910128e-06, 3.1671e+00, 1.1337e-01, + 2DIAGNOSTIC, 18, -5.211960106027e-01, 1.144324064672e-06, 3.2797e+00, 1.1260e-01, + 2DIAGNOSTIC, 19, -5.211939730174e-01, 1.103148105391e-06, 3.3909e+00, 1.1115e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.538970039276e-01, 1.797693134862e+308, 4.7268e+00, 1.3359e+00, + 2DIAGNOSTIC, 2, -4.540154039567e-01, 1.797693134862e+308, 5.3911e+00, 6.6437e-01, + 2DIAGNOSTIC, 3, -4.540217236939e-01, 1.797693134862e+308, 6.9926e+00, 1.6015e+00, + 2DIAGNOSTIC, 4, -4.540218581260e-01, 1.797693134862e+308, 7.5902e+00, 5.9754e-01, + 2DIAGNOSTIC, 5, -4.540217740629e-01, 1.797693134862e+308, 8.1328e+00, 5.4258e-01, + 2DIAGNOSTIC, 6, -4.540215849480e-01, 1.797693134862e+308, 8.7883e+00, 6.5558e-01, + 2DIAGNOSTIC, 7, -4.540215738838e-01, 1.797693134862e+308, 9.4621e+00, 6.7373e-01, + 2DIAGNOSTIC, 8, -4.540214841602e-01, 1.797693134862e+308, 1.0100e+01, 6.3749e-01, + 2DIAGNOSTIC, 9, -4.540213646327e-01, 1.797693134862e+308, 1.0687e+01, 5.8769e-01, + 2DIAGNOSTIC, 10, -4.540209498717e-01, 1.124528227986e-05, 1.1315e+01, 6.2771e-01, + 2DIAGNOSTIC, 11, -4.540208672027e-01, 3.136801747516e-06, 1.1934e+01, 6.1938e-01, + 2DIAGNOSTIC, 12, -4.540207759253e-01, 2.519960427341e-06, 1.2493e+01, 5.5849e-01, + 2DIAGNOSTIC, 13, -4.540208519605e-01, 2.317287292067e-06, 1.3115e+01, 6.2253e-01, + 2DIAGNOSTIC, 14, -4.540207636964e-01, 2.157377567105e-06, 1.3676e+01, 5.6044e-01, + 2DIAGNOSTIC, 15, -4.540207217281e-01, 2.024575681145e-06, 1.4324e+01, 6.4832e-01, + 2DIAGNOSTIC, 16, -4.540206661918e-01, 1.907693920652e-06, 1.4957e+01, 6.3260e-01, + 2DIAGNOSTIC, 17, -4.540204978114e-01, 1.805200009211e-06, 1.5596e+01, 6.3948e-01, + 2DIAGNOSTIC, 18, -4.540203290282e-01, 1.711199509383e-06, 1.6139e+01, 5.4244e-01, + 2DIAGNOSTIC, 19, -4.540201869056e-01, 1.624084233556e-06, 1.6768e+01, 6.2963e-01, + 2DIAGNOSTIC, 20, -4.540201403257e-01, 1.535995858323e-06, 1.7423e+01, 6.5486e-01, + 2DIAGNOSTIC, 21, -4.540199000625e-01, 1.451770569282e-06, 1.8081e+01, 6.5766e-01, + 2DIAGNOSTIC, 22, -4.540199702082e-01, 1.380590219341e-06, 1.8716e+01, 6.3535e-01, + 2DIAGNOSTIC, 23, -4.540197051699e-01, 1.316554045942e-06, 1.9272e+01, 5.5598e-01, + 2DIAGNOSTIC, 24, -4.540197818677e-01, 1.263929717228e-06, 1.9912e+01, 6.3986e-01, + 2DIAGNOSTIC, 25, -4.540198584089e-01, 1.222025284214e-06, 2.0543e+01, 6.3102e-01, + 2DIAGNOSTIC, 26, -4.540197595398e-01, 1.184337966510e-06, 2.1100e+01, 5.5678e-01, + 2DIAGNOSTIC, 27, -4.540196997095e-01, 1.148024708041e-06, 2.1726e+01, 6.2624e-01, + 2DIAGNOSTIC, 28, -4.540197949302e-01, 1.115620563021e-06, 2.2339e+01, 6.1317e-01, + 2DIAGNOSTIC, 29, -4.540197351149e-01, 1.082893549088e-06, 2.2971e+01, 6.3192e-01, + 2DIAGNOSTIC, 30, -4.540195606562e-01, 1.049146188425e-06, 2.3591e+01, 6.1997e-01, + 2DIAGNOSTIC, 31, -4.540193379673e-01, 1.009357303114e-06, 2.4175e+01, 5.8352e-01, + Elapsed time (stage 0): 2.4553e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.001043003156e-01, 1.797693134862e+308, 1.8216e-01, 1.8216e-01, + 2DIAGNOSTIC, 2, -7.018816186680e-01, 1.797693134862e+308, 1.8439e-01, 2.2280e-03, + 2DIAGNOSTIC, 3, -7.039450214253e-01, 1.797693134862e+308, 1.8663e-01, 2.2371e-03, + 2DIAGNOSTIC, 4, -7.059705883622e-01, 1.797693134862e+308, 1.8896e-01, 2.3339e-03, + 2DIAGNOSTIC, 5, -7.083664377543e-01, 1.797693134862e+308, 1.9111e-01, 2.1539e-03, + 2DIAGNOSTIC, 6, -7.119195224689e-01, 1.797693134862e+308, 1.9318e-01, 2.0690e-03, + 2DIAGNOSTIC, 7, -7.149497805545e-01, 1.797693134862e+308, 1.9529e-01, 2.1091e-03, + 2DIAGNOSTIC, 8, -7.179107037917e-01, 1.797693134862e+308, 1.9851e-01, 3.2139e-03, + 2DIAGNOSTIC, 9, -7.185169826251e-01, 1.797693134862e+308, 2.0192e-01, 3.4170e-03, + 2DIAGNOSTIC, 10, -7.186314404232e-01, 1.909785622809e-03, 2.0415e-01, 2.2290e-03, + 2DIAGNOSTIC, 11, -7.188456904121e-01, 1.585816646749e-03, 2.0671e-01, 2.5599e-03, + 2DIAGNOSTIC, 12, -7.191063895357e-01, 1.240175382537e-03, 2.0920e-01, 2.4891e-03, + 2DIAGNOSTIC, 13, -7.192040373637e-01, 9.017370709963e-04, 2.1148e-01, 2.2781e-03, + 2DIAGNOSTIC, 14, -7.197849157563e-01, 6.048232914618e-04, 2.1404e-01, 2.5649e-03, + 2DIAGNOSTIC, 15, -7.199969952154e-01, 3.612753050311e-04, 2.1661e-01, 2.5618e-03, + 2DIAGNOSTIC, 16, -7.198626617596e-01, 1.995266927110e-04, 2.1893e-01, 2.3191e-03, + 2DIAGNOSTIC, 17, -7.198876032487e-01, 1.087869488515e-04, 2.2127e-01, 2.3470e-03, + 2DIAGNOSTIC, 18, -7.203279595461e-01, 9.315096947497e-05, 2.2422e-01, 2.9478e-03, + 2DIAGNOSTIC, 19, -7.204450060074e-01, 8.539025022249e-05, 2.2661e-01, 2.3849e-03, + 2DIAGNOSTIC, 20, -7.205535424869e-01, 7.498237029612e-05, 2.2941e-01, 2.8050e-03, + 2DIAGNOSTIC, 21, -7.212455094362e-01, 7.607211543699e-05, 2.3205e-01, 2.6360e-03, + 2DIAGNOSTIC, 22, -7.220730643458e-01, 8.955649488882e-05, 2.3510e-01, 3.0501e-03, + 2DIAGNOSTIC, 23, -7.235681059222e-01, 1.204450722240e-04, 2.3908e-01, 3.9830e-03, + 2DIAGNOSTIC, 24, -7.243178813751e-01, 1.590277050229e-04, 2.4218e-01, 3.0961e-03, + 2DIAGNOSTIC, 25, -7.244469271867e-01, 1.853618014539e-04, 2.4522e-01, 3.0489e-03, + 2DIAGNOSTIC, 26, -7.243462882458e-01, 1.890821165501e-04, 2.4807e-01, 2.8470e-03, + 2DIAGNOSTIC, 27, -7.241784950340e-01, 1.725222087227e-04, 2.5124e-01, 3.1719e-03, + 2DIAGNOSTIC, 28, -7.240708230610e-01, 1.454795896114e-04, 2.5400e-01, 2.7590e-03, + 2DIAGNOSTIC, 29, -7.240962974185e-01, 1.086296291205e-04, 2.5639e-01, 2.3890e-03, + 2DIAGNOSTIC, 30, -7.239886953019e-01, 6.417438020957e-05, 2.5909e-01, 2.6941e-03, + 2DIAGNOSTIC, 31, -7.240091623442e-01, 2.586249386038e-05, 2.6145e-01, 2.3639e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.177193773535e-01, 1.797693134862e+308, 4.7866e-01, 2.1721e-01, + 2DIAGNOSTIC, 2, -6.183443242977e-01, 1.797693134862e+308, 4.9330e-01, 1.4642e-02, + 2DIAGNOSTIC, 3, -6.190738962955e-01, 1.797693134862e+308, 5.0817e-01, 1.4868e-02, + 2DIAGNOSTIC, 4, -6.202040428110e-01, 1.797693134862e+308, 5.2268e-01, 1.4503e-02, + 2DIAGNOSTIC, 5, -6.216770827377e-01, 1.797693134862e+308, 5.3738e-01, 1.4706e-02, + 2DIAGNOSTIC, 6, -6.225852158932e-01, 1.797693134862e+308, 5.5185e-01, 1.4465e-02, + 2DIAGNOSTIC, 7, -6.233137873459e-01, 1.797693134862e+308, 5.6893e-01, 1.7081e-02, + 2DIAGNOSTIC, 8, -6.236982622215e-01, 1.797693134862e+308, 5.8791e-01, 1.8986e-02, + 2DIAGNOSTIC, 9, -6.241527980949e-01, 1.797693134862e+308, 6.0954e-01, 2.1630e-02, + 2DIAGNOSTIC, 10, -6.241462075753e-01, 7.508636342064e-04, 6.2363e-01, 1.4083e-02, + 2DIAGNOSTIC, 11, -6.244581432120e-01, 6.005197102886e-04, 6.3775e-01, 1.4121e-02, + 2DIAGNOSTIC, 12, -6.247115620460e-01, 4.551216488199e-04, 6.5267e-01, 1.4925e-02, + 2DIAGNOSTIC, 13, -6.250419638159e-01, 3.280675128706e-04, 6.6837e-01, 1.5699e-02, + 2DIAGNOSTIC, 14, -6.254895103237e-01, 2.401454259230e-04, 6.8432e-01, 1.5946e-02, + 2DIAGNOSTIC, 15, -6.264586878185e-01, 2.160199197007e-04, 7.0584e-01, 2.1523e-02, + 2DIAGNOSTIC, 16, -6.270849773057e-01, 2.181460060835e-04, 7.2678e-01, 2.0941e-02, + 2DIAGNOSTIC, 17, -6.271524882326e-01, 2.211793627147e-04, 7.4266e-01, 1.5875e-02, + 2DIAGNOSTIC, 18, -6.272925678296e-01, 2.170342455921e-04, 7.5713e-01, 1.4477e-02, + 2DIAGNOSTIC, 19, -6.273611067535e-01, 2.059951859033e-04, 7.7181e-01, 1.4679e-02, + 2DIAGNOSTIC, 20, -6.275216204972e-01, 1.801329373592e-04, 7.8625e-01, 1.4440e-02, + 2DIAGNOSTIC, 21, -6.277636932836e-01, 1.518735768904e-04, 8.0136e-01, 1.5110e-02, + 2DIAGNOSTIC, 22, -6.280583496571e-01, 1.235826109786e-04, 8.2194e-01, 2.0582e-02, + 2DIAGNOSTIC, 23, -6.282105314447e-01, 9.595691554230e-05, 8.3852e-01, 1.6575e-02, + 2DIAGNOSTIC, 24, -6.282088711671e-01, 6.989185164244e-05, 8.5599e-01, 1.7468e-02, + 2DIAGNOSTIC, 25, -6.286770512274e-01, 6.542213480203e-05, 8.7310e-01, 1.7114e-02, + 2DIAGNOSTIC, 26, -6.290971752339e-01, 7.329240056538e-05, 8.9020e-01, 1.7097e-02, + 2DIAGNOSTIC, 27, -6.291323032450e-01, 7.529212237611e-05, 9.1143e-01, 2.1231e-02, + 2DIAGNOSTIC, 28, -6.291263903078e-01, 7.253189535097e-05, 9.2861e-01, 1.7182e-02, + 2DIAGNOSTIC, 29, -6.291171199886e-01, 6.428074363092e-05, 9.4448e-01, 1.5870e-02, + 2DIAGNOSTIC, 30, -6.291091103940e-01, 5.277471131755e-05, 9.6130e-01, 1.6817e-02, + 2DIAGNOSTIC, 31, -6.291120259282e-01, 4.048314927140e-05, 9.7813e-01, 1.6835e-02, + 2DIAGNOSTIC, 32, -6.290998166371e-01, 2.924656019729e-05, 9.9426e-01, 1.6123e-02, + 2DIAGNOSTIC, 33, -6.290738547788e-01, 1.792905157075e-05, 1.0081e+00, 1.3799e-02, + 2DIAGNOSTIC, 34, -6.290782031977e-01, 5.614002549705e-06, 1.0246e+00, 1.6577e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.193278108377e-01, 1.797693134862e+308, 1.4000e+00, 3.7539e-01, + 2DIAGNOSTIC, 2, -5.203294698707e-01, 1.797693134862e+308, 1.4983e+00, 9.8262e-02, + 2DIAGNOSTIC, 3, -5.216408554865e-01, 1.797693134862e+308, 1.5958e+00, 9.7553e-02, + 2DIAGNOSTIC, 4, -5.226654443161e-01, 1.797693134862e+308, 1.7001e+00, 1.0428e-01, + 2DIAGNOSTIC, 5, -5.228664896194e-01, 1.797693134862e+308, 1.8699e+00, 1.6975e-01, + 2DIAGNOSTIC, 6, -5.228611022163e-01, 1.797693134862e+308, 2.0052e+00, 1.3531e-01, + 2DIAGNOSTIC, 7, -5.228527793040e-01, 1.797693134862e+308, 2.1428e+00, 1.3762e-01, + 2DIAGNOSTIC, 8, -5.228545824418e-01, 1.797693134862e+308, 2.2999e+00, 1.5711e-01, + 2DIAGNOSTIC, 9, -5.228548582532e-01, 1.797693134862e+308, 2.4128e+00, 1.1287e-01, + 2DIAGNOSTIC, 10, -5.228522116210e-01, 3.662271600360e-04, 2.5283e+00, 1.1554e-01, + 2DIAGNOSTIC, 11, -5.228510097890e-01, 1.862562061965e-04, 2.6340e+00, 1.0566e-01, + 2DIAGNOSTIC, 12, -5.228499757512e-01, 6.426744075555e-05, 2.7511e+00, 1.1713e-01, + 2DIAGNOSTIC, 13, -5.228502413423e-01, 9.275376515974e-06, 2.8559e+00, 1.0475e-01, + 2DIAGNOSTIC, 14, -5.228492449807e-01, 1.077149331091e-06, 2.9723e+00, 1.1643e-01, + 2DIAGNOSTIC, 15, -5.228496404518e-01, 1.394488711795e-06, 3.0736e+00, 1.0128e-01, + 2DIAGNOSTIC, 16, -5.228488639452e-01, 1.538825455491e-06, 3.1761e+00, 1.0252e-01, + 2DIAGNOSTIC, 17, -5.228499937735e-01, 1.475579443910e-06, 3.2907e+00, 1.1458e-01, + 2DIAGNOSTIC, 18, -5.228480980045e-01, 1.450492160160e-06, 3.3916e+00, 1.0092e-01, + 2DIAGNOSTIC, 19, -5.228463921503e-01, 1.419848670678e-06, 3.5061e+00, 1.1446e-01, + 2DIAGNOSTIC, 20, -5.228442661311e-01, 1.288140237539e-06, 3.6073e+00, 1.0127e-01, + 2DIAGNOSTIC, 21, -5.228426679302e-01, 1.125591206567e-06, 3.7230e+00, 1.1562e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.527242969115e-01, 1.797693134862e+308, 5.0598e+00, 1.3368e+00, + 2DIAGNOSTIC, 2, -4.530174777417e-01, 1.797693134862e+308, 5.6699e+00, 6.1012e-01, + 2DIAGNOSTIC, 3, -4.532750616245e-01, 1.797693134862e+308, 6.2763e+00, 6.0642e-01, + 2DIAGNOSTIC, 4, -4.533992303745e-01, 1.797693134862e+308, 6.8862e+00, 6.0984e-01, + 2DIAGNOSTIC, 5, -4.534395362669e-01, 1.797693134862e+308, 7.4811e+00, 5.9489e-01, + 2DIAGNOSTIC, 6, -4.535366170171e-01, 1.797693134862e+308, 8.4506e+00, 9.6956e-01, + 2DIAGNOSTIC, 7, -4.535756958069e-01, 1.797693134862e+308, 9.0409e+00, 5.9028e-01, + 2DIAGNOSTIC, 8, -4.535838627132e-01, 1.797693134862e+308, 9.6057e+00, 5.6475e-01, + 2DIAGNOSTIC, 9, -4.536182703071e-01, 1.797693134862e+308, 1.0198e+01, 5.9219e-01, + 2DIAGNOSTIC, 10, -4.537108717900e-01, 1.176866355672e-04, 1.0779e+01, 5.8136e-01, + 2DIAGNOSTIC, 11, -4.541196755887e-01, 1.003554529907e-04, 1.1430e+01, 6.5041e-01, + 2DIAGNOSTIC, 12, -4.546166651939e-01, 1.175818175264e-04, 1.2677e+01, 1.2469e+00, + 2DIAGNOSTIC, 13, -4.546191135676e-01, 1.338423223452e-04, 1.3364e+01, 6.8753e-01, + 2DIAGNOSTIC, 14, -4.546185297034e-01, 1.419217973794e-04, 1.4311e+01, 9.4662e-01, + 2DIAGNOSTIC, 15, -4.546180307878e-01, 1.379512607380e-04, 1.5083e+01, 7.7185e-01, + 2DIAGNOSTIC, 16, -4.546176686498e-01, 1.254365751044e-04, 1.6025e+01, 9.4238e-01, + 2DIAGNOSTIC, 17, -4.546176111678e-01, 1.041670829598e-04, 1.6721e+01, 6.9583e-01, + 2DIAGNOSTIC, 18, -4.546175049945e-01, 7.626563093988e-05, 1.7523e+01, 8.0220e-01, + 2DIAGNOSTIC, 19, -4.546174927888e-01, 4.587821575405e-05, 1.8221e+01, 6.9784e-01, + 2DIAGNOSTIC, 20, -4.546173255049e-01, 1.714226612700e-05, 1.8999e+01, 7.7783e-01, + 2DIAGNOSTIC, 21, -4.546172354482e-01, 1.457924483916e-06, 1.9649e+01, 6.5075e-01, + 2DIAGNOSTIC, 22, -4.546168805678e-01, 1.335126838871e-06, 2.0373e+01, 7.2348e-01, + 2DIAGNOSTIC, 23, -4.546166677603e-01, 1.294756872161e-06, 2.0998e+01, 6.2504e-01, + 2DIAGNOSTIC, 24, -4.546168318331e-01, 1.255516891348e-06, 2.1719e+01, 7.2138e-01, + 2DIAGNOSTIC, 25, -4.546168407757e-01, 1.213815506655e-06, 2.2498e+01, 7.7860e-01, + 2DIAGNOSTIC, 26, -4.546167751047e-01, 1.170717826855e-06, 2.3274e+01, 7.7587e-01, + 2DIAGNOSTIC, 27, -4.546166688277e-01, 1.132389686333e-06, 2.3896e+01, 6.2223e-01, + 2DIAGNOSTIC, 28, -4.546164411938e-01, 1.093852733093e-06, 2.4610e+01, 7.1418e-01, + 2DIAGNOSTIC, 29, -4.546165390562e-01, 1.063920659093e-06, 2.5336e+01, 7.2588e-01, + 2DIAGNOSTIC, 30, -4.546163155722e-01, 1.030783260851e-06, 2.5952e+01, 6.1622e-01, + 2DIAGNOSTIC, 31, -4.546163065273e-01, 1.000991586619e-06, 2.6659e+01, 7.0629e-01, + Elapsed time (stage 1): 2.7083e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.108498941699e-01, 1.797693134862e+308, 2.6378e-01, 2.6378e-01, + 1DIAGNOSTIC, 2, -9.190743470638e-01, 1.797693134862e+308, 3.5895e-01, 9.5164e-02, + 1DIAGNOSTIC, 3, -9.251748714612e-01, 1.797693134862e+308, 4.5551e-01, 9.6569e-02, + 1DIAGNOSTIC, 4, -9.296372487805e-01, 1.797693134862e+308, 5.4819e-01, 9.2676e-02, + 1DIAGNOSTIC, 5, -9.333648803785e-01, 1.797693134862e+308, 6.4444e-01, 9.6251e-02, + 1DIAGNOSTIC, 6, -9.364390959383e-01, 1.797693134862e+308, 7.4382e-01, 9.9382e-02, + 1DIAGNOSTIC, 7, -9.391175650953e-01, 1.797693134862e+308, 8.4491e-01, 1.0109e-01, + 1DIAGNOSTIC, 8, -9.412215464961e-01, 1.797693134862e+308, 9.4332e-01, 9.8405e-02, + 1DIAGNOSTIC, 9, -9.431144889730e-01, 1.797693134862e+308, 1.0425e+00, 9.9145e-02, + 1DIAGNOSTIC, 10, -9.447156643510e-01, 2.169736197689e-03, 1.1451e+00, 1.0265e-01, + 1DIAGNOSTIC, 11, -9.460481696467e-01, 1.597595386138e-03, 1.2494e+00, 1.0432e-01, + 1DIAGNOSTIC, 12, -9.471494217756e-01, 1.212510629598e-03, 1.3501e+00, 1.0065e-01, + 1DIAGNOSTIC, 13, -9.480723223378e-01, 9.405665665699e-04, 1.4520e+00, 1.0193e-01, + 1DIAGNOSTIC, 14, -9.488417861183e-01, 7.348078731156e-04, 1.5506e+00, 9.8621e-02, + 1DIAGNOSTIC, 15, -9.494798939753e-01, 5.771298284316e-04, 1.6563e+00, 1.0571e-01, + 1DIAGNOSTIC, 16, -9.500221087498e-01, 4.542712713407e-04, 1.7561e+00, 9.9724e-02, + 1DIAGNOSTIC, 17, -9.504834650843e-01, 3.597252046880e-04, 1.8533e+00, 9.7234e-02, + 1DIAGNOSTIC, 18, -9.508860832784e-01, 2.843452776770e-04, 1.9556e+00, 1.0229e-01, + 1DIAGNOSTIC, 19, -9.513157848370e-01, 2.273248562848e-04, 2.0565e+00, 1.0092e-01, + 1DIAGNOSTIC, 20, -9.516263418480e-01, 1.836029848368e-04, 2.1562e+00, 9.9657e-02, + 1DIAGNOSTIC, 21, -9.518977681241e-01, 1.499398021746e-04, 2.2547e+00, 9.8512e-02, + 1DIAGNOSTIC, 22, -9.521275004038e-01, 1.235670979810e-04, 2.3569e+00, 1.0220e-01, + 1DIAGNOSTIC, 23, -9.523270714463e-01, 1.026287565096e-04, 2.4566e+00, 9.9722e-02, + 1DIAGNOSTIC, 24, -9.525010444237e-01, 8.565886562500e-05, 2.5529e+00, 9.6332e-02, + 1DIAGNOSTIC, 25, -9.526519179760e-01, 7.153334244030e-05, 2.6560e+00, 1.0305e-01, + 1DIAGNOSTIC, 26, -9.527837922189e-01, 5.962948789857e-05, 2.7578e+00, 1.0183e-01, + 1DIAGNOSTIC, 27, -9.529486817136e-01, 5.003370599178e-05, 2.8574e+00, 9.9607e-02, + 1DIAGNOSTIC, 28, -9.530465729203e-01, 4.180041911290e-05, 2.9568e+00, 9.9373e-02, + 1DIAGNOSTIC, 29, -9.531334749284e-01, 3.561240638417e-05, 3.0610e+00, 1.0417e-01, + 1DIAGNOSTIC, 30, -9.532088440263e-01, 3.040781068643e-05, 3.1656e+00, 1.0465e-01, + 1DIAGNOSTIC, 31, -9.532746781167e-01, 2.599586172639e-05, 3.2662e+00, 1.0056e-01, + 1DIAGNOSTIC, 32, -9.533332268489e-01, 2.216478328663e-05, 3.3701e+00, 1.0391e-01, + 1DIAGNOSTIC, 33, -9.533858829098e-01, 1.882858057399e-05, 3.4731e+00, 1.0298e-01, + 1DIAGNOSTIC, 34, -9.534319053476e-01, 1.592294825499e-05, 3.5722e+00, 9.9104e-02, + 1DIAGNOSTIC, 35, -9.534718711603e-01, 1.338448661330e-05, 3.6760e+00, 1.0380e-01, + 1DIAGNOSTIC, 36, -9.535056655444e-01, 1.115589550353e-05, 3.7819e+00, 1.0593e-01, + 1DIAGNOSTIC, 37, -9.535337662495e-01, 9.624455731855e-06, 3.8810e+00, 9.9102e-02, + 1DIAGNOSTIC, 38, -9.535576241160e-01, 8.290029190065e-06, 3.9803e+00, 9.9278e-02, + 1DIAGNOSTIC, 39, -9.535781958901e-01, 7.131910905168e-06, 4.0837e+00, 1.0343e-01, + 1DIAGNOSTIC, 40, -9.535958488717e-01, 6.119795160176e-06, 4.1808e+00, 9.7048e-02, + 1DIAGNOSTIC, 41, -9.536106698980e-01, 5.232971101252e-06, 4.2800e+00, 9.9246e-02, + 1DIAGNOSTIC, 42, -9.536231069103e-01, 4.464516871104e-06, 4.3813e+00, 1.0133e-01, + 1DIAGNOSTIC, 43, -9.536332415055e-01, 3.811131891462e-06, 4.4859e+00, 1.0458e-01, + 1DIAGNOSTIC, 44, -9.536407450076e-01, 3.254770843116e-06, 4.5852e+00, 9.9332e-02, + 1DIAGNOSTIC, 45, -9.536463133919e-01, 2.781333920284e-06, 4.6890e+00, 1.0373e-01, + 1DIAGNOSTIC, 46, -9.536506468469e-01, 2.376167081024e-06, 4.7889e+00, 9.9881e-02, + 1DIAGNOSTIC, 47, -9.536530065630e-01, 2.019338863367e-06, 4.8885e+00, 9.9641e-02, + 1DIAGNOSTIC, 48, -9.536550962807e-01, 1.709430578169e-06, 4.9927e+00, 1.0416e-01, + 1DIAGNOSTIC, 49, -9.536561317325e-01, 1.442852789954e-06, 5.0977e+00, 1.0501e-01, + 1DIAGNOSTIC, 50, -9.536562608368e-01, 1.216591206943e-06, 5.1966e+00, 9.8885e-02, + 1DIAGNOSTIC, 51, -9.536556454761e-01, 1.026406269825e-06, 5.3003e+00, 1.0376e-01, + 1DIAGNOSTIC, 52, -9.536547372699e-01, 8.709236407264e-07, 5.4019e+00, 1.0160e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.120006477625e-01, 1.797693134862e+308, 6.2505e+00, 8.4856e-01, + 1DIAGNOSTIC, 2, -9.162795311601e-01, 1.797693134862e+308, 6.9419e+00, 6.9140e-01, + 1DIAGNOSTIC, 3, -9.200041725930e-01, 1.797693134862e+308, 7.6127e+00, 6.7085e-01, + 1DIAGNOSTIC, 4, -9.226296558859e-01, 1.797693134862e+308, 8.2904e+00, 6.7768e-01, + 1DIAGNOSTIC, 5, -9.249812445167e-01, 1.797693134862e+308, 8.9711e+00, 6.8069e-01, + 1DIAGNOSTIC, 6, -9.270585290475e-01, 1.797693134862e+308, 9.6558e+00, 6.8471e-01, + 1DIAGNOSTIC, 7, -9.289036300573e-01, 1.797693134862e+308, 1.0334e+01, 6.7774e-01, + 1DIAGNOSTIC, 8, -9.305700604568e-01, 1.797693134862e+308, 1.1022e+01, 6.8828e-01, + 1DIAGNOSTIC, 9, -9.320482679770e-01, 1.797693134862e+308, 1.1724e+01, 7.0265e-01, + 1DIAGNOSTIC, 10, -9.332071723518e-01, 1.406848045037e-03, 1.2412e+01, 6.8758e-01, + 1DIAGNOSTIC, 11, -9.343281136725e-01, 1.094564549948e-03, 1.3100e+01, 6.8781e-01, + 1DIAGNOSTIC, 12, -9.352414750134e-01, 8.677045544075e-04, 1.3790e+01, 6.9013e-01, + 1DIAGNOSTIC, 13, -9.360585908179e-01, 7.039375592341e-04, 1.4472e+01, 6.8235e-01, + 1DIAGNOSTIC, 14, -9.367898100221e-01, 5.725983903787e-04, 1.5163e+01, 6.9042e-01, + 1DIAGNOSTIC, 15, -9.374454654963e-01, 4.675154535019e-04, 1.5879e+01, 7.1655e-01, + 1DIAGNOSTIC, 16, -9.380417210873e-01, 3.835243967033e-04, 1.6552e+01, 6.7229e-01, + 1DIAGNOSTIC, 17, -9.385707320687e-01, 3.165280600649e-04, 1.7229e+01, 6.7779e-01, + 1DIAGNOSTIC, 18, -9.390446462776e-01, 2.638521197370e-04, 1.7930e+01, 7.0088e-01, + 1DIAGNOSTIC, 19, -9.394706866047e-01, 2.227757260141e-04, 1.8628e+01, 6.9762e-01, + 1DIAGNOSTIC, 20, -9.398564293648e-01, 1.885480075218e-04, 1.9314e+01, 6.8580e-01, + 1DIAGNOSTIC, 21, -9.402062094138e-01, 1.613174165042e-04, 1.9990e+01, 6.7633e-01, + 1DIAGNOSTIC, 22, -9.405317507632e-01, 1.386304789252e-04, 2.0667e+01, 6.7678e-01, + 1DIAGNOSTIC, 23, -9.408217761441e-01, 1.195945651505e-04, 2.1325e+01, 6.5819e-01, + 1DIAGNOSTIC, 24, -9.410863582212e-01, 1.035714922238e-04, 2.2018e+01, 6.9264e-01, + 1DIAGNOSTIC, 25, -9.413276879889e-01, 9.003631388350e-05, 2.2704e+01, 6.8616e-01, + 1DIAGNOSTIC, 26, -9.415526613580e-01, 7.870546186045e-05, 2.3371e+01, 6.6743e-01, + 1DIAGNOSTIC, 27, -9.417559222156e-01, 6.907644825559e-05, 2.4049e+01, 6.7797e-01, + 1DIAGNOSTIC, 28, -9.419432838497e-01, 6.083714769176e-05, 2.4737e+01, 6.8740e-01, + 1DIAGNOSTIC, 29, -9.421149674112e-01, 5.372867880124e-05, 2.5426e+01, 6.8960e-01, + 1DIAGNOSTIC, 30, -9.422730768827e-01, 4.756929565815e-05, 2.6111e+01, 6.8477e-01, + 1DIAGNOSTIC, 31, -9.424140375783e-01, 4.215999740019e-05, 2.6799e+01, 6.8852e-01, + 1DIAGNOSTIC, 32, -9.425503980884e-01, 3.753043668620e-05, 2.7484e+01, 6.8423e-01, + 1DIAGNOSTIC, 33, -9.426769350084e-01, 3.350754468944e-05, 2.8151e+01, 6.6696e-01, + 1DIAGNOSTIC, 34, -9.427990425761e-01, 3.004745592403e-05, 2.8821e+01, 6.6998e-01, + 1DIAGNOSTIC, 35, -9.429087543467e-01, 2.702864385111e-05, 2.9513e+01, 6.9281e-01, + 1DIAGNOSTIC, 36, -9.430098354457e-01, 2.441378641065e-05, 3.0191e+01, 6.7718e-01, + 1DIAGNOSTIC, 37, -9.431055302943e-01, 2.212643909518e-05, 3.0872e+01, 6.8112e-01, + 1DIAGNOSTIC, 38, -9.431945378147e-01, 2.011510143551e-05, 3.1543e+01, 6.7141e-01, + 1DIAGNOSTIC, 39, -9.432768846084e-01, 1.832230170951e-05, 3.2225e+01, 6.8157e-01, + 1DIAGNOSTIC, 40, -9.433543388946e-01, 1.671710122433e-05, 3.2893e+01, 6.6823e-01, + 1DIAGNOSTIC, 41, -9.434261499173e-01, 1.522695641366e-05, 3.3570e+01, 6.7740e-01, + 1DIAGNOSTIC, 42, -9.434950063848e-01, 1.389332644464e-05, 3.4252e+01, 6.8159e-01, + 1DIAGNOSTIC, 43, -9.435596524231e-01, 1.269828863977e-05, 3.4916e+01, 6.6401e-01, + 1DIAGNOSTIC, 44, -9.436189592283e-01, 1.165029920493e-05, 3.5588e+01, 6.7176e-01, + 1DIAGNOSTIC, 45, -9.436769564569e-01, 1.072131649430e-05, 3.6264e+01, 6.7631e-01, + 1DIAGNOSTIC, 46, -9.437302684092e-01, 9.879693602451e-06, 3.6957e+01, 6.9253e-01, + 1DIAGNOSTIC, 47, -9.437808125153e-01, 9.126310790721e-06, 3.7643e+01, 6.8666e-01, + 1DIAGNOSTIC, 48, -9.438291545834e-01, 8.452292510595e-06, 3.8319e+01, 6.7573e-01, + 1DIAGNOSTIC, 49, -9.438743609323e-01, 7.838961676297e-06, 3.9002e+01, 6.8290e-01, + 1DIAGNOSTIC, 50, -9.439156717526e-01, 7.272377091215e-06, 3.9686e+01, 6.8417e-01, + 1DIAGNOSTIC, 51, -9.439560198885e-01, 6.750206588781e-06, 4.0381e+01, 6.9516e-01, + 1DIAGNOSTIC, 52, -9.439944926702e-01, 6.278283692974e-06, 4.1050e+01, 6.6857e-01, + 1DIAGNOSTIC, 53, -9.440307040849e-01, 5.850085374091e-06, 4.1730e+01, 6.8035e-01, + 1DIAGNOSTIC, 54, -9.440668022757e-01, 5.462471838510e-06, 4.2411e+01, 6.8141e-01, + 1DIAGNOSTIC, 55, -9.440977074192e-01, 5.104681462850e-06, 4.3096e+01, 6.8503e-01, + 1DIAGNOSTIC, 56, -9.441288306726e-01, 4.776540509833e-06, 4.3791e+01, 6.9438e-01, + 1DIAGNOSTIC, 57, -9.441576915623e-01, 4.472141507783e-06, 4.4478e+01, 6.8683e-01, + 1DIAGNOSTIC, 58, -9.441856847695e-01, 4.195678354413e-06, 4.5159e+01, 6.8163e-01, + 1DIAGNOSTIC, 59, -9.442098867407e-01, 3.929831175156e-06, 4.5851e+01, 6.9126e-01, + 1DIAGNOSTIC, 60, -9.442354731173e-01, 3.680678571150e-06, 4.6552e+01, 7.0181e-01, + 1DIAGNOSTIC, 61, -9.442598765921e-01, 3.454136325260e-06, 4.7232e+01, 6.7923e-01, + 1DIAGNOSTIC, 62, -9.442815606960e-01, 3.242683036798e-06, 4.7904e+01, 6.7232e-01, + 1DIAGNOSTIC, 63, -9.443034690667e-01, 3.051101088888e-06, 4.8574e+01, 6.7044e-01, + 1DIAGNOSTIC, 64, -9.443237651128e-01, 2.884320801092e-06, 4.9247e+01, 6.7272e-01, + 1DIAGNOSTIC, 65, -9.443435077521e-01, 2.725671125893e-06, 4.9925e+01, 6.7763e-01, + 1DIAGNOSTIC, 66, -9.443629350456e-01, 2.585402464041e-06, 5.0606e+01, 6.8078e-01, + 1DIAGNOSTIC, 67, -9.443831203266e-01, 2.465535255881e-06, 5.1275e+01, 6.6902e-01, + 1DIAGNOSTIC, 68, -9.444003026074e-01, 2.356138664002e-06, 5.1936e+01, 6.6194e-01, + 1DIAGNOSTIC, 69, -9.444173171542e-01, 2.246523537145e-06, 5.2619e+01, 6.8267e-01, + 1DIAGNOSTIC, 70, -9.444327037181e-01, 2.142918087289e-06, 5.3301e+01, 6.8179e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.887763330868e-01, 1.797693134862e+308, 5.8995e+01, 5.6939e+00, + 1DIAGNOSTIC, 2, -8.918517192679e-01, 1.797693134862e+308, 6.4384e+01, 5.3887e+00, + 1DIAGNOSTIC, 3, -8.948767394377e-01, 1.797693134862e+308, 6.9837e+01, 5.4530e+00, + 1DIAGNOSTIC, 4, -8.977253070506e-01, 1.797693134862e+308, 7.5247e+01, 5.4107e+00, + 1DIAGNOSTIC, 5, -9.004372305943e-01, 1.797693134862e+308, 8.0681e+01, 5.4338e+00, + 1DIAGNOSTIC, 6, -9.031084134440e-01, 1.797693134862e+308, 8.6112e+01, 5.4311e+00, + 1DIAGNOSTIC, 7, -9.057117745697e-01, 1.797693134862e+308, 9.1543e+01, 5.4310e+00, + 1DIAGNOSTIC, 8, -9.079498271368e-01, 1.797693134862e+308, 9.6992e+01, 5.4484e+00, + 1DIAGNOSTIC, 9, -9.098743369416e-01, 1.797693134862e+308, 1.0243e+02, 5.4409e+00, + 1DIAGNOSTIC, 10, -9.115559749217e-01, 1.639111924670e-03, 1.0782e+02, 5.3844e+00, + 1DIAGNOSTIC, 11, -9.129086835747e-01, 1.380176488222e-03, 1.1336e+02, 5.5385e+00, + 1DIAGNOSTIC, 12, -9.141052143815e-01, 1.151883294485e-03, 1.1887e+02, 5.5120e+00, + 1DIAGNOSTIC, 13, -9.150513804701e-01, 9.501617928707e-04, 1.2442e+02, 5.5568e+00, + 1DIAGNOSTIC, 14, -9.158993783353e-01, 7.735337728917e-04, 1.2984e+02, 5.4133e+00, + 1DIAGNOSTIC, 15, -9.166678996528e-01, 6.222477553847e-04, 1.3522e+02, 5.3834e+00, + 1DIAGNOSTIC, 16, -9.173604940588e-01, 4.982506846133e-04, 1.4058e+02, 5.3588e+00, + 1DIAGNOSTIC, 17, -9.179916028671e-01, 4.022265593868e-04, 1.4594e+02, 5.3612e+00, + 1DIAGNOSTIC, 18, -9.185610737455e-01, 3.282685597882e-04, 1.5131e+02, 5.3711e+00, + 1DIAGNOSTIC, 19, -9.190764972018e-01, 2.716155091535e-04, 1.5668e+02, 5.3659e+00, + 1DIAGNOSTIC, 20, -9.195456391709e-01, 2.288478272188e-04, 1.6205e+02, 5.3726e+00, + 1DIAGNOSTIC, 21, -9.199719246327e-01, 1.951537125774e-04, 1.6742e+02, 5.3700e+00, + 1DIAGNOSTIC, 22, -9.203601424763e-01, 1.687285651619e-04, 1.7281e+02, 5.3923e+00, + 1DIAGNOSTIC, 23, -9.207184465094e-01, 1.464696649035e-04, 1.7819e+02, 5.3761e+00, + 1DIAGNOSTIC, 24, -9.210453131308e-01, 1.275753202556e-04, 1.8355e+02, 5.3578e+00, + 1DIAGNOSTIC, 25, -9.213439659627e-01, 1.115078982283e-04, 1.8894e+02, 5.3960e+00, + 1DIAGNOSTIC, 26, -9.216188670453e-01, 9.778230691204e-05, 1.9430e+02, 5.3618e+00, + 1DIAGNOSTIC, 27, -9.218790707396e-01, 8.615379946938e-05, 1.9970e+02, 5.3986e+00, + 1DIAGNOSTIC, 28, -9.221211440556e-01, 7.626785054982e-05, 2.0506e+02, 5.3528e+00, + 1DIAGNOSTIC, 29, -9.223461776771e-01, 6.782877036426e-05, 2.1047e+02, 5.4169e+00, + 1DIAGNOSTIC, 30, -9.225590142882e-01, 6.064074753075e-05, 2.1581e+02, 5.3406e+00, + 1DIAGNOSTIC, 31, -9.227531794351e-01, 5.443449065902e-05, 2.2119e+02, 5.3718e+00, + 1DIAGNOSTIC, 32, -9.229385408673e-01, 4.906749954184e-05, 2.2654e+02, 5.3559e+00, + 1DIAGNOSTIC, 33, -9.231138006979e-01, 4.443581450540e-05, 2.3189e+02, 5.3479e+00, + 1DIAGNOSTIC, 34, -9.232800720911e-01, 4.040663920488e-05, 2.3727e+02, 5.3788e+00, + 1DIAGNOSTIC, 35, -9.234368912056e-01, 3.685565311562e-05, 2.4263e+02, 5.3658e+00, + 1DIAGNOSTIC, 36, -9.235911490257e-01, 3.374511511291e-05, 2.4797e+02, 5.3322e+00, + 1DIAGNOSTIC, 37, -9.237360506579e-01, 3.103629034739e-05, 2.5333e+02, 5.3618e+00, + 1DIAGNOSTIC, 38, -9.238769228965e-01, 2.868931548452e-05, 2.5867e+02, 5.3454e+00, + 1DIAGNOSTIC, 39, -9.240125988839e-01, 2.664554625091e-05, 2.6409e+02, 5.4166e+00, + 1DIAGNOSTIC, 40, -9.241425430811e-01, 2.487025416608e-05, 2.6946e+02, 5.3659e+00, + 1DIAGNOSTIC, 41, -9.242658846637e-01, 2.325861668835e-05, 2.7483e+02, 5.3717e+00, + 1DIAGNOSTIC, 42, -9.243835903308e-01, 2.178943838528e-05, 2.8021e+02, 5.3875e+00, + 1DIAGNOSTIC, 43, -9.244982172041e-01, 2.044614202249e-05, 2.8561e+02, 5.3909e+00, + 1DIAGNOSTIC, 44, -9.246067130570e-01, 1.919393217087e-05, 2.9094e+02, 5.3363e+00, + 1DIAGNOSTIC, 45, -9.247101345880e-01, 1.800209860407e-05, 2.9633e+02, 5.3836e+00, + 1DIAGNOSTIC, 46, -9.248091795810e-01, 1.689488657167e-05, 3.0169e+02, 5.3653e+00, + 1DIAGNOSTIC, 47, -9.249043535194e-01, 1.584820055692e-05, 3.0703e+02, 5.3352e+00, + 1DIAGNOSTIC, 48, -9.249972558253e-01, 1.488335853222e-05, 3.1237e+02, 5.3473e+00, + 1DIAGNOSTIC, 49, -9.250893589257e-01, 1.401841407457e-05, 3.1774e+02, 5.3636e+00, + 1DIAGNOSTIC, 50, -9.251791385356e-01, 1.325177083945e-05, 3.2310e+02, 5.3677e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.839475696868e-01, 1.797693134862e+308, 3.6690e+02, 4.3800e+01, + 1DIAGNOSTIC, 2, -8.853850287324e-01, 1.797693134862e+308, 4.1005e+02, 4.3147e+01, + 1DIAGNOSTIC, 3, -8.869849041493e-01, 1.797693134862e+308, 4.5341e+02, 4.3362e+01, + 1DIAGNOSTIC, 4, -8.886121616594e-01, 1.797693134862e+308, 4.9668e+02, 4.3269e+01, + 1DIAGNOSTIC, 5, -8.902451558216e-01, 1.797693134862e+308, 5.4023e+02, 4.3544e+01, + 1DIAGNOSTIC, 6, -8.920893842372e-01, 1.797693134862e+308, 5.8373e+02, 4.3501e+01, + 1DIAGNOSTIC, 7, -8.939808419969e-01, 1.797693134862e+308, 6.2712e+02, 4.3389e+01, + 1DIAGNOSTIC, 8, -8.955582321037e-01, 1.797693134862e+308, 6.7039e+02, 4.3279e+01, + 1DIAGNOSTIC, 9, -8.971635058758e-01, 1.797693134862e+308, 7.1357e+02, 4.3170e+01, + 1DIAGNOSTIC, 10, -8.986486522561e-01, 1.081691048179e-03, 7.5686e+02, 4.3293e+01, + 1DIAGNOSTIC, 11, -8.998293096844e-01, 9.711892454144e-04, 8.0033e+02, 4.3469e+01, + 1DIAGNOSTIC, 12, -9.009455581548e-01, 8.592524877089e-04, 8.4364e+02, 4.3310e+01, + 1DIAGNOSTIC, 13, -9.019326356822e-01, 7.498965267375e-04, 8.8705e+02, 4.3414e+01, + 1DIAGNOSTIC, 14, -9.026827064064e-01, 6.417639149079e-04, 9.3058e+02, 4.3527e+01, + 1DIAGNOSTIC, 15, -9.033421578105e-01, 5.376927063672e-04, 9.7376e+02, 4.3182e+01, + 1DIAGNOSTIC, 16, -9.038243305551e-01, 4.431629808683e-04, 1.0174e+03, 4.3658e+01, + 1DIAGNOSTIC, 17, -9.043611554922e-01, 3.641517816807e-04, 1.0610e+03, 4.3619e+01, + 1DIAGNOSTIC, 18, -9.047401408961e-01, 2.944533144055e-04, 1.1047e+03, 4.3642e+01, + 1DIAGNOSTIC, 19, -9.050771487750e-01, 2.370157895141e-04, 1.1483e+03, 4.3642e+01, + 1DIAGNOSTIC, 20, -9.053973298201e-01, 1.918450705880e-04, 1.1917e+03, 4.3412e+01, + Elapsed time (stage 2): 1192 + + +Total elapsed time: 1244 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:00 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:03 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:08 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:12 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23599 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:12 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:17 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:17 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23652 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:17 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:20 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23694 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:20 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23699 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:20 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:51 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:53 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:53 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:54 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:55 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:57 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:57 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:58 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:59 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC006 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:22 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC006 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:23 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC006 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:23 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC006 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:23 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24499 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:25 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:25 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24542 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:27 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:27 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC006_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 72.267 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/logs/proc_func_18-03-2024-13673.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:33 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC006 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/QC/sub-PNC006_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC006* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 72.317 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC006_ses-03 +========================reprocessing without filter=================== +sub-PNC007_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC007 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC007 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC007 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC007 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:47 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:47 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:30:53 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:32:59 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:33:13 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.26 (mm) at sub-brick 6 +++ Max delta displ in automask = 0.12 (mm) at sub-brick 172 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:46:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:46:22 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:48:32 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:50:41 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:52:53 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = 0.048 -1.551 2.255 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.8 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = 0.184 -1.739 2.768 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.0 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:57:37 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:58:05 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x562157fab6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [107.102, 64.7781, -108.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562157e22730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562157fc2320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x562157faefa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.8093, 126.21, -114.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562157fb4e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5621587bf230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5621587bd5c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [107.102, 64.7781, -108.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562157fb13f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5621592e9450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5621587bbda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.8093, 126.21, -114.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562157fb8360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562159ae3780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.371618063084e-01, 1.797693134862e+308, 4.2144e-02, 4.2143e-02, + 2DIAGNOSTIC, 2, -7.382253399470e-01, 1.797693134862e+308, 4.3365e-02, 1.2209e-03, + 2DIAGNOSTIC, 3, -7.402179249605e-01, 1.797693134862e+308, 4.4633e-02, 1.2681e-03, + 2DIAGNOSTIC, 4, -7.492583580362e-01, 1.797693134862e+308, 4.5950e-02, 1.3170e-03, + 2DIAGNOSTIC, 5, -7.827818282897e-01, 1.797693134862e+308, 4.7303e-02, 1.3530e-03, + 2DIAGNOSTIC, 6, -7.918542241766e-01, 1.797693134862e+308, 4.8636e-02, 1.3330e-03, + 2DIAGNOSTIC, 7, -8.307349678974e-01, 1.797693134862e+308, 5.0525e-02, 1.8890e-03, + 2DIAGNOSTIC, 8, -8.392650453128e-01, 1.797693134862e+308, 5.1903e-02, 1.3781e-03, + 2DIAGNOSTIC, 9, -8.457196435188e-01, 1.797693134862e+308, 5.3842e-02, 1.9388e-03, + 2DIAGNOSTIC, 10, -8.476045901414e-01, 1.127498441910e-02, 6.0496e-02, 6.6538e-03, + 2DIAGNOSTIC, 11, -8.476045880995e-01, 9.867530674871e-03, 6.2204e-02, 1.7080e-03, + 2DIAGNOSTIC, 12, -8.476047825193e-01, 7.860613383450e-03, 6.3887e-02, 1.6832e-03, + 2DIAGNOSTIC, 13, -8.476051112151e-01, 5.527627562263e-03, 6.5557e-02, 1.6701e-03, + 2DIAGNOSTIC, 14, -8.476056668478e-01, 3.263290491975e-03, 6.7052e-02, 1.4951e-03, + 2DIAGNOSTIC, 15, -8.476066058812e-01, 1.810038412769e-03, 6.8524e-02, 1.4720e-03, + 2DIAGNOSTIC, 16, -8.476081922500e-01, 5.597209032746e-04, 7.0007e-02, 1.4830e-03, + 2DIAGNOSTIC, 17, -8.476108704317e-01, 2.073091558565e-04, 7.1450e-02, 1.4429e-03, + 2DIAGNOSTIC, 18, -8.476153868122e-01, 3.870274738219e-05, 7.2968e-02, 1.5180e-03, + 2DIAGNOSTIC, 19, -8.476229886949e-01, 2.352676927046e-06, 7.4524e-02, 1.5559e-03, + 2DIAGNOSTIC, 20, -8.476357433359e-01, 2.634635529158e-06, 7.6021e-02, 1.4970e-03, + 2DIAGNOSTIC, 21, -8.476570288675e-01, 3.144207177390e-06, 7.7525e-02, 1.5039e-03, + 2DIAGNOSTIC, 22, -8.476922324340e-01, 4.009282755429e-06, 7.8985e-02, 1.4601e-03, + 2DIAGNOSTIC, 23, -8.477488909227e-01, 5.407984357490e-06, 8.0469e-02, 1.4839e-03, + 2DIAGNOSTIC, 24, -8.478388217655e-01, 7.600118219139e-06, 8.2057e-02, 1.5879e-03, + 2DIAGNOSTIC, 25, -8.479749738505e-01, 1.089491545868e-05, 8.3993e-02, 1.9360e-03, + 2DIAGNOSTIC, 26, -8.481670146212e-01, 1.556132785431e-05, 8.5996e-02, 2.0030e-03, + 2DIAGNOSTIC, 27, -8.483876568164e-01, 2.133148568181e-05, 8.7845e-02, 1.8489e-03, + 2DIAGNOSTIC, 28, -8.485982742589e-01, 2.738628424841e-05, 8.9761e-02, 1.9162e-03, + 2DIAGNOSTIC, 29, -8.488079727930e-01, 3.308675125170e-05, 9.1733e-02, 1.9720e-03, + 2DIAGNOSTIC, 30, -8.488741657417e-01, 3.625229575468e-05, 9.3248e-02, 1.5149e-03, + 2DIAGNOSTIC, 31, -8.480204380318e-01, 2.668839746375e-05, 9.4697e-02, 1.4491e-03, + 2DIAGNOSTIC, 32, -8.471985192044e-01, 7.157016739180e-06, 9.6149e-02, 1.4520e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.481203359049e-01, 1.797693134862e+308, 1.4113e-01, 4.4978e-02, + 2DIAGNOSTIC, 2, -4.478202495697e-01, 1.797693134862e+308, 1.4352e-01, 2.3892e-03, + 2DIAGNOSTIC, 3, -4.490168465774e-01, 1.797693134862e+308, 1.4596e-01, 2.4459e-03, + 2DIAGNOSTIC, 4, -4.532786084927e-01, 1.797693134862e+308, 1.4829e-01, 2.3291e-03, + 2DIAGNOSTIC, 5, -4.568442709667e-01, 1.797693134862e+308, 1.5050e-01, 2.2058e-03, + 2DIAGNOSTIC, 6, -4.665791241327e-01, 1.797693134862e+308, 1.5267e-01, 2.1780e-03, + 2DIAGNOSTIC, 7, -4.822070700782e-01, 1.797693134862e+308, 1.5536e-01, 2.6820e-03, + 2DIAGNOSTIC, 8, -4.790774930247e-01, 1.797693134862e+308, 1.5740e-01, 2.0421e-03, + 2DIAGNOSTIC, 9, -4.889465612600e-01, 1.797693134862e+308, 1.6030e-01, 2.8968e-03, + 2DIAGNOSTIC, 10, -4.934806300232e-01, 7.161554261710e-03, 1.6253e-01, 2.2330e-03, + 2DIAGNOSTIC, 11, -4.949602442205e-01, 6.831739283489e-03, 1.6478e-01, 2.2490e-03, + 2DIAGNOSTIC, 12, -5.004309405030e-01, 6.201996162843e-03, 1.6699e-01, 2.2130e-03, + 2DIAGNOSTIC, 13, -5.126828280413e-01, 5.725076725023e-03, 1.6923e-01, 2.2390e-03, + 2DIAGNOSTIC, 14, -5.199972345739e-01, 5.283861502033e-03, 1.7149e-01, 2.2612e-03, + 2DIAGNOSTIC, 15, -5.491677175966e-01, 5.684469991204e-03, 1.7407e-01, 2.5799e-03, + 2DIAGNOSTIC, 16, -5.790804909023e-01, 6.897560449808e-03, 1.7632e-01, 2.2540e-03, + 2DIAGNOSTIC, 17, -5.933080826848e-01, 8.303081588287e-03, 1.7889e-01, 2.5680e-03, + 2DIAGNOSTIC, 18, -6.368644188440e-01, 9.991119812848e-03, 1.8209e-01, 3.1979e-03, + 2DIAGNOSTIC, 19, -6.594525594720e-01, 1.144370761953e-02, 1.8566e-01, 3.5729e-03, + 2DIAGNOSTIC, 20, -6.622421470624e-01, 1.185289927865e-02, 1.8929e-01, 3.6302e-03, + 2DIAGNOSTIC, 21, -6.632747865400e-01, 1.119586695665e-02, 1.9171e-01, 2.4199e-03, + 2DIAGNOSTIC, 22, -6.674879543536e-01, 9.813812587516e-03, 1.9481e-01, 3.0990e-03, + 2DIAGNOSTIC, 23, -6.699501781880e-01, 8.002303483764e-03, 1.9718e-01, 2.3699e-03, + 2DIAGNOSTIC, 24, -6.707490453981e-01, 5.793431532004e-03, 1.9945e-01, 2.2650e-03, + 2DIAGNOSTIC, 25, -6.720454648102e-01, 3.891978169318e-03, 2.0180e-01, 2.3479e-03, + 2DIAGNOSTIC, 26, -6.837562615120e-01, 2.634333306565e-03, 2.0535e-01, 3.5532e-03, + 2DIAGNOSTIC, 27, -6.894203175792e-01, 1.594117161788e-03, 2.0827e-01, 2.9249e-03, + 2DIAGNOSTIC, 28, -6.908438374061e-01, 1.293994099188e-03, 2.1085e-01, 2.5771e-03, + 2DIAGNOSTIC, 29, -6.925240255538e-01, 1.319818744518e-03, 2.1316e-01, 2.3100e-03, + 2DIAGNOSTIC, 30, -6.928292978286e-01, 1.271901797876e-03, 2.1573e-01, 2.5661e-03, + 2DIAGNOSTIC, 31, -6.929555946752e-01, 1.122422466448e-03, 2.1849e-01, 2.7609e-03, + 2DIAGNOSTIC, 32, -6.930653969944e-01, 9.423462347480e-04, 2.2121e-01, 2.7230e-03, + 2DIAGNOSTIC, 33, -6.931280936235e-01, 7.257803117393e-04, 2.2394e-01, 2.7299e-03, + 2DIAGNOSTIC, 34, -6.931094036530e-01, 4.693020571749e-04, 2.2632e-01, 2.3842e-03, + 2DIAGNOSTIC, 35, -6.931241767120e-01, 2.003717677451e-04, 2.2866e-01, 2.3401e-03, + 2DIAGNOSTIC, 36, -6.934772149599e-01, 8.922745481531e-05, 2.3140e-01, 2.7308e-03, + 2DIAGNOSTIC, 37, -6.939278879920e-01, 5.528825835711e-05, 2.3653e-01, 5.1332e-03, + 2DIAGNOSTIC, 38, -6.938992941954e-01, 3.507617807466e-05, 2.3932e-01, 2.7952e-03, + 2DIAGNOSTIC, 39, -6.938199537044e-01, 3.234313648032e-05, 2.4239e-01, 3.0620e-03, + 2DIAGNOSTIC, 40, -6.938388158497e-01, 3.068327814418e-05, 2.4474e-01, 2.3561e-03, + 2DIAGNOSTIC, 41, -6.937843278761e-01, 2.696753281873e-05, 2.4702e-01, 2.2759e-03, + 2DIAGNOSTIC, 42, -6.938332719473e-01, 2.263004855909e-05, 2.4933e-01, 2.3081e-03, + 2DIAGNOSTIC, 43, -6.939105545829e-01, 1.801076337340e-05, 2.5173e-01, 2.4052e-03, + 2DIAGNOSTIC, 44, -6.939988583001e-01, 1.283643941650e-05, 2.5410e-01, 2.3730e-03, + 2DIAGNOSTIC, 45, -6.944519628988e-01, 1.154022578767e-05, 2.5706e-01, 2.9550e-03, + 2DIAGNOSTIC, 46, -6.944728554695e-01, 1.279624599072e-05, 2.5934e-01, 2.2810e-03, + 2DIAGNOSTIC, 47, -6.945850381963e-01, 1.842326441905e-05, 2.6194e-01, 2.5971e-03, + 2DIAGNOSTIC, 48, -6.946063578060e-01, 2.207041192208e-05, 2.6539e-01, 3.4502e-03, + 2DIAGNOSTIC, 49, -6.946981267947e-01, 2.360241972995e-05, 2.6763e-01, 2.2469e-03, + 2DIAGNOSTIC, 50, -6.946350368105e-01, 2.242622820186e-05, 2.6990e-01, 2.2690e-03, + 2DIAGNOSTIC, 51, -6.946490993429e-01, 1.887762617264e-05, 2.7217e-01, 2.2652e-03, + 2DIAGNOSTIC, 52, -6.946557641432e-01, 1.426762205447e-05, 2.7452e-01, 2.3539e-03, + 2DIAGNOSTIC, 53, -6.946739658866e-01, 9.378436591784e-06, 2.7753e-01, 3.0031e-03, + 2DIAGNOSTIC, 54, -6.947038508500e-01, 4.743447378684e-06, 2.7996e-01, 2.4319e-03, + 2DIAGNOSTIC, 55, -6.946255560179e-01, 2.999397619583e-06, 2.8254e-01, 2.5792e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.295881024610e-01, 1.797693134862e+308, 3.5222e-01, 6.9688e-02, + 2DIAGNOSTIC, 2, -5.298312839389e-01, 1.797693134862e+308, 3.6435e-01, 1.2130e-02, + 2DIAGNOSTIC, 3, -5.300761735687e-01, 1.797693134862e+308, 3.7551e-01, 1.1154e-02, + 2DIAGNOSTIC, 4, -5.303427879172e-01, 1.797693134862e+308, 3.8569e-01, 1.0180e-02, + 2DIAGNOSTIC, 5, -5.310087282727e-01, 1.797693134862e+308, 3.9715e-01, 1.1466e-02, + 2DIAGNOSTIC, 6, -5.318363970157e-01, 1.797693134862e+308, 4.0864e-01, 1.1485e-02, + 2DIAGNOSTIC, 7, -5.320983854291e-01, 1.797693134862e+308, 4.2156e-01, 1.2920e-02, + 2DIAGNOSTIC, 8, -5.322381938151e-01, 1.797693134862e+308, 4.3383e-01, 1.2266e-02, + 2DIAGNOSTIC, 9, -5.325374597933e-01, 1.797693134862e+308, 4.4423e-01, 1.0402e-02, + 2DIAGNOSTIC, 10, -5.326449089106e-01, 4.255879098932e-04, 4.6101e-01, 1.6787e-02, + 2DIAGNOSTIC, 11, -5.326539364698e-01, 3.542102471295e-04, 4.7421e-01, 1.3193e-02, + 2DIAGNOSTIC, 12, -5.326639357692e-01, 2.747632409383e-04, 4.8578e-01, 1.1570e-02, + 2DIAGNOSTIC, 13, -5.326674691209e-01, 1.936691341860e-04, 4.9740e-01, 1.1622e-02, + 2DIAGNOSTIC, 14, -5.327154080402e-01, 1.184207497645e-04, 5.1033e-01, 1.2929e-02, + 2DIAGNOSTIC, 15, -5.327772495947e-01, 6.775699121091e-05, 5.2204e-01, 1.1716e-02, + 2DIAGNOSTIC, 16, -5.328698291521e-01, 4.806958948839e-05, 5.3260e-01, 1.0557e-02, + 2DIAGNOSTIC, 17, -5.330350491964e-01, 3.988981728947e-05, 5.4962e-01, 1.7020e-02, + 2DIAGNOSTIC, 18, -5.330366353965e-01, 3.300906183612e-05, 5.6141e-01, 1.1789e-02, + 2DIAGNOSTIC, 19, -5.330258314236e-01, 3.205914149104e-05, 5.7211e-01, 1.0697e-02, + 2DIAGNOSTIC, 20, -5.330228794911e-01, 3.120912033674e-05, 5.8307e-01, 1.0958e-02, + 2DIAGNOSTIC, 21, -5.330396811528e-01, 2.829015630353e-05, 5.9331e-01, 1.0242e-02, + 2DIAGNOSTIC, 22, -5.330560481450e-01, 2.372054809096e-05, 6.0478e-01, 1.1475e-02, + 2DIAGNOSTIC, 23, -5.331467225526e-01, 1.965162912578e-05, 6.1763e-01, 1.2852e-02, + 2DIAGNOSTIC, 24, -5.331666938219e-01, 1.572354850808e-05, 6.2941e-01, 1.1778e-02, + 2DIAGNOSTIC, 25, -5.331804697968e-01, 1.237744150930e-05, 6.4256e-01, 1.3146e-02, + 2DIAGNOSTIC, 26, -5.331763568478e-01, 9.981552508607e-06, 6.5432e-01, 1.1763e-02, + 2DIAGNOSTIC, 27, -5.331815568854e-01, 1.030282496108e-05, 6.6452e-01, 1.0196e-02, + 2DIAGNOSTIC, 28, -5.331759880929e-01, 9.643949611143e-06, 6.7591e-01, 1.1391e-02, + 2DIAGNOSTIC, 29, -5.331768259663e-01, 8.043444492269e-06, 6.8578e-01, 9.8729e-03, + 2DIAGNOSTIC, 30, -5.331697598615e-01, 5.730847709981e-06, 6.9569e-01, 9.9080e-03, + 2DIAGNOSTIC, 31, -5.332193902379e-01, 4.287987539854e-06, 7.0952e-01, 1.3833e-02, + 2DIAGNOSTIC, 32, -5.332253928137e-01, 2.938294103520e-06, 7.2109e-01, 1.1569e-02, + 2DIAGNOSTIC, 33, -5.332117368609e-01, 2.730486599427e-06, 7.3237e-01, 1.1279e-02, + 2DIAGNOSTIC, 34, -5.332088752375e-01, 2.650765418315e-06, 7.4217e-01, 9.8028e-03, + 2DIAGNOSTIC, 35, -5.332021314439e-01, 2.520509919189e-06, 7.5204e-01, 9.8698e-03, + 2DIAGNOSTIC, 36, -5.332137035687e-01, 2.338618531494e-06, 7.6408e-01, 1.2034e-02, + 2DIAGNOSTIC, 37, -5.332289842080e-01, 2.314358633498e-06, 7.7587e-01, 1.1798e-02, + 2DIAGNOSTIC, 38, -5.332327457200e-01, 2.134739100271e-06, 7.8723e-01, 1.1354e-02, + 2DIAGNOSTIC, 39, -5.332550892072e-01, 2.175582359147e-06, 7.9847e-01, 1.1240e-02, + 2DIAGNOSTIC, 40, -5.332648507775e-01, 2.096220755126e-06, 8.0981e-01, 1.1340e-02, + 2DIAGNOSTIC, 41, -5.332581640220e-01, 2.448298250579e-06, 8.2161e-01, 1.1799e-02, + 2DIAGNOSTIC, 42, -5.332468135180e-01, 2.563734768694e-06, 8.3297e-01, 1.1363e-02, + 2DIAGNOSTIC, 43, -5.332545569827e-01, 2.432741855761e-06, 8.4456e-01, 1.1591e-02, + 2DIAGNOSTIC, 44, -5.332725353388e-01, 2.325466619768e-06, 8.5617e-01, 1.1608e-02, + 2DIAGNOSTIC, 45, -5.332771430578e-01, 2.033593292795e-06, 8.6610e-01, 9.9308e-03, + 2DIAGNOSTIC, 46, -5.332699080484e-01, 1.681353835242e-06, 8.7616e-01, 1.0056e-02, + 2DIAGNOSTIC, 47, -5.332946350443e-01, 1.715637923862e-06, 8.8871e-01, 1.2553e-02, + 2DIAGNOSTIC, 48, -5.333242871577e-01, 2.003685456709e-06, 8.9863e-01, 9.9189e-03, + 2DIAGNOSTIC, 49, -5.333684881153e-01, 2.859008481081e-06, 9.0864e-01, 1.0009e-02, + 2DIAGNOSTIC, 50, -5.334222743363e-01, 4.141617985984e-06, 9.2255e-01, 1.3914e-02, + 2DIAGNOSTIC, 51, -5.334234255144e-01, 4.981987048094e-06, 9.3658e-01, 1.4027e-02, + 2DIAGNOSTIC, 52, -5.334430364971e-01, 5.465969442949e-06, 9.4810e-01, 1.1522e-02, + 2DIAGNOSTIC, 53, -5.334345793588e-01, 5.448565546257e-06, 9.5856e-01, 1.0463e-02, + 2DIAGNOSTIC, 54, -5.335432624597e-01, 6.213814715508e-06, 9.7033e-01, 1.1771e-02, + 2DIAGNOSTIC, 55, -5.335667704634e-01, 6.654879448464e-06, 9.8317e-01, 1.2832e-02, + 2DIAGNOSTIC, 56, -5.335622244101e-01, 6.389738036506e-06, 9.9346e-01, 1.0294e-02, + 2DIAGNOSTIC, 57, -5.335571003525e-01, 5.780822999169e-06, 1.0063e+00, 1.2869e-02, + 2DIAGNOSTIC, 58, -5.335513961684e-01, 4.906904008884e-06, 1.0186e+00, 1.2292e-02, + 2DIAGNOSTIC, 59, -5.335455624938e-01, 3.962710960009e-06, 1.0301e+00, 1.1448e-02, + 2DIAGNOSTIC, 60, -5.335468431533e-01, 3.204016536501e-06, 1.0406e+00, 1.0512e-02, + 2DIAGNOSTIC, 61, -5.335489707583e-01, 2.249717391219e-06, 1.0521e+00, 1.1529e-02, + 2DIAGNOSTIC, 62, -5.335520439678e-01, 1.371638688803e-06, 1.0632e+00, 1.1077e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.450971274075e-01, 1.797693134862e+308, 1.2307e+00, 1.6752e-01, + Elapsed time (stage 0): 1.2593e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.845833627218e-01, 1.797693134862e+308, 3.8190e-02, 3.8190e-02, + 2DIAGNOSTIC, 2, -9.864723645066e-01, 1.797693134862e+308, 3.9446e-02, 1.2560e-03, + 2DIAGNOSTIC, 3, -9.894922149113e-01, 1.797693134862e+308, 4.0680e-02, 1.2338e-03, + 2DIAGNOSTIC, 4, -9.930005196894e-01, 1.797693134862e+308, 4.2063e-02, 1.3831e-03, + 2DIAGNOSTIC, 5, -1.005020956666e+00, 1.797693134862e+308, 4.4033e-02, 1.9701e-03, + 2DIAGNOSTIC, 6, -1.012739684563e+00, 1.797693134862e+308, 4.6823e-02, 2.7900e-03, + 2DIAGNOSTIC, 7, -1.012849474605e+00, 1.797693134862e+308, 4.8111e-02, 1.2879e-03, + 2DIAGNOSTIC, 8, -1.013241330079e+00, 1.797693134862e+308, 4.9420e-02, 1.3092e-03, + 2DIAGNOSTIC, 9, -1.013885339903e+00, 1.797693134862e+308, 5.0717e-02, 1.2970e-03, + 2DIAGNOSTIC, 10, -1.014915189925e+00, 2.313333623765e-03, 5.2241e-02, 1.5240e-03, + 2DIAGNOSTIC, 11, -1.016464749854e+00, 1.823106004331e-03, 5.3756e-02, 1.5149e-03, + 2DIAGNOSTIC, 12, -1.018695156262e+00, 1.351630325819e-03, 5.5264e-02, 1.5080e-03, + 2DIAGNOSTIC, 13, -1.021319179716e+00, 9.572381721791e-04, 5.6817e-02, 1.5531e-03, + 2DIAGNOSTIC, 14, -1.021566928310e+00, 6.031906847193e-04, 5.8530e-02, 1.7130e-03, + 2DIAGNOSTIC, 15, -1.025006775699e+00, 5.291795133020e-04, 6.0231e-02, 1.7009e-03, + 2DIAGNOSTIC, 16, -1.029077301331e+00, 6.221458852379e-04, 6.2196e-02, 1.9650e-03, + 2DIAGNOSTIC, 17, -1.029848163385e+00, 6.596514811972e-04, 6.3664e-02, 1.4679e-03, + 2DIAGNOSTIC, 18, -1.028966498118e+00, 6.253650224429e-04, 6.5152e-02, 1.4880e-03, + 2DIAGNOSTIC, 19, -1.035307590517e+00, 6.414132176129e-04, 6.7081e-02, 1.9290e-03, + 2DIAGNOSTIC, 20, -1.039385054886e+00, 6.646557391404e-04, 6.8540e-02, 1.4589e-03, + 2DIAGNOSTIC, 21, -1.052725439563e+00, 8.195772841449e-04, 7.0242e-02, 1.7018e-03, + 2DIAGNOSTIC, 22, -1.056775744358e+00, 9.597761661501e-04, 7.2917e-02, 2.6748e-03, + 2DIAGNOSTIC, 23, -1.057248001776e+00, 1.037748166273e-03, 7.4395e-02, 1.4789e-03, + 2DIAGNOSTIC, 24, -1.057527684808e+00, 1.019222749468e-03, 7.5911e-02, 1.5159e-03, + 2DIAGNOSTIC, 25, -1.059154359486e+00, 9.607957007002e-04, 7.7407e-02, 1.4961e-03, + 2DIAGNOSTIC, 26, -1.059354927301e+00, 8.601142371983e-04, 7.9314e-02, 1.9069e-03, + 2DIAGNOSTIC, 27, -1.058482416771e+00, 6.860006948803e-04, 8.1054e-02, 1.7400e-03, + 2DIAGNOSTIC, 28, -1.058838600003e+00, 4.561224760818e-04, 8.2520e-02, 1.4660e-03, + 2DIAGNOSTIC, 29, -1.058132496993e+00, 2.541450114119e-04, 8.4003e-02, 1.4832e-03, + 2DIAGNOSTIC, 30, -1.058773834816e+00, 8.238251943438e-05, 8.5494e-02, 1.4901e-03, + 2DIAGNOSTIC, 31, -1.057975546803e+00, 2.478573975936e-05, 8.6948e-02, 1.4541e-03, + 2DIAGNOSTIC, 32, -1.058494100424e+00, 8.417519212753e-06, 8.8413e-02, 1.4651e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.267722439633e-01, 1.797693134862e+308, 1.3328e-01, 4.4863e-02, + 2DIAGNOSTIC, 2, -7.270017541581e-01, 1.797693134862e+308, 1.3599e-01, 2.7120e-03, + 2DIAGNOSTIC, 3, -7.286061881108e-01, 1.797693134862e+308, 1.3882e-01, 2.8319e-03, + 2DIAGNOSTIC, 4, -7.329941805390e-01, 1.797693134862e+308, 1.4127e-01, 2.4531e-03, + 2DIAGNOSTIC, 5, -7.374807801838e-01, 1.797693134862e+308, 1.4360e-01, 2.3232e-03, + 2DIAGNOSTIC, 6, -7.404872155940e-01, 1.797693134862e+308, 1.4578e-01, 2.1832e-03, + 2DIAGNOSTIC, 7, -7.451845386063e-01, 1.797693134862e+308, 1.4817e-01, 2.3880e-03, + 2DIAGNOSTIC, 8, -7.537701368443e-01, 1.797693134862e+308, 1.5321e-01, 5.0440e-03, + 2DIAGNOSTIC, 9, -7.538744928576e-01, 1.797693134862e+308, 1.5527e-01, 2.0571e-03, + 2DIAGNOSTIC, 10, -7.540606631348e-01, 2.869056506563e-03, 1.5799e-01, 2.7180e-03, + 2DIAGNOSTIC, 11, -7.541318944025e-01, 2.526597347727e-03, 1.6038e-01, 2.3921e-03, + 2DIAGNOSTIC, 12, -7.543829428907e-01, 2.030132599080e-03, 1.6309e-01, 2.7101e-03, + 2DIAGNOSTIC, 13, -7.546641905967e-01, 1.478215418152e-03, 1.6547e-01, 2.3811e-03, + 2DIAGNOSTIC, 14, -7.549316203453e-01, 9.978569439062e-04, 1.6789e-01, 2.4159e-03, + 2DIAGNOSTIC, 15, -7.555828537712e-01, 6.249701500904e-04, 1.7026e-01, 2.3732e-03, + 2DIAGNOSTIC, 16, -7.564113982751e-01, 3.325689186133e-04, 1.7262e-01, 2.3608e-03, + 2DIAGNOSTIC, 17, -7.578532478611e-01, 1.763365932621e-04, 1.7498e-01, 2.3649e-03, + 2DIAGNOSTIC, 18, -7.596978523144e-01, 2.414749693711e-04, 1.7764e-01, 2.6541e-03, + 2DIAGNOSTIC, 19, -7.603218789103e-01, 2.914078055402e-04, 1.8000e-01, 2.3570e-03, + 2DIAGNOSTIC, 20, -7.605613131359e-01, 3.177933706973e-04, 1.8240e-01, 2.4090e-03, + 2DIAGNOSTIC, 21, -7.609613013449e-01, 3.208719612958e-04, 1.8510e-01, 2.6910e-03, + 2DIAGNOSTIC, 22, -7.612806677426e-01, 3.032317514396e-04, 1.8781e-01, 2.7101e-03, + 2DIAGNOSTIC, 23, -7.612708688520e-01, 2.629839714712e-04, 1.9053e-01, 2.7280e-03, + 2DIAGNOSTIC, 24, -7.616815643306e-01, 2.124390598865e-04, 1.9570e-01, 5.1651e-03, + 2DIAGNOSTIC, 25, -7.619234092737e-01, 1.598396530711e-04, 1.9908e-01, 3.3851e-03, + 2DIAGNOSTIC, 26, -7.620085174638e-01, 1.094394421371e-04, 2.0249e-01, 3.4020e-03, + 2DIAGNOSTIC, 27, -7.620668756978e-01, 7.306414059381e-05, 2.0538e-01, 2.8930e-03, + 2DIAGNOSTIC, 28, -7.620980839296e-01, 5.775266195210e-05, 2.0820e-01, 2.8250e-03, + 2DIAGNOSTIC, 29, -7.620456587992e-01, 4.556654906997e-05, 2.1065e-01, 2.4440e-03, + 2DIAGNOSTIC, 30, -7.620109226473e-01, 3.243973209766e-05, 2.1324e-01, 2.5921e-03, + 2DIAGNOSTIC, 31, -7.620826761072e-01, 2.289202921257e-05, 2.1632e-01, 3.0770e-03, + 2DIAGNOSTIC, 32, -7.621704790780e-01, 1.672965101433e-05, 2.1945e-01, 3.1309e-03, + 2DIAGNOSTIC, 33, -7.620920921696e-01, 8.329443506289e-06, 2.2289e-01, 3.4380e-03, + 2DIAGNOSTIC, 34, -7.621197152365e-01, 4.594821966297e-06, 2.2630e-01, 3.4182e-03, + 2DIAGNOSTIC, 35, -7.621467672803e-01, 3.613419562731e-06, 2.2941e-01, 3.1111e-03, + 2DIAGNOSTIC, 36, -7.621276889860e-01, 3.066612741454e-06, 2.3225e-01, 2.8350e-03, + 2DIAGNOSTIC, 37, -7.621571598771e-01, 3.214147164261e-06, 2.3506e-01, 2.8059e-03, + 2DIAGNOSTIC, 38, -7.624236911441e-01, 6.105374786038e-06, 2.3837e-01, 3.3140e-03, + 2DIAGNOSTIC, 39, -7.624702722144e-01, 8.245266902841e-06, 2.4088e-01, 2.5101e-03, + 2DIAGNOSTIC, 40, -7.625149928357e-01, 9.659572159669e-06, 2.4367e-01, 2.7869e-03, + 2DIAGNOSTIC, 41, -7.625812627293e-01, 1.143241790280e-05, 2.4677e-01, 3.1059e-03, + 2DIAGNOSTIC, 42, -7.625821254637e-01, 1.290644973291e-05, 2.4993e-01, 3.1610e-03, + 2DIAGNOSTIC, 43, -7.625391928967e-01, 1.205499451611e-05, 2.5268e-01, 2.7442e-03, + 2DIAGNOSTIC, 44, -7.624918289951e-01, 9.991736960056e-06, 2.5507e-01, 2.3940e-03, + 2DIAGNOSTIC, 45, -7.624648151724e-01, 7.176719308419e-06, 2.5777e-01, 2.7020e-03, + 2DIAGNOSTIC, 46, -7.624324305331e-01, 3.457200191005e-06, 2.6081e-01, 3.0370e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.762419655360e-01, 1.797693134862e+308, 3.2731e-01, 6.6503e-02, + 2DIAGNOSTIC, 2, -5.767502693116e-01, 1.797693134862e+308, 3.3851e-01, 1.1198e-02, + 2DIAGNOSTIC, 3, -5.774327882373e-01, 1.797693134862e+308, 3.4976e-01, 1.1249e-02, + 2DIAGNOSTIC, 4, -5.782954686333e-01, 1.797693134862e+308, 3.6104e-01, 1.1278e-02, + 2DIAGNOSTIC, 5, -5.791821603349e-01, 1.797693134862e+308, 3.7231e-01, 1.1269e-02, + 2DIAGNOSTIC, 6, -5.803443122049e-01, 1.797693134862e+308, 3.8338e-01, 1.1073e-02, + 2DIAGNOSTIC, 7, -5.819174551858e-01, 1.797693134862e+308, 3.9658e-01, 1.3202e-02, + 2DIAGNOSTIC, 8, -5.840064454464e-01, 1.797693134862e+308, 4.0889e-01, 1.2309e-02, + 2DIAGNOSTIC, 9, -5.848120297722e-01, 1.797693134862e+308, 4.2113e-01, 1.2234e-02, + 2DIAGNOSTIC, 10, -5.865595067244e-01, 1.171185788828e-03, 4.3406e-01, 1.2929e-02, + 2DIAGNOSTIC, 11, -5.874123062976e-01, 1.146433013801e-03, 4.5127e-01, 1.7217e-02, + 2DIAGNOSTIC, 12, -5.875159990935e-01, 1.047343060039e-03, 4.6396e-01, 1.2689e-02, + 2DIAGNOSTIC, 13, -5.877183880398e-01, 9.024630998574e-04, 4.7574e-01, 1.1782e-02, + 2DIAGNOSTIC, 14, -5.879509827925e-01, 7.347657493040e-04, 4.8934e-01, 1.3602e-02, + 2DIAGNOSTIC, 15, -5.886311094430e-01, 5.730696365899e-04, 5.0229e-01, 1.2943e-02, + 2DIAGNOSTIC, 16, -5.888718385491e-01, 4.208899468780e-04, 5.1679e-01, 1.4503e-02, + 2DIAGNOSTIC, 17, -5.890427622028e-01, 2.975421838158e-04, 5.2819e-01, 1.1398e-02, + 2DIAGNOSTIC, 18, -5.892837641443e-01, 2.241516664079e-04, 5.4163e-01, 1.3438e-02, + 2DIAGNOSTIC, 19, -5.895824653726e-01, 1.650375923577e-04, 5.5493e-01, 1.3300e-02, + 2DIAGNOSTIC, 20, -5.898160449051e-01, 1.439942452508e-04, 5.6814e-01, 1.3208e-02, + 2DIAGNOSTIC, 21, -5.898448918194e-01, 1.320427844432e-04, 5.8396e-01, 1.5828e-02, + 2DIAGNOSTIC, 22, -5.898413952459e-01, 1.114443161467e-04, 5.9567e-01, 1.1704e-02, + 2DIAGNOSTIC, 23, -5.898413818073e-01, 8.671890318538e-05, 6.0924e-01, 1.3577e-02, + 2DIAGNOSTIC, 24, -5.898617486402e-01, 6.078152236173e-05, 6.2234e-01, 1.3094e-02, + 2DIAGNOSTIC, 25, -5.898723542511e-01, 4.463194652098e-05, 6.3376e-01, 1.1423e-02, + 2DIAGNOSTIC, 26, -5.898703258840e-01, 3.013887337425e-05, 6.4691e-01, 1.3146e-02, + 2DIAGNOSTIC, 27, -5.898974469976e-01, 1.757963411111e-05, 6.5966e-01, 1.2748e-02, + 2DIAGNOSTIC, 28, -5.898982500038e-01, 8.461852517030e-06, 6.7245e-01, 1.2797e-02, + 2DIAGNOSTIC, 29, -5.899028488636e-01, 4.247392388926e-06, 7.1106e-01, 3.8604e-02, + 2DIAGNOSTIC, 30, -5.899028488634e-01, 3.779582590936e-06, 7.4032e-01, 2.9262e-02, + 2DIAGNOSTIC, 31, -5.899028488634e-01, 3.542498282112e-06, 7.5390e-01, 1.3583e-02, + 2DIAGNOSTIC, 32, -5.899028488634e-01, 3.030163109159e-06, 7.6801e-01, 1.4105e-02, + 2DIAGNOSTIC, 33, -5.899028488634e-01, 2.347162650858e-06, 7.8506e-01, 1.7051e-02, + 2DIAGNOSTIC, 34, -5.899028488634e-01, 1.864385442758e-06, 7.9843e-01, 1.3378e-02, + 2DIAGNOSTIC, 35, -5.899028488634e-01, 1.473598339831e-06, 8.1350e-01, 1.5068e-02, + 2DIAGNOSTIC, 36, -5.899028488634e-01, 1.014776546480e-06, 8.2625e-01, 1.2746e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.904336785157e-01, 1.797693134862e+308, 1.0069e+00, 1.8061e-01, + Elapsed time (stage 1): 1.0307e+00 + + +Total elapsed time: 2.2912e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:58:09 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 28 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 62 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 85.93% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 85.93% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[14688 8315 18649 367 7629 0 216 0 2224 558 371 296 + 0 402 0 1084 4131 1322 1769 305 577 0 173 0 + 0 176 0 0] +[195155 46121 23800 6002 4538 1332 2227 2532 2411 2094 + 1806 3142 1551 1625 1042 913 919 969 359 180 + 458 1170 158 172 200 271 0 0] +[ 0 10833 0 0 3222 680 0 0 6745 26080 0 10819 + 0 0 4590 0 0 0 5645 15393 0 10090 1044 3413 + 0 0 0 0] +[ 3250 226 6543 0 6091 0 1174 1752 169 129941 + 0 367 846 272 139735 3462 0 2240 313 1108 + 972 262 405 325 2551 3399 0 2067] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:05:57 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:06:04 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:09:52 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:09:52 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:09:52 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:10:02 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:10:05 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC007 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:10:17 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:10:41 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:12:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:12:28 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:13:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:13:45 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x562cae11dd20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [75.2585, 126.66, -114.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562cadf94730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff572642010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x562cae121020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562cae1270c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff56ef83010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x562cae137840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [75.2585, 126.66, -114.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562cae123890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff56a2af010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x562cae13b3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562cae12a130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7ff566bf0010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.567032524783e-01, 1.797693134862e+308, 2.3505e-01, 2.3505e-01, + 2DIAGNOSTIC, 2, -4.577963323436e-01, 1.797693134862e+308, 2.3625e-01, 1.1930e-03, + 2DIAGNOSTIC, 3, -4.604083287192e-01, 1.797693134862e+308, 2.3741e-01, 1.1671e-03, + 2DIAGNOSTIC, 4, -4.660779907767e-01, 1.797693134862e+308, 2.3858e-01, 1.1661e-03, + 2DIAGNOSTIC, 5, -4.741742915104e-01, 1.797693134862e+308, 2.3985e-01, 1.2760e-03, + 2DIAGNOSTIC, 6, -4.815729797478e-01, 1.797693134862e+308, 2.4103e-01, 1.1721e-03, + 2DIAGNOSTIC, 7, -4.826237827113e-01, 1.797693134862e+308, 2.4218e-01, 1.1520e-03, + 2DIAGNOSTIC, 8, -4.936053015759e-01, 1.797693134862e+308, 2.4364e-01, 1.4572e-03, + 2DIAGNOSTIC, 9, -5.100368825387e-01, 1.797693134862e+308, 2.4539e-01, 1.7581e-03, + 2DIAGNOSTIC, 10, -5.116468156185e-01, 7.877225549563e-03, 2.4797e-01, 2.5749e-03, + 2DIAGNOSTIC, 11, -5.118459872704e-01, 7.443440441890e-03, 2.4974e-01, 1.7679e-03, + 2DIAGNOSTIC, 12, -5.122279402314e-01, 6.509475731255e-03, 2.5149e-01, 1.7490e-03, + 2DIAGNOSTIC, 13, -5.132553286806e-01, 5.296228163635e-03, 2.5324e-01, 1.7512e-03, + 2DIAGNOSTIC, 14, -5.145855624091e-01, 4.056194489686e-03, 2.5477e-01, 1.5349e-03, + 2DIAGNOSTIC, 15, -5.156295655325e-01, 2.968205082142e-03, 2.5655e-01, 1.7791e-03, + 2DIAGNOSTIC, 16, -5.190761151681e-01, 2.154903274757e-03, 2.5829e-01, 1.7371e-03, + 2DIAGNOSTIC, 17, -5.342383552566e-01, 1.784229469868e-03, 2.5980e-01, 1.5140e-03, + 2DIAGNOSTIC, 18, -5.497689067844e-01, 2.105222977680e-03, 2.6145e-01, 1.6482e-03, + 2DIAGNOSTIC, 19, -5.638447284486e-01, 3.093764813977e-03, 2.6380e-01, 2.3520e-03, + 2DIAGNOSTIC, 20, -5.661082516892e-01, 3.794863600504e-03, 2.6580e-01, 1.9999e-03, + 2DIAGNOSTIC, 21, -5.795630533970e-01, 4.435540404739e-03, 2.6857e-01, 2.7690e-03, + 2DIAGNOSTIC, 22, -5.811798696139e-01, 4.637269850198e-03, 2.7045e-01, 1.8830e-03, + 2DIAGNOSTIC, 23, -5.834893579753e-01, 4.462733299243e-03, 2.7242e-01, 1.9612e-03, + 2DIAGNOSTIC, 24, -5.829006573538e-01, 3.908780952421e-03, 2.7506e-01, 2.6441e-03, + 2DIAGNOSTIC, 25, -5.840122254932e-01, 3.092087933423e-03, 2.7695e-01, 1.8911e-03, + 2DIAGNOSTIC, 26, -5.866158945872e-01, 2.176916700046e-03, 2.7884e-01, 1.8871e-03, + 2DIAGNOSTIC, 27, -5.862808203249e-01, 1.422755910692e-03, 2.8046e-01, 1.6232e-03, + 2DIAGNOSTIC, 28, -5.866592403150e-01, 8.984542834159e-04, 2.8209e-01, 1.6301e-03, + 2DIAGNOSTIC, 29, -5.869910224492e-01, 5.992662276269e-04, 2.8396e-01, 1.8659e-03, + 2DIAGNOSTIC, 30, -5.872157285286e-01, 3.036140434965e-04, 2.8557e-01, 1.6119e-03, + 2DIAGNOSTIC, 31, -5.872537950660e-01, 2.312417396057e-04, 2.8719e-01, 1.6248e-03, + 2DIAGNOSTIC, 32, -5.893290337674e-01, 2.024926554652e-04, 2.8911e-01, 1.9190e-03, + 2DIAGNOSTIC, 33, -5.898544497360e-01, 2.022906332561e-04, 2.9123e-01, 2.1191e-03, + 2DIAGNOSTIC, 34, -5.896600049162e-01, 1.708392952860e-04, 2.9309e-01, 1.8539e-03, + 2DIAGNOSTIC, 35, -5.915637279682e-01, 1.701365477808e-04, 2.9490e-01, 1.8191e-03, + 2DIAGNOSTIC, 36, -5.922521166479e-01, 2.009053926415e-04, 2.9677e-01, 1.8671e-03, + 2DIAGNOSTIC, 37, -5.927751270620e-01, 2.129638913288e-04, 2.9941e-01, 2.6350e-03, + 2DIAGNOSTIC, 38, -5.934478569444e-01, 2.186658065644e-04, 3.0127e-01, 1.8640e-03, + 2DIAGNOSTIC, 39, -5.932699110735e-01, 2.056737598410e-04, 3.0293e-01, 1.6570e-03, + 2DIAGNOSTIC, 40, -5.930304818182e-01, 1.739736559082e-04, 3.0455e-01, 1.6210e-03, + 2DIAGNOSTIC, 41, -5.927307474803e-01, 1.233739289348e-04, 3.0620e-01, 1.6470e-03, + 2DIAGNOSTIC, 42, -5.933251778775e-01, 9.666300732935e-05, 3.0787e-01, 1.6701e-03, + 2DIAGNOSTIC, 43, -5.945319836468e-01, 8.301284658591e-05, 3.0998e-01, 2.1131e-03, + 2DIAGNOSTIC, 44, -5.942846056132e-01, 5.620085207770e-05, 3.1163e-01, 1.6501e-03, + 2DIAGNOSTIC, 45, -5.959157539091e-01, 6.624783277807e-05, 3.1350e-01, 1.8761e-03, + 2DIAGNOSTIC, 46, -5.957932578577e-01, 7.549318485483e-05, 3.1517e-01, 1.6680e-03, + 2DIAGNOSTIC, 47, -5.976860403294e-01, 1.033399307649e-04, 3.1680e-01, 1.6301e-03, + 2DIAGNOSTIC, 48, -5.992951532159e-01, 1.439126707194e-04, 3.1948e-01, 2.6751e-03, + 2DIAGNOSTIC, 49, -6.009934810776e-01, 1.846689359691e-04, 3.2137e-01, 1.8921e-03, + 2DIAGNOSTIC, 50, -6.017907293979e-01, 2.118630298456e-04, 3.2350e-01, 2.1300e-03, + 2DIAGNOSTIC, 51, -6.016600943122e-01, 2.134453839234e-04, 3.2536e-01, 1.8580e-03, + 2DIAGNOSTIC, 52, -6.019367514830e-01, 2.030361957264e-04, 3.2697e-01, 1.6160e-03, + 2DIAGNOSTIC, 53, -6.014356823095e-01, 1.803118896924e-04, 3.2861e-01, 1.6379e-03, + 2DIAGNOSTIC, 54, -6.023405151243e-01, 1.470729797036e-04, 3.3051e-01, 1.8969e-03, + 2DIAGNOSTIC, 55, -6.036652670986e-01, 1.283871934107e-04, 3.3212e-01, 1.6119e-03, + 2DIAGNOSTIC, 56, -6.057957554026e-01, 1.159091215058e-04, 3.3374e-01, 1.6210e-03, + 2DIAGNOSTIC, 57, -6.066232746657e-01, 1.165634291067e-04, 3.3637e-01, 2.6300e-03, + 2DIAGNOSTIC, 58, -6.085039662888e-01, 1.363128237511e-04, 3.3825e-01, 1.8759e-03, + 2DIAGNOSTIC, 59, -6.092419294297e-01, 1.627167724122e-04, 3.3986e-01, 1.6129e-03, + 2DIAGNOSTIC, 60, -6.097129546249e-01, 1.830702550650e-04, 3.4147e-01, 1.6119e-03, + 2DIAGNOSTIC, 61, -6.099600436326e-01, 1.859853674924e-04, 3.4359e-01, 2.1150e-03, + 2DIAGNOSTIC, 62, -6.101753498749e-01, 1.751913252260e-04, 3.4548e-01, 1.8890e-03, + 2DIAGNOSTIC, 63, -6.103257187416e-01, 1.451169308319e-04, 3.4735e-01, 1.8752e-03, + 2DIAGNOSTIC, 64, -6.113959830165e-01, 1.174662656699e-04, 3.4921e-01, 1.8570e-03, + 2DIAGNOSTIC, 65, -6.119522751808e-01, 9.351882869485e-05, 3.5111e-01, 1.9002e-03, + 2DIAGNOSTIC, 66, -6.122524650311e-01, 7.983599138320e-05, 3.5278e-01, 1.6742e-03, + 2DIAGNOSTIC, 67, -6.124936726478e-01, 6.671951518959e-05, 3.5468e-01, 1.8930e-03, + 2DIAGNOSTIC, 68, -6.135000178322e-01, 6.871478828025e-05, 3.5654e-01, 1.8661e-03, + 2DIAGNOSTIC, 69, -6.130754959082e-01, 6.599135630212e-05, 3.5881e-01, 2.2690e-03, + 2DIAGNOSTIC, 70, -6.145934855070e-01, 7.125921952093e-05, 3.6102e-01, 2.2130e-03, + 2DIAGNOSTIC, 71, -6.150981764855e-01, 7.462133958187e-05, 3.6353e-01, 2.5070e-03, + 2DIAGNOSTIC, 72, -6.168832938582e-01, 8.456671807188e-05, 3.6606e-01, 2.5251e-03, + 2DIAGNOSTIC, 73, -6.167858257136e-01, 8.609655058918e-05, 3.6887e-01, 2.8100e-03, + 2DIAGNOSTIC, 74, -6.184113480966e-01, 9.751599771438e-05, 3.7127e-01, 2.4018e-03, + 2DIAGNOSTIC, 75, -6.183827509906e-01, 1.025096423510e-04, 3.7390e-01, 2.6350e-03, + 2DIAGNOSTIC, 76, -6.182187468699e-01, 9.838206438073e-05, 3.7540e-01, 1.4989e-03, + 2DIAGNOSTIC, 77, -6.179651995224e-01, 8.478122048630e-05, 3.7700e-01, 1.5969e-03, + 2DIAGNOSTIC, 78, -6.194255184809e-01, 7.922345432213e-05, 3.7874e-01, 1.7400e-03, + 2DIAGNOSTIC, 79, -6.199432966128e-01, 6.627983393038e-05, 3.8017e-01, 1.4329e-03, + 2DIAGNOSTIC, 80, -6.217575838720e-01, 6.783305638567e-05, 3.8188e-01, 1.7099e-03, + 2DIAGNOSTIC, 81, -6.251607490796e-01, 8.630052090736e-05, 3.8443e-01, 2.5470e-03, + 2DIAGNOSTIC, 82, -6.254878497121e-01, 1.083757162709e-04, 3.8586e-01, 1.4269e-03, + 2DIAGNOSTIC, 83, -6.248166682383e-01, 1.148257587424e-04, 3.8734e-01, 1.4889e-03, + 2DIAGNOSTIC, 84, -6.245928263488e-01, 1.185529987506e-04, 3.8897e-01, 1.6251e-03, + 2DIAGNOSTIC, 85, -6.250066823250e-01, 1.129022262770e-04, 3.9062e-01, 1.6530e-03, + 2DIAGNOSTIC, 86, -6.249943415176e-01, 9.519482593419e-05, 3.9231e-01, 1.6859e-03, + 2DIAGNOSTIC, 87, -6.276124237382e-01, 8.194420941210e-05, 3.9377e-01, 1.4620e-03, + 2DIAGNOSTIC, 88, -6.428557516412e-01, 1.538810284610e-04, 3.9527e-01, 1.5001e-03, + 2DIAGNOSTIC, 89, -6.590287811853e-01, 2.984001056014e-04, 4.0073e-01, 5.4569e-03, + 2DIAGNOSTIC, 90, -6.590279025938e-01, 4.184452409862e-04, 4.0224e-01, 1.5109e-03, + 2DIAGNOSTIC, 91, -6.590289004734e-01, 5.155224146638e-04, 4.0367e-01, 1.4291e-03, + 2DIAGNOSTIC, 92, -6.590305886095e-01, 5.631662914421e-04, 4.0502e-01, 1.3480e-03, + 2DIAGNOSTIC, 93, -6.590334433215e-01, 5.501373911441e-04, 4.0638e-01, 1.3599e-03, + 2DIAGNOSTIC, 94, -6.590382709011e-01, 4.816164479316e-04, 4.0781e-01, 1.4369e-03, + 2DIAGNOSTIC, 95, -6.590464345673e-01, 3.714654851741e-04, 4.0917e-01, 1.3540e-03, + 2DIAGNOSTIC, 96, -6.590602409374e-01, 2.298928378532e-04, 4.1065e-01, 1.4830e-03, + 2DIAGNOSTIC, 97, -6.590835969487e-01, 8.133091375041e-05, 4.1213e-01, 1.4830e-03, + 2DIAGNOSTIC, 98, -6.591231071490e-01, 1.214587311997e-06, 4.1366e-01, 1.5249e-03, + 2DIAGNOSTIC, 99, -6.591901023342e-01, 1.796102141577e-06, 4.1505e-01, 1.3969e-03, + 2DIAGNOSTIC, 100, -6.593040739912e-01, 2.763526198992e-06, 4.1644e-01, 1.3859e-03, + 2DIAGNOSTIC, 101, -6.595005283240e-01, 4.405611304424e-06, 4.1820e-01, 1.7641e-03, + 2DIAGNOSTIC, 102, -6.598433922090e-01, 7.223063281913e-06, 4.1996e-01, 1.7540e-03, + 2DIAGNOSTIC, 103, -6.604801337248e-01, 1.226034265061e-05, 4.2167e-01, 1.7102e-03, + 2DIAGNOSTIC, 104, -6.623349616562e-01, 2.453941834714e-05, 4.2337e-01, 1.7030e-03, + 2DIAGNOSTIC, 105, -6.658782002347e-01, 5.019410908171e-05, 4.2511e-01, 1.7381e-03, + 2DIAGNOSTIC, 106, -6.732774217530e-01, 1.035425914501e-04, 4.2673e-01, 1.6191e-03, + 2DIAGNOSTIC, 107, -6.776577301732e-01, 1.647429313135e-04, 4.2823e-01, 1.4989e-03, + 2DIAGNOSTIC, 108, -6.821003111359e-01, 2.285186889282e-04, 4.3001e-01, 1.7829e-03, + 2DIAGNOSTIC, 109, -6.885952161578e-01, 2.974954057567e-04, 4.3228e-01, 2.2681e-03, + 2DIAGNOSTIC, 110, -6.932489799249e-01, 3.561941117885e-04, 4.3409e-01, 1.8070e-03, + 2DIAGNOSTIC, 111, -7.017596237115e-01, 4.159056624828e-04, 4.3566e-01, 1.5700e-03, + 2DIAGNOSTIC, 112, -7.045509170561e-01, 4.467927808095e-04, 4.3735e-01, 1.6940e-03, + 2DIAGNOSTIC, 113, -7.068118049877e-01, 4.463169567171e-04, 4.3884e-01, 1.4920e-03, + 2DIAGNOSTIC, 114, -7.084341527633e-01, 4.171571725409e-04, 4.4035e-01, 1.5099e-03, + 2DIAGNOSTIC, 115, -7.125269655679e-01, 3.787046261476e-04, 4.4224e-01, 1.8849e-03, + 2DIAGNOSTIC, 116, -7.216882747745e-01, 3.707144000560e-04, 4.4365e-01, 1.4088e-03, + 2DIAGNOSTIC, 117, -7.253514113075e-01, 3.583032852903e-04, 4.4543e-01, 1.7891e-03, + 2DIAGNOSTIC, 118, -7.283066892266e-01, 3.409659846328e-04, 4.4739e-01, 1.9600e-03, + 2DIAGNOSTIC, 119, -7.292458739440e-01, 3.205123582086e-04, 4.4882e-01, 1.4281e-03, + 2DIAGNOSTIC, 120, -7.378934975887e-01, 3.203763556953e-04, 4.5031e-01, 1.4889e-03, + 2DIAGNOSTIC, 121, -7.610075117910e-01, 4.094739557300e-04, 4.5263e-01, 2.3150e-03, + 2DIAGNOSTIC, 122, -7.646170447397e-01, 4.791335030678e-04, 4.5404e-01, 1.4179e-03, + 2DIAGNOSTIC, 123, -7.664453732928e-01, 5.179562686151e-04, 4.5545e-01, 1.4021e-03, + 2DIAGNOSTIC, 124, -7.680825296768e-01, 5.193922053895e-04, 4.5704e-01, 1.5910e-03, + 2DIAGNOSTIC, 125, -7.696528434576e-01, 4.900936810140e-04, 4.5872e-01, 1.6851e-03, + 2DIAGNOSTIC, 126, -7.712089349587e-01, 4.514089644501e-04, 4.6033e-01, 1.6072e-03, + 2DIAGNOSTIC, 127, -7.730233438447e-01, 3.893383870580e-04, 4.6194e-01, 1.6122e-03, + 2DIAGNOSTIC, 128, -7.726893906661e-01, 3.016361987994e-04, 4.6340e-01, 1.4570e-03, + 2DIAGNOSTIC, 129, -7.726785805431e-01, 1.901187298411e-04, 4.6484e-01, 1.4431e-03, + 2DIAGNOSTIC, 130, -7.775035464593e-01, 1.076718135324e-04, 4.6653e-01, 1.6859e-03, + 2DIAGNOSTIC, 131, -7.789899687662e-01, 1.013799085728e-04, 4.6838e-01, 1.8542e-03, + 2DIAGNOSTIC, 132, -7.802137853766e-01, 1.020196007641e-04, 4.7006e-01, 1.6799e-03, + 2DIAGNOSTIC, 133, -7.850520826083e-01, 1.157989810525e-04, 4.7170e-01, 1.6391e-03, + 2DIAGNOSTIC, 134, -7.894263462252e-01, 1.381193211772e-04, 4.7450e-01, 2.8000e-03, + 2DIAGNOSTIC, 135, -7.894541237591e-01, 1.514911697980e-04, 4.7594e-01, 1.4431e-03, + 2DIAGNOSTIC, 136, -7.898473889167e-01, 1.565379414032e-04, 4.7738e-01, 1.4341e-03, + 2DIAGNOSTIC, 137, -7.901836656513e-01, 1.537826240935e-04, 4.7883e-01, 1.4501e-03, + 2DIAGNOSTIC, 138, -7.897307341618e-01, 1.335502718620e-04, 4.8022e-01, 1.3950e-03, + 2DIAGNOSTIC, 139, -7.899546662832e-01, 1.009063079075e-04, 4.8179e-01, 1.5640e-03, + 2DIAGNOSTIC, 140, -7.903350374353e-01, 7.587722962263e-05, 4.8331e-01, 1.5240e-03, + 2DIAGNOSTIC, 141, -7.902476893306e-01, 4.863770509386e-05, 4.8481e-01, 1.4958e-03, + 2DIAGNOSTIC, 142, -7.923802334133e-01, 2.751432399796e-05, 4.8634e-01, 1.5299e-03, + 2DIAGNOSTIC, 143, -7.943919432586e-01, 2.499568818825e-05, 4.8863e-01, 2.2900e-03, + 2DIAGNOSTIC, 144, -7.951144803983e-01, 3.582805472729e-05, 4.9037e-01, 1.7438e-03, + 2DIAGNOSTIC, 145, -7.953816763395e-01, 4.398387067844e-05, 4.9190e-01, 1.5268e-03, + 2DIAGNOSTIC, 146, -7.956240784232e-01, 4.974089282059e-05, 4.9327e-01, 1.3700e-03, + 2DIAGNOSTIC, 147, -7.964159728051e-01, 5.396832329983e-05, 4.9490e-01, 1.6279e-03, + 2DIAGNOSTIC, 148, -8.029643770512e-01, 7.097070038053e-05, 4.9667e-01, 1.7769e-03, + 2DIAGNOSTIC, 149, -8.108161456805e-01, 1.042847408909e-04, 4.9871e-01, 2.0370e-03, + 2DIAGNOSTIC, 150, -8.095476197814e-01, 1.241026529623e-04, 5.0129e-01, 2.5802e-03, + 2DIAGNOSTIC, 151, -8.093581140930e-01, 1.313672947692e-04, 5.0686e-01, 5.5678e-03, + 2DIAGNOSTIC, 152, -8.093581112506e-01, 1.320676967596e-04, 5.0828e-01, 1.4210e-03, + 2DIAGNOSTIC, 153, -8.093581196335e-01, 1.252303650734e-04, 5.0966e-01, 1.3840e-03, + 2DIAGNOSTIC, 154, -8.093581338087e-01, 1.080177975219e-04, 5.1096e-01, 1.3001e-03, + 2DIAGNOSTIC, 155, -8.093581577787e-01, 8.166948490924e-05, 5.1236e-01, 1.3952e-03, + 2DIAGNOSTIC, 156, -8.093581983108e-01, 4.906017328007e-05, 5.1377e-01, 1.4122e-03, + 2DIAGNOSTIC, 157, -8.093582668481e-01, 1.411851585580e-05, 5.1518e-01, 1.4112e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.729888121911e-01, 1.797693134862e+308, 7.6024e-01, 2.4506e-01, + 2DIAGNOSTIC, 2, -6.719295229659e-01, 1.797693134862e+308, 7.6239e-01, 2.1451e-03, + 2DIAGNOSTIC, 3, -6.729640135496e-01, 1.797693134862e+308, 7.6447e-01, 2.0800e-03, + 2DIAGNOSTIC, 4, -6.738157388303e-01, 1.797693134862e+308, 7.6635e-01, 1.8849e-03, + 2DIAGNOSTIC, 5, -6.746000856826e-01, 1.797693134862e+308, 7.6823e-01, 1.8749e-03, + 2DIAGNOSTIC, 6, -6.753320464140e-01, 1.797693134862e+308, 7.7046e-01, 2.2302e-03, + 2DIAGNOSTIC, 7, -6.762928089314e-01, 1.797693134862e+308, 7.7274e-01, 2.2781e-03, + 2DIAGNOSTIC, 8, -6.763400834239e-01, 1.797693134862e+308, 7.7469e-01, 1.9529e-03, + 2DIAGNOSTIC, 9, -6.767778576633e-01, 1.797693134862e+308, 7.7692e-01, 2.2321e-03, + 2DIAGNOSTIC, 10, -6.766497543710e-01, 4.894154947284e-04, 7.7944e-01, 2.5201e-03, + 2DIAGNOSTIC, 11, -6.768212069646e-01, 4.301918712369e-04, 7.8217e-01, 2.7339e-03, + 2DIAGNOSTIC, 12, -6.769931804021e-01, 3.105455289591e-04, 7.8509e-01, 2.9149e-03, + 2DIAGNOSTIC, 13, -6.780744185750e-01, 2.495714899778e-04, 7.8803e-01, 2.9411e-03, + 2DIAGNOSTIC, 14, -6.779304865117e-01, 1.952392765620e-04, 7.9057e-01, 2.5370e-03, + 2DIAGNOSTIC, 15, -6.780409236528e-01, 1.559656442053e-04, 7.9362e-01, 3.0560e-03, + 2DIAGNOSTIC, 16, -6.779130171354e-01, 1.231234095256e-04, 7.9631e-01, 2.6901e-03, + 2DIAGNOSTIC, 17, -6.779775437363e-01, 1.082863318703e-04, 7.9848e-01, 2.1701e-03, + 2DIAGNOSTIC, 18, -6.782418682696e-01, 9.181951283495e-05, 8.0092e-01, 2.4350e-03, + 2DIAGNOSTIC, 19, -6.787949027227e-01, 9.060909025033e-05, 8.0340e-01, 2.4819e-03, + 2DIAGNOSTIC, 20, -6.794881351941e-01, 9.317591097276e-05, 8.0643e-01, 3.0291e-03, + 2DIAGNOSTIC, 21, -6.797837830850e-01, 9.627753501606e-05, 8.0889e-01, 2.4562e-03, + 2DIAGNOSTIC, 22, -6.796676167341e-01, 9.086538172211e-05, 8.1104e-01, 2.1529e-03, + 2DIAGNOSTIC, 23, -6.793761057355e-01, 9.225147176760e-05, 8.1320e-01, 2.1620e-03, + 2DIAGNOSTIC, 24, -6.792418946456e-01, 8.005588261223e-05, 8.1566e-01, 2.4550e-03, + 2DIAGNOSTIC, 25, -6.794290935572e-01, 6.631551345030e-05, 8.1943e-01, 3.7749e-03, + 2DIAGNOSTIC, 26, -6.795966657841e-01, 4.802172442700e-05, 8.2283e-01, 3.4029e-03, + 2DIAGNOSTIC, 27, -6.794488248575e-01, 2.550443340486e-05, 8.2563e-01, 2.8000e-03, + 2DIAGNOSTIC, 28, -6.793050694628e-01, 4.300854251474e-06, 8.2793e-01, 2.2938e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.536104426996e-01, 1.797693134862e+308, 1.1059e+00, 2.7795e-01, + 2DIAGNOSTIC, 2, -5.550702698227e-01, 1.797693134862e+308, 1.1191e+00, 1.3214e-02, + 2DIAGNOSTIC, 3, -5.562619899685e-01, 1.797693134862e+308, 1.1317e+00, 1.2604e-02, + 2DIAGNOSTIC, 4, -5.571092634571e-01, 1.797693134862e+308, 1.1442e+00, 1.2465e-02, + 2DIAGNOSTIC, 5, -5.582284095431e-01, 1.797693134862e+308, 1.1587e+00, 1.4513e-02, + 2DIAGNOSTIC, 6, -5.585870401601e-01, 1.797693134862e+308, 1.1730e+00, 1.4334e-02, + 2DIAGNOSTIC, 7, -5.586244052156e-01, 1.797693134862e+308, 1.1853e+00, 1.2297e-02, + 2DIAGNOSTIC, 8, -5.587217116553e-01, 1.797693134862e+308, 1.1996e+00, 1.4297e-02, + 2DIAGNOSTIC, 9, -5.589695006748e-01, 1.797693134862e+308, 1.2141e+00, 1.4543e-02, + 2DIAGNOSTIC, 10, -5.590387598946e-01, 5.807706079859e-04, 1.2268e+00, 1.2611e-02, + 2DIAGNOSTIC, 11, -5.590539845309e-01, 3.713900974986e-04, 1.2397e+00, 1.2928e-02, + 2DIAGNOSTIC, 12, -5.593740942895e-01, 2.393833133673e-04, 1.2596e+00, 1.9874e-02, + 2DIAGNOSTIC, 13, -5.594659596901e-01, 1.560657968894e-04, 1.2755e+00, 1.5933e-02, + 2DIAGNOSTIC, 14, -5.594444717967e-01, 9.966879938997e-05, 1.2895e+00, 1.3995e-02, + 2DIAGNOSTIC, 15, -5.594209973448e-01, 7.900285330933e-05, 1.3036e+00, 1.4082e-02, + 2DIAGNOSTIC, 16, -5.593824294134e-01, 6.420147308743e-05, 1.3158e+00, 1.2255e-02, + 2DIAGNOSTIC, 17, -5.593598811422e-01, 4.574271310349e-05, 1.3279e+00, 1.2061e-02, + 2DIAGNOSTIC, 18, -5.594118583401e-01, 2.925702321055e-05, 1.3400e+00, 1.2090e-02, + 2DIAGNOSTIC, 19, -5.594226142115e-01, 1.892022162165e-05, 1.3522e+00, 1.2203e-02, + 2DIAGNOSTIC, 20, -5.594406430842e-01, 1.037803084209e-05, 1.3645e+00, 1.2294e-02, + 2DIAGNOSTIC, 21, -5.595260690067e-01, 4.098650080796e-06, 1.3784e+00, 1.3953e-02, + 2DIAGNOSTIC, 22, -5.595485094147e-01, 5.958047920168e-06, 1.3923e+00, 1.3929e-02, + 2DIAGNOSTIC, 23, -5.595788710034e-01, 9.927707201984e-06, 1.4050e+00, 1.2630e-02, + 2DIAGNOSTIC, 24, -5.596235204766e-01, 1.326026086172e-05, 1.4251e+00, 2.0101e-02, + 2DIAGNOSTIC, 25, -5.596191097529e-01, 1.464743380017e-05, 1.4393e+00, 1.4227e-02, + 2DIAGNOSTIC, 26, -5.596589401675e-01, 1.471452999249e-05, 1.4534e+00, 1.4119e-02, + 2DIAGNOSTIC, 27, -5.597492929686e-01, 1.473927946966e-05, 1.4675e+00, 1.4063e-02, + 2DIAGNOSTIC, 28, -5.597993163800e-01, 1.530653330469e-05, 1.4798e+00, 1.2275e-02, + 2DIAGNOSTIC, 29, -5.598435971279e-01, 1.546764816986e-05, 1.4957e+00, 1.5942e-02, + 2DIAGNOSTIC, 30, -5.598949314156e-01, 1.541629554627e-05, 1.5092e+00, 1.3525e-02, + 2DIAGNOSTIC, 31, -5.599630350310e-01, 1.651722116455e-05, 1.5237e+00, 1.4473e-02, + 2DIAGNOSTIC, 32, -5.599611777119e-01, 1.636298885484e-05, 1.5379e+00, 1.4243e-02, + 2DIAGNOSTIC, 33, -5.599968190218e-01, 1.577259074770e-05, 1.5631e+00, 2.5105e-02, + 2DIAGNOSTIC, 34, -5.599821827618e-01, 1.427544792246e-05, 1.5751e+00, 1.2073e-02, + 2DIAGNOSTIC, 35, -5.599855524559e-01, 1.158578545629e-05, 1.5871e+00, 1.1941e-02, + 2DIAGNOSTIC, 36, -5.599747717177e-01, 8.408546784026e-06, 1.5991e+00, 1.2075e-02, + 2DIAGNOSTIC, 37, -5.599780874608e-01, 5.970080239413e-06, 1.6116e+00, 1.2450e-02, + 2DIAGNOSTIC, 38, -5.599941982010e-01, 4.055005053405e-06, 1.6244e+00, 1.2837e-02, + 2DIAGNOSTIC, 39, -5.599805328499e-01, 2.315461822139e-06, 1.6381e+00, 1.3627e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.809838804367e-01, 1.797693134862e+308, 2.0641e+00, 4.2600e-01, + 2DIAGNOSTIC, 2, -4.812128022878e-01, 1.797693134862e+308, 2.1496e+00, 8.5581e-02, + 2DIAGNOSTIC, 3, -4.814578672602e-01, 1.797693134862e+308, 2.2306e+00, 8.0924e-02, + 2DIAGNOSTIC, 4, -4.816881718934e-01, 1.797693134862e+308, 2.3083e+00, 7.7709e-02, + 2DIAGNOSTIC, 5, -4.820229188054e-01, 1.797693134862e+308, 2.3940e+00, 8.5694e-02, + 2DIAGNOSTIC, 6, -4.824029691486e-01, 1.797693134862e+308, 2.4905e+00, 9.6506e-02, + 2DIAGNOSTIC, 7, -4.828636432085e-01, 1.797693134862e+308, 2.5648e+00, 7.4324e-02, + 2DIAGNOSTIC, 8, -4.831679271749e-01, 1.797693134862e+308, 2.6403e+00, 7.5534e-02, + 2DIAGNOSTIC, 9, -4.833539137504e-01, 1.797693134862e+308, 2.7489e+00, 1.0854e-01, + 2DIAGNOSTIC, 10, -4.834409630315e-01, 3.650170113724e-04, 2.8459e+00, 9.6989e-02, + 2DIAGNOSTIC, 11, -4.834758930504e-01, 3.122606395217e-04, 2.9409e+00, 9.5087e-02, + 2DIAGNOSTIC, 12, -4.836055186287e-01, 2.578799760130e-04, 3.0494e+00, 1.0850e-01, + 2DIAGNOSTIC, 13, -4.836011301333e-01, 1.994845933968e-04, 3.1327e+00, 8.3255e-02, + 2DIAGNOSTIC, 14, -4.839842047390e-01, 1.573513238921e-04, 3.2170e+00, 8.4323e-02, + 2DIAGNOSTIC, 15, -4.841856227395e-01, 1.272810458556e-04, 3.3102e+00, 9.3226e-02, + 2DIAGNOSTIC, 16, -4.842383660484e-01, 1.050899391945e-04, 3.3959e+00, 8.5640e-02, + 2DIAGNOSTIC, 17, -4.842654091161e-01, 9.290329710269e-05, 3.4812e+00, 8.5333e-02, + 2DIAGNOSTIC, 18, -4.842966416516e-01, 8.455454174976e-05, 3.6019e+00, 1.2066e-01, + 2DIAGNOSTIC, 19, -4.843100440602e-01, 7.537776039583e-05, 3.6756e+00, 7.3679e-02, + 2DIAGNOSTIC, 20, -4.843644180797e-01, 6.431150379854e-05, 3.7741e+00, 9.8576e-02, + 2DIAGNOSTIC, 21, -4.843810217310e-01, 4.989876731382e-05, 3.8610e+00, 8.6889e-02, + 2DIAGNOSTIC, 22, -4.843786607142e-01, 3.588937131923e-05, 4.0153e+00, 1.5428e-01, + 2DIAGNOSTIC, 23, -4.843808059701e-01, 1.963687318738e-05, 4.0887e+00, 7.3418e-02, + 2DIAGNOSTIC, 24, -4.843772483305e-01, 1.220498642776e-05, 4.1655e+00, 7.6768e-02, + 2DIAGNOSTIC, 25, -4.843728261518e-01, 8.942492002298e-06, 4.2772e+00, 1.1170e-01, + 2DIAGNOSTIC, 26, -4.843749811408e-01, 6.439539933338e-06, 4.3740e+00, 9.6812e-02, + 2DIAGNOSTIC, 27, -4.843711323859e-01, 4.135185227613e-06, 4.4642e+00, 9.0236e-02, + 2DIAGNOSTIC, 28, -4.843692979324e-01, 2.346644737243e-06, 4.5623e+00, 9.8075e-02, + Elapsed time (stage 0): 4.7107e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.825551977576e-01, 1.797693134862e+308, 2.1098e-01, 2.1098e-01, + 2DIAGNOSTIC, 2, -7.840166652706e-01, 1.797693134862e+308, 2.1248e-01, 1.5008e-03, + 2DIAGNOSTIC, 3, -7.873732704792e-01, 1.797693134862e+308, 2.1399e-01, 1.5080e-03, + 2DIAGNOSTIC, 4, -7.918848838551e-01, 1.797693134862e+308, 2.1530e-01, 1.3049e-03, + 2DIAGNOSTIC, 5, -7.999317426089e-01, 1.797693134862e+308, 2.1651e-01, 1.2121e-03, + 2DIAGNOSTIC, 6, -8.109542803828e-01, 1.797693134862e+308, 2.1780e-01, 1.2860e-03, + 2DIAGNOSTIC, 7, -8.245926485459e-01, 1.797693134862e+308, 2.1919e-01, 1.3912e-03, + 2DIAGNOSTIC, 8, -8.398496358287e-01, 1.797693134862e+308, 2.2123e-01, 2.0421e-03, + 2DIAGNOSTIC, 9, -8.397858560734e-01, 1.797693134862e+308, 2.2258e-01, 1.3490e-03, + 2DIAGNOSTIC, 10, -8.429562182155e-01, 5.721739862160e-03, 2.2443e-01, 1.8480e-03, + 2DIAGNOSTIC, 11, -8.457843732917e-01, 5.237814331244e-03, 2.2592e-01, 1.4911e-03, + 2DIAGNOSTIC, 12, -8.458475710069e-01, 4.405613942370e-03, 2.2765e-01, 1.7321e-03, + 2DIAGNOSTIC, 13, -8.478941662375e-01, 3.450862291948e-03, 2.2923e-01, 1.5838e-03, + 2DIAGNOSTIC, 14, -8.616577974573e-01, 2.774354540162e-03, 2.3130e-01, 2.0661e-03, + 2DIAGNOSTIC, 15, -8.670494691031e-01, 2.240037418479e-03, 2.3320e-01, 1.9050e-03, + 2DIAGNOSTIC, 16, -8.685755536216e-01, 1.835531039033e-03, 2.3591e-01, 2.7020e-03, + 2DIAGNOSTIC, 17, -8.691909800030e-01, 1.596348063204e-03, 2.3760e-01, 1.6961e-03, + 2DIAGNOSTIC, 18, -8.700124036269e-01, 1.544674377429e-03, 2.3956e-01, 1.9550e-03, + 2DIAGNOSTIC, 19, -8.695087165022e-01, 1.340405440492e-03, 2.4177e-01, 2.2161e-03, + 2DIAGNOSTIC, 20, -8.692728388624e-01, 1.080413493731e-03, 2.4387e-01, 2.0959e-03, + 2DIAGNOSTIC, 21, -8.697186240344e-01, 8.021452381274e-04, 2.4539e-01, 1.5171e-03, + 2DIAGNOSTIC, 22, -8.697765344453e-01, 4.796884363126e-04, 2.4669e-01, 1.2999e-03, + 2DIAGNOSTIC, 23, -8.704328117030e-01, 1.766279607386e-04, 2.4845e-01, 1.7622e-03, + 2DIAGNOSTIC, 24, -8.717087995424e-01, 9.305752132788e-05, 2.4987e-01, 1.4200e-03, + 2DIAGNOSTIC, 25, -8.728050817364e-01, 9.467938914513e-05, 2.5209e-01, 2.2240e-03, + 2DIAGNOSTIC, 26, -8.738684402572e-01, 1.205673125033e-04, 2.5402e-01, 1.9281e-03, + 2DIAGNOSTIC, 27, -8.742685663262e-01, 1.454587025690e-04, 2.5562e-01, 1.6029e-03, + 2DIAGNOSTIC, 28, -8.737096094362e-01, 1.583410278311e-04, 2.5697e-01, 1.3449e-03, + 2DIAGNOSTIC, 29, -8.732381955423e-01, 1.444706793195e-04, 2.5827e-01, 1.2991e-03, + 2DIAGNOSTIC, 30, -8.729049649138e-01, 1.114848621930e-04, 2.5966e-01, 1.3928e-03, + 2DIAGNOSTIC, 31, -8.721032968353e-01, 6.638722370984e-05, 2.6110e-01, 1.4441e-03, + 2DIAGNOSTIC, 32, -8.723273300252e-01, 2.112296144979e-05, 2.6284e-01, 1.7350e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.615624862366e-01, 1.797693134862e+308, 4.7781e-01, 2.1497e-01, + 2DIAGNOSTIC, 2, -7.609661957618e-01, 1.797693134862e+308, 4.8062e-01, 2.8169e-03, + 2DIAGNOSTIC, 3, -7.627347668865e-01, 1.797693134862e+308, 4.8334e-01, 2.7120e-03, + 2DIAGNOSTIC, 4, -7.642057301323e-01, 1.797693134862e+308, 4.8593e-01, 2.5959e-03, + 2DIAGNOSTIC, 5, -7.669163550022e-01, 1.797693134862e+308, 4.8800e-01, 2.0630e-03, + 2DIAGNOSTIC, 6, -7.704378150871e-01, 1.797693134862e+308, 4.9007e-01, 2.0781e-03, + 2DIAGNOSTIC, 7, -7.756653139204e-01, 1.797693134862e+308, 4.9244e-01, 2.3670e-03, + 2DIAGNOSTIC, 8, -7.806394700885e-01, 1.797693134862e+308, 4.9602e-01, 3.5839e-03, + 2DIAGNOSTIC, 9, -7.806759255255e-01, 1.797693134862e+308, 4.9923e-01, 3.2089e-03, + 2DIAGNOSTIC, 10, -7.805924860302e-01, 2.022935910234e-03, 5.0151e-01, 2.2728e-03, + 2DIAGNOSTIC, 11, -7.810282245220e-01, 1.828211780692e-03, 5.0433e-01, 2.8288e-03, + 2DIAGNOSTIC, 12, -7.809437539840e-01, 1.478218895399e-03, 5.0684e-01, 2.5029e-03, + 2DIAGNOSTIC, 13, -7.810432445024e-01, 1.100954435763e-03, 5.0904e-01, 2.2030e-03, + 2DIAGNOSTIC, 14, -7.810193923859e-01, 7.172965984440e-04, 5.1125e-01, 2.2049e-03, + 2DIAGNOSTIC, 15, -7.812315982303e-01, 3.926328099747e-04, 5.1357e-01, 2.3248e-03, + 2DIAGNOSTIC, 16, -7.814974147206e-01, 1.576736356072e-04, 5.1590e-01, 2.3291e-03, + 2DIAGNOSTIC, 17, -7.817792851853e-01, 5.190983209086e-05, 5.1819e-01, 2.2912e-03, + 2DIAGNOSTIC, 18, -7.820734044584e-01, 6.072151685512e-05, 5.2090e-01, 2.7080e-03, + 2DIAGNOSTIC, 19, -7.822283208259e-01, 6.692142056053e-05, 5.2322e-01, 2.3170e-03, + 2DIAGNOSTIC, 20, -7.821099467963e-01, 6.250968470065e-05, 5.2550e-01, 2.2862e-03, + 2DIAGNOSTIC, 21, -7.824398549732e-01, 6.631762649412e-05, 5.2805e-01, 2.5501e-03, + 2DIAGNOSTIC, 22, -7.822657854006e-01, 5.918167642206e-05, 5.3031e-01, 2.2600e-03, + 2DIAGNOSTIC, 23, -7.821743322172e-01, 4.752680768851e-05, 5.3255e-01, 2.2409e-03, + 2DIAGNOSTIC, 24, -7.823286127065e-01, 3.457983131339e-05, 5.3504e-01, 2.4879e-03, + 2DIAGNOSTIC, 25, -7.825811338639e-01, 2.624008436290e-05, 5.3844e-01, 3.3989e-03, + 2DIAGNOSTIC, 26, -7.825190504080e-01, 1.887647473829e-05, 5.4096e-01, 2.5239e-03, + 2DIAGNOSTIC, 27, -7.823801643229e-01, 1.234755458009e-05, 5.4409e-01, 3.1290e-03, + 2DIAGNOSTIC, 28, -7.819258922036e-01, 3.255922531448e-06, 5.4744e-01, 3.3481e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.614640332588e-01, 1.797693134862e+308, 7.8004e-01, 2.3259e-01, + 2DIAGNOSTIC, 2, -6.626254653158e-01, 1.797693134862e+308, 7.9320e-01, 1.3160e-02, + 2DIAGNOSTIC, 3, -6.635037863970e-01, 1.797693134862e+308, 8.0664e-01, 1.3443e-02, + 2DIAGNOSTIC, 4, -6.641005005973e-01, 1.797693134862e+308, 8.2008e-01, 1.3441e-02, + 2DIAGNOSTIC, 5, -6.646702150522e-01, 1.797693134862e+308, 8.3382e-01, 1.3737e-02, + 2DIAGNOSTIC, 6, -6.656340997083e-01, 1.797693134862e+308, 8.5097e-01, 1.7151e-02, + 2DIAGNOSTIC, 7, -6.660764244992e-01, 1.797693134862e+308, 8.6812e-01, 1.7155e-02, + 2DIAGNOSTIC, 8, -6.662091019615e-01, 1.797693134862e+308, 8.8343e-01, 1.5311e-02, + 2DIAGNOSTIC, 9, -6.664803376542e-01, 1.797693134862e+308, 8.9777e-01, 1.4338e-02, + 2DIAGNOSTIC, 10, -6.680214311143e-01, 5.548676043189e-04, 9.1366e-01, 1.5888e-02, + 2DIAGNOSTIC, 11, -6.699186600869e-01, 5.349893801281e-04, 9.2943e-01, 1.5774e-02, + 2DIAGNOSTIC, 12, -6.704007795023e-01, 5.273692049278e-04, 9.4523e-01, 1.5793e-02, + 2DIAGNOSTIC, 13, -6.708700496267e-01, 5.189182694970e-04, 9.6116e-01, 1.5936e-02, + 2DIAGNOSTIC, 14, -6.710778000282e-01, 4.897441750967e-04, 9.7913e-01, 1.7964e-02, + 2DIAGNOSTIC, 15, -6.713953486592e-01, 4.438722174732e-04, 9.9522e-01, 1.6092e-02, + 2DIAGNOSTIC, 16, -6.713203325014e-01, 3.857472304624e-04, 1.0109e+00, 1.5673e-02, + 2DIAGNOSTIC, 17, -6.713400937907e-01, 3.111852288710e-04, 1.0236e+00, 1.2671e-02, + 2DIAGNOSTIC, 18, -6.713810949126e-01, 2.213238453099e-04, 1.0360e+00, 1.2461e-02, + 2DIAGNOSTIC, 19, -6.715628499396e-01, 1.302842981814e-04, 1.0494e+00, 1.3404e-02, + 2DIAGNOSTIC, 20, -6.718195911739e-01, 7.360713035642e-05, 1.0634e+00, 1.3935e-02, + 2DIAGNOSTIC, 21, -6.723274176721e-01, 6.417463616860e-05, 1.0772e+00, 1.3814e-02, + 2DIAGNOSTIC, 22, -6.740089384251e-01, 9.128459451300e-05, 1.0978e+00, 2.0590e-02, + 2DIAGNOSTIC, 23, -6.741869428208e-01, 1.187893154671e-04, 1.1176e+00, 1.9788e-02, + 2DIAGNOSTIC, 24, -6.742225671954e-01, 1.374603975979e-04, 1.1330e+00, 1.5443e-02, + 2DIAGNOSTIC, 25, -6.742528091117e-01, 1.481754268184e-04, 1.1465e+00, 1.3454e-02, + 2DIAGNOSTIC, 26, -6.744063094982e-01, 1.453571640442e-04, 1.1598e+00, 1.3313e-02, + 2DIAGNOSTIC, 27, -6.745968385290e-01, 1.320233639792e-04, 1.1851e+00, 2.5316e-02, + 2DIAGNOSTIC, 28, -6.746168487633e-01, 1.081390144702e-04, 1.1984e+00, 1.3357e-02, + 2DIAGNOSTIC, 29, -6.746380229373e-01, 7.920449179646e-05, 1.2121e+00, 1.3659e-02, + 2DIAGNOSTIC, 30, -6.746748743714e-01, 4.912328648280e-05, 1.2256e+00, 1.3460e-02, + 2DIAGNOSTIC, 31, -6.746744411010e-01, 2.271299055909e-05, 1.2394e+00, 1.3867e-02, + 2DIAGNOSTIC, 32, -6.746851854387e-01, 1.823517141552e-05, 1.2548e+00, 1.5355e-02, + 2DIAGNOSTIC, 33, -6.746775790559e-01, 1.459768830012e-05, 1.2705e+00, 1.5712e-02, + 2DIAGNOSTIC, 34, -6.746670964630e-01, 1.024344006047e-05, 1.2870e+00, 1.6535e-02, + 2DIAGNOSTIC, 35, -6.747820233974e-01, 6.987808395635e-06, 1.3080e+00, 2.0943e-02, + 2DIAGNOSTIC, 36, -6.748245120017e-01, 5.542044475504e-06, 1.3269e+00, 1.8938e-02, + 2DIAGNOSTIC, 37, -6.748333209474e-01, 6.015713588287e-06, 1.3419e+00, 1.4990e-02, + 2DIAGNOSTIC, 38, -6.748677883726e-01, 6.604254478682e-06, 1.3582e+00, 1.6291e-02, + 2DIAGNOSTIC, 39, -6.748801864073e-01, 6.963717896616e-06, 1.3749e+00, 1.6754e-02, + 2DIAGNOSTIC, 40, -6.748524478277e-01, 6.796320798284e-06, 1.3888e+00, 1.3823e-02, + 2DIAGNOSTIC, 41, -6.748644747513e-01, 6.182077139798e-06, 1.4023e+00, 1.3574e-02, + 2DIAGNOSTIC, 42, -6.748810590227e-01, 5.367497562091e-06, 1.4179e+00, 1.5587e-02, + 2DIAGNOSTIC, 43, -6.748924789290e-01, 4.197721619456e-06, 1.4325e+00, 1.4531e-02, + 2DIAGNOSTIC, 44, -6.749082745542e-01, 2.775335152670e-06, 1.4461e+00, 1.3674e-02, + 2DIAGNOSTIC, 45, -6.749629324403e-01, 2.813150401983e-06, 1.4598e+00, 1.3680e-02, + 2DIAGNOSTIC, 46, -6.750350248523e-01, 3.692966764685e-06, 1.4732e+00, 1.3419e-02, + 2DIAGNOSTIC, 47, -6.751363213991e-01, 5.213966598052e-06, 1.4869e+00, 1.3694e-02, + 2DIAGNOSTIC, 48, -6.751942530025e-01, 7.034203393857e-06, 1.4995e+00, 1.2586e-02, + 2DIAGNOSTIC, 49, -6.754127410917e-01, 1.017491923541e-05, 1.5138e+00, 1.4334e-02, + 2DIAGNOSTIC, 50, -6.754369622950e-01, 1.220364439819e-05, 1.5429e+00, 2.9033e-02, + 2DIAGNOSTIC, 51, -6.754573964500e-01, 1.332097778159e-05, 1.5589e+00, 1.6011e-02, + 2DIAGNOSTIC, 52, -6.754651885577e-01, 1.339049506770e-05, 1.5730e+00, 1.4145e-02, + 2DIAGNOSTIC, 53, -6.754155903045e-01, 1.192383137076e-05, 1.5862e+00, 1.3185e-02, + 2DIAGNOSTIC, 54, -6.754216871755e-01, 9.587046121067e-06, 1.6015e+00, 1.5296e-02, + 2DIAGNOSTIC, 55, -6.754267219633e-01, 6.916386914385e-06, 1.6152e+00, 1.3702e-02, + 2DIAGNOSTIC, 56, -6.753976396096e-01, 4.057722910684e-06, 1.6296e+00, 1.4380e-02, + 2DIAGNOSTIC, 57, -6.754052814792e-01, 1.789857587205e-06, 1.6434e+00, 1.3827e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.652544593110e-01, 1.797693134862e+308, 2.0773e+00, 4.3384e-01, + 2DIAGNOSTIC, 2, -5.658974835372e-01, 1.797693134862e+308, 2.1756e+00, 9.8379e-02, + 2DIAGNOSTIC, 3, -5.664852281079e-01, 1.797693134862e+308, 2.2751e+00, 9.9487e-02, + 2DIAGNOSTIC, 4, -5.672202533807e-01, 1.797693134862e+308, 2.3729e+00, 9.7742e-02, + 2DIAGNOSTIC, 5, -5.683261875014e-01, 1.797693134862e+308, 2.4639e+00, 9.1040e-02, + 2DIAGNOSTIC, 6, -5.693999367278e-01, 1.797693134862e+308, 2.5858e+00, 1.2188e-01, + 2DIAGNOSTIC, 7, -5.695814536267e-01, 1.797693134862e+308, 2.6703e+00, 8.4472e-02, + 2DIAGNOSTIC, 8, -5.699140358999e-01, 1.797693134862e+308, 2.7538e+00, 8.3510e-02, + 2DIAGNOSTIC, 9, -5.726889725323e-01, 1.797693134862e+308, 2.8672e+00, 1.1344e-01, + 2DIAGNOSTIC, 10, -5.728273369823e-01, 8.623111014566e-04, 3.0032e+00, 1.3597e-01, + 2DIAGNOSTIC, 11, -5.728545340618e-01, 7.795945529466e-04, 3.1145e+00, 1.1128e-01, + 2DIAGNOSTIC, 12, -5.728738428061e-01, 6.706781674039e-04, 3.2213e+00, 1.0684e-01, + 2DIAGNOSTIC, 13, -5.728687059289e-01, 5.404916022681e-04, 3.3151e+00, 9.3754e-02, + 2DIAGNOSTIC, 14, -5.728789869577e-01, 4.044328663500e-04, 3.4563e+00, 1.4124e-01, + 2DIAGNOSTIC, 15, -5.728809565805e-01, 2.855213233930e-04, 3.5947e+00, 1.3837e-01, + 2DIAGNOSTIC, 16, -5.728808720221e-01, 1.903419836150e-04, 3.7040e+00, 1.0933e-01, + 2DIAGNOSTIC, 17, -5.728774030759e-01, 9.505219140037e-05, 3.8174e+00, 1.1338e-01, + 2DIAGNOSTIC, 18, -5.728766351681e-01, 8.828315010576e-06, 3.9291e+00, 1.1170e-01, + 2DIAGNOSTIC, 19, -5.728776526523e-01, 3.728240635950e-06, 4.0395e+00, 1.1039e-01, + 2DIAGNOSTIC, 20, -5.728764062949e-01, 2.343484762003e-06, 4.1659e+00, 1.2643e-01, + 2DIAGNOSTIC, 21, -5.728738115470e-01, 1.595063415905e-06, 4.2776e+00, 1.1167e-01, + 2DIAGNOSTIC, 22, -5.728692322500e-01, 1.251118091822e-06, 4.3917e+00, 1.1410e-01, + Elapsed time (stage 1): 4.5210e+00 + + +Total elapsed time: 9.2355e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:13:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:13:58 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55fd15d844f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fd15d89fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f19dbf33010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55fd15d85850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fd15d82f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f19d8874010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55fd15d9cb80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fd15d89550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f19d51b5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55fd15da1d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fd15d9fc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f19d1af6010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55fd15da3f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fd15da23a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f19ce437010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55fd15da4540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fd15da44d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f19cad78010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.217254579176e-01, 1.797693134862e+308, 2.1645e-01, 2.1645e-01, + 2DIAGNOSTIC, 2, -6.245972379976e-01, 1.797693134862e+308, 2.1843e-01, 1.9729e-03, + 2DIAGNOSTIC, 3, -6.280639678807e-01, 1.797693134862e+308, 2.2037e-01, 1.9391e-03, + 2DIAGNOSTIC, 4, -6.328101175661e-01, 1.797693134862e+308, 2.2227e-01, 1.9090e-03, + 2DIAGNOSTIC, 5, -6.394060244557e-01, 1.797693134862e+308, 2.2419e-01, 1.9150e-03, + 2DIAGNOSTIC, 6, -6.437507121716e-01, 1.797693134862e+308, 2.2603e-01, 1.8401e-03, + 2DIAGNOSTIC, 7, -6.453042402921e-01, 1.797693134862e+308, 2.2787e-01, 1.8392e-03, + 2DIAGNOSTIC, 8, -6.461292444063e-01, 1.797693134862e+308, 2.3024e-01, 2.3711e-03, + 2DIAGNOSTIC, 9, -6.469038447470e-01, 1.797693134862e+308, 2.3261e-01, 2.3701e-03, + 2DIAGNOSTIC, 10, -6.470627698276e-01, 2.858731236433e-03, 2.3468e-01, 2.0740e-03, + 2DIAGNOSTIC, 11, -6.488089891895e-01, 2.191770500906e-03, 2.3749e-01, 2.8069e-03, + 2DIAGNOSTIC, 12, -6.490388397340e-01, 1.555851642131e-03, 2.3949e-01, 1.9970e-03, + 2DIAGNOSTIC, 13, -6.494115273284e-01, 1.010403537802e-03, 2.4176e-01, 2.2731e-03, + 2DIAGNOSTIC, 14, -6.496323392802e-01, 6.063672418282e-04, 2.4377e-01, 2.0130e-03, + 2DIAGNOSTIC, 15, -6.495984763522e-01, 3.925790918513e-04, 2.4574e-01, 1.9650e-03, + 2DIAGNOSTIC, 16, -6.498556334169e-01, 2.961815607939e-04, 2.4773e-01, 1.9882e-03, + 2DIAGNOSTIC, 17, -6.510284411981e-01, 2.543872151680e-04, 2.5131e-01, 3.5791e-03, + 2DIAGNOSTIC, 18, -6.512164942080e-01, 2.181024930236e-04, 2.5458e-01, 3.2730e-03, + 2DIAGNOSTIC, 19, -6.510835313225e-01, 1.812252527683e-04, 2.5726e-01, 2.6779e-03, + 2DIAGNOSTIC, 20, -6.510853062841e-01, 1.345699190274e-04, 2.5934e-01, 2.0850e-03, + 2DIAGNOSTIC, 21, -6.510875516992e-01, 1.166405878201e-04, 2.6162e-01, 2.2821e-03, + 2DIAGNOSTIC, 22, -6.510899393943e-01, 9.362434623184e-05, 2.6394e-01, 2.3141e-03, + 2DIAGNOSTIC, 23, -6.510926749422e-01, 7.102007875779e-05, 2.6627e-01, 2.3360e-03, + 2DIAGNOSTIC, 24, -6.511062323697e-01, 4.854984038890e-05, 2.7338e-01, 7.1070e-03, + 2DIAGNOSTIC, 25, -6.511062322215e-01, 2.304101999503e-05, 2.8028e-01, 6.9008e-03, + 2DIAGNOSTIC, 26, -6.511062322215e-01, 1.255282266133e-06, 2.8380e-01, 3.5219e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.357318455455e-01, 1.797693134862e+308, 5.1507e-01, 2.3127e-01, + 2DIAGNOSTIC, 2, -5.365359978640e-01, 1.797693134862e+308, 5.2849e-01, 1.3415e-02, + 2DIAGNOSTIC, 3, -5.373144650838e-01, 1.797693134862e+308, 5.4188e-01, 1.3395e-02, + 2DIAGNOSTIC, 4, -5.383286596762e-01, 1.797693134862e+308, 5.5514e-01, 1.3256e-02, + 2DIAGNOSTIC, 5, -5.388356683729e-01, 1.797693134862e+308, 5.6850e-01, 1.3365e-02, + 2DIAGNOSTIC, 6, -5.391317067100e-01, 1.797693134862e+308, 5.8176e-01, 1.3256e-02, + 2DIAGNOSTIC, 7, -5.403796071266e-01, 1.797693134862e+308, 6.0296e-01, 2.1198e-02, + 2DIAGNOSTIC, 8, -5.404885771698e-01, 1.797693134862e+308, 6.1924e-01, 1.6278e-02, + 2DIAGNOSTIC, 9, -5.405894881262e-01, 1.797693134862e+308, 6.3305e-01, 1.3814e-02, + 2DIAGNOSTIC, 10, -5.406565365874e-01, 6.203853835770e-04, 6.4914e-01, 1.6088e-02, + 2DIAGNOSTIC, 11, -5.407067924838e-01, 4.657676690339e-04, 6.6319e-01, 1.4056e-02, + 2DIAGNOSTIC, 12, -5.407791619438e-01, 3.329800767647e-04, 6.8164e-01, 1.8446e-02, + 2DIAGNOSTIC, 13, -5.407832773240e-01, 2.215577531223e-04, 6.9766e-01, 1.6018e-02, + 2DIAGNOSTIC, 14, -5.407650060237e-01, 1.440069422349e-04, 7.2375e-01, 2.6092e-02, + 2DIAGNOSTIC, 15, -5.407676976792e-01, 8.208150269641e-05, 7.3959e-01, 1.5844e-02, + 2DIAGNOSTIC, 16, -5.407681699394e-01, 2.921186923545e-05, 7.5357e-01, 1.3979e-02, + 2DIAGNOSTIC, 17, -5.407558373082e-01, 1.827275831929e-05, 7.6731e-01, 1.3741e-02, + 2DIAGNOSTIC, 18, -5.407571035507e-01, 1.022889806934e-05, 7.8143e-01, 1.4117e-02, + 2DIAGNOSTIC, 19, -5.407590093444e-01, 5.098347922124e-06, 7.9488e-01, 1.3446e-02, + 2DIAGNOSTIC, 20, -5.407615589524e-01, 1.977233931180e-06, 8.0869e-01, 1.3811e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.545991486892e-01, 1.797693134862e+308, 1.1787e+00, 3.6998e-01, + 2DIAGNOSTIC, 2, -4.552108219728e-01, 1.797693134862e+308, 1.2716e+00, 9.2957e-02, + 2DIAGNOSTIC, 3, -4.555050642319e-01, 1.797693134862e+308, 1.3630e+00, 9.1343e-02, + 2DIAGNOSTIC, 4, -4.556066421695e-01, 1.797693134862e+308, 1.4540e+00, 9.1019e-02, + 2DIAGNOSTIC, 5, -4.556715193069e-01, 1.797693134862e+308, 1.5468e+00, 9.2849e-02, + 2DIAGNOSTIC, 6, -4.557054631192e-01, 1.797693134862e+308, 1.6404e+00, 9.3611e-02, + 2DIAGNOSTIC, 7, -4.558935810633e-01, 1.797693134862e+308, 1.8619e+00, 2.2149e-01, + 2DIAGNOSTIC, 8, -4.559015166460e-01, 1.797693134862e+308, 1.9942e+00, 1.3228e-01, + 2DIAGNOSTIC, 9, -4.559028589863e-01, 1.797693134862e+308, 2.1264e+00, 1.3217e-01, + 2DIAGNOSTIC, 10, -4.559004160973e-01, 1.481428019810e-04, 2.2232e+00, 9.6775e-02, + 2DIAGNOSTIC, 11, -4.559022336310e-01, 8.133335548090e-05, 2.3090e+00, 8.5822e-02, + 2DIAGNOSTIC, 12, -4.559003666340e-01, 4.983384462327e-05, 2.4170e+00, 1.0802e-01, + 2DIAGNOSTIC, 13, -4.558990461260e-01, 3.286269536917e-05, 2.5099e+00, 9.2858e-02, + 2DIAGNOSTIC, 14, -4.558999190585e-01, 2.019112594584e-05, 2.6157e+00, 1.0581e-01, + 2DIAGNOSTIC, 15, -4.559016313013e-01, 1.040032245753e-05, 2.7251e+00, 1.0945e-01, + 2DIAGNOSTIC, 16, -4.559016379147e-01, 2.189487789558e-06, 2.8225e+00, 9.7408e-02, + 2DIAGNOSTIC, 17, -4.559008503596e-01, 1.792026995580e-06, 2.9070e+00, 8.4471e-02, + 2DIAGNOSTIC, 18, -4.558999718040e-01, 1.691953789795e-06, 3.0121e+00, 1.0512e-01, + 2DIAGNOSTIC, 19, -4.559026202507e-01, 1.742442688475e-06, 3.1213e+00, 1.0914e-01, + 2DIAGNOSTIC, 20, -4.559011950019e-01, 1.653892624812e-06, 3.2437e+00, 1.2239e-01, + 2DIAGNOSTIC, 21, -4.559008596494e-01, 1.615104232369e-06, 3.3373e+00, 9.3658e-02, + 2DIAGNOSTIC, 22, -4.558998603708e-01, 1.492917898818e-06, 3.4435e+00, 1.0618e-01, + 2DIAGNOSTIC, 23, -4.559017969530e-01, 1.393834583155e-06, 3.5648e+00, 1.2127e-01, + 2DIAGNOSTIC, 24, -4.559013283985e-01, 1.308108312538e-06, 3.6717e+00, 1.0692e-01, + 2DIAGNOSTIC, 25, -4.559006327428e-01, 1.256553258874e-06, 3.7664e+00, 9.4673e-02, + 2DIAGNOSTIC, 26, -4.558990406314e-01, 1.175241018725e-06, 3.8612e+00, 9.4807e-02, + 2DIAGNOSTIC, 27, -4.558981738830e-01, 1.068034148219e-06, 3.9547e+00, 9.3544e-02, + 2DIAGNOSTIC, 28, -4.559011569960e-01, 1.022837452423e-06, 4.0619e+00, 1.0718e-01, + 2DIAGNOSTIC, 29, -4.559023493434e-01, 1.071955388440e-06, 4.1668e+00, 1.0495e-01, + 2DIAGNOSTIC, 30, -4.559005163683e-01, 1.053216112760e-06, 4.2715e+00, 1.0470e-01, + 2DIAGNOSTIC, 31, -4.558994721316e-01, 1.012505930903e-06, 4.3900e+00, 1.1847e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.921931002128e-01, 1.797693134862e+308, 5.7559e+00, 1.3659e+00, + 2DIAGNOSTIC, 2, -3.923614293227e-01, 1.797693134862e+308, 6.3642e+00, 6.0830e-01, + 2DIAGNOSTIC, 3, -3.923612916860e-01, 1.797693134862e+308, 7.4072e+00, 1.0430e+00, + 2DIAGNOSTIC, 4, -3.923615135484e-01, 1.797693134862e+308, 8.0628e+00, 6.5556e-01, + 2DIAGNOSTIC, 5, -3.923611467265e-01, 1.797693134862e+308, 8.9385e+00, 8.7575e-01, + 2DIAGNOSTIC, 6, -3.923612296630e-01, 1.797693134862e+308, 9.5455e+00, 6.0700e-01, + 2DIAGNOSTIC, 7, -3.923610657735e-01, 1.797693134862e+308, 1.0107e+01, 5.6187e-01, + 2DIAGNOSTIC, 8, -3.923610278802e-01, 1.797693134862e+308, 1.0788e+01, 6.8028e-01, + 2DIAGNOSTIC, 9, -3.923605206260e-01, 1.797693134862e+308, 1.1415e+01, 6.2697e-01, + 2DIAGNOSTIC, 10, -3.923602798436e-01, 1.520640294632e-05, 1.1939e+01, 5.2437e-01, + 2DIAGNOSTIC, 11, -3.923600667986e-01, 2.692633454607e-06, 1.2458e+01, 5.1905e-01, + 2DIAGNOSTIC, 12, -3.923603226930e-01, 2.459034713007e-06, 1.3001e+01, 5.4253e-01, + 2DIAGNOSTIC, 13, -3.923603754326e-01, 2.272851229820e-06, 1.3621e+01, 6.1999e-01, + 2DIAGNOSTIC, 14, -3.923602170405e-01, 2.133224208611e-06, 1.4253e+01, 6.3205e-01, + 2DIAGNOSTIC, 15, -3.923601082036e-01, 2.002469989409e-06, 1.4861e+01, 6.0831e-01, + 2DIAGNOSTIC, 16, -3.923601709254e-01, 1.905569422783e-06, 1.5641e+01, 7.8013e-01, + 2DIAGNOSTIC, 17, -3.923599313661e-01, 1.809700753405e-06, 1.6251e+01, 6.1012e-01, + 2DIAGNOSTIC, 18, -3.923598212671e-01, 1.724724755320e-06, 1.6821e+01, 5.7027e-01, + 2DIAGNOSTIC, 19, -3.923597002490e-01, 1.629165784965e-06, 1.7330e+01, 5.0876e-01, + 2DIAGNOSTIC, 20, -3.923595928568e-01, 1.535120808381e-06, 1.7868e+01, 5.3810e-01, + 2DIAGNOSTIC, 21, -3.923594917422e-01, 1.444039850251e-06, 1.8414e+01, 5.4541e-01, + 2DIAGNOSTIC, 22, -3.923595209112e-01, 1.377186021674e-06, 1.9085e+01, 6.7144e-01, + 2DIAGNOSTIC, 23, -3.923593901192e-01, 1.320234948220e-06, 1.9690e+01, 6.0445e-01, + 2DIAGNOSTIC, 24, -3.923592558211e-01, 1.265244612463e-06, 2.0298e+01, 6.0807e-01, + 2DIAGNOSTIC, 25, -3.923591227328e-01, 1.213264156912e-06, 2.0770e+01, 4.7280e-01, + 2DIAGNOSTIC, 26, -3.923589949922e-01, 1.169191025885e-06, 2.1248e+01, 4.7760e-01, + 2DIAGNOSTIC, 27, -3.923591574738e-01, 1.131432753806e-06, 2.1766e+01, 5.1807e-01, + 2DIAGNOSTIC, 28, -3.923593349013e-01, 1.102385421121e-06, 2.2304e+01, 5.3797e-01, + 2DIAGNOSTIC, 29, -3.923593971110e-01, 1.077064748292e-06, 2.2844e+01, 5.4031e-01, + 2DIAGNOSTIC, 30, -3.923595014222e-01, 1.055411470330e-06, 2.3443e+01, 5.9885e-01, + 2DIAGNOSTIC, 31, -3.923595068599e-01, 1.033341942347e-06, 2.4066e+01, 6.2246e-01, + 2DIAGNOSTIC, 32, -3.923590897166e-01, 1.003167957488e-06, 2.4614e+01, 5.4815e-01, + Elapsed time (stage 0): 2.4970e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.302121046753e-01, 1.797693134862e+308, 1.8527e-01, 1.8527e-01, + 2DIAGNOSTIC, 2, -6.314918523578e-01, 1.797693134862e+308, 1.8725e-01, 1.9791e-03, + 2DIAGNOSTIC, 3, -6.327222834348e-01, 1.797693134862e+308, 1.8917e-01, 1.9181e-03, + 2DIAGNOSTIC, 4, -6.337326471098e-01, 1.797693134862e+308, 1.9107e-01, 1.9040e-03, + 2DIAGNOSTIC, 5, -6.346214317736e-01, 1.797693134862e+308, 1.9307e-01, 1.9960e-03, + 2DIAGNOSTIC, 6, -6.355611582067e-01, 1.797693134862e+308, 1.9499e-01, 1.9190e-03, + 2DIAGNOSTIC, 7, -6.367998694808e-01, 1.797693134862e+308, 1.9689e-01, 1.9031e-03, + 2DIAGNOSTIC, 8, -6.374867055529e-01, 1.797693134862e+308, 1.9899e-01, 2.1009e-03, + 2DIAGNOSTIC, 9, -6.378145253526e-01, 1.797693134862e+308, 2.0165e-01, 2.6579e-03, + 2DIAGNOSTIC, 10, -6.379547956163e-01, 8.179098526670e-04, 2.0376e-01, 2.1079e-03, + 2DIAGNOSTIC, 11, -6.380447919531e-01, 6.347552341380e-04, 2.0638e-01, 2.6181e-03, + 2DIAGNOSTIC, 12, -6.384567595957e-01, 4.874939095456e-04, 2.0905e-01, 2.6779e-03, + 2DIAGNOSTIC, 13, -6.385148757753e-01, 3.625532256664e-04, 2.1120e-01, 2.1441e-03, + 2DIAGNOSTIC, 14, -6.386660433235e-01, 2.599882864476e-04, 2.1364e-01, 2.4450e-03, + 2DIAGNOSTIC, 15, -6.387359602737e-01, 1.761428172335e-04, 2.1585e-01, 2.2068e-03, + 2DIAGNOSTIC, 16, -6.386476143002e-01, 1.099473087314e-04, 2.1843e-01, 2.5830e-03, + 2DIAGNOSTIC, 17, -6.387875427641e-01, 7.745216171685e-05, 2.2158e-01, 3.1509e-03, + 2DIAGNOSTIC, 18, -6.387882978040e-01, 5.832810200832e-05, 2.2408e-01, 2.4991e-03, + 2DIAGNOSTIC, 19, -6.387912897891e-01, 4.378000848795e-05, 2.2641e-01, 2.3232e-03, + 2DIAGNOSTIC, 20, -6.387931141538e-01, 3.004325513253e-05, 2.2889e-01, 2.4810e-03, + 2DIAGNOSTIC, 21, -6.387959186733e-01, 1.677226788625e-05, 2.3122e-01, 2.3332e-03, + 2DIAGNOSTIC, 22, -6.386669250361e-01, 9.012041614201e-06, 2.3421e-01, 2.9931e-03, + 2DIAGNOSTIC, 23, -6.386697672473e-01, 2.369904039873e-06, 2.3770e-01, 3.4902e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.403695324877e-01, 1.797693134862e+308, 4.4616e-01, 2.0846e-01, + 2DIAGNOSTIC, 2, -5.409820919140e-01, 1.797693134862e+308, 4.5965e-01, 1.3490e-02, + 2DIAGNOSTIC, 3, -5.415831702268e-01, 1.797693134862e+308, 4.7328e-01, 1.3630e-02, + 2DIAGNOSTIC, 4, -5.420680241387e-01, 1.797693134862e+308, 4.8715e-01, 1.3870e-02, + 2DIAGNOSTIC, 5, -5.422846612981e-01, 1.797693134862e+308, 5.0112e-01, 1.3970e-02, + 2DIAGNOSTIC, 6, -5.425076901806e-01, 1.797693134862e+308, 5.1773e-01, 1.6606e-02, + 2DIAGNOSTIC, 7, -5.430092667009e-01, 1.797693134862e+308, 5.3890e-01, 2.1175e-02, + 2DIAGNOSTIC, 8, -5.432163638400e-01, 1.797693134862e+308, 5.5307e-01, 1.4168e-02, + 2DIAGNOSTIC, 9, -5.434018073465e-01, 1.797693134862e+308, 5.6693e-01, 1.3861e-02, + 2DIAGNOSTIC, 10, -5.436233962150e-01, 3.695475121259e-04, 5.8295e-01, 1.6017e-02, + 2DIAGNOSTIC, 11, -5.436957782421e-01, 2.863214094436e-04, 6.0073e-01, 1.7788e-02, + 2DIAGNOSTIC, 12, -5.437242836189e-01, 2.189474902021e-04, 6.2550e-01, 2.4763e-02, + 2DIAGNOSTIC, 13, -5.437693018626e-01, 1.680581249659e-04, 6.3941e-01, 1.3915e-02, + 2DIAGNOSTIC, 14, -5.439429389614e-01, 1.340470944097e-04, 6.5449e-01, 1.5076e-02, + 2DIAGNOSTIC, 15, -5.441366626567e-01, 1.066768462950e-04, 6.6828e-01, 1.3789e-02, + 2DIAGNOSTIC, 16, -5.442676172005e-01, 8.428044311302e-05, 6.8210e-01, 1.3824e-02, + 2DIAGNOSTIC, 17, -5.443457461770e-01, 7.481112525308e-05, 6.9632e-01, 1.4219e-02, + 2DIAGNOSTIC, 18, -5.443753905088e-01, 6.652822038677e-05, 7.1066e-01, 1.4337e-02, + 2DIAGNOSTIC, 19, -5.444060860449e-01, 5.888924723976e-05, 7.2447e-01, 1.3808e-02, + 2DIAGNOSTIC, 20, -5.444461942343e-01, 5.342415534107e-05, 7.4395e-01, 1.9480e-02, + 2DIAGNOSTIC, 21, -5.444611093295e-01, 4.580339377351e-05, 7.5777e-01, 1.3823e-02, + 2DIAGNOSTIC, 22, -5.444674507417e-01, 3.563270328825e-05, 7.7201e-01, 1.4238e-02, + 2DIAGNOSTIC, 23, -5.447446651483e-01, 3.045981261530e-05, 7.8587e-01, 1.3859e-02, + 2DIAGNOSTIC, 24, -5.451121977043e-01, 3.454357635249e-05, 8.0715e-01, 2.1288e-02, + 2DIAGNOSTIC, 25, -5.451936938969e-01, 4.072302367706e-05, 8.2520e-01, 1.8049e-02, + 2DIAGNOSTIC, 26, -5.451849426631e-01, 4.527011291908e-05, 8.4127e-01, 1.6065e-02, + 2DIAGNOSTIC, 27, -5.451752045517e-01, 4.677541021273e-05, 8.5735e-01, 1.6078e-02, + 2DIAGNOSTIC, 28, -5.451507054790e-01, 4.388055238300e-05, 8.7132e-01, 1.3977e-02, + 2DIAGNOSTIC, 29, -5.451406488332e-01, 3.737792558865e-05, 8.8558e-01, 1.4255e-02, + 2DIAGNOSTIC, 30, -5.451455352587e-01, 2.868605881490e-05, 8.9924e-01, 1.3664e-02, + 2DIAGNOSTIC, 31, -5.451551796655e-01, 1.849687614493e-05, 9.1621e-01, 1.6972e-02, + 2DIAGNOSTIC, 32, -5.451626628842e-01, 7.479362990108e-06, 9.3178e-01, 1.5566e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.559966933059e-01, 1.797693134862e+308, 1.3055e+00, 3.7369e-01, + 2DIAGNOSTIC, 2, -4.568475586984e-01, 1.797693134862e+308, 1.4060e+00, 1.0056e-01, + 2DIAGNOSTIC, 3, -4.574298865883e-01, 1.797693134862e+308, 1.5071e+00, 1.0104e-01, + 2DIAGNOSTIC, 4, -4.576705774836e-01, 1.797693134862e+308, 1.6212e+00, 1.1411e-01, + 2DIAGNOSTIC, 5, -4.577185471512e-01, 1.797693134862e+308, 1.7496e+00, 1.2844e-01, + 2DIAGNOSTIC, 6, -4.576927578221e-01, 1.797693134862e+308, 1.8783e+00, 1.2864e-01, + 2DIAGNOSTIC, 7, -4.576875005082e-01, 1.797693134862e+308, 1.9926e+00, 1.1430e-01, + 2DIAGNOSTIC, 8, -4.576863694822e-01, 1.797693134862e+308, 2.1600e+00, 1.6741e-01, + 2DIAGNOSTIC, 9, -4.576880414915e-01, 1.797693134862e+308, 2.2887e+00, 1.2877e-01, + 2DIAGNOSTIC, 10, -4.576879004158e-01, 1.653007118857e-04, 2.4039e+00, 1.1513e-01, + 2DIAGNOSTIC, 11, -4.576873338988e-01, 6.285182249197e-05, 2.5174e+00, 1.1358e-01, + 2DIAGNOSTIC, 12, -4.576867660949e-01, 1.547158830735e-05, 2.6168e+00, 9.9368e-02, + 2DIAGNOSTIC, 13, -4.576859253228e-01, 1.694935718985e-06, 2.7020e+00, 8.5150e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.928982109307e-01, 1.797693134862e+308, 3.8875e+00, 1.1856e+00, + 2DIAGNOSTIC, 2, -3.930163156588e-01, 1.797693134862e+308, 4.4939e+00, 6.0636e-01, + 2DIAGNOSTIC, 3, -3.930658011670e-01, 1.797693134862e+308, 5.7621e+00, 1.2681e+00, + 2DIAGNOSTIC, 4, -3.930663024109e-01, 1.797693134862e+308, 6.5234e+00, 7.6133e-01, + 2DIAGNOSTIC, 5, -3.930656874839e-01, 1.797693134862e+308, 7.1739e+00, 6.5049e-01, + 2DIAGNOSTIC, 6, -3.930652611147e-01, 1.797693134862e+308, 7.7701e+00, 5.9626e-01, + 2DIAGNOSTIC, 7, -3.930653996168e-01, 1.797693134862e+308, 8.5897e+00, 8.1953e-01, + 2DIAGNOSTIC, 8, -3.930654559234e-01, 1.797693134862e+308, 9.3581e+00, 7.6841e-01, + 2DIAGNOSTIC, 9, -3.930653935656e-01, 1.797693134862e+308, 9.9998e+00, 6.4177e-01, + 2DIAGNOSTIC, 10, -3.930650647803e-01, 1.829321427367e-05, 1.0690e+01, 6.9006e-01, + 2DIAGNOSTIC, 11, -3.930650067213e-01, 6.002877854641e-06, 1.1295e+01, 6.0495e-01, + 2DIAGNOSTIC, 12, -3.930648641727e-01, 2.504220091792e-06, 1.1987e+01, 6.9175e-01, + 2DIAGNOSTIC, 13, -3.930647468095e-01, 2.301288931639e-06, 1.2665e+01, 6.7863e-01, + 2DIAGNOSTIC, 14, -3.930649103268e-01, 2.175824550157e-06, 1.3249e+01, 5.8370e-01, + 2DIAGNOSTIC, 15, -3.930649042086e-01, 2.046549862342e-06, 1.3938e+01, 6.8918e-01, + 2DIAGNOSTIC, 16, -3.930652330624e-01, 1.935770439776e-06, 1.4686e+01, 7.4753e-01, + 2DIAGNOSTIC, 17, -3.930652230303e-01, 1.847826082257e-06, 1.5414e+01, 7.2869e-01, + 2DIAGNOSTIC, 18, -3.930649932077e-01, 1.764963373153e-06, 1.6106e+01, 6.9162e-01, + 2DIAGNOSTIC, 19, -3.930649268124e-01, 1.686743290201e-06, 1.6702e+01, 5.9637e-01, + 2DIAGNOSTIC, 20, -3.930649116613e-01, 1.602578382665e-06, 1.7310e+01, 6.0783e-01, + 2DIAGNOSTIC, 21, -3.930649926079e-01, 1.525949181680e-06, 1.7880e+01, 5.6942e-01, + 2DIAGNOSTIC, 22, -3.930649878212e-01, 1.450450552033e-06, 1.8549e+01, 6.6988e-01, + 2DIAGNOSTIC, 23, -3.930647268925e-01, 1.369379758663e-06, 1.9187e+01, 6.3792e-01, + 2DIAGNOSTIC, 24, -3.930648697823e-01, 1.306023969451e-06, 1.9853e+01, 6.6520e-01, + 2DIAGNOSTIC, 25, -3.930648209254e-01, 1.247379985775e-06, 2.0400e+01, 5.4747e-01, + 2DIAGNOSTIC, 26, -3.930648351910e-01, 1.204978357650e-06, 2.1102e+01, 7.0175e-01, + 2DIAGNOSTIC, 27, -3.930647561893e-01, 1.165280906788e-06, 2.1834e+01, 7.3261e-01, + 2DIAGNOSTIC, 28, -3.930646400025e-01, 1.120920297783e-06, 2.2507e+01, 6.7276e-01, + 2DIAGNOSTIC, 29, -3.930643934269e-01, 1.073315643967e-06, 2.3117e+01, 6.1001e-01, + 2DIAGNOSTIC, 30, -3.930644535139e-01, 1.032149824942e-06, 2.3656e+01, 5.3925e-01, + 2DIAGNOSTIC, 31, -3.930646965509e-01, 1.003702140498e-06, 2.4258e+01, 6.0149e-01, + Elapsed time (stage 1): 2.4641e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.033180968155e-01, 1.797693134862e+308, 2.5385e-01, 2.5385e-01, + 1DIAGNOSTIC, 2, -9.129998465187e-01, 1.797693134862e+308, 3.5365e-01, 9.9804e-02, + 1DIAGNOSTIC, 3, -9.211053237667e-01, 1.797693134862e+308, 4.5074e-01, 9.7092e-02, + 1DIAGNOSTIC, 4, -9.277130771387e-01, 1.797693134862e+308, 5.4565e-01, 9.4908e-02, + 1DIAGNOSTIC, 5, -9.329710771137e-01, 1.797693134862e+308, 6.4104e-01, 9.5391e-02, + 1DIAGNOSTIC, 6, -9.366805363387e-01, 1.797693134862e+308, 7.3684e-01, 9.5794e-02, + 1DIAGNOSTIC, 7, -9.399766870108e-01, 1.797693134862e+308, 8.3436e-01, 9.7522e-02, + 1DIAGNOSTIC, 8, -9.428583038152e-01, 1.797693134862e+308, 9.2974e-01, 9.5381e-02, + 1DIAGNOSTIC, 9, -9.454510932111e-01, 1.797693134862e+308, 1.0265e+00, 9.6748e-02, + 1DIAGNOSTIC, 10, -9.478331318627e-01, 2.887000986524e-03, 1.1212e+00, 9.4695e-02, + 1DIAGNOSTIC, 11, -9.499782743231e-01, 2.161783975838e-03, 1.2141e+00, 9.2874e-02, + 1DIAGNOSTIC, 12, -9.517641153533e-01, 1.653158249563e-03, 1.3153e+00, 1.0124e-01, + 1DIAGNOSTIC, 13, -9.532758712388e-01, 1.296981474950e-03, 1.4089e+00, 9.3565e-02, + 1DIAGNOSTIC, 14, -9.544666739364e-01, 1.041772728487e-03, 1.5064e+00, 9.7496e-02, + 1DIAGNOSTIC, 15, -9.554887499180e-01, 8.518462688915e-04, 1.6021e+00, 9.5702e-02, + 1DIAGNOSTIC, 16, -9.563395295015e-01, 6.932934469115e-04, 1.6987e+00, 9.6619e-02, + 1DIAGNOSTIC, 17, -9.570156971630e-01, 5.598513290815e-04, 1.7945e+00, 9.5827e-02, + 1DIAGNOSTIC, 18, -9.575583371119e-01, 4.467346750962e-04, 1.8926e+00, 9.8068e-02, + 1DIAGNOSTIC, 19, -9.580248624822e-01, 3.524981962795e-04, 1.9853e+00, 9.2692e-02, + 1DIAGNOSTIC, 20, -9.583022913372e-01, 2.747870709595e-04, 2.0831e+00, 9.7821e-02, + 1DIAGNOSTIC, 21, -9.586467586031e-01, 2.144567882311e-04, 2.1852e+00, 1.0213e-01, + 1DIAGNOSTIC, 22, -9.587641386094e-01, 1.654746482162e-04, 2.2813e+00, 9.6059e-02, + 1DIAGNOSTIC, 23, -9.587121046652e-01, 1.243518811696e-04, 2.3849e+00, 1.0366e-01, + 1DIAGNOSTIC, 24, -9.584751810631e-01, 8.699858694324e-05, 2.4867e+00, 1.0172e-01, + 1DIAGNOSTIC, 25, -9.585891563557e-01, 5.819678779340e-05, 2.5851e+00, 9.8439e-02, + 1DIAGNOSTIC, 26, -9.583874844258e-01, 3.355865429090e-05, 2.6828e+00, 9.7709e-02, + 1DIAGNOSTIC, 27, -9.584799141701e-01, 1.620819894801e-05, 2.7839e+00, 1.0107e-01, + 1DIAGNOSTIC, 28, -9.582854931153e-01, 2.358384126065e-06, 2.8886e+00, 1.0470e-01, + 1DIAGNOSTIC, 29, -9.583824675231e-01, -4.759748407586e-06, 2.9878e+00, 9.9184e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.145640945073e-01, 1.797693134862e+308, 3.8290e+00, 8.4122e-01, + 1DIAGNOSTIC, 2, -9.188203064025e-01, 1.797693134862e+308, 4.5008e+00, 6.7185e-01, + 1DIAGNOSTIC, 3, -9.229573892833e-01, 1.797693134862e+308, 5.1579e+00, 6.5708e-01, + 1DIAGNOSTIC, 4, -9.262611621744e-01, 1.797693134862e+308, 5.8191e+00, 6.6122e-01, + 1DIAGNOSTIC, 5, -9.290828015931e-01, 1.797693134862e+308, 6.4808e+00, 6.6166e-01, + 1DIAGNOSTIC, 6, -9.313426944895e-01, 1.797693134862e+308, 7.1443e+00, 6.6355e-01, + 1DIAGNOSTIC, 7, -9.332079171845e-01, 1.797693134862e+308, 7.8084e+00, 6.6409e-01, + 1DIAGNOSTIC, 8, -9.346949597012e-01, 1.797693134862e+308, 8.4598e+00, 6.5141e-01, + 1DIAGNOSTIC, 9, -9.359696707232e-01, 1.797693134862e+308, 9.0982e+00, 6.3836e-01, + 1DIAGNOSTIC, 10, -9.370956196076e-01, 1.514566734259e-03, 9.7471e+00, 6.4890e-01, + 1DIAGNOSTIC, 11, -9.379951542153e-01, 1.150380703854e-03, 1.0416e+01, 6.6841e-01, + 1DIAGNOSTIC, 12, -9.387960325197e-01, 8.715574954614e-04, 1.1087e+01, 6.7101e-01, + 1DIAGNOSTIC, 13, -9.395123292096e-01, 6.702880098357e-04, 1.1746e+01, 6.5985e-01, + 1DIAGNOSTIC, 14, -9.401496566790e-01, 5.221709124723e-04, 1.2417e+01, 6.7066e-01, + 1DIAGNOSTIC, 15, -9.407315949470e-01, 4.148659539042e-04, 1.3079e+01, 6.6220e-01, + 1DIAGNOSTIC, 16, -9.412488953000e-01, 3.354919002381e-04, 1.3742e+01, 6.6304e-01, + 1DIAGNOSTIC, 17, -9.417360986431e-01, 2.765250719778e-04, 1.4415e+01, 6.7238e-01, + 1DIAGNOSTIC, 18, -9.421658966177e-01, 2.308122781287e-04, 1.5101e+01, 6.8608e-01, + 1DIAGNOSTIC, 19, -9.425600075169e-01, 1.951055156858e-04, 1.5780e+01, 6.7901e-01, + 1DIAGNOSTIC, 20, -9.429170449193e-01, 1.673257691065e-04, 1.6477e+01, 6.9732e-01, + 1DIAGNOSTIC, 21, -9.432436035695e-01, 1.443082561876e-04, 1.7144e+01, 6.6704e-01, + 1DIAGNOSTIC, 22, -9.435329706679e-01, 1.249404364556e-04, 1.7809e+01, 6.6536e-01, + 1DIAGNOSTIC, 23, -9.437937642029e-01, 1.084660528619e-04, 1.8473e+01, 6.6339e-01, + 1DIAGNOSTIC, 24, -9.440444937423e-01, 9.443966537731e-05, 1.9131e+01, 6.5779e-01, + 1DIAGNOSTIC, 25, -9.442704564869e-01, 8.249072419877e-05, 1.9792e+01, 6.6140e-01, + 1DIAGNOSTIC, 26, -9.444790481792e-01, 7.219221637464e-05, 2.0457e+01, 6.6514e-01, + 1DIAGNOSTIC, 27, -9.446685034302e-01, 6.349188373909e-05, 2.1119e+01, 6.6231e-01, + 1DIAGNOSTIC, 28, -9.448461411787e-01, 5.604126348643e-05, 2.1780e+01, 6.6100e-01, + 1DIAGNOSTIC, 29, -9.450093075998e-01, 4.967658226460e-05, 2.2430e+01, 6.4996e-01, + 1DIAGNOSTIC, 30, -9.451554450126e-01, 4.416402406968e-05, 2.3067e+01, 6.3651e-01, + 1DIAGNOSTIC, 31, -9.452941528241e-01, 3.942498360832e-05, 2.3698e+01, 6.3072e-01, + 1DIAGNOSTIC, 32, -9.454223441026e-01, 3.525258160354e-05, 2.4357e+01, 6.5963e-01, + 1DIAGNOSTIC, 33, -9.455460637514e-01, 3.156938986267e-05, 2.4997e+01, 6.3968e-01, + 1DIAGNOSTIC, 34, -9.456562185667e-01, 2.837278949455e-05, 2.5640e+01, 6.4250e-01, + 1DIAGNOSTIC, 35, -9.457612129348e-01, 2.558206568515e-05, 2.6301e+01, 6.6176e-01, + 1DIAGNOSTIC, 36, -9.458650789107e-01, 2.319799094992e-05, 2.6958e+01, 6.5686e-01, + 1DIAGNOSTIC, 37, -9.459587935643e-01, 2.110548464738e-05, 2.7624e+01, 6.6542e-01, + 1DIAGNOSTIC, 38, -9.460447312231e-01, 1.926810020780e-05, 2.8288e+01, 6.6434e-01, + 1DIAGNOSTIC, 39, -9.461287005188e-01, 1.766484643818e-05, 2.8949e+01, 6.6097e-01, + 1DIAGNOSTIC, 40, -9.462062739442e-01, 1.620605502359e-05, 2.9607e+01, 6.5840e-01, + 1DIAGNOSTIC, 41, -9.462783434237e-01, 1.488349010152e-05, 3.0271e+01, 6.6377e-01, + 1DIAGNOSTIC, 42, -9.463491607201e-01, 1.369189987618e-05, 3.0936e+01, 6.6468e-01, + 1DIAGNOSTIC, 43, -9.464119727371e-01, 1.261661486401e-05, 3.1601e+01, 6.6504e-01, + 1DIAGNOSTIC, 44, -9.464735041605e-01, 1.162107225498e-05, 3.2256e+01, 6.5561e-01, + 1DIAGNOSTIC, 45, -9.465305826701e-01, 1.070190300469e-05, 3.2917e+01, 6.6018e-01, + 1DIAGNOSTIC, 46, -9.465840801083e-01, 9.888012138075e-06, 3.3577e+01, 6.6073e-01, + 1DIAGNOSTIC, 47, -9.466307607707e-01, 9.120336505065e-06, 3.4227e+01, 6.4939e-01, + 1DIAGNOSTIC, 48, -9.466714885272e-01, 8.363537367283e-06, 3.4882e+01, 6.5568e-01, + 1DIAGNOSTIC, 49, -9.467152638394e-01, 7.678993193865e-06, 3.5539e+01, 6.5646e-01, + 1DIAGNOSTIC, 50, -9.467567063673e-01, 7.057792597447e-06, 3.6247e+01, 7.0802e-01, + 1DIAGNOSTIC, 51, -9.467963706854e-01, 6.497994081915e-06, 3.6921e+01, 6.7377e-01, + 1DIAGNOSTIC, 52, -9.468299931767e-01, 5.996155779751e-06, 3.7586e+01, 6.6493e-01, + 1DIAGNOSTIC, 53, -9.468630455908e-01, 5.537102672069e-06, 3.8252e+01, 6.6614e-01, + 1DIAGNOSTIC, 54, -9.468885056409e-01, 5.101257362815e-06, 3.8917e+01, 6.6549e-01, + 1DIAGNOSTIC, 55, -9.469198917538e-01, 4.727765154131e-06, 3.9570e+01, 6.5285e-01, + 1DIAGNOSTIC, 56, -9.469490445373e-01, 4.408665415585e-06, 4.0219e+01, 6.4860e-01, + 1DIAGNOSTIC, 57, -9.469811230266e-01, 4.144531609171e-06, 4.0861e+01, 6.4193e-01, + 1DIAGNOSTIC, 58, -9.470071824406e-01, 3.887635704150e-06, 4.1501e+01, 6.4010e-01, + 1DIAGNOSTIC, 59, -9.470309129994e-01, 3.660232463582e-06, 4.2139e+01, 6.3823e-01, + 1DIAGNOSTIC, 60, -9.470537056842e-01, 3.459634176087e-06, 4.2785e+01, 6.4603e-01, + 1DIAGNOSTIC, 61, -9.470732404749e-01, 3.272754388037e-06, 4.3445e+01, 6.6005e-01, + 1DIAGNOSTIC, 62, -9.470930110869e-01, 3.083408748852e-06, 4.4114e+01, 6.6876e-01, + 1DIAGNOSTIC, 63, -9.471114956636e-01, 2.897341932543e-06, 4.4754e+01, 6.4001e-01, + 1DIAGNOSTIC, 64, -9.471307967741e-01, 2.695192867518e-06, 4.5431e+01, 6.7774e-01, + 1DIAGNOSTIC, 65, -9.471495337164e-01, 2.517683666138e-06, 4.6104e+01, 6.7240e-01, + 1DIAGNOSTIC, 66, -9.471661300228e-01, 2.356190236783e-06, 4.6764e+01, 6.5965e-01, + 1DIAGNOSTIC, 67, -9.471814813013e-01, 2.230368246526e-06, 4.7463e+01, 6.9972e-01, + 1DIAGNOSTIC, 68, -9.471968865743e-01, 2.121002795841e-06, 4.8128e+01, 6.6465e-01, + 1DIAGNOSTIC, 69, -9.472111046387e-01, 2.019087981274e-06, 4.8783e+01, 6.5512e-01, + 1DIAGNOSTIC, 70, -9.472238703177e-01, 1.921307557716e-06, 4.9455e+01, 6.7197e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.022132676913e-01, 1.797693134862e+308, 5.5123e+01, 5.6676e+00, + 1DIAGNOSTIC, 2, -9.054661730848e-01, 1.797693134862e+308, 6.0437e+01, 5.3140e+00, + 1DIAGNOSTIC, 3, -9.084249627699e-01, 1.797693134862e+308, 6.5823e+01, 5.3861e+00, + 1DIAGNOSTIC, 4, -9.110396593308e-01, 1.797693134862e+308, 7.1184e+01, 5.3608e+00, + 1DIAGNOSTIC, 5, -9.133699326666e-01, 1.797693134862e+308, 7.6561e+01, 5.3770e+00, + 1DIAGNOSTIC, 6, -9.154375278810e-01, 1.797693134862e+308, 8.1901e+01, 5.3402e+00, + 1DIAGNOSTIC, 7, -9.173027562778e-01, 1.797693134862e+308, 8.7221e+01, 5.3198e+00, + 1DIAGNOSTIC, 8, -9.189511790485e-01, 1.797693134862e+308, 9.2563e+01, 5.3422e+00, + 1DIAGNOSTIC, 9, -9.205697155419e-01, 1.797693134862e+308, 9.7896e+01, 5.3329e+00, + 1DIAGNOSTIC, 10, -9.218977300400e-01, 1.357702726214e-03, 1.0321e+02, 5.3153e+00, + 1DIAGNOSTIC, 11, -9.231549208866e-01, 1.106738874443e-03, 1.0854e+02, 5.3254e+00, + 1DIAGNOSTIC, 12, -9.241318987873e-01, 9.070673626136e-04, 1.1388e+02, 5.3421e+00, + 1DIAGNOSTIC, 13, -9.250968593778e-01, 7.493175550572e-04, 1.1921e+02, 5.3284e+00, + 1DIAGNOSTIC, 14, -9.258303354850e-01, 6.196427387077e-04, 1.2455e+02, 5.3397e+00, + 1DIAGNOSTIC, 15, -9.264866130360e-01, 5.120088821997e-04, 1.2990e+02, 5.3535e+00, + 1DIAGNOSTIC, 16, -9.269662770122e-01, 4.199053837249e-04, 1.3527e+02, 5.3664e+00, + 1DIAGNOSTIC, 17, -9.275402219542e-01, 3.442243025616e-04, 1.4065e+02, 5.3856e+00, + 1DIAGNOSTIC, 18, -9.279564464405e-01, 2.803302746834e-04, 1.4599e+02, 5.3411e+00, + 1DIAGNOSTIC, 19, -9.283572046739e-01, 2.299026364138e-04, 1.5136e+02, 5.3656e+00, + 1DIAGNOSTIC, 20, -9.287367775087e-01, 1.894128500019e-04, 1.5670e+02, 5.3430e+00, + 1DIAGNOSTIC, 21, -9.291028223475e-01, 1.589518454399e-04, 1.6207e+02, 5.3698e+00, + 1DIAGNOSTIC, 22, -9.294523010121e-01, 1.349125315606e-04, 1.6740e+02, 5.3288e+00, + 1DIAGNOSTIC, 23, -9.297906610280e-01, 1.177760695010e-04, 1.7279e+02, 5.3854e+00, + 1DIAGNOSTIC, 24, -9.301158647193e-01, 1.046116294168e-04, 1.7814e+02, 5.3517e+00, + 1DIAGNOSTIC, 25, -9.304288709530e-01, 9.465757134398e-05, 1.8353e+02, 5.3946e+00, + 1DIAGNOSTIC, 26, -9.307323259043e-01, 8.581982762953e-05, 1.8888e+02, 5.3496e+00, + 1DIAGNOSTIC, 27, -9.310269104349e-01, 7.948315012175e-05, 1.9426e+02, 5.3774e+00, + 1DIAGNOSTIC, 28, -9.313100168764e-01, 7.381388148894e-05, 1.9963e+02, 5.3709e+00, + 1DIAGNOSTIC, 29, -9.315734271935e-01, 6.863999942106e-05, 2.0502e+02, 5.3859e+00, + 1DIAGNOSTIC, 30, -9.318221226603e-01, 6.379567566854e-05, 2.1036e+02, 5.3405e+00, + 1DIAGNOSTIC, 31, -9.320562503950e-01, 5.921364345026e-05, 2.1575e+02, 5.3941e+00, + 1DIAGNOSTIC, 32, -9.322824319416e-01, 5.487204329239e-05, 2.2109e+02, 5.3380e+00, + 1DIAGNOSTIC, 33, -9.324977504480e-01, 5.078054916902e-05, 2.2645e+02, 5.3565e+00, + 1DIAGNOSTIC, 34, -9.327034766646e-01, 4.694496090418e-05, 2.3176e+02, 5.3179e+00, + 1DIAGNOSTIC, 35, -9.328932603499e-01, 4.332066652749e-05, 2.3714e+02, 5.3808e+00, + 1DIAGNOSTIC, 36, -9.330678867138e-01, 3.989752846093e-05, 2.4249e+02, 5.3419e+00, + 1DIAGNOSTIC, 37, -9.332236561923e-01, 3.664058909047e-05, 2.4787e+02, 5.3808e+00, + 1DIAGNOSTIC, 38, -9.333681300014e-01, 3.356320182429e-05, 2.5323e+02, 5.3643e+00, + 1DIAGNOSTIC, 39, -9.335006760864e-01, 3.060489719622e-05, 2.5861e+02, 5.3745e+00, + 1DIAGNOSTIC, 40, -9.336233604591e-01, 2.777053686256e-05, 2.6396e+02, 5.3590e+00, + 1DIAGNOSTIC, 41, -9.337368558151e-01, 2.507210682602e-05, 2.6936e+02, 5.3910e+00, + 1DIAGNOSTIC, 42, -9.338405977797e-01, 2.256517271954e-05, 2.7470e+02, 5.3458e+00, + 1DIAGNOSTIC, 43, -9.339369961917e-01, 2.028944527977e-05, 2.8007e+02, 5.3664e+00, + 1DIAGNOSTIC, 44, -9.340255128808e-01, 1.827551545285e-05, 2.8540e+02, 5.3329e+00, + 1DIAGNOSTIC, 45, -9.341104654220e-01, 1.652268915975e-05, 2.9076e+02, 5.3573e+00, + 1DIAGNOSTIC, 46, -9.341884345940e-01, 1.499694938347e-05, 2.9612e+02, 5.3615e+00, + 1DIAGNOSTIC, 47, -9.342606177151e-01, 1.363614413435e-05, 3.0150e+02, 5.3827e+00, + 1DIAGNOSTIC, 48, -9.343310498298e-01, 1.244793581328e-05, 3.0689e+02, 5.3868e+00, + 1DIAGNOSTIC, 49, -9.343966681984e-01, 1.140372363506e-05, 3.1226e+02, 5.3711e+00, + 1DIAGNOSTIC, 50, -9.344571944272e-01, 1.047972626133e-05, 3.1762e+02, 5.3615e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.006317659580e-01, 1.797693134862e+308, 3.6172e+02, 4.4096e+01, + 1DIAGNOSTIC, 2, -9.019438617862e-01, 1.797693134862e+308, 4.0544e+02, 4.3722e+01, + 1DIAGNOSTIC, 3, -9.034262896409e-01, 1.797693134862e+308, 4.4871e+02, 4.3266e+01, + 1DIAGNOSTIC, 4, -9.046674720773e-01, 1.797693134862e+308, 4.9201e+02, 4.3309e+01, + 1DIAGNOSTIC, 5, -9.059290376746e-01, 1.797693134862e+308, 5.3530e+02, 4.3287e+01, + 1DIAGNOSTIC, 6, -9.071399576321e-01, 1.797693134862e+308, 5.7852e+02, 4.3217e+01, + 1DIAGNOSTIC, 7, -9.083220279755e-01, 1.797693134862e+308, 6.2171e+02, 4.3190e+01, + 1DIAGNOSTIC, 8, -9.094648642656e-01, 1.797693134862e+308, 6.6489e+02, 4.3181e+01, + 1DIAGNOSTIC, 9, -9.105383101325e-01, 1.797693134862e+308, 7.0815e+02, 4.3263e+01, + 1DIAGNOSTIC, 10, -9.113999455647e-01, 7.690085574931e-04, 7.5143e+02, 4.3282e+01, + 1DIAGNOSTIC, 11, -9.120344935086e-01, 6.588796228263e-04, 7.9481e+02, 4.3381e+01, + 1DIAGNOSTIC, 12, -9.125152037414e-01, 5.545071184594e-04, 8.3808e+02, 4.3262e+01, + 1DIAGNOSTIC, 13, -9.128749764851e-01, 4.603333970040e-04, 8.8148e+02, 4.3403e+01, + 1DIAGNOSTIC, 14, -9.131287963716e-01, 3.710305125804e-04, 9.2483e+02, 4.3348e+01, + 1DIAGNOSTIC, 15, -9.132522225104e-01, 2.885534657620e-04, 9.6819e+02, 4.3368e+01, + 1DIAGNOSTIC, 16, -9.134348796805e-01, 2.171624619155e-04, 1.0115e+03, 4.3256e+01, + 1DIAGNOSTIC, 17, -9.135179767925e-01, 1.573577662395e-04, 1.0549e+03, 4.3476e+01, + 1DIAGNOSTIC, 18, -9.136820298809e-01, 1.122651531764e-04, 1.0983e+03, 4.3334e+01, + 1DIAGNOSTIC, 19, -9.137574546329e-01, 8.033457827560e-05, 1.1418e+03, 4.3534e+01, + 1DIAGNOSTIC, 20, -9.138344130813e-01, 5.882248572901e-05, 1.1855e+03, 4.3753e+01, + Elapsed time (stage 2): 1186 + + +Total elapsed time: 1236 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:10 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:10 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:12 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:17 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:21 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4997 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:21 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:24 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:24 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5043 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:24 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:27 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:27 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5088 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:27 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5097 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:27 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:32 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:34 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:34 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:35 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:36 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:38 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:38 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:39 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:40 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:42 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:42 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:52 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:03 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC007 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:03 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC007 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:03 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC007 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:04 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5810 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:05 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:05 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5930 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:07 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:07 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC007_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 67.433 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/logs/proc_func_18-03-2024-16091.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:13 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC007 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/QC/sub-PNC007_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC007* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 67.500 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC007_ses-01 +========================reprocessing without filter=================== +sub-PNC007_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC007 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC007 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC007 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC007 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:17 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:17 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:38:22 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:40:29 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:40:43 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.42 (mm) at sub-brick 0 +++ Max delta displ in automask = 0.13 (mm) at sub-brick 180 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:52:59 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:53:18 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:55:27 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:57:36 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:59:46 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.161 -1.415 2.116 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.6 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.125 -1.581 2.846 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.1 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:04:31 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:05:00 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x562aa4c3d6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [107.102, 64.7781, -108.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562aa4ab4730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562aa4c54320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x562aa4c40fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.8094, 126.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562aa4c46e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562aa5451230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x562aa544f5c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [107.102, 64.7781, -108.371] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562aa4c433f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562aa5f7b450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x562aa544dda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.8094, 126.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562aa4c4a360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562aa6775780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.129586094957e-01, 1.797693134862e+308, 4.0917e-02, 4.0917e-02, + 2DIAGNOSTIC, 2, -7.149145832461e-01, 1.797693134862e+308, 4.2149e-02, 1.2319e-03, + 2DIAGNOSTIC, 3, -7.177461754897e-01, 1.797693134862e+308, 4.3415e-02, 1.2660e-03, + 2DIAGNOSTIC, 4, -7.209847239215e-01, 1.797693134862e+308, 4.4643e-02, 1.2279e-03, + 2DIAGNOSTIC, 5, -7.230579941384e-01, 1.797693134862e+308, 4.5888e-02, 1.2450e-03, + 2DIAGNOSTIC, 6, -7.238714521611e-01, 1.797693134862e+308, 4.7369e-02, 1.4811e-03, + 2DIAGNOSTIC, 7, -7.250267722232e-01, 1.797693134862e+308, 4.8931e-02, 1.5619e-03, + 2DIAGNOSTIC, 8, -7.426521816940e-01, 1.797693134862e+308, 5.0446e-02, 1.5149e-03, + 2DIAGNOSTIC, 9, -7.439765835964e-01, 1.797693134862e+308, 5.2263e-02, 1.8170e-03, + 2DIAGNOSTIC, 10, -7.440699314941e-01, 2.974991879846e-03, 5.3746e-02, 1.4830e-03, + 2DIAGNOSTIC, 11, -7.449401141125e-01, 2.786861972278e-03, 5.5974e-02, 2.2290e-03, + 2DIAGNOSTIC, 12, -7.459893278415e-01, 2.475566581997e-03, 5.7484e-02, 1.5092e-03, + 2DIAGNOSTIC, 13, -7.464497849997e-01, 2.077212692797e-03, 5.8977e-02, 1.4930e-03, + 2DIAGNOSTIC, 14, -7.472780181430e-01, 1.658348933309e-03, 6.1175e-02, 2.1980e-03, + 2DIAGNOSTIC, 15, -7.477505724585e-01, 1.218028063703e-03, 6.2656e-02, 1.4811e-03, + 2DIAGNOSTIC, 16, -7.480395506907e-01, 7.535382985930e-04, 6.4141e-02, 1.4849e-03, + 2DIAGNOSTIC, 17, -7.485932166329e-01, 3.030262288230e-04, 6.5853e-02, 1.7128e-03, + 2DIAGNOSTIC, 18, -7.495928004687e-01, 2.743130918458e-04, 6.7558e-02, 1.7049e-03, + 2DIAGNOSTIC, 19, -7.508097948468e-01, 2.748250587947e-04, 6.9664e-02, 2.1060e-03, + 2DIAGNOSTIC, 20, -7.508241971847e-01, 2.514136840456e-04, 7.1350e-02, 1.6861e-03, + 2DIAGNOSTIC, 21, -7.512912105527e-01, 2.317287099769e-04, 7.2786e-02, 1.4360e-03, + 2DIAGNOSTIC, 22, -7.509850526584e-01, 2.053337360510e-04, 7.4237e-02, 1.4510e-03, + 2DIAGNOSTIC, 23, -7.512591920863e-01, 1.741143645351e-04, 7.5706e-02, 1.4682e-03, + 2DIAGNOSTIC, 24, -7.526194018007e-01, 1.639084490887e-04, 7.7126e-02, 1.4200e-03, + 2DIAGNOSTIC, 25, -7.529258014567e-01, 1.507383002262e-04, 7.8593e-02, 1.4670e-03, + 2DIAGNOSTIC, 26, -7.640170837758e-01, 2.926100768372e-04, 8.0282e-02, 1.6899e-03, + 2DIAGNOSTIC, 27, -7.771115613901e-01, 5.851582753988e-04, 8.2480e-02, 2.1980e-03, + 2DIAGNOSTIC, 28, -7.878484307390e-01, 9.568414396900e-04, 8.4667e-02, 2.1870e-03, + 2DIAGNOSTIC, 29, -7.927628978856e-01, 1.291742210723e-03, 8.6396e-02, 1.7281e-03, + 2DIAGNOSTIC, 30, -7.972766878766e-01, 1.540010951934e-03, 8.8193e-02, 1.7972e-03, + 2DIAGNOSTIC, 31, -7.987721059997e-01, 1.648581648789e-03, 8.9897e-02, 1.7040e-03, + 2DIAGNOSTIC, 32, -7.996205115112e-01, 1.598159260058e-03, 9.1346e-02, 1.4491e-03, + 2DIAGNOSTIC, 33, -8.013777804335e-01, 1.422539171103e-03, 9.2807e-02, 1.4610e-03, + 2DIAGNOSTIC, 34, -8.202347363084e-01, 1.348426284977e-03, 9.4758e-02, 1.9510e-03, + 2DIAGNOSTIC, 35, -8.351794817543e-01, 1.307882640132e-03, 9.7135e-02, 2.3770e-03, + 2DIAGNOSTIC, 36, -8.357833484795e-01, 1.263553376041e-03, 9.8600e-02, 1.4651e-03, + 2DIAGNOSTIC, 37, -8.361202016445e-01, 1.240302240610e-03, 1.0028e-01, 1.6840e-03, + 2DIAGNOSTIC, 38, -8.361612192396e-01, 1.207056360224e-03, 1.0173e-01, 1.4422e-03, + 2DIAGNOSTIC, 39, -8.363117773043e-01, 1.104821807648e-03, 1.0319e-01, 1.4620e-03, + 2DIAGNOSTIC, 40, -8.366278123355e-01, 9.448482942194e-04, 1.0486e-01, 1.6701e-03, + 2DIAGNOSTIC, 41, -8.380210452510e-01, 7.315959002772e-04, 1.0658e-01, 1.7169e-03, + 2DIAGNOSTIC, 42, -8.349213845411e-01, 4.433595277820e-04, 1.0852e-01, 1.9450e-03, + 2DIAGNOSTIC, 43, -8.373872791822e-01, 1.615263993050e-04, 1.0998e-01, 1.4610e-03, + 2DIAGNOSTIC, 44, -8.423539142499e-01, 7.308267867010e-05, 1.1165e-01, 1.6739e-03, + 2DIAGNOSTIC, 45, -8.452628398944e-01, 1.260438506007e-04, 1.1333e-01, 1.6780e-03, + 2DIAGNOSTIC, 46, -8.463063030040e-01, 1.776171826627e-04, 1.1483e-01, 1.4970e-03, + 2DIAGNOSTIC, 47, -8.474674055364e-01, 2.225502761260e-04, 1.1680e-01, 1.9722e-03, + 2DIAGNOSTIC, 48, -8.486752729101e-01, 2.537258461000e-04, 1.1849e-01, 1.6921e-03, + 2DIAGNOSTIC, 49, -8.492865642497e-01, 2.638581775927e-04, 1.2017e-01, 1.6730e-03, + 2DIAGNOSTIC, 50, -8.493835157345e-01, 2.506957272977e-04, 1.2163e-01, 1.4660e-03, + 2DIAGNOSTIC, 51, -8.494126723916e-01, 2.256356789586e-04, 1.2310e-01, 1.4639e-03, + 2DIAGNOSTIC, 52, -8.494859060325e-01, 1.591226357865e-04, 1.2454e-01, 1.4460e-03, + 2DIAGNOSTIC, 53, -8.506505734395e-01, 1.041070022138e-04, 1.2667e-01, 2.1248e-03, + 2DIAGNOSTIC, 54, -8.507681630716e-01, 7.471087748584e-05, 1.2837e-01, 1.6980e-03, + 2DIAGNOSTIC, 55, -8.507873299630e-01, 5.863634802139e-05, 1.3005e-01, 1.6820e-03, + 2DIAGNOSTIC, 56, -8.509109220779e-01, 4.518261187554e-05, 1.3151e-01, 1.4622e-03, + 2DIAGNOSTIC, 57, -8.510823675906e-01, 3.615823309221e-05, 1.3321e-01, 1.7040e-03, + 2DIAGNOSTIC, 58, -8.522547460287e-01, 3.854607768891e-05, 1.3563e-01, 2.4121e-03, + 2DIAGNOSTIC, 59, -8.523805702927e-01, 4.145632123824e-05, 1.3706e-01, 1.4338e-03, + 2DIAGNOSTIC, 60, -8.524058621931e-01, 4.125104575111e-05, 1.3852e-01, 1.4641e-03, + 2DIAGNOSTIC, 61, -8.524339655831e-01, 3.766099482076e-05, 1.3998e-01, 1.4579e-03, + 2DIAGNOSTIC, 62, -8.525748016281e-01, 3.164381632056e-05, 1.4247e-01, 2.4900e-03, + 2DIAGNOSTIC, 63, -8.525770965719e-01, 2.930879198247e-05, 1.4393e-01, 1.4551e-03, + 2DIAGNOSTIC, 64, -8.525812925577e-01, 2.495875904521e-05, 1.4537e-01, 1.4420e-03, + 2DIAGNOSTIC, 65, -8.525939317389e-01, 1.867910606784e-05, 1.4684e-01, 1.4710e-03, + 2DIAGNOSTIC, 66, -8.526189533687e-01, 1.170966911700e-05, 1.4832e-01, 1.4801e-03, + 2DIAGNOSTIC, 67, -8.527811517696e-01, 5.470140701947e-06, 1.4975e-01, 1.4319e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.975663032812e-01, 1.797693134862e+308, 1.9797e-01, 4.8220e-02, + 2DIAGNOSTIC, 2, -4.973945830582e-01, 1.797693134862e+308, 2.0068e-01, 2.7101e-03, + 2DIAGNOSTIC, 3, -4.980180717319e-01, 1.797693134862e+308, 2.0322e-01, 2.5370e-03, + 2DIAGNOSTIC, 4, -4.986926461673e-01, 1.797693134862e+308, 2.0601e-01, 2.7912e-03, + 2DIAGNOSTIC, 5, -4.997082734353e-01, 1.797693134862e+308, 2.0829e-01, 2.2769e-03, + 2DIAGNOSTIC, 6, -5.013934381806e-01, 1.797693134862e+308, 2.1051e-01, 2.2211e-03, + 2DIAGNOSTIC, 7, -5.034640655286e-01, 1.797693134862e+308, 2.1330e-01, 2.7900e-03, + 2DIAGNOSTIC, 8, -5.040784904109e-01, 1.797693134862e+308, 2.1543e-01, 2.1269e-03, + 2DIAGNOSTIC, 9, -5.059002903183e-01, 1.797693134862e+308, 2.1760e-01, 2.1720e-03, + 2DIAGNOSTIC, 10, -5.094144536014e-01, 1.478704498058e-03, 2.2034e-01, 2.7459e-03, + 2DIAGNOSTIC, 11, -5.183279026875e-01, 1.971508184991e-03, 2.2306e-01, 2.7139e-03, + 2DIAGNOSTIC, 12, -5.322608611432e-01, 2.833190389450e-03, 2.2575e-01, 2.6910e-03, + 2DIAGNOSTIC, 13, -5.404958354572e-01, 3.668019485428e-03, 2.2816e-01, 2.4130e-03, + 2DIAGNOSTIC, 14, -5.545621906986e-01, 4.624447715237e-03, 2.3195e-01, 3.7870e-03, + 2DIAGNOSTIC, 15, -5.635145850468e-01, 5.377733475948e-03, 2.3438e-01, 2.4321e-03, + 2DIAGNOSTIC, 16, -5.644370325670e-01, 5.620786866116e-03, 2.3696e-01, 2.5821e-03, + 2DIAGNOSTIC, 17, -5.742370105355e-01, 5.695376413613e-03, 2.3929e-01, 2.3301e-03, + 2DIAGNOSTIC, 18, -5.855518310315e-01, 5.583424698288e-03, 2.4229e-01, 2.9938e-03, + 2DIAGNOSTIC, 19, -5.971928757976e-01, 5.338224724992e-03, 2.4510e-01, 2.8181e-03, + 2DIAGNOSTIC, 20, -6.018804581133e-01, 4.839448945826e-03, 2.4808e-01, 2.9728e-03, + 2DIAGNOSTIC, 21, -6.088311556943e-01, 4.345095520955e-03, 2.5118e-01, 3.1040e-03, + 2DIAGNOSTIC, 22, -6.142584730471e-01, 3.958301985253e-03, 2.5575e-01, 4.5710e-03, + 2DIAGNOSTIC, 23, -6.145000301896e-01, 3.422020220304e-03, 2.5814e-01, 2.3890e-03, + 2DIAGNOSTIC, 24, -6.170447235282e-01, 2.973269556944e-03, 2.6067e-01, 2.5270e-03, + 2DIAGNOSTIC, 25, -6.189317791862e-01, 2.514489547696e-03, 2.6316e-01, 2.4929e-03, + 2DIAGNOSTIC, 26, -6.221925198791e-01, 1.940000603001e-03, 2.6618e-01, 3.0229e-03, + 2DIAGNOSTIC, 27, -6.245332238049e-01, 1.457012856572e-03, 2.6919e-01, 3.0038e-03, + 2DIAGNOSTIC, 28, -6.260481111064e-01, 1.106212591057e-03, 2.7148e-01, 2.2938e-03, + 2DIAGNOSTIC, 29, -6.296268743941e-01, 9.454863387090e-04, 2.7371e-01, 2.2230e-03, + 2DIAGNOSTIC, 30, -6.325855360826e-01, 8.327784572671e-04, 2.7628e-01, 2.5790e-03, + 2DIAGNOSTIC, 31, -6.332214505439e-01, 7.698491360177e-04, 2.7882e-01, 2.5339e-03, + 2DIAGNOSTIC, 32, -6.333502356993e-01, 7.270234380185e-04, 2.8110e-01, 2.2790e-03, + 2DIAGNOSTIC, 33, -6.335043276541e-01, 6.245829647503e-04, 2.8339e-01, 2.2910e-03, + 2DIAGNOSTIC, 34, -6.340507156648e-01, 5.144537086736e-04, 2.8565e-01, 2.2650e-03, + 2DIAGNOSTIC, 35, -6.385951078222e-01, 4.521696798387e-04, 2.8885e-01, 3.1941e-03, + 2DIAGNOSTIC, 36, -6.392202459990e-01, 4.025525272614e-04, 2.9157e-01, 2.7280e-03, + 2DIAGNOSTIC, 37, -6.392171328852e-01, 3.501719922694e-04, 2.9430e-01, 2.7211e-03, + 2DIAGNOSTIC, 38, -6.395412684280e-01, 2.917475703594e-04, 2.9667e-01, 2.3720e-03, + 2DIAGNOSTIC, 39, -6.396271635171e-01, 2.538293066709e-04, 2.9902e-01, 2.3520e-03, + 2DIAGNOSTIC, 40, -6.397972154916e-01, 2.310749522844e-04, 3.0131e-01, 2.2910e-03, + 2DIAGNOSTIC, 41, -6.420584248261e-01, 2.218775616353e-04, 3.0445e-01, 3.1402e-03, + 2DIAGNOSTIC, 42, -6.430316532893e-01, 2.050123943142e-04, 3.0706e-01, 2.6071e-03, + 2DIAGNOSTIC, 43, -6.433855287063e-01, 1.758012685576e-04, 3.0969e-01, 2.6340e-03, + 2DIAGNOSTIC, 44, -6.438263113565e-01, 1.412638088442e-04, 3.1200e-01, 2.3110e-03, + 2DIAGNOSTIC, 45, -6.442255725718e-01, 1.479535883301e-04, 3.1524e-01, 3.2380e-03, + 2DIAGNOSTIC, 46, -6.446581814021e-01, 1.509745629236e-04, 3.1760e-01, 2.3580e-03, + 2DIAGNOSTIC, 47, -6.449452036129e-01, 1.420818850303e-04, 3.2055e-01, 2.9521e-03, + 2DIAGNOSTIC, 48, -6.450387329210e-01, 1.245520714103e-04, 3.2321e-01, 2.6550e-03, + 2DIAGNOSTIC, 49, -6.450501373961e-01, 9.726189288711e-05, 3.2551e-01, 2.2988e-03, + 2DIAGNOSTIC, 50, -6.450646576148e-01, 6.319024782296e-05, 3.2781e-01, 2.3072e-03, + 2DIAGNOSTIC, 51, -6.450964590999e-01, 4.584905664079e-05, 3.3040e-01, 2.5871e-03, + 2DIAGNOSTIC, 52, -6.458521267951e-01, 4.072261941516e-05, 3.3330e-01, 2.8970e-03, + 2DIAGNOSTIC, 53, -6.462997732895e-01, 3.895444251025e-05, 3.3601e-01, 2.7130e-03, + 2DIAGNOSTIC, 54, -6.464768857920e-01, 3.898324365366e-05, 3.3840e-01, 2.3909e-03, + 2DIAGNOSTIC, 55, -6.466173870788e-01, 4.003821665325e-05, 3.4111e-01, 2.7089e-03, + 2DIAGNOSTIC, 56, -6.466466779933e-01, 4.114312352499e-05, 3.4380e-01, 2.6908e-03, + 2DIAGNOSTIC, 57, -6.467250728971e-01, 4.124505416413e-05, 3.4613e-01, 2.3329e-03, + 2DIAGNOSTIC, 58, -6.468119360488e-01, 3.882900555720e-05, 3.4872e-01, 2.5899e-03, + 2DIAGNOSTIC, 59, -6.468404905818e-01, 3.319720709545e-05, 3.5098e-01, 2.2540e-03, + 2DIAGNOSTIC, 60, -6.471497191776e-01, 2.728894716332e-05, 3.5327e-01, 2.2919e-03, + 2DIAGNOSTIC, 61, -6.478346951168e-01, 2.439078911130e-05, 3.5552e-01, 2.2550e-03, + 2DIAGNOSTIC, 62, -6.485678870095e-01, 3.041290483531e-05, 3.5778e-01, 2.2540e-03, + 2DIAGNOSTIC, 63, -6.500434989600e-01, 4.761856557914e-05, 3.6068e-01, 2.9030e-03, + 2DIAGNOSTIC, 64, -6.503282894506e-01, 6.291321811408e-05, 3.6357e-01, 2.8899e-03, + 2DIAGNOSTIC, 65, -6.508055971710e-01, 7.626923435564e-05, 3.6620e-01, 2.6309e-03, + 2DIAGNOSTIC, 66, -6.526039735357e-01, 9.485680708898e-05, 3.6851e-01, 2.3129e-03, + 2DIAGNOSTIC, 67, -6.598426054329e-01, 1.544426013920e-04, 3.7113e-01, 2.6138e-03, + 2DIAGNOSTIC, 68, -6.650680625407e-01, 2.324694428187e-04, 3.7461e-01, 3.4850e-03, + 2DIAGNOSTIC, 69, -6.653637203109e-01, 2.876585945442e-04, 3.7685e-01, 2.2321e-03, + 2DIAGNOSTIC, 70, -6.657124829990e-01, 3.189855140743e-04, 3.7909e-01, 2.2461e-03, + 2DIAGNOSTIC, 71, -6.665183391837e-01, 3.285784817455e-04, 3.8136e-01, 2.2659e-03, + 2DIAGNOSTIC, 72, -6.671527679986e-01, 3.138492532858e-04, 3.8392e-01, 2.5649e-03, + 2DIAGNOSTIC, 73, -6.675903969363e-01, 2.809430250709e-04, 3.8760e-01, 3.6778e-03, + 2DIAGNOSTIC, 74, -6.676390287543e-01, 2.247432037148e-04, 3.9004e-01, 2.4381e-03, + 2DIAGNOSTIC, 75, -6.676996614512e-01, 1.526488391415e-04, 3.9266e-01, 2.6221e-03, + 2DIAGNOSTIC, 76, -6.677561783083e-01, 7.831357501284e-05, 3.9498e-01, 2.3232e-03, + 2DIAGNOSTIC, 77, -6.677630901310e-01, 4.110960332429e-05, 3.9726e-01, 2.2721e-03, + 2DIAGNOSTIC, 78, -6.679012598867e-01, 3.275976069572e-05, 3.9982e-01, 2.5661e-03, + 2DIAGNOSTIC, 79, -6.680029535401e-01, 2.386598964923e-05, 4.0242e-01, 2.5940e-03, + 2DIAGNOSTIC, 80, -6.681270379244e-01, 1.561182358664e-05, 4.0469e-01, 2.2769e-03, + 2DIAGNOSTIC, 81, -6.683069591155e-01, 1.163640543779e-05, 4.0727e-01, 2.5761e-03, + 2DIAGNOSTIC, 82, -6.690912372338e-01, 1.455835148178e-05, 4.1079e-01, 3.5200e-03, + 2DIAGNOSTIC, 83, -6.691983076180e-01, 1.893803345789e-05, 4.1389e-01, 3.0990e-03, + 2DIAGNOSTIC, 84, -6.692361550575e-01, 2.191968740794e-05, 4.1735e-01, 3.4580e-03, + 2DIAGNOSTIC, 85, -6.692613286634e-01, 2.326781576244e-05, 4.2045e-01, 3.1030e-03, + 2DIAGNOSTIC, 86, -6.695465699530e-01, 2.418334211161e-05, 4.2329e-01, 2.8450e-03, + 2DIAGNOSTIC, 87, -6.700480275645e-01, 2.533434676277e-05, 4.2577e-01, 2.4731e-03, + 2DIAGNOSTIC, 88, -6.704256991865e-01, 2.665440224717e-05, 4.2907e-01, 3.3040e-03, + 2DIAGNOSTIC, 89, -6.703920168139e-01, 2.580559015451e-05, 4.3268e-01, 3.6051e-03, + 2DIAGNOSTIC, 90, -6.704219463568e-01, 2.339275656590e-05, 4.3624e-01, 3.5601e-03, + 2DIAGNOSTIC, 91, -6.705603106251e-01, 2.029439846974e-05, 4.3950e-01, 3.2659e-03, + 2DIAGNOSTIC, 92, -6.706761970718e-01, 1.971405909022e-05, 4.4211e-01, 2.6040e-03, + 2DIAGNOSTIC, 93, -6.706376149847e-01, 1.758568096684e-05, 4.4461e-01, 2.5029e-03, + 2DIAGNOSTIC, 94, -6.707158813724e-01, 1.447370622632e-05, 4.4760e-01, 2.9919e-03, + 2DIAGNOSTIC, 95, -6.706788110258e-01, 1.002151552026e-05, 4.4983e-01, 2.2271e-03, + 2DIAGNOSTIC, 96, -6.706874518532e-01, 6.068016531814e-06, 4.5226e-01, 2.4290e-03, + 2DIAGNOSTIC, 97, -6.708267693159e-01, 4.588169666775e-06, 4.5501e-01, 2.7580e-03, + 2DIAGNOSTIC, 98, -6.708944011964e-01, 4.786524189240e-06, 4.5776e-01, 2.7430e-03, + 2DIAGNOSTIC, 99, -6.708873325045e-01, 4.371651978726e-06, 4.5988e-01, 2.1269e-03, + 2DIAGNOSTIC, 100, -6.708573803004e-01, 3.577509061816e-06, 4.6202e-01, 2.1341e-03, + 2DIAGNOSTIC, 101, -6.708659349408e-01, 3.139792493006e-06, 4.6441e-01, 2.3899e-03, + 2DIAGNOSTIC, 102, -6.708719550962e-01, 2.971847457086e-06, 4.6651e-01, 2.0981e-03, + 2DIAGNOSTIC, 103, -6.708842276306e-01, 2.415670706987e-06, 4.6863e-01, 2.1250e-03, + 2DIAGNOSTIC, 104, -6.709018958421e-01, 2.099729079341e-06, 4.7103e-01, 2.4009e-03, + 2DIAGNOSTIC, 105, -6.710805760965e-01, 2.239028830259e-06, 4.7467e-01, 3.6330e-03, + 2DIAGNOSTIC, 106, -6.710360507144e-01, 2.003055842742e-06, 4.7679e-01, 2.1250e-03, + 2DIAGNOSTIC, 107, -6.709963706657e-01, 2.032791491934e-06, 4.7894e-01, 2.1441e-03, + 2DIAGNOSTIC, 108, -6.710003396217e-01, 2.207696517391e-06, 4.8106e-01, 2.1229e-03, + 2DIAGNOSTIC, 109, -6.710996422325e-01, 2.571386210848e-06, 4.8321e-01, 2.1479e-03, + 2DIAGNOSTIC, 110, -6.711028440767e-01, 2.573718319356e-06, 4.8569e-01, 2.4810e-03, + 2DIAGNOSTIC, 111, -6.710380938715e-01, 2.135496599659e-06, 4.8815e-01, 2.4619e-03, + 2DIAGNOSTIC, 112, -6.711435264898e-01, 2.003927624339e-06, 4.9133e-01, 3.1819e-03, + 2DIAGNOSTIC, 113, -6.710356929802e-01, 1.317609640259e-06, 4.9356e-01, 2.2252e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.135321690256e-01, 1.797693134862e+308, 5.6527e-01, 7.1714e-02, + 2DIAGNOSTIC, 2, -5.138046662401e-01, 1.797693134862e+308, 5.7726e-01, 1.1993e-02, + 2DIAGNOSTIC, 3, -5.143252744427e-01, 1.797693134862e+308, 5.8968e-01, 1.2420e-02, + 2DIAGNOSTIC, 4, -5.150851264922e-01, 1.797693134862e+308, 6.0201e-01, 1.2325e-02, + 2DIAGNOSTIC, 5, -5.160683147797e-01, 1.797693134862e+308, 6.1421e-01, 1.2205e-02, + 2DIAGNOSTIC, 6, -5.172906355846e-01, 1.797693134862e+308, 6.3149e-01, 1.7282e-02, + 2DIAGNOSTIC, 7, -5.172876185321e-01, 1.797693134862e+308, 6.4552e-01, 1.4027e-02, + 2DIAGNOSTIC, 8, -5.173074767164e-01, 1.797693134862e+308, 6.5742e-01, 1.1895e-02, + 2DIAGNOSTIC, 9, -5.173253662474e-01, 1.797693134862e+308, 6.7329e-01, 1.5875e-02, + 2DIAGNOSTIC, 10, -5.173276639742e-01, 5.648029573572e-04, 6.8754e-01, 1.4246e-02, + 2DIAGNOSTIC, 11, -5.173250780352e-01, 4.181547858203e-04, 7.0109e-01, 1.3548e-02, + 2DIAGNOSTIC, 12, -5.173325420164e-01, 2.718996859800e-04, 7.1389e-01, 1.2801e-02, + 2DIAGNOSTIC, 13, -5.173565952840e-01, 1.473490205801e-04, 7.2584e-01, 1.1954e-02, + 2DIAGNOSTIC, 14, -5.173921635957e-01, 5.816929827668e-05, 7.3779e-01, 1.1950e-02, + 2DIAGNOSTIC, 15, -5.174244258215e-01, 1.175669479306e-05, 7.4925e-01, 1.1457e-02, + 2DIAGNOSTIC, 16, -5.174785332050e-01, 1.419118221789e-05, 7.6031e-01, 1.1061e-02, + 2DIAGNOSTIC, 17, -5.176517866843e-01, 2.068932353531e-05, 7.7292e-01, 1.2610e-02, + 2DIAGNOSTIC, 18, -5.177680515795e-01, 2.873708014027e-05, 7.8535e-01, 1.2431e-02, + 2DIAGNOSTIC, 19, -5.178856205667e-01, 3.732531322886e-05, 8.0471e-01, 1.9356e-02, + 2DIAGNOSTIC, 20, -5.179156981750e-01, 4.264560111515e-05, 8.1558e-01, 1.0878e-02, + 2DIAGNOSTIC, 21, -5.180099721842e-01, 4.607203369073e-05, 8.2633e-01, 1.0744e-02, + 2DIAGNOSTIC, 22, -5.181519921363e-01, 4.866940873270e-05, 8.3851e-01, 1.2183e-02, + 2DIAGNOSTIC, 23, -5.182081722758e-01, 4.841526501995e-05, 8.5075e-01, 1.2235e-02, + 2DIAGNOSTIC, 24, -5.182277296846e-01, 4.507499622262e-05, 8.6296e-01, 1.2219e-02, + 2DIAGNOSTIC, 25, -5.182548215851e-01, 3.927832624154e-05, 8.7539e-01, 1.2428e-02, + 2DIAGNOSTIC, 26, -5.182728102229e-01, 3.180444632502e-05, 8.8624e-01, 1.0846e-02, + 2DIAGNOSTIC, 27, -5.183088234606e-01, 2.617842678527e-05, 8.9771e-01, 1.1475e-02, + 2DIAGNOSTIC, 28, -5.184433627256e-01, 2.345301110362e-05, 9.1206e-01, 1.4347e-02, + 2DIAGNOSTIC, 29, -5.185134826472e-01, 2.234277369343e-05, 9.2651e-01, 1.4444e-02, + 2DIAGNOSTIC, 30, -5.185381066304e-01, 2.029143147179e-05, 9.3954e-01, 1.3036e-02, + 2DIAGNOSTIC, 31, -5.185409332837e-01, 1.825085058305e-05, 9.5173e-01, 1.2192e-02, + 2DIAGNOSTIC, 32, -5.185967613839e-01, 1.808977468721e-05, 9.6321e-01, 1.1475e-02, + 2DIAGNOSTIC, 33, -5.186311574221e-01, 1.776220618249e-05, 9.7460e-01, 1.1395e-02, + 2DIAGNOSTIC, 34, -5.187711584040e-01, 1.840435723914e-05, 9.9547e-01, 2.0869e-02, + 2DIAGNOSTIC, 35, -5.187766319257e-01, 1.784148205980e-05, 1.0063e+00, 1.0834e-02, + 2DIAGNOSTIC, 36, -5.187703930504e-01, 1.593225502430e-05, 1.0182e+00, 1.1940e-02, + 2DIAGNOSTIC, 37, -5.187778772518e-01, 1.332284290077e-05, 1.0301e+00, 1.1822e-02, + 2DIAGNOSTIC, 38, -5.187668260448e-01, 1.140284048989e-05, 1.0433e+00, 1.3274e-02, + 2DIAGNOSTIC, 39, -5.187667810355e-01, 9.533685807313e-06, 1.0539e+00, 1.0526e-02, + 2DIAGNOSTIC, 40, -5.187707351596e-01, 7.326780977906e-06, 1.0672e+00, 1.3319e-02, + 2DIAGNOSTIC, 41, -5.187695151459e-01, 4.637692806925e-06, 1.0794e+00, 1.2255e-02, + 2DIAGNOSTIC, 42, -5.187675259930e-01, 2.422726227542e-06, 1.0911e+00, 1.1680e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.338868988533e-01, 1.797693134862e+308, 1.3049e+00, 2.1379e-01, + Elapsed time (stage 0): 1.3333e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.974741164892e-01, 1.797693134862e+308, 3.5793e-02, 3.5793e-02, + 2DIAGNOSTIC, 2, -9.999798891096e-01, 1.797693134862e+308, 3.7045e-02, 1.2519e-03, + 2DIAGNOSTIC, 3, -1.003718710551e+00, 1.797693134862e+308, 3.8333e-02, 1.2879e-03, + 2DIAGNOSTIC, 4, -1.009734386065e+00, 1.797693134862e+308, 3.9659e-02, 1.3261e-03, + 2DIAGNOSTIC, 5, -1.022598738097e+00, 1.797693134862e+308, 4.0995e-02, 1.3361e-03, + 2DIAGNOSTIC, 6, -1.032168783999e+00, 1.797693134862e+308, 4.2562e-02, 1.5671e-03, + 2DIAGNOSTIC, 7, -1.039006005933e+00, 1.797693134862e+308, 4.5214e-02, 2.6519e-03, + 2DIAGNOSTIC, 8, -1.039434544604e+00, 1.797693134862e+308, 4.6525e-02, 1.3111e-03, + 2DIAGNOSTIC, 9, -1.040651913612e+00, 1.797693134862e+308, 4.7804e-02, 1.2789e-03, + 2DIAGNOSTIC, 10, -1.041746432728e+00, 3.341679720419e-03, 4.9307e-02, 1.5030e-03, + 2DIAGNOSTIC, 11, -1.042877598486e+00, 2.696787084880e-03, 5.0799e-02, 1.4920e-03, + 2DIAGNOSTIC, 12, -1.040747107854e+00, 1.929489580903e-03, 5.2525e-02, 1.7259e-03, + 2DIAGNOSTIC, 13, -1.040596359042e+00, 1.188556396250e-03, 5.4325e-02, 1.8001e-03, + 2DIAGNOSTIC, 14, -1.041426109478e+00, 5.789184449407e-04, 5.6107e-02, 1.7819e-03, + 2DIAGNOSTIC, 15, -1.041809565898e+00, 2.378916401322e-04, 5.7875e-02, 1.7681e-03, + 2DIAGNOSTIC, 16, -1.041263931421e+00, 7.079555177766e-05, 5.9350e-02, 1.4749e-03, + 2DIAGNOSTIC, 17, -1.040724779485e+00, 2.082538671817e-05, 6.0854e-02, 1.5042e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.921634883313e-01, 1.797693134862e+308, 1.0620e-01, 4.5343e-02, + 2DIAGNOSTIC, 2, -6.929856201216e-01, 1.797693134862e+308, 1.0911e-01, 2.9140e-03, + 2DIAGNOSTIC, 3, -6.948237844916e-01, 1.797693134862e+308, 1.1184e-01, 2.7318e-03, + 2DIAGNOSTIC, 4, -6.974613437118e-01, 1.797693134862e+308, 1.1431e-01, 2.4650e-03, + 2DIAGNOSTIC, 5, -7.020160909790e-01, 1.797693134862e+308, 1.1675e-01, 2.4390e-03, + 2DIAGNOSTIC, 6, -7.088682918616e-01, 1.797693134862e+308, 1.1908e-01, 2.3329e-03, + 2DIAGNOSTIC, 7, -7.280440226589e-01, 1.797693134862e+308, 1.2195e-01, 2.8691e-03, + 2DIAGNOSTIC, 8, -7.483599153119e-01, 1.797693134862e+308, 1.2666e-01, 4.7150e-03, + 2DIAGNOSTIC, 9, -7.484682771054e-01, 1.797693134862e+308, 1.2923e-01, 2.5640e-03, + 2DIAGNOSTIC, 10, -7.485727897504e-01, 6.268502548012e-03, 1.3206e-01, 2.8291e-03, + 2DIAGNOSTIC, 11, -7.485742839023e-01, 5.865084989571e-03, 1.3456e-01, 2.4989e-03, + 2DIAGNOSTIC, 12, -7.486407444903e-01, 5.024594732028e-03, 1.3736e-01, 2.8050e-03, + 2DIAGNOSTIC, 13, -7.487814526465e-01, 3.915678793045e-03, 1.3986e-01, 2.5010e-03, + 2DIAGNOSTIC, 14, -7.489237711600e-01, 2.698594670215e-03, 1.4233e-01, 2.4710e-03, + 2DIAGNOSTIC, 15, -7.493133455039e-01, 1.541298135684e-03, 1.4510e-01, 2.7680e-03, + 2DIAGNOSTIC, 16, -7.497619795890e-01, 5.623571649526e-04, 1.4758e-01, 2.4798e-03, + 2DIAGNOSTIC, 17, -7.504174535506e-01, 9.112780614796e-05, 1.5019e-01, 2.6140e-03, + 2DIAGNOSTIC, 18, -7.515063373115e-01, 1.275445207953e-04, 1.5281e-01, 2.6162e-03, + 2DIAGNOSTIC, 19, -7.526865502356e-01, 1.742521318183e-04, 1.5531e-01, 2.4951e-03, + 2DIAGNOSTIC, 20, -7.539794531208e-01, 2.269149159834e-04, 1.5808e-01, 2.7740e-03, + 2DIAGNOSTIC, 21, -7.548256763258e-01, 2.688140394095e-04, 1.6080e-01, 2.7239e-03, + 2DIAGNOSTIC, 22, -7.552724011642e-01, 2.908510589199e-04, 1.6394e-01, 3.1328e-03, + 2DIAGNOSTIC, 23, -7.554103463325e-01, 2.885748040926e-04, 1.6643e-01, 2.4889e-03, + 2DIAGNOSTIC, 24, -7.560338606169e-01, 2.717617572370e-04, 1.6889e-01, 2.4679e-03, + 2DIAGNOSTIC, 25, -7.572510487675e-01, 2.553130433014e-04, 1.7145e-01, 2.5611e-03, + 2DIAGNOSTIC, 26, -7.582078671423e-01, 2.366094575820e-04, 1.7392e-01, 2.4700e-03, + 2DIAGNOSTIC, 27, -7.588445014758e-01, 2.154336319639e-04, 1.7727e-01, 3.3500e-03, + 2DIAGNOSTIC, 28, -7.591037910517e-01, 1.941448457438e-04, 1.7970e-01, 2.4250e-03, + 2DIAGNOSTIC, 29, -7.593622003820e-01, 1.749295279485e-04, 1.8340e-01, 3.7010e-03, + 2DIAGNOSTIC, 30, -7.594225752699e-01, 1.574282780398e-04, 1.8584e-01, 2.4440e-03, + 2DIAGNOSTIC, 31, -7.594842886293e-01, 1.372870169542e-04, 1.8857e-01, 2.7301e-03, + 2DIAGNOSTIC, 32, -7.595327395621e-01, 1.115920986214e-04, 1.9135e-01, 2.7730e-03, + 2DIAGNOSTIC, 33, -7.593854496726e-01, 7.695859039644e-05, 1.9384e-01, 2.4910e-03, + 2DIAGNOSTIC, 34, -7.593406505568e-01, 4.356209897727e-05, 1.9629e-01, 2.4550e-03, + 2DIAGNOSTIC, 35, -7.594927239336e-01, 2.282428098264e-05, 1.9873e-01, 2.4359e-03, + 2DIAGNOSTIC, 36, -7.595976125725e-01, 1.223383871954e-05, 2.0146e-01, 2.7270e-03, + 2DIAGNOSTIC, 37, -7.596896780255e-01, 8.606396891576e-06, 2.0421e-01, 2.7521e-03, + 2DIAGNOSTIC, 38, -7.597230936565e-01, 7.354844230898e-06, 2.0676e-01, 2.5501e-03, + 2DIAGNOSTIC, 39, -7.602487104342e-01, 1.323656896821e-05, 2.1062e-01, 3.8571e-03, + 2DIAGNOSTIC, 40, -7.603559854645e-01, 1.904715938827e-05, 2.1312e-01, 2.5091e-03, + 2DIAGNOSTIC, 41, -7.603939300085e-01, 2.372935995272e-05, 2.1586e-01, 2.7399e-03, + 2DIAGNOSTIC, 42, -7.604915428852e-01, 2.743552854557e-05, 2.1862e-01, 2.7599e-03, + 2DIAGNOSTIC, 43, -7.605554324992e-01, 2.769363009831e-05, 2.2106e-01, 2.4371e-03, + 2DIAGNOSTIC, 44, -7.606382770553e-01, 2.559908357648e-05, 2.2379e-01, 2.7330e-03, + 2DIAGNOSTIC, 45, -7.608063341518e-01, 2.388221557048e-05, 2.2654e-01, 2.7471e-03, + 2DIAGNOSTIC, 46, -7.610231133179e-01, 2.270103341058e-05, 2.2931e-01, 2.7649e-03, + 2DIAGNOSTIC, 47, -7.612213449740e-01, 2.183064809153e-05, 2.3175e-01, 2.4419e-03, + 2DIAGNOSTIC, 48, -7.613095056068e-01, 1.981422522420e-05, 2.3448e-01, 2.7330e-03, + 2DIAGNOSTIC, 49, -7.615313502402e-01, 2.183992708939e-05, 2.3759e-01, 3.1099e-03, + 2DIAGNOSTIC, 50, -7.621102335755e-01, 2.692407346022e-05, 2.4034e-01, 2.7459e-03, + 2DIAGNOSTIC, 51, -7.621495019691e-01, 2.972561960387e-05, 2.4277e-01, 2.4278e-03, + 2DIAGNOSTIC, 52, -7.620920391402e-01, 2.997073991102e-05, 2.4578e-01, 3.0129e-03, + 2DIAGNOSTIC, 53, -7.621084677229e-01, 2.804876814861e-05, 2.4862e-01, 2.8372e-03, + 2DIAGNOSTIC, 54, -7.620385874685e-01, 2.361644581061e-05, 2.5112e-01, 2.5091e-03, + 2DIAGNOSTIC, 55, -7.619561254594e-01, 1.764589067715e-05, 2.5391e-01, 2.7809e-03, + 2DIAGNOSTIC, 56, -7.619612217534e-01, 1.174190320527e-05, 2.5668e-01, 2.7711e-03, + 2DIAGNOSTIC, 57, -7.618754493859e-01, 5.776368284336e-06, 2.5944e-01, 2.7621e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.711319400140e-01, 1.797693134862e+308, 3.2297e-01, 6.3536e-02, + 2DIAGNOSTIC, 2, -5.713211263984e-01, 1.797693134862e+308, 3.3668e-01, 1.3705e-02, + 2DIAGNOSTIC, 3, -5.715715426142e-01, 1.797693134862e+308, 3.5038e-01, 1.3701e-02, + 2DIAGNOSTIC, 4, -5.718913505395e-01, 1.797693134862e+308, 3.6239e-01, 1.2008e-02, + 2DIAGNOSTIC, 5, -5.725009118761e-01, 1.797693134862e+308, 3.7534e-01, 1.2956e-02, + 2DIAGNOSTIC, 6, -5.727666281575e-01, 1.797693134862e+308, 3.9022e-01, 1.4876e-02, + 2DIAGNOSTIC, 7, -5.728022556623e-01, 1.797693134862e+308, 4.0219e-01, 1.1969e-02, + 2DIAGNOSTIC, 8, -5.731317747423e-01, 1.797693134862e+308, 4.1551e-01, 1.3322e-02, + 2DIAGNOSTIC, 9, -5.734454433851e-01, 1.797693134862e+308, 4.2947e-01, 1.3959e-02, + 2DIAGNOSTIC, 10, -5.737245210481e-01, 3.017258675230e-04, 4.4311e-01, 1.3638e-02, + 2DIAGNOSTIC, 11, -5.739451831191e-01, 2.689735549196e-04, 4.5517e-01, 1.2066e-02, + 2DIAGNOSTIC, 12, -5.741820041587e-01, 2.356946467412e-04, 4.7042e-01, 1.5245e-02, + 2DIAGNOSTIC, 13, -5.747105582741e-01, 2.160752129425e-04, 4.8448e-01, 1.4061e-02, + 2DIAGNOSTIC, 14, -5.752805787647e-01, 2.103180540739e-04, 4.9693e-01, 1.2451e-02, + 2DIAGNOSTIC, 15, -5.756567661962e-01, 2.184360477616e-04, 5.1460e-01, 1.7671e-02, + 2DIAGNOSTIC, 16, -5.759022526932e-01, 2.217567698114e-04, 5.2746e-01, 1.2859e-02, + 2DIAGNOSTIC, 17, -5.759608383672e-01, 2.071709850836e-04, 5.4044e-01, 1.2975e-02, + 2DIAGNOSTIC, 18, -5.761189830443e-01, 1.884902335767e-04, 5.5367e-01, 1.3230e-02, + 2DIAGNOSTIC, 19, -5.769249762777e-01, 1.832863551261e-04, 5.7875e-01, 2.5083e-02, + 2DIAGNOSTIC, 20, -5.769740029235e-01, 1.692513133722e-04, 5.9478e-01, 1.6034e-02, + 2DIAGNOSTIC, 21, -5.771814310197e-01, 1.513632308568e-04, 6.0937e-01, 1.4585e-02, + 2DIAGNOSTIC, 22, -5.775949162603e-01, 1.358168489867e-04, 6.2329e-01, 1.3923e-02, + 2DIAGNOSTIC, 23, -5.779193724774e-01, 1.269283727730e-04, 6.3618e-01, 1.2886e-02, + 2DIAGNOSTIC, 24, -5.782379971348e-01, 1.248741794981e-04, 6.4906e-01, 1.2885e-02, + 2DIAGNOSTIC, 25, -5.784075468180e-01, 1.220444171051e-04, 6.6548e-01, 1.6419e-02, + 2DIAGNOSTIC, 26, -5.784924648380e-01, 1.145955709988e-04, 6.7763e-01, 1.2151e-02, + 2DIAGNOSTIC, 27, -5.786029469704e-01, 1.001533620250e-04, 6.9292e-01, 1.5292e-02, + 2DIAGNOSTIC, 28, -5.789432924438e-01, 8.573911438296e-05, 7.1291e-01, 1.9983e-02, + 2DIAGNOSTIC, 29, -5.789715260491e-01, 7.843895499215e-05, 7.2509e-01, 1.2178e-02, + 2DIAGNOSTIC, 30, -5.790802583250e-01, 6.699735037576e-05, 7.3775e-01, 1.2660e-02, + 2DIAGNOSTIC, 31, -5.791671335243e-01, 5.470716728549e-05, 7.5092e-01, 1.3174e-02, + 2DIAGNOSTIC, 32, -5.792213935277e-01, 4.521473110833e-05, 7.6403e-01, 1.3110e-02, + 2DIAGNOSTIC, 33, -5.792659911051e-01, 3.746796634656e-05, 7.7887e-01, 1.4840e-02, + 2DIAGNOSTIC, 34, -5.793071305659e-01, 3.188754725767e-05, 7.9193e-01, 1.3056e-02, + 2DIAGNOSTIC, 35, -5.793523489075e-01, 2.674970379366e-05, 8.0979e-01, 1.7867e-02, + 2DIAGNOSTIC, 36, -5.794134935168e-01, 2.143363172529e-05, 8.2444e-01, 1.4644e-02, + 2DIAGNOSTIC, 37, -5.794222984850e-01, 1.591395597029e-05, 8.3917e-01, 1.4734e-02, + 2DIAGNOSTIC, 38, -5.794365205933e-01, 1.388146993396e-05, 8.5210e-01, 1.2928e-02, + 2DIAGNOSTIC, 39, -5.794394953454e-01, 1.108652510340e-05, 8.6477e-01, 1.2676e-02, + 2DIAGNOSTIC, 40, -5.794928188774e-01, 9.425611238477e-06, 8.7757e-01, 1.2798e-02, + 2DIAGNOSTIC, 41, -5.795482741158e-01, 8.700288857730e-06, 8.9244e-01, 1.4873e-02, + 2DIAGNOSTIC, 42, -5.796082174534e-01, 8.577673564124e-06, 9.0633e-01, 1.3884e-02, + 2DIAGNOSTIC, 43, -5.797546136413e-01, 9.902030395741e-06, 9.2714e-01, 2.0810e-02, + 2DIAGNOSTIC, 44, -5.797472339175e-01, 1.063187735490e-05, 9.4121e-01, 1.4069e-02, + 2DIAGNOSTIC, 45, -5.797416617880e-01, 1.082057138646e-05, 9.5918e-01, 1.7975e-02, + 2DIAGNOSTIC, 46, -5.797431210709e-01, 1.071561992672e-05, 9.7917e-01, 1.9990e-02, + 2DIAGNOSTIC, 47, -5.797441585615e-01, 9.743359600172e-06, 9.9267e-01, 1.3497e-02, + 2DIAGNOSTIC, 48, -5.797402282622e-01, 8.036048039443e-06, 1.0048e+00, 1.2113e-02, + 2DIAGNOSTIC, 49, -5.797321678625e-01, 5.640102359181e-06, 1.0189e+00, 1.4080e-02, + 2DIAGNOSTIC, 50, -5.797286719136e-01, 3.371238816507e-06, 1.0313e+00, 1.2429e-02, + 2DIAGNOSTIC, 51, -5.797258954746e-01, 1.437056235280e-06, 1.0445e+00, 1.3207e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.815443991873e-01, 1.797693134862e+308, 1.2368e+00, 1.9230e-01, + Elapsed time (stage 1): 1.2593e+00 + + +Total elapsed time: 2.5932e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:05:04 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 28 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 52 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 59.61% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 59.61% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[ 1170 866 312 18891 2178 2197 1843 330 148 10115 172 0 + 0 0 8554 500 1324 866 4148 1368 0 1214 935 182 + 272 193 487 179] +[25785 16492 8729 6787 2878 1600 5857 6763 8069 1063 3355 3461 + 2796 2011 911 1058 578 868 591 755 558 163 407 936 + 0 0 147 407] +[ 527 9533 0 0 579 0 160 0 19927 146 157 10032 + 0 0 403 11175 0 0 0 0 0 7789 0 3620 + 0 13266 2592 0] +[14926 168 6016 1412 3112 1808 2399 1142 0 11434 2089 0 + 815 311 15035 0 158 7486 3768 3168 7187 0 410 0 + 1032 191 220 301] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:12:49 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:12:55 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:39 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:39 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:39 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:48 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:52 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC007 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:17:21 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:17:46 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:19:34 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:19:35 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:20:55 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:20:56 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x557856e74d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [75.2586, 126.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557856ceb730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7efd800b4010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x557856e78020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557856e7e0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7efd7c9f5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x557856e8e840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [75.2586, 126.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557856e7a890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7efd77d21010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x557856e923e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557856e81130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7efd74662010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.682512953879e-01, 1.797693134862e+308, 2.3918e-01, 2.3918e-01, + 2DIAGNOSTIC, 2, -4.701855838086e-01, 1.797693134862e+308, 2.4098e-01, 1.8029e-03, + 2DIAGNOSTIC, 3, -4.734079768531e-01, 1.797693134862e+308, 2.4268e-01, 1.6901e-03, + 2DIAGNOSTIC, 4, -4.758197896684e-01, 1.797693134862e+308, 2.4433e-01, 1.6520e-03, + 2DIAGNOSTIC, 5, -4.800597212623e-01, 1.797693134862e+308, 2.4603e-01, 1.6990e-03, + 2DIAGNOSTIC, 6, -4.867974008620e-01, 1.797693134862e+308, 2.4774e-01, 1.7159e-03, + 2DIAGNOSTIC, 7, -4.989269657413e-01, 1.797693134862e+308, 2.4945e-01, 1.7130e-03, + 2DIAGNOSTIC, 8, -5.329130978894e-01, 1.797693134862e+308, 2.5165e-01, 2.1920e-03, + 2DIAGNOSTIC, 9, -5.371371518316e-01, 1.797693134862e+308, 2.5319e-01, 1.5380e-03, + 2DIAGNOSTIC, 10, -5.379893750112e-01, 1.042358532366e-02, 2.5472e-01, 1.5328e-03, + 2DIAGNOSTIC, 11, -5.388548036963e-01, 1.006938576489e-02, 2.5619e-01, 1.4732e-03, + 2DIAGNOSTIC, 12, -5.403878290261e-01, 9.028479798837e-03, 2.5788e-01, 1.6880e-03, + 2DIAGNOSTIC, 13, -5.419289644645e-01, 7.527827826760e-03, 2.5993e-01, 2.0528e-03, + 2DIAGNOSTIC, 14, -5.435487033292e-01, 5.732651352284e-03, 2.6135e-01, 1.4210e-03, + 2DIAGNOSTIC, 15, -5.435870129408e-01, 3.847109740410e-03, 2.6275e-01, 1.3950e-03, + 2DIAGNOSTIC, 16, -5.444259822832e-01, 2.127131313438e-03, 2.6438e-01, 1.6320e-03, + 2DIAGNOSTIC, 17, -5.449158935370e-01, 8.049162904752e-04, 2.6586e-01, 1.4789e-03, + 2DIAGNOSTIC, 18, -5.461902543241e-01, 6.364389551793e-04, 2.6750e-01, 1.6389e-03, + 2DIAGNOSTIC, 19, -5.469824113065e-01, 5.715524664585e-04, 2.6895e-01, 1.4482e-03, + 2DIAGNOSTIC, 20, -5.483805314658e-01, 5.223806241936e-04, 2.7041e-01, 1.4629e-03, + 2DIAGNOSTIC, 21, -5.532032445279e-01, 5.764996987534e-04, 2.7255e-01, 2.1369e-03, + 2DIAGNOSTIC, 22, -5.541694062893e-01, 6.298912626794e-04, 2.7418e-01, 1.6391e-03, + 2DIAGNOSTIC, 23, -5.541494054441e-01, 6.554521910530e-04, 2.7589e-01, 1.7030e-03, + 2DIAGNOSTIC, 24, -5.548194146465e-01, 6.710534329885e-04, 2.7757e-01, 1.6789e-03, + 2DIAGNOSTIC, 25, -5.555651592668e-01, 6.384904315738e-04, 2.7919e-01, 1.6241e-03, + 2DIAGNOSTIC, 26, -5.573204436560e-01, 6.005375273936e-04, 2.8083e-01, 1.6420e-03, + 2DIAGNOSTIC, 27, -5.578484431362e-01, 5.280758690865e-04, 2.8245e-01, 1.6179e-03, + 2DIAGNOSTIC, 28, -5.577572456173e-01, 4.357481438552e-04, 2.8407e-01, 1.6170e-03, + 2DIAGNOSTIC, 29, -5.579107882467e-01, 3.276442959722e-04, 2.8616e-01, 2.0950e-03, + 2DIAGNOSTIC, 30, -5.580306679891e-01, 2.207137440551e-04, 2.8797e-01, 1.8101e-03, + 2DIAGNOSTIC, 31, -5.581879016898e-01, 1.849911728192e-04, 2.9008e-01, 2.1031e-03, + 2DIAGNOSTIC, 32, -5.584871122201e-01, 1.553423590844e-04, 2.9243e-01, 2.3551e-03, + 2DIAGNOSTIC, 33, -5.572578493741e-01, 9.303599899639e-05, 2.9441e-01, 1.9832e-03, + 2DIAGNOSTIC, 34, -5.575899053452e-01, 4.220840475404e-05, 2.9601e-01, 1.5941e-03, + 2DIAGNOSTIC, 35, -5.607787369314e-01, 4.908618293847e-05, 2.9787e-01, 1.8630e-03, + 2DIAGNOSTIC, 36, -5.613557878283e-01, 8.346754204203e-05, 2.9979e-01, 1.9150e-03, + 2DIAGNOSTIC, 37, -5.628718992493e-01, 1.377457433252e-04, 3.0580e-01, 6.0132e-03, + 2DIAGNOSTIC, 38, -5.628716631358e-01, 1.752123860397e-04, 3.0745e-01, 1.6479e-03, + 2DIAGNOSTIC, 39, -5.628721018841e-01, 1.964024118064e-04, 3.0904e-01, 1.5919e-03, + 2DIAGNOSTIC, 40, -5.628728438283e-01, 1.987428993276e-04, 3.1063e-01, 1.5912e-03, + 2DIAGNOSTIC, 41, -5.628740981845e-01, 1.835496524435e-04, 3.1222e-01, 1.5900e-03, + 2DIAGNOSTIC, 42, -5.628762378531e-01, 1.562484558941e-04, 3.1382e-01, 1.5950e-03, + 2DIAGNOSTIC, 43, -5.628798651629e-01, 1.008501855059e-04, 3.1541e-01, 1.5960e-03, + 2DIAGNOSTIC, 44, -5.628859690594e-01, 4.183336351822e-05, 3.1700e-01, 1.5881e-03, + 2DIAGNOSTIC, 45, -5.628962662865e-01, 1.892712849553e-05, 3.1863e-01, 1.6310e-03, + 2DIAGNOSTIC, 46, -5.629136286041e-01, 1.590470384505e-06, 3.2024e-01, 1.6081e-03, + 2DIAGNOSTIC, 47, -5.629428526820e-01, 2.151081007987e-06, 3.2185e-01, 1.6141e-03, + 2DIAGNOSTIC, 48, -5.629919271511e-01, 3.075379494354e-06, 3.2347e-01, 1.6150e-03, + 2DIAGNOSTIC, 49, -5.630737583576e-01, 4.600243886845e-06, 3.2509e-01, 1.6241e-03, + 2DIAGNOSTIC, 50, -5.632087120752e-01, 7.088178904383e-06, 3.2672e-01, 1.6251e-03, + 2DIAGNOSTIC, 51, -5.634256037199e-01, 1.106737133433e-05, 3.2835e-01, 1.6379e-03, + 2DIAGNOSTIC, 52, -5.637712393557e-01, 1.733991270783e-05, 3.3002e-01, 1.6661e-03, + 2DIAGNOSTIC, 53, -5.642868489562e-01, 2.681332883804e-05, 3.3192e-01, 1.8981e-03, + 2DIAGNOSTIC, 54, -5.647470354727e-01, 3.782547230810e-05, 3.3356e-01, 1.6370e-03, + 2DIAGNOSTIC, 55, -5.652520616325e-01, 4.969115727829e-05, 3.3543e-01, 1.8768e-03, + 2DIAGNOSTIC, 56, -5.654866183732e-01, 5.870022778079e-05, 3.3735e-01, 1.9190e-03, + 2DIAGNOSTIC, 57, -5.651473406543e-01, 5.897346486067e-05, 3.3897e-01, 1.6160e-03, + 2DIAGNOSTIC, 58, -5.650228425100e-01, 5.305720381885e-05, 3.4064e-01, 1.6751e-03, + 2DIAGNOSTIC, 59, -5.654437746549e-01, 4.669510782385e-05, 3.4233e-01, 1.6851e-03, + 2DIAGNOSTIC, 60, -5.664969256037e-01, 4.618961788941e-05, 3.4403e-01, 1.7009e-03, + 2DIAGNOSTIC, 61, -5.682393848620e-01, 5.773887667844e-05, 3.4599e-01, 1.9629e-03, + 2DIAGNOSTIC, 62, -5.686707675873e-01, 6.968088024750e-05, 3.4769e-01, 1.6949e-03, + 2DIAGNOSTIC, 63, -5.688552085136e-01, 8.053532069705e-05, 3.4933e-01, 1.6441e-03, + 2DIAGNOSTIC, 64, -5.702955549742e-01, 9.871848250727e-05, 3.5101e-01, 1.6811e-03, + 2DIAGNOSTIC, 65, -5.711915013223e-01, 1.174580006378e-04, 3.5372e-01, 2.7130e-03, + 2DIAGNOSTIC, 66, -5.713781478073e-01, 1.274512259959e-04, 3.5542e-01, 1.6990e-03, + 2DIAGNOSTIC, 67, -5.717967529191e-01, 1.258302530124e-04, 3.5761e-01, 2.1889e-03, + 2DIAGNOSTIC, 68, -5.725838492525e-01, 1.173984473786e-04, 3.5924e-01, 1.6289e-03, + 2DIAGNOSTIC, 69, -5.729032725584e-01, 1.031602975235e-04, 3.6101e-01, 1.7650e-03, + 2DIAGNOSTIC, 70, -5.730776135840e-01, 8.808755518093e-05, 3.6343e-01, 2.4209e-03, + 2DIAGNOSTIC, 71, -5.732010646150e-01, 7.868803072975e-05, 3.6532e-01, 1.8880e-03, + 2DIAGNOSTIC, 72, -5.733522157200e-01, 6.633036341981e-05, 3.6703e-01, 1.7190e-03, + 2DIAGNOSTIC, 73, -5.736358280261e-01, 5.096861152206e-05, 3.6929e-01, 2.2509e-03, + 2DIAGNOSTIC, 74, -5.738065058656e-01, 4.216734264559e-05, 3.7085e-01, 1.5619e-03, + 2DIAGNOSTIC, 75, -5.738728489171e-01, 3.624928192367e-05, 3.7237e-01, 1.5259e-03, + 2DIAGNOSTIC, 76, -5.739624282108e-01, 2.893569289066e-05, 3.7428e-01, 1.9071e-03, + 2DIAGNOSTIC, 77, -5.740477249037e-01, 2.230674473106e-05, 3.7643e-01, 2.1470e-03, + 2DIAGNOSTIC, 78, -5.745521893248e-01, 2.217582667935e-05, 3.7800e-01, 1.5690e-03, + 2DIAGNOSTIC, 79, -5.746476969261e-01, 2.253422146986e-05, 3.7953e-01, 1.5340e-03, + 2DIAGNOSTIC, 80, -5.751282480676e-01, 2.498533578891e-05, 3.8134e-01, 1.8101e-03, + 2DIAGNOSTIC, 81, -5.804219346792e-01, 5.927634488238e-05, 3.8326e-01, 1.9240e-03, + 2DIAGNOSTIC, 82, -5.826117540089e-01, 1.006837875665e-04, 3.8493e-01, 1.6670e-03, + 2DIAGNOSTIC, 83, -5.840658023815e-01, 1.420629086234e-04, 3.8674e-01, 1.8060e-03, + 2DIAGNOSTIC, 84, -5.840561323989e-01, 1.701080695585e-04, 3.8806e-01, 1.3189e-03, + 2DIAGNOSTIC, 85, -5.839616842786e-01, 1.810867923093e-04, 3.8958e-01, 1.5259e-03, + 2DIAGNOSTIC, 86, -5.846593845775e-01, 1.786139950452e-04, 3.9093e-01, 1.3509e-03, + 2DIAGNOSTIC, 87, -5.850294096285e-01, 1.611289649445e-04, 3.9266e-01, 1.7231e-03, + 2DIAGNOSTIC, 88, -5.852312636357e-01, 1.329329643233e-04, 3.9431e-01, 1.6501e-03, + 2DIAGNOSTIC, 89, -5.868244152198e-01, 1.027939171464e-04, 3.9597e-01, 1.6649e-03, + 2DIAGNOSTIC, 90, -5.881748820217e-01, 7.304405545873e-05, 3.9813e-01, 2.1579e-03, + 2DIAGNOSTIC, 91, -5.898986287223e-01, 7.585479693242e-05, 4.0021e-01, 2.0759e-03, + 2DIAGNOSTIC, 92, -5.920111127324e-01, 9.479169448811e-05, 4.0302e-01, 2.8141e-03, + 2DIAGNOSTIC, 93, -5.934433756179e-01, 1.198656695793e-04, 4.0583e-01, 2.8121e-03, + 2DIAGNOSTIC, 94, -5.938810625688e-01, 1.351151300268e-04, 4.0807e-01, 2.2399e-03, + 2DIAGNOSTIC, 95, -5.944034171034e-01, 1.392337264471e-04, 4.1022e-01, 2.1451e-03, + 2DIAGNOSTIC, 96, -5.960108306480e-01, 1.419667990750e-04, 4.1208e-01, 1.8649e-03, + 2DIAGNOSTIC, 97, -5.950337858709e-01, 1.275314708205e-04, 4.1400e-01, 1.9212e-03, + 2DIAGNOSTIC, 98, -5.950818784139e-01, 1.025052160338e-04, 4.1564e-01, 1.6339e-03, + 2DIAGNOSTIC, 99, -5.959935807014e-01, 8.103531757580e-05, 4.1751e-01, 1.8749e-03, + 2DIAGNOSTIC, 100, -5.977116434344e-01, 6.746427822687e-05, 4.1931e-01, 1.8032e-03, + 2DIAGNOSTIC, 101, -5.985687669109e-01, 6.012669319510e-05, 4.2088e-01, 1.5609e-03, + 2DIAGNOSTIC, 102, -5.995005615206e-01, 6.222914191179e-05, 4.2241e-01, 1.5371e-03, + 2DIAGNOSTIC, 103, -6.029626688916e-01, 8.247601004917e-05, 4.2471e-01, 2.2938e-03, + 2DIAGNOSTIC, 104, -6.044781272157e-01, 1.033194230579e-04, 4.2648e-01, 1.7769e-03, + 2DIAGNOSTIC, 105, -6.073768612943e-01, 1.298313860621e-04, 4.2827e-01, 1.7900e-03, + 2DIAGNOSTIC, 106, -6.088667514495e-01, 1.580568321074e-04, 4.2989e-01, 1.6141e-03, + 2DIAGNOSTIC, 107, -6.130565124891e-01, 1.856714518753e-04, 4.3193e-01, 2.0449e-03, + 2DIAGNOSTIC, 108, -6.221310312983e-01, 2.367676777461e-04, 4.3778e-01, 5.8510e-03, + 2DIAGNOSTIC, 109, -6.221310017019e-01, 2.669546191786e-04, 4.3935e-01, 1.5700e-03, + 2DIAGNOSTIC, 110, -6.221311964260e-01, 2.793043206108e-04, 4.4095e-01, 1.5941e-03, + 2DIAGNOSTIC, 111, -6.221315256319e-01, 2.688852798162e-04, 4.4251e-01, 1.5662e-03, + 2DIAGNOSTIC, 112, -6.221320820914e-01, 2.361895677038e-04, 4.4410e-01, 1.5831e-03, + 2DIAGNOSTIC, 113, -6.221330224197e-01, 1.959683041054e-04, 4.4566e-01, 1.5659e-03, + 2DIAGNOSTIC, 114, -6.221346106839e-01, 1.440972045797e-04, 4.4722e-01, 1.5562e-03, + 2DIAGNOSTIC, 115, -6.221372912301e-01, 9.259072189415e-05, 4.4880e-01, 1.5850e-03, + 2DIAGNOSTIC, 116, -6.221418092102e-01, 3.951137964578e-05, 4.5039e-01, 1.5869e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.684115302395e-01, 1.797693134862e+308, 7.0479e-01, 2.5440e-01, + 2DIAGNOSTIC, 2, -4.673400237218e-01, 1.797693134862e+308, 7.0701e-01, 2.2199e-03, + 2DIAGNOSTIC, 3, -4.682754569746e-01, 1.797693134862e+308, 7.0948e-01, 2.4698e-03, + 2DIAGNOSTIC, 4, -4.690586906906e-01, 1.797693134862e+308, 7.1166e-01, 2.1751e-03, + 2DIAGNOSTIC, 5, -4.694045350310e-01, 1.797693134862e+308, 7.1373e-01, 2.0709e-03, + 2DIAGNOSTIC, 6, -4.698114993061e-01, 1.797693134862e+308, 7.1612e-01, 2.3880e-03, + 2DIAGNOSTIC, 7, -4.700454548751e-01, 1.797693134862e+308, 7.1832e-01, 2.2049e-03, + 2DIAGNOSTIC, 8, -4.703208927060e-01, 1.797693134862e+308, 7.2054e-01, 2.2161e-03, + 2DIAGNOSTIC, 9, -4.707400039432e-01, 1.797693134862e+308, 7.2298e-01, 2.4438e-03, + 2DIAGNOSTIC, 10, -4.727244202225e-01, 5.628128515634e-04, 7.2531e-01, 2.3229e-03, + 2DIAGNOSTIC, 11, -4.749829418752e-01, 7.270687661755e-04, 7.2864e-01, 3.3329e-03, + 2DIAGNOSTIC, 12, -4.789963600850e-01, 9.435993204536e-04, 7.3190e-01, 3.2570e-03, + 2DIAGNOSTIC, 13, -4.801241817415e-01, 1.133474838793e-03, 7.3440e-01, 2.5020e-03, + 2DIAGNOSTIC, 14, -4.807802417888e-01, 1.256483805017e-03, 7.3685e-01, 2.4569e-03, + 2DIAGNOSTIC, 15, -4.810721227777e-01, 1.274451882395e-03, 7.3897e-01, 2.1119e-03, + 2DIAGNOSTIC, 16, -4.824635711515e-01, 1.239380141637e-03, 7.4143e-01, 2.4679e-03, + 2DIAGNOSTIC, 17, -4.833149324473e-01, 1.130189475877e-03, 7.4422e-01, 2.7890e-03, + 2DIAGNOSTIC, 18, -4.834450388856e-01, 9.430283576470e-04, 7.4637e-01, 2.1510e-03, + 2DIAGNOSTIC, 19, -4.837349556029e-01, 7.126203112400e-04, 7.4862e-01, 2.2490e-03, + 2DIAGNOSTIC, 20, -4.842377191856e-01, 5.138628044485e-04, 7.5153e-01, 2.9042e-03, + 2DIAGNOSTIC, 21, -4.844436818302e-01, 3.531490588694e-04, 7.5406e-01, 2.5349e-03, + 2DIAGNOSTIC, 22, -4.846636733375e-01, 2.883687963576e-04, 7.5656e-01, 2.4998e-03, + 2DIAGNOSTIC, 23, -4.849719619823e-01, 2.398543181955e-04, 7.5871e-01, 2.1522e-03, + 2DIAGNOSTIC, 24, -4.856821917950e-01, 2.073226868201e-04, 7.6092e-01, 2.2089e-03, + 2DIAGNOSTIC, 25, -4.874624182542e-01, 2.062117181057e-04, 7.6312e-01, 2.1920e-03, + 2DIAGNOSTIC, 26, -4.939060633581e-01, 3.635608396384e-04, 7.6535e-01, 2.2371e-03, + 2DIAGNOSTIC, 27, -5.095687304022e-01, 8.336480874594e-04, 7.6759e-01, 2.2361e-03, + 2DIAGNOSTIC, 28, -5.259113599436e-01, 1.528626455880e-03, 7.7041e-01, 2.8179e-03, + 2DIAGNOSTIC, 29, -5.371568728761e-01, 2.255962443157e-03, 7.7425e-01, 3.8450e-03, + 2DIAGNOSTIC, 30, -5.384944750590e-01, 2.754345725600e-03, 7.7641e-01, 2.1591e-03, + 2DIAGNOSTIC, 31, -5.407097487173e-01, 3.006372451723e-03, 7.7889e-01, 2.4812e-03, + 2DIAGNOSTIC, 32, -5.434058723719e-01, 3.006330041832e-03, 7.8113e-01, 2.2330e-03, + 2DIAGNOSTIC, 33, -5.468985929363e-01, 2.783159693229e-03, 7.8330e-01, 2.1751e-03, + 2DIAGNOSTIC, 34, -5.547418202638e-01, 2.455510085347e-03, 7.8555e-01, 2.2531e-03, + 2DIAGNOSTIC, 35, -5.689930639769e-01, 2.179327153536e-03, 7.8881e-01, 3.2599e-03, + 2DIAGNOSTIC, 36, -5.790929493540e-01, 1.970509761004e-03, 7.9289e-01, 4.0779e-03, + 2DIAGNOSTIC, 37, -5.799838713034e-01, 1.837380549114e-03, 7.9507e-01, 2.1820e-03, + 2DIAGNOSTIC, 38, -5.821717117738e-01, 1.814068662157e-03, 7.9724e-01, 2.1639e-03, + 2DIAGNOSTIC, 39, -5.848208425842e-01, 1.820301373428e-03, 7.9969e-01, 2.4579e-03, + 2DIAGNOSTIC, 40, -5.853466359833e-01, 1.675071153539e-03, 8.0180e-01, 2.1050e-03, + 2DIAGNOSTIC, 41, -5.854837825545e-01, 1.409893646044e-03, 8.0421e-01, 2.4111e-03, + 2DIAGNOSTIC, 42, -5.861858639829e-01, 1.073141529738e-03, 8.0663e-01, 2.4230e-03, + 2DIAGNOSTIC, 43, -5.858975578536e-01, 6.944155106295e-04, 8.0907e-01, 2.4321e-03, + 2DIAGNOSTIC, 44, -5.860562033112e-01, 3.662478194328e-04, 8.1178e-01, 2.7158e-03, + 2DIAGNOSTIC, 45, -5.868157072743e-01, 2.010620298183e-04, 8.1527e-01, 3.4900e-03, + 2DIAGNOSTIC, 46, -5.871954033771e-01, 1.506313353910e-04, 8.1831e-01, 3.0332e-03, + 2DIAGNOSTIC, 47, -5.900291826538e-01, 1.314767236075e-04, 8.2079e-01, 2.4889e-03, + 2DIAGNOSTIC, 48, -5.952782824552e-01, 1.840914937670e-04, 8.2310e-01, 2.3029e-03, + 2DIAGNOSTIC, 49, -6.060098817856e-01, 3.643826988181e-04, 8.2575e-01, 2.6560e-03, + 2DIAGNOSTIC, 50, -6.138683709310e-01, 5.902913316842e-04, 8.3001e-01, 4.2539e-03, + 2DIAGNOSTIC, 51, -6.148223623961e-01, 7.605126265910e-04, 8.3231e-01, 2.3019e-03, + 2DIAGNOSTIC, 52, -6.160156199447e-01, 8.721191321115e-04, 8.3448e-01, 2.1710e-03, + 2DIAGNOSTIC, 53, -6.184804698102e-01, 9.172422039068e-04, 8.3696e-01, 2.4779e-03, + 2DIAGNOSTIC, 54, -6.202421625104e-01, 8.893257109494e-04, 8.3971e-01, 2.7509e-03, + 2DIAGNOSTIC, 55, -6.211931639984e-01, 7.934585982602e-04, 8.4187e-01, 2.1591e-03, + 2DIAGNOSTIC, 56, -6.222118191810e-01, 6.402895827260e-04, 8.4433e-01, 2.4631e-03, + 2DIAGNOSTIC, 57, -6.232067403402e-01, 4.685848600754e-04, 8.4652e-01, 2.1870e-03, + 2DIAGNOSTIC, 58, -6.274446126212e-01, 3.432944070063e-04, 8.4904e-01, 2.5229e-03, + 2DIAGNOSTIC, 59, -6.386363449968e-01, 3.834365992493e-04, 8.5127e-01, 2.2252e-03, + 2DIAGNOSTIC, 60, -6.450270460154e-01, 5.080770483516e-04, 8.5387e-01, 2.6000e-03, + 2DIAGNOSTIC, 61, -6.503743790300e-01, 6.334884619011e-04, 8.5773e-01, 3.8610e-03, + 2DIAGNOSTIC, 62, -6.532872126173e-01, 7.282376756538e-04, 8.5994e-01, 2.2130e-03, + 2DIAGNOSTIC, 63, -6.567777383775e-01, 7.983250476254e-04, 8.6212e-01, 2.1770e-03, + 2DIAGNOSTIC, 64, -6.610224938492e-01, 8.362293653656e-04, 8.6436e-01, 2.2399e-03, + 2DIAGNOSTIC, 65, -6.699128731563e-01, 8.695261078074e-04, 8.6657e-01, 2.2140e-03, + 2DIAGNOSTIC, 66, -6.725252003028e-01, 8.459849866746e-04, 8.6885e-01, 2.2819e-03, + 2DIAGNOSTIC, 67, -6.770913015675e-01, 7.857606111443e-04, 8.7230e-01, 3.4471e-03, + 2DIAGNOSTIC, 68, -6.779014287286e-01, 6.888377885919e-04, 8.7480e-01, 2.4958e-03, + 2DIAGNOSTIC, 69, -6.776010972916e-01, 6.090219115535e-04, 8.7804e-01, 3.2458e-03, + 2DIAGNOSTIC, 70, -6.778243795866e-01, 5.205737752918e-04, 8.8069e-01, 2.6469e-03, + 2DIAGNOSTIC, 71, -6.779850147373e-01, 4.240894389250e-04, 8.8321e-01, 2.5229e-03, + 2DIAGNOSTIC, 72, -6.777813841934e-01, 3.091612501767e-04, 8.8542e-01, 2.2070e-03, + 2DIAGNOSTIC, 73, -6.783956991019e-01, 1.967941730507e-04, 8.8769e-01, 2.2671e-03, + 2DIAGNOSTIC, 74, -6.788766511995e-01, 1.002242047909e-04, 8.8990e-01, 2.2109e-03, + 2DIAGNOSTIC, 75, -6.790559599864e-01, 5.774695882177e-05, 8.9254e-01, 2.6450e-03, + 2DIAGNOSTIC, 76, -6.789975646555e-01, 2.715002939208e-05, 8.9485e-01, 2.3129e-03, + 2DIAGNOSTIC, 77, -6.789945215503e-01, 2.447120944922e-05, 8.9737e-01, 2.5120e-03, + 2DIAGNOSTIC, 78, -6.791595384393e-01, 2.582587968388e-05, 8.9987e-01, 2.5048e-03, + 2DIAGNOSTIC, 79, -6.789413166990e-01, 2.128038174842e-05, 9.0232e-01, 2.4540e-03, + 2DIAGNOSTIC, 80, -6.788721408916e-01, 1.586088048073e-05, 9.0448e-01, 2.1579e-03, + 2DIAGNOSTIC, 81, -6.790046711674e-01, 1.105055826584e-05, 9.0663e-01, 2.1510e-03, + 2DIAGNOSTIC, 82, -6.791485987951e-01, 4.893542063828e-06, 9.0877e-01, 2.1410e-03, + 2DIAGNOSTIC, 83, -6.790640124708e-01, 1.520205047290e-06, 9.1093e-01, 2.1529e-03, + 2DIAGNOSTIC, 84, -6.796031705271e-01, 4.130830461142e-06, 9.1337e-01, 2.4450e-03, + 2DIAGNOSTIC, 85, -6.809037970177e-01, 1.480822641886e-05, 9.1667e-01, 3.2971e-03, + 2DIAGNOSTIC, 86, -6.808547936821e-01, 2.299114544391e-05, 9.1885e-01, 2.1820e-03, + 2DIAGNOSTIC, 87, -6.808988946283e-01, 2.909051751543e-05, 9.2102e-01, 2.1720e-03, + 2DIAGNOSTIC, 88, -6.811169224222e-01, 3.452720066021e-05, 9.2346e-01, 2.4331e-03, + 2DIAGNOSTIC, 89, -6.811939150984e-01, 3.567862848870e-05, 9.2582e-01, 2.3658e-03, + 2DIAGNOSTIC, 90, -6.812667916014e-01, 3.327487977325e-05, 9.3316e-01, 7.3419e-03, + 2DIAGNOSTIC, 91, -6.812667664677e-01, 2.847499310591e-05, 9.3536e-01, 2.1920e-03, + 2DIAGNOSTIC, 92, -6.812668018807e-01, 2.200552281363e-05, 9.3753e-01, 2.1758e-03, + 2DIAGNOSTIC, 93, -6.812668617530e-01, 1.315272618260e-05, 9.3972e-01, 2.1920e-03, + 2DIAGNOSTIC, 94, -6.812669629486e-01, 5.850367991373e-06, 9.4188e-01, 2.1570e-03, + 2DIAGNOSTIC, 95, -6.812671339328e-01, 4.814268099507e-06, 9.4404e-01, 2.1579e-03, + 2DIAGNOSTIC, 96, -6.812674226759e-01, 3.142851294479e-06, 9.4626e-01, 2.2211e-03, + 2DIAGNOSTIC, 97, -6.812679099481e-01, 1.444483656649e-06, 9.4848e-01, 2.2211e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.548058117572e-01, 1.797693134862e+308, 1.2272e+00, 2.7872e-01, + 2DIAGNOSTIC, 2, -5.567990252618e-01, 1.797693134862e+308, 1.2405e+00, 1.3335e-02, + 2DIAGNOSTIC, 3, -5.591485312675e-01, 1.797693134862e+308, 1.2535e+00, 1.2956e-02, + 2DIAGNOSTIC, 4, -5.610063624001e-01, 1.797693134862e+308, 1.2681e+00, 1.4589e-02, + 2DIAGNOSTIC, 5, -5.622271066828e-01, 1.797693134862e+308, 1.2835e+00, 1.5391e-02, + 2DIAGNOSTIC, 6, -5.624875052550e-01, 1.797693134862e+308, 1.2987e+00, 1.5214e-02, + 2DIAGNOSTIC, 7, -5.625367503364e-01, 1.797693134862e+308, 1.3134e+00, 1.4760e-02, + 2DIAGNOSTIC, 8, -5.625848735764e-01, 1.797693134862e+308, 1.3264e+00, 1.2977e-02, + 2DIAGNOSTIC, 9, -5.627307354342e-01, 1.797693134862e+308, 1.3457e+00, 1.9264e-02, + 2DIAGNOSTIC, 10, -5.627901701841e-01, 8.312375607285e-04, 1.3612e+00, 1.5514e-02, + 2DIAGNOSTIC, 11, -5.627508993583e-01, 4.874507764633e-04, 1.3770e+00, 1.5751e-02, + 2DIAGNOSTIC, 12, -5.627466986031e-01, 2.407005061795e-04, 1.3903e+00, 1.3303e-02, + 2DIAGNOSTIC, 13, -5.627592991856e-01, 1.011785886037e-04, 1.4057e+00, 1.5448e-02, + 2DIAGNOSTIC, 14, -5.627817412924e-01, 3.941484097493e-05, 1.4200e+00, 1.4319e-02, + 2DIAGNOSTIC, 15, -5.627794288805e-01, 2.336774277091e-05, 1.4368e+00, 1.6825e-02, + 2DIAGNOSTIC, 16, -5.627861595550e-01, 1.591494279025e-05, 1.4516e+00, 1.4728e-02, + 2DIAGNOSTIC, 17, -5.627762406529e-01, 9.279697958942e-06, 1.4651e+00, 1.3563e-02, + 2DIAGNOSTIC, 18, -5.627696151273e-01, 3.751748690654e-06, 1.4781e+00, 1.2918e-02, + 2DIAGNOSTIC, 19, -5.628128673576e-01, 3.593406151636e-06, 1.4928e+00, 1.4699e-02, + 2DIAGNOSTIC, 20, -5.628410524609e-01, 5.482619681779e-06, 1.5057e+00, 1.2908e-02, + 2DIAGNOSTIC, 21, -5.628793346866e-01, 6.809718844744e-06, 1.5183e+00, 1.2672e-02, + 2DIAGNOSTIC, 22, -5.629176770582e-01, 8.306555915771e-06, 1.5341e+00, 1.5736e-02, + 2DIAGNOSTIC, 23, -5.630122469320e-01, 1.137153588008e-05, 1.5468e+00, 1.2747e-02, + 2DIAGNOSTIC, 24, -5.630819637686e-01, 1.513507448400e-05, 1.5594e+00, 1.2624e-02, + 2DIAGNOSTIC, 25, -5.633300302303e-01, 2.224220653420e-05, 1.5880e+00, 2.8563e-02, + 2DIAGNOSTIC, 26, -5.633319791986e-01, 2.690696031624e-05, 1.6008e+00, 1.2805e-02, + 2DIAGNOSTIC, 27, -5.633033422094e-01, 2.816136836419e-05, 1.6158e+00, 1.4971e-02, + 2DIAGNOSTIC, 28, -5.633185912887e-01, 2.698406905898e-05, 1.6308e+00, 1.5047e-02, + 2DIAGNOSTIC, 29, -5.633043008107e-01, 2.390109506253e-05, 1.6438e+00, 1.2995e-02, + 2DIAGNOSTIC, 30, -5.633056124867e-01, 1.930754842478e-05, 1.6567e+00, 1.2852e-02, + 2DIAGNOSTIC, 31, -5.633233806409e-01, 1.420370432242e-05, 1.6701e+00, 1.3471e-02, + 2DIAGNOSTIC, 32, -5.633441601089e-01, 9.134324012582e-06, 1.6856e+00, 1.5479e-02, + 2DIAGNOSTIC, 33, -5.633422304484e-01, 5.028413916211e-06, 1.7001e+00, 1.4449e-02, + 2DIAGNOSTIC, 34, -5.633339450163e-01, 1.591067714007e-06, 1.7127e+00, 1.2606e-02, + 2DIAGNOSTIC, 35, -5.634042183238e-01, 2.890100199396e-06, 1.7254e+00, 1.2747e-02, + 2DIAGNOSTIC, 36, -5.634512493665e-01, 4.591503673265e-06, 1.7455e+00, 2.0103e-02, + 2DIAGNOSTIC, 37, -5.634379603336e-01, 5.253187330936e-06, 1.7620e+00, 1.6483e-02, + 2DIAGNOSTIC, 38, -5.634233830448e-01, 5.507792169873e-06, 1.7745e+00, 1.2534e-02, + 2DIAGNOSTIC, 39, -5.634466915081e-01, 5.439550301051e-06, 1.7869e+00, 1.2343e-02, + 2DIAGNOSTIC, 40, -5.634357537742e-01, 4.778457439271e-06, 1.8033e+00, 1.6367e-02, + 2DIAGNOSTIC, 41, -5.634681761279e-01, 4.370821471339e-06, 1.8182e+00, 1.4909e-02, + 2DIAGNOSTIC, 42, -5.634554833713e-01, 3.743085850012e-06, 1.8310e+00, 1.2828e-02, + 2DIAGNOSTIC, 43, -5.634121746701e-01, 2.358961834422e-06, 1.8437e+00, 1.2719e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.849582455886e-01, 1.797693134862e+308, 2.2719e+00, 4.2823e-01, + 2DIAGNOSTIC, 2, -4.853843506546e-01, 1.797693134862e+308, 2.3570e+00, 8.5109e-02, + 2DIAGNOSTIC, 3, -4.858285944546e-01, 1.797693134862e+308, 2.4398e+00, 8.2781e-02, + 2DIAGNOSTIC, 4, -4.860607333656e-01, 1.797693134862e+308, 2.5220e+00, 8.2145e-02, + 2DIAGNOSTIC, 5, -4.864008558651e-01, 1.797693134862e+308, 2.6166e+00, 9.4598e-02, + 2DIAGNOSTIC, 6, -4.865010399932e-01, 1.797693134862e+308, 2.6914e+00, 7.4834e-02, + 2DIAGNOSTIC, 7, -4.865476229347e-01, 1.797693134862e+308, 2.7769e+00, 8.5536e-02, + 2DIAGNOSTIC, 8, -4.865683745152e-01, 1.797693134862e+308, 2.8660e+00, 8.9102e-02, + 2DIAGNOSTIC, 9, -4.865889582843e-01, 1.797693134862e+308, 2.9416e+00, 7.5512e-02, + 2DIAGNOSTIC, 10, -4.866062778597e-01, 2.056723366905e-04, 3.0162e+00, 7.4691e-02, + 2DIAGNOSTIC, 11, -4.866790871806e-01, 1.320768307907e-04, 3.1246e+00, 1.0837e-01, + 2DIAGNOSTIC, 12, -4.867343634148e-01, 8.227401474989e-05, 3.2244e+00, 9.9795e-02, + 2DIAGNOSTIC, 13, -4.867382188496e-01, 5.301030241625e-05, 3.3689e+00, 1.4446e-01, + 2DIAGNOSTIC, 14, -4.867539393815e-01, 3.341256934121e-05, 3.4647e+00, 9.5836e-02, + 2DIAGNOSTIC, 15, -4.867599345740e-01, 2.698933252337e-05, 3.5653e+00, 1.0055e-01, + 2DIAGNOSTIC, 16, -4.867672948185e-01, 2.293787569849e-05, 3.6630e+00, 9.7699e-02, + 2DIAGNOSTIC, 17, -4.867705152908e-01, 1.910672825908e-05, 3.7469e+00, 8.3989e-02, + 2DIAGNOSTIC, 18, -4.867873235784e-01, 1.534716658366e-05, 3.8423e+00, 9.5316e-02, + 2DIAGNOSTIC, 19, -4.867942396644e-01, 1.159129106787e-05, 3.9364e+00, 9.4097e-02, + 2DIAGNOSTIC, 20, -4.867886112324e-01, 7.587899932771e-06, 4.0202e+00, 8.3812e-02, + 2DIAGNOSTIC, 21, -4.867916041032e-01, 5.490636903520e-06, 4.0949e+00, 7.4698e-02, + 2DIAGNOSTIC, 22, -4.868054617466e-01, 5.048638810047e-06, 4.2275e+00, 1.3259e-01, + 2DIAGNOSTIC, 23, -4.868046891135e-01, 4.360204790742e-06, 4.3130e+00, 8.5552e-02, + 2DIAGNOSTIC, 24, -4.868040068386e-01, 3.817411626493e-06, 4.3994e+00, 8.6440e-02, + 2DIAGNOSTIC, 25, -4.867999688495e-01, 3.139124987665e-06, 4.4744e+00, 7.5003e-02, + 2DIAGNOSTIC, 26, -4.867962650765e-01, 2.425008883200e-06, 4.5603e+00, 8.5868e-02, + 2DIAGNOSTIC, 27, -4.867986614354e-01, 1.757375124513e-06, 4.6467e+00, 8.6428e-02, + 2DIAGNOSTIC, 28, -4.867981265827e-01, 1.413344589071e-06, 4.7331e+00, 8.6330e-02, + 2DIAGNOSTIC, 29, -4.867961459527e-01, 1.175134599185e-06, 4.8425e+00, 1.0947e-01, + Elapsed time (stage 0): 4.9895e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.695322119398e-01, 1.797693134862e+308, 2.0236e-01, 2.0236e-01, + 2DIAGNOSTIC, 2, -7.723107932629e-01, 1.797693134862e+308, 2.0365e-01, 1.2901e-03, + 2DIAGNOSTIC, 3, -7.761694902887e-01, 1.797693134862e+308, 2.0487e-01, 1.2159e-03, + 2DIAGNOSTIC, 4, -7.830829984199e-01, 1.797693134862e+308, 2.0609e-01, 1.2231e-03, + 2DIAGNOSTIC, 5, -7.925353471734e-01, 1.797693134862e+308, 2.0733e-01, 1.2391e-03, + 2DIAGNOSTIC, 6, -8.078367969183e-01, 1.797693134862e+308, 2.0857e-01, 1.2441e-03, + 2DIAGNOSTIC, 7, -8.213972044370e-01, 1.797693134862e+308, 2.1022e-01, 1.6510e-03, + 2DIAGNOSTIC, 8, -8.394849166978e-01, 1.797693134862e+308, 2.1145e-01, 1.2281e-03, + 2DIAGNOSTIC, 9, -8.414572596129e-01, 1.797693134862e+308, 2.1299e-01, 1.5390e-03, + 2DIAGNOSTIC, 10, -8.500901075718e-01, 7.266820642549e-03, 2.1482e-01, 1.8308e-03, + 2DIAGNOSTIC, 11, -8.676991491811e-01, 7.174040339099e-03, 2.1674e-01, 1.9190e-03, + 2DIAGNOSTIC, 12, -8.750227928787e-01, 6.729427274644e-03, 2.1855e-01, 1.8041e-03, + 2DIAGNOSTIC, 13, -8.864462363544e-01, 6.152649628228e-03, 2.2037e-01, 1.8270e-03, + 2DIAGNOSTIC, 14, -8.928698009510e-01, 5.434598720875e-03, 2.2260e-01, 2.2311e-03, + 2DIAGNOSTIC, 15, -8.961791576412e-01, 4.612862414372e-03, 2.2479e-01, 2.1889e-03, + 2DIAGNOSTIC, 16, -8.974075954861e-01, 3.824674561175e-03, 2.2701e-01, 2.2180e-03, + 2DIAGNOSTIC, 17, -8.995422216114e-01, 3.087941480924e-03, 2.2917e-01, 2.1620e-03, + 2DIAGNOSTIC, 18, -8.987339211706e-01, 2.480367979482e-03, 2.3124e-01, 2.0690e-03, + 2DIAGNOSTIC, 19, -8.991308496417e-01, 1.753573749771e-03, 2.3291e-01, 1.6720e-03, + 2DIAGNOSTIC, 20, -8.997509149960e-01, 1.091457173245e-03, 2.3450e-01, 1.5879e-03, + 2DIAGNOSTIC, 21, -8.992855192333e-01, 6.669767818523e-04, 2.3593e-01, 1.4310e-03, + 2DIAGNOSTIC, 22, -8.995994956045e-01, 3.337586971316e-04, 2.3739e-01, 1.4610e-03, + 2DIAGNOSTIC, 23, -9.013612887657e-01, 1.887561908270e-04, 2.3910e-01, 1.7061e-03, + 2DIAGNOSTIC, 24, -9.037011811857e-01, 1.585605211189e-04, 2.4073e-01, 1.6341e-03, + 2DIAGNOSTIC, 25, -9.038483423186e-01, 1.609533861918e-04, 2.4238e-01, 1.6470e-03, + 2DIAGNOSTIC, 26, -9.039402917831e-01, 1.648442708553e-04, 2.4398e-01, 1.5960e-03, + 2DIAGNOSTIC, 27, -9.050084152811e-01, 1.929380989363e-04, 2.4565e-01, 1.6751e-03, + 2DIAGNOSTIC, 28, -9.092720045552e-01, 2.405150151625e-04, 2.4734e-01, 1.6849e-03, + 2DIAGNOSTIC, 29, -9.105075226072e-01, 2.785995101337e-04, 2.4881e-01, 1.4701e-03, + 2DIAGNOSTIC, 30, -9.109906354750e-01, 3.006153678361e-04, 2.5049e-01, 1.6840e-03, + 2DIAGNOSTIC, 31, -9.112382852731e-01, 2.917475801141e-04, 2.5194e-01, 1.4479e-03, + 2DIAGNOSTIC, 32, -9.103758609240e-01, 2.500053847028e-04, 2.5354e-01, 1.6050e-03, + 2DIAGNOSTIC, 33, -9.106824421761e-01, 2.066966802079e-04, 2.5599e-01, 2.4490e-03, + 2DIAGNOSTIC, 34, -9.106966031808e-01, 1.687267964095e-04, 2.5752e-01, 1.5321e-03, + 2DIAGNOSTIC, 35, -9.107562837508e-01, 1.195366622480e-04, 2.5901e-01, 1.4861e-03, + 2DIAGNOSTIC, 36, -9.107935315580e-01, 6.347112289894e-05, 2.6044e-01, 1.4300e-03, + 2DIAGNOSTIC, 37, -9.108345954795e-01, 1.358033321457e-05, 2.6194e-01, 1.4958e-03, + 2DIAGNOSTIC, 38, -9.109243335826e-01, 2.133325152698e-06, 2.6362e-01, 1.6880e-03, + 2DIAGNOSTIC, 39, -9.109815356169e-01, 1.682084756555e-06, 2.6508e-01, 1.4520e-03, + 2DIAGNOSTIC, 40, -9.110180215317e-01, 5.269305270932e-06, 2.6680e-01, 1.7190e-03, + 2DIAGNOSTIC, 41, -9.110281239309e-01, 1.051126820241e-05, 2.6867e-01, 1.8768e-03, + 2DIAGNOSTIC, 42, -9.110363933360e-01, 7.938175973617e-06, 2.7042e-01, 1.7488e-03, + 2DIAGNOSTIC, 43, -9.110414638662e-01, 7.142205582442e-06, 2.7194e-01, 1.5218e-03, + 2DIAGNOSTIC, 44, -9.110796083992e-01, 6.143994551597e-06, 2.7384e-01, 1.8940e-03, + 2DIAGNOSTIC, 45, -9.110883361929e-01, 5.159643655182e-06, 2.7555e-01, 1.7099e-03, + 2DIAGNOSTIC, 46, -9.110885961247e-01, 4.064137415213e-06, 2.7744e-01, 1.8971e-03, + 2DIAGNOSTIC, 47, -9.110886900254e-01, 2.972855893797e-06, 2.7891e-01, 1.4660e-03, + 2DIAGNOSTIC, 48, -9.110888296787e-01, 2.305330081789e-06, 2.8045e-01, 1.5380e-03, + 2DIAGNOSTIC, 49, -9.110894687769e-01, 1.880291509892e-06, 2.8200e-01, 1.5540e-03, + 2DIAGNOSTIC, 50, -9.110913252299e-01, 1.600417730910e-06, 2.8345e-01, 1.4470e-03, + 2DIAGNOSTIC, 51, -9.110952345399e-01, 1.331761893111e-06, 2.8477e-01, 1.3258e-03, + 2DIAGNOSTIC, 52, -9.111000792330e-01, 1.090838372075e-06, 2.8642e-01, 1.6491e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.716194881694e-01, 1.797693134862e+308, 4.9085e-01, 2.0443e-01, + 2DIAGNOSTIC, 2, -7.712253415736e-01, 1.797693134862e+308, 4.9350e-01, 2.6460e-03, + 2DIAGNOSTIC, 3, -7.730330636338e-01, 1.797693134862e+308, 4.9609e-01, 2.5890e-03, + 2DIAGNOSTIC, 4, -7.753849460540e-01, 1.797693134862e+308, 4.9862e-01, 2.5339e-03, + 2DIAGNOSTIC, 5, -7.776342386814e-01, 1.797693134862e+308, 5.0090e-01, 2.2781e-03, + 2DIAGNOSTIC, 6, -7.808569230888e-01, 1.797693134862e+308, 5.0320e-01, 2.2972e-03, + 2DIAGNOSTIC, 7, -7.839625976479e-01, 1.797693134862e+308, 5.0587e-01, 2.6691e-03, + 2DIAGNOSTIC, 8, -7.847739996415e-01, 1.797693134862e+308, 5.0878e-01, 2.9171e-03, + 2DIAGNOSTIC, 9, -7.849314632040e-01, 1.797693134862e+308, 5.1108e-01, 2.2981e-03, + 2DIAGNOSTIC, 10, -7.850415237968e-01, 1.396277618026e-03, 5.1415e-01, 3.0661e-03, + 2DIAGNOSTIC, 11, -7.851457468910e-01, 1.161804546621e-03, 5.1726e-01, 3.1168e-03, + 2DIAGNOSTIC, 12, -7.857265236375e-01, 8.668163782129e-04, 5.2046e-01, 3.1931e-03, + 2DIAGNOSTIC, 13, -7.863379355356e-01, 6.065108083653e-04, 5.2304e-01, 2.5778e-03, + 2DIAGNOSTIC, 14, -7.864629659170e-01, 3.934702371113e-04, 5.2571e-01, 2.6789e-03, + 2DIAGNOSTIC, 15, -7.863861298884e-01, 2.252594421370e-04, 5.2813e-01, 2.4209e-03, + 2DIAGNOSTIC, 16, -7.865489321403e-01, 1.331634162182e-04, 5.3065e-01, 2.5182e-03, + 2DIAGNOSTIC, 17, -7.865282988704e-01, 1.051018752747e-04, 5.3343e-01, 2.7721e-03, + 2DIAGNOSTIC, 18, -7.876155287496e-01, 1.086982941357e-04, 5.3642e-01, 2.9922e-03, + 2DIAGNOSTIC, 19, -7.871252347405e-01, 9.516773927942e-05, 5.3896e-01, 2.5382e-03, + 2DIAGNOSTIC, 20, -7.872182594052e-01, 7.874436966778e-05, 5.4151e-01, 2.5561e-03, + 2DIAGNOSTIC, 21, -7.873620415785e-01, 6.098766496818e-05, 5.4378e-01, 2.2662e-03, + 2DIAGNOSTIC, 22, -7.875265582112e-01, 5.105938002696e-05, 5.4713e-01, 3.3541e-03, + 2DIAGNOSTIC, 23, -7.875722017272e-01, 4.741306578208e-05, 5.4983e-01, 2.6982e-03, + 2DIAGNOSTIC, 24, -7.874140522534e-01, 3.942028309310e-05, 5.5220e-01, 2.3720e-03, + 2DIAGNOSTIC, 25, -7.872651899952e-01, 2.551469970122e-05, 5.5482e-01, 2.6190e-03, + 2DIAGNOSTIC, 26, -7.872867410974e-01, 1.305101094091e-05, 5.5709e-01, 2.2702e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.717235017290e-01, 1.797693134862e+308, 8.0073e-01, 2.4364e-01, + 2DIAGNOSTIC, 2, -6.728334581172e-01, 1.797693134862e+308, 8.1578e-01, 1.5049e-02, + 2DIAGNOSTIC, 3, -6.741357405789e-01, 1.797693134862e+308, 8.3015e-01, 1.4371e-02, + 2DIAGNOSTIC, 4, -6.752027515868e-01, 1.797693134862e+308, 8.4465e-01, 1.4506e-02, + 2DIAGNOSTIC, 5, -6.763633937265e-01, 1.797693134862e+308, 8.5916e-01, 1.4506e-02, + 2DIAGNOSTIC, 6, -6.778323912958e-01, 1.797693134862e+308, 8.7335e-01, 1.4191e-02, + 2DIAGNOSTIC, 7, -6.795319556980e-01, 1.797693134862e+308, 8.8969e-01, 1.6343e-02, + 2DIAGNOSTIC, 8, -6.818332600270e-01, 1.797693134862e+308, 9.1397e-01, 2.4273e-02, + 2DIAGNOSTIC, 9, -6.820416512004e-01, 1.797693134862e+308, 9.3205e-01, 1.8083e-02, + 2DIAGNOSTIC, 10, -6.820815735835e-01, 1.097081248334e-03, 9.4828e-01, 1.6231e-02, + 2DIAGNOSTIC, 11, -6.820966513005e-01, 9.117045722420e-04, 9.6452e-01, 1.6236e-02, + 2DIAGNOSTIC, 12, -6.820655804491e-01, 7.120732125425e-04, 9.8215e-01, 1.7635e-02, + 2DIAGNOSTIC, 13, -6.820337536634e-01, 5.190454069978e-04, 9.9595e-01, 1.3796e-02, + 2DIAGNOSTIC, 14, -6.820526631573e-01, 3.393242206763e-04, 1.0112e+00, 1.5289e-02, + 2DIAGNOSTIC, 15, -6.820791792395e-01, 1.864085592406e-04, 1.0276e+00, 1.6350e-02, + 2DIAGNOSTIC, 16, -6.820980704910e-01, 7.421864635095e-05, 1.0438e+00, 1.6181e-02, + 2DIAGNOSTIC, 17, -6.820930013791e-01, 8.808104143193e-06, 1.0574e+00, 1.3645e-02, + 2DIAGNOSTIC, 18, -6.821785822131e-01, 5.431227996004e-06, 1.0777e+00, 2.0259e-02, + 2DIAGNOSTIC, 19, -6.821763884230e-01, 6.523494368811e-06, 1.0928e+00, 1.5159e-02, + 2DIAGNOSTIC, 20, -6.821517536335e-01, 7.356913876197e-06, 1.1081e+00, 1.5261e-02, + 2DIAGNOSTIC, 21, -6.821229740184e-01, 7.350957880743e-06, 1.1214e+00, 1.3337e-02, + 2DIAGNOSTIC, 22, -6.821171981507e-01, 6.134483827185e-06, 1.1351e+00, 1.3692e-02, + 2DIAGNOSTIC, 23, -6.821373642955e-01, 4.339261846974e-06, 1.1485e+00, 1.3359e-02, + 2DIAGNOSTIC, 24, -6.821704444864e-01, 3.289113216759e-06, 1.1636e+00, 1.5160e-02, + 2DIAGNOSTIC, 25, -6.822158996265e-01, 3.350850334351e-06, 1.1799e+00, 1.6287e-02, + 2DIAGNOSTIC, 26, -6.823526219781e-01, 5.731800242013e-06, 1.1952e+00, 1.5281e-02, + 2DIAGNOSTIC, 27, -6.824746832895e-01, 9.235213178575e-06, 1.2088e+00, 1.3582e-02, + 2DIAGNOSTIC, 28, -6.827910109229e-01, 1.768933974662e-05, 1.2247e+00, 1.5886e-02, + 2DIAGNOSTIC, 29, -6.833216338691e-01, 3.151951642873e-05, 1.2424e+00, 1.7755e-02, + 2DIAGNOSTIC, 30, -6.837322208508e-01, 4.678393820237e-05, 1.2592e+00, 1.6754e-02, + 2DIAGNOSTIC, 31, -6.840771231629e-01, 6.095880546220e-05, 1.2753e+00, 1.6104e-02, + 2DIAGNOSTIC, 32, -6.848900736638e-01, 7.909818240721e-05, 1.2947e+00, 1.9456e-02, + 2DIAGNOSTIC, 33, -6.851979110464e-01, 9.263980240967e-05, 1.3081e+00, 1.3367e-02, + 2DIAGNOSTIC, 34, -6.855616294499e-01, 1.015127072286e-04, 1.3256e+00, 1.7472e-02, + 2DIAGNOSTIC, 35, -6.855829318931e-01, 1.011050228905e-04, 1.3391e+00, 1.3535e-02, + 2DIAGNOSTIC, 36, -6.858405247992e-01, 9.584612414741e-05, 1.3587e+00, 1.9560e-02, + 2DIAGNOSTIC, 37, -6.858476322820e-01, 8.314325222048e-05, 1.3789e+00, 2.0206e-02, + 2DIAGNOSTIC, 38, -6.858334826499e-01, 6.647282544395e-05, 1.3952e+00, 1.6280e-02, + 2DIAGNOSTIC, 39, -6.858367538581e-01, 5.014681826011e-05, 1.4094e+00, 1.4264e-02, + 2DIAGNOSTIC, 40, -6.858052058661e-01, 3.390983947240e-05, 1.4254e+00, 1.5978e-02, + 2DIAGNOSTIC, 41, -6.857908944957e-01, 1.849357197544e-05, 1.4389e+00, 1.3506e-02, + 2DIAGNOSTIC, 42, -6.857786687177e-01, 1.001854916976e-05, 1.4522e+00, 1.3304e-02, + 2DIAGNOSTIC, 43, -6.857871276460e-01, 4.061045656593e-06, 1.4654e+00, 1.3213e-02, + 2DIAGNOSTIC, 44, -6.857794709666e-01, 1.449854654469e-06, 1.4807e+00, 1.5249e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.723575738022e-01, 1.797693134862e+308, 1.9114e+00, 4.3070e-01, + 2DIAGNOSTIC, 2, -5.730926069795e-01, 1.797693134862e+308, 2.0054e+00, 9.4042e-02, + 2DIAGNOSTIC, 3, -5.736832949130e-01, 1.797693134862e+308, 2.1009e+00, 9.5505e-02, + 2DIAGNOSTIC, 4, -5.744034240015e-01, 1.797693134862e+308, 2.1962e+00, 9.5238e-02, + 2DIAGNOSTIC, 5, -5.751505814535e-01, 1.797693134862e+308, 2.2901e+00, 9.3952e-02, + 2DIAGNOSTIC, 6, -5.758215286960e-01, 1.797693134862e+308, 2.4158e+00, 1.2563e-01, + 2DIAGNOSTIC, 7, -5.760034380350e-01, 1.797693134862e+308, 2.5173e+00, 1.0153e-01, + 2DIAGNOSTIC, 8, -5.762195400260e-01, 1.797693134862e+308, 2.6265e+00, 1.0919e-01, + 2DIAGNOSTIC, 9, -5.768066424998e-01, 1.797693134862e+308, 2.7106e+00, 8.4122e-02, + 2DIAGNOSTIC, 10, -5.769239226298e-01, 5.196354699994e-04, 2.7963e+00, 8.5679e-02, + 2DIAGNOSTIC, 11, -5.774296451005e-01, 4.243890576347e-04, 2.9107e+00, 1.1440e-01, + 2DIAGNOSTIC, 12, -5.781992128705e-01, 3.689303732925e-04, 3.0190e+00, 1.0833e-01, + 2DIAGNOSTIC, 13, -5.790006579016e-01, 3.410022310493e-04, 3.1295e+00, 1.1046e-01, + 2DIAGNOSTIC, 14, -5.797836889625e-01, 3.383413465084e-04, 3.2394e+00, 1.0999e-01, + 2DIAGNOSTIC, 15, -5.800361936096e-01, 3.375747409185e-04, 3.3383e+00, 9.8803e-02, + 2DIAGNOSTIC, 16, -5.802501148695e-01, 3.337294558541e-04, 3.4255e+00, 8.7203e-02, + 2DIAGNOSTIC, 17, -5.806544967517e-01, 3.166342615469e-04, 3.5284e+00, 1.0294e-01, + 2DIAGNOSTIC, 18, -5.809534120621e-01, 2.856088223064e-04, 3.6392e+00, 1.1081e-01, + 2DIAGNOSTIC, 19, -5.811402511818e-01, 2.515749721282e-04, 3.7266e+00, 8.7396e-02, + 2DIAGNOSTIC, 20, -5.823250873775e-01, 2.298873839443e-04, 3.8444e+00, 1.1780e-01, + 2DIAGNOSTIC, 21, -5.830098932768e-01, 2.161385774034e-04, 3.9384e+00, 9.4005e-02, + 2DIAGNOSTIC, 22, -5.831629232121e-01, 2.037812722985e-04, 4.0453e+00, 1.0685e-01, + 2DIAGNOSTIC, 23, -5.833196403400e-01, 1.940583465237e-04, 4.1805e+00, 1.3525e-01, + 2DIAGNOSTIC, 24, -5.833491792924e-01, 1.837683027231e-04, 4.2856e+00, 1.0510e-01, + 2DIAGNOSTIC, 25, -5.833601065393e-01, 1.620418800968e-04, 4.4071e+00, 1.2154e-01, + 2DIAGNOSTIC, 26, -5.833614413030e-01, 1.305921475585e-04, 4.5166e+00, 1.0946e-01, + 2DIAGNOSTIC, 27, -5.833553846103e-01, 9.669242600604e-05, 4.6786e+00, 1.6203e-01, + 2DIAGNOSTIC, 28, -5.833562209027e-01, 6.177958614034e-05, 4.7865e+00, 1.0791e-01, + 2DIAGNOSTIC, 29, -5.833515240488e-01, 2.623432161139e-05, 4.8892e+00, 1.0261e-01, + 2DIAGNOSTIC, 30, -5.833525121749e-01, 9.833716337823e-06, 4.9982e+00, 1.0909e-01, + 2DIAGNOSTIC, 31, -5.833497056178e-01, 4.423264197785e-06, 5.1050e+00, 1.0673e-01, + 2DIAGNOSTIC, 32, -5.833489813751e-01, 1.306433326687e-06, 5.2136e+00, 1.0862e-01, + Elapsed time (stage 1): 5.3435e+00 + + +Total elapsed time: 1.0336e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:21:09 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:21:09 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5614c1ace4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5614c1ad3fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9dbb5f7010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5614c1acf850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5614c1accf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9db7f38010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5614c1ae6b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5614c1ad3550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9db4879010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5614c1aebd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5614c1ae9c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9db11ba010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x5614c1aedf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5614c1aec3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9dadafb010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5614c1aee540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.551, 65.2272, -108.821] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5614c1aee4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9daa43c010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.168481712603e-01, 1.797693134862e+308, 2.2156e-01, 2.2155e-01, + 2DIAGNOSTIC, 2, -6.198580345654e-01, 1.797693134862e+308, 2.2385e-01, 2.2900e-03, + 2DIAGNOSTIC, 3, -6.242573475754e-01, 1.797693134862e+308, 2.2613e-01, 2.2800e-03, + 2DIAGNOSTIC, 4, -6.314257709979e-01, 1.797693134862e+308, 2.2843e-01, 2.3050e-03, + 2DIAGNOSTIC, 5, -6.377520806514e-01, 1.797693134862e+308, 2.3046e-01, 2.0299e-03, + 2DIAGNOSTIC, 6, -6.410322711883e-01, 1.797693134862e+308, 2.3241e-01, 1.9481e-03, + 2DIAGNOSTIC, 7, -6.426417633691e-01, 1.797693134862e+308, 2.3439e-01, 1.9760e-03, + 2DIAGNOSTIC, 8, -6.436073963411e-01, 1.797693134862e+308, 2.3659e-01, 2.2092e-03, + 2DIAGNOSTIC, 9, -6.444444249179e-01, 1.797693134862e+308, 2.3962e-01, 3.0231e-03, + 2DIAGNOSTIC, 10, -6.452141796838e-01, 3.102237490753e-03, 2.4178e-01, 2.1589e-03, + 2DIAGNOSTIC, 11, -6.465310741459e-01, 2.324222161445e-03, 2.4388e-01, 2.1050e-03, + 2DIAGNOSTIC, 12, -6.473532785582e-01, 1.612624267093e-03, 2.4599e-01, 2.1081e-03, + 2DIAGNOSTIC, 13, -6.476577977228e-01, 1.024960439688e-03, 2.4810e-01, 2.1060e-03, + 2DIAGNOSTIC, 14, -6.482814187185e-01, 6.738706582045e-04, 2.5078e-01, 2.6822e-03, + 2DIAGNOSTIC, 15, -6.485460485030e-01, 5.020441216723e-04, 2.5344e-01, 2.6600e-03, + 2DIAGNOSTIC, 16, -6.484528846937e-01, 3.934819370359e-04, 2.5580e-01, 2.3651e-03, + 2DIAGNOSTIC, 17, -6.484557666709e-01, 3.037226845559e-04, 2.5794e-01, 2.1381e-03, + 2DIAGNOSTIC, 18, -6.484635519188e-01, 2.201709433235e-04, 2.6007e-01, 2.1310e-03, + 2DIAGNOSTIC, 19, -6.486104848754e-01, 1.480850263100e-04, 2.6218e-01, 2.1119e-03, + 2DIAGNOSTIC, 20, -6.486382021613e-01, 8.662141681338e-05, 2.6430e-01, 2.1172e-03, + 2DIAGNOSTIC, 21, -6.487314994877e-01, 5.272792916359e-05, 2.7122e-01, 6.9170e-03, + 2DIAGNOSTIC, 22, -6.487314992918e-01, 3.378194001916e-05, 2.7896e-01, 7.7438e-03, + 2DIAGNOSTIC, 23, -6.487314992918e-01, 1.904009146487e-05, 2.8231e-01, 3.3488e-03, + 2DIAGNOSTIC, 24, -6.487314992918e-01, 1.519731227965e-05, 2.8479e-01, 2.4831e-03, + 2DIAGNOSTIC, 25, -6.487314992918e-01, 1.506936540058e-05, 2.8727e-01, 2.4729e-03, + 2DIAGNOSTIC, 26, -6.487314992918e-01, 1.208408086756e-05, 2.8961e-01, 2.3439e-03, + 2DIAGNOSTIC, 27, -6.487314992918e-01, 8.374299010919e-06, 2.9193e-01, 2.3220e-03, + 2DIAGNOSTIC, 28, -6.487314992918e-01, 4.339650473757e-06, 2.9425e-01, 2.3160e-03, + 2DIAGNOSTIC, 29, -6.487314992918e-01, 2.526005668115e-06, 2.9653e-01, 2.2840e-03, + 2DIAGNOSTIC, 30, -6.487314992918e-01, 1.068373280129e-06, 2.9940e-01, 2.8679e-03, + 2DIAGNOSTIC, 31, -6.487314992918e-01, 1.033659414812e-06, 3.0177e-01, 2.3661e-03, + 2DIAGNOSTIC, 32, -6.487314992918e-01, 1.001127890934e-06, 3.0415e-01, 2.3801e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.440949368078e-01, 1.797693134862e+308, 5.3104e-01, 2.2690e-01, + 2DIAGNOSTIC, 2, -5.454124673116e-01, 1.797693134862e+308, 5.4443e-01, 1.3383e-02, + 2DIAGNOSTIC, 3, -5.465081309836e-01, 1.797693134862e+308, 5.5785e-01, 1.3421e-02, + 2DIAGNOSTIC, 4, -5.471451520619e-01, 1.797693134862e+308, 5.7125e-01, 1.3405e-02, + 2DIAGNOSTIC, 5, -5.474945725999e-01, 1.797693134862e+308, 5.8463e-01, 1.3382e-02, + 2DIAGNOSTIC, 6, -5.476485365625e-01, 1.797693134862e+308, 6.0004e-01, 1.5404e-02, + 2DIAGNOSTIC, 7, -5.479963913855e-01, 1.797693134862e+308, 6.2398e-01, 2.3946e-02, + 2DIAGNOSTIC, 8, -5.479695429290e-01, 1.797693134862e+308, 6.3740e-01, 1.3418e-02, + 2DIAGNOSTIC, 9, -5.480574937591e-01, 1.797693134862e+308, 6.5223e-01, 1.4830e-02, + 2DIAGNOSTIC, 10, -5.480893911871e-01, 4.060351118051e-04, 6.6744e-01, 1.5205e-02, + 2DIAGNOSTIC, 11, -5.480981750192e-01, 2.383884729570e-04, 6.8450e-01, 1.7058e-02, + 2DIAGNOSTIC, 12, -5.480923781931e-01, 1.334016070944e-04, 6.9822e-01, 1.3723e-02, + 2DIAGNOSTIC, 13, -5.480638702983e-01, 7.493958688051e-05, 7.1361e-01, 1.5387e-02, + 2DIAGNOSTIC, 14, -5.480517061592e-01, 4.131779483893e-05, 7.2769e-01, 1.4081e-02, + 2DIAGNOSTIC, 15, -5.480326520905e-01, 1.999866003716e-05, 7.4262e-01, 1.4937e-02, + 2DIAGNOSTIC, 16, -5.480343015200e-01, 4.459903693493e-06, 7.5806e-01, 1.5439e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.604550484238e-01, 1.797693134862e+308, 1.1282e+00, 3.7016e-01, + 2DIAGNOSTIC, 2, -4.608342082346e-01, 1.797693134862e+308, 1.2217e+00, 9.3468e-02, + 2DIAGNOSTIC, 3, -4.609485519513e-01, 1.797693134862e+308, 1.3139e+00, 9.2237e-02, + 2DIAGNOSTIC, 4, -4.610345056347e-01, 1.797693134862e+308, 1.4052e+00, 9.1290e-02, + 2DIAGNOSTIC, 5, -4.611996580508e-01, 1.797693134862e+308, 1.4980e+00, 9.2788e-02, + 2DIAGNOSTIC, 6, -4.614092418579e-01, 1.797693134862e+308, 1.6160e+00, 1.1796e-01, + 2DIAGNOSTIC, 7, -4.615240125794e-01, 1.797693134862e+308, 1.7735e+00, 1.5753e-01, + 2DIAGNOSTIC, 8, -4.615409413744e-01, 1.797693134862e+308, 1.8906e+00, 1.1709e-01, + 2DIAGNOSTIC, 9, -4.615379878417e-01, 1.797693134862e+308, 2.0490e+00, 1.5843e-01, + 2DIAGNOSTIC, 10, -4.615364386782e-01, 1.495558912250e-04, 2.1557e+00, 1.0666e-01, + 2DIAGNOSTIC, 11, -4.615358085663e-01, 1.007547122387e-04, 2.2366e+00, 8.0904e-02, + 2DIAGNOSTIC, 12, -4.615342963722e-01, 7.058646438665e-05, 2.3273e+00, 9.0755e-02, + 2DIAGNOSTIC, 13, -4.615350474648e-01, 4.449002877092e-05, 2.4205e+00, 9.3145e-02, + 2DIAGNOSTIC, 14, -4.615336013626e-01, 2.200675608241e-05, 2.5268e+00, 1.0629e-01, + 2DIAGNOSTIC, 15, -4.615334799691e-01, 7.323450892507e-06, 2.6333e+00, 1.0649e-01, + 2DIAGNOSTIC, 16, -4.615333099708e-01, 1.942808855557e-06, 2.7587e+00, 1.2538e-01, + 2DIAGNOSTIC, 17, -4.615324188511e-01, 1.306916778201e-06, 2.8659e+00, 1.0725e-01, + 2DIAGNOSTIC, 18, -4.615314029582e-01, 1.341108928785e-06, 2.9581e+00, 9.2153e-02, + 2DIAGNOSTIC, 19, -4.615306140724e-01, 1.291525815704e-06, 3.0606e+00, 1.0253e-01, + 2DIAGNOSTIC, 20, -4.615315508568e-01, 1.264150774775e-06, 3.1666e+00, 1.0599e-01, + 2DIAGNOSTIC, 21, -4.615315048890e-01, 1.249497273162e-06, 3.2739e+00, 1.0737e-01, + 2DIAGNOSTIC, 22, -4.615327743867e-01, 1.253585468347e-06, 3.3798e+00, 1.0588e-01, + 2DIAGNOSTIC, 23, -4.615325044053e-01, 1.289288402748e-06, 3.4861e+00, 1.0633e-01, + 2DIAGNOSTIC, 24, -4.615320814432e-01, 1.283456846475e-06, 3.5817e+00, 9.5526e-02, + 2DIAGNOSTIC, 25, -4.615322469284e-01, 1.283017863285e-06, 3.6863e+00, 1.0466e-01, + 2DIAGNOSTIC, 26, -4.615343118786e-01, 1.326033888985e-06, 3.7937e+00, 1.0732e-01, + 2DIAGNOSTIC, 27, -4.615303632329e-01, 1.244701932010e-06, 3.8980e+00, 1.0438e-01, + 2DIAGNOSTIC, 28, -4.615320787845e-01, 1.182172385497e-06, 3.9890e+00, 9.0930e-02, + 2DIAGNOSTIC, 29, -4.615335375023e-01, 1.132534991864e-06, 4.0930e+00, 1.0408e-01, + 2DIAGNOSTIC, 30, -4.615318178136e-01, 1.065103559697e-06, 4.1992e+00, 1.0615e-01, + 2DIAGNOSTIC, 31, -4.615349775857e-01, 1.064008830355e-06, 4.2958e+00, 9.6587e-02, + 2DIAGNOSTIC, 32, -4.615359579531e-01, 1.102150322924e-06, 4.4050e+00, 1.0918e-01, + 2DIAGNOSTIC, 33, -4.615397569867e-01, 1.193804357147e-06, 4.5102e+00, 1.0524e-01, + 2DIAGNOSTIC, 34, -4.615414577180e-01, 1.279341277138e-06, 4.6159e+00, 1.0569e-01, + 2DIAGNOSTIC, 35, -4.615457521101e-01, 1.404872859705e-06, 4.7192e+00, 1.0330e-01, + 2DIAGNOSTIC, 36, -4.615547035737e-01, 1.665891682417e-06, 4.8133e+00, 9.4096e-02, + 2DIAGNOSTIC, 37, -4.615673774119e-01, 1.978955100179e-06, 4.9060e+00, 9.2753e-02, + 2DIAGNOSTIC, 38, -4.615903943042e-01, 2.565434961230e-06, 4.9971e+00, 9.1072e-02, + 2DIAGNOSTIC, 39, -4.616315143494e-01, 3.624533160315e-06, 5.0862e+00, 8.9079e-02, + 2DIAGNOSTIC, 40, -4.616845158615e-01, 5.139707324988e-06, 5.1794e+00, 9.3249e-02, + 2DIAGNOSTIC, 41, -4.619787100899e-01, 1.062052747459e-05, 5.2830e+00, 1.0351e-01, + 2DIAGNOSTIC, 42, -4.620648069073e-01, 1.606749493825e-05, 5.5187e+00, 2.3573e-01, + 2DIAGNOSTIC, 43, -4.620662488287e-01, 1.989476488148e-05, 5.6236e+00, 1.0492e-01, + 2DIAGNOSTIC, 44, -4.620670810571e-01, 2.182238234271e-05, 5.7313e+00, 1.0766e-01, + 2DIAGNOSTIC, 45, -4.620619766756e-01, 2.162861419105e-05, 5.8407e+00, 1.0941e-01, + 2DIAGNOSTIC, 46, -4.620657645037e-01, 1.954877128888e-05, 5.9485e+00, 1.0782e-01, + 2DIAGNOSTIC, 47, -4.620635186649e-01, 1.586253452197e-05, 6.0540e+00, 1.0547e-01, + 2DIAGNOSTIC, 48, -4.620630710531e-01, 1.121570669163e-05, 6.1599e+00, 1.0591e-01, + 2DIAGNOSTIC, 49, -4.620643603100e-01, 6.324306332278e-06, 6.2787e+00, 1.1884e-01, + 2DIAGNOSTIC, 50, -4.620630514699e-01, 1.630457017003e-06, 6.3847e+00, 1.0603e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.957203530048e-01, 1.797693134862e+308, 7.7974e+00, 1.4127e+00, + 2DIAGNOSTIC, 2, -3.957312833781e-01, 1.797693134862e+308, 8.6329e+00, 8.3554e-01, + 2DIAGNOSTIC, 3, -3.957307432413e-01, 1.797693134862e+308, 9.3809e+00, 7.4792e-01, + 2DIAGNOSTIC, 4, -3.957314693296e-01, 1.797693134862e+308, 1.0123e+01, 7.4252e-01, + 2DIAGNOSTIC, 5, -3.957314880480e-01, 1.797693134862e+308, 1.0789e+01, 6.6566e-01, + 2DIAGNOSTIC, 6, -3.957312252797e-01, 1.797693134862e+308, 1.1321e+01, 5.3228e-01, + 2DIAGNOSTIC, 7, -3.957310463566e-01, 1.797693134862e+308, 1.1891e+01, 5.6978e-01, + 2DIAGNOSTIC, 8, -3.957310096127e-01, 1.797693134862e+308, 1.2430e+01, 5.3864e-01, + 2DIAGNOSTIC, 9, -3.957310458189e-01, 1.797693134862e+308, 1.3112e+01, 6.8266e-01, + 2DIAGNOSTIC, 10, -3.957311430247e-01, 3.937168301132e-06, 1.3811e+01, 6.9839e-01, + 2DIAGNOSTIC, 11, -3.957310447105e-01, 2.863107541148e-06, 1.4361e+01, 5.5068e-01, + 2DIAGNOSTIC, 12, -3.957306920122e-01, 2.605691058019e-06, 1.4903e+01, 5.4122e-01, + 2DIAGNOSTIC, 13, -3.957308183693e-01, 2.368361489716e-06, 1.5502e+01, 5.9934e-01, + 2DIAGNOSTIC, 14, -3.957308562977e-01, 2.210396869359e-06, 1.6177e+01, 6.7465e-01, + 2DIAGNOSTIC, 15, -3.957306534040e-01, 2.070220600031e-06, 1.6780e+01, 6.0363e-01, + 2DIAGNOSTIC, 16, -3.957305832426e-01, 1.937976056354e-06, 1.7383e+01, 6.0293e-01, + 2DIAGNOSTIC, 17, -3.957303621163e-01, 1.809390303593e-06, 1.7934e+01, 5.5030e-01, + 2DIAGNOSTIC, 18, -3.957304698314e-01, 1.703621101030e-06, 1.8547e+01, 6.1386e-01, + 2DIAGNOSTIC, 19, -3.957304808216e-01, 1.616021668240e-06, 1.9159e+01, 6.1151e-01, + 2DIAGNOSTIC, 20, -3.957305799315e-01, 1.549694130118e-06, 1.9842e+01, 6.8294e-01, + 2DIAGNOSTIC, 21, -3.957301922500e-01, 1.477346242680e-06, 2.0462e+01, 6.2004e-01, + 2DIAGNOSTIC, 22, -3.957302178391e-01, 1.404702420160e-06, 2.0954e+01, 4.9211e-01, + 2DIAGNOSTIC, 23, -3.957301186448e-01, 1.342782488423e-06, 2.1501e+01, 5.4735e-01, + 2DIAGNOSTIC, 24, -3.957300041125e-01, 1.287421119593e-06, 2.1982e+01, 4.8019e-01, + 2DIAGNOSTIC, 25, -3.957299088273e-01, 1.231586505231e-06, 2.2537e+01, 5.5547e-01, + 2DIAGNOSTIC, 26, -3.957299760928e-01, 1.184181182820e-06, 2.3048e+01, 5.1113e-01, + 2DIAGNOSTIC, 27, -3.957300897647e-01, 1.140998755610e-06, 2.3635e+01, 5.8666e-01, + 2DIAGNOSTIC, 28, -3.957301630241e-01, 1.108855749214e-06, 2.4161e+01, 5.2632e-01, + 2DIAGNOSTIC, 29, -3.957298596134e-01, 1.074157285924e-06, 2.4675e+01, 5.1341e-01, + 2DIAGNOSTIC, 30, -3.957299260728e-01, 1.048436180269e-06, 2.5312e+01, 6.3714e-01, + 2DIAGNOSTIC, 31, -3.957300099066e-01, 1.018243963084e-06, 2.5842e+01, 5.2987e-01, + Elapsed time (stage 0): 2.6207e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.383606314654e-01, 1.797693134862e+308, 1.7837e-01, 1.7837e-01, + 2DIAGNOSTIC, 2, -6.395134417192e-01, 1.797693134862e+308, 1.8025e-01, 1.8730e-03, + 2DIAGNOSTIC, 3, -6.411734839191e-01, 1.797693134862e+308, 1.8230e-01, 2.0511e-03, + 2DIAGNOSTIC, 4, -6.430158733873e-01, 1.797693134862e+308, 1.8417e-01, 1.8680e-03, + 2DIAGNOSTIC, 5, -6.444324652469e-01, 1.797693134862e+308, 1.8600e-01, 1.8311e-03, + 2DIAGNOSTIC, 6, -6.460240386599e-01, 1.797693134862e+308, 1.8784e-01, 1.8470e-03, + 2DIAGNOSTIC, 7, -6.474592631474e-01, 1.797693134862e+308, 1.8999e-01, 2.1472e-03, + 2DIAGNOSTIC, 8, -6.482956568488e-01, 1.797693134862e+308, 1.9357e-01, 3.5760e-03, + 2DIAGNOSTIC, 9, -6.483077704725e-01, 1.797693134862e+308, 1.9538e-01, 1.8082e-03, + 2DIAGNOSTIC, 10, -6.483702421621e-01, 1.106976131186e-03, 1.9735e-01, 1.9760e-03, + 2DIAGNOSTIC, 11, -6.484403908778e-01, 8.431069229334e-04, 1.9934e-01, 1.9851e-03, + 2DIAGNOSTIC, 12, -6.485149401122e-01, 5.918443269888e-04, 2.0130e-01, 1.9672e-03, + 2DIAGNOSTIC, 13, -6.485970575001e-01, 3.842521520011e-04, 2.0338e-01, 2.0730e-03, + 2DIAGNOSTIC, 14, -6.487044173920e-01, 2.330272448592e-04, 2.0541e-01, 2.0320e-03, + 2DIAGNOSTIC, 15, -6.488189411550e-01, 1.254148931552e-04, 2.0744e-01, 2.0280e-03, + 2DIAGNOSTIC, 16, -6.490113528870e-01, 6.814499484012e-05, 2.0978e-01, 2.3439e-03, + 2DIAGNOSTIC, 17, -6.492001541356e-01, 5.286701294639e-05, 2.1341e-01, 3.6261e-03, + 2DIAGNOSTIC, 18, -6.492032530651e-01, 5.504807617766e-05, 2.1548e-01, 2.0752e-03, + 2DIAGNOSTIC, 19, -6.492164731463e-01, 5.271941841774e-05, 2.1753e-01, 2.0499e-03, + 2DIAGNOSTIC, 20, -6.492349170062e-01, 4.765861467721e-05, 2.1959e-01, 2.0611e-03, + 2DIAGNOSTIC, 21, -6.492598982074e-01, 4.069595323813e-05, 2.2163e-01, 2.0390e-03, + 2DIAGNOSTIC, 22, -6.492899045109e-01, 3.273152041901e-05, 2.2370e-01, 2.0719e-03, + 2DIAGNOSTIC, 23, -6.493203172095e-01, 2.469197158418e-05, 2.2580e-01, 2.0921e-03, + 2DIAGNOSTIC, 24, -6.493502647627e-01, 1.768434174802e-05, 2.2816e-01, 2.3620e-03, + 2DIAGNOSTIC, 25, -6.494102541068e-01, 1.270482700034e-05, 2.3074e-01, 2.5840e-03, + 2DIAGNOSTIC, 26, -6.494162196488e-01, 1.027303284955e-05, 2.3309e-01, 2.3510e-03, + 2DIAGNOSTIC, 27, -6.494249568725e-01, 1.039325996085e-05, 2.3671e-01, 3.6190e-03, + 2DIAGNOSTIC, 28, -6.494251320929e-01, 9.692351216305e-06, 2.3881e-01, 2.0969e-03, + 2DIAGNOSTIC, 29, -6.494272144953e-01, 8.458013127918e-06, 2.4091e-01, 2.1009e-03, + 2DIAGNOSTIC, 30, -6.494292081104e-01, 6.896058976691e-06, 2.4321e-01, 2.2979e-03, + 2DIAGNOSTIC, 31, -6.494298737723e-01, 5.240563188409e-06, 2.4525e-01, 2.0399e-03, + 2DIAGNOSTIC, 32, -6.494304432379e-01, 3.713631869705e-06, 2.4729e-01, 2.0440e-03, + 2DIAGNOSTIC, 33, -6.494326725177e-01, 2.455032042915e-06, 2.4965e-01, 2.3551e-03, + 2DIAGNOSTIC, 34, -6.494367197561e-01, 1.547410747260e-06, 2.5177e-01, 2.1279e-03, + 2DIAGNOSTIC, 35, -6.494419509924e-01, 1.449019419515e-06, 2.5385e-01, 2.0759e-03, + 2DIAGNOSTIC, 36, -6.494485714200e-01, 1.454657890653e-06, 2.5596e-01, 2.1110e-03, + 2DIAGNOSTIC, 37, -6.494690254279e-01, 1.751565086094e-06, 2.5882e-01, 2.8589e-03, + 2DIAGNOSTIC, 38, -6.494695037668e-01, 1.949842080212e-06, 2.6118e-01, 2.3549e-03, + 2DIAGNOSTIC, 39, -6.494717177529e-01, 2.082678034560e-06, 2.6455e-01, 3.3700e-03, + 2DIAGNOSTIC, 40, -6.494718780592e-01, 2.113697775107e-06, 2.6783e-01, 3.2871e-03, + 2DIAGNOSTIC, 41, -6.494718790337e-01, 2.023594535733e-06, 2.7113e-01, 3.3000e-03, + 2DIAGNOSTIC, 42, -6.494718790478e-01, 1.822007882440e-06, 2.7440e-01, 3.2668e-03, + 2DIAGNOSTIC, 43, -6.494718790480e-01, 1.550625868596e-06, 2.7742e-01, 3.0181e-03, + 2DIAGNOSTIC, 44, -6.494718790480e-01, 1.256800686404e-06, 2.8073e-01, 3.3121e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.427679484703e-01, 1.797693134862e+308, 4.8570e-01, 2.0497e-01, + 2DIAGNOSTIC, 2, -5.451579192813e-01, 1.797693134862e+308, 4.9992e-01, 1.4217e-02, + 2DIAGNOSTIC, 3, -5.477462339292e-01, 1.797693134862e+308, 5.1409e-01, 1.4169e-02, + 2DIAGNOSTIC, 4, -5.496526906899e-01, 1.797693134862e+308, 5.2837e-01, 1.4281e-02, + 2DIAGNOSTIC, 5, -5.502126755046e-01, 1.797693134862e+308, 5.4376e-01, 1.5391e-02, + 2DIAGNOSTIC, 6, -5.511329805259e-01, 1.797693134862e+308, 5.6089e-01, 1.7126e-02, + 2DIAGNOSTIC, 7, -5.518394332154e-01, 1.797693134862e+308, 5.8560e-01, 2.4716e-02, + 2DIAGNOSTIC, 8, -5.518931364787e-01, 1.797693134862e+308, 5.9926e-01, 1.3661e-02, + 2DIAGNOSTIC, 9, -5.520096309972e-01, 1.797693134862e+308, 6.1332e-01, 1.4056e-02, + 2DIAGNOSTIC, 10, -5.520953943513e-01, 1.006551165332e-03, 6.2721e-01, 1.3890e-02, + 2DIAGNOSTIC, 11, -5.521251544670e-01, 6.291034784032e-04, 6.4205e-01, 1.4840e-02, + 2DIAGNOSTIC, 12, -5.521767485659e-01, 3.614528380506e-04, 6.5765e-01, 1.5604e-02, + 2DIAGNOSTIC, 13, -5.521988837926e-01, 2.050448006144e-04, 6.7152e-01, 1.3870e-02, + 2DIAGNOSTIC, 14, -5.522973612047e-01, 1.268030897078e-04, 6.8712e-01, 1.5598e-02, + 2DIAGNOSTIC, 15, -5.523097244172e-01, 6.665564136364e-05, 7.0276e-01, 1.5636e-02, + 2DIAGNOSTIC, 16, -5.523378336387e-01, 3.817232803004e-05, 7.5097e-01, 4.8214e-02, + 2DIAGNOSTIC, 17, -5.523378315721e-01, 3.120574513646e-05, 7.6570e-01, 1.4731e-02, + 2DIAGNOSTIC, 18, -5.523378352927e-01, 2.378279658693e-05, 7.8078e-01, 1.5075e-02, + 2DIAGNOSTIC, 19, -5.523378415831e-01, 1.819766671790e-05, 7.9551e-01, 1.4731e-02, + 2DIAGNOSTIC, 20, -5.523378522141e-01, 1.383612686993e-05, 8.1087e-01, 1.5364e-02, + 2DIAGNOSTIC, 21, -5.523378701744e-01, 9.479177844808e-06, 8.2573e-01, 1.4862e-02, + 2DIAGNOSTIC, 22, -5.523379004985e-01, 6.001672878855e-06, 8.4059e-01, 1.4854e-02, + 2DIAGNOSTIC, 23, -5.523379517621e-01, 2.849177355872e-06, 8.5547e-01, 1.4883e-02, + 2DIAGNOSTIC, 24, -5.523380382458e-01, 1.940408816403e-06, 8.7005e-01, 1.4578e-02, + 2DIAGNOSTIC, 25, -5.523381832180e-01, 1.288366309027e-06, 8.8477e-01, 1.4721e-02, + 2DIAGNOSTIC, 26, -5.523384250060e-01, 1.247528269605e-06, 8.9898e-01, 1.4212e-02, + 2DIAGNOSTIC, 27, -5.523388249347e-01, 1.215204324716e-06, 9.1310e-01, 1.4117e-02, + 2DIAGNOSTIC, 28, -5.523394554391e-01, 1.193462284069e-06, 9.2738e-01, 1.4275e-02, + 2DIAGNOSTIC, 29, -5.523404479959e-01, 1.185565411579e-06, 9.4212e-01, 1.4746e-02, + 2DIAGNOSTIC, 30, -5.523420079601e-01, 1.196692288069e-06, 9.5816e-01, 1.6035e-02, + 2DIAGNOSTIC, 31, -5.523431705564e-01, 1.213545758889e-06, 9.7226e-01, 1.4105e-02, + 2DIAGNOSTIC, 32, -5.523313510412e-01, 1.021773813469e-06, 9.8631e-01, 1.4045e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.594628417276e-01, 1.797693134862e+308, 1.3695e+00, 3.8322e-01, + 2DIAGNOSTIC, 2, -4.601790348611e-01, 1.797693134862e+308, 1.4704e+00, 1.0089e-01, + 2DIAGNOSTIC, 3, -4.608278113624e-01, 1.797693134862e+308, 1.5713e+00, 1.0090e-01, + 2DIAGNOSTIC, 4, -4.612872459850e-01, 1.797693134862e+308, 1.6581e+00, 8.6792e-02, + 2DIAGNOSTIC, 5, -4.615933482656e-01, 1.797693134862e+308, 1.7554e+00, 9.7313e-02, + 2DIAGNOSTIC, 6, -4.618853434283e-01, 1.797693134862e+308, 1.8559e+00, 1.0045e-01, + 2DIAGNOSTIC, 7, -4.620719837564e-01, 1.797693134862e+308, 2.0104e+00, 1.5458e-01, + 2DIAGNOSTIC, 8, -4.621543028963e-01, 1.797693134862e+308, 2.1092e+00, 9.8743e-02, + 2DIAGNOSTIC, 9, -4.622095425089e-01, 1.797693134862e+308, 2.2107e+00, 1.0150e-01, + 2DIAGNOSTIC, 10, -4.623248727465e-01, 3.716468919993e-04, 2.3920e+00, 1.8129e-01, + 2DIAGNOSTIC, 11, -4.623319583023e-01, 2.492952997502e-04, 2.4911e+00, 9.9139e-02, + 2DIAGNOSTIC, 12, -4.623804295768e-01, 1.639756559074e-04, 2.5893e+00, 9.8234e-02, + 2DIAGNOSTIC, 13, -4.624083028570e-01, 1.089802286915e-04, 2.7018e+00, 1.1247e-01, + 2DIAGNOSTIC, 14, -4.624150024598e-01, 7.250012750433e-05, 2.8011e+00, 9.9331e-02, + 2DIAGNOSTIC, 15, -4.624200356200e-01, 4.700113895803e-05, 2.9012e+00, 1.0004e-01, + 2DIAGNOSTIC, 16, -4.624332290840e-01, 3.217239920592e-05, 3.0049e+00, 1.0374e-01, + 2DIAGNOSTIC, 17, -4.624439389704e-01, 2.342142137844e-05, 3.1102e+00, 1.0526e-01, + 2DIAGNOSTIC, 18, -4.624886454777e-01, 1.796804352983e-05, 3.2297e+00, 1.1953e-01, + 2DIAGNOSTIC, 19, -4.624976658433e-01, 1.355289259931e-05, 3.3732e+00, 1.4351e-01, + 2DIAGNOSTIC, 20, -4.624998050484e-01, 1.212492671456e-05, 3.4758e+00, 1.0260e-01, + 2DIAGNOSTIC, 21, -4.625035666717e-01, 1.015659464131e-05, 3.5775e+00, 1.0172e-01, + 2DIAGNOSTIC, 22, -4.625442636994e-01, 1.002705929491e-05, 3.6775e+00, 9.9913e-02, + 2DIAGNOSTIC, 23, -4.625603834992e-01, 1.023388277555e-05, 3.8609e+00, 1.8346e-01, + 2DIAGNOSTIC, 24, -4.625689641268e-01, 9.984362071308e-06, 3.9729e+00, 1.1195e-01, + 2DIAGNOSTIC, 25, -4.625693156061e-01, 9.099194546260e-06, 4.0874e+00, 1.1456e-01, + 2DIAGNOSTIC, 26, -4.625671018423e-01, 7.818048648155e-06, 4.1895e+00, 1.0206e-01, + 2DIAGNOSTIC, 27, -4.625687547977e-01, 6.253966176116e-06, 4.3044e+00, 1.1487e-01, + 2DIAGNOSTIC, 28, -4.625700426722e-01, 5.318084254698e-06, 4.6505e+00, 3.4612e-01, + 2DIAGNOSTIC, 29, -4.625700426692e-01, 4.251505801557e-06, 4.9949e+00, 3.4445e-01, + 2DIAGNOSTIC, 30, -4.625700426692e-01, 3.015279052991e-06, 5.1000e+00, 1.0506e-01, + 2DIAGNOSTIC, 31, -4.625700426692e-01, 1.733036272107e-06, 5.1975e+00, 9.7504e-02, + 2DIAGNOSTIC, 32, -4.625700426692e-01, 1.238956367625e-06, 5.3057e+00, 1.0823e-01, + 2DIAGNOSTIC, 33, -4.625700426692e-01, 1.046391138744e-06, 5.4110e+00, 1.0530e-01, + 2DIAGNOSTIC, 34, -4.625700426692e-01, 1.012340275188e-06, 5.5281e+00, 1.1708e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.951403534811e-01, 1.797693134862e+308, 6.7495e+00, 1.2214e+00, + 2DIAGNOSTIC, 2, -3.953632072134e-01, 1.797693134862e+308, 7.3067e+00, 5.5720e-01, + 2DIAGNOSTIC, 3, -3.955741454476e-01, 1.797693134862e+308, 8.1408e+00, 8.3407e-01, + 2DIAGNOSTIC, 4, -3.957249138870e-01, 1.797693134862e+308, 8.7407e+00, 5.9992e-01, + 2DIAGNOSTIC, 5, -3.957453763400e-01, 1.797693134862e+308, 9.3097e+00, 5.6903e-01, + 2DIAGNOSTIC, 6, -3.958110894836e-01, 1.797693134862e+308, 9.9008e+00, 5.9114e-01, + 2DIAGNOSTIC, 7, -3.959088958320e-01, 1.797693134862e+308, 1.0948e+01, 1.0470e+00, + 2DIAGNOSTIC, 8, -3.959086803143e-01, 1.797693134862e+308, 1.1651e+01, 7.0346e-01, + 2DIAGNOSTIC, 9, -3.959084503748e-01, 1.797693134862e+308, 1.2434e+01, 7.8248e-01, + 2DIAGNOSTIC, 10, -3.959084804341e-01, 1.163831090830e-04, 1.3113e+01, 6.7958e-01, + 2DIAGNOSTIC, 11, -3.959083054682e-01, 7.199946668943e-05, 1.3863e+01, 7.4987e-01, + 2DIAGNOSTIC, 12, -3.959082218919e-01, 4.180613095532e-05, 1.4466e+01, 6.0247e-01, + 2DIAGNOSTIC, 13, -3.959078922564e-01, 2.417328748817e-05, 1.5140e+01, 6.7378e-01, + 2DIAGNOSTIC, 14, -3.959078867089e-01, 1.491353441677e-05, 1.5769e+01, 6.2934e-01, + 2DIAGNOSTIC, 15, -3.959078313277e-01, 6.677720282830e-06, 1.6373e+01, 6.0409e-01, + 2DIAGNOSTIC, 16, -3.959077450033e-01, 1.873133930422e-06, 1.6921e+01, 5.4836e-01, + 2DIAGNOSTIC, 17, -3.959075540271e-01, 1.768337706307e-06, 1.7575e+01, 6.5333e-01, + 2DIAGNOSTIC, 18, -3.959075044362e-01, 1.674705401279e-06, 1.8235e+01, 6.6059e-01, + 2DIAGNOSTIC, 19, -3.959074942599e-01, 1.590285633069e-06, 1.8821e+01, 5.8614e-01, + 2DIAGNOSTIC, 20, -3.959075732990e-01, 1.525942238692e-06, 1.9500e+01, 6.7828e-01, + 2DIAGNOSTIC, 21, -3.959077129997e-01, 1.472490137183e-06, 2.0136e+01, 6.3620e-01, + 2DIAGNOSTIC, 22, -3.959075923791e-01, 1.421509897140e-06, 2.0719e+01, 5.8301e-01, + 2DIAGNOSTIC, 23, -3.959070728887e-01, 1.350960856919e-06, 2.1419e+01, 7.0027e-01, + 2DIAGNOSTIC, 24, -3.959068626848e-01, 1.283268394749e-06, 2.2154e+01, 7.3479e-01, + 2DIAGNOSTIC, 25, -3.959068963652e-01, 1.224219700169e-06, 2.2830e+01, 6.7616e-01, + 2DIAGNOSTIC, 26, -3.959067877734e-01, 1.168626759758e-06, 2.3431e+01, 6.0134e-01, + 2DIAGNOSTIC, 27, -3.959067020012e-01, 1.115144254313e-06, 2.4033e+01, 6.0177e-01, + 2DIAGNOSTIC, 28, -3.959066549274e-01, 1.069358068949e-06, 2.4710e+01, 6.7697e-01, + 2DIAGNOSTIC, 29, -3.959066483388e-01, 1.032669056114e-06, 2.5389e+01, 6.7888e-01, + 2DIAGNOSTIC, 30, -3.959064975435e-01, 1.002439645431e-06, 2.6066e+01, 6.7701e-01, + Elapsed time (stage 1): 2.6445e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.066501032019e-01, 1.797693134862e+308, 2.6555e-01, 2.6555e-01, + 1DIAGNOSTIC, 2, -9.154808533559e-01, 1.797693134862e+308, 3.6557e-01, 1.0001e-01, + 1DIAGNOSTIC, 3, -9.228587208243e-01, 1.797693134862e+308, 4.6601e-01, 1.0045e-01, + 1DIAGNOSTIC, 4, -9.289326221005e-01, 1.797693134862e+308, 5.6508e-01, 9.9067e-02, + 1DIAGNOSTIC, 5, -9.341519830042e-01, 1.797693134862e+308, 6.6311e-01, 9.8031e-02, + 1DIAGNOSTIC, 6, -9.379866420482e-01, 1.797693134862e+308, 7.6253e-01, 9.9421e-02, + 1DIAGNOSTIC, 7, -9.414086330522e-01, 1.797693134862e+308, 8.5772e-01, 9.5191e-02, + 1DIAGNOSTIC, 8, -9.443856482714e-01, 1.797693134862e+308, 9.5378e-01, 9.6053e-02, + 1DIAGNOSTIC, 9, -9.470469204134e-01, 1.797693134862e+308, 1.0530e+00, 9.9213e-02, + 1DIAGNOSTIC, 10, -9.494190084991e-01, 2.803672137346e-03, 1.1474e+00, 9.4368e-02, + 1DIAGNOSTIC, 11, -9.514455806390e-01, 2.138097384585e-03, 1.2436e+00, 9.6236e-02, + 1DIAGNOSTIC, 12, -9.532715108385e-01, 1.660429423961e-03, 1.3435e+00, 9.9862e-02, + 1DIAGNOSTIC, 13, -9.547088236184e-01, 1.310869488022e-03, 1.4416e+00, 9.8133e-02, + 1DIAGNOSTIC, 14, -9.558646551633e-01, 1.047530234269e-03, 1.5403e+00, 9.8734e-02, + 1DIAGNOSTIC, 15, -9.568531103455e-01, 8.483775592165e-04, 1.6314e+00, 9.1115e-02, + 1DIAGNOSTIC, 16, -9.576163157035e-01, 6.826458585960e-04, 1.7242e+00, 9.2721e-02, + 1DIAGNOSTIC, 17, -9.583692646961e-01, 5.473208351867e-04, 1.8195e+00, 9.5392e-02, + 1DIAGNOSTIC, 18, -9.588242304274e-01, 4.336117650126e-04, 1.9193e+00, 9.9755e-02, + 1DIAGNOSTIC, 19, -9.591199667258e-01, 3.383988871812e-04, 2.0181e+00, 9.8841e-02, + 1DIAGNOSTIC, 20, -9.590377836824e-01, 2.556281219130e-04, 2.1169e+00, 9.8752e-02, + 1DIAGNOSTIC, 21, -9.589674278244e-01, 1.848953996781e-04, 2.2222e+00, 1.0531e-01, + 1DIAGNOSTIC, 22, -9.589249398516e-01, 1.276196175489e-04, 2.3196e+00, 9.7422e-02, + 1DIAGNOSTIC, 23, -9.588189456942e-01, 8.069510721773e-05, 2.4200e+00, 1.0033e-01, + 1DIAGNOSTIC, 24, -9.587809191790e-01, 4.412957780732e-05, 2.5285e+00, 1.0849e-01, + 1DIAGNOSTIC, 25, -9.586872189356e-01, 1.717503371656e-05, 2.6358e+00, 1.0731e-01, + 1DIAGNOSTIC, 26, -9.586475442848e-01, -9.380402514608e-07, 2.7391e+00, 1.0330e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.167712767826e-01, 1.797693134862e+308, 3.5596e+00, 8.2050e-01, + 1DIAGNOSTIC, 2, -9.207117492642e-01, 1.797693134862e+308, 4.2238e+00, 6.6425e-01, + 1DIAGNOSTIC, 3, -9.244639249688e-01, 1.797693134862e+308, 4.8813e+00, 6.5748e-01, + 1DIAGNOSTIC, 4, -9.274618591455e-01, 1.797693134862e+308, 5.5342e+00, 6.5290e-01, + 1DIAGNOSTIC, 5, -9.306576123630e-01, 1.797693134862e+308, 6.1953e+00, 6.6108e-01, + 1DIAGNOSTIC, 6, -9.335508915636e-01, 1.797693134862e+308, 6.8501e+00, 6.5481e-01, + 1DIAGNOSTIC, 7, -9.359947390216e-01, 1.797693134862e+308, 7.5069e+00, 6.5677e-01, + 1DIAGNOSTIC, 8, -9.380998764552e-01, 1.797693134862e+308, 8.1650e+00, 6.5813e-01, + 1DIAGNOSTIC, 9, -9.397952030526e-01, 1.797693134862e+308, 8.8246e+00, 6.5958e-01, + 1DIAGNOSTIC, 10, -9.412445430270e-01, 1.687915604679e-03, 9.4783e+00, 6.5374e-01, + 1DIAGNOSTIC, 11, -9.424647457911e-01, 1.360019795865e-03, 1.0148e+01, 6.6923e-01, + 1DIAGNOSTIC, 12, -9.434246481563e-01, 1.088341831986e-03, 1.0805e+01, 6.5738e-01, + 1DIAGNOSTIC, 13, -9.442639150846e-01, 8.674547216549e-04, 1.1443e+01, 6.3838e-01, + 1DIAGNOSTIC, 14, -9.450164131704e-01, 6.802652649271e-04, 1.2092e+01, 6.4900e-01, + 1DIAGNOSTIC, 15, -9.456985891637e-01, 5.339618392278e-04, 1.2755e+01, 6.6268e-01, + 1DIAGNOSTIC, 16, -9.463002937370e-01, 4.228892192781e-04, 1.3399e+01, 6.4435e-01, + 1DIAGNOSTIC, 17, -9.468189590847e-01, 3.385070079482e-04, 1.4045e+01, 6.4559e-01, + 1DIAGNOSTIC, 18, -9.472878338218e-01, 2.753994536681e-04, 1.4719e+01, 6.7365e-01, + 1DIAGNOSTIC, 19, -9.477036383775e-01, 2.269012847558e-04, 1.5360e+01, 6.4126e-01, + 1DIAGNOSTIC, 20, -9.480661676100e-01, 1.894574917625e-04, 1.6028e+01, 6.6789e-01, + 1DIAGNOSTIC, 21, -9.483965462799e-01, 1.602230201216e-04, 1.6704e+01, 6.7624e-01, + 1DIAGNOSTIC, 22, -9.486963579867e-01, 1.359814404882e-04, 1.7367e+01, 6.6269e-01, + 1DIAGNOSTIC, 23, -9.489589875469e-01, 1.155972937565e-04, 1.8020e+01, 6.5360e-01, + 1DIAGNOSTIC, 24, -9.492006560816e-01, 9.859253320996e-05, 1.8688e+01, 6.6793e-01, + 1DIAGNOSTIC, 25, -9.494249246606e-01, 8.465420465851e-05, 1.9354e+01, 6.6547e-01, + 1DIAGNOSTIC, 26, -9.496285311460e-01, 7.320314947930e-05, 2.0006e+01, 6.5279e-01, + 1DIAGNOSTIC, 27, -9.498106392679e-01, 6.356859651041e-05, 2.0659e+01, 6.5221e-01, + 1DIAGNOSTIC, 28, -9.499700820228e-01, 5.543726055732e-05, 2.1321e+01, 6.6286e-01, + 1DIAGNOSTIC, 29, -9.501173926020e-01, 4.853836288164e-05, 2.1982e+01, 6.6053e-01, + 1DIAGNOSTIC, 30, -9.502506183049e-01, 4.254134862458e-05, 2.2644e+01, 6.6236e-01, + 1DIAGNOSTIC, 31, -9.503699367916e-01, 3.732781656245e-05, 2.3279e+01, 6.3499e-01, + 1DIAGNOSTIC, 32, -9.504742064859e-01, 3.276696760198e-05, 2.3954e+01, 6.7475e-01, + 1DIAGNOSTIC, 33, -9.505684696716e-01, 2.869436873326e-05, 2.4604e+01, 6.4993e-01, + 1DIAGNOSTIC, 34, -9.506597239919e-01, 2.514676113632e-05, 2.5235e+01, 6.3098e-01, + 1DIAGNOSTIC, 35, -9.507405075417e-01, 2.209526069420e-05, 2.5910e+01, 6.7541e-01, + 1DIAGNOSTIC, 36, -9.508155549203e-01, 1.950354651544e-05, 2.6558e+01, 6.4757e-01, + 1DIAGNOSTIC, 37, -9.508872037914e-01, 1.732410586491e-05, 2.7196e+01, 6.3846e-01, + 1DIAGNOSTIC, 38, -9.509538420979e-01, 1.546216999801e-05, 2.7839e+01, 6.4264e-01, + 1DIAGNOSTIC, 39, -9.510120335283e-01, 1.386893209133e-05, 2.8508e+01, 6.6856e-01, + 1DIAGNOSTIC, 40, -9.510681236187e-01, 1.251906956467e-05, 2.9167e+01, 6.5958e-01, + 1DIAGNOSTIC, 41, -9.511192843985e-01, 1.135397642516e-05, 2.9835e+01, 6.6821e-01, + 1DIAGNOSTIC, 42, -9.511688920998e-01, 1.032441784854e-05, 3.0510e+01, 6.7480e-01, + 1DIAGNOSTIC, 43, -9.512169331090e-01, 9.411876788885e-06, 3.1175e+01, 6.6505e-01, + 1DIAGNOSTIC, 44, -9.512607741438e-01, 8.625144774236e-06, 3.1833e+01, 6.5817e-01, + 1DIAGNOSTIC, 45, -9.513010992793e-01, 7.918304234363e-06, 3.2497e+01, 6.6385e-01, + 1DIAGNOSTIC, 46, -9.513404914153e-01, 7.291818537473e-06, 3.3172e+01, 6.7435e-01, + 1DIAGNOSTIC, 47, -9.513727830170e-01, 6.716583804970e-06, 3.3831e+01, 6.5894e-01, + 1DIAGNOSTIC, 48, -9.514071838495e-01, 6.213339918799e-06, 3.4484e+01, 6.5319e-01, + 1DIAGNOSTIC, 49, -9.514356018948e-01, 5.723274066456e-06, 3.5118e+01, 6.3408e-01, + 1DIAGNOSTIC, 50, -9.514649490820e-01, 5.274830020371e-06, 3.5792e+01, 6.7406e-01, + 1DIAGNOSTIC, 51, -9.514934197542e-01, 4.862989812126e-06, 3.6446e+01, 6.5361e-01, + 1DIAGNOSTIC, 52, -9.515275474120e-01, 4.538815523515e-06, 3.7115e+01, 6.6987e-01, + 1DIAGNOSTIC, 53, -9.515525855701e-01, 4.258535137518e-06, 3.7789e+01, 6.7335e-01, + 1DIAGNOSTIC, 54, -9.515761906915e-01, 4.009093670990e-06, 3.8464e+01, 6.7507e-01, + 1DIAGNOSTIC, 55, -9.515997510851e-01, 3.785742113287e-06, 3.9129e+01, 6.6480e-01, + 1DIAGNOSTIC, 56, -9.516173816302e-01, 3.564453697976e-06, 3.9792e+01, 6.6319e-01, + 1DIAGNOSTIC, 57, -9.516380661358e-01, 3.338373678309e-06, 4.0456e+01, 6.6403e-01, + 1DIAGNOSTIC, 58, -9.516576512956e-01, 3.129426131777e-06, 4.1127e+01, 6.7096e-01, + 1DIAGNOSTIC, 59, -9.516777178536e-01, 2.923697069925e-06, 4.1793e+01, 6.6659e-01, + 1DIAGNOSTIC, 60, -9.516941392945e-01, 2.722075255195e-06, 4.2462e+01, 6.6839e-01, + 1DIAGNOSTIC, 61, -9.517020551775e-01, 2.492307433714e-06, 4.3130e+01, 6.6790e-01, + 1DIAGNOSTIC, 62, -9.517162248585e-01, 2.313280856380e-06, 4.3802e+01, 6.7188e-01, + 1DIAGNOSTIC, 63, -9.517369864396e-01, 2.182143269240e-06, 4.4454e+01, 6.5235e-01, + 1DIAGNOSTIC, 64, -9.517574594482e-01, 2.096407235707e-06, 4.5106e+01, 6.5204e-01, + 1DIAGNOSTIC, 65, -9.517764772544e-01, 2.054170303106e-06, 4.5742e+01, 6.3590e-01, + 1DIAGNOSTIC, 66, -9.517824285615e-01, 1.968868804412e-06, 4.6407e+01, 6.6495e-01, + 1DIAGNOSTIC, 67, -9.518011740181e-01, 1.919655729668e-06, 4.7078e+01, 6.7142e-01, + 1DIAGNOSTIC, 68, -9.518208341976e-01, 1.902144130053e-06, 4.7734e+01, 6.5623e-01, + 1DIAGNOSTIC, 69, -9.518373452727e-01, 1.902324085864e-06, 4.8385e+01, 6.5083e-01, + 1DIAGNOSTIC, 70, -9.518528468281e-01, 1.900275332872e-06, 4.9059e+01, 6.7366e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.057371790515e-01, 1.797693134862e+308, 5.4711e+01, 5.6515e+00, + 1DIAGNOSTIC, 2, -9.084914092021e-01, 1.797693134862e+308, 6.0038e+01, 5.3272e+00, + 1DIAGNOSTIC, 3, -9.112987559900e-01, 1.797693134862e+308, 6.5397e+01, 5.3597e+00, + 1DIAGNOSTIC, 4, -9.141159213644e-01, 1.797693134862e+308, 7.0749e+01, 5.3514e+00, + 1DIAGNOSTIC, 5, -9.164291521365e-01, 1.797693134862e+308, 7.6118e+01, 5.3687e+00, + 1DIAGNOSTIC, 6, -9.186753807641e-01, 1.797693134862e+308, 8.1425e+01, 5.3070e+00, + 1DIAGNOSTIC, 7, -9.206513842205e-01, 1.797693134862e+308, 8.6769e+01, 5.3447e+00, + 1DIAGNOSTIC, 8, -9.223444605599e-01, 1.797693134862e+308, 9.2092e+01, 5.3226e+00, + 1DIAGNOSTIC, 9, -9.238184064940e-01, 1.797693134862e+308, 9.7433e+01, 5.3408e+00, + 1DIAGNOSTIC, 10, -9.251162690533e-01, 1.365725765866e-03, 1.0279e+02, 5.3540e+00, + 1DIAGNOSTIC, 11, -9.262740481150e-01, 1.122337133780e-03, 1.0817e+02, 5.3804e+00, + 1DIAGNOSTIC, 12, -9.270768011401e-01, 9.099495736667e-04, 1.1354e+02, 5.3742e+00, + 1DIAGNOSTIC, 13, -9.278054441725e-01, 7.316512148588e-04, 1.1893e+02, 5.3893e+00, + 1DIAGNOSTIC, 14, -9.284839236126e-01, 5.892103638721e-04, 1.2431e+02, 5.3753e+00, + 1DIAGNOSTIC, 15, -9.291136235162e-01, 4.720769641667e-04, 1.2971e+02, 5.4070e+00, + 1DIAGNOSTIC, 16, -9.296914423270e-01, 3.803786337423e-04, 1.3509e+02, 5.3754e+00, + 1DIAGNOSTIC, 17, -9.302250289899e-01, 3.097612931325e-04, 1.4046e+02, 5.3756e+00, + 1DIAGNOSTIC, 18, -9.307200868158e-01, 2.556942680129e-04, 1.4581e+02, 5.3497e+00, + 1DIAGNOSTIC, 19, -9.311803003780e-01, 2.148038799890e-04, 1.5119e+02, 5.3754e+00, + 1DIAGNOSTIC, 20, -9.316052783250e-01, 1.843749934930e-04, 1.5653e+02, 5.3454e+00, + 1DIAGNOSTIC, 21, -9.320096439942e-01, 1.625121659253e-04, 1.6190e+02, 5.3645e+00, + 1DIAGNOSTIC, 22, -9.323748474338e-01, 1.437590951946e-04, 1.6724e+02, 5.3445e+00, + 1DIAGNOSTIC, 23, -9.327084243864e-01, 1.273672797142e-04, 1.7263e+02, 5.3913e+00, + 1DIAGNOSTIC, 24, -9.330115850661e-01, 1.129656513338e-04, 1.7798e+02, 5.3420e+00, + 1DIAGNOSTIC, 25, -9.332845768052e-01, 1.002048092373e-04, 1.8335e+02, 5.3698e+00, + 1DIAGNOSTIC, 26, -9.335329096803e-01, 8.877111391410e-05, 1.8873e+02, 5.3879e+00, + 1DIAGNOSTIC, 27, -9.337594594035e-01, 7.848517524463e-05, 1.9413e+02, 5.3945e+00, + 1DIAGNOSTIC, 28, -9.339693299175e-01, 6.928467070091e-05, 1.9946e+02, 5.3336e+00, + 1DIAGNOSTIC, 29, -9.341596129717e-01, 6.108954908873e-05, 2.0483e+02, 5.3630e+00, + 1DIAGNOSTIC, 30, -9.343370322732e-01, 5.385694206783e-05, 2.1021e+02, 5.3867e+00, + 1DIAGNOSTIC, 31, -9.344978649542e-01, 4.762227381698e-05, 2.1563e+02, 5.4146e+00, + 1DIAGNOSTIC, 32, -9.346510529442e-01, 4.227298555328e-05, 2.2102e+02, 5.3936e+00, + 1DIAGNOSTIC, 33, -9.347910800073e-01, 3.768024952102e-05, 2.2643e+02, 5.4104e+00, + 1DIAGNOSTIC, 34, -9.349227474588e-01, 3.374670386447e-05, 2.3178e+02, 5.3535e+00, + 1DIAGNOSTIC, 35, -9.350462646455e-01, 3.035177910364e-05, 2.3717e+02, 5.3886e+00, + 1DIAGNOSTIC, 36, -9.351593208018e-01, 2.738506041959e-05, 2.4251e+02, 5.3366e+00, + 1DIAGNOSTIC, 37, -9.352617712451e-01, 2.474774772438e-05, 2.4790e+02, 5.3946e+00, + 1DIAGNOSTIC, 38, -9.353591542167e-01, 2.242227578646e-05, 2.5326e+02, 5.3540e+00, + 1DIAGNOSTIC, 39, -9.354503096596e-01, 2.034180785056e-05, 2.5863e+02, 5.3674e+00, + 1DIAGNOSTIC, 40, -9.355345335442e-01, 1.848198806813e-05, 2.6400e+02, 5.3753e+00, + 1DIAGNOSTIC, 41, -9.356125752731e-01, 1.678677993815e-05, 2.6940e+02, 5.3945e+00, + 1DIAGNOSTIC, 42, -9.356852389139e-01, 1.527069451548e-05, 2.7476e+02, 5.3684e+00, + 1DIAGNOSTIC, 43, -9.357520511768e-01, 1.389288300931e-05, 2.8013e+02, 5.3655e+00, + 1DIAGNOSTIC, 44, -9.358142319047e-01, 1.265166191428e-05, 2.8552e+02, 5.3935e+00, + 1DIAGNOSTIC, 45, -9.358716902997e-01, 1.154022624937e-05, 2.9091e+02, 5.3853e+00, + 1DIAGNOSTIC, 46, -9.359243151969e-01, 1.052948493753e-05, 2.9628e+02, 5.3691e+00, + 1DIAGNOSTIC, 47, -9.359735818212e-01, 9.595358401400e-06, 3.0170e+02, 5.4203e+00, + 1DIAGNOSTIC, 48, -9.360171484269e-01, 8.732903139502e-06, 3.0708e+02, 5.3801e+00, + 1DIAGNOSTIC, 49, -9.360600216720e-01, 7.959124023387e-06, 3.1247e+02, 5.3910e+00, + 1DIAGNOSTIC, 50, -9.361008539962e-01, 7.270977864980e-06, 3.1782e+02, 5.3486e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.011712970934e-01, 1.797693134862e+308, 3.6178e+02, 4.3964e+01, + 1DIAGNOSTIC, 2, -9.025124679594e-01, 1.797693134862e+308, 4.0528e+02, 4.3500e+01, + 1DIAGNOSTIC, 3, -9.038251011952e-01, 1.797693134862e+308, 4.4863e+02, 4.3345e+01, + 1DIAGNOSTIC, 4, -9.050328267560e-01, 1.797693134862e+308, 4.9201e+02, 4.3389e+01, + 1DIAGNOSTIC, 5, -9.061958500698e-01, 1.797693134862e+308, 5.3526e+02, 4.3241e+01, + 1DIAGNOSTIC, 6, -9.072896849025e-01, 1.797693134862e+308, 5.7844e+02, 4.3188e+01, + 1DIAGNOSTIC, 7, -9.083896620888e-01, 1.797693134862e+308, 6.2216e+02, 4.3720e+01, + 1DIAGNOSTIC, 8, -9.095083905158e-01, 1.797693134862e+308, 6.6537e+02, 4.3208e+01, + 1DIAGNOSTIC, 9, -9.106848617085e-01, 1.797693134862e+308, 7.0869e+02, 4.3318e+01, + 1DIAGNOSTIC, 10, -9.118461297996e-01, 7.414878959944e-04, 7.5221e+02, 4.3523e+01, + 1DIAGNOSTIC, 11, -9.128581025507e-01, 6.593380359388e-04, 7.9550e+02, 4.3289e+01, + 1DIAGNOSTIC, 12, -9.137572684054e-01, 5.898392192306e-04, 8.3878e+02, 4.3276e+01, + 1DIAGNOSTIC, 13, -9.145461112501e-01, 5.280610538536e-04, 8.8206e+02, 4.3282e+01, + 1DIAGNOSTIC, 14, -9.152419355560e-01, 4.693693363223e-04, 9.2520e+02, 4.3139e+01, + 1DIAGNOSTIC, 15, -9.158545118070e-01, 4.124286564186e-04, 9.6855e+02, 4.3355e+01, + 1DIAGNOSTIC, 16, -9.163914552105e-01, 3.564874194759e-04, 1.0117e+03, 4.3106e+01, + 1DIAGNOSTIC, 17, -9.168867412762e-01, 3.035253865723e-04, 1.0549e+03, 4.3228e+01, + 1DIAGNOSTIC, 18, -9.173400670698e-01, 2.555383377246e-04, 1.0982e+03, 4.3270e+01, + 1DIAGNOSTIC, 19, -9.177424693325e-01, 2.146993417447e-04, 1.1415e+03, 4.3316e+01, + 1DIAGNOSTIC, 20, -9.181113784018e-01, 1.817606151946e-04, 1.1848e+03, 4.3368e+01, + Elapsed time (stage 2): 1185 + + +Total elapsed time: 1238 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:24 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:24 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:27 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:31 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:34 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:35 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18553 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:35 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:38 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:38 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18629 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:38 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:41 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:41 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18692 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:41 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18700 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:42 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:48 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:50 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:50 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:51 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:52 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:54 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:54 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:55 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:56 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:58 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:58 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:18 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC007 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:19 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC007 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:19 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC007 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:19 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19317 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:21 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:21 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19346 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:23 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:23 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC007_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 67.200 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/logs/proc_func_18-03-2024-17745.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:29 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC007 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/QC/sub-PNC007_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC007* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 67.250 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC007_ses-02 +========================reprocessing without filter=================== +sub-PNC007_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC007 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC007 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC007 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC007 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:35 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:35 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:45:40 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:47:45 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:47:59 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.47 (mm) at sub-brick 23 +++ Max delta displ in automask = 0.15 (mm) at sub-brick 72 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:00:38 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:00:57 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:03:07 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:05:21 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:07:37 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = 0.203 -2.014 1.841 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.0 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = 0.306 -2.287 2.457 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 74.9 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:12:27 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:12:54 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x558b20ff26f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.143, 67.8677, -109.738] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558b20e69730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558b21009320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x558b20ff5fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [73.8093, 126.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558b20ffbe10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558b21806230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x558b218045c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.143, 67.8677, -109.738] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558b20ff83f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558b22330450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x558b21802da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [73.8093, 126.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558b20fff360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558b22b2a780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.334867689231e-01, 1.797693134862e+308, 4.2574e-02, 4.2573e-02, + 2DIAGNOSTIC, 2, -7.346560140786e-01, 1.797693134862e+308, 4.3804e-02, 1.2300e-03, + 2DIAGNOSTIC, 3, -7.376514528738e-01, 1.797693134862e+308, 4.5018e-02, 1.2140e-03, + 2DIAGNOSTIC, 4, -7.406336986227e-01, 1.797693134862e+308, 4.6414e-02, 1.3962e-03, + 2DIAGNOSTIC, 5, -7.416351598872e-01, 1.797693134862e+308, 4.8202e-02, 1.7872e-03, + 2DIAGNOSTIC, 6, -7.425341192261e-01, 1.797693134862e+308, 4.9522e-02, 1.3201e-03, + 2DIAGNOSTIC, 7, -7.511680001422e-01, 1.797693134862e+308, 5.0840e-02, 1.3180e-03, + 2DIAGNOSTIC, 8, -7.734001147271e-01, 1.797693134862e+308, 5.2143e-02, 1.3030e-03, + 2DIAGNOSTIC, 9, -7.879822185590e-01, 1.797693134862e+308, 5.3742e-02, 1.5998e-03, + 2DIAGNOSTIC, 10, -8.214233184280e-01, 6.190685901166e-03, 5.6453e-02, 2.7111e-03, + 2DIAGNOSTIC, 11, -8.215906003545e-01, 7.106832204806e-03, 5.8150e-02, 1.6961e-03, + 2DIAGNOSTIC, 12, -8.216802442176e-01, 7.276814681453e-03, 5.9640e-02, 1.4901e-03, + 2DIAGNOSTIC, 13, -8.225826422033e-01, 6.876225698839e-03, 6.1086e-02, 1.4460e-03, + 2DIAGNOSTIC, 14, -8.250750756155e-01, 6.047663912231e-03, 6.2560e-02, 1.4741e-03, + 2DIAGNOSTIC, 15, -8.293909370259e-01, 4.908392475393e-03, 6.4060e-02, 1.4999e-03, + 2DIAGNOSTIC, 16, -8.390939338925e-01, 3.711086641603e-03, 6.5757e-02, 1.6968e-03, + 2DIAGNOSTIC, 17, -8.552729184938e-01, 2.846126987096e-03, 6.7491e-02, 1.7340e-03, + 2DIAGNOSTIC, 18, -8.640840717664e-01, 2.435685589043e-03, 6.9001e-02, 1.5109e-03, + 2DIAGNOSTIC, 19, -8.737921695586e-01, 2.285998629987e-03, 7.0951e-02, 1.9491e-03, + 2DIAGNOSTIC, 20, -8.748361840979e-01, 2.553919986698e-03, 7.2633e-02, 1.6820e-03, + 2DIAGNOSTIC, 21, -8.754543213816e-01, 2.571147633165e-03, 7.4083e-02, 1.4501e-03, + 2DIAGNOSTIC, 22, -8.761867464879e-01, 2.358970866738e-03, 7.5999e-02, 1.9162e-03, + 2DIAGNOSTIC, 23, -8.763396273830e-01, 1.961532659954e-03, 7.8661e-02, 2.6619e-03, + 2DIAGNOSTIC, 24, -8.765917859937e-01, 1.457743301361e-03, 8.0120e-02, 1.4591e-03, + 2DIAGNOSTIC, 25, -8.769017935049e-01, 9.256526790580e-04, 8.1640e-02, 1.5199e-03, + 2DIAGNOSTIC, 26, -8.771225784064e-01, 4.805762911120e-04, 8.3100e-02, 1.4598e-03, + 2DIAGNOSTIC, 27, -8.777155627854e-01, 2.394782833691e-04, 8.4528e-02, 1.4281e-03, + 2DIAGNOSTIC, 28, -8.786619501011e-01, 1.115502747058e-04, 8.5967e-02, 1.4391e-03, + 2DIAGNOSTIC, 29, -8.798012365297e-01, 1.113128479795e-04, 8.7413e-02, 1.4460e-03, + 2DIAGNOSTIC, 30, -8.844221578924e-01, 1.653906070904e-04, 8.8938e-02, 1.5249e-03, + 2DIAGNOSTIC, 31, -9.088365735137e-01, 4.756843990453e-04, 9.1301e-02, 2.3630e-03, + 2DIAGNOSTIC, 32, -9.067533192209e-01, 6.987645339753e-04, 9.2973e-02, 1.6720e-03, + 2DIAGNOSTIC, 33, -9.099309024637e-01, 8.796639934936e-04, 9.4908e-02, 1.9350e-03, + 2DIAGNOSTIC, 34, -9.138743054571e-01, 1.010073507270e-03, 9.6645e-02, 1.7371e-03, + 2DIAGNOSTIC, 35, -9.162162120715e-01, 1.059764341851e-03, 9.8107e-02, 1.4620e-03, + 2DIAGNOSTIC, 36, -9.201896709678e-01, 1.041761916997e-03, 9.9798e-02, 1.6911e-03, + 2DIAGNOSTIC, 37, -9.232332535436e-01, 9.588351547997e-04, 1.0265e-01, 2.8520e-03, + 2DIAGNOSTIC, 38, -9.226454369598e-01, 7.960531365623e-04, 1.0412e-01, 1.4729e-03, + 2DIAGNOSTIC, 39, -9.244831618908e-01, 5.937269176878e-04, 1.0559e-01, 1.4660e-03, + 2DIAGNOSTIC, 40, -9.266216822477e-01, 3.962836150955e-04, 1.0709e-01, 1.5001e-03, + 2DIAGNOSTIC, 41, -9.288501698582e-01, 3.890254227764e-04, 1.0855e-01, 1.4639e-03, + 2DIAGNOSTIC, 42, -9.299903031762e-01, 3.370460484843e-04, 1.1001e-01, 1.4529e-03, + 2DIAGNOSTIC, 43, -9.318898365570e-01, 2.949152605832e-04, 1.1147e-01, 1.4620e-03, + 2DIAGNOSTIC, 44, -9.411849443400e-01, 3.265382663524e-04, 1.1363e-01, 2.1639e-03, + 2DIAGNOSTIC, 45, -9.428543257584e-01, 3.523709802573e-04, 1.1557e-01, 1.9350e-03, + 2DIAGNOSTIC, 46, -9.453901443119e-01, 3.899996555016e-04, 1.1775e-01, 2.1801e-03, + 2DIAGNOSTIC, 47, -9.464361587125e-01, 4.183375681102e-04, 1.1953e-01, 1.7869e-03, + 2DIAGNOSTIC, 48, -9.503150348776e-01, 4.277540800827e-04, 1.2106e-01, 1.5268e-03, + 2DIAGNOSTIC, 49, -9.529574318525e-01, 4.242815523152e-04, 1.2258e-01, 1.5211e-03, + 2DIAGNOSTIC, 50, -9.554122100893e-01, 4.098402548017e-04, 1.2406e-01, 1.4739e-03, + 2DIAGNOSTIC, 51, -9.600665042619e-01, 4.016818659328e-04, 1.2556e-01, 1.5001e-03, + 2DIAGNOSTIC, 52, -9.849991339069e-01, 5.186936591392e-04, 1.2722e-01, 1.6601e-03, + 2DIAGNOSTIC, 53, -1.017034187379e+00, 7.833608754536e-04, 1.3034e-01, 3.1271e-03, + 2DIAGNOSTIC, 54, -1.023034355304e+00, 1.049767232049e-03, 1.3200e-01, 1.6592e-03, + 2DIAGNOSTIC, 55, -1.026543411837e+00, 1.238050868277e-03, 1.3343e-01, 1.4238e-03, + 2DIAGNOSTIC, 56, -1.032149425020e+00, 1.348812239340e-03, 1.3487e-01, 1.4431e-03, + 2DIAGNOSTIC, 57, -1.036059384657e+00, 1.350202595450e-03, 1.3631e-01, 1.4360e-03, + 2DIAGNOSTIC, 58, -1.039678047867e+00, 1.260096137196e-03, 1.3799e-01, 1.6890e-03, + 2DIAGNOSTIC, 59, -1.041873759476e+00, 1.079973766568e-03, 1.3969e-01, 1.6959e-03, + 2DIAGNOSTIC, 60, -1.042921065791e+00, 8.252463083310e-04, 1.4135e-01, 1.6632e-03, + 2DIAGNOSTIC, 61, -1.043902796101e+00, 5.288945312340e-04, 1.4327e-01, 1.9200e-03, + 2DIAGNOSTIC, 62, -1.044157077232e+00, 3.171177736919e-04, 1.4471e-01, 1.4319e-03, + 2DIAGNOSTIC, 63, -1.044842515472e+00, 2.462374036627e-04, 1.4614e-01, 1.4341e-03, + 2DIAGNOSTIC, 64, -1.048359582765e+00, 2.010320034278e-04, 1.4826e-01, 2.1229e-03, + 2DIAGNOSTIC, 65, -1.049604242393e+00, 1.603193551806e-04, 1.4974e-01, 1.4760e-03, + 2DIAGNOSTIC, 66, -1.050337665132e+00, 1.356107558938e-04, 1.5116e-01, 1.4222e-03, + 2DIAGNOSTIC, 67, -1.051051303279e+00, 1.202553900661e-04, 1.5284e-01, 1.6799e-03, + 2DIAGNOSTIC, 68, -1.051347713931e+00, 1.116334969531e-04, 1.5450e-01, 1.6592e-03, + 2DIAGNOSTIC, 69, -1.050078378273e+00, 9.648548407191e-05, 1.5666e-01, 2.1598e-03, + 2DIAGNOSTIC, 70, -1.050154543711e+00, 7.758932977187e-05, 1.5837e-01, 1.7090e-03, + 2DIAGNOSTIC, 71, -1.050453194913e+00, 5.758815224914e-05, 1.6002e-01, 1.6499e-03, + 2DIAGNOSTIC, 72, -1.050687113626e+00, 3.482004772665e-05, 1.6167e-01, 1.6510e-03, + 2DIAGNOSTIC, 73, -1.050776470328e+00, 1.240354353288e-05, 1.6332e-01, 1.6501e-03, + 2DIAGNOSTIC, 74, -1.052737164079e+00, 1.237851290608e-05, 1.6547e-01, 2.1470e-03, + 2DIAGNOSTIC, 75, -1.053028256815e+00, 1.727462409446e-05, 1.6692e-01, 1.4539e-03, + 2DIAGNOSTIC, 76, -1.053089131725e+00, 2.350507816511e-05, 1.6834e-01, 1.4198e-03, + 2DIAGNOSTIC, 77, -1.053166027371e+00, 3.050106289148e-05, 1.7386e-01, 5.5211e-03, + 2DIAGNOSTIC, 78, -1.053166027330e+00, 3.570118897515e-05, 1.7928e-01, 5.4190e-03, + 2DIAGNOSTIC, 79, -1.053166027330e+00, 3.234267544157e-05, 1.8142e-01, 2.1439e-03, + 2DIAGNOSTIC, 80, -1.053166027330e+00, 2.623502506695e-05, 1.8306e-01, 1.6351e-03, + 2DIAGNOSTIC, 81, -1.053166027330e+00, 1.902253700071e-05, 1.8465e-01, 1.5950e-03, + 2DIAGNOSTIC, 82, -1.053166027330e+00, 1.117273409671e-05, 1.8629e-01, 1.6332e-03, + 2DIAGNOSTIC, 83, -1.053166027330e+00, 2.636210000366e-06, 1.8818e-01, 1.8969e-03, + 2DIAGNOSTIC, 84, -1.053166027330e+00, 1.164397498060e-06, 1.8985e-01, 1.6620e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.590456225885e-01, 1.797693134862e+308, 2.3764e-01, 4.7796e-02, + 2DIAGNOSTIC, 2, -6.593500480694e-01, 1.797693134862e+308, 2.4034e-01, 2.6989e-03, + 2DIAGNOSTIC, 3, -6.604438353160e-01, 1.797693134862e+308, 2.4304e-01, 2.6970e-03, + 2DIAGNOSTIC, 4, -6.612884393891e-01, 1.797693134862e+308, 2.4582e-01, 2.7790e-03, + 2DIAGNOSTIC, 5, -6.616219683225e-01, 1.797693134862e+308, 2.4828e-01, 2.4631e-03, + 2DIAGNOSTIC, 6, -6.616437922839e-01, 1.797693134862e+308, 2.5046e-01, 2.1820e-03, + 2DIAGNOSTIC, 7, -6.619534310536e-01, 1.797693134862e+308, 2.5266e-01, 2.1989e-03, + 2DIAGNOSTIC, 8, -6.658268852600e-01, 1.797693134862e+308, 2.5569e-01, 3.0260e-03, + 2DIAGNOSTIC, 9, -6.694081057350e-01, 1.797693134862e+308, 2.5901e-01, 3.3252e-03, + 2DIAGNOSTIC, 10, -6.693410871728e-01, 9.966771174068e-04, 2.6133e-01, 2.3150e-03, + 2DIAGNOSTIC, 11, -6.698213787118e-01, 1.013601273082e-03, 2.6366e-01, 2.3351e-03, + 2DIAGNOSTIC, 12, -6.702975941617e-01, 9.652015782617e-04, 2.6598e-01, 2.3191e-03, + 2DIAGNOSTIC, 13, -6.712783053152e-01, 9.020217182075e-04, 2.6848e-01, 2.4941e-03, + 2DIAGNOSTIC, 14, -6.730620075190e-01, 8.435002207820e-04, 2.7125e-01, 2.7699e-03, + 2DIAGNOSTIC, 15, -6.743794685352e-01, 7.635973543743e-04, 2.7400e-01, 2.7540e-03, + 2DIAGNOSTIC, 16, -6.743928023409e-01, 6.272687788787e-04, 2.7645e-01, 2.4550e-03, + 2DIAGNOSTIC, 17, -6.743313014165e-01, 4.549076610243e-04, 2.7892e-01, 2.4610e-03, + 2DIAGNOSTIC, 18, -6.743693404085e-01, 3.503197171984e-04, 2.8144e-01, 2.5210e-03, + 2DIAGNOSTIC, 19, -6.746408524082e-01, 3.103205512561e-04, 2.8389e-01, 2.4500e-03, + 2DIAGNOSTIC, 20, -6.746899376066e-01, 2.446902763954e-04, 2.9137e-01, 7.4811e-03, + 2DIAGNOSTIC, 21, -6.746899365169e-01, 1.729626720817e-04, 2.9352e-01, 2.1501e-03, + 2DIAGNOSTIC, 22, -6.746899392675e-01, 1.014159257454e-04, 2.9569e-01, 2.1720e-03, + 2DIAGNOSTIC, 23, -6.746899439180e-01, 4.425313940435e-05, 2.9784e-01, 2.1510e-03, + 2DIAGNOSTIC, 24, -6.746899517802e-01, 1.867281664636e-05, 2.9996e-01, 2.1169e-03, + 2DIAGNOSTIC, 25, -6.746899650701e-01, 1.586293609649e-05, 3.0206e-01, 2.1021e-03, + 2DIAGNOSTIC, 26, -6.746899875292e-01, 1.222353574082e-05, 3.0418e-01, 2.1188e-03, + 2DIAGNOSTIC, 27, -6.746900254670e-01, 6.901667830801e-06, 3.0643e-01, 2.2471e-03, + 2DIAGNOSTIC, 28, -6.746900895051e-01, 1.891992049377e-06, 3.0868e-01, 2.2500e-03, + 2DIAGNOSTIC, 29, -6.746901974669e-01, 1.111349005031e-06, 3.1089e-01, 2.2192e-03, + 2DIAGNOSTIC, 30, -6.746903791033e-01, 1.078750680839e-06, 3.1308e-01, 2.1820e-03, + 2DIAGNOSTIC, 31, -6.746906836282e-01, 1.051291498161e-06, 3.1525e-01, 2.1780e-03, + 2DIAGNOSTIC, 32, -6.746911912116e-01, 1.030481102976e-06, 3.1747e-01, 2.2130e-03, + 2DIAGNOSTIC, 33, -6.746920284916e-01, 1.018761115912e-06, 3.1964e-01, 2.1770e-03, + 2DIAGNOSTIC, 34, -6.746933913075e-01, 1.019970842675e-06, 3.2186e-01, 2.2180e-03, + 2DIAGNOSTIC, 35, -6.746955626133e-01, 1.039756359511e-06, 3.2402e-01, 2.1558e-03, + 2DIAGNOSTIC, 36, -6.746992740391e-01, 1.089956762918e-06, 3.2623e-01, 2.2109e-03, + 2DIAGNOSTIC, 37, -6.747054655948e-01, 1.188773530714e-06, 3.2849e-01, 2.2640e-03, + 2DIAGNOSTIC, 38, -6.747140237098e-01, 1.346267662052e-06, 3.3081e-01, 2.3131e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.159463201788e-01, 1.797693134862e+308, 3.9742e-01, 6.6613e-02, + 2DIAGNOSTIC, 2, -5.161542878614e-01, 1.797693134862e+308, 4.0924e-01, 1.1818e-02, + 2DIAGNOSTIC, 3, -5.165196873432e-01, 1.797693134862e+308, 4.2022e-01, 1.0983e-02, + 2DIAGNOSTIC, 4, -5.171606611132e-01, 1.797693134862e+308, 4.3077e-01, 1.0546e-02, + 2DIAGNOSTIC, 5, -5.182606155665e-01, 1.797693134862e+308, 4.4120e-01, 1.0433e-02, + 2DIAGNOSTIC, 6, -5.193633609338e-01, 1.797693134862e+308, 4.5314e-01, 1.1943e-02, + 2DIAGNOSTIC, 7, -5.198557599974e-01, 1.797693134862e+308, 4.6651e-01, 1.3364e-02, + 2DIAGNOSTIC, 8, -5.202432020086e-01, 1.797693134862e+308, 4.7746e-01, 1.0952e-02, + 2DIAGNOSTIC, 9, -5.205949544517e-01, 1.797693134862e+308, 4.8826e-01, 1.0801e-02, + 2DIAGNOSTIC, 10, -5.211495416612e-01, 7.232557397653e-04, 5.0043e-01, 1.2170e-02, + 2DIAGNOSTIC, 11, -5.218170046557e-01, 6.565421137651e-04, 5.1250e-01, 1.2071e-02, + 2DIAGNOSTIC, 12, -5.219259595545e-01, 5.566310338562e-04, 5.2376e-01, 1.1264e-02, + 2DIAGNOSTIC, 13, -5.220534091125e-01, 4.436321280060e-04, 5.3900e-01, 1.5233e-02, + 2DIAGNOSTIC, 14, -5.224138341916e-01, 3.454772140234e-04, 5.5345e-01, 1.4453e-02, + 2DIAGNOSTIC, 15, -5.224320212641e-01, 2.684781159039e-04, 5.6493e-01, 1.1478e-02, + 2DIAGNOSTIC, 16, -5.224665425063e-01, 2.151949315690e-04, 5.8124e-01, 1.6308e-02, + 2DIAGNOSTIC, 17, -5.225013298542e-01, 1.656138852882e-04, 5.9190e-01, 1.0666e-02, + 2DIAGNOSTIC, 18, -5.226244138602e-01, 1.220386073966e-04, 6.0255e-01, 1.0649e-02, + 2DIAGNOSTIC, 19, -5.228109177354e-01, 8.696270951990e-05, 6.1312e-01, 1.0570e-02, + 2DIAGNOSTIC, 20, -5.230109461476e-01, 6.752133060553e-05, 6.2449e-01, 1.1371e-02, + 2DIAGNOSTIC, 21, -5.231274210974e-01, 6.423280404389e-05, 6.3775e-01, 1.3260e-02, + 2DIAGNOSTIC, 22, -5.231969551770e-01, 5.986624533471e-05, 6.5146e-01, 1.3708e-02, + 2DIAGNOSTIC, 23, -5.232130642506e-01, 5.359065189772e-05, 6.6465e-01, 1.3185e-02, + 2DIAGNOSTIC, 24, -5.232954487983e-01, 5.297700196778e-05, 6.7955e-01, 1.4905e-02, + 2DIAGNOSTIC, 25, -5.233657930024e-01, 4.940569081369e-05, 6.9445e-01, 1.4900e-02, + 2DIAGNOSTIC, 26, -5.233684170563e-01, 4.235934172009e-05, 7.0604e-01, 1.1591e-02, + 2DIAGNOSTIC, 27, -5.233777843960e-01, 3.290426407814e-05, 7.1857e-01, 1.2527e-02, + 2DIAGNOSTIC, 28, -5.233876059231e-01, 2.370477365241e-05, 7.3181e-01, 1.3238e-02, + 2DIAGNOSTIC, 29, -5.233639590158e-01, 1.597825406923e-05, 7.4313e-01, 1.1322e-02, + 2DIAGNOSTIC, 30, -5.233726190124e-01, 1.110311103462e-05, 7.5485e-01, 1.1723e-02, + 2DIAGNOSTIC, 31, -5.233769239247e-01, 7.696293511467e-06, 7.6648e-01, 1.1631e-02, + 2DIAGNOSTIC, 32, -5.234005548457e-01, 5.476286885867e-06, 7.7956e-01, 1.3078e-02, + 2DIAGNOSTIC, 33, -5.233951795855e-01, 3.109649458009e-06, 7.9419e-01, 1.4627e-02, + 2DIAGNOSTIC, 34, -5.234249303548e-01, 2.460261431369e-06, 8.0472e-01, 1.0535e-02, + 2DIAGNOSTIC, 35, -5.234078916867e-01, 2.526949921772e-06, 8.1979e-01, 1.5070e-02, + 2DIAGNOSTIC, 36, -5.234364499556e-01, 2.908572106344e-06, 8.3225e-01, 1.2457e-02, + 2DIAGNOSTIC, 37, -5.234267394040e-01, 3.052048014780e-06, 8.4717e-01, 1.4921e-02, + 2DIAGNOSTIC, 38, -5.234267545579e-01, 3.135980535515e-06, 8.6061e-01, 1.3435e-02, + 2DIAGNOSTIC, 39, -5.234267564084e-01, 2.668250360251e-06, 8.7311e-01, 1.2505e-02, + 2DIAGNOSTIC, 40, -5.234267567412e-01, 2.165211847181e-06, 8.8960e-01, 1.6487e-02, + 2DIAGNOSTIC, 41, -5.234267567982e-01, 1.604976727056e-06, 9.2384e-01, 3.4241e-02, + 2DIAGNOSTIC, 42, -5.234267567982e-01, 1.302661457786e-06, 9.3551e-01, 1.1670e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.342444235002e-01, 1.797693134862e+308, 1.1513e+00, 2.1582e-01, + Elapsed time (stage 0): 1.1818e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.956294711839e-01, 1.797693134862e+308, 4.3142e-02, 4.3142e-02, + 2DIAGNOSTIC, 2, -9.976278823828e-01, 1.797693134862e+308, 4.4593e-02, 1.4510e-03, + 2DIAGNOSTIC, 3, -9.987339266291e-01, 1.797693134862e+308, 4.5797e-02, 1.2040e-03, + 2DIAGNOSTIC, 4, -1.001552973880e+00, 1.797693134862e+308, 4.7216e-02, 1.4191e-03, + 2DIAGNOSTIC, 5, -1.004981737954e+00, 1.797693134862e+308, 4.8497e-02, 1.2810e-03, + 2DIAGNOSTIC, 6, -1.008490788327e+00, 1.797693134862e+308, 4.9996e-02, 1.4989e-03, + 2DIAGNOSTIC, 7, -1.011718127271e+00, 1.797693134862e+308, 5.1258e-02, 1.2622e-03, + 2DIAGNOSTIC, 8, -1.011691021356e+00, 1.797693134862e+308, 5.2521e-02, 1.2631e-03, + 2DIAGNOSTIC, 9, -1.016566128364e+00, 1.797693134862e+308, 5.4013e-02, 1.4920e-03, + 2DIAGNOSTIC, 10, -1.021176464320e+00, 1.598479362954e-03, 5.5487e-02, 1.4739e-03, + 2DIAGNOSTIC, 11, -1.036028811626e+00, 1.851167529163e-03, 5.7668e-02, 2.1811e-03, + 2DIAGNOSTIC, 12, -1.039664690008e+00, 2.019663018075e-03, 5.9363e-02, 1.6949e-03, + 2DIAGNOSTIC, 13, -1.042025665717e+00, 2.057192529080e-03, 6.1284e-02, 1.9209e-03, + 2DIAGNOSTIC, 14, -1.042643948292e+00, 1.973847281481e-03, 6.2750e-02, 1.4658e-03, + 2DIAGNOSTIC, 15, -1.042613287445e+00, 1.782766244028e-03, 6.4239e-02, 1.4889e-03, + 2DIAGNOSTIC, 16, -1.042818290994e+00, 1.513434499600e-03, 6.5915e-02, 1.6761e-03, + 2DIAGNOSTIC, 17, -1.042781209579e+00, 1.189957689564e-03, 6.7599e-02, 1.6840e-03, + 2DIAGNOSTIC, 18, -1.043797316215e+00, 8.103804429619e-04, 6.9083e-02, 1.4842e-03, + 2DIAGNOSTIC, 19, -1.043795295939e+00, 4.688272350295e-04, 7.0786e-02, 1.7030e-03, + 2DIAGNOSTIC, 20, -1.045576055731e+00, 2.027101418000e-04, 7.2510e-02, 1.7240e-03, + 2DIAGNOSTIC, 21, -1.044832004933e+00, 1.285521230908e-04, 7.4040e-02, 1.5299e-03, + 2DIAGNOSTIC, 22, -1.046856125048e+00, 1.203620431510e-04, 7.5523e-02, 1.4830e-03, + 2DIAGNOSTIC, 23, -1.072976554433e+00, 4.430269930313e-04, 7.7037e-02, 1.5142e-03, + 2DIAGNOSTIC, 24, -1.088386047200e+00, 8.715022995068e-04, 7.9446e-02, 2.4090e-03, + 2DIAGNOSTIC, 25, -1.091416995596e+00, 1.214001165006e-03, 8.1619e-02, 2.1729e-03, + 2DIAGNOSTIC, 26, -1.096194990763e+00, 1.472917430038e-03, 8.3325e-02, 1.7061e-03, + 2DIAGNOSTIC, 27, -1.106904133377e+00, 1.681051533622e-03, 8.5046e-02, 1.7209e-03, + 2DIAGNOSTIC, 28, -1.110658173707e+00, 1.754807706509e-03, 8.7623e-02, 2.5771e-03, + 2DIAGNOSTIC, 29, -1.110065492993e+00, 1.649573039047e-03, 8.9808e-02, 2.1842e-03, + 2DIAGNOSTIC, 30, -1.113024158033e+00, 1.444324934296e-03, 9.1984e-02, 2.1760e-03, + 2DIAGNOSTIC, 31, -1.117315627304e+00, 1.150716962506e-03, 9.4395e-02, 2.4118e-03, + 2DIAGNOSTIC, 32, -1.120243515039e+00, 8.027659795308e-04, 9.6314e-02, 1.9190e-03, + 2DIAGNOSTIC, 33, -1.132280515876e+00, 7.100128263585e-04, 9.8744e-02, 2.4300e-03, + 2DIAGNOSTIC, 34, -1.137969506801e+00, 7.221299880991e-04, 1.0056e-01, 1.8120e-03, + 2DIAGNOSTIC, 35, -1.138606295551e+00, 6.934311292150e-04, 1.0206e-01, 1.5020e-03, + 2DIAGNOSTIC, 36, -1.140455641245e+00, 6.491751025591e-04, 1.0381e-01, 1.7471e-03, + 2DIAGNOSTIC, 37, -1.143971134203e+00, 6.477965037053e-04, 1.0548e-01, 1.6780e-03, + 2DIAGNOSTIC, 38, -1.145316715432e+00, 6.195556680284e-04, 1.0715e-01, 1.6708e-03, + 2DIAGNOSTIC, 39, -1.144672878178e+00, 5.249325530548e-04, 1.0862e-01, 1.4699e-03, + 2DIAGNOSTIC, 40, -1.143954538599e+00, 4.014692999968e-04, 1.1008e-01, 1.4570e-03, + 2DIAGNOSTIC, 41, -1.144820249526e+00, 2.805946021261e-04, 1.1178e-01, 1.6999e-03, + 2DIAGNOSTIC, 42, -1.144520058901e+00, 1.533769604379e-04, 1.1348e-01, 1.6940e-03, + 2DIAGNOSTIC, 43, -1.145062733517e+00, 9.441658216574e-05, 1.1532e-01, 1.8411e-03, + 2DIAGNOSTIC, 44, -1.145214284394e+00, 6.484515268087e-05, 1.1678e-01, 1.4601e-03, + 2DIAGNOSTIC, 45, -1.145353381501e+00, 3.521876371393e-05, 1.1847e-01, 1.6971e-03, + 2DIAGNOSTIC, 46, -1.145409428631e+00, 1.401524956737e-05, 1.1994e-01, 1.4710e-03, + 2DIAGNOSTIC, 47, -1.146879341388e+00, 2.010413721707e-05, 1.2208e-01, 2.1360e-03, + 2DIAGNOSTIC, 48, -1.148457952997e+00, 3.995106033475e-05, 1.2356e-01, 1.4751e-03, + 2DIAGNOSTIC, 49, -1.148537900268e+00, 5.213217221596e-05, 1.2524e-01, 1.6890e-03, + 2DIAGNOSTIC, 50, -1.148607845195e+00, 5.556565463637e-05, 1.2671e-01, 1.4610e-03, + 2DIAGNOSTIC, 51, -1.148677848814e+00, 5.858495030578e-05, 1.2818e-01, 1.4720e-03, + 2DIAGNOSTIC, 52, -1.149084944448e+00, 5.625538579537e-05, 1.3031e-01, 2.1360e-03, + 2DIAGNOSTIC, 53, -1.149202791440e+00, 5.172793070162e-05, 1.3178e-01, 1.4639e-03, + 2DIAGNOSTIC, 54, -1.149322896709e+00, 4.386675042254e-05, 1.3348e-01, 1.7061e-03, + 2DIAGNOSTIC, 55, -1.149476129560e+00, 3.375611350234e-05, 1.3497e-01, 1.4849e-03, + 2DIAGNOSTIC, 56, -1.149070250742e+00, 1.909744737258e-05, 1.3736e-01, 2.3870e-03, + 2DIAGNOSTIC, 57, -1.149694185466e+00, 1.260318199886e-05, 1.3880e-01, 1.4422e-03, + 2DIAGNOSTIC, 58, -1.149985098554e+00, 1.346210408268e-05, 1.4027e-01, 1.4720e-03, + 2DIAGNOSTIC, 59, -1.150256322534e+00, 1.457677691558e-05, 1.4219e-01, 1.9190e-03, + 2DIAGNOSTIC, 60, -1.150411861943e+00, 1.532140774840e-05, 1.4365e-01, 1.4639e-03, + 2DIAGNOSTIC, 61, -1.150803496061e+00, 1.658022266954e-05, 1.4538e-01, 1.7290e-03, + 2DIAGNOSTIC, 62, -1.151135771195e+00, 1.928470313128e-05, 1.4757e-01, 2.1911e-03, + 2DIAGNOSTIC, 63, -1.151417166793e+00, 2.165979300504e-05, 1.4905e-01, 1.4770e-03, + 2DIAGNOSTIC, 64, -1.151616408500e+00, 2.320281432925e-05, 1.5049e-01, 1.4451e-03, + 2DIAGNOSTIC, 65, -1.152064447143e+00, 2.499178378999e-05, 1.5198e-01, 1.4830e-03, + 2DIAGNOSTIC, 66, -1.153641056886e+00, 2.885471687060e-05, 1.5392e-01, 1.9400e-03, + 2DIAGNOSTIC, 67, -1.153834198170e+00, 3.283389175763e-05, 1.5588e-01, 1.9670e-03, + 2DIAGNOSTIC, 68, -1.153913707259e+00, 3.503652772141e-05, 1.5760e-01, 1.7118e-03, + 2DIAGNOSTIC, 69, -1.154188816813e+00, 3.598014160896e-05, 1.5906e-01, 1.4641e-03, + 2DIAGNOSTIC, 70, -1.154551627154e+00, 3.530681901279e-05, 1.6077e-01, 1.7118e-03, + 2DIAGNOSTIC, 71, -1.154830593599e+00, 3.359155169974e-05, 1.6250e-01, 1.7288e-03, + 2DIAGNOSTIC, 72, -1.155894036921e+00, 3.369540939271e-05, 1.6419e-01, 1.6892e-03, + 2DIAGNOSTIC, 73, -1.156960603459e+00, 3.534358274853e-05, 1.6593e-01, 1.7378e-03, + 2DIAGNOSTIC, 74, -1.157122281149e+00, 3.479882616741e-05, 1.6765e-01, 1.7262e-03, + 2DIAGNOSTIC, 75, -1.157371019916e+00, 3.325889676432e-05, 1.6932e-01, 1.6649e-03, + 2DIAGNOSTIC, 76, -1.157676311753e+00, 3.495752511063e-05, 1.7105e-01, 1.7269e-03, + 2DIAGNOSTIC, 77, -1.159125888419e+00, 3.868679503841e-05, 1.7297e-01, 1.9271e-03, + 2DIAGNOSTIC, 78, -1.159250180466e+00, 3.911235546275e-05, 1.7448e-01, 1.5109e-03, + 2DIAGNOSTIC, 79, -1.159418319921e+00, 3.729972030191e-05, 1.7620e-01, 1.7171e-03, + 2DIAGNOSTIC, 80, -1.159453180039e+00, 3.336404997847e-05, 1.7812e-01, 1.9140e-03, + 2DIAGNOSTIC, 81, -1.159462125038e+00, 2.718387020144e-05, 1.7982e-01, 1.7080e-03, + 2DIAGNOSTIC, 82, -1.159480059929e+00, 2.179949598088e-05, 1.8128e-01, 1.4579e-03, + 2DIAGNOSTIC, 83, -1.159529188835e+00, 1.790590083639e-05, 1.8276e-01, 1.4811e-03, + 2DIAGNOSTIC, 84, -1.159572412372e+00, 1.308886666102e-05, 1.8423e-01, 1.4641e-03, + 2DIAGNOSTIC, 85, -1.159645240966e+00, 8.157070258991e-06, 1.8568e-01, 1.4510e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.479531022279e-01, 1.797693134862e+308, 2.3012e-01, 4.4442e-02, + 2DIAGNOSTIC, 2, -7.482637662574e-01, 1.797693134862e+308, 2.3323e-01, 3.1059e-03, + 2DIAGNOSTIC, 3, -7.495602490678e-01, 1.797693134862e+308, 2.3655e-01, 3.3221e-03, + 2DIAGNOSTIC, 4, -7.519221291687e-01, 1.797693134862e+308, 2.3948e-01, 2.9359e-03, + 2DIAGNOSTIC, 5, -7.559912325552e-01, 1.797693134862e+308, 2.4182e-01, 2.3410e-03, + 2DIAGNOSTIC, 6, -7.591681734755e-01, 1.797693134862e+308, 2.4415e-01, 2.3239e-03, + 2DIAGNOSTIC, 7, -7.627909610208e-01, 1.797693134862e+308, 2.4677e-01, 2.6181e-03, + 2DIAGNOSTIC, 8, -7.646003979302e-01, 1.797693134862e+308, 2.4973e-01, 2.9640e-03, + 2DIAGNOSTIC, 9, -7.650240181794e-01, 1.797693134862e+308, 2.5205e-01, 2.3241e-03, + 2DIAGNOSTIC, 10, -7.662781867178e-01, 1.847198000682e-03, 2.5466e-01, 2.6069e-03, + 2DIAGNOSTIC, 11, -7.671964640823e-01, 1.616881008359e-03, 2.5721e-01, 2.5458e-03, + 2DIAGNOSTIC, 12, -7.686228736215e-01, 1.333985151057e-03, 2.6009e-01, 2.8820e-03, + 2DIAGNOSTIC, 13, -7.698690189664e-01, 1.047444490332e-03, 2.6357e-01, 3.4800e-03, + 2DIAGNOSTIC, 14, -7.702587348643e-01, 7.798332718631e-04, 2.6646e-01, 2.8911e-03, + 2DIAGNOSTIC, 15, -7.705739312969e-01, 5.860989285125e-04, 2.6965e-01, 3.1862e-03, + 2DIAGNOSTIC, 16, -7.708681360966e-01, 4.423036844199e-04, 2.7252e-01, 2.8720e-03, + 2DIAGNOSTIC, 17, -7.712090877831e-01, 3.607790303625e-04, 2.7541e-01, 2.8880e-03, + 2DIAGNOSTIC, 18, -7.712919933300e-01, 2.942176216255e-04, 2.7829e-01, 2.8801e-03, + 2DIAGNOSTIC, 19, -7.714066633134e-01, 2.180521942381e-04, 2.8170e-01, 3.4091e-03, + 2DIAGNOSTIC, 20, -7.715628642277e-01, 1.558491203119e-04, 2.8651e-01, 4.8189e-03, + 2DIAGNOSTIC, 21, -7.715313647637e-01, 1.004650836522e-04, 2.9034e-01, 3.8280e-03, + 2DIAGNOSTIC, 22, -7.714157660926e-01, 6.260188013601e-05, 2.9339e-01, 3.0482e-03, + 2DIAGNOSTIC, 23, -7.714380901036e-01, 4.283467268102e-05, 2.9610e-01, 2.7139e-03, + 2DIAGNOSTIC, 24, -7.716124022772e-01, 2.949386478882e-05, 2.9889e-01, 2.7862e-03, + 2DIAGNOSTIC, 25, -7.715772886434e-01, 1.856077715541e-05, 3.0155e-01, 2.6591e-03, + 2DIAGNOSTIC, 26, -7.716290930060e-01, 1.174782748004e-05, 3.0454e-01, 2.9891e-03, + 2DIAGNOSTIC, 27, -7.716209413283e-01, 9.089611358537e-06, 3.0738e-01, 2.8400e-03, + 2DIAGNOSTIC, 28, -7.717771629316e-01, 9.016632492399e-06, 3.0992e-01, 2.5370e-03, + 2DIAGNOSTIC, 29, -7.718555735408e-01, 1.050429672682e-05, 3.1378e-01, 3.8621e-03, + 2DIAGNOSTIC, 30, -7.718918177479e-01, 1.337163153452e-05, 3.1656e-01, 2.7771e-03, + 2DIAGNOSTIC, 31, -7.719666503888e-01, 1.550420859290e-05, 3.1994e-01, 3.3879e-03, + 2DIAGNOSTIC, 32, -7.719931734385e-01, 1.509764768461e-05, 3.2237e-01, 2.4319e-03, + 2DIAGNOSTIC, 33, -7.721067856039e-01, 1.482986663143e-05, 3.2471e-01, 2.3341e-03, + 2DIAGNOSTIC, 34, -7.721615720234e-01, 1.573448859743e-05, 3.2731e-01, 2.6019e-03, + 2DIAGNOSTIC, 35, -7.722046861529e-01, 1.526648002182e-05, 3.2963e-01, 2.3229e-03, + 2DIAGNOSTIC, 36, -7.721830095162e-01, 1.380274641681e-05, 3.3221e-01, 2.5780e-03, + 2DIAGNOSTIC, 37, -7.722601277773e-01, 1.185934430799e-05, 3.3480e-01, 2.5921e-03, + 2DIAGNOSTIC, 38, -7.722338185347e-01, 1.019319723142e-05, 3.3737e-01, 2.5711e-03, + 2DIAGNOSTIC, 39, -7.722099977285e-01, 8.241176367777e-06, 3.3970e-01, 2.3270e-03, + 2DIAGNOSTIC, 40, -7.721029139174e-01, 5.031590830953e-06, 3.4203e-01, 2.3260e-03, + 2DIAGNOSTIC, 41, -7.721526122778e-01, 2.733727009971e-06, 3.4434e-01, 2.3160e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.775406590736e-01, 1.797693134862e+308, 4.0584e-01, 6.1493e-02, + 2DIAGNOSTIC, 2, -5.779231520071e-01, 1.797693134862e+308, 4.1806e-01, 1.2224e-02, + 2DIAGNOSTIC, 3, -5.784940946424e-01, 1.797693134862e+308, 4.3152e-01, 1.3463e-02, + 2DIAGNOSTIC, 4, -5.793940483856e-01, 1.797693134862e+308, 4.4290e-01, 1.1381e-02, + 2DIAGNOSTIC, 5, -5.805972810629e-01, 1.797693134862e+308, 4.5438e-01, 1.1476e-02, + 2DIAGNOSTIC, 6, -5.820167054179e-01, 1.797693134862e+308, 4.6585e-01, 1.1472e-02, + 2DIAGNOSTIC, 7, -5.839320043930e-01, 1.797693134862e+308, 4.7739e-01, 1.1538e-02, + 2DIAGNOSTIC, 8, -5.862393446574e-01, 1.797693134862e+308, 4.9030e-01, 1.2908e-02, + 2DIAGNOSTIC, 9, -5.874632510467e-01, 1.797693134862e+308, 5.0772e-01, 1.7423e-02, + 2DIAGNOSTIC, 10, -5.876252087328e-01, 1.282834764423e-03, 5.1946e-01, 1.1738e-02, + 2DIAGNOSTIC, 11, -5.881336887930e-01, 1.191443379749e-03, 5.3108e-01, 1.1618e-02, + 2DIAGNOSTIC, 12, -5.890645757833e-01, 1.061121218302e-03, 5.4275e-01, 1.1671e-02, + 2DIAGNOSTIC, 13, -5.893479107624e-01, 8.853808918024e-04, 5.5592e-01, 1.3176e-02, + 2DIAGNOSTIC, 14, -5.896119138960e-01, 6.951046158147e-04, 5.6924e-01, 1.3317e-02, + 2DIAGNOSTIC, 15, -5.898122591387e-01, 5.134082460379e-04, 5.8360e-01, 1.4356e-02, + 2DIAGNOSTIC, 16, -5.898878707468e-01, 3.526281491154e-04, 5.9652e-01, 1.2927e-02, + 2DIAGNOSTIC, 17, -5.899811372220e-01, 2.342455310621e-04, 6.0761e-01, 1.1087e-02, + 2DIAGNOSTIC, 18, -5.900106465806e-01, 1.698143009621e-04, 6.2007e-01, 1.2458e-02, + 2DIAGNOSTIC, 19, -5.900302738655e-01, 1.287178258381e-04, 6.3251e-01, 1.2442e-02, + 2DIAGNOSTIC, 20, -5.900342660338e-01, 8.393520395159e-05, 6.4705e-01, 1.4539e-02, + 2DIAGNOSTIC, 21, -5.900272839482e-01, 4.688111076856e-05, 6.5924e-01, 1.2194e-02, + 2DIAGNOSTIC, 22, -5.900353436341e-01, 2.960720635962e-05, 6.7320e-01, 1.3951e-02, + 2DIAGNOSTIC, 23, -5.900346818594e-01, 1.706076032824e-05, 6.8696e-01, 1.3763e-02, + 2DIAGNOSTIC, 24, -5.900390473884e-01, 9.439720157170e-06, 7.0118e-01, 1.4224e-02, + 2DIAGNOSTIC, 25, -5.900351970652e-01, 5.465163772152e-06, 7.1470e-01, 1.3521e-02, + 2DIAGNOSTIC, 26, -5.900399180720e-01, 2.867797332697e-06, 7.2680e-01, 1.2094e-02, + 2DIAGNOSTIC, 27, -5.900408200315e-01, 1.984794401368e-06, 7.3973e-01, 1.2933e-02, + 2DIAGNOSTIC, 28, -5.900463278342e-01, 1.683124751246e-06, 7.5148e-01, 1.1752e-02, + 2DIAGNOSTIC, 29, -5.900589120519e-01, 1.885663045258e-06, 7.6488e-01, 1.3396e-02, + 2DIAGNOSTIC, 30, -5.900693277587e-01, 2.233620168685e-06, 7.7748e-01, 1.2605e-02, + 2DIAGNOSTIC, 31, -5.900806489793e-01, 2.511606337956e-06, 7.9266e-01, 1.5179e-02, + 2DIAGNOSTIC, 32, -5.900810315253e-01, 2.758914894853e-06, 8.0404e-01, 1.1379e-02, + 2DIAGNOSTIC, 33, -5.900821795342e-01, 2.832178768980e-06, 8.1542e-01, 1.1377e-02, + 2DIAGNOSTIC, 34, -5.901057948918e-01, 3.123156622965e-06, 8.2905e-01, 1.3633e-02, + 2DIAGNOSTIC, 35, -5.901123983231e-01, 3.214811771932e-06, 8.4239e-01, 1.3334e-02, + 2DIAGNOSTIC, 36, -5.901349444382e-01, 3.450427474006e-06, 8.5347e-01, 1.1086e-02, + 2DIAGNOSTIC, 37, -5.902132751590e-01, 4.463788565650e-06, 8.6602e-01, 1.2553e-02, + 2DIAGNOSTIC, 38, -5.902053100632e-01, 5.023738874423e-06, 8.8051e-01, 1.4490e-02, + 2DIAGNOSTIC, 39, -5.902561442794e-01, 5.954095803326e-06, 9.1818e-01, 3.7666e-02, + 2DIAGNOSTIC, 40, -5.902561437971e-01, 6.463528392071e-06, 9.2973e-01, 1.1548e-02, + 2DIAGNOSTIC, 41, -5.902561492703e-01, 6.542968905895e-06, 9.4082e-01, 1.1087e-02, + 2DIAGNOSTIC, 42, -5.902561585222e-01, 6.070607933513e-06, 9.5196e-01, 1.1147e-02, + 2DIAGNOSTIC, 43, -5.902561741566e-01, 5.119515463659e-06, 9.6306e-01, 1.1096e-02, + 2DIAGNOSTIC, 44, -5.902562005648e-01, 4.058904212009e-06, 9.7414e-01, 1.1081e-02, + 2DIAGNOSTIC, 45, -5.902528197338e-01, 2.761155527633e-06, 9.8537e-01, 1.1231e-02, + 2DIAGNOSTIC, 46, -5.902528949558e-01, 1.546407840277e-06, 9.9687e-01, 1.1495e-02, + 2DIAGNOSTIC, 47, -5.902530214311e-01, 1.116543239286e-06, 1.0085e+00, 1.1667e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.912821404053e-01, 1.797693134862e+308, 1.2013e+00, 1.9281e-01, + Elapsed time (stage 1): 1.2270e+00 + + +Total elapsed time: 2.4101e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:12:58 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 26 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 78 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 87.66% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 87.66% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[ 9974 2560 10286 354 1648 0 0 1926 0 7553 187 0 + 201 1512 369 2043 3017 0 860 251 908 347 1062 429 + 0 0] +[190406 28617 12973 16559 14983 9622 7841 10138 11580 5405 + 7468 3057 5490 5355 3283 7072 552 1383 890 382 + 440 219 367 548 1075 159] +[14122 0 267 0 562 0 10078 0 4551 0 745 0 + 3938 0 11876 0 216 0 0 174 3654 12252 0 7617 + 0 0] +[ 319 7882 4482 2595 3359 4474 192222 8880 26438 587 + 0 1764 0 1108 171 2286 11409 4939 5353 10801 + 0 934 6772 445 645 4574] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:21:31 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:21:37 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:21 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:21 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:21 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:31 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:34 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC007 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:52 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:26:16 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:28:06 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:28:07 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:29:23 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:29:23 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5632af2d7d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.2585, 126.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5632af14e730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f07afdc7010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5632af2db020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.592, 68.3168, -110.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5632af2e10c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f07ac708010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5632af2f1840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.2585, 126.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5632af2dd890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f07a7a34010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x5632af2f53e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.592, 68.3168, -110.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5632af2e4130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f07a4375010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.387013404435e-01, 1.797693134862e+308, 2.3328e-01, 2.3328e-01, + 2DIAGNOSTIC, 2, -4.400221408382e-01, 1.797693134862e+308, 2.3475e-01, 1.4691e-03, + 2DIAGNOSTIC, 3, -4.408530221261e-01, 1.797693134862e+308, 2.3607e-01, 1.3261e-03, + 2DIAGNOSTIC, 4, -4.413194293047e-01, 1.797693134862e+308, 2.3759e-01, 1.5140e-03, + 2DIAGNOSTIC, 5, -4.417655310586e-01, 1.797693134862e+308, 2.3909e-01, 1.5039e-03, + 2DIAGNOSTIC, 6, -4.440901131901e-01, 1.797693134862e+308, 2.4086e-01, 1.7662e-03, + 2DIAGNOSTIC, 7, -4.469698175964e-01, 1.797693134862e+308, 2.4236e-01, 1.5049e-03, + 2DIAGNOSTIC, 8, -4.704561413179e-01, 1.797693134862e+308, 2.4484e-01, 2.4810e-03, + 2DIAGNOSTIC, 9, -4.742955536426e-01, 1.797693134862e+308, 2.4653e-01, 1.6890e-03, + 2DIAGNOSTIC, 10, -4.749320772199e-01, 5.669298757107e-03, 2.4823e-01, 1.6990e-03, + 2DIAGNOSTIC, 11, -4.753522363696e-01, 5.820907918473e-03, 2.4985e-01, 1.6129e-03, + 2DIAGNOSTIC, 12, -4.762414565023e-01, 5.535492850687e-03, 2.5173e-01, 1.8899e-03, + 2DIAGNOSTIC, 13, -4.761486642286e-01, 4.814210116550e-03, 2.5333e-01, 1.5981e-03, + 2DIAGNOSTIC, 14, -4.772533602450e-01, 3.829914473615e-03, 2.5499e-01, 1.6570e-03, + 2DIAGNOSTIC, 15, -4.782101883085e-01, 2.703450646053e-03, 2.5688e-01, 1.8899e-03, + 2DIAGNOSTIC, 16, -4.783413272944e-01, 1.579645017288e-03, 2.5904e-01, 2.1610e-03, + 2DIAGNOSTIC, 17, -4.781780978603e-01, 5.241675240578e-04, 2.6145e-01, 2.4109e-03, + 2DIAGNOSTIC, 18, -4.782346861907e-01, 3.421101941181e-04, 2.6339e-01, 1.9410e-03, + 2DIAGNOSTIC, 19, -4.785528510639e-01, 2.817495052841e-04, 2.6509e-01, 1.6971e-03, + 2DIAGNOSTIC, 20, -4.786011773603e-01, 2.215213749250e-04, 2.6678e-01, 1.6918e-03, + 2DIAGNOSTIC, 21, -4.787298383056e-01, 1.624060417753e-04, 2.6851e-01, 1.7300e-03, + 2DIAGNOSTIC, 22, -4.798260701170e-01, 1.498641881089e-04, 2.7022e-01, 1.7090e-03, + 2DIAGNOSTIC, 23, -4.814263509948e-01, 1.632084345110e-04, 2.7255e-01, 2.3270e-03, + 2DIAGNOSTIC, 24, -4.816889548650e-01, 1.932805344432e-04, 2.7413e-01, 1.5869e-03, + 2DIAGNOSTIC, 25, -4.821632813775e-01, 2.381974865780e-04, 2.7574e-01, 1.6060e-03, + 2DIAGNOSTIC, 26, -4.826202012655e-01, 2.714816312746e-04, 2.7736e-01, 1.6148e-03, + 2DIAGNOSTIC, 27, -4.869281144700e-01, 3.691745095714e-04, 2.7945e-01, 2.0912e-03, + 2DIAGNOSTIC, 28, -4.866349711958e-01, 4.166594533797e-04, 2.8106e-01, 1.6179e-03, + 2DIAGNOSTIC, 29, -4.903486928201e-01, 5.069960693251e-04, 2.8290e-01, 1.8401e-03, + 2DIAGNOSTIC, 30, -4.924979193358e-01, 5.871182242962e-04, 2.8525e-01, 2.3429e-03, + 2DIAGNOSTIC, 31, -4.946278523536e-01, 6.491809032346e-04, 2.8709e-01, 1.8461e-03, + 2DIAGNOSTIC, 32, -4.947820817858e-01, 6.678034882561e-04, 2.8898e-01, 1.8830e-03, + 2DIAGNOSTIC, 33, -4.957252056138e-01, 6.690098513890e-04, 2.9083e-01, 1.8489e-03, + 2DIAGNOSTIC, 34, -4.979034914027e-01, 6.498158348038e-04, 2.9266e-01, 1.8380e-03, + 2DIAGNOSTIC, 35, -4.980839561573e-01, 5.801625176514e-04, 2.9428e-01, 1.6189e-03, + 2DIAGNOSTIC, 36, -4.986720365533e-01, 4.756589168885e-04, 2.9617e-01, 1.8861e-03, + 2DIAGNOSTIC, 37, -4.991118274553e-01, 4.100990525768e-04, 2.9776e-01, 1.5888e-03, + 2DIAGNOSTIC, 38, -5.002873411224e-01, 3.219093372776e-04, 2.9939e-01, 1.6291e-03, + 2DIAGNOSTIC, 39, -5.034524745479e-01, 3.114743542169e-04, 3.0128e-01, 1.8890e-03, + 2DIAGNOSTIC, 40, -5.120810994355e-01, 4.301551017522e-04, 3.0312e-01, 1.8489e-03, + 2DIAGNOSTIC, 41, -5.196580051509e-01, 6.396725373828e-04, 3.0594e-01, 2.8131e-03, + 2DIAGNOSTIC, 42, -5.201029295123e-01, 7.849103452504e-04, 3.0751e-01, 1.5678e-03, + 2DIAGNOSTIC, 43, -5.217354866617e-01, 8.852493181135e-04, 3.0906e-01, 1.5571e-03, + 2DIAGNOSTIC, 44, -5.225939406692e-01, 9.369344353846e-04, 3.1089e-01, 1.8320e-03, + 2DIAGNOSTIC, 45, -5.232941697276e-01, 9.059519621917e-04, 3.1250e-01, 1.6060e-03, + 2DIAGNOSTIC, 46, -5.233913022923e-01, 7.975412578773e-04, 3.1432e-01, 1.8220e-03, + 2DIAGNOSTIC, 47, -5.238303773767e-01, 6.304474595690e-04, 3.1655e-01, 2.2268e-03, + 2DIAGNOSTIC, 48, -5.249106447560e-01, 4.394172108259e-04, 3.1838e-01, 1.8349e-03, + 2DIAGNOSTIC, 49, -5.247564586077e-01, 2.484081266778e-04, 3.1996e-01, 1.5762e-03, + 2DIAGNOSTIC, 50, -5.253642089837e-01, 1.476461613199e-04, 3.2155e-01, 1.5872e-03, + 2DIAGNOSTIC, 51, -5.259019279809e-01, 1.299088457254e-04, 3.2383e-01, 2.2788e-03, + 2DIAGNOSTIC, 52, -5.269845687644e-01, 1.170771330324e-04, 3.2661e-01, 2.7821e-03, + 2DIAGNOSTIC, 53, -5.271041861822e-01, 1.122800259644e-04, 3.2818e-01, 1.5681e-03, + 2DIAGNOSTIC, 54, -5.277848364021e-01, 1.135296489601e-04, 3.2974e-01, 1.5681e-03, + 2DIAGNOSTIC, 55, -5.285598212239e-01, 1.195179964390e-04, 3.3129e-01, 1.5490e-03, + 2DIAGNOSTIC, 56, -5.291196124502e-01, 1.203463582146e-04, 3.3312e-01, 1.8220e-03, + 2DIAGNOSTIC, 57, -5.293295855676e-01, 1.158301512599e-04, 3.3471e-01, 1.5900e-03, + 2DIAGNOSTIC, 58, -5.292525815460e-01, 1.106468808417e-04, 3.3628e-01, 1.5790e-03, + 2DIAGNOSTIC, 59, -5.296249724742e-01, 9.726738671807e-05, 3.3790e-01, 1.6170e-03, + 2DIAGNOSTIC, 60, -5.300724455432e-01, 8.494226587776e-05, 3.3951e-01, 1.6050e-03, + 2DIAGNOSTIC, 61, -5.305755067549e-01, 7.435707484576e-05, 3.4235e-01, 2.8460e-03, + 2DIAGNOSTIC, 62, -5.303311436324e-01, 6.488943840608e-05, 3.4394e-01, 1.5860e-03, + 2DIAGNOSTIC, 63, -5.303586486860e-01, 5.106302970723e-05, 3.4554e-01, 1.6060e-03, + 2DIAGNOSTIC, 64, -5.303948647026e-01, 3.911718696049e-05, 3.4715e-01, 1.6100e-03, + 2DIAGNOSTIC, 65, -5.305082777886e-01, 3.140369322729e-05, 3.4947e-01, 2.3160e-03, + 2DIAGNOSTIC, 66, -5.312799040567e-01, 3.238748321293e-05, 3.5205e-01, 2.5830e-03, + 2DIAGNOSTIC, 67, -5.312822087850e-01, 3.204676217529e-05, 3.5369e-01, 1.6322e-03, + 2DIAGNOSTIC, 68, -5.312931210195e-01, 2.824568738619e-05, 3.5533e-01, 1.6489e-03, + 2DIAGNOSTIC, 69, -5.313103702436e-01, 2.511065111531e-05, 3.5696e-01, 1.6229e-03, + 2DIAGNOSTIC, 70, -5.313344955264e-01, 2.335396035244e-05, 3.5857e-01, 1.6091e-03, + 2DIAGNOSTIC, 71, -5.313627142516e-01, 2.365550860137e-05, 3.6038e-01, 1.8129e-03, + 2DIAGNOSTIC, 72, -5.313854586454e-01, 1.995165705596e-05, 3.6198e-01, 1.6041e-03, + 2DIAGNOSTIC, 73, -5.310514582648e-01, 1.219308955456e-05, 3.6356e-01, 1.5750e-03, + 2DIAGNOSTIC, 74, -5.314617264375e-01, 7.070726358336e-06, 3.6520e-01, 1.6429e-03, + 2DIAGNOSTIC, 75, -5.320541318049e-01, 6.503066652747e-06, 3.6732e-01, 2.1169e-03, + 2DIAGNOSTIC, 76, -5.324356794466e-01, 1.382861009777e-05, 3.6986e-01, 2.5461e-03, + 2DIAGNOSTIC, 77, -5.321189426429e-01, 1.737967288576e-05, 3.7142e-01, 1.5590e-03, + 2DIAGNOSTIC, 78, -5.321352298031e-01, 1.959666881097e-05, 3.7298e-01, 1.5600e-03, + 2DIAGNOSTIC, 79, -5.321725436901e-01, 2.025255262682e-05, 3.7456e-01, 1.5810e-03, + 2DIAGNOSTIC, 80, -5.327128004875e-01, 2.278410324714e-05, 3.7613e-01, 1.5690e-03, + 2DIAGNOSTIC, 81, -5.340658806419e-01, 3.257058558398e-05, 3.7819e-01, 2.0599e-03, + 2DIAGNOSTIC, 82, -5.341538379915e-01, 3.973624859889e-05, 3.8002e-01, 1.8251e-03, + 2DIAGNOSTIC, 83, -5.350249885486e-01, 4.673590975159e-05, 3.8194e-01, 1.9259e-03, + 2DIAGNOSTIC, 84, -5.355887554447e-01, 5.546366031559e-05, 3.8379e-01, 1.8411e-03, + 2DIAGNOSTIC, 85, -5.360997986667e-01, 6.573854323146e-05, 3.8541e-01, 1.6260e-03, + 2DIAGNOSTIC, 86, -5.376609437259e-01, 8.208486808770e-05, 3.8699e-01, 1.5829e-03, + 2DIAGNOSTIC, 87, -5.392243784274e-01, 9.798843412440e-05, 3.8958e-01, 2.5890e-03, + 2DIAGNOSTIC, 88, -5.399550610079e-01, 1.087923850163e-04, 3.9121e-01, 1.6310e-03, + 2DIAGNOSTIC, 89, -5.398377980698e-01, 1.084259887559e-04, 3.9307e-01, 1.8580e-03, + 2DIAGNOSTIC, 90, -5.401963453981e-01, 1.032053913895e-04, 3.9516e-01, 2.0900e-03, + 2DIAGNOSTIC, 91, -5.406069505148e-01, 9.891711652827e-05, 3.9870e-01, 3.5391e-03, + 2DIAGNOSTIC, 92, -5.406087098615e-01, 8.541661799080e-05, 4.0029e-01, 1.5910e-03, + 2DIAGNOSTIC, 93, -5.406702822342e-01, 6.966080586172e-05, 4.0210e-01, 1.8060e-03, + 2DIAGNOSTIC, 94, -5.407066891882e-01, 5.132139299930e-05, 4.0369e-01, 1.5941e-03, + 2DIAGNOSTIC, 95, -5.403912559896e-01, 2.948748134456e-05, 4.0532e-01, 1.6282e-03, + 2DIAGNOSTIC, 96, -5.404751194176e-01, 1.467471935836e-05, 4.0693e-01, 1.6110e-03, + 2DIAGNOSTIC, 97, -5.405881007662e-01, 8.302975046838e-06, 4.0852e-01, 1.5919e-03, + 2DIAGNOSTIC, 98, -5.407159744388e-01, 6.216356043072e-06, 4.1012e-01, 1.5960e-03, + 2DIAGNOSTIC, 99, -5.408200097270e-01, 3.498565563018e-06, 4.1171e-01, 1.5950e-03, + 2DIAGNOSTIC, 100, -5.408751342253e-01, 2.805467491958e-06, 4.1328e-01, 1.5700e-03, + 2DIAGNOSTIC, 101, -5.405416253299e-01, 2.326015690569e-06, 4.1519e-01, 1.9031e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.995667042841e-01, 1.797693134862e+308, 6.4653e-01, 2.3135e-01, + 2DIAGNOSTIC, 2, -3.985676444601e-01, 1.797693134862e+308, 6.4866e-01, 2.1279e-03, + 2DIAGNOSTIC, 3, -3.992618686416e-01, 1.797693134862e+308, 6.5061e-01, 1.9441e-03, + 2DIAGNOSTIC, 4, -4.010409403299e-01, 1.797693134862e+308, 6.5280e-01, 2.1980e-03, + 2DIAGNOSTIC, 5, -4.020685321747e-01, 1.797693134862e+308, 6.5510e-01, 2.2931e-03, + 2DIAGNOSTIC, 6, -4.021876539868e-01, 1.797693134862e+308, 6.5762e-01, 2.5241e-03, + 2DIAGNOSTIC, 7, -4.024902346571e-01, 1.797693134862e+308, 6.5950e-01, 1.8811e-03, + 2DIAGNOSTIC, 8, -4.039701642887e-01, 1.797693134862e+308, 6.6141e-01, 1.9112e-03, + 2DIAGNOSTIC, 9, -4.045714077909e-01, 1.797693134862e+308, 6.6363e-01, 2.2111e-03, + 2DIAGNOSTIC, 10, -4.048431462153e-01, 1.030350245504e-03, 6.6578e-01, 2.1532e-03, + 2DIAGNOSTIC, 11, -4.052067611785e-01, 9.621809669521e-04, 6.6792e-01, 2.1431e-03, + 2DIAGNOSTIC, 12, -4.057950786592e-01, 7.958012357885e-04, 6.7008e-01, 2.1629e-03, + 2DIAGNOSTIC, 13, -4.066451815611e-01, 6.634068025019e-04, 6.7240e-01, 2.3148e-03, + 2DIAGNOSTIC, 14, -4.076511768604e-01, 6.276874580655e-04, 6.7686e-01, 4.4570e-03, + 2DIAGNOSTIC, 15, -4.083665667792e-01, 6.218515156931e-04, 6.8008e-01, 3.2270e-03, + 2DIAGNOSTIC, 16, -4.084854951872e-01, 5.710942370933e-04, 6.8273e-01, 2.6512e-03, + 2DIAGNOSTIC, 17, -4.090448584832e-01, 5.086605350471e-04, 6.8534e-01, 2.6069e-03, + 2DIAGNOSTIC, 18, -4.095200685972e-01, 4.815473044190e-04, 6.8798e-01, 2.6422e-03, + 2DIAGNOSTIC, 19, -4.101726680904e-01, 4.584034064382e-04, 6.9024e-01, 2.2581e-03, + 2DIAGNOSTIC, 20, -4.118690035058e-01, 4.638150526219e-04, 6.9253e-01, 2.2919e-03, + 2DIAGNOSTIC, 21, -4.139040172229e-01, 5.046349052193e-04, 6.9514e-01, 2.6059e-03, + 2DIAGNOSTIC, 22, -4.145355223712e-01, 5.322755598161e-04, 6.9769e-01, 2.5499e-03, + 2DIAGNOSTIC, 23, -4.184457619516e-01, 6.524543673058e-04, 7.0033e-01, 2.6450e-03, + 2DIAGNOSTIC, 24, -4.388565687468e-01, 1.318915246987e-03, 7.0262e-01, 2.2879e-03, + 2DIAGNOSTIC, 25, -4.454912241072e-01, 1.992413076398e-03, 7.0500e-01, 2.3820e-03, + 2DIAGNOSTIC, 26, -4.532726803461e-01, 2.633485651748e-03, 7.0733e-01, 2.3241e-03, + 2DIAGNOSTIC, 27, -4.609990113994e-01, 3.189147458164e-03, 7.1034e-01, 3.0138e-03, + 2DIAGNOSTIC, 28, -4.663383540207e-01, 3.538800688595e-03, 7.1270e-01, 2.3561e-03, + 2DIAGNOSTIC, 29, -4.692969986527e-01, 3.605093475347e-03, 7.1615e-01, 3.4559e-03, + 2DIAGNOSTIC, 30, -4.756571246919e-01, 3.505487547932e-03, 7.1947e-01, 3.3200e-03, + 2DIAGNOSTIC, 31, -4.855174028741e-01, 3.342295566269e-03, 7.2195e-01, 2.4772e-03, + 2DIAGNOSTIC, 32, -4.903329703146e-01, 2.987103493379e-03, 7.2499e-01, 3.0429e-03, + 2DIAGNOSTIC, 33, -4.934234395950e-01, 2.507612578237e-03, 7.2774e-01, 2.7449e-03, + 2DIAGNOSTIC, 34, -4.967233464044e-01, 2.288713950505e-03, 7.3047e-01, 2.7351e-03, + 2DIAGNOSTIC, 35, -5.044548749851e-01, 2.135294008101e-03, 7.3462e-01, 4.1471e-03, + 2DIAGNOSTIC, 36, -5.089566847728e-01, 2.005819632696e-03, 7.3764e-01, 3.0222e-03, + 2DIAGNOSTIC, 37, -5.137527910560e-01, 1.913674649423e-03, 7.3999e-01, 2.3439e-03, + 2DIAGNOSTIC, 38, -5.207932925835e-01, 1.859508496004e-03, 7.4272e-01, 2.7342e-03, + 2DIAGNOSTIC, 39, -5.272666085906e-01, 1.786018265376e-03, 7.4537e-01, 2.6481e-03, + 2DIAGNOSTIC, 40, -5.289551764068e-01, 1.671414144661e-03, 7.4865e-01, 3.2840e-03, + 2DIAGNOSTIC, 41, -5.299770526082e-01, 1.574694566624e-03, 7.5096e-01, 2.3019e-03, + 2DIAGNOSTIC, 42, -5.307986826681e-01, 1.420308356686e-03, 7.5321e-01, 2.2581e-03, + 2DIAGNOSTIC, 43, -5.332623000654e-01, 1.220339684441e-03, 7.5583e-01, 2.6162e-03, + 2DIAGNOSTIC, 44, -5.363575851130e-01, 1.002990533816e-03, 7.5843e-01, 2.6040e-03, + 2DIAGNOSTIC, 45, -5.416622951534e-01, 8.832008064799e-04, 7.6069e-01, 2.2581e-03, + 2DIAGNOSTIC, 46, -5.499298790989e-01, 8.587009660375e-04, 7.6346e-01, 2.7640e-03, + 2DIAGNOSTIC, 47, -5.575085524371e-01, 9.144625167400e-04, 7.6621e-01, 2.7521e-03, + 2DIAGNOSTIC, 48, -5.834730258167e-01, 1.302743686060e-03, 7.6929e-01, 3.0780e-03, + 2DIAGNOSTIC, 49, -6.264838998048e-01, 2.157942444498e-03, 7.7245e-01, 3.1600e-03, + 2DIAGNOSTIC, 50, -6.277776969677e-01, 2.786972811329e-03, 7.7462e-01, 2.1751e-03, + 2DIAGNOSTIC, 51, -6.292460449231e-01, 3.156212835336e-03, 7.7711e-01, 2.4910e-03, + 2DIAGNOSTIC, 52, -6.292778997129e-01, 3.221128845999e-03, 7.7958e-01, 2.4681e-03, + 2DIAGNOSTIC, 53, -6.295540037954e-01, 3.001199079726e-03, 7.8205e-01, 2.4738e-03, + 2DIAGNOSTIC, 54, -6.319821293563e-01, 2.558228243895e-03, 7.8542e-01, 3.3700e-03, + 2DIAGNOSTIC, 55, -6.328575882219e-01, 1.959021207035e-03, 7.8787e-01, 2.4459e-03, + 2DIAGNOSTIC, 56, -6.328942821374e-01, 1.296280181834e-03, 7.9036e-01, 2.4900e-03, + 2DIAGNOSTIC, 57, -6.326003396215e-01, 6.132117153979e-04, 7.9254e-01, 2.1780e-03, + 2DIAGNOSTIC, 58, -6.329319975171e-01, 1.543297573328e-04, 7.9495e-01, 2.4161e-03, + 2DIAGNOSTIC, 59, -6.330663670845e-01, 1.239412694997e-04, 7.9724e-01, 2.2819e-03, + 2DIAGNOSTIC, 60, -6.337550643351e-01, 1.014801264948e-04, 7.9984e-01, 2.6062e-03, + 2DIAGNOSTIC, 61, -6.367972100457e-01, 1.129978653327e-04, 8.0308e-01, 3.2351e-03, + 2DIAGNOSTIC, 62, -6.367803017231e-01, 1.130733366210e-04, 8.0537e-01, 2.2950e-03, + 2DIAGNOSTIC, 63, -6.371330691220e-01, 1.079127887002e-04, 8.0796e-01, 2.5840e-03, + 2DIAGNOSTIC, 64, -6.372295610157e-01, 1.150498850934e-04, 8.1042e-01, 2.4590e-03, + 2DIAGNOSTIC, 65, -6.373338831920e-01, 1.192506086815e-04, 8.1349e-01, 3.0701e-03, + 2DIAGNOSTIC, 66, -6.373026573760e-01, 1.116548303213e-04, 8.1597e-01, 2.4831e-03, + 2DIAGNOSTIC, 67, -6.373926102742e-01, 9.193535818813e-05, 8.1815e-01, 2.1861e-03, + 2DIAGNOSTIC, 68, -6.373441646862e-01, 6.687530522730e-05, 8.2036e-01, 2.2070e-03, + 2DIAGNOSTIC, 69, -6.374392412674e-01, 3.832330366772e-05, 8.2253e-01, 2.1701e-03, + 2DIAGNOSTIC, 70, -6.375559351817e-01, 1.285038960185e-05, 8.2502e-01, 2.4841e-03, + 2DIAGNOSTIC, 71, -6.376701628909e-01, 1.163692328909e-05, 8.2751e-01, 2.4939e-03, + 2DIAGNOSTIC, 72, -6.377506263045e-01, 9.817897240121e-06, 8.2970e-01, 2.1892e-03, + 2DIAGNOSTIC, 73, -6.377837729965e-01, 1.005933175759e-05, 8.3187e-01, 2.1679e-03, + 2DIAGNOSTIC, 74, -6.380669904246e-01, 1.216660956375e-05, 8.3544e-01, 3.5732e-03, + 2DIAGNOSTIC, 75, -6.380064536769e-01, 1.334553308402e-05, 8.3834e-01, 2.8970e-03, + 2DIAGNOSTIC, 76, -6.380776814857e-01, 1.354797443606e-05, 8.4168e-01, 3.3398e-03, + 2DIAGNOSTIC, 77, -6.383147151550e-01, 1.481976854967e-05, 8.4486e-01, 3.1829e-03, + 2DIAGNOSTIC, 78, -6.384545507943e-01, 1.524870428831e-05, 8.4792e-01, 3.0570e-03, + 2DIAGNOSTIC, 79, -6.393452887950e-01, 2.092887530544e-05, 8.5029e-01, 2.3701e-03, + 2DIAGNOSTIC, 80, -6.392101550526e-01, 2.419665528827e-05, 8.5294e-01, 2.6581e-03, + 2DIAGNOSTIC, 81, -6.394841337659e-01, 2.776722134396e-05, 8.5551e-01, 2.5630e-03, + 2DIAGNOSTIC, 82, -6.399928484895e-01, 3.245408759360e-05, 8.5763e-01, 2.1181e-03, + 2DIAGNOSTIC, 83, -6.419457446765e-01, 4.650033706559e-05, 8.6009e-01, 2.4679e-03, + 2DIAGNOSTIC, 84, -6.420998014578e-01, 5.813368272324e-05, 8.6261e-01, 2.5189e-03, + 2DIAGNOSTIC, 85, -6.420390024219e-01, 6.329642546938e-05, 8.6521e-01, 2.5959e-03, + 2DIAGNOSTIC, 86, -6.426327061465e-01, 6.658496373524e-05, 8.6746e-01, 2.2531e-03, + 2DIAGNOSTIC, 87, -6.428539942736e-01, 6.601685388788e-05, 8.7011e-01, 2.6469e-03, + 2DIAGNOSTIC, 88, -6.434629583080e-01, 6.327095794481e-05, 8.7268e-01, 2.5749e-03, + 2DIAGNOSTIC, 89, -6.437400192955e-01, 6.143842693567e-05, 8.7485e-01, 2.1710e-03, + 2DIAGNOSTIC, 90, -6.439748039511e-01, 5.452872003331e-05, 8.7754e-01, 2.6841e-03, + 2DIAGNOSTIC, 91, -6.442472276306e-01, 4.576241255105e-05, 8.7996e-01, 2.4199e-03, + 2DIAGNOSTIC, 92, -6.443442833104e-01, 3.592179277423e-05, 8.8207e-01, 2.1150e-03, + 2DIAGNOSTIC, 93, -6.444675637580e-01, 3.452793946658e-05, 8.8425e-01, 2.1729e-03, + 2DIAGNOSTIC, 94, -6.450020854731e-01, 3.372358076665e-05, 8.8694e-01, 2.6951e-03, + 2DIAGNOSTIC, 95, -6.453630380851e-01, 3.123739602784e-05, 8.8930e-01, 2.3580e-03, + 2DIAGNOSTIC, 96, -6.453528293069e-01, 2.897263418508e-05, 8.9174e-01, 2.4412e-03, + 2DIAGNOSTIC, 97, -6.453387998668e-01, 2.510656585325e-05, 8.9386e-01, 2.1231e-03, + 2DIAGNOSTIC, 98, -6.456382273528e-01, 2.373900523236e-05, 8.9595e-01, 2.0890e-03, + 2DIAGNOSTIC, 99, -6.459485698120e-01, 2.309396545892e-05, 8.9841e-01, 2.4590e-03, + 2DIAGNOSTIC, 100, -6.468284236169e-01, 2.591341217137e-05, 9.0075e-01, 2.3389e-03, + 2DIAGNOSTIC, 101, -6.471453639014e-01, 2.914544672244e-05, 9.0419e-01, 3.4368e-03, + 2DIAGNOSTIC, 102, -6.473247123140e-01, 3.098452077661e-05, 9.0649e-01, 2.2979e-03, + 2DIAGNOSTIC, 103, -6.474308258138e-01, 3.094044165029e-05, 9.0874e-01, 2.2550e-03, + 2DIAGNOSTIC, 104, -6.474084177691e-01, 3.037943496961e-05, 9.1097e-01, 2.2342e-03, + 2DIAGNOSTIC, 105, -6.471591522181e-01, 2.743436431748e-05, 9.1296e-01, 1.9870e-03, + 2DIAGNOSTIC, 106, -6.470549971526e-01, 2.142376858321e-05, 9.1520e-01, 2.2430e-03, + 2DIAGNOSTIC, 107, -6.470725094464e-01, 1.354224516479e-05, 9.1716e-01, 1.9572e-03, + 2DIAGNOSTIC, 108, -6.469459930965e-01, 5.360431700723e-06, 9.1911e-01, 1.9460e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.155503118047e-01, 1.797693134862e+308, 1.1746e+00, 2.5550e-01, + 2DIAGNOSTIC, 2, -5.174728936787e-01, 1.797693134862e+308, 1.1869e+00, 1.2311e-02, + 2DIAGNOSTIC, 3, -5.193693528468e-01, 1.797693134862e+308, 1.1991e+00, 1.2168e-02, + 2DIAGNOSTIC, 4, -5.202996337195e-01, 1.797693134862e+308, 1.2113e+00, 1.2200e-02, + 2DIAGNOSTIC, 5, -5.214242797846e-01, 1.797693134862e+308, 1.2235e+00, 1.2177e-02, + 2DIAGNOSTIC, 6, -5.224626460673e-01, 1.797693134862e+308, 1.2355e+00, 1.2043e-02, + 2DIAGNOSTIC, 7, -5.226772863437e-01, 1.797693134862e+308, 1.2478e+00, 1.2289e-02, + 2DIAGNOSTIC, 8, -5.232520182689e-01, 1.797693134862e+308, 1.2618e+00, 1.3965e-02, + 2DIAGNOSTIC, 9, -5.234637040128e-01, 1.797693134862e+308, 1.2777e+00, 1.5910e-02, + 2DIAGNOSTIC, 10, -5.238363775329e-01, 9.593463210810e-04, 1.2919e+00, 1.4206e-02, + 2DIAGNOSTIC, 11, -5.238159825758e-01, 6.649284535679e-04, 1.3042e+00, 1.2320e-02, + 2DIAGNOSTIC, 12, -5.238018209243e-01, 4.459672756823e-04, 1.3203e+00, 1.6151e-02, + 2DIAGNOSTIC, 13, -5.239586909487e-01, 3.068181493720e-04, 1.3344e+00, 1.4048e-02, + 2DIAGNOSTIC, 14, -5.240010040809e-01, 1.967272402204e-04, 1.3536e+00, 1.9183e-02, + 2DIAGNOSTIC, 15, -5.240055077626e-01, 1.237295390756e-04, 1.3656e+00, 1.2034e-02, + 2DIAGNOSTIC, 16, -5.239851473766e-01, 8.358760456915e-05, 1.3793e+00, 1.3716e-02, + 2DIAGNOSTIC, 17, -5.239883964833e-01, 4.743251065618e-05, 1.3930e+00, 1.3717e-02, + 2DIAGNOSTIC, 18, -5.239663094370e-01, 2.765811170589e-05, 1.4049e+00, 1.1878e-02, + 2DIAGNOSTIC, 19, -5.239582512788e-01, 1.305629183784e-05, 1.4170e+00, 1.2065e-02, + 2DIAGNOSTIC, 20, -5.239642394874e-01, 9.238077742307e-06, 1.4290e+00, 1.2019e-02, + 2DIAGNOSTIC, 21, -5.239989510010e-01, 5.512594116804e-06, 1.4430e+00, 1.3979e-02, + 2DIAGNOSTIC, 22, -5.239974807513e-01, 1.247248127417e-06, 1.4570e+00, 1.4006e-02, + 2DIAGNOSTIC, 23, -5.240223193932e-01, 1.655843790090e-06, 1.4693e+00, 1.2306e-02, + 2DIAGNOSTIC, 24, -5.240525110987e-01, 3.641093982959e-06, 1.4855e+00, 1.6210e-02, + 2DIAGNOSTIC, 25, -5.240905567610e-01, 6.163800902972e-06, 1.5037e+00, 1.8167e-02, + 2DIAGNOSTIC, 26, -5.240834440536e-01, 7.428338974519e-06, 1.5162e+00, 1.2540e-02, + 2DIAGNOSTIC, 27, -5.240759568719e-01, 7.961530528879e-06, 1.5304e+00, 1.4205e-02, + 2DIAGNOSTIC, 28, -5.240783997936e-01, 7.456898060011e-06, 1.5427e+00, 1.2240e-02, + 2DIAGNOSTIC, 29, -5.240685846650e-01, 6.040559638376e-06, 1.5556e+00, 1.2934e-02, + 2DIAGNOSTIC, 30, -5.240736585202e-01, 4.431220377937e-06, 1.5678e+00, 1.2209e-02, + 2DIAGNOSTIC, 31, -5.240566763504e-01, 2.928641565689e-06, 1.5799e+00, 1.2061e-02, + 2DIAGNOSTIC, 32, -5.240719366090e-01, 1.587851616532e-06, 1.5919e+00, 1.2087e-02, + 2DIAGNOSTIC, 33, -5.241111316127e-01, 1.309179750220e-06, 1.6059e+00, 1.3947e-02, + 2DIAGNOSTIC, 34, -5.241344818891e-01, 1.831914410326e-06, 1.6204e+00, 1.4551e-02, + 2DIAGNOSTIC, 35, -5.240896188836e-01, 2.137386895747e-06, 1.6404e+00, 1.9989e-02, + 2DIAGNOSTIC, 36, -5.242585728914e-01, 4.788902626542e-06, 1.6535e+00, 1.3067e-02, + 2DIAGNOSTIC, 37, -5.243359593677e-01, 7.871602338679e-06, 1.6676e+00, 1.4085e-02, + 2DIAGNOSTIC, 38, -5.242887184804e-01, 9.460218487377e-06, 1.6815e+00, 1.3882e-02, + 2DIAGNOSTIC, 39, -5.243605654490e-01, 1.107293663943e-05, 1.6935e+00, 1.2001e-02, + 2DIAGNOSTIC, 40, -5.244204048730e-01, 1.250787077213e-05, 1.7054e+00, 1.1954e-02, + 2DIAGNOSTIC, 41, -5.246820265760e-01, 1.594003019931e-05, 1.7196e+00, 1.4156e-02, + 2DIAGNOSTIC, 42, -5.247994127921e-01, 1.936011367779e-05, 1.7355e+00, 1.5950e-02, + 2DIAGNOSTIC, 43, -5.248685089990e-01, 2.224327211605e-05, 1.7494e+00, 1.3885e-02, + 2DIAGNOSTIC, 44, -5.249488690103e-01, 2.430618758783e-05, 1.7633e+00, 1.3836e-02, + 2DIAGNOSTIC, 45, -5.250191856610e-01, 2.425051369834e-05, 1.7773e+00, 1.4097e-02, + 2DIAGNOSTIC, 46, -5.249576918103e-01, 2.313503893349e-05, 1.7934e+00, 1.6078e-02, + 2DIAGNOSTIC, 47, -5.249617687326e-01, 2.090470393362e-05, 1.8073e+00, 1.3903e-02, + 2DIAGNOSTIC, 48, -5.249527978316e-01, 1.620955207206e-05, 1.8211e+00, 1.3780e-02, + 2DIAGNOSTIC, 49, -5.249456077614e-01, 1.094196266926e-05, 1.8352e+00, 1.4075e-02, + 2DIAGNOSTIC, 50, -5.249368679743e-01, 5.388179780959e-06, 1.8474e+00, 1.2254e-02, + 2DIAGNOSTIC, 51, -5.249309105027e-01, 2.313270876738e-06, 1.8617e+00, 1.4275e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.551688854962e-01, 1.797693134862e+308, 2.2764e+00, 4.1472e-01, + 2DIAGNOSTIC, 2, -4.553902511639e-01, 1.797693134862e+308, 2.3609e+00, 8.4489e-02, + 2DIAGNOSTIC, 3, -4.555836476564e-01, 1.797693134862e+308, 2.4580e+00, 9.7041e-02, + 2DIAGNOSTIC, 4, -4.556431743191e-01, 1.797693134862e+308, 2.5458e+00, 8.7830e-02, + 2DIAGNOSTIC, 5, -4.557952118131e-01, 1.797693134862e+308, 2.6295e+00, 8.3723e-02, + 2DIAGNOSTIC, 6, -4.563126788405e-01, 1.797693134862e+308, 2.7638e+00, 1.3425e-01, + 2DIAGNOSTIC, 7, -4.564755820125e-01, 1.797693134862e+308, 2.8581e+00, 9.4343e-02, + 2DIAGNOSTIC, 8, -4.565523180275e-01, 1.797693134862e+308, 2.9590e+00, 1.0085e-01, + 2DIAGNOSTIC, 9, -4.565931544260e-01, 1.797693134862e+308, 3.0451e+00, 8.6194e-02, + 2DIAGNOSTIC, 10, -4.566695428593e-01, 2.341388105223e-04, 3.1274e+00, 8.2251e-02, + 2DIAGNOSTIC, 11, -4.570052030656e-01, 2.074419515947e-04, 3.2242e+00, 9.6823e-02, + 2DIAGNOSTIC, 12, -4.570751887433e-01, 1.811925109988e-04, 3.3725e+00, 1.4823e-01, + 2DIAGNOSTIC, 13, -4.570806545860e-01, 1.528686621112e-04, 3.4647e+00, 9.2282e-02, + 2DIAGNOSTIC, 14, -4.570845729018e-01, 1.181793572505e-04, 3.5469e+00, 8.2200e-02, + 2DIAGNOSTIC, 15, -4.570891318962e-01, 8.349430734535e-05, 3.6428e+00, 9.5888e-02, + 2DIAGNOSTIC, 16, -4.570937325408e-01, 6.564715382383e-05, 3.7531e+00, 1.1031e-01, + 2DIAGNOSTIC, 17, -4.570947949743e-01, 4.994070347564e-05, 3.8365e+00, 8.3316e-02, + 2DIAGNOSTIC, 18, -4.570935369937e-01, 3.432367194044e-05, 3.9323e+00, 9.5873e-02, + 2DIAGNOSTIC, 19, -4.570950836918e-01, 1.882373557817e-05, 4.0307e+00, 9.8331e-02, + 2DIAGNOSTIC, 20, -4.570945587174e-01, 5.368345380473e-06, 4.1270e+00, 9.6392e-02, + 2DIAGNOSTIC, 21, -4.570923355873e-01, 2.669715357242e-06, 4.2114e+00, 8.4360e-02, + 2DIAGNOSTIC, 22, -4.570918177734e-01, 2.074956834283e-06, 4.2986e+00, 8.7209e-02, + 2DIAGNOSTIC, 23, -4.570927399761e-01, 1.646364457430e-06, 4.4105e+00, 1.1188e-01, + 2DIAGNOSTIC, 24, -4.570917543398e-01, 1.301239035127e-06, 4.5220e+00, 1.1154e-01, + 2DIAGNOSTIC, 25, -4.570905415329e-01, 1.067022702972e-06, 4.6184e+00, 9.6323e-02, + Elapsed time (stage 0): 4.7561e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.498865863069e-01, 1.797693134862e+308, 2.0175e-01, 2.0175e-01, + 2DIAGNOSTIC, 2, -7.515904605017e-01, 1.797693134862e+308, 2.0325e-01, 1.4999e-03, + 2DIAGNOSTIC, 3, -7.531005021561e-01, 1.797693134862e+308, 2.0450e-01, 1.2522e-03, + 2DIAGNOSTIC, 4, -7.554687556715e-01, 1.797693134862e+308, 2.0580e-01, 1.3020e-03, + 2DIAGNOSTIC, 5, -7.588765094363e-01, 1.797693134862e+308, 2.0700e-01, 1.1978e-03, + 2DIAGNOSTIC, 6, -7.637563460884e-01, 1.797693134862e+308, 2.0818e-01, 1.1840e-03, + 2DIAGNOSTIC, 7, -7.706124492948e-01, 1.797693134862e+308, 2.0941e-01, 1.2212e-03, + 2DIAGNOSTIC, 8, -7.802691550669e-01, 1.797693134862e+308, 2.1088e-01, 1.4782e-03, + 2DIAGNOSTIC, 9, -7.925697099560e-01, 1.797693134862e+308, 2.1235e-01, 1.4629e-03, + 2DIAGNOSTIC, 10, -8.056681192339e-01, 4.388598150356e-03, 2.1385e-01, 1.5080e-03, + 2DIAGNOSTIC, 11, -8.228511907652e-01, 5.161062315849e-03, 2.1579e-01, 1.9379e-03, + 2DIAGNOSTIC, 12, -8.465843367791e-01, 6.088753065933e-03, 2.1741e-01, 1.6210e-03, + 2DIAGNOSTIC, 13, -8.554527665977e-01, 6.587767962689e-03, 2.1955e-01, 2.1331e-03, + 2DIAGNOSTIC, 14, -8.563361555239e-01, 6.500675310265e-03, 2.2111e-01, 1.5628e-03, + 2DIAGNOSTIC, 15, -8.583548213113e-01, 5.970157170424e-03, 2.2238e-01, 1.2720e-03, + 2DIAGNOSTIC, 16, -8.588174232554e-01, 5.080306490330e-03, 2.2449e-01, 2.1069e-03, + 2DIAGNOSTIC, 17, -8.599110198831e-01, 3.994328931789e-03, 2.2632e-01, 1.8330e-03, + 2DIAGNOSTIC, 18, -8.588781112687e-01, 2.836110776373e-03, 2.2812e-01, 1.8010e-03, + 2DIAGNOSTIC, 19, -8.596298766473e-01, 1.791109694822e-03, 2.3014e-01, 2.0218e-03, + 2DIAGNOSTIC, 20, -8.594335360589e-01, 9.151947739035e-04, 2.3184e-01, 1.6990e-03, + 2DIAGNOSTIC, 21, -8.599485067249e-01, 3.274418172505e-04, 2.3401e-01, 2.1691e-03, + 2DIAGNOSTIC, 22, -8.619840955445e-01, 1.702859722015e-04, 2.3624e-01, 2.2311e-03, + 2DIAGNOSTIC, 23, -8.588236640865e-01, 9.751273987928e-05, 2.3855e-01, 2.3031e-03, + 2DIAGNOSTIC, 24, -8.590591744908e-01, 3.945687090776e-05, 2.4031e-01, 1.7600e-03, + 2DIAGNOSTIC, 25, -8.592559076167e-01, 1.296808375793e-05, 2.4226e-01, 1.9538e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.096110059304e-01, 1.797693134862e+308, 4.4864e-01, 2.0638e-01, + 2DIAGNOSTIC, 2, -7.092620282460e-01, 1.797693134862e+308, 4.5099e-01, 2.3482e-03, + 2DIAGNOSTIC, 3, -7.102869643071e-01, 1.797693134862e+308, 4.5348e-01, 2.4951e-03, + 2DIAGNOSTIC, 4, -7.112733265814e-01, 1.797693134862e+308, 4.5581e-01, 2.3291e-03, + 2DIAGNOSTIC, 5, -7.122592917156e-01, 1.797693134862e+308, 4.5848e-01, 2.6731e-03, + 2DIAGNOSTIC, 6, -7.141401805969e-01, 1.797693134862e+308, 4.6061e-01, 2.1229e-03, + 2DIAGNOSTIC, 7, -7.162551724365e-01, 1.797693134862e+308, 4.6290e-01, 2.2972e-03, + 2DIAGNOSTIC, 8, -7.208919395237e-01, 1.797693134862e+308, 4.6635e-01, 3.4492e-03, + 2DIAGNOSTIC, 9, -7.215544640468e-01, 1.797693134862e+308, 4.6843e-01, 2.0719e-03, + 2DIAGNOSTIC, 10, -7.218410182146e-01, 1.317452152350e-03, 4.7070e-01, 2.2771e-03, + 2DIAGNOSTIC, 11, -7.223041792732e-01, 1.257289998982e-03, 4.7330e-01, 2.5952e-03, + 2DIAGNOSTIC, 12, -7.237345081338e-01, 1.128435325660e-03, 4.7598e-01, 2.6851e-03, + 2DIAGNOSTIC, 13, -7.250718486237e-01, 9.867480752641e-04, 4.7831e-01, 2.3279e-03, + 2DIAGNOSTIC, 14, -7.265762021769e-01, 8.461413041059e-04, 4.8153e-01, 3.2189e-03, + 2DIAGNOSTIC, 15, -7.263195709923e-01, 6.677003473302e-04, 4.8409e-01, 2.5642e-03, + 2DIAGNOSTIC, 16, -7.263411236110e-01, 4.988050001544e-04, 4.8646e-01, 2.3689e-03, + 2DIAGNOSTIC, 17, -7.267578364499e-01, 3.600915811588e-04, 4.8925e-01, 2.7859e-03, + 2DIAGNOSTIC, 18, -7.277231710380e-01, 3.255252671989e-04, 4.9257e-01, 3.3190e-03, + 2DIAGNOSTIC, 19, -7.275422895615e-01, 2.740212893700e-04, 4.9516e-01, 2.5911e-03, + 2DIAGNOSTIC, 20, -7.274091261175e-01, 2.064001319103e-04, 4.9779e-01, 2.6262e-03, + 2DIAGNOSTIC, 21, -7.274269539020e-01, 1.355433014167e-04, 5.0004e-01, 2.2559e-03, + 2DIAGNOSTIC, 22, -7.272993227963e-01, 8.129955413822e-05, 5.0234e-01, 2.2969e-03, + 2DIAGNOSTIC, 23, -7.273417445288e-01, 4.693193393480e-05, 5.0459e-01, 2.2531e-03, + 2DIAGNOSTIC, 24, -7.277169002801e-01, 4.222573022739e-05, 5.0687e-01, 2.2740e-03, + 2DIAGNOSTIC, 25, -7.279376712847e-01, 3.366418031715e-05, 5.0945e-01, 2.5849e-03, + 2DIAGNOSTIC, 26, -7.291886610578e-01, 4.192825692807e-05, 5.1209e-01, 2.6429e-03, + 2DIAGNOSTIC, 27, -7.300655742099e-01, 6.375829435014e-05, 5.1536e-01, 3.2659e-03, + 2DIAGNOSTIC, 28, -7.298673799697e-01, 8.883109980129e-05, 5.2074e-01, 5.3771e-03, + 2DIAGNOSTIC, 29, -7.298574698447e-01, 1.017169741356e-04, 5.2301e-01, 2.2779e-03, + 2DIAGNOSTIC, 30, -7.298594137491e-01, 1.025194741630e-04, 5.2528e-01, 2.2619e-03, + 2DIAGNOSTIC, 31, -7.298640216667e-01, 9.372126444492e-05, 5.2793e-01, 2.6579e-03, + 2DIAGNOSTIC, 32, -7.298704733963e-01, 7.506130991574e-05, 5.3024e-01, 2.3088e-03, + 2DIAGNOSTIC, 33, -7.297264698488e-01, 4.945699055458e-05, 5.3258e-01, 2.3379e-03, + 2DIAGNOSTIC, 34, -7.297446984022e-01, 2.563742027854e-05, 5.3497e-01, 2.3892e-03, + 2DIAGNOSTIC, 35, -7.299295402460e-01, 5.048102631251e-06, 5.3738e-01, 2.4059e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.048316816111e-01, 1.797693134862e+308, 7.6883e-01, 2.3146e-01, + 2DIAGNOSTIC, 2, -6.062697997281e-01, 1.797693134862e+308, 7.8339e-01, 1.4555e-02, + 2DIAGNOSTIC, 3, -6.082697707418e-01, 1.797693134862e+308, 7.9711e-01, 1.3722e-02, + 2DIAGNOSTIC, 4, -6.106625604778e-01, 1.797693134862e+308, 8.1101e-01, 1.3902e-02, + 2DIAGNOSTIC, 5, -6.134418466522e-01, 1.797693134862e+308, 8.2468e-01, 1.3669e-02, + 2DIAGNOSTIC, 6, -6.166760356727e-01, 1.797693134862e+308, 8.3726e-01, 1.2573e-02, + 2DIAGNOSTIC, 7, -6.183067816074e-01, 1.797693134862e+308, 8.5645e-01, 1.9199e-02, + 2DIAGNOSTIC, 8, -6.188046650334e-01, 1.797693134862e+308, 8.7645e-01, 1.9994e-02, + 2DIAGNOSTIC, 9, -6.188689481892e-01, 1.797693134862e+308, 8.9183e-01, 1.5383e-02, + 2DIAGNOSTIC, 10, -6.190047998323e-01, 1.702367050670e-03, 9.0563e-01, 1.3803e-02, + 2DIAGNOSTIC, 11, -6.190523990209e-01, 1.294544810989e-03, 9.2050e-01, 1.4863e-02, + 2DIAGNOSTIC, 12, -6.190887348752e-01, 8.953984614078e-04, 9.3466e-01, 1.4162e-02, + 2DIAGNOSTIC, 13, -6.191924257298e-01, 5.524930512432e-04, 9.5110e-01, 1.6440e-02, + 2DIAGNOSTIC, 14, -6.193137542219e-01, 2.912967575895e-04, 9.7524e-01, 2.4144e-02, + 2DIAGNOSTIC, 15, -6.193217018864e-01, 1.224550352233e-04, 9.9457e-01, 1.9323e-02, + 2DIAGNOSTIC, 16, -6.193313416962e-01, 5.630444909693e-05, 1.0139e+00, 1.9321e-02, + 2DIAGNOSTIC, 17, -6.193323050730e-01, 3.698679789771e-05, 1.0273e+00, 1.3460e-02, + 2DIAGNOSTIC, 18, -6.193181910084e-01, 2.894402004783e-05, 1.0427e+00, 1.5345e-02, + 2DIAGNOSTIC, 19, -6.193040788164e-01, 2.034093037445e-05, 1.0563e+00, 1.3604e-02, + 2DIAGNOSTIC, 20, -6.192907354554e-01, 1.370217167394e-05, 1.0697e+00, 1.3390e-02, + 2DIAGNOSTIC, 21, -6.192939147704e-01, 7.729161098820e-06, 1.0845e+00, 1.4834e-02, + 2DIAGNOSTIC, 22, -6.192839863536e-01, 2.236230994206e-06, 1.0982e+00, 1.3706e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.244461753779e-01, 1.797693134862e+308, 1.5387e+00, 4.4051e-01, + 2DIAGNOSTIC, 2, -5.249489792233e-01, 1.797693134862e+308, 1.6335e+00, 9.4747e-02, + 2DIAGNOSTIC, 3, -5.253273751388e-01, 1.797693134862e+308, 1.7307e+00, 9.7191e-02, + 2DIAGNOSTIC, 4, -5.257822301107e-01, 1.797693134862e+308, 1.8291e+00, 9.8471e-02, + 2DIAGNOSTIC, 5, -5.265181796818e-01, 1.797693134862e+308, 1.9398e+00, 1.1064e-01, + 2DIAGNOSTIC, 6, -5.280345036285e-01, 1.797693134862e+308, 2.0663e+00, 1.2651e-01, + 2DIAGNOSTIC, 7, -5.286283217984e-01, 1.797693134862e+308, 2.2189e+00, 1.5264e-01, + 2DIAGNOSTIC, 8, -5.286971559410e-01, 1.797693134862e+308, 2.3151e+00, 9.6180e-02, + 2DIAGNOSTIC, 9, -5.289232450690e-01, 1.797693134862e+308, 2.4104e+00, 9.5233e-02, + 2DIAGNOSTIC, 10, -5.292741191669e-01, 6.634830830234e-04, 2.5058e+00, 9.5470e-02, + 2DIAGNOSTIC, 11, -5.294390691767e-01, 5.545871203922e-04, 2.6024e+00, 9.6532e-02, + 2DIAGNOSTIC, 12, -5.297864017605e-01, 4.523314890976e-04, 2.7129e+00, 1.1059e-01, + 2DIAGNOSTIC, 13, -5.302912643961e-01, 3.624350953134e-04, 2.9199e+00, 2.0701e-01, + 2DIAGNOSTIC, 14, -5.303060142920e-01, 2.705792530508e-04, 3.0142e+00, 9.4228e-02, + 2DIAGNOSTIC, 15, -5.303350366176e-01, 1.928624244880e-04, 3.0996e+00, 8.5434e-02, + 2DIAGNOSTIC, 16, -5.303780516051e-01, 1.595056824504e-04, 3.1849e+00, 8.5261e-02, + 2DIAGNOSTIC, 17, -5.304365081653e-01, 1.361505878012e-04, 3.2717e+00, 8.6847e-02, + 2DIAGNOSTIC, 18, -5.305095876354e-01, 1.069358348629e-04, 3.3626e+00, 9.0917e-02, + 2DIAGNOSTIC, 19, -5.306310207022e-01, 8.074716706632e-05, 3.4489e+00, 8.6274e-02, + 2DIAGNOSTIC, 20, -5.307897939016e-01, 6.368314718275e-05, 3.5364e+00, 8.7482e-02, + 2DIAGNOSTIC, 21, -5.310203421525e-01, 5.242076449766e-05, 3.6228e+00, 8.6441e-02, + 2DIAGNOSTIC, 22, -5.317415195373e-01, 6.309111856321e-05, 3.7137e+00, 9.0910e-02, + 2DIAGNOSTIC, 23, -5.320041892915e-01, 8.460215135880e-05, 3.8232e+00, 1.0942e-01, + 2DIAGNOSTIC, 24, -5.321585161767e-01, 1.003541301869e-04, 4.0014e+00, 1.7825e-01, + 2DIAGNOSTIC, 25, -5.321649971252e-01, 1.064591889050e-04, 4.1112e+00, 1.0975e-01, + 2DIAGNOSTIC, 26, -5.321776722742e-01, 1.033501897954e-04, 4.2229e+00, 1.1170e-01, + 2DIAGNOSTIC, 27, -5.321926943722e-01, 9.212070866154e-05, 4.3331e+00, 1.1023e-01, + 2DIAGNOSTIC, 28, -5.322001267468e-01, 7.455520892138e-05, 4.4281e+00, 9.4985e-02, + 2DIAGNOSTIC, 29, -5.322217258603e-01, 5.404207463938e-05, 4.5217e+00, 9.3571e-02, + 2DIAGNOSTIC, 30, -5.322594462663e-01, 3.350706851777e-05, 4.6164e+00, 9.4782e-02, + 2DIAGNOSTIC, 31, -5.322932006090e-01, 1.552877591426e-05, 4.7094e+00, 9.2955e-02, + 2DIAGNOSTIC, 32, -5.323620180459e-01, 1.044381546219e-05, 4.8055e+00, 9.6157e-02, + 2DIAGNOSTIC, 33, -5.324383290778e-01, 1.019376741562e-05, 4.8969e+00, 9.1370e-02, + 2DIAGNOSTIC, 34, -5.326814432544e-01, 1.533195116465e-05, 4.9824e+00, 8.5439e-02, + 2DIAGNOSTIC, 35, -5.335872542983e-01, 3.268942620364e-05, 5.1345e+00, 1.5210e-01, + 2DIAGNOSTIC, 36, -5.336315849549e-01, 4.656605390583e-05, 5.2191e+00, 8.4683e-02, + 2DIAGNOSTIC, 37, -5.336802454012e-01, 5.644746822600e-05, 5.3049e+00, 8.5727e-02, + 2DIAGNOSTIC, 38, -5.337351330499e-01, 6.155802204890e-05, 5.3904e+00, 8.5544e-02, + 2DIAGNOSTIC, 39, -5.339725026756e-01, 6.407077599473e-05, 5.4760e+00, 8.5586e-02, + 2DIAGNOSTIC, 40, -5.343559940739e-01, 6.578881224946e-05, 5.5994e+00, 1.2340e-01, + 2DIAGNOSTIC, 41, -5.344279302168e-01, 6.248902567912e-05, 5.7238e+00, 1.2444e-01, + 2DIAGNOSTIC, 42, -5.344761958090e-01, 5.521306970623e-05, 5.8297e+00, 1.0582e-01, + 2DIAGNOSTIC, 43, -5.344955577952e-01, 4.437203195891e-05, 5.9291e+00, 9.9489e-02, + 2DIAGNOSTIC, 44, -5.345264694299e-01, 3.283644431189e-05, 6.0140e+00, 8.4873e-02, + 2DIAGNOSTIC, 45, -5.347933600752e-01, 3.260531975883e-05, 6.0997e+00, 8.5696e-02, + 2DIAGNOSTIC, 46, -5.349648307640e-01, 3.176548015980e-05, 6.1969e+00, 9.7216e-02, + 2DIAGNOSTIC, 47, -5.349710011039e-01, 2.867098846007e-05, 6.2829e+00, 8.6010e-02, + 2DIAGNOSTIC, 48, -5.349949217137e-01, 2.395542905042e-05, 6.3745e+00, 9.1576e-02, + 2DIAGNOSTIC, 49, -5.350503009819e-01, 2.030212494629e-05, 6.4675e+00, 9.2941e-02, + 2DIAGNOSTIC, 50, -5.351262491575e-01, 1.974479077134e-05, 6.5639e+00, 9.6422e-02, + 2DIAGNOSTIC, 51, -5.356132424263e-01, 2.317721008941e-05, 6.7331e+00, 1.6922e-01, + 2DIAGNOSTIC, 52, -5.356540933873e-01, 2.513959161855e-05, 6.8411e+00, 1.0800e-01, + 2DIAGNOSTIC, 53, -5.356676392239e-01, 2.511122887161e-05, 6.9359e+00, 9.4789e-02, + 2DIAGNOSTIC, 54, -5.357075347111e-01, 2.344456918433e-05, 7.0230e+00, 8.7164e-02, + 2DIAGNOSTIC, 55, -5.357576862560e-01, 2.264633955094e-05, 7.1071e+00, 8.4072e-02, + 2DIAGNOSTIC, 56, -5.357870537844e-01, 2.159376712363e-05, 7.2545e+00, 1.4738e-01, + 2DIAGNOSTIC, 57, -5.358179634812e-01, 1.889720263949e-05, 7.3657e+00, 1.1124e-01, + 2DIAGNOSTIC, 58, -5.358389553077e-01, 1.501027254155e-05, 7.4631e+00, 9.7363e-02, + 2DIAGNOSTIC, 59, -5.358574452962e-01, 1.056811247755e-05, 7.5593e+00, 9.6161e-02, + 2DIAGNOSTIC, 60, -5.359387453445e-01, 6.584645135796e-06, 7.6565e+00, 9.7249e-02, + 2DIAGNOSTIC, 61, -5.361441761602e-01, 8.186140614652e-06, 7.8142e+00, 1.5766e-01, + 2DIAGNOSTIC, 62, -5.361490492462e-01, 9.354316600707e-06, 7.9290e+00, 1.1485e-01, + 2DIAGNOSTIC, 63, -5.361517249881e-01, 9.797887676372e-06, 8.0578e+00, 1.2882e-01, + 2DIAGNOSTIC, 64, -5.361526728317e-01, 9.690922598671e-06, 8.1726e+00, 1.1472e-01, + 2DIAGNOSTIC, 65, -5.361603822687e-01, 9.158799004406e-06, 8.3198e+00, 1.4719e-01, + 2DIAGNOSTIC, 66, -5.361607915236e-01, 8.014286780246e-06, 8.4300e+00, 1.1023e-01, + 2DIAGNOSTIC, 67, -5.361578077354e-01, 6.402614775004e-06, 8.5234e+00, 9.3417e-02, + 2DIAGNOSTIC, 68, -5.361549512923e-01, 4.441003619193e-06, 8.6265e+00, 1.0313e-01, + 2DIAGNOSTIC, 69, -5.361569039453e-01, 2.313724229935e-06, 8.7226e+00, 9.6082e-02, + Elapsed time (stage 1): 8.8527e+00 + + +Total elapsed time: 1.3611e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:29:40 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:29:40 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x557c430a54f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.592, 68.3168, -110.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557c430aafa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb1a000e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x557c430a6850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.592, 68.3168, -110.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557c430a3f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb19c94f010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x557c430bdb80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.592, 68.3168, -110.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557c430aa550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb199290010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x557c430c2d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.592, 68.3168, -110.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557c430c0c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb195bd1010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x557c430c4f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.592, 68.3168, -110.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557c430c33a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb192512010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x557c430c5540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.592, 68.3168, -110.188] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x557c430c54d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fb18ee53010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.702772378663e-01, 1.797693134862e+308, 2.0430e-01, 2.0430e-01, + 2DIAGNOSTIC, 2, -4.732091448497e-01, 1.797693134862e+308, 2.0634e-01, 2.0401e-03, + 2DIAGNOSTIC, 3, -4.783485987876e-01, 1.797693134862e+308, 2.0838e-01, 2.0480e-03, + 2DIAGNOSTIC, 4, -4.880445025246e-01, 1.797693134862e+308, 2.1036e-01, 1.9741e-03, + 2DIAGNOSTIC, 5, -5.056967855263e-01, 1.797693134862e+308, 2.1240e-01, 2.0380e-03, + 2DIAGNOSTIC, 6, -5.405091974116e-01, 1.797693134862e+308, 2.1443e-01, 2.0320e-03, + 2DIAGNOSTIC, 7, -5.866611823545e-01, 1.797693134862e+308, 2.1652e-01, 2.0921e-03, + 2DIAGNOSTIC, 8, -5.871352274201e-01, 1.797693134862e+308, 2.1836e-01, 1.8361e-03, + 2DIAGNOSTIC, 9, -5.873774936014e-01, 1.797693134862e+308, 2.2018e-01, 1.8198e-03, + 2DIAGNOSTIC, 10, -5.880627213217e-01, 1.852227838754e-02, 2.2303e-01, 2.8541e-03, + 2DIAGNOSTIC, 11, -5.883621219655e-01, 1.574235537987e-02, 2.2526e-01, 2.2280e-03, + 2DIAGNOSTIC, 12, -5.883990572550e-01, 1.216890213387e-02, 2.2712e-01, 1.8611e-03, + 2DIAGNOSTIC, 13, -5.883020528463e-01, 8.315442410945e-03, 2.2900e-01, 1.8799e-03, + 2DIAGNOSTIC, 14, -5.881200902812e-01, 4.681213387929e-03, 2.3160e-01, 2.5959e-03, + 2DIAGNOSTIC, 15, -5.881315901051e-01, 1.733815286355e-03, 2.3350e-01, 1.9011e-03, + 2DIAGNOSTIC, 16, -5.881447244949e-01, 9.840746385630e-05, 2.3538e-01, 1.8799e-03, + 2DIAGNOSTIC, 17, -5.881539595387e-01, 5.049428073894e-05, 2.4153e-01, 6.1541e-03, + 2DIAGNOSTIC, 18, -5.881539595112e-01, 1.744295153566e-05, 2.4770e-01, 6.1681e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.880595606248e-01, 1.797693134862e+308, 4.8018e-01, 2.3248e-01, + 2DIAGNOSTIC, 2, -4.889726714966e-01, 1.797693134862e+308, 4.9301e-01, 1.2829e-02, + 2DIAGNOSTIC, 3, -4.897514347456e-01, 1.797693134862e+308, 5.0656e-01, 1.3552e-02, + 2DIAGNOSTIC, 4, -4.902751890744e-01, 1.797693134862e+308, 5.2008e-01, 1.3518e-02, + 2DIAGNOSTIC, 5, -4.903369982019e-01, 1.797693134862e+308, 5.3420e-01, 1.4119e-02, + 2DIAGNOSTIC, 6, -4.905134639109e-01, 1.797693134862e+308, 5.4845e-01, 1.4251e-02, + 2DIAGNOSTIC, 7, -4.908020739741e-01, 1.797693134862e+308, 5.6928e-01, 2.0831e-02, + 2DIAGNOSTIC, 8, -4.909563748440e-01, 1.797693134862e+308, 5.8411e-01, 1.4832e-02, + 2DIAGNOSTIC, 9, -4.909872825510e-01, 1.797693134862e+308, 5.9737e-01, 1.3262e-02, + 2DIAGNOSTIC, 10, -4.910420768999e-01, 3.431668758697e-04, 6.1062e-01, 1.3248e-02, + 2DIAGNOSTIC, 11, -4.913654390549e-01, 2.325059046310e-04, 6.2486e-01, 1.4238e-02, + 2DIAGNOSTIC, 12, -4.913163605047e-01, 1.600645146065e-04, 6.5331e-01, 2.8450e-02, + 2DIAGNOSTIC, 13, -4.913269516274e-01, 1.193627117207e-04, 6.6557e-01, 1.2258e-02, + 2DIAGNOSTIC, 14, -4.913173439217e-01, 9.548371993560e-05, 6.7760e-01, 1.2035e-02, + 2DIAGNOSTIC, 15, -4.913204360625e-01, 6.872541470584e-05, 6.8941e-01, 1.1809e-02, + 2DIAGNOSTIC, 16, -4.913247235655e-01, 4.534092816939e-05, 7.0116e-01, 1.1747e-02, + 2DIAGNOSTIC, 17, -4.913415996862e-01, 3.099940393278e-05, 7.1527e-01, 1.4110e-02, + 2DIAGNOSTIC, 18, -4.913693998624e-01, 2.157423872250e-05, 7.2915e-01, 1.3885e-02, + 2DIAGNOSTIC, 19, -4.913736469096e-01, 1.241300158491e-05, 7.4220e-01, 1.3045e-02, + 2DIAGNOSTIC, 20, -4.913764860579e-01, 4.572793325157e-06, 7.5548e-01, 1.3281e-02, + 2DIAGNOSTIC, 21, -4.913906872803e-01, 6.556729746122e-06, 7.6896e-01, 1.3483e-02, + 2DIAGNOSTIC, 22, -4.915012647681e-01, 9.479656326368e-06, 7.8259e-01, 1.3632e-02, + 2DIAGNOSTIC, 23, -4.915299825019e-01, 1.230786023741e-05, 7.9836e-01, 1.5769e-02, + 2DIAGNOSTIC, 24, -4.915416301416e-01, 1.394452974435e-05, 8.1431e-01, 1.5943e-02, + 2DIAGNOSTIC, 25, -4.915612690559e-01, 1.484339674137e-05, 8.3012e-01, 1.5810e-02, + 2DIAGNOSTIC, 26, -4.915947415793e-01, 1.522197790951e-05, 8.7856e-01, 4.8444e-02, + 2DIAGNOSTIC, 27, -4.915947343853e-01, 1.454598441710e-05, 8.9262e-01, 1.4056e-02, + 2DIAGNOSTIC, 28, -4.915947436163e-01, 1.323099809655e-05, 9.0498e-01, 1.2361e-02, + 2DIAGNOSTIC, 29, -4.915947592216e-01, 1.099092390594e-05, 9.1828e-01, 1.3301e-02, + 2DIAGNOSTIC, 30, -4.915947855907e-01, 8.037512540832e-06, 9.3224e-01, 1.3961e-02, + 2DIAGNOSTIC, 31, -4.915948301257e-01, 4.819395599050e-06, 9.4713e-01, 1.4889e-02, + 2DIAGNOSTIC, 32, -4.915949055295e-01, 3.435800138722e-06, 9.6127e-01, 1.4146e-02, + 2DIAGNOSTIC, 33, -4.915950326517e-01, 2.418383674728e-06, 9.7546e-01, 1.4187e-02, + 2DIAGNOSTIC, 34, -4.915952459851e-01, 1.522028838533e-06, 9.9041e-01, 1.4948e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.130467680466e-01, 1.797693134862e+308, 1.4107e+00, 4.2030e-01, + 2DIAGNOSTIC, 2, -4.131376638808e-01, 1.797693134862e+308, 1.5232e+00, 1.1254e-01, + 2DIAGNOSTIC, 3, -4.131821453465e-01, 1.797693134862e+308, 1.6159e+00, 9.2685e-02, + 2DIAGNOSTIC, 4, -4.132816935489e-01, 1.797693134862e+308, 1.7094e+00, 9.3468e-02, + 2DIAGNOSTIC, 5, -4.134144378542e-01, 1.797693134862e+308, 1.8022e+00, 9.2835e-02, + 2DIAGNOSTIC, 6, -4.139574227796e-01, 1.797693134862e+308, 1.9210e+00, 1.1873e-01, + 2DIAGNOSTIC, 7, -4.140623688462e-01, 1.797693134862e+308, 2.0792e+00, 1.5824e-01, + 2DIAGNOSTIC, 8, -4.140633094443e-01, 1.797693134862e+308, 2.1724e+00, 9.3178e-02, + 2DIAGNOSTIC, 9, -4.140649773346e-01, 1.797693134862e+308, 2.2788e+00, 1.0644e-01, + 2DIAGNOSTIC, 10, -4.140641074002e-01, 2.024663894364e-04, 2.4254e+00, 1.4657e-01, + 2DIAGNOSTIC, 11, -4.140637592827e-01, 1.632116982966e-04, 2.5329e+00, 1.0755e-01, + 2DIAGNOSTIC, 12, -4.140627373079e-01, 1.211797033372e-04, 2.6520e+00, 1.1904e-01, + 2DIAGNOSTIC, 13, -4.140627975400e-01, 7.765219295054e-05, 2.7593e+00, 1.0734e-01, + 2DIAGNOSTIC, 14, -4.140604740749e-01, 3.850380357935e-05, 2.8791e+00, 1.1977e-01, + 2DIAGNOSTIC, 15, -4.140599249791e-01, 6.673154503187e-06, 2.9862e+00, 1.0709e-01, + 2DIAGNOSTIC, 16, -4.140570138305e-01, 1.463382243258e-06, 3.0815e+00, 9.5317e-02, + 2DIAGNOSTIC, 17, -4.140568433556e-01, 1.149841249930e-06, 3.1746e+00, 9.3100e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.591219825052e-01, 1.797693134862e+308, 4.3969e+00, 1.2223e+00, + 2DIAGNOSTIC, 2, -3.592807614451e-01, 1.797693134862e+308, 5.0457e+00, 6.4882e-01, + 2DIAGNOSTIC, 3, -3.592787857877e-01, 1.797693134862e+308, 5.9343e+00, 8.8861e-01, + 2DIAGNOSTIC, 4, -3.592794270416e-01, 1.797693134862e+308, 6.5721e+00, 6.3777e-01, + 2DIAGNOSTIC, 5, -3.592794002987e-01, 1.797693134862e+308, 7.3977e+00, 8.2557e-01, + 2DIAGNOSTIC, 6, -3.592793068619e-01, 1.797693134862e+308, 7.9474e+00, 5.4970e-01, + 2DIAGNOSTIC, 7, -3.592791011785e-01, 1.797693134862e+308, 8.4926e+00, 5.4519e-01, + 2DIAGNOSTIC, 8, -3.592789277932e-01, 1.797693134862e+308, 9.1043e+00, 6.1171e-01, + 2DIAGNOSTIC, 9, -3.592788712304e-01, 1.797693134862e+308, 9.6717e+00, 5.6738e-01, + 2DIAGNOSTIC, 10, -3.592786882497e-01, 1.544201781695e-05, 1.0148e+01, 4.7582e-01, + 2DIAGNOSTIC, 11, -3.592785528708e-01, 2.680587095197e-06, 1.0674e+01, 5.2608e-01, + 2DIAGNOSTIC, 12, -3.592787504602e-01, 2.549994347900e-06, 1.1222e+01, 5.4867e-01, + 2DIAGNOSTIC, 13, -3.592788319058e-01, 2.331719968079e-06, 1.1834e+01, 6.1181e-01, + 2DIAGNOSTIC, 14, -3.592786750751e-01, 2.182270206083e-06, 1.2450e+01, 6.1548e-01, + 2DIAGNOSTIC, 15, -3.592787248454e-01, 2.062692880431e-06, 1.3202e+01, 7.5247e-01, + 2DIAGNOSTIC, 16, -3.592788097503e-01, 1.963117022427e-06, 1.4002e+01, 7.9979e-01, + 2DIAGNOSTIC, 17, -3.592786982732e-01, 1.862515547651e-06, 1.4617e+01, 6.1484e-01, + 2DIAGNOSTIC, 18, -3.592785829045e-01, 1.761237074113e-06, 1.5243e+01, 6.2681e-01, + 2DIAGNOSTIC, 19, -3.592784721448e-01, 1.664724793217e-06, 1.5860e+01, 6.1608e-01, + 2DIAGNOSTIC, 20, -3.592783643175e-01, 1.567522379918e-06, 1.6409e+01, 5.4965e-01, + 2DIAGNOSTIC, 21, -3.592782691102e-01, 1.472711749273e-06, 1.6953e+01, 5.4341e-01, + 2DIAGNOSTIC, 22, -3.592781953802e-01, 1.394838083778e-06, 1.7575e+01, 6.2258e-01, + 2DIAGNOSTIC, 23, -3.592782577006e-01, 1.333752581399e-06, 1.8179e+01, 6.0379e-01, + 2DIAGNOSTIC, 24, -3.592783199051e-01, 1.279137825431e-06, 1.8668e+01, 4.8884e-01, + 2DIAGNOSTIC, 25, -3.592781727598e-01, 1.229991165856e-06, 1.9225e+01, 5.5689e-01, + 2DIAGNOSTIC, 26, -3.592782233921e-01, 1.192990481916e-06, 1.9839e+01, 6.1457e-01, + 2DIAGNOSTIC, 27, -3.592787152173e-01, 1.172727054390e-06, 2.0532e+01, 6.9307e-01, + 2DIAGNOSTIC, 28, -3.592786341797e-01, 1.148407691651e-06, 2.1174e+01, 6.4214e-01, + 2DIAGNOSTIC, 29, -3.592785371062e-01, 1.119180277766e-06, 2.1719e+01, 5.4500e-01, + 2DIAGNOSTIC, 30, -3.592784601253e-01, 1.085310930217e-06, 2.2271e+01, 5.5145e-01, + 2DIAGNOSTIC, 31, -3.592782911299e-01, 1.044558394357e-06, 2.2855e+01, 5.8358e-01, + 2DIAGNOSTIC, 32, -3.592783743607e-01, 1.004612675624e-06, 2.3383e+01, 5.2890e-01, + Elapsed time (stage 0): 2.3725e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.703322423287e-01, 1.797693134862e+308, 1.8017e-01, 1.8017e-01, + 2DIAGNOSTIC, 2, -5.715704232122e-01, 1.797693134862e+308, 1.8223e-01, 2.0580e-03, + 2DIAGNOSTIC, 3, -5.734979148130e-01, 1.797693134862e+308, 1.8423e-01, 1.9948e-03, + 2DIAGNOSTIC, 4, -5.757209827478e-01, 1.797693134862e+308, 1.8627e-01, 2.0452e-03, + 2DIAGNOSTIC, 5, -5.774087580536e-01, 1.797693134862e+308, 1.8831e-01, 2.0359e-03, + 2DIAGNOSTIC, 6, -5.789737623185e-01, 1.797693134862e+308, 1.9041e-01, 2.0990e-03, + 2DIAGNOSTIC, 7, -5.801674378703e-01, 1.797693134862e+308, 1.9306e-01, 2.6550e-03, + 2DIAGNOSTIC, 8, -5.802552657680e-01, 1.797693134862e+308, 1.9564e-01, 2.5811e-03, + 2DIAGNOSTIC, 9, -5.803738879912e-01, 1.797693134862e+308, 1.9792e-01, 2.2731e-03, + 2DIAGNOSTIC, 10, -5.806715054398e-01, 1.240178481926e-03, 2.0015e-01, 2.2330e-03, + 2DIAGNOSTIC, 11, -5.808959391138e-01, 9.153135552760e-04, 2.0232e-01, 2.1720e-03, + 2DIAGNOSTIC, 12, -5.810211036225e-01, 6.178776134433e-04, 2.0496e-01, 2.6381e-03, + 2DIAGNOSTIC, 13, -5.810540412375e-01, 3.843319243386e-04, 2.0714e-01, 2.1868e-03, + 2DIAGNOSTIC, 14, -5.810717430887e-01, 2.280156313662e-04, 2.1026e-01, 3.1192e-03, + 2DIAGNOSTIC, 15, -5.810993102418e-01, 1.271494175121e-04, 2.1451e-01, 4.2500e-03, + 2DIAGNOSTIC, 16, -5.811059049095e-01, 7.462350812165e-05, 2.1736e-01, 2.8501e-03, + 2DIAGNOSTIC, 17, -5.811174110620e-01, 5.647426035995e-05, 2.1970e-01, 2.3351e-03, + 2DIAGNOSTIC, 18, -5.811413221509e-01, 3.843648161712e-05, 2.2220e-01, 2.5010e-03, + 2DIAGNOSTIC, 19, -5.812478704772e-01, 2.460361055603e-05, 2.2628e-01, 4.0810e-03, + 2DIAGNOSTIC, 20, -5.812486956440e-01, 1.716998952483e-05, 2.2910e-01, 2.8229e-03, + 2DIAGNOSTIC, 21, -5.812490555703e-01, 1.421456336233e-05, 2.3145e-01, 2.3489e-03, + 2DIAGNOSTIC, 22, -5.812498385572e-01, 1.317842058112e-05, 2.3383e-01, 2.3780e-03, + 2DIAGNOSTIC, 23, -5.812524441555e-01, 1.187414618863e-05, 2.3618e-01, 2.3460e-03, + 2DIAGNOSTIC, 24, -5.812568775638e-01, 1.009794802556e-05, 2.3858e-01, 2.4030e-03, + 2DIAGNOSTIC, 25, -5.812633714376e-01, 8.306161918076e-06, 2.4103e-01, 2.4540e-03, + 2DIAGNOSTIC, 26, -5.812728729335e-01, 6.325199247273e-06, 2.4595e-01, 4.9109e-03, + 2DIAGNOSTIC, 27, -5.812728956873e-01, 4.229121833184e-06, 2.4839e-01, 2.4469e-03, + 2DIAGNOSTIC, 28, -5.812729214775e-01, 2.364427946301e-06, 2.5062e-01, 2.2309e-03, + 2DIAGNOSTIC, 29, -5.812730268110e-01, 2.316715766525e-06, 2.5287e-01, 2.2511e-03, + 2DIAGNOSTIC, 30, -5.812733663119e-01, 2.174170695951e-06, 2.5506e-01, 2.1901e-03, + 2DIAGNOSTIC, 31, -5.812742973404e-01, 1.954330942529e-06, 2.5740e-01, 2.3348e-03, + 2DIAGNOSTIC, 32, -5.812762973858e-01, 1.703612707037e-06, 2.5960e-01, 2.1999e-03, + 2DIAGNOSTIC, 33, -5.812795916202e-01, 1.489643426673e-06, 2.6186e-01, 2.2619e-03, + 2DIAGNOSTIC, 34, -5.812847180106e-01, 1.374528035308e-06, 2.6438e-01, 2.5198e-03, + 2DIAGNOSTIC, 35, -5.812858738922e-01, 1.326630156763e-06, 2.6717e-01, 2.7919e-03, + 2DIAGNOSTIC, 36, -5.812890070018e-01, 1.414646591289e-06, 2.7037e-01, 3.1960e-03, + 2DIAGNOSTIC, 37, -5.812896945404e-01, 1.456476777972e-06, 2.7271e-01, 2.3420e-03, + 2DIAGNOSTIC, 38, -5.812922566629e-01, 1.472433591776e-06, 2.7525e-01, 2.5380e-03, + 2DIAGNOSTIC, 39, -5.813081114967e-01, 1.626632293850e-06, 2.7741e-01, 2.1610e-03, + 2DIAGNOSTIC, 40, -5.813146164535e-01, 1.774717917472e-06, 2.7951e-01, 2.0959e-03, + 2DIAGNOSTIC, 41, -5.813174324794e-01, 1.867653580651e-06, 2.8331e-01, 3.8080e-03, + 2DIAGNOSTIC, 42, -5.813175369818e-01, 1.879041959352e-06, 2.8580e-01, 2.4879e-03, + 2DIAGNOSTIC, 43, -5.813175604426e-01, 1.820097324311e-06, 2.8806e-01, 2.2621e-03, + 2DIAGNOSTIC, 44, -5.813176005658e-01, 1.715555127634e-06, 2.9029e-01, 2.2252e-03, + 2DIAGNOSTIC, 45, -5.813177829392e-01, 1.533048820709e-06, 2.9253e-01, 2.2390e-03, + 2DIAGNOSTIC, 46, -5.813182999456e-01, 1.320481698902e-06, 2.9477e-01, 2.2392e-03, + 2DIAGNOSTIC, 47, -5.813193349627e-01, 1.076909041057e-06, 2.9702e-01, 2.2540e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.843828955916e-01, 1.797693134862e+308, 4.9755e-01, 2.0053e-01, + 2DIAGNOSTIC, 2, -4.854355601598e-01, 1.797693134862e+308, 5.1358e-01, 1.6030e-02, + 2DIAGNOSTIC, 3, -4.865393794375e-01, 1.797693134862e+308, 5.2808e-01, 1.4500e-02, + 2DIAGNOSTIC, 4, -4.873913595006e-01, 1.797693134862e+308, 5.4213e-01, 1.4046e-02, + 2DIAGNOSTIC, 5, -4.881059304964e-01, 1.797693134862e+308, 5.5615e-01, 1.4024e-02, + 2DIAGNOSTIC, 6, -4.888399744748e-01, 1.797693134862e+308, 5.7223e-01, 1.6078e-02, + 2DIAGNOSTIC, 7, -4.890639985737e-01, 1.797693134862e+308, 5.9195e-01, 1.9717e-02, + 2DIAGNOSTIC, 8, -4.891852952714e-01, 1.797693134862e+308, 6.0787e-01, 1.5920e-02, + 2DIAGNOSTIC, 9, -4.892400563925e-01, 1.797693134862e+308, 6.2302e-01, 1.5153e-02, + 2DIAGNOSTIC, 10, -4.893642270859e-01, 6.479204073633e-04, 6.3908e-01, 1.6066e-02, + 2DIAGNOSTIC, 11, -4.895979347188e-01, 4.513625305509e-04, 6.5523e-01, 1.6143e-02, + 2DIAGNOSTIC, 12, -4.899832061130e-01, 3.162051576886e-04, 6.7323e-01, 1.8003e-02, + 2DIAGNOSTIC, 13, -4.900905426846e-01, 2.272551027590e-04, 6.8742e-01, 1.4190e-02, + 2DIAGNOSTIC, 14, -4.901428389129e-01, 1.680459346239e-04, 7.0153e-01, 1.4111e-02, + 2DIAGNOSTIC, 15, -4.901716210840e-01, 1.299370096803e-04, 7.1652e-01, 1.4993e-02, + 2DIAGNOSTIC, 16, -4.901733017174e-01, 1.113317478088e-04, 7.3519e-01, 1.8665e-02, + 2DIAGNOSTIC, 17, -4.901717313478e-01, 9.221426900736e-05, 7.5377e-01, 1.8583e-02, + 2DIAGNOSTIC, 18, -4.901754740451e-01, 7.094852653459e-05, 7.6872e-01, 1.4944e-02, + 2DIAGNOSTIC, 19, -4.901986551515e-01, 4.802661302705e-05, 7.8540e-01, 1.6678e-02, + 2DIAGNOSTIC, 20, -4.901953800869e-01, 2.656284257573e-05, 8.0352e-01, 1.8122e-02, + 2DIAGNOSTIC, 21, -4.901975459946e-01, 1.111300220769e-05, 8.1811e-01, 1.4592e-02, + 2DIAGNOSTIC, 22, -4.901893318735e-01, 6.091024630173e-06, 8.3493e-01, 1.6824e-02, + 2DIAGNOSTIC, 23, -4.901937765637e-01, 3.869824208136e-06, 8.5008e-01, 1.5148e-02, + 2DIAGNOSTIC, 24, -4.901950398971e-01, 2.863784118387e-06, 8.6537e-01, 1.5292e-02, + 2DIAGNOSTIC, 25, -4.903130215476e-01, 5.201047581845e-06, 8.8381e-01, 1.8432e-02, + 2DIAGNOSTIC, 26, -4.903609501892e-01, 8.034486315034e-06, 9.0068e-01, 1.6872e-02, + 2DIAGNOSTIC, 27, -4.903721952609e-01, 1.023098289148e-05, 9.1953e-01, 1.8854e-02, + 2DIAGNOSTIC, 28, -4.903807198886e-01, 1.170144127279e-05, 9.3441e-01, 1.4883e-02, + 2DIAGNOSTIC, 29, -4.904061759790e-01, 1.305032751281e-05, 9.5323e-01, 1.8813e-02, + 2DIAGNOSTIC, 30, -4.904340697098e-01, 1.360330101664e-05, 9.6974e-01, 1.6511e-02, + 2DIAGNOSTIC, 31, -4.904307971794e-01, 1.288773658931e-05, 9.9149e-01, 2.1748e-02, + 2DIAGNOSTIC, 32, -4.904308183250e-01, 1.098550927265e-05, 1.0098e+00, 1.8298e-02, + 2DIAGNOSTIC, 33, -4.904308228843e-01, 8.370107091558e-06, 1.0289e+00, 1.9165e-02, + 2DIAGNOSTIC, 34, -4.904308236356e-01, 5.172153689639e-06, 1.0795e+00, 5.0532e-02, + 2DIAGNOSTIC, 35, -4.904308236356e-01, 3.684541366109e-06, 1.1019e+00, 2.2411e-02, + 2DIAGNOSTIC, 36, -4.904308236356e-01, 2.791191772704e-06, 1.1182e+00, 1.6344e-02, + 2DIAGNOSTIC, 37, -4.904308236356e-01, 1.949563446835e-06, 1.1343e+00, 1.6108e-02, + 2DIAGNOSTIC, 38, -4.904308236356e-01, 1.172045956677e-06, 1.1505e+00, 1.6123e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.125424193108e-01, 1.797693134862e+308, 1.5338e+00, 3.8338e-01, + 2DIAGNOSTIC, 2, -4.130495571198e-01, 1.797693134862e+308, 1.6357e+00, 1.0183e-01, + 2DIAGNOSTIC, 3, -4.134358620328e-01, 1.797693134862e+308, 1.7375e+00, 1.0179e-01, + 2DIAGNOSTIC, 4, -4.136403734259e-01, 1.797693134862e+308, 1.8400e+00, 1.0250e-01, + 2DIAGNOSTIC, 5, -4.138495649987e-01, 1.797693134862e+308, 1.9583e+00, 1.1830e-01, + 2DIAGNOSTIC, 6, -4.140024368772e-01, 1.797693134862e+308, 2.1442e+00, 1.8589e-01, + 2DIAGNOSTIC, 7, -4.140093170615e-01, 1.797693134862e+308, 2.2429e+00, 9.8769e-02, + 2DIAGNOSTIC, 8, -4.140218476539e-01, 1.797693134862e+308, 2.3307e+00, 8.7778e-02, + 2DIAGNOSTIC, 9, -4.140376938514e-01, 1.797693134862e+308, 2.4175e+00, 8.6798e-02, + 2DIAGNOSTIC, 10, -4.140558581753e-01, 2.083084524077e-04, 2.5081e+00, 9.0632e-02, + 2DIAGNOSTIC, 11, -4.140776046956e-01, 1.234421207575e-04, 2.5957e+00, 8.7609e-02, + 2DIAGNOSTIC, 12, -4.141007327605e-01, 7.193040900115e-05, 2.6866e+00, 9.0829e-02, + 2DIAGNOSTIC, 13, -4.141345551236e-01, 4.422754632830e-05, 2.7774e+00, 9.0817e-02, + 2DIAGNOSTIC, 14, -4.141933769681e-01, 2.937624935927e-05, 2.8902e+00, 1.1282e-01, + 2DIAGNOSTIC, 15, -4.142363113566e-01, 2.532720041991e-05, 2.9915e+00, 1.0133e-01, + 2DIAGNOSTIC, 16, -4.142827380485e-01, 2.819896480800e-05, 3.1899e+00, 1.9840e-01, + 2DIAGNOSTIC, 17, -4.142810082350e-01, 2.851485448019e-05, 3.2986e+00, 1.0864e-01, + 2DIAGNOSTIC, 18, -4.142809520970e-01, 2.683133599452e-05, 3.3888e+00, 9.0257e-02, + 2DIAGNOSTIC, 19, -4.142812616402e-01, 2.357130716039e-05, 3.4962e+00, 1.0739e-01, + 2DIAGNOSTIC, 20, -4.142824995923e-01, 1.923642076536e-05, 3.5983e+00, 1.0210e-01, + 2DIAGNOSTIC, 21, -4.142830918566e-01, 1.439267228157e-05, 3.7165e+00, 1.1813e-01, + 2DIAGNOSTIC, 22, -4.142840128450e-01, 9.547120117144e-06, 3.8185e+00, 1.0199e-01, + 2DIAGNOSTIC, 23, -4.142841299012e-01, 5.366353311796e-06, 3.9282e+00, 1.0975e-01, + 2DIAGNOSTIC, 24, -4.142857249597e-01, 2.869322200762e-06, 4.0312e+00, 1.0303e-01, + 2DIAGNOSTIC, 25, -4.142886748333e-01, 1.648620370186e-06, 4.1322e+00, 1.0094e-01, + 2DIAGNOSTIC, 26, -4.142916863833e-01, 1.791145048904e-06, 4.2209e+00, 8.8716e-02, + 2DIAGNOSTIC, 27, -4.142945903731e-01, 1.899119883894e-06, 4.3191e+00, 9.8170e-02, + 2DIAGNOSTIC, 28, -4.142966350339e-01, 1.980329141713e-06, 4.4322e+00, 1.1318e-01, + 2DIAGNOSTIC, 29, -4.142977820563e-01, 2.010122828980e-06, 4.5203e+00, 8.8035e-02, + 2DIAGNOSTIC, 30, -4.142978526335e-01, 1.980851949482e-06, 4.6077e+00, 8.7461e-02, + 2DIAGNOSTIC, 31, -4.142981024274e-01, 1.884447430489e-06, 4.6959e+00, 8.8169e-02, + 2DIAGNOSTIC, 32, -4.142985153396e-01, 1.741585352932e-06, 4.9882e+00, 2.9231e-01, + 2DIAGNOSTIC, 33, -4.142985153387e-01, 1.538586619450e-06, 5.2624e+00, 2.7419e-01, + 2DIAGNOSTIC, 34, -4.142985153387e-01, 1.324840587721e-06, 5.3763e+00, 1.1387e-01, + 2DIAGNOSTIC, 35, -4.142985153387e-01, 1.143873222285e-06, 5.4948e+00, 1.1854e-01, + 2DIAGNOSTIC, 36, -4.142985153387e-01, 1.007197123870e-06, 5.6131e+00, 1.1825e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.587001872397e-01, 1.797693134862e+308, 6.8900e+00, 1.2769e+00, + 2DIAGNOSTIC, 2, -3.589572346587e-01, 1.797693134862e+308, 7.4926e+00, 6.0258e-01, + 2DIAGNOSTIC, 3, -3.591071430810e-01, 1.797693134862e+308, 8.1291e+00, 6.3652e-01, + 2DIAGNOSTIC, 4, -3.592142765934e-01, 1.797693134862e+308, 8.7286e+00, 5.9951e-01, + 2DIAGNOSTIC, 5, -3.593760408221e-01, 1.797693134862e+308, 9.6170e+00, 8.8844e-01, + 2DIAGNOSTIC, 6, -3.593941951494e-01, 1.797693134862e+308, 1.0360e+01, 7.4257e-01, + 2DIAGNOSTIC, 7, -3.593922162279e-01, 1.797693134862e+308, 1.1102e+01, 7.4232e-01, + 2DIAGNOSTIC, 8, -3.593918708157e-01, 1.797693134862e+308, 1.2070e+01, 9.6763e-01, + 2DIAGNOSTIC, 9, -3.593920038588e-01, 1.797693134862e+308, 1.2743e+01, 6.7383e-01, + 2DIAGNOSTIC, 10, -3.593919470247e-01, 1.105856070234e-04, 1.3404e+01, 6.6044e-01, + 2DIAGNOSTIC, 11, -3.593913545399e-01, 6.149244892420e-05, 1.4081e+01, 6.7763e-01, + 2DIAGNOSTIC, 12, -3.593913610183e-01, 3.225145182285e-05, 1.4828e+01, 7.4700e-01, + 2DIAGNOSTIC, 13, -3.593911810025e-01, 1.389944904943e-05, 1.5456e+01, 6.2753e-01, + 2DIAGNOSTIC, 14, -3.593911081466e-01, 2.927379490300e-06, 1.6113e+01, 6.5727e-01, + 2DIAGNOSTIC, 15, -3.593910033032e-01, 1.855385380820e-06, 1.6702e+01, 5.8847e-01, + 2DIAGNOSTIC, 16, -3.593908928345e-01, 1.837059388499e-06, 1.7231e+01, 5.2887e-01, + 2DIAGNOSTIC, 17, -3.593907931934e-01, 1.738786685114e-06, 1.7835e+01, 6.0437e-01, + 2DIAGNOSTIC, 18, -3.593908381963e-01, 1.650022635198e-06, 1.8427e+01, 5.9191e-01, + 2DIAGNOSTIC, 19, -3.593908672673e-01, 1.587945699530e-06, 1.8975e+01, 5.4809e-01, + 2DIAGNOSTIC, 20, -3.593907900638e-01, 1.535409319721e-06, 1.9509e+01, 5.3364e-01, + 2DIAGNOSTIC, 21, -3.593907463250e-01, 1.469167839177e-06, 2.0100e+01, 5.9091e-01, + 2DIAGNOSTIC, 22, -3.593908837782e-01, 1.418600937171e-06, 2.0765e+01, 6.6544e-01, + 2DIAGNOSTIC, 23, -3.593910025670e-01, 1.372660968578e-06, 2.1450e+01, 6.8515e-01, + 2DIAGNOSTIC, 24, -3.593909233237e-01, 1.326443977864e-06, 2.2106e+01, 6.5596e-01, + 2DIAGNOSTIC, 25, -3.593908523317e-01, 1.278604441185e-06, 2.2770e+01, 6.6390e-01, + 2DIAGNOSTIC, 26, -3.593906482447e-01, 1.224539051874e-06, 2.3396e+01, 6.2649e-01, + 2DIAGNOSTIC, 27, -3.593903510617e-01, 1.162740232000e-06, 2.4182e+01, 7.8545e-01, + 2DIAGNOSTIC, 28, -3.593903958249e-01, 1.109368287483e-06, 2.4881e+01, 6.9937e-01, + 2DIAGNOSTIC, 29, -3.593900818019e-01, 1.054360429194e-06, 2.5549e+01, 6.6778e-01, + 2DIAGNOSTIC, 30, -3.593899971029e-01, 1.003100166312e-06, 2.6128e+01, 5.7919e-01, + Elapsed time (stage 1): 2.6471e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.348772539797e-01, 1.797693134862e+308, 2.4242e-01, 2.4242e-01, + 1DIAGNOSTIC, 2, -8.486383110653e-01, 1.797693134862e+308, 3.4382e-01, 1.0140e-01, + 1DIAGNOSTIC, 3, -8.587762192013e-01, 1.797693134862e+308, 4.3708e-01, 9.3261e-02, + 1DIAGNOSTIC, 4, -8.666376015761e-01, 1.797693134862e+308, 5.3510e-01, 9.8021e-02, + 1DIAGNOSTIC, 5, -8.729925207072e-01, 1.797693134862e+308, 6.2896e-01, 9.3854e-02, + 1DIAGNOSTIC, 6, -8.780203692628e-01, 1.797693134862e+308, 7.2397e-01, 9.5012e-02, + 1DIAGNOSTIC, 7, -8.819692474387e-01, 1.797693134862e+308, 8.2158e-01, 9.7614e-02, + 1DIAGNOSTIC, 8, -8.852703442435e-01, 1.797693134862e+308, 9.2065e-01, 9.9061e-02, + 1DIAGNOSTIC, 9, -8.879949479959e-01, 1.797693134862e+308, 1.0261e+00, 1.0545e-01, + 1DIAGNOSTIC, 10, -8.902965643482e-01, 3.803054376740e-03, 1.1230e+00, 9.6891e-02, + 1DIAGNOSTIC, 11, -8.919941033696e-01, 2.735352177758e-03, 1.2197e+00, 9.6729e-02, + 1DIAGNOSTIC, 12, -8.933936435311e-01, 2.010684539920e-03, 1.3160e+00, 9.6307e-02, + 1DIAGNOSTIC, 13, -8.944305190919e-01, 1.494364062145e-03, 1.4144e+00, 9.8337e-02, + 1DIAGNOSTIC, 14, -8.953163889038e-01, 1.117799934513e-03, 1.5132e+00, 9.8849e-02, + 1DIAGNOSTIC, 15, -8.960923687430e-01, 8.425775832379e-04, 1.6096e+00, 9.6347e-02, + 1DIAGNOSTIC, 16, -8.967423694963e-01, 6.387356349108e-04, 1.7094e+00, 9.9805e-02, + 1DIAGNOSTIC, 17, -8.972448816815e-01, 4.842530696700e-04, 1.8021e+00, 9.2709e-02, + 1DIAGNOSTIC, 18, -8.976593423380e-01, 3.685025556921e-04, 1.8982e+00, 9.6170e-02, + 1DIAGNOSTIC, 19, -8.979880225548e-01, 2.822774778351e-04, 1.9952e+00, 9.7000e-02, + 1DIAGNOSTIC, 20, -8.982250139655e-01, 2.191293142460e-04, 2.0897e+00, 9.4443e-02, + 1DIAGNOSTIC, 21, -8.983961293554e-01, 1.700716462967e-04, 2.1829e+00, 9.3223e-02, + 1DIAGNOSTIC, 22, -8.985144716377e-01, 1.317580163050e-04, 2.2805e+00, 9.7601e-02, + 1DIAGNOSTIC, 23, -8.985992168580e-01, 1.001188622931e-04, 2.3870e+00, 1.0645e-01, + 1DIAGNOSTIC, 24, -8.986465687989e-01, 7.421686401836e-05, 2.4869e+00, 9.9918e-02, + 1DIAGNOSTIC, 25, -8.986604568081e-01, 5.357888677768e-05, 2.5848e+00, 9.7878e-02, + 1DIAGNOSTIC, 26, -8.986453854313e-01, 3.737835594329e-05, 2.6798e+00, 9.5025e-02, + 1DIAGNOSTIC, 27, -8.985773903990e-01, 2.407948790457e-05, 2.7775e+00, 9.7679e-02, + 1DIAGNOSTIC, 28, -8.985087878463e-01, 1.349582445016e-05, 2.8712e+00, 9.3721e-02, + 1DIAGNOSTIC, 29, -8.984247305458e-01, 5.151170892684e-06, 2.9665e+00, 9.5275e-02, + 1DIAGNOSTIC, 30, -8.983314956787e-01, -1.500848909389e-06, 3.0608e+00, 9.4387e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.777092653909e-01, 1.797693134862e+308, 3.8973e+00, 8.3648e-01, + 1DIAGNOSTIC, 2, -8.802042877648e-01, 1.797693134862e+308, 4.5646e+00, 6.6730e-01, + 1DIAGNOSTIC, 3, -8.837401006610e-01, 1.797693134862e+308, 5.2341e+00, 6.6943e-01, + 1DIAGNOSTIC, 4, -8.876938292265e-01, 1.797693134862e+308, 5.9005e+00, 6.6647e-01, + 1DIAGNOSTIC, 5, -8.907445941099e-01, 1.797693134862e+308, 6.5621e+00, 6.6159e-01, + 1DIAGNOSTIC, 6, -8.933412118128e-01, 1.797693134862e+308, 7.2341e+00, 6.7200e-01, + 1DIAGNOSTIC, 7, -8.955856300750e-01, 1.797693134862e+308, 7.9030e+00, 6.6893e-01, + 1DIAGNOSTIC, 8, -8.975520232018e-01, 1.797693134862e+308, 8.5610e+00, 6.5800e-01, + 1DIAGNOSTIC, 9, -8.991961424451e-01, 1.797693134862e+308, 9.1975e+00, 6.3641e-01, + 1DIAGNOSTIC, 10, -9.006769090030e-01, 1.706248564302e-03, 9.8495e+00, 6.5210e-01, + 1DIAGNOSTIC, 11, -9.020065813516e-01, 1.400211920085e-03, 1.0518e+01, 6.6814e-01, + 1DIAGNOSTIC, 12, -9.030969225484e-01, 1.114192176610e-03, 1.1148e+01, 6.2995e-01, + 1DIAGNOSTIC, 13, -9.040986738172e-01, 8.815509397596e-04, 1.1794e+01, 6.4609e-01, + 1DIAGNOSTIC, 14, -9.050203637127e-01, 7.121265891564e-04, 1.2467e+01, 6.7326e-01, + 1DIAGNOSTIC, 15, -9.058752273342e-01, 5.824165535707e-04, 1.3097e+01, 6.2981e-01, + 1DIAGNOSTIC, 16, -9.066561434590e-01, 4.820283525230e-04, 1.3735e+01, 6.3782e-01, + 1DIAGNOSTIC, 17, -9.073694583776e-01, 4.038823890251e-04, 1.4395e+01, 6.6052e-01, + 1DIAGNOSTIC, 18, -9.080488845890e-01, 3.434470767657e-04, 1.5049e+01, 6.5391e-01, + 1DIAGNOSTIC, 19, -9.086801747034e-01, 2.952212294473e-04, 1.5699e+01, 6.4950e-01, + 1DIAGNOSTIC, 20, -9.092786527215e-01, 2.570592613836e-04, 1.6335e+01, 6.3688e-01, + 1DIAGNOSTIC, 21, -9.098312796423e-01, 2.267988428086e-04, 1.6984e+01, 6.4862e-01, + 1DIAGNOSTIC, 22, -9.103480768162e-01, 2.010993221436e-04, 1.7651e+01, 6.6725e-01, + 1DIAGNOSTIC, 23, -9.108326707836e-01, 1.791468309177e-04, 1.8296e+01, 6.4484e-01, + 1DIAGNOSTIC, 24, -9.112736396527e-01, 1.600798293099e-04, 1.8935e+01, 6.3910e-01, + 1DIAGNOSTIC, 25, -9.116970142440e-01, 1.435888655867e-04, 1.9612e+01, 6.7670e-01, + 1DIAGNOSTIC, 26, -9.121030372641e-01, 1.292229461892e-04, 2.0270e+01, 6.5832e-01, + 1DIAGNOSTIC, 27, -9.124812994295e-01, 1.164610187115e-04, 2.0933e+01, 6.6289e-01, + 1DIAGNOSTIC, 28, -9.128427254923e-01, 1.053212313286e-04, 2.1615e+01, 6.8183e-01, + 1DIAGNOSTIC, 29, -9.131850088357e-01, 9.556450677046e-05, 2.2282e+01, 6.6717e-01, + 1DIAGNOSTIC, 30, -9.135117146239e-01, 8.712661714589e-05, 2.2954e+01, 6.7175e-01, + 1DIAGNOSTIC, 31, -9.138184335463e-01, 7.970735141014e-05, 2.3622e+01, 6.6780e-01, + 1DIAGNOSTIC, 32, -9.141093640559e-01, 7.314411316084e-05, 2.4266e+01, 6.4427e-01, + 1DIAGNOSTIC, 33, -9.143856434812e-01, 6.730654606536e-05, 2.4914e+01, 6.4814e-01, + 1DIAGNOSTIC, 34, -9.146529006147e-01, 6.198634042887e-05, 2.5556e+01, 6.4218e-01, + 1DIAGNOSTIC, 35, -9.149114556615e-01, 5.721898315599e-05, 2.6218e+01, 6.6151e-01, + 1DIAGNOSTIC, 36, -9.151507341573e-01, 5.292692976396e-05, 2.6862e+01, 6.4441e-01, + 1DIAGNOSTIC, 37, -9.153657480494e-01, 4.889111114029e-05, 2.7508e+01, 6.4583e-01, + 1DIAGNOSTIC, 38, -9.155731419472e-01, 4.514140091218e-05, 2.8142e+01, 6.3428e-01, + 1DIAGNOSTIC, 39, -9.157667311974e-01, 4.162220871475e-05, 2.8794e+01, 6.5198e-01, + 1DIAGNOSTIC, 40, -9.159379032802e-01, 3.824446774676e-05, 2.9434e+01, 6.3971e-01, + 1DIAGNOSTIC, 41, -9.161055566039e-01, 3.504693487665e-05, 3.0076e+01, 6.4223e-01, + 1DIAGNOSTIC, 42, -9.162605555450e-01, 3.202165731081e-05, 3.0721e+01, 6.4427e-01, + 1DIAGNOSTIC, 43, -9.164119758111e-01, 2.923249950343e-05, 3.1378e+01, 6.5792e-01, + 1DIAGNOSTIC, 44, -9.165407069887e-01, 2.663099068789e-05, 3.2022e+01, 6.4367e-01, + 1DIAGNOSTIC, 45, -9.166688147180e-01, 2.433094959650e-05, 3.2662e+01, 6.4039e-01, + 1DIAGNOSTIC, 46, -9.167893130111e-01, 2.229401618712e-05, 3.3305e+01, 6.4250e-01, + 1DIAGNOSTIC, 47, -9.169019111738e-01, 2.043116520009e-05, 3.3967e+01, 6.6232e-01, + 1DIAGNOSTIC, 48, -9.170072655018e-01, 1.876947132121e-05, 3.4614e+01, 6.4684e-01, + 1DIAGNOSTIC, 49, -9.170963906157e-01, 1.722761524979e-05, 3.5275e+01, 6.6044e-01, + 1DIAGNOSTIC, 50, -9.171841349132e-01, 1.576170571777e-05, 3.5927e+01, 6.5219e-01, + 1DIAGNOSTIC, 51, -9.172810836263e-01, 1.450830249501e-05, 3.6585e+01, 6.5792e-01, + 1DIAGNOSTIC, 52, -9.173626489322e-01, 1.337340406288e-05, 3.7224e+01, 6.3974e-01, + 1DIAGNOSTIC, 53, -9.174381625849e-01, 1.238271081666e-05, 3.7862e+01, 6.3737e-01, + 1DIAGNOSTIC, 54, -9.175084873162e-01, 1.143871516892e-05, 3.8499e+01, 6.3732e-01, + 1DIAGNOSTIC, 55, -9.175667013527e-01, 1.053418433025e-05, 3.9162e+01, 6.6310e-01, + 1DIAGNOSTIC, 56, -9.176296180471e-01, 9.717294857017e-06, 3.9816e+01, 6.5412e-01, + 1DIAGNOSTIC, 57, -9.176864483288e-01, 8.966239594239e-06, 4.0485e+01, 6.6893e-01, + 1DIAGNOSTIC, 58, -9.177212666593e-01, 8.179966688185e-06, 4.1134e+01, 6.4854e-01, + 1DIAGNOSTIC, 59, -9.177702459895e-01, 7.413568248193e-06, 4.1798e+01, 6.6436e-01, + 1DIAGNOSTIC, 60, -9.178143976152e-01, 6.688179324751e-06, 4.2471e+01, 6.7297e-01, + 1DIAGNOSTIC, 61, -9.178637654988e-01, 6.134548846206e-06, 4.3139e+01, 6.6798e-01, + 1DIAGNOSTIC, 62, -9.179104745785e-01, 5.696556869293e-06, 4.3806e+01, 6.6701e-01, + 1DIAGNOSTIC, 63, -9.179540728196e-01, 5.358162137349e-06, 4.4447e+01, 6.4067e-01, + 1DIAGNOSTIC, 64, -9.180008359278e-01, 5.130086834448e-06, 4.5105e+01, 6.5770e-01, + 1DIAGNOSTIC, 65, -9.180376788952e-01, 4.911699994441e-06, 4.5756e+01, 6.5199e-01, + 1DIAGNOSTIC, 66, -9.180788005000e-01, 4.760072147062e-06, 4.6431e+01, 6.7408e-01, + 1DIAGNOSTIC, 67, -9.181186385053e-01, 4.647888961141e-06, 4.7093e+01, 6.6200e-01, + 1DIAGNOSTIC, 68, -9.181494430629e-01, 4.432966966613e-06, 4.7765e+01, 6.7239e-01, + 1DIAGNOSTIC, 69, -9.181809978454e-01, 4.203433847171e-06, 4.8416e+01, 6.5060e-01, + 1DIAGNOSTIC, 70, -9.182185695571e-01, 3.980017433767e-06, 4.9075e+01, 6.5954e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.826547917432e-01, 1.797693134862e+308, 5.4702e+01, 5.6266e+00, + 1DIAGNOSTIC, 2, -8.851571745944e-01, 1.797693134862e+308, 6.0023e+01, 5.3212e+00, + 1DIAGNOSTIC, 3, -8.877513962635e-01, 1.797693134862e+308, 6.5359e+01, 5.3360e+00, + 1DIAGNOSTIC, 4, -8.900100507630e-01, 1.797693134862e+308, 7.0678e+01, 5.3192e+00, + 1DIAGNOSTIC, 5, -8.919029364624e-01, 1.797693134862e+308, 7.6056e+01, 5.3782e+00, + 1DIAGNOSTIC, 6, -8.935188804272e-01, 1.797693134862e+308, 8.1359e+01, 5.3024e+00, + 1DIAGNOSTIC, 7, -8.948013105369e-01, 1.797693134862e+308, 8.6698e+01, 5.3389e+00, + 1DIAGNOSTIC, 8, -8.959192720929e-01, 1.797693134862e+308, 9.2028e+01, 5.3305e+00, + 1DIAGNOSTIC, 9, -8.969138723008e-01, 1.797693134862e+308, 9.7417e+01, 5.3891e+00, + 1DIAGNOSTIC, 10, -8.978002969674e-01, 1.075923013803e-03, 1.0276e+02, 5.3400e+00, + 1DIAGNOSTIC, 11, -8.986238362948e-01, 8.478355154021e-04, 1.0811e+02, 5.3528e+00, + 1DIAGNOSTIC, 12, -8.993918670303e-01, 6.678135257332e-04, 1.1343e+02, 5.3220e+00, + 1DIAGNOSTIC, 13, -9.001242044115e-01, 5.360289319102e-04, 1.1881e+02, 5.3747e+00, + 1DIAGNOSTIC, 14, -9.008429910766e-01, 4.415283774975e-04, 1.2417e+02, 5.3638e+00, + 1DIAGNOSTIC, 15, -9.015497014968e-01, 3.739754888185e-04, 1.2954e+02, 5.3666e+00, + 1DIAGNOSTIC, 16, -9.021558218943e-01, 3.244076118259e-04, 1.3490e+02, 5.3661e+00, + 1DIAGNOSTIC, 17, -9.027752964808e-01, 2.861465825457e-04, 1.4028e+02, 5.3795e+00, + 1DIAGNOSTIC, 18, -9.034094668856e-01, 2.564191318278e-04, 1.4562e+02, 5.3381e+00, + 1DIAGNOSTIC, 19, -9.040702873083e-01, 2.335238485809e-04, 1.5100e+02, 5.3836e+00, + 1DIAGNOSTIC, 20, -9.047609539936e-01, 2.160635425767e-04, 1.5639e+02, 5.3821e+00, + 1DIAGNOSTIC, 21, -9.054942055422e-01, 2.035145737887e-04, 1.6178e+02, 5.3895e+00, + 1DIAGNOSTIC, 22, -9.062771812193e-01, 1.953258373373e-04, 1.6711e+02, 5.3348e+00, + 1DIAGNOSTIC, 23, -9.071246028235e-01, 1.911811508070e-04, 1.7249e+02, 5.3831e+00, + 1DIAGNOSTIC, 24, -9.079108652734e-01, 1.891470296709e-04, 1.7788e+02, 5.3845e+00, + 1DIAGNOSTIC, 25, -9.085523865814e-01, 1.864951061493e-04, 1.8322e+02, 5.3394e+00, + 1DIAGNOSTIC, 26, -9.091976259695e-01, 1.816948801776e-04, 1.8854e+02, 5.3251e+00, + 1DIAGNOSTIC, 27, -9.097294005155e-01, 1.735432860773e-04, 1.9391e+02, 5.3627e+00, + 1DIAGNOSTIC, 28, -9.101738932435e-01, 1.617147302043e-04, 1.9924e+02, 5.3331e+00, + 1DIAGNOSTIC, 29, -9.105505403933e-01, 1.467038817214e-04, 2.0459e+02, 5.3492e+00, + 1DIAGNOSTIC, 30, -9.108782879172e-01, 1.295410793318e-04, 2.0992e+02, 5.3309e+00, + 1DIAGNOSTIC, 31, -9.111651974234e-01, 1.115954442511e-04, 2.1529e+02, 5.3692e+00, + 1DIAGNOSTIC, 32, -9.112899921847e-01, 9.310247038655e-05, 2.2064e+02, 5.3521e+00, + 1DIAGNOSTIC, 33, -9.114239938646e-01, 7.628858874861e-05, 2.2602e+02, 5.3775e+00, + 1DIAGNOSTIC, 34, -9.115618625322e-01, 6.180880719357e-05, 2.3138e+02, 5.3591e+00, + 1DIAGNOSTIC, 35, -9.117037119229e-01, 4.931553778609e-05, 2.3673e+02, 5.3513e+00, + 1DIAGNOSTIC, 36, -9.118522898522e-01, 3.977445527543e-05, 2.4213e+02, 5.3981e+00, + 1DIAGNOSTIC, 37, -9.120101179177e-01, 3.286435948715e-05, 2.4752e+02, 5.3937e+00, + 1DIAGNOSTIC, 38, -9.121773173800e-01, 2.829315662227e-05, 2.5286e+02, 5.3397e+00, + 1DIAGNOSTIC, 39, -9.123570170799e-01, 2.576968106505e-05, 2.5823e+02, 5.3685e+00, + 1DIAGNOSTIC, 40, -9.125483813192e-01, 2.501021275662e-05, 2.6361e+02, 5.3843e+00, + 1DIAGNOSTIC, 41, -9.127541329889e-01, 2.572741634803e-05, 2.6897e+02, 5.3536e+00, + 1DIAGNOSTIC, 42, -9.129657863572e-01, 2.651476400956e-05, 2.7432e+02, 5.3587e+00, + 1DIAGNOSTIC, 43, -9.131801374612e-01, 2.732005239242e-05, 2.7969e+02, 5.3687e+00, + 1DIAGNOSTIC, 44, -9.134019236078e-01, 2.808668826533e-05, 2.8504e+02, 5.3471e+00, + 1DIAGNOSTIC, 45, -9.136268230935e-01, 2.873136764982e-05, 2.9041e+02, 5.3707e+00, + 1DIAGNOSTIC, 46, -9.138365438132e-01, 2.908099855025e-05, 2.9578e+02, 5.3708e+00, + 1DIAGNOSTIC, 47, -9.140362118226e-01, 2.905875785647e-05, 3.0112e+02, 5.3331e+00, + 1DIAGNOSTIC, 48, -9.142275342351e-01, 2.863763514874e-05, 3.0648e+02, 5.3630e+00, + 1DIAGNOSTIC, 49, -9.144092221884e-01, 2.784025494720e-05, 3.1184e+02, 5.3612e+00, + 1DIAGNOSTIC, 50, -9.145888644318e-01, 2.676772261282e-05, 3.1721e+02, 5.3664e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.909958830321e-01, 1.797693134862e+308, 3.6116e+02, 4.3953e+01, + 1DIAGNOSTIC, 2, -8.917219447293e-01, 1.797693134862e+308, 4.0443e+02, 4.3266e+01, + 1DIAGNOSTIC, 3, -8.926981171480e-01, 1.797693134862e+308, 4.4750e+02, 4.3073e+01, + 1DIAGNOSTIC, 4, -8.936616729145e-01, 1.797693134862e+308, 4.9094e+02, 4.3446e+01, + 1DIAGNOSTIC, 5, -8.945825915470e-01, 1.797693134862e+308, 5.3423e+02, 4.3285e+01, + 1DIAGNOSTIC, 6, -8.954769511870e-01, 1.797693134862e+308, 5.7755e+02, 4.3317e+01, + 1DIAGNOSTIC, 7, -8.963619121237e-01, 1.797693134862e+308, 6.2074e+02, 4.3198e+01, + 1DIAGNOSTIC, 8, -8.972622432067e-01, 1.797693134862e+308, 6.6393e+02, 4.3185e+01, + 1DIAGNOSTIC, 9, -8.981835697076e-01, 1.797693134862e+308, 7.0729e+02, 4.3356e+01, + 1DIAGNOSTIC, 10, -8.991404044259e-01, 5.875460013630e-04, 7.5080e+02, 4.3518e+01, + 1DIAGNOSTIC, 11, -9.001437520165e-01, 5.401925935300e-04, 7.9390e+02, 4.3095e+01, + 1DIAGNOSTIC, 12, -9.011120759691e-01, 4.966977224574e-04, 8.3728e+02, 4.3377e+01, + 1DIAGNOSTIC, 13, -9.020769549927e-01, 4.620631954537e-04, 8.8055e+02, 4.3270e+01, + 1DIAGNOSTIC, 14, -9.027762136514e-01, 4.277673267790e-04, 9.2399e+02, 4.3446e+01, + 1DIAGNOSTIC, 15, -9.035724193477e-01, 3.951378128820e-04, 9.6758e+02, 4.3587e+01, + 1DIAGNOSTIC, 16, -9.042065921898e-01, 3.603781067885e-04, 1.0111e+03, 4.3477e+01, + 1DIAGNOSTIC, 17, -9.046952478938e-01, 3.219431017893e-04, 1.0547e+03, 4.3675e+01, + 1DIAGNOSTIC, 18, -9.051367836182e-01, 2.815712441198e-04, 1.0983e+03, 4.3547e+01, + 1DIAGNOSTIC, 19, -9.055408333558e-01, 2.413714213018e-04, 1.1417e+03, 4.3374e+01, + 1DIAGNOSTIC, 20, -9.059061579000e-01, 2.035588945263e-04, 1.1852e+03, 4.3512e+01, + Elapsed time (stage 2): 1186 + + +Total elapsed time: 1236 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:50:53 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:50:53 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:50:56 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:04 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1373 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:05 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:08 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1416 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:08 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:11 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:11 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1471 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:11 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1476 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:11 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:16 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:18 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:18 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:19 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:22 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:22 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:23 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:24 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC007 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:36 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:47 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC007 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:47 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC007 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:48 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC007 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:48 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 2179 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:50 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 2218 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:52 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:52 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC007_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 68.383 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/logs/proc_func_18-03-2024-3172.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:58 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC007 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/QC/sub-PNC007_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC007* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 68.433 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC007_ses-03 +========================reprocessing without filter=================== +sub-PNC008_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC008 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC008 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC008 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC008 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:52:03 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:52:04 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:54:13 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:56:19 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:56:33 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.28 (mm) at sub-brick 185 +++ Max delta displ in automask = 1.04 (mm) at sub-brick 106 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:09:24 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:09:43 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:11:55 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:14:04 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz is 39.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:16:13 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.198 -1.840 2.570 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.7 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.473 -2.841 3.930 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.9 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:20:55 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:21:22 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x561616583a50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [107.902, 59.9211, -103.711] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5616163fa730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x56161659a350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x56161658a600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.6093, 131.5, -121.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x56161658ce40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x561616d96f50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x561616d95270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [107.902, 59.9211, -103.711] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x561616589640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5616178c11c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x561616d94a00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.6093, 131.5, -121.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x561616590390) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5616180bb300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.296875363065e-01, 1.797693134862e+308, 4.0259e-02, 4.0258e-02, + 2DIAGNOSTIC, 2, -7.335096950296e-01, 1.797693134862e+308, 4.1338e-02, 1.0791e-03, + 2DIAGNOSTIC, 3, -7.380829937343e-01, 1.797693134862e+308, 4.2538e-02, 1.2002e-03, + 2DIAGNOSTIC, 4, -7.438877641360e-01, 1.797693134862e+308, 4.3766e-02, 1.2279e-03, + 2DIAGNOSTIC, 5, -7.509983792133e-01, 1.797693134862e+308, 4.5043e-02, 1.2770e-03, + 2DIAGNOSTIC, 6, -7.567042682242e-01, 1.797693134862e+308, 4.6533e-02, 1.4901e-03, + 2DIAGNOSTIC, 7, -7.587346426069e-01, 1.797693134862e+308, 4.7617e-02, 1.0841e-03, + 2DIAGNOSTIC, 8, -7.636691184323e-01, 1.797693134862e+308, 4.8945e-02, 1.3280e-03, + 2DIAGNOSTIC, 9, -7.690840671063e-01, 1.797693134862e+308, 5.1534e-02, 2.5890e-03, + 2DIAGNOSTIC, 10, -7.691209811611e-01, 3.647780990115e-03, 5.2984e-02, 1.4501e-03, + 2DIAGNOSTIC, 11, -7.695114381557e-01, 2.990105739838e-03, 5.4409e-02, 1.4241e-03, + 2DIAGNOSTIC, 12, -7.699867329400e-01, 2.313513279349e-03, 5.5737e-02, 1.3280e-03, + 2DIAGNOSTIC, 13, -7.704319993110e-01, 1.676702405779e-03, 5.7076e-02, 1.3399e-03, + 2DIAGNOSTIC, 14, -7.708242662628e-01, 1.141166708248e-03, 5.8439e-02, 1.3621e-03, + 2DIAGNOSTIC, 15, -7.710770689680e-01, 7.565746732220e-04, 5.9757e-02, 1.3180e-03, + 2DIAGNOSTIC, 16, -7.711766034416e-01, 4.897046546798e-04, 6.1445e-02, 1.6880e-03, + 2DIAGNOSTIC, 17, -7.712445168756e-01, 2.543048285083e-04, 6.3173e-02, 1.7281e-03, + 2DIAGNOSTIC, 18, -7.712935549228e-01, 1.224564826905e-04, 6.4464e-02, 1.2910e-03, + 2DIAGNOSTIC, 19, -7.714582872733e-01, 1.033137593535e-04, 6.5781e-02, 1.3170e-03, + 2DIAGNOSTIC, 20, -7.715548826743e-01, 7.903084359852e-05, 6.7350e-02, 1.5690e-03, + 2DIAGNOSTIC, 21, -7.715851999093e-01, 5.727651595519e-05, 6.9310e-02, 1.9600e-03, + 2DIAGNOSTIC, 22, -7.715911904640e-01, 4.043726982916e-05, 7.0676e-02, 1.3661e-03, + 2DIAGNOSTIC, 23, -7.716259422522e-01, 2.910914580397e-05, 7.2168e-02, 1.4920e-03, + 2DIAGNOSTIC, 24, -7.716306885795e-01, 2.216771121596e-05, 7.3470e-02, 1.3020e-03, + 2DIAGNOSTIC, 25, -7.716352184142e-01, 1.761809649114e-05, 7.4771e-02, 1.3011e-03, + 2DIAGNOSTIC, 26, -7.716426285854e-01, 1.343113390357e-05, 7.6299e-02, 1.5280e-03, + 2DIAGNOSTIC, 27, -7.716569198301e-01, 9.565974093857e-06, 7.7842e-02, 1.5430e-03, + 2DIAGNOSTIC, 28, -7.716681759397e-01, 5.938524404780e-06, 7.9201e-02, 1.3590e-03, + 2DIAGNOSTIC, 29, -7.716785257255e-01, 4.323222756869e-06, 8.0954e-02, 1.7531e-03, + 2DIAGNOSTIC, 30, -7.716830576908e-01, 3.762134415400e-06, 8.2302e-02, 1.3480e-03, + 2DIAGNOSTIC, 31, -7.716865678460e-01, 3.391985859115e-06, 8.4017e-02, 1.7149e-03, + 2DIAGNOSTIC, 32, -7.716903689510e-01, 2.923352375658e-06, 8.5532e-02, 1.5152e-03, + 2DIAGNOSTIC, 33, -7.716905645371e-01, 2.691883772249e-06, 8.6870e-02, 1.3380e-03, + 2DIAGNOSTIC, 34, -7.716923349853e-01, 2.382680588588e-06, 8.8177e-02, 1.3070e-03, + 2DIAGNOSTIC, 35, -7.716977758309e-01, 2.060588948503e-06, 8.9983e-02, 1.8060e-03, + 2DIAGNOSTIC, 36, -7.716983541366e-01, 1.726694239781e-06, 9.1687e-02, 1.7042e-03, + 2DIAGNOSTIC, 37, -7.716984687849e-01, 1.474632998030e-06, 9.3003e-02, 1.3151e-03, + 2DIAGNOSTIC, 38, -7.716989528127e-01, 1.291470281380e-06, 9.4532e-02, 1.5299e-03, + 2DIAGNOSTIC, 39, -7.716990408458e-01, 1.173564049006e-06, 9.7083e-02, 2.5508e-03, + 2DIAGNOSTIC, 40, -7.716990416278e-01, 1.068678389525e-06, 1.0222e-01, 5.1341e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.320740666403e-01, 1.797693134862e+308, 1.4449e-01, 4.2276e-02, + 2DIAGNOSTIC, 2, -4.318159085550e-01, 1.797693134862e+308, 1.4694e-01, 2.4509e-03, + 2DIAGNOSTIC, 3, -4.327832696457e-01, 1.797693134862e+308, 1.4936e-01, 2.4149e-03, + 2DIAGNOSTIC, 4, -4.345446591600e-01, 1.797693134862e+308, 1.5174e-01, 2.3801e-03, + 2DIAGNOSTIC, 5, -4.361893024929e-01, 1.797693134862e+308, 1.5392e-01, 2.1780e-03, + 2DIAGNOSTIC, 6, -4.384791385555e-01, 1.797693134862e+308, 1.5607e-01, 2.1560e-03, + 2DIAGNOSTIC, 7, -4.633184450065e-01, 1.797693134862e+308, 1.5828e-01, 2.2051e-03, + 2DIAGNOSTIC, 8, -5.227079879990e-01, 1.797693134862e+308, 1.6045e-01, 2.1710e-03, + 2DIAGNOSTIC, 9, -5.469123430306e-01, 1.797693134862e+308, 1.6437e-01, 3.9229e-03, + 2DIAGNOSTIC, 10, -5.484581709871e-01, 1.782264011221e-02, 1.6671e-01, 2.3389e-03, + 2DIAGNOSTIC, 11, -5.485212228994e-01, 1.852123185701e-02, 1.6903e-01, 2.3150e-03, + 2DIAGNOSTIC, 12, -5.529924551053e-01, 1.763033815026e-02, 1.7182e-01, 2.7969e-03, + 2DIAGNOSTIC, 13, -5.632852979737e-01, 1.574257648907e-02, 1.7464e-01, 2.8121e-03, + 2DIAGNOSTIC, 14, -5.654031974290e-01, 1.288345628518e-02, 1.7773e-01, 3.0968e-03, + 2DIAGNOSTIC, 15, -5.706586721930e-01, 9.593381399618e-03, 1.8003e-01, 2.3010e-03, + 2DIAGNOSTIC, 16, -5.735697928408e-01, 6.093497650167e-03, 1.8270e-01, 2.6639e-03, + 2DIAGNOSTIC, 17, -5.750780134260e-01, 3.319982511821e-03, 1.8540e-01, 2.6999e-03, + 2DIAGNOSTIC, 18, -5.837564527240e-01, 2.661499433601e-03, 1.8862e-01, 3.2210e-03, + 2DIAGNOSTIC, 19, -5.956813089600e-01, 2.873421673615e-03, 1.9175e-01, 3.1369e-03, + 2DIAGNOSTIC, 20, -6.086614737903e-01, 3.186094484972e-03, 1.9561e-01, 3.8552e-03, + 2DIAGNOSTIC, 21, -6.102004961181e-01, 3.207445323463e-03, 1.9851e-01, 2.9018e-03, + 2DIAGNOSTIC, 22, -6.114040511333e-01, 3.068909736180e-03, 2.0179e-01, 3.2759e-03, + 2DIAGNOSTIC, 23, -6.121686750562e-01, 2.916461897027e-03, 2.0460e-01, 2.8100e-03, + 2DIAGNOSTIC, 24, -6.121757889170e-01, 2.546019573427e-03, 2.0813e-01, 3.5372e-03, + 2DIAGNOSTIC, 25, -6.123197163512e-01, 2.081946256970e-03, 2.1062e-01, 2.4860e-03, + 2DIAGNOSTIC, 26, -6.131804126244e-01, 1.543215787067e-03, 2.1317e-01, 2.5451e-03, + 2DIAGNOSTIC, 27, -6.140298411680e-01, 9.514304920332e-04, 2.1565e-01, 2.4881e-03, + 2DIAGNOSTIC, 28, -6.143233236258e-01, 4.807318110334e-04, 2.1815e-01, 2.4951e-03, + 2DIAGNOSTIC, 29, -6.144880031324e-01, 2.110561403164e-04, 2.2037e-01, 2.2240e-03, + 2DIAGNOSTIC, 30, -6.147754445204e-01, 1.692529949775e-04, 2.2355e-01, 3.1729e-03, + 2DIAGNOSTIC, 31, -6.152056865849e-01, 1.464442729473e-04, 2.2674e-01, 3.1910e-03, + 2DIAGNOSTIC, 32, -6.165122851466e-01, 1.508864559281e-04, 2.3050e-01, 3.7661e-03, + 2DIAGNOSTIC, 33, -6.163474653188e-01, 1.498160320804e-04, 2.3318e-01, 2.6782e-03, + 2DIAGNOSTIC, 34, -6.171008375650e-01, 1.467314563979e-04, 2.3554e-01, 2.3570e-03, + 2DIAGNOSTIC, 35, -6.183449859439e-01, 1.498427115297e-04, 2.3935e-01, 3.8099e-03, + 2DIAGNOSTIC, 36, -6.187868925616e-01, 1.560724780318e-04, 2.4363e-01, 4.2858e-03, + 2DIAGNOSTIC, 37, -6.189165537180e-01, 1.604022169967e-04, 2.4717e-01, 3.5391e-03, + 2DIAGNOSTIC, 38, -6.189435031286e-01, 1.538708066518e-04, 2.5036e-01, 3.1850e-03, + 2DIAGNOSTIC, 39, -6.189928511699e-01, 1.360347310103e-04, 2.5359e-01, 3.2301e-03, + 2DIAGNOSTIC, 40, -6.191575912472e-01, 1.116666996922e-04, 2.5655e-01, 2.9640e-03, + 2DIAGNOSTIC, 41, -6.194614187477e-01, 8.644429601602e-05, 2.5893e-01, 2.3820e-03, + 2DIAGNOSTIC, 42, -6.199569313165e-01, 7.602098507821e-05, 2.6127e-01, 2.3379e-03, + 2DIAGNOSTIC, 43, -6.202794104483e-01, 6.067769305637e-05, 2.6358e-01, 2.3060e-03, + 2DIAGNOSTIC, 44, -6.219522833290e-01, 6.740505797104e-05, 2.6740e-01, 3.8190e-03, + 2DIAGNOSTIC, 45, -6.235171320128e-01, 9.778554019634e-05, 2.6959e-01, 2.1949e-03, + 2DIAGNOSTIC, 46, -6.238198939518e-01, 1.251472725570e-04, 2.7213e-01, 2.5370e-03, + 2DIAGNOSTIC, 47, -6.240570912507e-01, 1.435159027166e-04, 2.7466e-01, 2.5260e-03, + 2DIAGNOSTIC, 48, -6.241705232089e-01, 1.489910624118e-04, 2.7717e-01, 2.5120e-03, + 2DIAGNOSTIC, 49, -6.242462495700e-01, 1.410569034649e-04, 2.7940e-01, 2.2311e-03, + 2DIAGNOSTIC, 50, -6.254121915037e-01, 1.328089477855e-04, 2.8163e-01, 2.2340e-03, + 2DIAGNOSTIC, 51, -6.264762524365e-01, 1.251502826113e-04, 2.8394e-01, 2.3029e-03, + 2DIAGNOSTIC, 52, -6.274765630427e-01, 1.201009490960e-04, 2.8625e-01, 2.3131e-03, + 2DIAGNOSTIC, 53, -6.288230126386e-01, 1.189642176958e-04, 2.8859e-01, 2.3401e-03, + 2DIAGNOSTIC, 54, -6.310713515831e-01, 1.414574505096e-04, 2.9211e-01, 3.5212e-03, + 2DIAGNOSTIC, 55, -6.349686413743e-01, 1.973638301305e-04, 2.9465e-01, 2.5392e-03, + 2DIAGNOSTIC, 56, -6.361286174777e-01, 2.441138234960e-04, 2.9690e-01, 2.2521e-03, + 2DIAGNOSTIC, 57, -6.368258846100e-01, 2.740187409970e-04, 2.9943e-01, 2.5251e-03, + 2DIAGNOSTIC, 58, -6.378101970416e-01, 2.861566771156e-04, 3.0198e-01, 2.5589e-03, + 2DIAGNOSTIC, 59, -6.391911296644e-01, 2.818486459622e-04, 3.0456e-01, 2.5761e-03, + 2DIAGNOSTIC, 60, -6.412878958371e-01, 2.762018056745e-04, 3.0712e-01, 2.5640e-03, + 2DIAGNOSTIC, 61, -6.413136161399e-01, 2.525791288536e-04, 3.0969e-01, 2.5671e-03, + 2DIAGNOSTIC, 62, -6.425150072636e-01, 2.232796363092e-04, 3.1286e-01, 3.1691e-03, + 2DIAGNOSTIC, 63, -6.427390994689e-01, 1.853970471877e-04, 3.1510e-01, 2.2380e-03, + 2DIAGNOSTIC, 64, -6.432356666423e-01, 1.507784491136e-04, 3.1765e-01, 2.5539e-03, + 2DIAGNOSTIC, 65, -6.432992288430e-01, 1.317905889770e-04, 3.1993e-01, 2.2812e-03, + 2DIAGNOSTIC, 66, -6.435896008026e-01, 1.113927954505e-04, 3.2219e-01, 2.2540e-03, + 2DIAGNOSTIC, 67, -6.439349412496e-01, 8.844383545341e-05, 3.2443e-01, 2.2390e-03, + 2DIAGNOSTIC, 68, -6.444785641084e-01, 6.829123288159e-05, 3.2788e-01, 3.4561e-03, + 2DIAGNOSTIC, 69, -6.446693390614e-01, 5.272590901552e-05, 3.3011e-01, 2.2290e-03, + 2DIAGNOSTIC, 70, -6.447617390860e-01, 4.765691822801e-05, 3.3235e-01, 2.2409e-03, + 2DIAGNOSTIC, 71, -6.451900170825e-01, 4.109833405066e-05, 3.3526e-01, 2.9042e-03, + 2DIAGNOSTIC, 72, -6.452765680063e-01, 3.922288959212e-05, 3.3785e-01, 2.5959e-03, + 2DIAGNOSTIC, 73, -6.451515204540e-01, 3.421125452663e-05, 3.4040e-01, 2.5439e-03, + 2DIAGNOSTIC, 74, -6.450837924956e-01, 2.892889448077e-05, 3.4274e-01, 2.3401e-03, + 2DIAGNOSTIC, 75, -6.450451887401e-01, 2.122826651926e-05, 3.4534e-01, 2.6009e-03, + 2DIAGNOSTIC, 76, -6.452992345391e-01, 1.507351637212e-05, 3.4795e-01, 2.6159e-03, + 2DIAGNOSTIC, 77, -6.455669661117e-01, 1.130464425266e-05, 3.5028e-01, 2.3270e-03, + 2DIAGNOSTIC, 78, -6.465618247687e-01, 1.591172007034e-05, 3.5313e-01, 2.8479e-03, + 2DIAGNOSTIC, 79, -6.467402325374e-01, 2.101526845345e-05, 3.5534e-01, 2.2159e-03, + 2DIAGNOSTIC, 80, -6.468542174356e-01, 2.520032215067e-05, 3.5757e-01, 2.2240e-03, + 2DIAGNOSTIC, 81, -6.474213429762e-01, 3.270393098371e-05, 3.6019e-01, 2.6262e-03, + 2DIAGNOSTIC, 82, -6.483717906075e-01, 4.274033740864e-05, 3.6335e-01, 3.1600e-03, + 2DIAGNOSTIC, 83, -6.482906378952e-01, 4.708432228598e-05, 3.6564e-01, 2.2819e-03, + 2DIAGNOSTIC, 84, -6.483050508062e-01, 4.664831027305e-05, 3.6788e-01, 2.2449e-03, + 2DIAGNOSTIC, 85, -6.483412218959e-01, 4.186265767922e-05, 3.7043e-01, 2.5451e-03, + 2DIAGNOSTIC, 86, -6.485315257659e-01, 3.556925756391e-05, 3.7358e-01, 3.1562e-03, + 2DIAGNOSTIC, 87, -6.484564577321e-01, 2.681690075779e-05, 3.7615e-01, 2.5630e-03, + 2DIAGNOSTIC, 88, -6.484573393267e-01, 2.106977224924e-05, 3.7840e-01, 2.2540e-03, + 2DIAGNOSTIC, 89, -6.484601759668e-01, 1.452659099429e-05, 3.8065e-01, 2.2480e-03, + 2DIAGNOSTIC, 90, -6.484696564393e-01, 7.367500460776e-06, 3.8289e-01, 2.2380e-03, + 2DIAGNOSTIC, 91, -6.485133796586e-01, 2.677921816421e-06, 3.8516e-01, 2.2690e-03, + 2DIAGNOSTIC, 92, -6.485264570720e-01, 2.779732679061e-06, 3.8888e-01, 3.7241e-03, + 2DIAGNOSTIC, 93, -6.485266722484e-01, 2.258308888664e-06, 3.9115e-01, 2.2709e-03, + 2DIAGNOSTIC, 94, -6.485276621320e-01, 1.645996062352e-06, 3.9343e-01, 2.2750e-03, + 2DIAGNOSTIC, 95, -6.485308215582e-01, 1.084160462617e-06, 3.9566e-01, 2.2318e-03, + 2DIAGNOSTIC, 96, -6.485413095382e-01, 1.445146968159e-06, 3.9793e-01, 2.2700e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.885796314158e-01, 1.797693134862e+308, 4.6484e-01, 6.6917e-02, + 2DIAGNOSTIC, 2, -4.890124660015e-01, 1.797693134862e+308, 4.7728e-01, 1.2433e-02, + 2DIAGNOSTIC, 3, -4.896582983829e-01, 1.797693134862e+308, 4.8881e-01, 1.1537e-02, + 2DIAGNOSTIC, 4, -4.904034430703e-01, 1.797693134862e+308, 5.0041e-01, 1.1594e-02, + 2DIAGNOSTIC, 5, -4.910886189548e-01, 1.797693134862e+308, 5.1196e-01, 1.1551e-02, + 2DIAGNOSTIC, 6, -4.922966134704e-01, 1.797693134862e+308, 5.2549e-01, 1.3533e-02, + 2DIAGNOSTIC, 7, -4.929146377856e-01, 1.797693134862e+308, 5.3818e-01, 1.2688e-02, + 2DIAGNOSTIC, 8, -4.930707725079e-01, 1.797693134862e+308, 5.4953e-01, 1.1349e-02, + 2DIAGNOSTIC, 9, -4.931746775567e-01, 1.797693134862e+308, 5.6199e-01, 1.2458e-02, + 2DIAGNOSTIC, 10, -4.932629909850e-01, 7.023549259629e-04, 5.7275e-01, 1.0763e-02, + 2DIAGNOSTIC, 11, -4.933400932640e-01, 5.521957752302e-04, 5.8769e-01, 1.4945e-02, + 2DIAGNOSTIC, 12, -4.934715719970e-01, 4.044410406876e-04, 5.9857e-01, 1.0876e-02, + 2DIAGNOSTIC, 13, -4.935175285283e-01, 2.739691045420e-04, 6.0924e-01, 1.0666e-02, + 2DIAGNOSTIC, 14, -4.935542062379e-01, 1.699606444185e-04, 6.2426e-01, 1.5020e-02, + 2DIAGNOSTIC, 15, -4.934992459309e-01, 8.785583266842e-05, 6.3639e-01, 1.2135e-02, + 2DIAGNOSTIC, 16, -4.935111709806e-01, 5.172528795906e-05, 6.4828e-01, 1.1884e-02, + 2DIAGNOSTIC, 17, -4.935252716568e-01, 3.658318630882e-05, 6.6075e-01, 1.2474e-02, + 2DIAGNOSTIC, 18, -4.935419896495e-01, 2.536243055475e-05, 6.7450e-01, 1.3753e-02, + 2DIAGNOSTIC, 19, -4.935443784646e-01, 1.636433971319e-05, 6.8537e-01, 1.0868e-02, + 2DIAGNOSTIC, 20, -4.935351117592e-01, 9.220239155693e-06, 6.9603e-01, 1.0654e-02, + 2DIAGNOSTIC, 21, -4.935326326077e-01, 4.040658577197e-06, 7.0687e-01, 1.0847e-02, + 2DIAGNOSTIC, 22, -4.935885920189e-01, 3.958107757718e-06, 7.2187e-01, 1.4995e-02, + 2DIAGNOSTIC, 23, -4.936485473889e-01, 6.213424099906e-06, 7.3399e-01, 1.2124e-02, + 2DIAGNOSTIC, 24, -4.936938850566e-01, 9.818647376029e-06, 7.4752e-01, 1.3527e-02, + 2DIAGNOSTIC, 25, -4.936759342539e-01, 1.066895800544e-05, 7.5999e-01, 1.2475e-02, + 2DIAGNOSTIC, 26, -4.936771917578e-01, 1.090130333747e-05, 7.7377e-01, 1.3776e-02, + 2DIAGNOSTIC, 27, -4.936698661156e-01, 1.032262024424e-05, 7.8487e-01, 1.1099e-02, + 2DIAGNOSTIC, 28, -4.936698686430e-01, 9.232882894561e-06, 8.0786e-01, 2.2994e-02, + 2DIAGNOSTIC, 29, -4.936698686785e-01, 7.504651510566e-06, 8.2895e-01, 2.1090e-02, + 2DIAGNOSTIC, 30, -4.936698686789e-01, 5.141324567921e-06, 8.5492e-01, 2.5966e-02, + 2DIAGNOSTIC, 31, -4.936698686789e-01, 2.497214271528e-06, 8.6721e-01, 1.2296e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.131579191415e-01, 1.797693134862e+308, 1.0876e+00, 2.2037e-01, + Elapsed time (stage 0): 1.1139e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.300238239234e-01, 1.797693134862e+308, 4.2102e-02, 4.2101e-02, + 2DIAGNOSTIC, 2, -9.329893544130e-01, 1.797693134862e+308, 4.3330e-02, 1.2279e-03, + 2DIAGNOSTIC, 3, -9.375206700850e-01, 1.797693134862e+308, 4.4898e-02, 1.5681e-03, + 2DIAGNOSTIC, 4, -9.419435769177e-01, 1.797693134862e+308, 4.6460e-02, 1.5619e-03, + 2DIAGNOSTIC, 5, -9.488511304435e-01, 1.797693134862e+308, 4.7879e-02, 1.4188e-03, + 2DIAGNOSTIC, 6, -9.662503005169e-01, 1.797693134862e+308, 4.9441e-02, 1.5619e-03, + 2DIAGNOSTIC, 7, -9.773796106381e-01, 1.797693134862e+308, 5.1203e-02, 1.7622e-03, + 2DIAGNOSTIC, 8, -9.806731765817e-01, 1.797693134862e+308, 5.2487e-02, 1.2841e-03, + 2DIAGNOSTIC, 9, -9.814904332529e-01, 1.797693134862e+308, 5.3729e-02, 1.2419e-03, + 2DIAGNOSTIC, 10, -9.816327425708e-01, 4.266770156406e-03, 5.5193e-02, 1.4639e-03, + 2DIAGNOSTIC, 11, -9.837619900437e-01, 3.602321434661e-03, 5.6878e-02, 1.6849e-03, + 2DIAGNOSTIC, 12, -9.859382754663e-01, 2.848270210878e-03, 5.8962e-02, 2.0840e-03, + 2DIAGNOSTIC, 13, -9.874093042076e-01, 2.094643511802e-03, 6.0666e-02, 1.7040e-03, + 2DIAGNOSTIC, 14, -9.870727267188e-01, 1.351178039656e-03, 6.2341e-02, 1.6751e-03, + 2DIAGNOSTIC, 15, -9.868830477240e-01, 7.123668962902e-04, 6.3811e-02, 1.4701e-03, + 2DIAGNOSTIC, 16, -9.867241110366e-01, 4.008305031095e-04, 6.5288e-02, 1.4770e-03, + 2DIAGNOSTIC, 17, -9.875010622089e-01, 2.928554569248e-04, 6.6784e-02, 1.4961e-03, + 2DIAGNOSTIC, 18, -9.905776719673e-01, 2.730615865751e-04, 6.8500e-02, 1.7159e-03, + 2DIAGNOSTIC, 19, -9.924738400956e-01, 2.716582276481e-04, 6.9931e-02, 1.4312e-03, + 2DIAGNOSTIC, 20, -9.954750268498e-01, 2.910537490510e-04, 7.1634e-02, 1.7030e-03, + 2DIAGNOSTIC, 21, -9.990369209429e-01, 3.597582273856e-04, 7.3323e-02, 1.6892e-03, + 2DIAGNOSTIC, 22, -1.008302546059e+00, 5.385164067105e-04, 7.5712e-02, 2.3890e-03, + 2DIAGNOSTIC, 23, -1.009238350053e+00, 6.785544433555e-04, 7.7169e-02, 1.4570e-03, + 2DIAGNOSTIC, 24, -1.011034534868e+00, 7.620335840479e-04, 7.8863e-02, 1.6940e-03, + 2DIAGNOSTIC, 25, -1.010222543500e+00, 7.568997262424e-04, 8.0984e-02, 2.1212e-03, + 2DIAGNOSTIC, 26, -1.008112816043e+00, 6.559668158805e-04, 8.2437e-02, 1.4529e-03, + 2DIAGNOSTIC, 27, -1.009097190078e+00, 5.187847156125e-04, 8.3908e-02, 1.4710e-03, + 2DIAGNOSTIC, 28, -1.010053855088e+00, 3.836489403807e-04, 8.5377e-02, 1.4689e-03, + 2DIAGNOSTIC, 29, -1.011179439756e+00, 2.523467368425e-04, 8.8008e-02, 2.6309e-03, + 2DIAGNOSTIC, 30, -1.011284192870e+00, 1.365081340885e-04, 8.9484e-02, 1.4758e-03, + 2DIAGNOSTIC, 31, -1.011716026044e+00, 5.114136866201e-05, 9.0919e-02, 1.4350e-03, + 2DIAGNOSTIC, 32, -1.012168865631e+00, 5.377215298433e-05, 9.2394e-02, 1.4751e-03, + 2DIAGNOSTIC, 33, -1.011097012516e+00, 4.895764555748e-05, 9.3866e-02, 1.4720e-03, + 2DIAGNOSTIC, 34, -1.011398376743e+00, 5.791397606895e-05, 9.5572e-02, 1.7061e-03, + 2DIAGNOSTIC, 35, -1.007389324914e+00, 2.189428079052e-05, 9.7038e-02, 1.4658e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.686303983209e-01, 1.797693134862e+308, 1.4321e-01, 4.6175e-02, + 2DIAGNOSTIC, 2, -6.687656921880e-01, 1.797693134862e+308, 1.4585e-01, 2.6350e-03, + 2DIAGNOSTIC, 3, -6.709450327115e-01, 1.797693134862e+308, 1.4846e-01, 2.6081e-03, + 2DIAGNOSTIC, 4, -6.752083662348e-01, 1.797693134862e+308, 1.5106e-01, 2.6031e-03, + 2DIAGNOSTIC, 5, -6.812998757308e-01, 1.797693134862e+308, 1.5325e-01, 2.1942e-03, + 2DIAGNOSTIC, 6, -6.874564747040e-01, 1.797693134862e+308, 1.5573e-01, 2.4741e-03, + 2DIAGNOSTIC, 7, -6.900509511377e-01, 1.797693134862e+308, 1.5821e-01, 2.4829e-03, + 2DIAGNOSTIC, 8, -6.930650297935e-01, 1.797693134862e+308, 1.6166e-01, 3.4518e-03, + 2DIAGNOSTIC, 9, -6.932634131598e-01, 1.797693134862e+308, 1.6387e-01, 2.2120e-03, + 2DIAGNOSTIC, 10, -6.941353519171e-01, 2.935083100792e-03, 1.6633e-01, 2.4521e-03, + 2DIAGNOSTIC, 11, -6.958996556549e-01, 2.497381232765e-03, 1.6902e-01, 2.6951e-03, + 2DIAGNOSTIC, 12, -6.972944815730e-01, 1.962193954689e-03, 1.7173e-01, 2.7070e-03, + 2DIAGNOSTIC, 13, -6.973639556257e-01, 1.405311540144e-03, 1.7411e-01, 2.3830e-03, + 2DIAGNOSTIC, 14, -6.979853144248e-01, 9.454102681723e-04, 1.7713e-01, 3.0160e-03, + 2DIAGNOSTIC, 15, -6.987951209215e-01, 6.488851309411e-04, 1.7981e-01, 2.6851e-03, + 2DIAGNOSTIC, 16, -6.990197825080e-01, 4.932264088689e-04, 1.8253e-01, 2.7161e-03, + 2DIAGNOSTIC, 17, -6.991450922083e-01, 3.748857742871e-04, 1.8521e-01, 2.6860e-03, + 2DIAGNOSTIC, 18, -6.991990362816e-01, 3.065811164188e-04, 1.8790e-01, 2.6860e-03, + 2DIAGNOSTIC, 19, -6.993040943969e-01, 2.241115652603e-04, 1.9059e-01, 2.6901e-03, + 2DIAGNOSTIC, 20, -6.992143311149e-01, 1.444204292091e-04, 1.9359e-01, 2.9960e-03, + 2DIAGNOSTIC, 21, -6.993268714386e-01, 9.527027884686e-05, 1.9630e-01, 2.7089e-03, + 2DIAGNOSTIC, 22, -6.991545414959e-01, 6.498857494957e-05, 1.9896e-01, 2.6689e-03, + 2DIAGNOSTIC, 23, -6.992075724683e-01, 3.359374772502e-05, 2.0143e-01, 2.4688e-03, + 2DIAGNOSTIC, 24, -6.991262629893e-01, 1.069706059054e-05, 2.0469e-01, 3.2561e-03, + 2DIAGNOSTIC, 25, -6.992727438150e-01, 4.428112624778e-06, 2.0803e-01, 3.3381e-03, + 2DIAGNOSTIC, 26, -6.992685542595e-01, 1.729873107863e-06, 2.1067e-01, 2.6381e-03, + 2DIAGNOSTIC, 27, -6.993892890668e-01, 2.942816899366e-06, 2.1366e-01, 2.9979e-03, + 2DIAGNOSTIC, 28, -6.993023090196e-01, 3.370516768249e-06, 2.1637e-01, 2.7082e-03, + 2DIAGNOSTIC, 29, -6.992645759040e-01, 4.589895330274e-06, 2.1871e-01, 2.3360e-03, + 2DIAGNOSTIC, 30, -6.991715058585e-01, 2.836979901721e-06, 2.2103e-01, 2.3220e-03, + 2DIAGNOSTIC, 31, -6.992940283899e-01, 4.192708595703e-06, 2.2332e-01, 2.2938e-03, + 2DIAGNOSTIC, 32, -6.994129936582e-01, 4.390282970113e-06, 2.2562e-01, 2.2960e-03, + 2DIAGNOSTIC, 33, -6.997305892725e-01, 8.876323966810e-06, 2.2823e-01, 2.6140e-03, + 2DIAGNOSTIC, 34, -6.999461804664e-01, 1.388342859331e-05, 2.3055e-01, 2.3160e-03, + 2DIAGNOSTIC, 35, -7.014769432250e-01, 3.700084246331e-05, 2.3315e-01, 2.5959e-03, + 2DIAGNOSTIC, 36, -7.022730830963e-01, 6.389910448168e-05, 2.3643e-01, 3.2821e-03, + 2DIAGNOSTIC, 37, -7.022929999846e-01, 8.484426642328e-05, 2.3915e-01, 2.7189e-03, + 2DIAGNOSTIC, 38, -7.025635355500e-01, 9.896967685676e-05, 2.4144e-01, 2.2972e-03, + 2DIAGNOSTIC, 39, -7.036650517152e-01, 1.141717495680e-04, 2.4407e-01, 2.6221e-03, + 2DIAGNOSTIC, 40, -7.037803757671e-01, 1.174685941093e-04, 2.4644e-01, 2.3770e-03, + 2DIAGNOSTIC, 41, -7.037998773397e-01, 1.108787681077e-04, 2.4856e-01, 2.1200e-03, + 2DIAGNOSTIC, 42, -7.037350533771e-01, 9.494367531799e-05, 2.5105e-01, 2.4891e-03, + 2DIAGNOSTIC, 43, -7.037424111497e-01, 7.404313922978e-05, 2.5467e-01, 3.6199e-03, + 2DIAGNOSTIC, 44, -7.035857490516e-01, 4.713817208864e-05, 2.5706e-01, 2.3880e-03, + 2DIAGNOSTIC, 45, -7.033497512892e-01, 2.856047583282e-05, 2.5942e-01, 2.3642e-03, + 2DIAGNOSTIC, 46, -7.033640316397e-01, 1.554750309951e-05, 2.6175e-01, 2.3251e-03, + 2DIAGNOSTIC, 47, -7.033814701666e-01, 2.019234116527e-06, 2.6411e-01, 2.3649e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.410997791933e-01, 1.797693134862e+308, 3.3086e-01, 6.6745e-02, + 2DIAGNOSTIC, 2, -5.412901486320e-01, 1.797693134862e+308, 3.4561e-01, 1.4749e-02, + 2DIAGNOSTIC, 3, -5.416191754595e-01, 1.797693134862e+308, 3.5750e-01, 1.1897e-02, + 2DIAGNOSTIC, 4, -5.422765913846e-01, 1.797693134862e+308, 3.6958e-01, 1.2078e-02, + 2DIAGNOSTIC, 5, -5.429593891902e-01, 1.797693134862e+308, 3.8199e-01, 1.2412e-02, + 2DIAGNOSTIC, 6, -5.435540151293e-01, 1.797693134862e+308, 3.9693e-01, 1.4939e-02, + 2DIAGNOSTIC, 7, -5.440497938714e-01, 1.797693134862e+308, 4.1484e-01, 1.7903e-02, + 2DIAGNOSTIC, 8, -5.441336073000e-01, 1.797693134862e+308, 4.2661e-01, 1.1772e-02, + 2DIAGNOSTIC, 9, -5.443126175714e-01, 1.797693134862e+308, 4.3864e-01, 1.2035e-02, + 2DIAGNOSTIC, 10, -5.446307140529e-01, 4.670758878739e-04, 4.5108e-01, 1.2437e-02, + 2DIAGNOSTIC, 11, -5.449628581116e-01, 4.007098475930e-04, 4.6283e-01, 1.1750e-02, + 2DIAGNOSTIC, 12, -5.453743303386e-01, 3.358161781482e-04, 4.7447e-01, 1.1640e-02, + 2DIAGNOSTIC, 13, -5.460190492665e-01, 2.897086252882e-04, 4.8782e-01, 1.3352e-02, + 2DIAGNOSTIC, 14, -5.467713497157e-01, 2.761054726060e-04, 5.0532e-01, 1.7497e-02, + 2DIAGNOSTIC, 15, -5.469577899665e-01, 2.687681778317e-04, 5.1833e-01, 1.3013e-02, + 2DIAGNOSTIC, 16, -5.471051841821e-01, 2.619824218964e-04, 5.3222e-01, 1.3892e-02, + 2DIAGNOSTIC, 17, -5.471823017594e-01, 2.498060860270e-04, 5.4440e-01, 1.2175e-02, + 2DIAGNOSTIC, 18, -5.472955429402e-01, 2.215561788241e-04, 5.5813e-01, 1.3728e-02, + 2DIAGNOSTIC, 19, -5.473898382350e-01, 1.830492686788e-04, 5.7193e-01, 1.3803e-02, + 2DIAGNOSTIC, 20, -5.473955924999e-01, 1.399918680272e-04, 5.9116e-01, 1.9227e-02, + 2DIAGNOSTIC, 21, -5.474081066904e-01, 9.691204846918e-05, 6.0922e-01, 1.8057e-02, + 2DIAGNOSTIC, 22, -5.474076603908e-01, 5.842710189725e-05, 6.2318e-01, 1.3970e-02, + 2DIAGNOSTIC, 23, -5.473958479548e-01, 3.188310914902e-05, 6.3857e-01, 1.5389e-02, + 2DIAGNOSTIC, 24, -5.473921981542e-01, 2.087868323107e-05, 6.5164e-01, 1.3065e-02, + 2DIAGNOSTIC, 25, -5.473884064606e-01, 1.268865391773e-05, 6.6388e-01, 1.2246e-02, + 2DIAGNOSTIC, 26, -5.473801264763e-01, 6.852584546163e-06, 6.7685e-01, 1.2967e-02, + 2DIAGNOSTIC, 27, -5.473823925577e-01, 2.416172870993e-06, 6.9031e-01, 1.3456e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.590537303473e-01, 1.797693134862e+308, 8.8170e-01, 1.9139e-01, + Elapsed time (stage 1): 9.0733e-01 + + +Total elapsed time: 2.0227e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:21:26 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 48 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 67 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 88.89% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 88.89% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[16972 1627 1342 5155 2196 4847 1275 13256 1085 6127 1766 1528 + 4316 1093 1203 3369 1772 294 2081 826 796 337 575 548 + 845 376 439 567 170 343 209 158 0 225 131 0 + 0 0 216 205 0 0 0 0 0 0 0 0] +[102401 29914 35499 25734 41416 34540 32186 25350 22932 21072 + 13302 13588 27488 13046 19171 11846 8302 10292 8986 7036 + 10172 11460 7933 6388 3278 2972 7414 6873 5553 2937 + 2342 2765 1838 4762 2005 2043 707 2367 2232 1632 + 575 1682 886 1729 252 1505 1117 1006] +[ 0 0 143 157 277 1119 0 304 4088 370 242 2511 + 0 0 331 2532 7591 10413 475 0 258 1033 5148 8453 + 381 135 743 1434 1916 9232 1200 1181 0 455 442 979 + 0 725 0 152 0 1816 797 560 289 0 9432 873] +[ 2643 1568 1753 8682 6734 12996 3205 5626 2024 5591 3456 10812 + 660 1270 2562 3773 574 4069 4837 867 2171 14593 641 65979 + 7573 7008 10393 14714 21677 71049 7049 32138 1676 1952 4351 8222 + 1298 11745 5209 2765 13024 10431 6264 32579 2401 702 1096 42064] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:30:05 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:30:09 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:33:50 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:33:50 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:33:50 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:34:00 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:34:03 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC008 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:34:14 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:34:38 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:36:23 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:36:24 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:37:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:37:41 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55cb679a4d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [76.0585, 131.949, -121.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cb6781b730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5a3caf4010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55cb679a8020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.351, 60.3703, -104.161] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cb679ae0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5a39435010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55cb679be840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [76.0585, 131.949, -121.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cb679aa890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5a34761010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55cb679c23e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.351, 60.3703, -104.161] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55cb679b1130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f5a310a2010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.275769068483e-01, 1.797693134862e+308, 2.3922e-01, 2.3922e-01, + 2DIAGNOSTIC, 2, -4.291033955656e-01, 1.797693134862e+308, 2.4057e-01, 1.3540e-03, + 2DIAGNOSTIC, 3, -4.313089941005e-01, 1.797693134862e+308, 2.4196e-01, 1.3819e-03, + 2DIAGNOSTIC, 4, -4.339627420704e-01, 1.797693134862e+308, 2.4328e-01, 1.3289e-03, + 2DIAGNOSTIC, 5, -4.404017339302e-01, 1.797693134862e+308, 2.4461e-01, 1.3280e-03, + 2DIAGNOSTIC, 6, -4.523024131633e-01, 1.797693134862e+308, 2.4602e-01, 1.4060e-03, + 2DIAGNOSTIC, 7, -4.630279976498e-01, 1.797693134862e+308, 2.4736e-01, 1.3461e-03, + 2DIAGNOSTIC, 8, -5.007540293176e-01, 1.797693134862e+308, 2.4938e-01, 2.0161e-03, + 2DIAGNOSTIC, 9, -5.037977299264e-01, 1.797693134862e+308, 2.5102e-01, 1.6401e-03, + 2DIAGNOSTIC, 10, -5.048374059608e-01, 1.281697236522e-02, 2.5325e-01, 2.2249e-03, + 2DIAGNOSTIC, 11, -5.059163605305e-01, 1.228129034352e-02, 2.5519e-01, 1.9431e-03, + 2DIAGNOSTIC, 12, -5.078045717381e-01, 1.090626436119e-02, 2.5710e-01, 1.9090e-03, + 2DIAGNOSTIC, 13, -5.081313204364e-01, 8.875308447307e-03, 2.5876e-01, 1.6649e-03, + 2DIAGNOSTIC, 14, -5.080907445299e-01, 6.465923195901e-03, 2.6067e-01, 1.9028e-03, + 2DIAGNOSTIC, 15, -5.087383256598e-01, 4.111521912546e-03, 2.6212e-01, 1.4501e-03, + 2DIAGNOSTIC, 16, -5.098191818975e-01, 2.184426389740e-03, 2.6380e-01, 1.6880e-03, + 2DIAGNOSTIC, 17, -5.139815911933e-01, 7.795258369383e-04, 2.6549e-01, 1.6909e-03, + 2DIAGNOSTIC, 18, -5.148205328398e-01, 7.294310491815e-04, 2.6747e-01, 1.9779e-03, + 2DIAGNOSTIC, 19, -5.146238268667e-01, 7.076424263134e-04, 2.6917e-01, 1.7021e-03, + 2DIAGNOSTIC, 20, -5.156305129877e-01, 6.846459459646e-04, 2.7103e-01, 1.8549e-03, + 2DIAGNOSTIC, 21, -5.159041987226e-01, 6.352620719011e-04, 2.7251e-01, 1.4801e-03, + 2DIAGNOSTIC, 22, -5.172145971478e-01, 6.142992605430e-04, 2.7394e-01, 1.4310e-03, + 2DIAGNOSTIC, 23, -5.192198559547e-01, 5.964040934264e-04, 2.7557e-01, 1.6248e-03, + 2DIAGNOSTIC, 24, -5.197069847761e-01, 5.357480493413e-04, 2.7743e-01, 1.8649e-03, + 2DIAGNOSTIC, 25, -5.202297073909e-01, 4.583102577209e-04, 2.7975e-01, 2.3150e-03, + 2DIAGNOSTIC, 26, -5.199808800212e-01, 3.604841025623e-04, 2.8143e-01, 1.6890e-03, + 2DIAGNOSTIC, 27, -5.203497068797e-01, 3.327397266596e-04, 2.8285e-01, 1.4150e-03, + 2DIAGNOSTIC, 28, -5.212202367294e-01, 3.104591228072e-04, 2.8429e-01, 1.4429e-03, + 2DIAGNOSTIC, 29, -5.215303654341e-01, 2.619605127748e-04, 2.8585e-01, 1.5559e-03, + 2DIAGNOSTIC, 30, -5.220491616183e-01, 2.220839988807e-04, 2.8738e-01, 1.5340e-03, + 2DIAGNOSTIC, 31, -5.221936537232e-01, 1.717069838769e-04, 2.8916e-01, 1.7779e-03, + 2DIAGNOSTIC, 32, -5.225160579468e-01, 1.368107948960e-04, 2.9097e-01, 1.8120e-03, + 2DIAGNOSTIC, 33, -5.225852928325e-01, 1.266091137788e-04, 2.9267e-01, 1.6961e-03, + 2DIAGNOSTIC, 34, -5.219190951322e-01, 1.018311765556e-04, 2.9416e-01, 1.4961e-03, + 2DIAGNOSTIC, 35, -5.217123403202e-01, 7.474876008803e-05, 2.9583e-01, 1.6680e-03, + 2DIAGNOSTIC, 36, -5.214785114670e-01, 3.458908633549e-05, 2.9767e-01, 1.8370e-03, + 2DIAGNOSTIC, 37, -5.216600782641e-01, 1.528302098472e-06, 2.9910e-01, 1.4310e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.103116635897e-01, 1.797693134862e+308, 5.5428e-01, 2.5518e-01, + 2DIAGNOSTIC, 2, -4.093367696168e-01, 1.797693134862e+308, 5.5657e-01, 2.2879e-03, + 2DIAGNOSTIC, 3, -4.119497255987e-01, 1.797693134862e+308, 5.5902e-01, 2.4500e-03, + 2DIAGNOSTIC, 4, -4.192736369724e-01, 1.797693134862e+308, 5.6251e-01, 3.4869e-03, + 2DIAGNOSTIC, 5, -4.254022849114e-01, 1.797693134862e+308, 5.6513e-01, 2.6250e-03, + 2DIAGNOSTIC, 6, -4.313300279147e-01, 1.797693134862e+308, 5.6747e-01, 2.3398e-03, + 2DIAGNOSTIC, 7, -4.401601781016e-01, 1.797693134862e+308, 5.7107e-01, 3.6030e-03, + 2DIAGNOSTIC, 8, -4.412605886428e-01, 1.797693134862e+308, 5.7361e-01, 2.5351e-03, + 2DIAGNOSTIC, 9, -4.423104484589e-01, 1.797693134862e+308, 5.7680e-01, 3.1931e-03, + 2DIAGNOSTIC, 10, -4.423476722378e-01, 6.131511054822e-03, 5.7957e-01, 2.7719e-03, + 2DIAGNOSTIC, 11, -4.423539076570e-01, 5.101904982523e-03, 5.8202e-01, 2.4431e-03, + 2DIAGNOSTIC, 12, -4.423699177106e-01, 3.737600898427e-03, 5.8451e-01, 2.4948e-03, + 2DIAGNOSTIC, 13, -4.423109804472e-01, 2.377149226320e-03, 5.8733e-01, 2.8210e-03, + 2DIAGNOSTIC, 14, -4.422862707384e-01, 1.344798913181e-03, 5.8971e-01, 2.3789e-03, + 2DIAGNOSTIC, 15, -4.423568811103e-01, 6.003799638925e-04, 5.9217e-01, 2.4600e-03, + 2DIAGNOSTIC, 16, -4.423549539415e-01, 1.300678247124e-04, 5.9493e-01, 2.7552e-03, + 2DIAGNOSTIC, 17, -4.424705958592e-01, 4.872509362290e-05, 5.9843e-01, 3.5050e-03, + 2DIAGNOSTIC, 18, -4.431654875794e-01, 3.646442231980e-05, 6.0296e-01, 4.5259e-03, + 2DIAGNOSTIC, 19, -4.433102944655e-01, 6.278409287985e-05, 6.0565e-01, 2.6960e-03, + 2DIAGNOSTIC, 20, -4.433648804945e-01, 8.388338996284e-05, 6.0885e-01, 3.1931e-03, + 2DIAGNOSTIC, 21, -4.432492131832e-01, 9.216790594107e-05, 6.1185e-01, 3.0069e-03, + 2DIAGNOSTIC, 22, -4.431518657880e-01, 8.894895330890e-05, 6.1457e-01, 2.7168e-03, + 2DIAGNOSTIC, 23, -4.431693530782e-01, 7.640918109151e-05, 6.1691e-01, 2.3391e-03, + 2DIAGNOSTIC, 24, -4.433095066331e-01, 6.079287178657e-05, 6.1927e-01, 2.3570e-03, + 2DIAGNOSTIC, 25, -4.448104718457e-01, 8.193615330763e-05, 6.2251e-01, 3.2439e-03, + 2DIAGNOSTIC, 26, -4.452934163130e-01, 1.050856960227e-04, 6.2482e-01, 2.3072e-03, + 2DIAGNOSTIC, 27, -4.456060156103e-01, 1.268084203705e-04, 6.2842e-01, 3.5980e-03, + 2DIAGNOSTIC, 28, -4.458316144442e-01, 1.568168169775e-04, 6.3068e-01, 2.2640e-03, + 2DIAGNOSTIC, 29, -4.460401992404e-01, 1.777653988033e-04, 6.3319e-01, 2.5060e-03, + 2DIAGNOSTIC, 30, -4.470305699406e-01, 2.026686561282e-04, 6.3546e-01, 2.2781e-03, + 2DIAGNOSTIC, 31, -4.500871475770e-01, 2.676194103712e-04, 6.3870e-01, 3.2401e-03, + 2DIAGNOSTIC, 32, -4.545024590314e-01, 3.893033602511e-04, 6.4129e-01, 2.5818e-03, + 2DIAGNOSTIC, 33, -4.553756629832e-01, 4.828737780399e-04, 6.4427e-01, 2.9860e-03, + 2DIAGNOSTIC, 34, -4.554612346186e-01, 5.300504328692e-04, 6.4656e-01, 2.2910e-03, + 2DIAGNOSTIC, 35, -4.555544988732e-01, 5.544220806953e-04, 6.4910e-01, 2.5389e-03, + 2DIAGNOSTIC, 36, -4.557586204160e-01, 5.359909132987e-04, 6.5134e-01, 2.2340e-03, + 2DIAGNOSTIC, 37, -4.558661222679e-01, 4.736201394291e-04, 6.5392e-01, 2.5799e-03, + 2DIAGNOSTIC, 38, -4.565345202817e-01, 3.851976018322e-04, 6.5794e-01, 4.0231e-03, + 2DIAGNOSTIC, 39, -4.567648710167e-01, 2.730936483950e-04, 6.6073e-01, 2.7890e-03, + 2DIAGNOSTIC, 40, -4.569229923561e-01, 1.589568986333e-04, 6.6353e-01, 2.8069e-03, + 2DIAGNOSTIC, 41, -4.571004755649e-01, 8.438854758920e-05, 6.6640e-01, 2.8691e-03, + 2DIAGNOSTIC, 42, -4.570587056621e-01, 7.187091630606e-05, 6.6862e-01, 2.2171e-03, + 2DIAGNOSTIC, 43, -4.570227246143e-01, 6.557386858401e-05, 6.7082e-01, 2.2039e-03, + 2DIAGNOSTIC, 44, -4.569822381887e-01, 5.400702572398e-05, 6.7311e-01, 2.2810e-03, + 2DIAGNOSTIC, 45, -4.570201040586e-01, 3.977415682015e-05, 6.7538e-01, 2.2750e-03, + 2DIAGNOSTIC, 46, -4.570640541507e-01, 2.593627449502e-05, 6.7770e-01, 2.3220e-03, + 2DIAGNOSTIC, 47, -4.571375165473e-01, 1.254565698569e-05, 6.8036e-01, 2.6538e-03, + 2DIAGNOSTIC, 48, -4.571994536202e-01, 8.288472527887e-06, 6.8263e-01, 2.2769e-03, + 2DIAGNOSTIC, 49, -4.572629018644e-01, 7.275473020103e-06, 6.8526e-01, 2.6281e-03, + 2DIAGNOSTIC, 50, -4.575138934154e-01, 1.080586402434e-05, 6.8790e-01, 2.6360e-03, + 2DIAGNOSTIC, 51, -4.605760050004e-01, 5.363988069038e-05, 6.9119e-01, 3.2959e-03, + 2DIAGNOSTIC, 52, -4.613522767005e-01, 9.765949747676e-05, 6.9442e-01, 3.2289e-03, + 2DIAGNOSTIC, 53, -4.614061589761e-01, 1.311058534484e-04, 6.9732e-01, 2.8932e-03, + 2DIAGNOSTIC, 54, -4.616924821241e-01, 1.543094777892e-04, 6.9960e-01, 2.2869e-03, + 2DIAGNOSTIC, 55, -4.617152913486e-01, 1.624722661426e-04, 7.0237e-01, 2.7719e-03, + 2DIAGNOSTIC, 56, -4.616897248550e-01, 1.544089749543e-04, 7.0465e-01, 2.2800e-03, + 2DIAGNOSTIC, 57, -4.618242071144e-01, 1.340016439024e-04, 7.0733e-01, 2.6710e-03, + 2DIAGNOSTIC, 58, -4.622720125604e-01, 1.075439867727e-04, 7.0960e-01, 2.2719e-03, + 2DIAGNOSTIC, 59, -4.625331335263e-01, 7.549676821208e-05, 7.1211e-01, 2.5160e-03, + 2DIAGNOSTIC, 60, -4.627751158681e-01, 4.172470164960e-05, 7.1458e-01, 2.4650e-03, + 2DIAGNOSTIC, 61, -4.628226093551e-01, 3.730561830471e-05, 7.1674e-01, 2.1641e-03, + 2DIAGNOSTIC, 62, -4.629801687730e-01, 3.908167728370e-05, 7.1922e-01, 2.4810e-03, + 2DIAGNOSTIC, 63, -4.636188205594e-01, 4.387460888367e-05, 7.2154e-01, 2.3201e-03, + 2DIAGNOSTIC, 64, -4.658109338558e-01, 6.863041151911e-05, 7.2392e-01, 2.3770e-03, + 2DIAGNOSTIC, 65, -4.778207938731e-01, 2.025590036835e-04, 7.2653e-01, 2.6140e-03, + 2DIAGNOSTIC, 66, -4.834921300842e-01, 3.637861456905e-04, 7.2946e-01, 2.9290e-03, + 2DIAGNOSTIC, 67, -4.838082956284e-01, 4.891892443402e-04, 7.3214e-01, 2.6810e-03, + 2DIAGNOSTIC, 68, -4.875986691531e-01, 6.049285334848e-04, 7.3562e-01, 3.4771e-03, + 2DIAGNOSTIC, 69, -4.890633545492e-01, 6.736381748477e-04, 7.3804e-01, 2.4199e-03, + 2DIAGNOSTIC, 70, -4.902174086913e-01, 6.860011264425e-04, 7.4086e-01, 2.8141e-03, + 2DIAGNOSTIC, 71, -4.913575452028e-01, 6.419320091862e-04, 7.4367e-01, 2.8169e-03, + 2DIAGNOSTIC, 72, -4.921829668572e-01, 5.474010790816e-04, 7.4884e-01, 5.1680e-03, + 2DIAGNOSTIC, 73, -4.924980393823e-01, 4.121202849125e-04, 7.5113e-01, 2.2891e-03, + 2DIAGNOSTIC, 74, -4.925860872459e-01, 2.579076069179e-04, 7.5366e-01, 2.5320e-03, + 2DIAGNOSTIC, 75, -4.926778603806e-01, 1.832092247508e-04, 7.5588e-01, 2.2149e-03, + 2DIAGNOSTIC, 76, -4.928044170192e-01, 1.409330470249e-04, 7.5819e-01, 2.3129e-03, + 2DIAGNOSTIC, 77, -4.927888441037e-01, 8.797888044384e-05, 7.6053e-01, 2.3382e-03, + 2DIAGNOSTIC, 78, -4.928706026950e-01, 5.884526098386e-05, 7.6256e-01, 2.0339e-03, + 2DIAGNOSTIC, 79, -4.927702703215e-01, 3.554342326428e-05, 7.6497e-01, 2.4059e-03, + 2DIAGNOSTIC, 80, -4.927499799653e-01, 1.816264174196e-05, 7.6704e-01, 2.0700e-03, + 2DIAGNOSTIC, 81, -4.926373740956e-01, 7.254720529124e-06, 7.6929e-01, 2.2571e-03, + 2DIAGNOSTIC, 82, -4.927136931166e-01, 2.752526089590e-06, 7.7185e-01, 2.5570e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.653809184313e-01, 1.797693134862e+308, 1.0481e+00, 2.7628e-01, + 2DIAGNOSTIC, 2, -3.664192953723e-01, 1.797693134862e+308, 1.0610e+00, 1.2843e-02, + 2DIAGNOSTIC, 3, -3.679917376192e-01, 1.797693134862e+308, 1.0739e+00, 1.2915e-02, + 2DIAGNOSTIC, 4, -3.702867306292e-01, 1.797693134862e+308, 1.0865e+00, 1.2620e-02, + 2DIAGNOSTIC, 5, -3.722285869822e-01, 1.797693134862e+308, 1.0989e+00, 1.2422e-02, + 2DIAGNOSTIC, 6, -3.740967437741e-01, 1.797693134862e+308, 1.1117e+00, 1.2790e-02, + 2DIAGNOSTIC, 7, -3.752887978989e-01, 1.797693134862e+308, 1.1305e+00, 1.8762e-02, + 2DIAGNOSTIC, 8, -3.762710968855e-01, 1.797693134862e+308, 1.1431e+00, 1.2620e-02, + 2DIAGNOSTIC, 9, -3.767868009540e-01, 1.797693134862e+308, 1.1577e+00, 1.4542e-02, + 2DIAGNOSTIC, 10, -3.781916913321e-01, 2.318188981746e-03, 1.1703e+00, 1.2642e-02, + 2DIAGNOSTIC, 11, -3.808214466074e-01, 2.077850236097e-03, 1.1829e+00, 1.2648e-02, + 2DIAGNOSTIC, 12, -3.878963137858e-01, 2.199082503983e-03, 1.1954e+00, 1.2416e-02, + 2DIAGNOSTIC, 13, -3.938790164597e-01, 2.529574341830e-03, 1.2098e+00, 1.4485e-02, + 2DIAGNOSTIC, 14, -3.953417583221e-01, 2.779522717705e-03, 1.2264e+00, 1.6578e-02, + 2DIAGNOSTIC, 15, -4.016792753771e-01, 3.157283964713e-03, 1.2393e+00, 1.2831e-02, + 2DIAGNOSTIC, 16, -4.040149417437e-01, 3.384691974777e-03, 1.2521e+00, 1.2866e-02, + 2DIAGNOSTIC, 17, -4.058143021766e-01, 3.398416685924e-03, 1.2693e+00, 1.7186e-02, + 2DIAGNOSTIC, 18, -4.099232726501e-01, 3.305305199626e-03, 1.2823e+00, 1.2995e-02, + 2DIAGNOSTIC, 19, -4.122677300045e-01, 3.026960553342e-03, 1.2976e+00, 1.5257e-02, + 2DIAGNOSTIC, 20, -4.180964141255e-01, 2.762100555762e-03, 1.3144e+00, 1.6840e-02, + 2DIAGNOSTIC, 21, -4.294463075031e-01, 2.743214140319e-03, 1.3279e+00, 1.3517e-02, + 2DIAGNOSTIC, 22, -4.585394213576e-01, 3.644880796261e-03, 1.3424e+00, 1.4454e-02, + 2DIAGNOSTIC, 23, -5.192248729044e-01, 6.143723766433e-03, 1.3625e+00, 2.0160e-02, + 2DIAGNOSTIC, 24, -5.223878867398e-01, 7.897711915719e-03, 1.3748e+00, 1.2246e-02, + 2DIAGNOSTIC, 25, -5.281854699427e-01, 9.100008269783e-03, 1.3894e+00, 1.4662e-02, + 2DIAGNOSTIC, 26, -5.293660443044e-01, 9.445135165518e-03, 1.4036e+00, 1.4120e-02, + 2DIAGNOSTIC, 27, -5.300106430664e-01, 8.921858316820e-03, 1.4181e+00, 1.4534e-02, + 2DIAGNOSTIC, 28, -5.303403682658e-01, 7.698355743546e-03, 1.4369e+00, 1.8838e-02, + 2DIAGNOSTIC, 29, -5.303950697109e-01, 5.918847619960e-03, 1.4490e+00, 1.2103e-02, + 2DIAGNOSTIC, 30, -5.305428456575e-01, 3.883893845584e-03, 1.4613e+00, 1.2238e-02, + 2DIAGNOSTIC, 31, -5.305923830810e-01, 1.886012649291e-03, 1.4752e+00, 1.3893e-02, + 2DIAGNOSTIC, 32, -5.306680737198e-01, 4.264379273818e-04, 1.4891e+00, 1.3976e-02, + 2DIAGNOSTIC, 33, -5.307885885259e-01, 2.313219642182e-04, 1.5033e+00, 1.4145e-02, + 2DIAGNOSTIC, 34, -5.308839063308e-01, 8.744649619528e-05, 1.5151e+00, 1.1862e-02, + 2DIAGNOSTIC, 35, -5.309886728614e-01, 5.310383788596e-05, 1.5276e+00, 1.2438e-02, + 2DIAGNOSTIC, 36, -5.315323797874e-01, 4.642548706726e-05, 1.5435e+00, 1.5968e-02, + 2DIAGNOSTIC, 37, -5.316496165461e-01, 4.859533968903e-05, 1.5658e+00, 2.2207e-02, + 2DIAGNOSTIC, 38, -5.316456412582e-01, 5.159281065505e-05, 1.5795e+00, 1.3747e-02, + 2DIAGNOSTIC, 39, -5.316411291306e-01, 5.050757949576e-05, 1.5914e+00, 1.1921e-02, + 2DIAGNOSTIC, 40, -5.316068014426e-01, 4.654625345376e-05, 1.6051e+00, 1.3715e-02, + 2DIAGNOSTIC, 41, -5.315821498950e-01, 3.872774712507e-05, 1.6168e+00, 1.1626e-02, + 2DIAGNOSTIC, 42, -5.315908294146e-01, 2.892745475180e-05, 1.6289e+00, 1.2101e-02, + 2DIAGNOSTIC, 43, -5.316049529787e-01, 1.900829405307e-05, 1.6411e+00, 1.2224e-02, + 2DIAGNOSTIC, 44, -5.316730244651e-01, 1.023978168186e-05, 1.6532e+00, 1.2067e-02, + 2DIAGNOSTIC, 45, -5.317251207234e-01, 2.957472137487e-06, 1.6651e+00, 1.1900e-02, + 2DIAGNOSTIC, 46, -5.318306259165e-01, 4.433054074559e-06, 1.6772e+00, 1.2141e-02, + 2DIAGNOSTIC, 47, -5.321537429758e-01, 1.118587738570e-05, 1.6898e+00, 1.2608e-02, + 2DIAGNOSTIC, 48, -5.322749550317e-01, 1.800478484622e-05, 1.7177e+00, 2.7859e-02, + 2DIAGNOSTIC, 49, -5.323654370349e-01, 2.394364637167e-05, 1.7322e+00, 1.4534e-02, + 2DIAGNOSTIC, 50, -5.323421277793e-01, 2.674106181733e-05, 1.7471e+00, 1.4927e-02, + 2DIAGNOSTIC, 51, -5.323682390801e-01, 2.696156200309e-05, 1.7592e+00, 1.2104e-02, + 2DIAGNOSTIC, 52, -5.323483247078e-01, 2.447670260629e-05, 1.7714e+00, 1.2136e-02, + 2DIAGNOSTIC, 53, -5.323564529405e-01, 2.004174945308e-05, 1.7837e+00, 1.2334e-02, + 2DIAGNOSTIC, 54, -5.323975082278e-01, 1.518221028864e-05, 1.7960e+00, 1.2286e-02, + 2DIAGNOSTIC, 55, -5.324353524261e-01, 1.012256409755e-05, 1.8082e+00, 1.2170e-02, + 2DIAGNOSTIC, 56, -5.324974264622e-01, 6.067443977711e-06, 1.8221e+00, 1.3994e-02, + 2DIAGNOSTIC, 57, -5.325444650245e-01, 5.484429881714e-06, 1.8364e+00, 1.4257e-02, + 2DIAGNOSTIC, 58, -5.326189698559e-01, 6.436023387402e-06, 1.8562e+00, 1.9763e-02, + 2DIAGNOSTIC, 59, -5.326063550053e-01, 7.568060807296e-06, 1.8700e+00, 1.3803e-02, + 2DIAGNOSTIC, 60, -5.325926005336e-01, 7.624798881764e-06, 1.8819e+00, 1.1944e-02, + 2DIAGNOSTIC, 61, -5.325795844381e-01, 7.144442783415e-06, 1.8961e+00, 1.4182e-02, + 2DIAGNOSTIC, 62, -5.325815470976e-01, 5.875420428972e-06, 1.9079e+00, 1.1765e-02, + 2DIAGNOSTIC, 63, -5.325696507015e-01, 4.091206107417e-06, 1.9197e+00, 1.1827e-02, + 2DIAGNOSTIC, 64, -5.325750314539e-01, 2.460662447034e-06, 1.9315e+00, 1.1851e-02, + 2DIAGNOSTIC, 65, -5.325843464613e-01, 1.128008592033e-06, 1.9453e+00, 1.3766e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.524264643494e-01, 1.797693134862e+308, 2.3676e+00, 4.2225e-01, + 2DIAGNOSTIC, 2, -4.526163078599e-01, 1.797693134862e+308, 2.4516e+00, 8.4038e-02, + 2DIAGNOSTIC, 3, -4.527133916675e-01, 1.797693134862e+308, 2.5412e+00, 8.9584e-02, + 2DIAGNOSTIC, 4, -4.527726546901e-01, 1.797693134862e+308, 2.6242e+00, 8.2973e-02, + 2DIAGNOSTIC, 5, -4.529265985372e-01, 1.797693134862e+308, 2.7152e+00, 9.1094e-02, + 2DIAGNOSTIC, 6, -4.531448914052e-01, 1.797693134862e+308, 2.8292e+00, 1.1394e-01, + 2DIAGNOSTIC, 7, -4.532035634527e-01, 1.797693134862e+308, 2.9412e+00, 1.1206e-01, + 2DIAGNOSTIC, 8, -4.532162209316e-01, 1.797693134862e+308, 3.0754e+00, 1.3420e-01, + 2DIAGNOSTIC, 9, -4.532170351501e-01, 1.797693134862e+308, 3.1502e+00, 7.4772e-02, + 2DIAGNOSTIC, 10, -4.532148202033e-01, 1.226162203172e-04, 3.2385e+00, 8.8281e-02, + 2DIAGNOSTIC, 11, -4.532109685298e-01, 8.786032935441e-05, 3.3350e+00, 9.6512e-02, + 2DIAGNOSTIC, 12, -4.532069571332e-01, 6.092890354827e-05, 3.4308e+00, 9.5772e-02, + 2DIAGNOSTIC, 13, -4.532045913379e-01, 3.761195969380e-05, 3.5141e+00, 8.3359e-02, + 2DIAGNOSTIC, 14, -4.532038710156e-01, 1.701566692565e-05, 3.6139e+00, 9.9789e-02, + 2DIAGNOSTIC, 15, -4.532044724043e-01, 4.059677808241e-06, 3.7153e+00, 1.0134e-01, + Elapsed time (stage 0): 3.8540e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.321676354367e-01, 1.797693134862e+308, 2.0613e-01, 2.0613e-01, + 2DIAGNOSTIC, 2, -7.344255482907e-01, 1.797693134862e+308, 2.0753e-01, 1.4000e-03, + 2DIAGNOSTIC, 3, -7.380299988560e-01, 1.797693134862e+308, 2.0911e-01, 1.5769e-03, + 2DIAGNOSTIC, 4, -7.417994948547e-01, 1.797693134862e+308, 2.1042e-01, 1.3142e-03, + 2DIAGNOSTIC, 5, -7.459307961729e-01, 1.797693134862e+308, 2.1176e-01, 1.3399e-03, + 2DIAGNOSTIC, 6, -7.538441066887e-01, 1.797693134862e+308, 2.1307e-01, 1.3111e-03, + 2DIAGNOSTIC, 7, -7.715506031202e-01, 1.797693134862e+308, 2.1440e-01, 1.3280e-03, + 2DIAGNOSTIC, 8, -7.978605503291e-01, 1.797693134862e+308, 2.1606e-01, 1.6570e-03, + 2DIAGNOSTIC, 9, -8.225694496136e-01, 1.797693134862e+308, 2.1804e-01, 1.9760e-03, + 2DIAGNOSTIC, 10, -8.287059364383e-01, 8.556861083719e-03, 2.1976e-01, 1.7281e-03, + 2DIAGNOSTIC, 11, -8.310210241532e-01, 8.688174126750e-03, 2.2200e-01, 2.2361e-03, + 2DIAGNOSTIC, 12, -8.315765983289e-01, 8.107233380833e-03, 2.2420e-01, 2.1980e-03, + 2DIAGNOSTIC, 13, -8.318061369667e-01, 6.988839427900e-03, 2.2603e-01, 1.8320e-03, + 2DIAGNOSTIC, 14, -8.317639595689e-01, 5.498347707972e-03, 2.2788e-01, 1.8451e-03, + 2DIAGNOSTIC, 15, -8.316039103356e-01, 3.818642470042e-03, 2.2958e-01, 1.7040e-03, + 2DIAGNOSTIC, 16, -8.316910224625e-01, 2.194047181193e-03, 2.3121e-01, 1.6341e-03, + 2DIAGNOSTIC, 17, -8.320507055615e-01, 9.412482467647e-04, 2.3289e-01, 1.6780e-03, + 2DIAGNOSTIC, 18, -8.343223134435e-01, 3.024886283291e-04, 2.3502e-01, 2.1281e-03, + 2DIAGNOSTIC, 19, -8.357969822187e-01, 1.935029409795e-04, 2.3666e-01, 1.6398e-03, + 2DIAGNOSTIC, 20, -8.347116497962e-01, 1.667914847491e-04, 2.3846e-01, 1.8041e-03, + 2DIAGNOSTIC, 21, -8.353062686610e-01, 1.776926070857e-04, 2.4007e-01, 1.6060e-03, + 2DIAGNOSTIC, 22, -8.355135599379e-01, 1.829289915528e-04, 2.4165e-01, 1.5781e-03, + 2DIAGNOSTIC, 23, -8.365623153913e-01, 1.894381507396e-04, 2.4323e-01, 1.5781e-03, + 2DIAGNOSTIC, 24, -8.369398644935e-01, 1.821922028220e-04, 2.4482e-01, 1.5981e-03, + 2DIAGNOSTIC, 25, -8.334093945326e-01, 1.073943507390e-04, 2.4707e-01, 2.2509e-03, + 2DIAGNOSTIC, 26, -8.348196401864e-01, 5.094878616367e-05, 2.4865e-01, 1.5750e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.350520048909e-01, 1.797693134862e+308, 4.5660e-01, 2.0795e-01, + 2DIAGNOSTIC, 2, -7.346302572648e-01, 1.797693134862e+308, 4.5886e-01, 2.2581e-03, + 2DIAGNOSTIC, 3, -7.357604481773e-01, 1.797693134862e+308, 4.6163e-01, 2.7699e-03, + 2DIAGNOSTIC, 4, -7.369865172690e-01, 1.797693134862e+308, 4.6406e-01, 2.4362e-03, + 2DIAGNOSTIC, 5, -7.374359181527e-01, 1.797693134862e+308, 4.6639e-01, 2.3320e-03, + 2DIAGNOSTIC, 6, -7.374503711977e-01, 1.797693134862e+308, 4.6876e-01, 2.3601e-03, + 2DIAGNOSTIC, 7, -7.376601355175e-01, 1.797693134862e+308, 4.7113e-01, 2.3780e-03, + 2DIAGNOSTIC, 8, -7.383951792962e-01, 1.797693134862e+308, 4.7482e-01, 3.6840e-03, + 2DIAGNOSTIC, 9, -7.383753956814e-01, 1.797693134862e+308, 4.7706e-01, 2.2461e-03, + 2DIAGNOSTIC, 10, -7.382861337314e-01, 3.376284811635e-04, 4.7923e-01, 2.1670e-03, + 2DIAGNOSTIC, 11, -7.381957002226e-01, 2.563013085270e-04, 4.8174e-01, 2.5139e-03, + 2DIAGNOSTIC, 12, -7.379058825125e-01, 1.424758031862e-04, 4.8413e-01, 2.3901e-03, + 2DIAGNOSTIC, 13, -7.377781237598e-01, 6.218835394267e-05, 4.8625e-01, 2.1110e-03, + 2DIAGNOSTIC, 14, -7.376773134035e-01, 1.858778313547e-05, 4.8837e-01, 2.1260e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.062625913427e-01, 1.797693134862e+308, 7.3902e-01, 2.5064e-01, + 2DIAGNOSTIC, 2, -6.075082249803e-01, 1.797693134862e+308, 7.5144e-01, 1.2422e-02, + 2DIAGNOSTIC, 3, -6.092882580140e-01, 1.797693134862e+308, 7.6401e-01, 1.2568e-02, + 2DIAGNOSTIC, 4, -6.112324547460e-01, 1.797693134862e+308, 7.7660e-01, 1.2596e-02, + 2DIAGNOSTIC, 5, -6.136046713852e-01, 1.797693134862e+308, 7.8925e-01, 1.2647e-02, + 2DIAGNOSTIC, 6, -6.147866049231e-01, 1.797693134862e+308, 8.0239e-01, 1.3145e-02, + 2DIAGNOSTIC, 7, -6.175290805325e-01, 1.797693134862e+308, 8.2231e-01, 1.9921e-02, + 2DIAGNOSTIC, 8, -6.182895845670e-01, 1.797693134862e+308, 8.3572e-01, 1.3405e-02, + 2DIAGNOSTIC, 9, -6.205308722368e-01, 1.797693134862e+308, 8.5064e-01, 1.4920e-02, + 2DIAGNOSTIC, 10, -6.220848755951e-01, 1.699496436392e-03, 8.6646e-01, 1.5817e-02, + 2DIAGNOSTIC, 11, -6.223829247383e-01, 1.483005443658e-03, 8.8229e-01, 1.5829e-02, + 2DIAGNOSTIC, 12, -6.223626352998e-01, 1.217743720106e-03, 8.9850e-01, 1.6215e-02, + 2DIAGNOSTIC, 13, -6.224298766421e-01, 9.492943619271e-04, 9.1451e-01, 1.6009e-02, + 2DIAGNOSTIC, 14, -6.224090538829e-01, 6.952279233017e-04, 9.3046e-01, 1.5951e-02, + 2DIAGNOSTIC, 15, -6.224243600604e-01, 4.847431274314e-04, 9.4862e-01, 1.8160e-02, + 2DIAGNOSTIC, 16, -6.224487058059e-01, 2.900284363119e-04, 9.6421e-01, 1.5591e-02, + 2DIAGNOSTIC, 17, -6.224543126867e-01, 1.670756343463e-04, 9.8579e-01, 2.1579e-02, + 2DIAGNOSTIC, 18, -6.224456401797e-01, 6.079338633490e-05, 1.0015e+00, 1.5726e-02, + 2DIAGNOSTIC, 19, -6.224539692432e-01, 1.377724750827e-05, 1.0148e+00, 1.3292e-02, + 2DIAGNOSTIC, 20, -6.224338599343e-01, 5.438096560284e-06, 1.0303e+00, 1.5465e-02, + 2DIAGNOSTIC, 21, -6.224367366513e-01, 4.150076475889e-06, 1.0450e+00, 1.4689e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.192447423978e-01, 1.797693134862e+308, 1.4755e+00, 4.3052e-01, + 2DIAGNOSTIC, 2, -5.196029184960e-01, 1.797693134862e+308, 1.5653e+00, 8.9865e-02, + 2DIAGNOSTIC, 3, -5.200229417848e-01, 1.797693134862e+308, 1.6530e+00, 8.7636e-02, + 2DIAGNOSTIC, 4, -5.206990910637e-01, 1.797693134862e+308, 1.7396e+00, 8.6606e-02, + 2DIAGNOSTIC, 5, -5.217416686601e-01, 1.797693134862e+308, 1.8249e+00, 8.5335e-02, + 2DIAGNOSTIC, 6, -5.232937329689e-01, 1.797693134862e+308, 1.9465e+00, 1.2156e-01, + 2DIAGNOSTIC, 7, -5.237353040285e-01, 1.797693134862e+308, 2.0766e+00, 1.3016e-01, + 2DIAGNOSTIC, 8, -5.240511587885e-01, 1.797693134862e+308, 2.1741e+00, 9.7509e-02, + 2DIAGNOSTIC, 9, -5.244920086175e-01, 1.797693134862e+308, 2.2719e+00, 9.7774e-02, + 2DIAGNOSTIC, 10, -5.263757602202e-01, 8.685694208162e-04, 2.3718e+00, 9.9902e-02, + 2DIAGNOSTIC, 11, -5.304126163796e-01, 9.993848238547e-04, 2.4966e+00, 1.2480e-01, + 2DIAGNOSTIC, 12, -5.309145278241e-01, 1.053756783386e-03, 2.6537e+00, 1.5705e-01, + 2DIAGNOSTIC, 13, -5.310491073321e-01, 1.031081556669e-03, 2.7495e+00, 9.5801e-02, + 2DIAGNOSTIC, 14, -5.314211345950e-01, 9.607117851439e-04, 2.8444e+00, 9.4887e-02, + 2DIAGNOSTIC, 15, -5.317342560830e-01, 8.582699394230e-04, 2.9408e+00, 9.6399e-02, + 2DIAGNOSTIC, 16, -5.319234354316e-01, 7.464200962011e-04, 3.0765e+00, 1.3578e-01, + 2DIAGNOSTIC, 17, -5.320100793167e-01, 5.964049912989e-04, 3.1740e+00, 9.7452e-02, + 2DIAGNOSTIC, 18, -5.324919016233e-01, 4.345120575755e-04, 3.2816e+00, 1.0763e-01, + 2DIAGNOSTIC, 19, -5.327058231931e-01, 2.679415718725e-04, 3.3884e+00, 1.0683e-01, + 2DIAGNOSTIC, 20, -5.327691532872e-01, 1.429101595326e-04, 3.4981e+00, 1.0963e-01, + 2DIAGNOSTIC, 21, -5.329689293792e-01, 1.254164644632e-04, 3.6289e+00, 1.3086e-01, + 2DIAGNOSTIC, 22, -5.332930664022e-01, 1.181985100564e-04, 3.7217e+00, 9.2797e-02, + 2DIAGNOSTIC, 23, -5.333549125261e-01, 1.048530252418e-04, 3.8459e+00, 1.2414e-01, + 2DIAGNOSTIC, 24, -5.333719350899e-01, 9.153698078095e-05, 3.9853e+00, 1.3938e-01, + 2DIAGNOSTIC, 25, -5.333768034017e-01, 7.781058312453e-05, 4.0942e+00, 1.0891e-01, + 2DIAGNOSTIC, 26, -5.333756192875e-01, 6.190683921758e-05, 4.2240e+00, 1.2983e-01, + 2DIAGNOSTIC, 27, -5.333739739247e-01, 4.284691482249e-05, 4.3319e+00, 1.0793e-01, + 2DIAGNOSTIC, 28, -5.333705663482e-01, 3.033177912189e-05, 4.4454e+00, 1.1351e-01, + 2DIAGNOSTIC, 29, -5.333689716086e-01, 1.996511447888e-05, 4.5734e+00, 1.2793e-01, + 2DIAGNOSTIC, 30, -5.333672610687e-01, 9.598144351822e-06, 4.6881e+00, 1.1472e-01, + 2DIAGNOSTIC, 31, -5.333655246560e-01, 2.384886371803e-06, 4.7918e+00, 1.0372e-01, + Elapsed time (stage 1): 4.9202e+00 + + +Total elapsed time: 8.7778e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:37:52 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:37:53 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5613bdfb84f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.351, 60.3703, -104.161] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5613bdfbdfa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7facdf698010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5613bdfb9850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.351, 60.3703, -104.161] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5613bdfb6f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7facdbfd9010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5613bdfd0b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.351, 60.3703, -104.161] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5613bdfbd550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7facd891a010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5613bdfd5d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.351, 60.3703, -104.161] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5613bdfd3c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7facd525b010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x5613bdfd7f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.351, 60.3703, -104.161] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5613bdfd63a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7facd1b9c010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x5613bdfd8540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.351, 60.3703, -104.161] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5613bdfd84d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7facce4dd010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.726358000069e-01, 1.797693134862e+308, 2.2116e-01, 2.2116e-01, + 2DIAGNOSTIC, 2, -5.752257469352e-01, 1.797693134862e+308, 2.2325e-01, 2.0909e-03, + 2DIAGNOSTIC, 3, -5.789622805395e-01, 1.797693134862e+308, 2.2524e-01, 1.9898e-03, + 2DIAGNOSTIC, 4, -5.841862589475e-01, 1.797693134862e+308, 2.2722e-01, 1.9801e-03, + 2DIAGNOSTIC, 5, -5.901261808676e-01, 1.797693134862e+308, 2.2945e-01, 2.2349e-03, + 2DIAGNOSTIC, 6, -5.925306142273e-01, 1.797693134862e+308, 2.3163e-01, 2.1780e-03, + 2DIAGNOSTIC, 7, -5.935025735188e-01, 1.797693134862e+308, 2.3370e-01, 2.0659e-03, + 2DIAGNOSTIC, 8, -5.939588362441e-01, 1.797693134862e+308, 2.3581e-01, 2.1169e-03, + 2DIAGNOSTIC, 9, -5.967592970597e-01, 1.797693134862e+308, 2.3877e-01, 2.9540e-03, + 2DIAGNOSTIC, 10, -5.977736472021e-01, 2.867958087827e-03, 2.4098e-01, 2.2080e-03, + 2DIAGNOSTIC, 11, -5.977016665938e-01, 2.184416019902e-03, 2.4313e-01, 2.1501e-03, + 2DIAGNOSTIC, 12, -5.986279347457e-01, 1.565642915223e-03, 2.4609e-01, 2.9600e-03, + 2DIAGNOSTIC, 13, -5.991633139067e-01, 1.058050982521e-03, 2.5312e-01, 7.0312e-03, + 2DIAGNOSTIC, 14, -5.991633072233e-01, 7.014488733309e-04, 2.5533e-01, 2.2082e-03, + 2DIAGNOSTIC, 15, -5.991633299737e-01, 5.178140582083e-04, 2.5755e-01, 2.2221e-03, + 2DIAGNOSTIC, 16, -5.991633684386e-01, 3.831224935598e-04, 2.5978e-01, 2.2340e-03, + 2DIAGNOSTIC, 17, -5.991634334654e-01, 2.574034037566e-04, 2.6200e-01, 2.2149e-03, + 2DIAGNOSTIC, 18, -5.991635433766e-01, 1.321994144703e-04, 2.6423e-01, 2.2359e-03, + 2DIAGNOSTIC, 19, -5.991637290975e-01, 7.846121738118e-05, 2.6643e-01, 2.1980e-03, + 2DIAGNOSTIC, 20, -5.991640427567e-01, 4.785064606897e-05, 2.6867e-01, 2.2368e-03, + 2DIAGNOSTIC, 21, -5.991645720298e-01, 1.378910690535e-05, 2.7086e-01, 2.1880e-03, + 2DIAGNOSTIC, 22, -5.991654638227e-01, 1.544719680002e-06, 2.7310e-01, 2.2409e-03, + 2DIAGNOSTIC, 23, -5.991669627318e-01, 1.533932535151e-06, 2.7529e-01, 2.1930e-03, + 2DIAGNOSTIC, 24, -5.991694705927e-01, 1.560327340722e-06, 2.7745e-01, 2.1589e-03, + 2DIAGNOSTIC, 25, -5.991736310109e-01, 1.642695892493e-06, 2.7961e-01, 2.1601e-03, + 2DIAGNOSTIC, 26, -5.991804275394e-01, 1.809072252036e-06, 2.8178e-01, 2.1760e-03, + 2DIAGNOSTIC, 27, -5.991910562421e-01, 2.095854543679e-06, 2.8400e-01, 2.2202e-03, + 2DIAGNOSTIC, 28, -5.992078232552e-01, 2.561046167478e-06, 2.8619e-01, 2.1808e-03, + 2DIAGNOSTIC, 29, -5.992338143670e-01, 3.286405981628e-06, 2.8868e-01, 2.4929e-03, + 2DIAGNOSTIC, 30, -5.992584500115e-01, 4.146669486033e-06, 2.9144e-01, 2.7661e-03, + 2DIAGNOSTIC, 31, -5.991626910641e-01, 3.189367315311e-06, 2.9369e-01, 2.2478e-03, + 2DIAGNOSTIC, 32, -5.991911049726e-01, 2.573427106529e-06, 2.9618e-01, 2.4869e-03, + 2DIAGNOSTIC, 33, -5.992014753248e-01, 1.990062742659e-06, 2.9836e-01, 2.1811e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.929077810402e-01, 1.797693134862e+308, 5.4219e-01, 2.4383e-01, + 2DIAGNOSTIC, 2, -4.933495086848e-01, 1.797693134862e+308, 5.5663e-01, 1.4440e-02, + 2DIAGNOSTIC, 3, -4.939656953719e-01, 1.797693134862e+308, 5.7210e-01, 1.5469e-02, + 2DIAGNOSTIC, 4, -4.942398167587e-01, 1.797693134862e+308, 5.9063e-01, 1.8530e-02, + 2DIAGNOSTIC, 5, -4.942705481288e-01, 1.797693134862e+308, 6.0570e-01, 1.5072e-02, + 2DIAGNOSTIC, 6, -4.942517567384e-01, 1.797693134862e+308, 6.2558e-01, 1.9885e-02, + 2DIAGNOSTIC, 7, -4.942464048805e-01, 1.797693134862e+308, 6.4050e-01, 1.4920e-02, + 2DIAGNOSTIC, 8, -4.942391236610e-01, 1.797693134862e+308, 6.5422e-01, 1.3720e-02, + 2DIAGNOSTIC, 9, -4.942352178997e-01, 1.797693134862e+308, 6.6959e-01, 1.5367e-02, + 2DIAGNOSTIC, 10, -4.942412610862e-01, 1.354597851304e-04, 6.8362e-01, 1.4029e-02, + 2DIAGNOSTIC, 11, -4.942141136067e-01, 5.971967793411e-05, 6.9969e-01, 1.6069e-02, + 2DIAGNOSTIC, 12, -4.942278063634e-01, 1.272752944297e-05, 7.1578e-01, 1.6095e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.172080774132e-01, 1.797693134862e+308, 1.1446e+00, 4.2885e-01, + 2DIAGNOSTIC, 2, -4.175619880438e-01, 1.797693134862e+308, 1.2402e+00, 9.5598e-02, + 2DIAGNOSTIC, 3, -4.177170233817e-01, 1.797693134862e+308, 1.3770e+00, 1.3678e-01, + 2DIAGNOSTIC, 4, -4.177366309077e-01, 1.797693134862e+308, 1.4695e+00, 9.2448e-02, + 2DIAGNOSTIC, 5, -4.177407586393e-01, 1.797693134862e+308, 1.5572e+00, 8.7719e-02, + 2DIAGNOSTIC, 6, -4.177491940605e-01, 1.797693134862e+308, 1.6523e+00, 9.5164e-02, + 2DIAGNOSTIC, 7, -4.177979472908e-01, 1.797693134862e+308, 1.7401e+00, 8.7786e-02, + 2DIAGNOSTIC, 8, -4.178772960198e-01, 1.797693134862e+308, 1.8456e+00, 1.0546e-01, + 2DIAGNOSTIC, 9, -4.179065204323e-01, 1.797693134862e+308, 1.9823e+00, 1.3672e-01, + 2DIAGNOSTIC, 10, -4.179064995532e-01, 8.087773674902e-05, 2.1013e+00, 1.1900e-01, + 2DIAGNOSTIC, 11, -4.178949370685e-01, 4.554184372497e-05, 2.2068e+00, 1.0552e-01, + 2DIAGNOSTIC, 12, -4.178850016565e-01, 3.152055942988e-05, 2.3105e+00, 1.0370e-01, + 2DIAGNOSTIC, 13, -4.178823849559e-01, 2.492952996137e-05, 2.3989e+00, 8.8311e-02, + 2DIAGNOSTIC, 14, -4.178805992513e-01, 1.809246956194e-05, 2.4984e+00, 9.9565e-02, + 2DIAGNOSTIC, 15, -4.178781842242e-01, 1.086565005855e-05, 2.6379e+00, 1.3945e-01, + 2DIAGNOSTIC, 16, -4.178788943181e-01, 4.140960405782e-06, 2.7445e+00, 1.0666e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.635486388641e-01, 1.797693134862e+308, 3.9351e+00, 1.1905e+00, + 2DIAGNOSTIC, 2, -3.637558112914e-01, 1.797693134862e+308, 4.4207e+00, 4.8569e-01, + 2DIAGNOSTIC, 3, -3.638162881207e-01, 1.797693134862e+308, 5.1113e+00, 6.9055e-01, + 2DIAGNOSTIC, 4, -3.638195911690e-01, 1.797693134862e+308, 6.1727e+00, 1.0614e+00, + 2DIAGNOSTIC, 5, -3.638191739528e-01, 1.797693134862e+308, 6.9756e+00, 8.0286e-01, + 2DIAGNOSTIC, 6, -3.638192864370e-01, 1.797693134862e+308, 7.5924e+00, 6.1686e-01, + 2DIAGNOSTIC, 7, -3.638192029653e-01, 1.797693134862e+308, 8.1491e+00, 5.5670e-01, + 2DIAGNOSTIC, 8, -3.638191134361e-01, 1.797693134862e+308, 8.7203e+00, 5.7119e-01, + 2DIAGNOSTIC, 9, -3.638188892162e-01, 1.797693134862e+308, 9.2565e+00, 5.3617e-01, + 2DIAGNOSTIC, 10, -3.638188307850e-01, 2.873722574021e-05, 9.8806e+00, 6.2413e-01, + 2DIAGNOSTIC, 11, -3.638187722965e-01, 7.483473174086e-06, 1.0506e+01, 6.2541e-01, + 2DIAGNOSTIC, 12, -3.638184355037e-01, 2.715543913873e-06, 1.1126e+01, 6.1977e-01, + 2DIAGNOSTIC, 13, -3.638185154129e-01, 2.309313124657e-06, 1.1706e+01, 5.8054e-01, + 2DIAGNOSTIC, 14, -3.638183049016e-01, 2.146708006676e-06, 1.2222e+01, 5.1570e-01, + 2DIAGNOSTIC, 15, -3.638182696215e-01, 1.993570218642e-06, 1.2980e+01, 7.5809e-01, + 2DIAGNOSTIC, 16, -3.638182975433e-01, 1.878092953475e-06, 1.3597e+01, 6.1672e-01, + 2DIAGNOSTIC, 17, -3.638180680850e-01, 1.771954758714e-06, 1.4232e+01, 6.3483e-01, + 2DIAGNOSTIC, 18, -3.638175693255e-01, 1.661766049162e-06, 1.4786e+01, 5.5408e-01, + 2DIAGNOSTIC, 19, -3.638175020399e-01, 1.561415522121e-06, 1.5403e+01, 6.1719e-01, + 2DIAGNOSTIC, 20, -3.638173129417e-01, 1.471622526596e-06, 1.5970e+01, 5.6670e-01, + 2DIAGNOSTIC, 21, -3.638173136755e-01, 1.399469035865e-06, 1.6592e+01, 6.2250e-01, + 2DIAGNOSTIC, 22, -3.638171317901e-01, 1.326115353063e-06, 1.7232e+01, 6.3949e-01, + 2DIAGNOSTIC, 23, -3.638169396710e-01, 1.267144530283e-06, 1.7850e+01, 6.1826e-01, + 2DIAGNOSTIC, 24, -3.638167621456e-01, 1.211477408371e-06, 1.8463e+01, 6.1327e-01, + 2DIAGNOSTIC, 25, -3.638166949604e-01, 1.167500656964e-06, 1.9074e+01, 6.1087e-01, + 2DIAGNOSTIC, 26, -3.638166277404e-01, 1.135520951538e-06, 1.9666e+01, 5.9237e-01, + 2DIAGNOSTIC, 27, -3.638164019732e-01, 1.101384995046e-06, 2.0273e+01, 6.0677e-01, + 2DIAGNOSTIC, 28, -3.638163058881e-01, 1.060580222062e-06, 2.0820e+01, 5.4707e-01, + 2DIAGNOSTIC, 29, -3.638159671439e-01, 1.018929241377e-06, 2.1430e+01, 6.0958e-01, + Elapsed time (stage 0): 2.1807e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.761528457153e-01, 1.797693134862e+308, 1.8196e-01, 1.8196e-01, + 2DIAGNOSTIC, 2, -5.770940203442e-01, 1.797693134862e+308, 1.8385e-01, 1.8940e-03, + 2DIAGNOSTIC, 3, -5.782681994321e-01, 1.797693134862e+308, 1.8567e-01, 1.8160e-03, + 2DIAGNOSTIC, 4, -5.793533838574e-01, 1.797693134862e+308, 1.8747e-01, 1.8010e-03, + 2DIAGNOSTIC, 5, -5.803431580133e-01, 1.797693134862e+308, 1.8958e-01, 2.1100e-03, + 2DIAGNOSTIC, 6, -5.811959453317e-01, 1.797693134862e+308, 1.9257e-01, 2.9941e-03, + 2DIAGNOSTIC, 7, -5.816521580997e-01, 1.797693134862e+308, 1.9554e-01, 2.9678e-03, + 2DIAGNOSTIC, 8, -5.820712634834e-01, 1.797693134862e+308, 1.9814e-01, 2.6002e-03, + 2DIAGNOSTIC, 9, -5.820817047480e-01, 1.797693134862e+308, 2.0060e-01, 2.4571e-03, + 2DIAGNOSTIC, 10, -5.821779987410e-01, 7.022296349646e-04, 2.0290e-01, 2.2979e-03, + 2DIAGNOSTIC, 11, -5.821704446915e-01, 5.056185660433e-04, 2.0525e-01, 2.3551e-03, + 2DIAGNOSTIC, 12, -5.823197138270e-01, 3.406758548853e-04, 2.0841e-01, 3.1569e-03, + 2DIAGNOSTIC, 13, -5.823925520020e-01, 2.169955366601e-04, 2.1400e-01, 5.5890e-03, + 2DIAGNOSTIC, 14, -5.823926092022e-01, 1.290322825639e-04, 2.1641e-01, 2.4140e-03, + 2DIAGNOSTIC, 15, -5.823937440008e-01, 7.324517953902e-05, 2.1886e-01, 2.4481e-03, + 2DIAGNOSTIC, 16, -5.823956298577e-01, 4.383396413489e-05, 2.2128e-01, 2.4202e-03, + 2DIAGNOSTIC, 17, -5.823987247206e-01, 2.687896341131e-05, 2.2377e-01, 2.4960e-03, + 2DIAGNOSTIC, 18, -5.824037054609e-01, 2.099651472879e-05, 2.2622e-01, 2.4419e-03, + 2DIAGNOSTIC, 19, -5.824114881205e-01, 1.440248294987e-05, 2.2861e-01, 2.3940e-03, + 2DIAGNOSTIC, 20, -5.824229611428e-01, 9.996787012918e-06, 2.3138e-01, 2.7711e-03, + 2DIAGNOSTIC, 21, -5.824380592342e-01, 5.320541232069e-06, 2.3425e-01, 2.8639e-03, + 2DIAGNOSTIC, 22, -5.824555814112e-01, 4.370360588049e-06, 2.3659e-01, 2.3439e-03, + 2DIAGNOSTIC, 23, -5.824731582753e-01, 5.146819581532e-06, 2.3889e-01, 2.2981e-03, + 2DIAGNOSTIC, 24, -5.824901104450e-01, 5.848297794243e-06, 2.4099e-01, 2.1050e-03, + 2DIAGNOSTIC, 25, -5.825071640831e-01, 6.420733629782e-06, 2.4314e-01, 2.1451e-03, + 2DIAGNOSTIC, 26, -5.825268779410e-01, 6.866164736240e-06, 2.4519e-01, 2.0480e-03, + 2DIAGNOSTIC, 27, -5.825912059085e-01, 7.961045598283e-06, 2.4753e-01, 2.3429e-03, + 2DIAGNOSTIC, 28, -5.827721268683e-01, 1.155462141260e-05, 2.4990e-01, 2.3680e-03, + 2DIAGNOSTIC, 29, -5.827962255314e-01, 1.437996672132e-05, 2.5386e-01, 3.9680e-03, + 2DIAGNOSTIC, 30, -5.827965211969e-01, 1.598803536402e-05, 2.5667e-01, 2.8062e-03, + 2DIAGNOSTIC, 31, -5.827965678762e-01, 1.635870183692e-05, 2.5912e-01, 2.4450e-03, + 2DIAGNOSTIC, 32, -5.827965819096e-01, 1.549886519454e-05, 2.6154e-01, 2.4230e-03, + 2DIAGNOSTIC, 33, -5.827965925735e-01, 1.352663512601e-05, 2.6401e-01, 2.4688e-03, + 2DIAGNOSTIC, 34, -5.827966041836e-01, 1.071773341546e-05, 2.6658e-01, 2.5759e-03, + 2DIAGNOSTIC, 35, -5.827966216963e-01, 7.421340232898e-06, 2.6882e-01, 2.2368e-03, + 2DIAGNOSTIC, 36, -5.827967381388e-01, 3.968158812848e-06, 2.7104e-01, 2.2180e-03, + 2DIAGNOSTIC, 37, -5.827970982432e-01, 1.197819520318e-06, 2.7313e-01, 2.0959e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.922730520994e-01, 1.797693134862e+308, 4.7780e-01, 2.0467e-01, + 2DIAGNOSTIC, 2, -4.931619050559e-01, 1.797693134862e+308, 4.9211e-01, 1.4303e-02, + 2DIAGNOSTIC, 3, -4.941494539763e-01, 1.797693134862e+308, 5.0564e-01, 1.3530e-02, + 2DIAGNOSTIC, 4, -4.946777224619e-01, 1.797693134862e+308, 5.2004e-01, 1.4407e-02, + 2DIAGNOSTIC, 5, -4.948882267839e-01, 1.797693134862e+308, 5.3255e-01, 1.2508e-02, + 2DIAGNOSTIC, 6, -4.951109336668e-01, 1.797693134862e+308, 5.4589e-01, 1.3338e-02, + 2DIAGNOSTIC, 7, -4.954732795990e-01, 1.797693134862e+308, 5.6375e-01, 1.7855e-02, + 2DIAGNOSTIC, 8, -4.954960736469e-01, 1.797693134862e+308, 5.7711e-01, 1.3369e-02, + 2DIAGNOSTIC, 9, -4.954923867155e-01, 1.797693134862e+308, 5.8908e-01, 1.1969e-02, + 2DIAGNOSTIC, 10, -4.954935614000e-01, 3.829979635718e-04, 6.0429e-01, 1.5205e-02, + 2DIAGNOSTIC, 11, -4.954871158670e-01, 2.334836952760e-04, 6.1778e-01, 1.3496e-02, + 2DIAGNOSTIC, 12, -4.954790263901e-01, 1.291974651037e-04, 6.2960e-01, 1.1817e-02, + 2DIAGNOSTIC, 13, -4.954734956859e-01, 7.247453376143e-05, 6.4151e-01, 1.1906e-02, + 2DIAGNOSTIC, 14, -4.954845604425e-01, 3.973201763437e-05, 6.5627e-01, 1.4762e-02, + 2DIAGNOSTIC, 15, -4.954976212788e-01, 1.641793943329e-05, 6.7173e-01, 1.5459e-02, + 2DIAGNOSTIC, 16, -4.954960580765e-01, 2.274970333546e-06, 6.8532e-01, 1.3588e-02, + 2DIAGNOSTIC, 17, -4.955126506886e-01, 2.566432728335e-06, 6.9912e-01, 1.3807e-02, + 2DIAGNOSTIC, 18, -4.955375399394e-01, 4.276500987034e-06, 7.1289e-01, 1.3766e-02, + 2DIAGNOSTIC, 19, -4.955465662945e-01, 5.705267644984e-06, 7.3146e-01, 1.8570e-02, + 2DIAGNOSTIC, 20, -4.955610287061e-01, 7.066960903399e-06, 7.4534e-01, 1.3878e-02, + 2DIAGNOSTIC, 21, -4.955696770905e-01, 7.858918275219e-06, 7.6064e-01, 1.5299e-02, + 2DIAGNOSTIC, 22, -4.955900590099e-01, 8.312840609356e-06, 7.7649e-01, 1.5856e-02, + 2DIAGNOSTIC, 23, -4.955965384540e-01, 8.085016317265e-06, 7.9116e-01, 1.4669e-02, + 2DIAGNOSTIC, 24, -4.955917292538e-01, 7.392404287654e-06, 8.1270e-01, 2.1539e-02, + 2DIAGNOSTIC, 25, -4.956046087935e-01, 6.801600883746e-06, 8.2860e-01, 1.5899e-02, + 2DIAGNOSTIC, 26, -4.956057740193e-01, 5.713754135321e-06, 8.4268e-01, 1.4081e-02, + 2DIAGNOSTIC, 27, -4.956112019125e-01, 4.736346835781e-06, 8.5867e-01, 1.5990e-02, + 2DIAGNOSTIC, 28, -4.956122571287e-01, 4.024201567587e-06, 8.7257e-01, 1.3902e-02, + 2DIAGNOSTIC, 29, -4.956047086358e-01, 3.119461271114e-06, 8.8672e-01, 1.4145e-02, + 2DIAGNOSTIC, 30, -4.956099747642e-01, 2.465461200384e-06, 9.0854e-01, 2.1820e-02, + 2DIAGNOSTIC, 31, -4.956109401516e-01, 1.882102094397e-06, 9.2247e-01, 1.3930e-02, + 2DIAGNOSTIC, 32, -4.956112945020e-01, 1.622090430753e-06, 9.3829e-01, 1.5827e-02, + 2DIAGNOSTIC, 33, -4.956113274455e-01, 1.438368401878e-06, 9.8522e-01, 4.6925e-02, + 2DIAGNOSTIC, 34, -4.956113274398e-01, 1.136880012419e-06, 1.0311e+00, 4.5832e-02, + 2DIAGNOSTIC, 35, -4.956113274398e-01, 1.044578707872e-06, 1.0499e+00, 1.8865e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.185823991340e-01, 1.797693134862e+308, 1.4221e+00, 3.7223e-01, + 2DIAGNOSTIC, 2, -4.189765771652e-01, 1.797693134862e+308, 1.5068e+00, 8.4671e-02, + 2DIAGNOSTIC, 3, -4.191532364347e-01, 1.797693134862e+308, 1.5906e+00, 8.3759e-02, + 2DIAGNOSTIC, 4, -4.192691043356e-01, 1.797693134862e+308, 1.6730e+00, 8.2447e-02, + 2DIAGNOSTIC, 5, -4.194293578327e-01, 1.797693134862e+308, 1.7795e+00, 1.0645e-01, + 2DIAGNOSTIC, 6, -4.195812903189e-01, 1.797693134862e+308, 1.8931e+00, 1.1361e-01, + 2DIAGNOSTIC, 7, -4.196159052513e-01, 1.797693134862e+308, 1.9945e+00, 1.0138e-01, + 2DIAGNOSTIC, 8, -4.196372492602e-01, 1.797693134862e+308, 2.1094e+00, 1.1492e-01, + 2DIAGNOSTIC, 9, -4.196416797871e-01, 1.797693134862e+308, 2.2786e+00, 1.6926e-01, + 2DIAGNOSTIC, 10, -4.196408557019e-01, 1.500013182794e-04, 2.3776e+00, 9.8938e-02, + 2DIAGNOSTIC, 11, -4.196460999621e-01, 9.283321768833e-05, 2.4766e+00, 9.8977e-02, + 2DIAGNOSTIC, 12, -4.196520891727e-01, 5.959836634283e-05, 2.5687e+00, 9.2098e-02, + 2DIAGNOSTIC, 13, -4.196570737050e-01, 3.582997759437e-05, 2.6627e+00, 9.4021e-02, + 2DIAGNOSTIC, 14, -4.196610896900e-01, 1.811621402624e-05, 2.7458e+00, 8.3135e-02, + 2DIAGNOSTIC, 15, -4.196643815651e-01, 8.545385984063e-06, 2.8542e+00, 1.0840e-01, + 2DIAGNOSTIC, 16, -4.196661911504e-01, 6.061786248762e-06, 2.9376e+00, 8.3428e-02, + 2DIAGNOSTIC, 17, -4.196666458661e-01, 4.867030699005e-06, 3.0374e+00, 9.9725e-02, + 2DIAGNOSTIC, 18, -4.196702789331e-01, 4.464359599311e-06, 3.1234e+00, 8.6038e-02, + 2DIAGNOSTIC, 19, -4.196761296431e-01, 4.221424095369e-06, 3.2087e+00, 8.5298e-02, + 2DIAGNOSTIC, 20, -4.196964826698e-01, 4.421197781518e-06, 3.3034e+00, 9.4656e-02, + 2DIAGNOSTIC, 21, -4.197202032795e-01, 5.255154010390e-06, 3.6401e+00, 3.3675e-01, + 2DIAGNOSTIC, 22, -4.197202032606e-01, 5.835990979301e-06, 3.9870e+00, 3.4692e-01, + 2DIAGNOSTIC, 23, -4.197202032606e-01, 6.116758441838e-06, 4.1026e+00, 1.1561e-01, + 2DIAGNOSTIC, 24, -4.197202032606e-01, 6.047538654401e-06, 4.2164e+00, 1.1377e-01, + 2DIAGNOSTIC, 25, -4.197202032606e-01, 5.617726072722e-06, 4.3299e+00, 1.1346e-01, + 2DIAGNOSTIC, 26, -4.197202032606e-01, 4.850370183752e-06, 4.4575e+00, 1.2768e-01, + 2DIAGNOSTIC, 27, -4.197202032606e-01, 3.814953235953e-06, 4.5729e+00, 1.1535e-01, + 2DIAGNOSTIC, 28, -4.197202032606e-01, 2.703987807433e-06, 4.6957e+00, 1.2284e-01, + 2DIAGNOSTIC, 29, -4.197202032606e-01, 1.651335959918e-06, 4.8032e+00, 1.0748e-01, + 2DIAGNOSTIC, 30, -4.197202032606e-01, 1.060685814860e-06, 4.9060e+00, 1.0277e-01, + 2DIAGNOSTIC, 31, -4.197202032606e-01, 1.026459456120e-06, 5.0187e+00, 1.1270e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.639445704248e-01, 1.797693134862e+308, 6.2889e+00, 1.2702e+00, + 2DIAGNOSTIC, 2, -3.640927352682e-01, 1.797693134862e+308, 6.9045e+00, 6.1561e-01, + 2DIAGNOSTIC, 3, -3.641888106725e-01, 1.797693134862e+308, 7.4975e+00, 5.9297e-01, + 2DIAGNOSTIC, 4, -3.642606467673e-01, 1.797693134862e+308, 8.1035e+00, 6.0605e-01, + 2DIAGNOSTIC, 5, -3.642993177231e-01, 1.797693134862e+308, 8.6629e+00, 5.5941e-01, + 2DIAGNOSTIC, 6, -3.643454618750e-01, 1.797693134862e+308, 9.4222e+00, 7.5927e-01, + 2DIAGNOSTIC, 7, -3.643741023931e-01, 1.797693134862e+308, 1.0098e+01, 6.7618e-01, + 2DIAGNOSTIC, 8, -3.643789971551e-01, 1.797693134862e+308, 1.0919e+01, 8.2060e-01, + 2DIAGNOSTIC, 9, -3.643791846678e-01, 1.797693134862e+308, 1.2865e+01, 1.9455e+00, + 2DIAGNOSTIC, 10, -3.643791846513e-01, 7.176201558931e-05, 1.4854e+01, 1.9899e+00, + 2DIAGNOSTIC, 11, -3.643791846513e-01, 4.388265307834e-05, 1.5610e+01, 7.5577e-01, + 2DIAGNOSTIC, 12, -3.643791846513e-01, 2.648339259356e-05, 1.6291e+01, 6.8121e-01, + 2DIAGNOSTIC, 13, -3.643791846513e-01, 1.531369582865e-05, 1.6915e+01, 6.2327e-01, + 2DIAGNOSTIC, 14, -3.643791846513e-01, 8.568590464483e-06, 1.7802e+01, 8.8698e-01, + 2DIAGNOSTIC, 15, -3.643791846513e-01, 4.112768074951e-06, 1.8424e+01, 6.2278e-01, + 2DIAGNOSTIC, 16, -3.643791846513e-01, 2.244301452875e-06, 1.9107e+01, 6.8286e-01, + 2DIAGNOSTIC, 17, -3.643791846513e-01, 1.880122574432e-06, 1.9781e+01, 6.7398e-01, + 2DIAGNOSTIC, 18, -3.643791846513e-01, 1.767526820934e-06, 2.0443e+01, 6.6159e-01, + 2DIAGNOSTIC, 19, -3.643791846513e-01, 1.674484332956e-06, 2.1088e+01, 6.4529e-01, + 2DIAGNOSTIC, 20, -3.643791846513e-01, 1.590746915775e-06, 2.1691e+01, 6.0298e-01, + 2DIAGNOSTIC, 21, -3.643791846513e-01, 1.514985688171e-06, 2.2348e+01, 6.5706e-01, + 2DIAGNOSTIC, 22, -3.643791846513e-01, 1.446112832072e-06, 2.3020e+01, 6.7211e-01, + 2DIAGNOSTIC, 23, -3.643791846513e-01, 1.383229741053e-06, 2.3776e+01, 7.5525e-01, + 2DIAGNOSTIC, 24, -3.643791846513e-01, 1.325587596170e-06, 2.4390e+01, 6.1436e-01, + 2DIAGNOSTIC, 25, -3.643791846513e-01, 1.272557404466e-06, 2.5067e+01, 6.7746e-01, + 2DIAGNOSTIC, 26, -3.643791846513e-01, 1.223606952976e-06, 2.5728e+01, 6.6067e-01, + 2DIAGNOSTIC, 27, -3.643791846513e-01, 1.178282884338e-06, 2.6391e+01, 6.6241e-01, + 2DIAGNOSTIC, 28, -3.643791846513e-01, 1.136196613766e-06, 2.7071e+01, 6.8084e-01, + 2DIAGNOSTIC, 29, -3.643791846513e-01, 1.097013160201e-06, 2.7745e+01, 6.7397e-01, + 2DIAGNOSTIC, 30, -3.643791846513e-01, 1.060442211445e-06, 2.8424e+01, 6.7866e-01, + 2DIAGNOSTIC, 31, -3.643791846513e-01, 1.026230918709e-06, 2.9198e+01, 7.7387e-01, + Elapsed time (stage 1): 2.9595e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.978664964672e-01, 1.797693134862e+308, 2.5790e-01, 2.5790e-01, + 1DIAGNOSTIC, 2, -9.078866135940e-01, 1.797693134862e+308, 3.5458e-01, 9.6675e-02, + 1DIAGNOSTIC, 3, -9.165310793355e-01, 1.797693134862e+308, 4.5014e-01, 9.5562e-02, + 1DIAGNOSTIC, 4, -9.240121375679e-01, 1.797693134862e+308, 5.4368e-01, 9.3536e-02, + 1DIAGNOSTIC, 5, -9.306743117923e-01, 1.797693134862e+308, 6.3552e-01, 9.1844e-02, + 1DIAGNOSTIC, 6, -9.357448460866e-01, 1.797693134862e+308, 7.3330e-01, 9.7778e-02, + 1DIAGNOSTIC, 7, -9.400308485245e-01, 1.797693134862e+308, 8.3690e-01, 1.0360e-01, + 1DIAGNOSTIC, 8, -9.434294624932e-01, 1.797693134862e+308, 9.3543e-01, 9.8524e-02, + 1DIAGNOSTIC, 9, -9.463083554571e-01, 1.797693134862e+308, 1.0365e+00, 1.0106e-01, + 1DIAGNOSTIC, 10, -9.488228170568e-01, 3.420673661151e-03, 1.1350e+00, 9.8494e-02, + 1DIAGNOSTIC, 11, -9.510506524866e-01, 2.602706743224e-03, 1.2329e+00, 9.7893e-02, + 1DIAGNOSTIC, 12, -9.530852616945e-01, 1.993215690192e-03, 1.3351e+00, 1.0221e-01, + 1DIAGNOSTIC, 13, -9.549102694651e-01, 1.541673914816e-03, 1.4386e+00, 1.0347e-01, + 1DIAGNOSTIC, 14, -9.564137072267e-01, 1.208404194710e-03, 1.5317e+00, 9.3106e-02, + 1DIAGNOSTIC, 15, -9.577193306609e-01, 9.696745001605e-04, 1.6313e+00, 9.9619e-02, + 1DIAGNOSTIC, 16, -9.588955808567e-01, 7.894052947091e-04, 1.7269e+00, 9.5642e-02, + 1DIAGNOSTIC, 17, -9.593676850759e-01, 6.418132439036e-04, 1.8200e+00, 9.3096e-02, + 1DIAGNOSTIC, 18, -9.596958507384e-01, 5.137577396284e-04, 1.9184e+00, 9.8419e-02, + 1DIAGNOSTIC, 19, -9.594481434871e-01, 3.932814047443e-04, 2.0079e+00, 8.9427e-02, + 1DIAGNOSTIC, 20, -9.597845794512e-01, 2.913151832041e-04, 2.1010e+00, 9.3170e-02, + 1DIAGNOSTIC, 21, -9.593637984095e-01, 1.975200517261e-04, 2.1959e+00, 9.4858e-02, + 1DIAGNOSTIC, 22, -9.596117942238e-01, 1.251195272525e-04, 2.2916e+00, 9.5666e-02, + 1DIAGNOSTIC, 23, -9.592091343569e-01, 6.586755011677e-05, 2.3910e+00, 9.9476e-02, + 1DIAGNOSTIC, 24, -9.594375135310e-01, 2.718935292183e-05, 2.4939e+00, 1.0290e-01, + 1DIAGNOSTIC, 25, -9.590201138517e-01, -5.055727746381e-07, 2.5947e+00, 1.0073e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.298925236486e-01, 1.797693134862e+308, 3.4313e+00, 8.3663e-01, + 1DIAGNOSTIC, 2, -9.327425524128e-01, 1.797693134862e+308, 4.0909e+00, 6.5966e-01, + 1DIAGNOSTIC, 3, -9.355284712112e-01, 1.797693134862e+308, 4.7449e+00, 6.5393e-01, + 1DIAGNOSTIC, 4, -9.379958134164e-01, 1.797693134862e+308, 5.3858e+00, 6.4097e-01, + 1DIAGNOSTIC, 5, -9.403917363555e-01, 1.797693134862e+308, 6.0447e+00, 6.5882e-01, + 1DIAGNOSTIC, 6, -9.425062210042e-01, 1.797693134862e+308, 6.7075e+00, 6.6282e-01, + 1DIAGNOSTIC, 7, -9.442652683271e-01, 1.797693134862e+308, 7.3722e+00, 6.6476e-01, + 1DIAGNOSTIC, 8, -9.457301473495e-01, 1.797693134862e+308, 8.0328e+00, 6.6058e-01, + 1DIAGNOSTIC, 9, -9.468383816901e-01, 1.797693134862e+308, 8.6851e+00, 6.5224e-01, + 1DIAGNOSTIC, 10, -9.477805817977e-01, 1.231494104647e-03, 9.3225e+00, 6.3740e-01, + 1DIAGNOSTIC, 11, -9.485822645119e-01, 9.784599150042e-04, 9.9669e+00, 6.4447e-01, + 1DIAGNOSTIC, 12, -9.492643347872e-01, 7.680742536804e-04, 1.0637e+01, 6.7048e-01, + 1DIAGNOSTIC, 13, -9.498533397491e-01, 5.986252200372e-04, 1.1286e+01, 6.4874e-01, + 1DIAGNOSTIC, 14, -9.503553330634e-01, 4.625371553294e-04, 1.1954e+01, 6.6772e-01, + 1DIAGNOSTIC, 15, -9.507855125475e-01, 3.587764650723e-04, 1.2610e+01, 6.5646e-01, + 1DIAGNOSTIC, 16, -9.511449718708e-01, 2.813547046500e-04, 1.3278e+01, 6.6774e-01, + 1DIAGNOSTIC, 17, -9.514592905591e-01, 2.236227159930e-04, 1.3936e+01, 6.5825e-01, + 1DIAGNOSTIC, 18, -9.517341828546e-01, 1.806222393956e-04, 1.4601e+01, 6.6419e-01, + 1DIAGNOSTIC, 19, -9.519781233651e-01, 1.467451583536e-04, 1.5268e+01, 6.6712e-01, + 1DIAGNOSTIC, 20, -9.521852908807e-01, 1.198630959571e-04, 1.5910e+01, 6.4196e-01, + 1DIAGNOSTIC, 21, -9.523677727688e-01, 9.845927325389e-05, 1.6571e+01, 6.6160e-01, + 1DIAGNOSTIC, 22, -9.525253128588e-01, 8.128908733496e-05, 1.7234e+01, 6.6324e-01, + 1DIAGNOSTIC, 23, -9.526635755483e-01, 6.753134098109e-05, 1.7901e+01, 6.6624e-01, + 1DIAGNOSTIC, 24, -9.527916306385e-01, 5.651105082681e-05, 1.8556e+01, 6.5577e-01, + 1DIAGNOSTIC, 25, -9.528959712997e-01, 4.753574718994e-05, 1.9190e+01, 6.3367e-01, + 1DIAGNOSTIC, 26, -9.529867907474e-01, 4.003998742342e-05, 1.9857e+01, 6.6709e-01, + 1DIAGNOSTIC, 27, -9.530598906226e-01, 3.370032401170e-05, 2.0493e+01, 6.3570e-01, + 1DIAGNOSTIC, 28, -9.531282208647e-01, 2.838089735075e-05, 2.1133e+01, 6.4001e-01, + 1DIAGNOSTIC, 29, -9.531868292584e-01, 2.394704200147e-05, 2.1790e+01, 6.5710e-01, + 1DIAGNOSTIC, 30, -9.532357739899e-01, 2.017695634102e-05, 2.2440e+01, 6.4965e-01, + 1DIAGNOSTIC, 31, -9.532776045456e-01, 1.698701928490e-05, 2.3099e+01, 6.5905e-01, + 1DIAGNOSTIC, 32, -9.533112268853e-01, 1.425551822284e-05, 2.3764e+01, 6.6494e-01, + 1DIAGNOSTIC, 33, -9.533442929294e-01, 1.196857013630e-05, 2.4435e+01, 6.7145e-01, + 1DIAGNOSTIC, 34, -9.533730154383e-01, 1.013659621840e-05, 2.5076e+01, 6.4105e-01, + 1DIAGNOSTIC, 35, -9.533984492177e-01, 8.632363454556e-06, 2.5710e+01, 6.3427e-01, + 1DIAGNOSTIC, 36, -9.534200090886e-01, 7.403328756858e-06, 2.6357e+01, 6.4666e-01, + 1DIAGNOSTIC, 37, -9.534378064656e-01, 6.347470791413e-06, 2.7023e+01, 6.6582e-01, + 1DIAGNOSTIC, 38, -9.534528326815e-01, 5.473912170064e-06, 2.7686e+01, 6.6318e-01, + 1DIAGNOSTIC, 39, -9.534665884766e-01, 4.752328224510e-06, 2.8353e+01, 6.6690e-01, + 1DIAGNOSTIC, 40, -9.534828919859e-01, 4.174307824314e-06, 2.8994e+01, 6.4115e-01, + 1DIAGNOSTIC, 41, -9.534830883749e-01, 3.604388494841e-06, 2.9659e+01, 6.6501e-01, + 1DIAGNOSTIC, 42, -9.534913007341e-01, 3.088610908943e-06, 3.0316e+01, 6.5734e-01, + 1DIAGNOSTIC, 43, -9.534898323754e-01, 2.590928412430e-06, 3.0958e+01, 6.4153e-01, + 1DIAGNOSTIC, 44, -9.534975519213e-01, 2.184535665094e-06, 3.1621e+01, 6.6296e-01, + 1DIAGNOSTIC, 45, -9.534991913809e-01, 1.832870687283e-06, 3.2262e+01, 6.4143e-01, + 1DIAGNOSTIC, 46, -9.535023177999e-01, 1.548491478178e-06, 3.2913e+01, 6.5057e-01, + 1DIAGNOSTIC, 47, -9.535067916324e-01, 1.335754335193e-06, 3.3548e+01, 6.3494e-01, + 1DIAGNOSTIC, 48, -9.535087353238e-01, 1.172981841786e-06, 3.4213e+01, 6.6466e-01, + 1DIAGNOSTIC, 49, -9.535096327420e-01, 1.055152467445e-06, 3.4873e+01, 6.6064e-01, + 1DIAGNOSTIC, 50, -9.535047241275e-01, 9.719596472668e-07, 3.5531e+01, 6.5751e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.099217893291e-01, 1.797693134862e+308, 4.1115e+01, 5.5838e+00, + 1DIAGNOSTIC, 2, -9.127000556499e-01, 1.797693134862e+308, 4.6445e+01, 5.3307e+00, + 1DIAGNOSTIC, 3, -9.155704394463e-01, 1.797693134862e+308, 5.1798e+01, 5.3527e+00, + 1DIAGNOSTIC, 4, -9.180077232727e-01, 1.797693134862e+308, 5.7132e+01, 5.3339e+00, + 1DIAGNOSTIC, 5, -9.201222908435e-01, 1.797693134862e+308, 6.2484e+01, 5.3525e+00, + 1DIAGNOSTIC, 6, -9.220099384020e-01, 1.797693134862e+308, 6.7844e+01, 5.3592e+00, + 1DIAGNOSTIC, 7, -9.237060669213e-01, 1.797693134862e+308, 7.3191e+01, 5.3475e+00, + 1DIAGNOSTIC, 8, -9.252573301675e-01, 1.797693134862e+308, 7.8502e+01, 5.3106e+00, + 1DIAGNOSTIC, 9, -9.266475418784e-01, 1.797693134862e+308, 8.3847e+01, 5.3457e+00, + 1DIAGNOSTIC, 10, -9.279223050778e-01, 1.237345669605e-03, 8.9160e+01, 5.3126e+00, + 1DIAGNOSTIC, 11, -9.291192453450e-01, 1.011517998680e-03, 9.4511e+01, 5.3515e+00, + 1DIAGNOSTIC, 12, -9.301606159921e-01, 8.298923295716e-04, 9.9853e+01, 5.3418e+00, + 1DIAGNOSTIC, 13, -9.312434204622e-01, 6.943480723514e-04, 1.0518e+02, 5.3293e+00, + 1DIAGNOSTIC, 14, -9.321447168299e-01, 5.879661077965e-04, 1.1051e+02, 5.3289e+00, + 1DIAGNOSTIC, 15, -9.331084256858e-01, 5.048388083463e-04, 1.1588e+02, 5.3686e+00, + 1DIAGNOSTIC, 16, -9.337992195363e-01, 4.349786444084e-04, 1.2122e+02, 5.3414e+00, + 1DIAGNOSTIC, 17, -9.344499333787e-01, 3.754990725117e-04, 1.2660e+02, 5.3789e+00, + 1DIAGNOSTIC, 18, -9.350779913743e-01, 3.249324966756e-04, 1.3195e+02, 5.3471e+00, + 1DIAGNOSTIC, 19, -9.356919788608e-01, 2.817379950729e-04, 1.3730e+02, 5.3561e+00, + 1DIAGNOSTIC, 20, -9.363017458275e-01, 2.453930915902e-04, 1.4267e+02, 5.3640e+00, + 1DIAGNOSTIC, 21, -9.369066759938e-01, 2.158543554404e-04, 1.4808e+02, 5.4166e+00, + 1DIAGNOSTIC, 22, -9.374902196976e-01, 1.913675413288e-04, 1.5343e+02, 5.3504e+00, + 1DIAGNOSTIC, 23, -9.379849728199e-01, 1.720362421472e-04, 1.5880e+02, 5.3632e+00, + 1DIAGNOSTIC, 24, -9.384026817539e-01, 1.548963783164e-04, 1.6417e+02, 5.3722e+00, + 1DIAGNOSTIC, 25, -9.387664522228e-01, 1.408128225235e-04, 1.6953e+02, 5.3586e+00, + 1DIAGNOSTIC, 26, -9.390945729276e-01, 1.265358861638e-04, 1.7487e+02, 5.3370e+00, + 1DIAGNOSTIC, 27, -9.394090084790e-01, 1.123108176176e-04, 1.8024e+02, 5.3724e+00, + 1DIAGNOSTIC, 28, -9.397066194694e-01, 9.860982267136e-05, 1.8558e+02, 5.3381e+00, + 1DIAGNOSTIC, 29, -9.399983379083e-01, 8.609276457270e-05, 1.9092e+02, 5.3479e+00, + 1DIAGNOSTIC, 30, -9.402966402558e-01, 7.551792889008e-05, 1.9624e+02, 5.3190e+00, + 1DIAGNOSTIC, 31, -9.406055313543e-01, 6.746506448643e-05, 2.0159e+02, 5.3451e+00, + 1DIAGNOSTIC, 32, -9.409193100418e-01, 6.207607016496e-05, 2.0693e+02, 5.3380e+00, + 1DIAGNOSTIC, 33, -9.412257040971e-01, 5.853972582554e-05, 2.1230e+02, 5.3735e+00, + 1DIAGNOSTIC, 34, -9.415196761108e-01, 5.605707958049e-05, 2.1765e+02, 5.3479e+00, + 1DIAGNOSTIC, 35, -9.417995818099e-01, 5.402221922384e-05, 2.2300e+02, 5.3557e+00, + 1DIAGNOSTIC, 36, -9.420534025470e-01, 5.191456613104e-05, 2.2834e+02, 5.3369e+00, + 1DIAGNOSTIC, 37, -9.422814480828e-01, 4.947809849969e-05, 2.3371e+02, 5.3738e+00, + 1DIAGNOSTIC, 38, -9.424880203199e-01, 4.653531043636e-05, 2.3904e+02, 5.3282e+00, + 1DIAGNOSTIC, 39, -9.426768409727e-01, 4.309753473470e-05, 2.4442e+02, 5.3826e+00, + 1DIAGNOSTIC, 40, -9.428485774262e-01, 3.933411704444e-05, 2.4978e+02, 5.3570e+00, + 1DIAGNOSTIC, 41, -9.430074438186e-01, 3.550810541726e-05, 2.5515e+02, 5.3700e+00, + 1DIAGNOSTIC, 42, -9.431565758216e-01, 3.186402881574e-05, 2.6049e+02, 5.3362e+00, + 1DIAGNOSTIC, 43, -9.432922000937e-01, 2.850877637024e-05, 2.6591e+02, 5.4183e+00, + 1DIAGNOSTIC, 44, -9.434161735131e-01, 2.550644794489e-05, 2.7129e+02, 5.3794e+00, + 1DIAGNOSTIC, 45, -9.435312863294e-01, 2.290632234538e-05, 2.7663e+02, 5.3429e+00, + 1DIAGNOSTIC, 46, -9.436360529274e-01, 2.063782414104e-05, 2.8199e+02, 5.3609e+00, + 1DIAGNOSTIC, 47, -9.437359542613e-01, 1.865295403171e-05, 2.8737e+02, 5.3848e+00, + 1DIAGNOSTIC, 48, -9.438276533196e-01, 1.689529767956e-05, 2.9271e+02, 5.3358e+00, + 1DIAGNOSTIC, 49, -9.439145850374e-01, 1.534487975297e-05, 2.9807e+02, 5.3644e+00, + 1DIAGNOSTIC, 50, -9.439978760207e-01, 1.397983607628e-05, 3.0343e+02, 5.3590e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.132306797253e-01, 1.797693134862e+308, 3.4728e+02, 4.3844e+01, + 1DIAGNOSTIC, 2, -9.145816033665e-01, 1.797693134862e+308, 3.9067e+02, 4.3387e+01, + 1DIAGNOSTIC, 3, -9.161816222889e-01, 1.797693134862e+308, 4.3403e+02, 4.3363e+01, + 1DIAGNOSTIC, 4, -9.177514478801e-01, 1.797693134862e+308, 4.7738e+02, 4.3353e+01, + 1DIAGNOSTIC, 5, -9.192231661033e-01, 1.797693134862e+308, 5.2082e+02, 4.3437e+01, + 1DIAGNOSTIC, 6, -9.205711922146e-01, 1.797693134862e+308, 5.6423e+02, 4.3408e+01, + 1DIAGNOSTIC, 7, -9.218503412116e-01, 1.797693134862e+308, 6.0761e+02, 4.3380e+01, + 1DIAGNOSTIC, 8, -9.229513768156e-01, 1.797693134862e+308, 6.5094e+02, 4.3332e+01, + 1DIAGNOSTIC, 9, -9.239299607681e-01, 1.797693134862e+308, 6.9463e+02, 4.3691e+01, + 1DIAGNOSTIC, 10, -9.247951206383e-01, 8.259972594918e-04, 7.3804e+02, 4.3417e+01, + 1DIAGNOSTIC, 11, -9.254150118596e-01, 6.950777736593e-04, 7.8144e+02, 4.3395e+01, + 1DIAGNOSTIC, 12, -9.260285301100e-01, 5.739288216352e-04, 8.2477e+02, 4.3326e+01, + 1DIAGNOSTIC, 13, -9.265702514298e-01, 4.701116427464e-04, 8.6809e+02, 4.3328e+01, + 1DIAGNOSTIC, 14, -9.270709196646e-01, 3.837588064450e-04, 9.1150e+02, 4.3401e+01, + 1DIAGNOSTIC, 15, -9.275308468272e-01, 3.133794498769e-04, 9.5496e+02, 4.3466e+01, + 1DIAGNOSTIC, 16, -9.278707839362e-01, 2.554051875964e-04, 9.9841e+02, 4.3453e+01, + 1DIAGNOSTIC, 17, -9.282157111659e-01, 2.100990692352e-04, 1.0419e+03, 4.3522e+01, + 1DIAGNOSTIC, 18, -9.285548911354e-01, 1.749364949109e-04, 1.0854e+03, 4.3419e+01, + 1DIAGNOSTIC, 19, -9.288979939051e-01, 1.485507719290e-04, 1.1288e+03, 4.3398e+01, + 1DIAGNOSTIC, 20, -9.292228232570e-01, 1.292908430686e-04, 1.1724e+03, 4.3616e+01, + Elapsed time (stage 2): 1173 + + +Total elapsed time: 1224 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:58:55 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:58:55 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:58:58 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:03 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:06 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:06 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15504 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:07 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:10 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:10 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15555 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:10 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:13 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:13 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15602 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:13 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15611 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:14 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:18 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:20 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:21 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:22 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:24 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:24 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:25 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:26 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:37 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:48 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC008 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:48 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC008 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:48 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC008 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:48 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 16197 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:50 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 16234 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:52 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:52 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC008_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 67.917 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/logs/proc_func_19-03-2024-26030.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:58 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC008 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/QC/sub-PNC008_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC008* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 67.950 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC008_ses-01 +========================reprocessing without filter=================== +sub-PNC008_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC008 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC008 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC008 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC008 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:00:03 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:00:03 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz is 40.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:02:05 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:04:10 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:04:24 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.00 (mm) at sub-brick 138 +++ Max delta displ in automask = 0.74 (mm) at sub-brick 95 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:17:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:17:26 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz is 40.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:19:33 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:21:40 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz is 40.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:23:52 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.135 -3.411 3.167 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 68.8 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.120 -4.691 4.694 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.0 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:28:32 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:28:59 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55fc559a76f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [108.102, 62.9567, -114.401] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fc5581e730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55fc559be320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55fc559aafa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.8093, 124.379, -127.966] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fc559b0e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55fc561bb230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55fc561b95c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [108.102, 62.9567, -114.401] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fc559ad3f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55fc56ce5450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55fc561b7da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.8093, 124.379, -127.966] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55fc559b4360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55fc574df780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.030793046007e-01, 1.797693134862e+308, 4.0675e-02, 4.0675e-02, + 2DIAGNOSTIC, 2, -8.044087604646e-01, 1.797693134862e+308, 4.1800e-02, 1.1249e-03, + 2DIAGNOSTIC, 3, -8.049086997220e-01, 1.797693134862e+308, 4.2974e-02, 1.1740e-03, + 2DIAGNOSTIC, 4, -8.063578362269e-01, 1.797693134862e+308, 4.4147e-02, 1.1730e-03, + 2DIAGNOSTIC, 5, -8.117425858701e-01, 1.797693134862e+308, 4.5291e-02, 1.1439e-03, + 2DIAGNOSTIC, 6, -8.175064292180e-01, 1.797693134862e+308, 4.6677e-02, 1.3859e-03, + 2DIAGNOSTIC, 7, -8.207877781595e-01, 1.797693134862e+308, 4.8133e-02, 1.4560e-03, + 2DIAGNOSTIC, 8, -8.201542560574e-01, 1.797693134862e+308, 4.9566e-02, 1.4329e-03, + 2DIAGNOSTIC, 9, -8.211680867014e-01, 1.797693134862e+308, 5.0940e-02, 1.3740e-03, + 2DIAGNOSTIC, 10, -8.217913369012e-01, 1.811699631831e-03, 5.2253e-02, 1.3130e-03, + 2DIAGNOSTIC, 11, -8.224352117025e-01, 1.515091385620e-03, 5.3746e-02, 1.4930e-03, + 2DIAGNOSTIC, 12, -8.227928488042e-01, 1.182552864529e-03, 5.5027e-02, 1.2810e-03, + 2DIAGNOSTIC, 13, -8.225510190543e-01, 8.053334358632e-04, 5.6713e-02, 1.6861e-03, + 2DIAGNOSTIC, 14, -8.228485294728e-01, 4.523489393704e-04, 5.7999e-02, 1.2858e-03, + 2DIAGNOSTIC, 15, -8.231872116524e-01, 2.348938302565e-04, 5.9271e-02, 1.2722e-03, + 2DIAGNOSTIC, 16, -8.228634035677e-01, 1.394205462581e-04, 6.0569e-02, 1.2980e-03, + 2DIAGNOSTIC, 17, -8.241019805995e-01, 1.361220816847e-04, 6.2072e-02, 1.5032e-03, + 2DIAGNOSTIC, 18, -8.246358701288e-01, 1.180339018329e-04, 6.4503e-02, 2.4312e-03, + 2DIAGNOSTIC, 19, -8.249193790464e-01, 1.145393224270e-04, 6.6402e-02, 1.8990e-03, + 2DIAGNOSTIC, 20, -8.250184723519e-01, 1.133669419276e-04, 6.8784e-02, 2.3820e-03, + 2DIAGNOSTIC, 21, -8.250413555571e-01, 1.129296289680e-04, 7.0569e-02, 1.7850e-03, + 2DIAGNOSTIC, 22, -8.251303324779e-01, 1.091713554691e-04, 7.2070e-02, 1.5008e-03, + 2DIAGNOSTIC, 23, -8.252164918663e-01, 9.294015304748e-05, 7.3767e-02, 1.6971e-03, + 2DIAGNOSTIC, 24, -8.252290855419e-01, 7.395002763338e-05, 7.5208e-02, 1.4410e-03, + 2DIAGNOSTIC, 25, -8.252801566487e-01, 5.552465285311e-05, 7.6874e-02, 1.6661e-03, + 2DIAGNOSTIC, 26, -8.253093827635e-01, 2.915864021905e-05, 7.8463e-02, 1.5891e-03, + 2DIAGNOSTIC, 27, -8.254786799847e-01, 2.004095688714e-05, 8.0369e-02, 1.9059e-03, + 2DIAGNOSTIC, 28, -8.256151760094e-01, 1.794619064195e-05, 8.2845e-02, 2.4760e-03, + 2DIAGNOSTIC, 29, -8.256321730909e-01, 1.796085898924e-05, 8.4364e-02, 1.5190e-03, + 2DIAGNOSTIC, 30, -8.256900946932e-01, 1.824786208057e-05, 8.6109e-02, 1.7450e-03, + 2DIAGNOSTIC, 31, -8.257017620585e-01, 1.725532549616e-05, 8.7802e-02, 1.6930e-03, + 2DIAGNOSTIC, 32, -8.257029543390e-01, 1.571683230080e-05, 8.9257e-02, 1.4551e-03, + 2DIAGNOSTIC, 33, -8.257046893220e-01, 1.378545870031e-05, 9.0773e-02, 1.5159e-03, + 2DIAGNOSTIC, 34, -8.257103669320e-01, 1.094571815118e-05, 9.2218e-02, 1.4451e-03, + 2DIAGNOSTIC, 35, -8.257225942461e-01, 7.966275745602e-06, 9.3859e-02, 1.6410e-03, + 2DIAGNOSTIC, 36, -8.257309977772e-01, 4.809574397874e-06, 9.6237e-02, 2.3780e-03, + 2DIAGNOSTIC, 37, -8.257363540487e-01, 3.057470476433e-06, 9.7702e-02, 1.4651e-03, + 2DIAGNOSTIC, 38, -8.257397284363e-01, 2.466674451536e-06, 9.9141e-02, 1.4391e-03, + 2DIAGNOSTIC, 39, -8.257443003703e-01, 1.928971899951e-06, 1.0082e-01, 1.6739e-03, + 2DIAGNOSTIC, 40, -8.257463105810e-01, 1.825763203393e-06, 1.0245e-01, 1.6310e-03, + 2DIAGNOSTIC, 41, -8.257478071227e-01, 1.739995554438e-06, 1.0409e-01, 1.6429e-03, + 2DIAGNOSTIC, 42, -8.267410221867e-01, 9.752012624528e-06, 1.0602e-01, 1.9338e-03, + 2DIAGNOSTIC, 43, -8.267442064787e-01, 1.634232478937e-05, 1.1156e-01, 5.5380e-03, + 2DIAGNOSTIC, 44, -8.267442064704e-01, 2.127653125641e-05, 1.1713e-01, 5.5709e-03, + 2DIAGNOSTIC, 45, -8.267442064704e-01, 2.424224286070e-05, 1.1882e-01, 1.6880e-03, + 2DIAGNOSTIC, 46, -8.267442064704e-01, 2.486175106990e-05, 1.2070e-01, 1.8849e-03, + 2DIAGNOSTIC, 47, -8.267442064704e-01, 2.305749785516e-05, 1.2235e-01, 1.6470e-03, + 2DIAGNOSTIC, 48, -8.267442064704e-01, 1.918219213189e-05, 1.2422e-01, 1.8690e-03, + 2DIAGNOSTIC, 49, -8.267442064704e-01, 1.383785065109e-05, 1.2612e-01, 1.9011e-03, + 2DIAGNOSTIC, 50, -8.267442064704e-01, 7.541126949374e-06, 1.2783e-01, 1.7109e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.402859423864e-01, 1.797693134862e+308, 1.7564e-01, 4.7805e-02, + 2DIAGNOSTIC, 2, -4.406361843670e-01, 1.797693134862e+308, 1.7824e-01, 2.6019e-03, + 2DIAGNOSTIC, 3, -4.416822113705e-01, 1.797693134862e+308, 1.8074e-01, 2.5039e-03, + 2DIAGNOSTIC, 4, -4.422465089487e-01, 1.797693134862e+308, 1.8318e-01, 2.4409e-03, + 2DIAGNOSTIC, 5, -4.426464531516e-01, 1.797693134862e+308, 1.8535e-01, 2.1682e-03, + 2DIAGNOSTIC, 6, -4.432369881618e-01, 1.797693134862e+308, 1.8770e-01, 2.3441e-03, + 2DIAGNOSTIC, 7, -4.437820035236e-01, 1.797693134862e+308, 1.9062e-01, 2.9230e-03, + 2DIAGNOSTIC, 8, -4.439226014675e-01, 1.797693134862e+308, 1.9323e-01, 2.6121e-03, + 2DIAGNOSTIC, 9, -4.439092919657e-01, 1.797693134862e+308, 1.9520e-01, 1.9720e-03, + 2DIAGNOSTIC, 10, -4.439173064014e-01, 5.732482953703e-04, 1.9739e-01, 2.1832e-03, + 2DIAGNOSTIC, 11, -4.439080241457e-01, 4.159299191673e-04, 1.9959e-01, 2.2001e-03, + 2DIAGNOSTIC, 12, -4.439055932090e-01, 2.649479951207e-04, 2.0177e-01, 2.1801e-03, + 2DIAGNOSTIC, 13, -4.439347405336e-01, 1.663398327244e-04, 2.0398e-01, 2.2101e-03, + 2DIAGNOSTIC, 14, -4.441275612506e-01, 1.018035868959e-04, 2.0618e-01, 2.2049e-03, + 2DIAGNOSTIC, 15, -4.451987536445e-01, 9.912940006787e-05, 2.0954e-01, 3.3550e-03, + 2DIAGNOSTIC, 16, -4.457208734592e-01, 1.307966193958e-04, 2.1170e-01, 2.1620e-03, + 2DIAGNOSTIC, 17, -4.466650983421e-01, 2.028701142774e-04, 2.1419e-01, 2.4889e-03, + 2DIAGNOSTIC, 18, -4.479059438464e-01, 2.972873713752e-04, 2.1700e-01, 2.8110e-03, + 2DIAGNOSTIC, 19, -4.492500023013e-01, 3.982900540560e-04, 2.1915e-01, 2.1510e-03, + 2DIAGNOSTIC, 20, -4.494503945540e-01, 4.580024912020e-04, 2.2160e-01, 2.4540e-03, + 2DIAGNOSTIC, 21, -4.497683280472e-01, 4.793953330495e-04, 2.2492e-01, 3.3181e-03, + 2DIAGNOSTIC, 22, -4.498403097101e-01, 4.565817850835e-04, 2.2709e-01, 2.1670e-03, + 2DIAGNOSTIC, 23, -4.501362532300e-01, 4.019879902243e-04, 2.2923e-01, 2.1420e-03, + 2DIAGNOSTIC, 24, -4.503396642682e-01, 3.239407827392e-04, 2.3137e-01, 2.1420e-03, + 2DIAGNOSTIC, 25, -4.503966333571e-01, 2.508672663743e-04, 2.3380e-01, 2.4312e-03, + 2DIAGNOSTIC, 26, -4.504081214160e-01, 1.733209941312e-04, 2.3597e-01, 2.1629e-03, + 2DIAGNOSTIC, 27, -4.504202712117e-01, 1.075782112564e-04, 2.3901e-01, 3.0401e-03, + 2DIAGNOSTIC, 28, -4.504444611492e-01, 6.451197942577e-05, 2.4147e-01, 2.4631e-03, + 2DIAGNOSTIC, 29, -4.504493756101e-01, 4.796530817591e-05, 2.4364e-01, 2.1660e-03, + 2DIAGNOSTIC, 30, -4.504416394357e-01, 3.208954814889e-05, 2.4583e-01, 2.1951e-03, + 2DIAGNOSTIC, 31, -4.504688072375e-01, 2.150241579060e-05, 2.4853e-01, 2.7030e-03, + 2DIAGNOSTIC, 32, -4.504711849688e-01, 1.099880562862e-05, 2.5096e-01, 2.4211e-03, + 2DIAGNOSTIC, 33, -4.504910048565e-01, 6.175366409608e-06, 2.5339e-01, 2.4321e-03, + 2DIAGNOSTIC, 34, -4.504976878032e-01, 5.046081154793e-06, 2.5582e-01, 2.4281e-03, + 2DIAGNOSTIC, 35, -4.505110891209e-01, 4.876324059794e-06, 2.5795e-01, 2.1310e-03, + 2DIAGNOSTIC, 36, -4.505207599455e-01, 4.706280697053e-06, 2.6040e-01, 2.4500e-03, + 2DIAGNOSTIC, 37, -4.505229959690e-01, 4.412679292090e-06, 2.6283e-01, 2.4309e-03, + 2DIAGNOSTIC, 38, -4.505239451262e-01, 4.219273182383e-06, 2.6527e-01, 2.4381e-03, + 2DIAGNOSTIC, 39, -4.505252410108e-01, 3.823630454990e-06, 2.6771e-01, 2.4400e-03, + 2DIAGNOSTIC, 40, -4.505253425106e-01, 3.029213666076e-06, 2.7042e-01, 2.7120e-03, + 2DIAGNOSTIC, 41, -4.505254304446e-01, 2.484810022772e-06, 2.7256e-01, 2.1460e-03, + 2DIAGNOSTIC, 42, -4.505256567495e-01, 1.838293598157e-06, 2.7539e-01, 2.8288e-03, + 2DIAGNOSTIC, 43, -4.505256800574e-01, 1.413712581798e-06, 2.7792e-01, 2.5239e-03, + 2DIAGNOSTIC, 44, -4.505256840952e-01, 1.037439673928e-06, 2.8041e-01, 2.4941e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.252473952369e-01, 1.797693134862e+308, 3.4802e-01, 6.7605e-02, + 2DIAGNOSTIC, 2, -3.256635904570e-01, 1.797693134862e+308, 3.5855e-01, 1.0531e-02, + 2DIAGNOSTIC, 3, -3.262722607084e-01, 1.797693134862e+308, 3.6913e-01, 1.0586e-02, + 2DIAGNOSTIC, 4, -3.274202618051e-01, 1.797693134862e+308, 3.8041e-01, 1.1281e-02, + 2DIAGNOSTIC, 5, -3.289569720145e-01, 1.797693134862e+308, 3.9213e-01, 1.1713e-02, + 2DIAGNOSTIC, 6, -3.342620233964e-01, 1.797693134862e+308, 4.0375e-01, 1.1620e-02, + 2DIAGNOSTIC, 7, -3.394959314029e-01, 1.797693134862e+308, 4.1549e-01, 1.1748e-02, + 2DIAGNOSTIC, 8, -3.463591462124e-01, 1.797693134862e+308, 4.2725e-01, 1.1759e-02, + 2DIAGNOSTIC, 9, -3.536269535087e-01, 1.797693134862e+308, 4.4023e-01, 1.2979e-02, + 2DIAGNOSTIC, 10, -3.550735980808e-01, 6.331874372975e-03, 4.5518e-01, 1.4948e-02, + 2DIAGNOSTIC, 11, -3.562784712598e-01, 6.359067100336e-03, 4.6801e-01, 1.2828e-02, + 2DIAGNOSTIC, 12, -3.647363812402e-01, 6.418948725836e-03, 4.7903e-01, 1.1017e-02, + 2DIAGNOSTIC, 13, -3.816743258607e-01, 6.968608334463e-03, 4.9030e-01, 1.1270e-02, + 2DIAGNOSTIC, 14, -3.974007054284e-01, 7.744188875808e-03, 5.0055e-01, 1.0253e-02, + 2DIAGNOSTIC, 15, -4.436428503392e-01, 1.018690579139e-02, 5.1696e-01, 1.6415e-02, + 2DIAGNOSTIC, 16, -4.716735278595e-01, 1.287562177946e-02, 5.2765e-01, 1.0690e-02, + 2DIAGNOSTIC, 17, -4.783915514745e-01, 1.450929737252e-02, 5.4009e-01, 1.2438e-02, + 2DIAGNOSTIC, 18, -4.936984912099e-01, 1.550783394411e-02, 5.5652e-01, 1.6424e-02, + 2DIAGNOSTIC, 19, -5.011546900557e-01, 1.550722405666e-02, 5.6705e-01, 1.0539e-02, + 2DIAGNOSTIC, 20, -5.149628274205e-01, 1.460227187898e-02, 5.8013e-01, 1.3080e-02, + 2DIAGNOSTIC, 21, -5.211832033471e-01, 1.269837105358e-02, 5.9133e-01, 1.1198e-02, + 2DIAGNOSTIC, 22, -5.215934498418e-01, 1.014643214261e-02, 6.0575e-01, 1.4415e-02, + 2DIAGNOSTIC, 23, -5.216774435886e-01, 7.477892591949e-03, 6.1612e-01, 1.0368e-02, + 2DIAGNOSTIC, 24, -5.219238552322e-01, 4.830916378482e-03, 6.2771e-01, 1.1599e-02, + 2DIAGNOSTIC, 25, -5.220110020753e-01, 3.250124365451e-03, 6.4090e-01, 1.3181e-02, + 2DIAGNOSTIC, 26, -5.220429847889e-01, 2.249090786729e-03, 6.5371e-01, 1.2817e-02, + 2DIAGNOSTIC, 27, -5.220205729726e-01, 1.292711757874e-03, 6.6485e-01, 1.1141e-02, + 2DIAGNOSTIC, 28, -5.220050301635e-01, 6.643981024882e-04, 6.7461e-01, 9.7532e-03, + 2DIAGNOSTIC, 29, -5.219980691304e-01, 1.892045964012e-04, 6.8478e-01, 1.0172e-02, + 2DIAGNOSTIC, 30, -5.219999196675e-01, 3.303125229832e-05, 6.9457e-01, 9.7871e-03, + 2DIAGNOSTIC, 31, -5.219946430946e-01, 1.655908415678e-05, 7.0661e-01, 1.2048e-02, + 2DIAGNOSTIC, 32, -5.220063186429e-01, 8.464846413744e-06, 7.1692e-01, 1.0310e-02, + 2DIAGNOSTIC, 33, -5.220129833624e-01, 1.928300550770e-06, 7.2836e-01, 1.1440e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.396368072690e-01, 1.797693134862e+308, 9.3174e-01, 2.0338e-01, + Elapsed time (stage 0): 9.5837e-01 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.704145690970e-01, 1.797693134862e+308, 3.9203e-02, 3.9202e-02, + 2DIAGNOSTIC, 2, -9.719536698543e-01, 1.797693134862e+308, 4.0493e-02, 1.2901e-03, + 2DIAGNOSTIC, 3, -9.752234424306e-01, 1.797693134862e+308, 4.1816e-02, 1.3230e-03, + 2DIAGNOSTIC, 4, -9.822027412191e-01, 1.797693134862e+308, 4.3167e-02, 1.3511e-03, + 2DIAGNOSTIC, 5, -9.928098720067e-01, 1.797693134862e+308, 4.4538e-02, 1.3711e-03, + 2DIAGNOSTIC, 6, -1.017759679063e+00, 1.797693134862e+308, 4.6106e-02, 1.5681e-03, + 2DIAGNOSTIC, 7, -1.025193932032e+00, 1.797693134862e+308, 4.8192e-02, 2.0852e-03, + 2DIAGNOSTIC, 8, -1.027190926020e+00, 1.797693134862e+308, 4.9730e-02, 1.5380e-03, + 2DIAGNOSTIC, 9, -1.030370515457e+00, 1.797693134862e+308, 5.1091e-02, 1.3618e-03, + 2DIAGNOSTIC, 10, -1.031878801558e+00, 4.912798769340e-03, 5.2616e-02, 1.5249e-03, + 2DIAGNOSTIC, 11, -1.034175715947e+00, 4.187084547065e-03, 5.4536e-02, 1.9200e-03, + 2DIAGNOSTIC, 12, -1.037903716286e+00, 3.332585463915e-03, 5.6243e-02, 1.7071e-03, + 2DIAGNOSTIC, 13, -1.042318725835e+00, 2.483068993484e-03, 5.8617e-02, 2.3739e-03, + 2DIAGNOSTIC, 14, -1.042257973716e+00, 1.672426730380e-03, 6.0087e-02, 1.4701e-03, + 2DIAGNOSTIC, 15, -1.042956288520e+00, 1.021837083193e-03, 6.1592e-02, 1.5049e-03, + 2DIAGNOSTIC, 16, -1.045764000688e+00, 8.436052002383e-04, 6.3085e-02, 1.4930e-03, + 2DIAGNOSTIC, 17, -1.047883374549e+00, 7.637139788311e-04, 6.4789e-02, 1.7040e-03, + 2DIAGNOSTIC, 18, -1.051024614862e+00, 6.999124728194e-04, 6.6999e-02, 2.2101e-03, + 2DIAGNOSTIC, 19, -1.050656210399e+00, 6.197049681334e-04, 6.8472e-02, 1.4729e-03, + 2DIAGNOSTIC, 20, -1.050965107532e+00, 5.171595661490e-04, 7.0194e-02, 1.7219e-03, + 2DIAGNOSTIC, 21, -1.051826405021e+00, 4.173677793929e-04, 7.1687e-02, 1.4930e-03, + 2DIAGNOSTIC, 22, -1.051149550526e+00, 3.239901968215e-04, 7.3397e-02, 1.7099e-03, + 2DIAGNOSTIC, 23, -1.051637831101e+00, 2.681352601507e-04, 7.5108e-02, 1.7111e-03, + 2DIAGNOSTIC, 24, -1.050857274989e+00, 1.827666702016e-04, 7.6615e-02, 1.5070e-03, + 2DIAGNOSTIC, 25, -1.050068963797e+00, 8.643117760651e-05, 7.8093e-02, 1.4780e-03, + 2DIAGNOSTIC, 26, -1.050776645394e+00, 2.674042198682e-05, 7.9805e-02, 1.7121e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.998416058376e-01, 1.797693134862e+308, 1.2369e-01, 4.3888e-02, + 2DIAGNOSTIC, 2, -6.992832343874e-01, 1.797693134862e+308, 1.2655e-01, 2.8539e-03, + 2DIAGNOSTIC, 3, -7.013270197516e-01, 1.797693134862e+308, 1.2939e-01, 2.8422e-03, + 2DIAGNOSTIC, 4, -7.047020092938e-01, 1.797693134862e+308, 1.3201e-01, 2.6181e-03, + 2DIAGNOSTIC, 5, -7.096042984911e-01, 1.797693134862e+308, 1.3439e-01, 2.3799e-03, + 2DIAGNOSTIC, 6, -7.178594349499e-01, 1.797693134862e+308, 1.3674e-01, 2.3570e-03, + 2DIAGNOSTIC, 7, -7.272344146767e-01, 1.797693134862e+308, 1.3942e-01, 2.6731e-03, + 2DIAGNOSTIC, 8, -7.406593827025e-01, 1.797693134862e+308, 1.4378e-01, 4.3612e-03, + 2DIAGNOSTIC, 9, -7.397777107700e-01, 1.797693134862e+308, 1.4603e-01, 2.2511e-03, + 2DIAGNOSTIC, 10, -7.408016193253e-01, 4.587711047227e-03, 1.4854e-01, 2.5120e-03, + 2DIAGNOSTIC, 11, -7.427776131944e-01, 4.258702051589e-03, 1.5114e-01, 2.6011e-03, + 2DIAGNOSTIC, 12, -7.454335636513e-01, 3.665403740875e-03, 1.5353e-01, 2.3911e-03, + 2DIAGNOSTIC, 13, -7.505963060127e-01, 3.046088482610e-03, 1.5594e-01, 2.4042e-03, + 2DIAGNOSTIC, 14, -7.537951367970e-01, 2.425076824976e-03, 1.5833e-01, 2.3961e-03, + 2DIAGNOSTIC, 15, -7.606773402522e-01, 1.976641432271e-03, 1.6251e-01, 4.1780e-03, + 2DIAGNOSTIC, 16, -7.640910169700e-01, 1.683151990934e-03, 1.6697e-01, 4.4570e-03, + 2DIAGNOSTIC, 17, -7.640611452326e-01, 1.474992851687e-03, 1.6950e-01, 2.5339e-03, + 2DIAGNOSTIC, 18, -7.647497837478e-01, 1.460783003796e-03, 1.7212e-01, 2.6212e-03, + 2DIAGNOSTIC, 19, -7.656148184203e-01, 1.312272631315e-03, 1.7474e-01, 2.6159e-03, + 2DIAGNOSTIC, 20, -7.663929276784e-01, 1.090381041756e-03, 1.7750e-01, 2.7609e-03, + 2DIAGNOSTIC, 21, -7.673110763989e-01, 8.412511332143e-04, 1.8036e-01, 2.8601e-03, + 2DIAGNOSTIC, 22, -7.686345900885e-01, 6.064211210620e-04, 1.8344e-01, 3.0789e-03, + 2DIAGNOSTIC, 23, -7.691472043548e-01, 4.310558228852e-04, 1.8622e-01, 2.7821e-03, + 2DIAGNOSTIC, 24, -7.692736542840e-01, 2.810394474210e-04, 1.8904e-01, 2.8131e-03, + 2DIAGNOSTIC, 25, -7.693184417736e-01, 2.217696495753e-04, 1.9181e-01, 2.7730e-03, + 2DIAGNOSTIC, 26, -7.693393846591e-01, 1.970131751072e-04, 1.9425e-01, 2.4431e-03, + 2DIAGNOSTIC, 27, -7.694041719944e-01, 1.559089896925e-04, 1.9700e-01, 2.7449e-03, + 2DIAGNOSTIC, 28, -7.695262009936e-01, 1.140626612591e-04, 1.9976e-01, 2.7640e-03, + 2DIAGNOSTIC, 29, -7.695272571481e-01, 7.593881629790e-05, 2.0228e-01, 2.5148e-03, + 2DIAGNOSTIC, 30, -7.695778079599e-01, 4.384165789882e-05, 2.0507e-01, 2.7928e-03, + 2DIAGNOSTIC, 31, -7.697131262108e-01, 2.235685286113e-05, 2.0790e-01, 2.8269e-03, + 2DIAGNOSTIC, 32, -7.696754721186e-01, 1.526248707329e-05, 2.1068e-01, 2.7840e-03, + 2DIAGNOSTIC, 33, -7.696351532227e-01, 1.266343985443e-05, 2.1344e-01, 2.7580e-03, + 2DIAGNOSTIC, 34, -7.696083313365e-01, 1.024792942190e-05, 2.1619e-01, 2.7540e-03, + 2DIAGNOSTIC, 35, -7.695324304478e-01, 6.760699885960e-06, 2.1870e-01, 2.5039e-03, + 2DIAGNOSTIC, 36, -7.696507725390e-01, 4.364269552616e-06, 2.2120e-01, 2.5022e-03, + 2DIAGNOSTIC, 37, -7.698436350937e-01, 4.328956439745e-06, 2.2368e-01, 2.4788e-03, + 2DIAGNOSTIC, 38, -7.702181734990e-01, 8.884117487215e-06, 2.2618e-01, 2.4998e-03, + 2DIAGNOSTIC, 39, -7.708299421689e-01, 1.830560446407e-05, 2.2870e-01, 2.5289e-03, + 2DIAGNOSTIC, 40, -7.740545036929e-01, 5.631484579762e-05, 2.3251e-01, 3.8071e-03, + 2DIAGNOSTIC, 41, -7.749637806864e-01, 9.598032042306e-05, 2.3546e-01, 2.9521e-03, + 2DIAGNOSTIC, 42, -7.747640376005e-01, 1.226512821554e-04, 2.3873e-01, 3.2701e-03, + 2DIAGNOSTIC, 43, -7.756783031290e-01, 1.445959721221e-04, 2.4133e-01, 2.5990e-03, + 2DIAGNOSTIC, 44, -7.763040514106e-01, 1.566275321208e-04, 2.4465e-01, 3.3140e-03, + 2DIAGNOSTIC, 45, -7.770161072019e-01, 1.579747530244e-04, 2.4839e-01, 3.7429e-03, + 2DIAGNOSTIC, 46, -7.772736940162e-01, 1.471641162939e-04, 2.5092e-01, 2.5258e-03, + 2DIAGNOSTIC, 47, -7.778124678910e-01, 1.291106072041e-04, 2.5378e-01, 2.8670e-03, + 2DIAGNOSTIC, 48, -7.779808686511e-01, 1.039240295801e-04, 2.5659e-01, 2.8079e-03, + 2DIAGNOSTIC, 49, -7.779726236688e-01, 7.379198226329e-05, 2.5945e-01, 2.8598e-03, + 2DIAGNOSTIC, 50, -7.779575668195e-01, 6.181109851420e-05, 2.6201e-01, 2.5640e-03, + 2DIAGNOSTIC, 51, -7.779432018300e-01, 5.117645909549e-05, 2.6481e-01, 2.7940e-03, + 2DIAGNOSTIC, 52, -7.779887014957e-01, 3.487745238709e-05, 2.6765e-01, 2.8369e-03, + 2DIAGNOSTIC, 53, -7.777310622271e-01, 2.047646117273e-05, 2.7019e-01, 2.5411e-03, + 2DIAGNOSTIC, 54, -7.778265020279e-01, 9.701804285972e-06, 2.7302e-01, 2.8319e-03, + 2DIAGNOSTIC, 55, -7.779135415792e-01, 3.866852887949e-06, 2.7590e-01, 2.8801e-03, + 2DIAGNOSTIC, 56, -7.781809197987e-01, 1.307238110673e-06, 2.7999e-01, 4.0879e-03, + 2DIAGNOSTIC, 57, -7.781274234525e-01, 1.884828242895e-06, 2.8250e-01, 2.5141e-03, + 2DIAGNOSTIC, 58, -7.780935808916e-01, 3.245215703565e-06, 2.8506e-01, 2.5630e-03, + 2DIAGNOSTIC, 59, -7.781024724913e-01, 4.334346261826e-06, 2.8758e-01, 2.5191e-03, + 2DIAGNOSTIC, 60, -7.781145363515e-01, 4.956677118018e-06, 2.9015e-01, 2.5640e-03, + 2DIAGNOSTIC, 61, -7.781365229606e-01, 5.129510252475e-06, 2.9269e-01, 2.5411e-03, + 2DIAGNOSTIC, 62, -7.783007950199e-01, 6.173941185385e-06, 2.9623e-01, 3.5470e-03, + 2DIAGNOSTIC, 63, -7.784383060116e-01, 5.925125843239e-06, 3.0057e-01, 4.3399e-03, + 2DIAGNOSTIC, 64, -7.783732455099e-01, 5.329902440756e-06, 3.0305e-01, 2.4719e-03, + 2DIAGNOSTIC, 65, -7.783834514953e-01, 4.829194696486e-06, 3.0551e-01, 2.4590e-03, + 2DIAGNOSTIC, 66, -7.783964875220e-01, 5.517077635110e-06, 3.0797e-01, 2.4612e-03, + 2DIAGNOSTIC, 67, -7.784113915769e-01, 5.466560406168e-06, 3.1041e-01, 2.4388e-03, + 2DIAGNOSTIC, 68, -7.784275925006e-01, 4.827009191508e-06, 3.1286e-01, 2.4562e-03, + 2DIAGNOSTIC, 69, -7.784479363955e-01, 3.961311018395e-06, 3.1534e-01, 2.4810e-03, + 2DIAGNOSTIC, 70, -7.785445924014e-01, 3.380411164869e-06, 3.1809e-01, 2.7509e-03, + 2DIAGNOSTIC, 71, -7.785823658858e-01, 2.812890442660e-06, 3.2178e-01, 3.6891e-03, + 2DIAGNOSTIC, 72, -7.784711097129e-01, 2.284685472184e-06, 3.2452e-01, 2.7359e-03, + 2DIAGNOSTIC, 73, -7.784840223422e-01, 2.395810592595e-06, 3.2687e-01, 2.3549e-03, + 2DIAGNOSTIC, 74, -7.784347694484e-01, 1.732732169279e-06, 3.2945e-01, 2.5799e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.786605107096e-01, 1.797693134862e+308, 3.9407e-01, 6.4614e-02, + 2DIAGNOSTIC, 2, -5.790951610258e-01, 1.797693134862e+308, 4.0524e-01, 1.1176e-02, + 2DIAGNOSTIC, 3, -5.796656963298e-01, 1.797693134862e+308, 4.1706e-01, 1.1821e-02, + 2DIAGNOSTIC, 4, -5.802474430468e-01, 1.797693134862e+308, 4.2959e-01, 1.2522e-02, + 2DIAGNOSTIC, 5, -5.807206950664e-01, 1.797693134862e+308, 4.4069e-01, 1.1101e-02, + 2DIAGNOSTIC, 6, -5.811620030323e-01, 1.797693134862e+308, 4.5195e-01, 1.1267e-02, + 2DIAGNOSTIC, 7, -5.817666449353e-01, 1.797693134862e+308, 4.6475e-01, 1.2795e-02, + 2DIAGNOSTIC, 8, -5.831882705909e-01, 1.797693134862e+308, 4.8359e-01, 1.8843e-02, + 2DIAGNOSTIC, 9, -5.833112984353e-01, 1.797693134862e+308, 4.9699e-01, 1.3400e-02, + 2DIAGNOSTIC, 10, -5.834686239255e-01, 5.776810170512e-04, 5.0970e-01, 1.2706e-02, + 2DIAGNOSTIC, 11, -5.839506166590e-01, 5.175498400807e-04, 5.2184e-01, 1.2145e-02, + 2DIAGNOSTIC, 12, -5.845467337166e-01, 4.621178937324e-04, 5.3455e-01, 1.2711e-02, + 2DIAGNOSTIC, 13, -5.850244494624e-01, 4.116712011046e-04, 5.4663e-01, 1.2076e-02, + 2DIAGNOSTIC, 14, -5.856782665640e-01, 3.741946405018e-04, 5.6008e-01, 1.3445e-02, + 2DIAGNOSTIC, 15, -5.858318359684e-01, 3.285037519424e-04, 5.7546e-01, 1.5389e-02, + 2DIAGNOSTIC, 16, -5.858804933977e-01, 2.736383567371e-04, 5.9027e-01, 1.4810e-02, + 2DIAGNOSTIC, 17, -5.858890247965e-01, 2.167240938572e-04, 6.0380e-01, 1.3523e-02, + 2DIAGNOSTIC, 18, -5.858764922770e-01, 1.843864809018e-04, 6.1742e-01, 1.3620e-02, + 2DIAGNOSTIC, 19, -5.858799450465e-01, 1.417666534630e-04, 6.3237e-01, 1.4949e-02, + 2DIAGNOSTIC, 20, -5.858788551512e-01, 9.411788672478e-05, 6.4737e-01, 1.5001e-02, + 2DIAGNOSTIC, 21, -5.858764228948e-01, 5.348213074207e-05, 6.6085e-01, 1.3479e-02, + 2DIAGNOSTIC, 22, -5.858704657152e-01, 2.469344014987e-05, 6.7422e-01, 1.3376e-02, + 2DIAGNOSTIC, 23, -5.858675975752e-01, 5.962581126402e-06, 6.8574e-01, 1.1519e-02, + 2DIAGNOSTIC, 24, -5.858650725754e-01, 1.507329914698e-06, 6.9966e-01, 1.3921e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.840278233806e-01, 1.797693134862e+308, 9.2198e-01, 2.2231e-01, + Elapsed time (stage 1): 9.4521e-01 + + +Total elapsed time: 1.9047e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:29:03 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 52 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 74 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 90.62% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 90.62% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[ 9552 5710 1825 5649 12969 2195 10265 1342 5991 1776 6133 2513 + 333 8157 4669 9871 8731 1293 478 2034 537 319 729 972 + 663 3815 472 636 1227 332 219 0 689 0 0 477 + 0 0 0 0 0 268 0 0 0 180 0 0 + 0 0 0 0] +[109567 51534 34418 37177 58444 36847 72898 16652 31627 24501 + 17418 15016 13389 19184 16420 15723 16143 13441 16589 14802 + 4888 11082 3958 10696 12135 9694 7794 8508 2264 2414 + 7571 1893 5949 2353 1569 3859 1528 2625 2343 1864 + 1472 2023 1531 1017 1237 938 1361 734 1862 502 + 986 700] +[ 156 1008 391 544 8042 1915 195 474 0 1629 0 751 + 259 166 471 177 13198 8443 0 157 398 0 24351 0 + 1276 0 0 0 182 1224 272 4781 0 2005 0 190 + 283 3086 22022 1005 0 170 0 893 1427 1044 0 0 + 352 8801 8844 244] +[ 7147 7833 13131 16570 4481 62657 10659 7053 8366 36915 4571 1576 + 14721 2797 10964 6236 3293 1223 1549 2485 7014 1059 3392 6186 + 4406 1861 1930 2755 9049 18798 8395 1240 1907 2833 1827 7714 + 8717 56804 467 12854 11740 13917 16770 12058 21768 15251 1105 1753 + 4806 95934 12469 8965] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:39:33 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:39:38 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:21 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:21 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:22 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:32 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:35 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC008 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:44:42 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:45:07 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:48:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:48:09 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:49:27 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:49:27 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55f1f1fead20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [76.2585, 124.828, -128.415] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f1f1e61730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe4270f6010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55f1f1fee020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 63.4059, -114.851] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f1f1ff40c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe423a37010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55f1f2004840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [76.2585, 124.828, -128.415] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f1f1ff0890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe41ed63010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55f1f20083e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 63.4059, -114.851] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f1f1ff7130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe41b6a4010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.986998613173e-01, 1.797693134862e+308, 2.3704e-01, 2.3704e-01, + 2DIAGNOSTIC, 2, -5.005378353914e-01, 1.797693134862e+308, 2.3834e-01, 1.2991e-03, + 2DIAGNOSTIC, 3, -5.032588536127e-01, 1.797693134862e+308, 2.3972e-01, 1.3790e-03, + 2DIAGNOSTIC, 4, -5.080878994833e-01, 1.797693134862e+308, 2.4098e-01, 1.2598e-03, + 2DIAGNOSTIC, 5, -5.151865110675e-01, 1.797693134862e+308, 2.4223e-01, 1.2469e-03, + 2DIAGNOSTIC, 6, -5.246385470748e-01, 1.797693134862e+308, 2.4389e-01, 1.6601e-03, + 2DIAGNOSTIC, 7, -5.356382533998e-01, 1.797693134862e+308, 2.4551e-01, 1.6220e-03, + 2DIAGNOSTIC, 8, -5.388319282423e-01, 1.797693134862e+308, 2.4689e-01, 1.3752e-03, + 2DIAGNOSTIC, 9, -5.506169506957e-01, 1.797693134862e+308, 2.4832e-01, 1.4310e-03, + 2DIAGNOSTIC, 10, -5.630517103453e-01, 8.005554489543e-03, 2.4997e-01, 1.6570e-03, + 2DIAGNOSTIC, 11, -5.897192229634e-01, 8.981942439936e-03, 2.5257e-01, 2.5928e-03, + 2DIAGNOSTIC, 12, -5.937848689858e-01, 9.212216656921e-03, 2.5437e-01, 1.8079e-03, + 2DIAGNOSTIC, 13, -5.944015207750e-01, 8.728335886692e-03, 2.5623e-01, 1.8542e-03, + 2DIAGNOSTIC, 14, -5.965129597650e-01, 7.801334897234e-03, 2.5778e-01, 1.5471e-03, + 2DIAGNOSTIC, 15, -6.024990514629e-01, 6.734899178581e-03, 2.6051e-01, 2.7339e-03, + 2DIAGNOSTIC, 16, -6.035020401727e-01, 5.513386825304e-03, 2.6209e-01, 1.5759e-03, + 2DIAGNOSTIC, 17, -6.055197410150e-01, 4.340333150389e-03, 2.6394e-01, 1.8542e-03, + 2DIAGNOSTIC, 18, -6.067304554092e-01, 3.042132035542e-03, 2.6649e-01, 2.5511e-03, + 2DIAGNOSTIC, 19, -6.079121945378e-01, 1.957186837369e-03, 2.6809e-01, 1.5950e-03, + 2DIAGNOSTIC, 20, -6.100238843663e-01, 1.155629510989e-03, 2.6965e-01, 1.5659e-03, + 2DIAGNOSTIC, 21, -6.115694796064e-01, 1.001927111513e-03, 2.7123e-01, 1.5800e-03, + 2DIAGNOSTIC, 22, -6.121040832760e-01, 8.764894926828e-04, 2.7305e-01, 1.8141e-03, + 2DIAGNOSTIC, 23, -6.123058506209e-01, 6.996975743038e-04, 2.7463e-01, 1.5860e-03, + 2DIAGNOSTIC, 24, -6.131232759997e-01, 5.314430279097e-04, 2.7627e-01, 1.6379e-03, + 2DIAGNOSTIC, 25, -6.226005876469e-01, 6.337928908415e-04, 2.7887e-01, 2.5961e-03, + 2DIAGNOSTIC, 26, -6.241937658223e-01, 7.115842989261e-04, 2.8070e-01, 1.8311e-03, + 2DIAGNOSTIC, 27, -6.249429443903e-01, 7.683851366763e-04, 2.8238e-01, 1.6820e-03, + 2DIAGNOSTIC, 28, -6.251145622353e-01, 7.757300754345e-04, 2.8421e-01, 1.8349e-03, + 2DIAGNOSTIC, 29, -6.251868412876e-01, 7.298701798478e-04, 2.8631e-01, 2.0990e-03, + 2DIAGNOSTIC, 30, -6.252167262136e-01, 6.503465035907e-04, 2.8819e-01, 1.8790e-03, + 2DIAGNOSTIC, 31, -6.242885633829e-01, 5.237822120386e-04, 2.8999e-01, 1.7982e-03, + 2DIAGNOSTIC, 32, -6.243104621861e-01, 3.672583594624e-04, 2.9161e-01, 1.6210e-03, + 2DIAGNOSTIC, 33, -6.238705195232e-01, 1.841538906234e-04, 2.9321e-01, 1.5950e-03, + 2DIAGNOSTIC, 34, -6.239262605723e-01, 4.111579993957e-06, 2.9484e-01, 1.6301e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.816106944894e-01, 1.797693134862e+308, 5.3571e-01, 2.4088e-01, + 2DIAGNOSTIC, 2, -4.805275601003e-01, 1.797693134862e+308, 5.3817e-01, 2.4579e-03, + 2DIAGNOSTIC, 3, -4.811596477719e-01, 1.797693134862e+308, 5.4020e-01, 2.0289e-03, + 2DIAGNOSTIC, 4, -4.816025412033e-01, 1.797693134862e+308, 5.4212e-01, 1.9181e-03, + 2DIAGNOSTIC, 5, -4.825858840889e-01, 1.797693134862e+308, 5.4421e-01, 2.0950e-03, + 2DIAGNOSTIC, 6, -4.845506737745e-01, 1.797693134862e+308, 5.4756e-01, 3.3491e-03, + 2DIAGNOSTIC, 7, -4.852437075709e-01, 1.797693134862e+308, 5.4993e-01, 2.3658e-03, + 2DIAGNOSTIC, 8, -4.854105856028e-01, 1.797693134862e+308, 5.5201e-01, 2.0809e-03, + 2DIAGNOSTIC, 9, -4.857226024158e-01, 1.797693134862e+308, 5.5421e-01, 2.2020e-03, + 2DIAGNOSTIC, 10, -4.857894083843e-01, 8.101681029860e-04, 5.5697e-01, 2.7530e-03, + 2DIAGNOSTIC, 11, -4.857683723806e-01, 7.300590811563e-04, 5.5984e-01, 2.8791e-03, + 2DIAGNOSTIC, 12, -4.857243784209e-01, 5.425197301286e-04, 5.6285e-01, 3.0029e-03, + 2DIAGNOSTIC, 13, -4.857204150527e-01, 3.647900149055e-04, 5.6616e-01, 3.3171e-03, + 2DIAGNOSTIC, 14, -4.858044732434e-01, 2.017260118527e-04, 5.6912e-01, 2.9581e-03, + 2DIAGNOSTIC, 15, -4.859536862713e-01, 8.460564999171e-05, 5.7143e-01, 2.3079e-03, + 2DIAGNOSTIC, 16, -4.862257704655e-01, 5.607082951785e-05, 5.7398e-01, 2.5461e-03, + 2DIAGNOSTIC, 17, -4.870358610255e-01, 7.766392085299e-05, 5.7619e-01, 2.2149e-03, + 2DIAGNOSTIC, 18, -4.878904241100e-01, 1.222641975335e-04, 5.7839e-01, 2.1980e-03, + 2DIAGNOSTIC, 19, -4.906875734157e-01, 2.463569317384e-04, 5.8065e-01, 2.2600e-03, + 2DIAGNOSTIC, 20, -4.924631752443e-01, 3.872905683373e-04, 5.8297e-01, 2.3210e-03, + 2DIAGNOSTIC, 21, -4.986082484989e-01, 6.487080981583e-04, 5.8655e-01, 3.5789e-03, + 2DIAGNOSTIC, 22, -4.980339021176e-01, 8.057771016881e-04, 5.8967e-01, 3.1190e-03, + 2DIAGNOSTIC, 23, -4.985345198783e-01, 8.886802603569e-04, 5.9217e-01, 2.4979e-03, + 2DIAGNOSTIC, 24, -4.989265697639e-01, 8.937897441204e-04, 5.9465e-01, 2.4829e-03, + 2DIAGNOSTIC, 25, -5.000341698105e-01, 8.425068942826e-04, 5.9743e-01, 2.7761e-03, + 2DIAGNOSTIC, 26, -5.001227801013e-01, 7.221754333981e-04, 6.0028e-01, 2.8522e-03, + 2DIAGNOSTIC, 27, -4.997182419154e-01, 5.527255755020e-04, 6.0427e-01, 3.9971e-03, + 2DIAGNOSTIC, 28, -4.997709974657e-01, 3.638110124911e-04, 6.0726e-01, 2.9862e-03, + 2DIAGNOSTIC, 29, -4.996389322430e-01, 2.072323522915e-04, 6.1092e-01, 3.6550e-03, + 2DIAGNOSTIC, 30, -4.996271472552e-01, 7.210043349035e-05, 6.1416e-01, 3.2399e-03, + 2DIAGNOSTIC, 31, -4.996044710372e-01, 5.406556449421e-05, 6.1678e-01, 2.6200e-03, + 2DIAGNOSTIC, 32, -4.998423038489e-01, 2.630171600575e-05, 6.1932e-01, 2.5411e-03, + 2DIAGNOSTIC, 33, -4.997639209563e-01, 5.216369063685e-06, 6.2184e-01, 2.5229e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.757252778924e-01, 1.797693134862e+308, 8.7280e-01, 2.5096e-01, + 2DIAGNOSTIC, 2, -3.767176563335e-01, 1.797693134862e+308, 8.8632e-01, 1.3526e-02, + 2DIAGNOSTIC, 3, -3.778022267141e-01, 1.797693134862e+308, 9.0007e-01, 1.3743e-02, + 2DIAGNOSTIC, 4, -3.788928722314e-01, 1.797693134862e+308, 9.1313e-01, 1.3067e-02, + 2DIAGNOSTIC, 5, -3.803660435108e-01, 1.797693134862e+308, 9.2768e-01, 1.4549e-02, + 2DIAGNOSTIC, 6, -3.808313018914e-01, 1.797693134862e+308, 9.4194e-01, 1.4258e-02, + 2DIAGNOSTIC, 7, -3.814699297070e-01, 1.797693134862e+308, 9.5413e-01, 1.2192e-02, + 2DIAGNOSTIC, 8, -3.822766111887e-01, 1.797693134862e+308, 9.6855e-01, 1.4421e-02, + 2DIAGNOSTIC, 9, -3.826905468042e-01, 1.797693134862e+308, 9.8112e-01, 1.2567e-02, + 2DIAGNOSTIC, 10, -3.847760733949e-01, 1.400488297918e-03, 9.9370e-01, 1.2583e-02, + 2DIAGNOSTIC, 11, -3.854061960268e-01, 1.254916554444e-03, 1.0083e+00, 1.4594e-02, + 2DIAGNOSTIC, 12, -3.855515274713e-01, 1.092697646977e-03, 1.0214e+00, 1.3101e-02, + 2DIAGNOSTIC, 13, -3.862654628580e-01, 9.611325382247e-04, 1.0359e+00, 1.4527e-02, + 2DIAGNOSTIC, 14, -3.903432543893e-01, 1.032819609445e-03, 1.0523e+00, 1.6339e-02, + 2DIAGNOSTIC, 15, -3.934956325718e-01, 1.222388882031e-03, 1.0647e+00, 1.2462e-02, + 2DIAGNOSTIC, 16, -4.004682207451e-01, 1.616268091881e-03, 1.0797e+00, 1.4985e-02, + 2DIAGNOSTIC, 17, -4.022882994358e-01, 1.916196670869e-03, 1.0944e+00, 1.4673e-02, + 2DIAGNOSTIC, 18, -4.032854465004e-01, 2.081707270744e-03, 1.1090e+00, 1.4598e-02, + 2DIAGNOSTIC, 19, -4.113233137838e-01, 2.359902062671e-03, 1.1218e+00, 1.2806e-02, + 2DIAGNOSTIC, 20, -4.331578309014e-01, 3.245321617189e-03, 1.1372e+00, 1.5387e-02, + 2DIAGNOSTIC, 21, -4.433092369094e-01, 4.084440707143e-03, 1.1551e+00, 1.7932e-02, + 2DIAGNOSTIC, 22, -4.458579628988e-01, 4.549790181902e-03, 1.1691e+00, 1.3990e-02, + 2DIAGNOSTIC, 23, -4.489028990317e-01, 4.674020837383e-03, 1.1838e+00, 1.4659e-02, + 2DIAGNOSTIC, 24, -4.596720020777e-01, 4.783409176680e-03, 1.1981e+00, 1.4387e-02, + 2DIAGNOSTIC, 25, -5.442820323746e-01, 6.837114636986e-03, 1.2143e+00, 1.6168e-02, + 2DIAGNOSTIC, 26, -5.874827693179e-01, 9.280407418984e-03, 1.2285e+00, 1.4144e-02, + 2DIAGNOSTIC, 27, -6.356979144216e-01, 1.182359317510e-02, 1.2425e+00, 1.4007e-02, + 2DIAGNOSTIC, 28, -6.487833583284e-01, 1.333588310472e-02, 1.2603e+00, 1.7844e-02, + 2DIAGNOSTIC, 29, -6.545766254323e-01, 1.375856435591e-02, 1.2749e+00, 1.4623e-02, + 2DIAGNOSTIC, 30, -6.750476784717e-01, 1.371932933600e-02, 1.2886e+00, 1.3670e-02, + 2DIAGNOSTIC, 31, -6.905146755757e-01, 1.288388815363e-02, 1.3005e+00, 1.1909e-02, + 2DIAGNOSTIC, 32, -6.923745998659e-01, 1.101533269297e-02, 1.3148e+00, 1.4256e-02, + 2DIAGNOSTIC, 33, -6.930604395372e-01, 8.381069029144e-03, 1.3268e+00, 1.2057e-02, + 2DIAGNOSTIC, 34, -6.942600341523e-01, 5.380730472249e-03, 1.3402e+00, 1.3387e-02, + 2DIAGNOSTIC, 35, -6.958933848591e-01, 3.567826223713e-03, 1.3576e+00, 1.7365e-02, + 2DIAGNOSTIC, 36, -6.959763782529e-01, 2.242816551551e-03, 1.3709e+00, 1.3334e-02, + 2DIAGNOSTIC, 37, -6.963095284313e-01, 1.566200047697e-03, 1.3826e+00, 1.1653e-02, + 2DIAGNOSTIC, 38, -6.965858707832e-01, 9.979643437619e-04, 1.3943e+00, 1.1761e-02, + 2DIAGNOSTIC, 39, -6.969256220791e-01, 4.592563465101e-04, 1.4083e+00, 1.3969e-02, + 2DIAGNOSTIC, 40, -6.974194638413e-01, 2.018035834099e-04, 1.4241e+00, 1.5802e-02, + 2DIAGNOSTIC, 41, -6.974973973105e-01, 1.524924742477e-04, 1.4397e+00, 1.5624e-02, + 2DIAGNOSTIC, 42, -6.976639805130e-01, 1.188927842865e-04, 1.4524e+00, 1.2662e-02, + 2DIAGNOSTIC, 43, -6.977611716200e-01, 8.595472357301e-05, 1.4659e+00, 1.3504e-02, + 2DIAGNOSTIC, 44, -6.977224859004e-01, 6.064901549294e-05, 1.4794e+00, 1.3493e-02, + 2DIAGNOSTIC, 45, -6.978046374977e-01, 5.168411426863e-05, 1.4952e+00, 1.5824e-02, + 2DIAGNOSTIC, 46, -6.977581139218e-01, 3.876514934859e-05, 1.5090e+00, 1.3781e-02, + 2DIAGNOSTIC, 47, -6.977952383037e-01, 2.717058060865e-05, 1.5235e+00, 1.4558e-02, + 2DIAGNOSTIC, 48, -6.977995242982e-01, 1.672867123623e-05, 1.5353e+00, 1.1719e-02, + 2DIAGNOSTIC, 49, -6.978049095663e-01, 8.898827443999e-06, 1.5506e+00, 1.5359e-02, + 2DIAGNOSTIC, 50, -6.978071745608e-01, 5.881281212875e-06, 1.5643e+00, 1.3635e-02, + 2DIAGNOSTIC, 51, -6.977665403169e-01, 2.871282676804e-06, 1.5759e+00, 1.1621e-02, + 2DIAGNOSTIC, 52, -6.977497492806e-01, 1.284137288522e-06, 1.5875e+00, 1.1597e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.858810992983e-01, 1.797693134862e+308, 2.0514e+00, 4.6392e-01, + 2DIAGNOSTIC, 2, -5.866613918589e-01, 1.797693134862e+308, 2.1325e+00, 8.1153e-02, + 2DIAGNOSTIC, 3, -5.868969654481e-01, 1.797693134862e+308, 2.2283e+00, 9.5771e-02, + 2DIAGNOSTIC, 4, -5.869976197052e-01, 1.797693134862e+308, 2.3110e+00, 8.2636e-02, + 2DIAGNOSTIC, 5, -5.870802142179e-01, 1.797693134862e+308, 2.3921e+00, 8.1146e-02, + 2DIAGNOSTIC, 6, -5.872226879718e-01, 1.797693134862e+308, 2.5094e+00, 1.1728e-01, + 2DIAGNOSTIC, 7, -5.872378472306e-01, 1.797693134862e+308, 2.5990e+00, 8.9572e-02, + 2DIAGNOSTIC, 8, -5.872480118066e-01, 1.797693134862e+308, 2.7091e+00, 1.1017e-01, + 2DIAGNOSTIC, 9, -5.872466188813e-01, 1.797693134862e+308, 2.8178e+00, 1.0873e-01, + 2DIAGNOSTIC, 10, -5.872479301045e-01, 1.126221194704e-04, 2.9114e+00, 9.3557e-02, + 2DIAGNOSTIC, 11, -5.872445794238e-01, 5.331089767503e-05, 3.0060e+00, 9.4582e-02, + 2DIAGNOSTIC, 12, -5.872408070742e-01, 3.049907593716e-05, 3.1047e+00, 9.8679e-02, + 2DIAGNOSTIC, 13, -5.872389770678e-01, 1.739993669188e-05, 3.1994e+00, 9.4720e-02, + 2DIAGNOSTIC, 14, -5.872350148405e-01, 8.142094190700e-06, 3.2915e+00, 9.2152e-02, + 2DIAGNOSTIC, 15, -5.872331734195e-01, 2.069679520628e-06, 3.3716e+00, 8.0025e-02, + Elapsed time (stage 0): 3.4956e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.252812699831e-01, 1.797693134862e+308, 2.0489e-01, 2.0489e-01, + 2DIAGNOSTIC, 2, -9.277664793326e-01, 1.797693134862e+308, 2.0635e-01, 1.4598e-03, + 2DIAGNOSTIC, 3, -9.303699213784e-01, 1.797693134862e+308, 2.0757e-01, 1.2219e-03, + 2DIAGNOSTIC, 4, -9.350259450073e-01, 1.797693134862e+308, 2.0877e-01, 1.1971e-03, + 2DIAGNOSTIC, 5, -9.428571730181e-01, 1.797693134862e+308, 2.1000e-01, 1.2281e-03, + 2DIAGNOSTIC, 6, -9.529260365206e-01, 1.797693134862e+308, 2.1121e-01, 1.2121e-03, + 2DIAGNOSTIC, 7, -9.699586523972e-01, 1.797693134862e+308, 2.1271e-01, 1.4961e-03, + 2DIAGNOSTIC, 8, -9.729236978778e-01, 1.797693134862e+308, 2.1417e-01, 1.4601e-03, + 2DIAGNOSTIC, 9, -9.759160973501e-01, 1.797693134862e+308, 2.1586e-01, 1.6959e-03, + 2DIAGNOSTIC, 10, -9.773798889598e-01, 4.247066398046e-03, 2.1760e-01, 1.7340e-03, + 2DIAGNOSTIC, 11, -9.770660952755e-01, 3.686571304988e-03, 2.2001e-01, 2.4149e-03, + 2DIAGNOSTIC, 12, -9.777724815860e-01, 2.967184186024e-03, 2.2188e-01, 1.8661e-03, + 2DIAGNOSTIC, 13, -9.780515742296e-01, 2.159454904860e-03, 2.2361e-01, 1.7359e-03, + 2DIAGNOSTIC, 14, -9.776614877650e-01, 1.366395271689e-03, 2.2510e-01, 1.4882e-03, + 2DIAGNOSTIC, 15, -9.772700649390e-01, 7.026727132860e-04, 2.2682e-01, 1.7169e-03, + 2DIAGNOSTIC, 16, -9.781324901463e-01, 2.538874926947e-04, 2.2860e-01, 1.7838e-03, + 2DIAGNOSTIC, 17, -9.769286480869e-01, 1.094434473975e-04, 2.3033e-01, 1.7312e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.304545413300e-01, 1.797693134862e+308, 4.3621e-01, 2.0588e-01, + 2DIAGNOSTIC, 2, -8.303051254651e-01, 1.797693134862e+308, 4.3820e-01, 1.9901e-03, + 2DIAGNOSTIC, 3, -8.324684985260e-01, 1.797693134862e+308, 4.4002e-01, 1.8139e-03, + 2DIAGNOSTIC, 4, -8.340568502952e-01, 1.797693134862e+308, 4.4208e-01, 2.0649e-03, + 2DIAGNOSTIC, 5, -8.350897726313e-01, 1.797693134862e+308, 4.4417e-01, 2.0919e-03, + 2DIAGNOSTIC, 6, -8.358333413425e-01, 1.797693134862e+308, 4.4605e-01, 1.8730e-03, + 2DIAGNOSTIC, 7, -8.364023155536e-01, 1.797693134862e+308, 4.4849e-01, 2.4390e-03, + 2DIAGNOSTIC, 8, -8.357470792239e-01, 1.797693134862e+308, 4.5067e-01, 2.1839e-03, + 2DIAGNOSTIC, 9, -8.361864031401e-01, 1.797693134862e+308, 4.5383e-01, 3.1581e-03, + 2DIAGNOSTIC, 10, -8.361354750274e-01, 4.916504246715e-04, 4.5634e-01, 2.5070e-03, + 2DIAGNOSTIC, 11, -8.362213602879e-01, 3.439829776859e-04, 4.5880e-01, 2.4672e-03, + 2DIAGNOSTIC, 12, -8.362555982844e-01, 1.862233130897e-04, 4.6133e-01, 2.5241e-03, + 2DIAGNOSTIC, 13, -8.362783843205e-01, 9.308511303865e-05, 4.6349e-01, 2.1620e-03, + 2DIAGNOSTIC, 14, -8.361031060289e-01, 3.904281965297e-05, 4.6564e-01, 2.1539e-03, + 2DIAGNOSTIC, 15, -8.359507391443e-01, 8.380186135012e-06, 4.6780e-01, 2.1560e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.104077938631e-01, 1.797693134862e+308, 6.9479e-01, 2.2699e-01, + 2DIAGNOSTIC, 2, -7.123088888850e-01, 1.797693134862e+308, 7.0649e-01, 1.1701e-02, + 2DIAGNOSTIC, 3, -7.142422720544e-01, 1.797693134862e+308, 7.1882e-01, 1.2327e-02, + 2DIAGNOSTIC, 4, -7.159658054476e-01, 1.797693134862e+308, 7.3148e-01, 1.2664e-02, + 2DIAGNOSTIC, 5, -7.174390961482e-01, 1.797693134862e+308, 7.4443e-01, 1.2950e-02, + 2DIAGNOSTIC, 6, -7.185696400591e-01, 1.797693134862e+308, 7.5662e-01, 1.2185e-02, + 2DIAGNOSTIC, 7, -7.195864446345e-01, 1.797693134862e+308, 7.7462e-01, 1.7999e-02, + 2DIAGNOSTIC, 8, -7.198355567570e-01, 1.797693134862e+308, 7.8709e-01, 1.2477e-02, + 2DIAGNOSTIC, 9, -7.200190660282e-01, 1.797693134862e+308, 8.0104e-01, 1.3949e-02, + 2DIAGNOSTIC, 10, -7.202988601931e-01, 8.924807662025e-04, 8.1663e-01, 1.5585e-02, + 2DIAGNOSTIC, 11, -7.202539094373e-01, 6.286299313712e-04, 8.3317e-01, 1.6538e-02, + 2DIAGNOSTIC, 12, -7.209512506756e-01, 4.377504528142e-04, 8.4771e-01, 1.4548e-02, + 2DIAGNOSTIC, 13, -7.210040672988e-01, 2.964409343786e-04, 8.6019e-01, 1.2479e-02, + 2DIAGNOSTIC, 14, -7.209642442010e-01, 1.960062316317e-04, 8.7440e-01, 1.4206e-02, + 2DIAGNOSTIC, 15, -7.209598043682e-01, 1.298687946431e-04, 8.8677e-01, 1.2371e-02, + 2DIAGNOSTIC, 16, -7.209651828484e-01, 8.777310137216e-05, 9.0123e-01, 1.4459e-02, + 2DIAGNOSTIC, 17, -7.210227092552e-01, 6.744577222910e-05, 9.1562e-01, 1.4396e-02, + 2DIAGNOSTIC, 18, -7.210684416124e-01, 4.963832580495e-05, 9.2844e-01, 1.2811e-02, + 2DIAGNOSTIC, 19, -7.210817959270e-01, 3.343101892631e-05, 9.4099e-01, 1.2554e-02, + 2DIAGNOSTIC, 20, -7.211286649615e-01, 2.259101456335e-05, 9.5496e-01, 1.3966e-02, + 2DIAGNOSTIC, 21, -7.213110767846e-01, 1.302758481511e-05, 9.6763e-01, 1.2676e-02, + 2DIAGNOSTIC, 22, -7.218001864517e-01, 2.443699470871e-05, 9.8417e-01, 1.6543e-02, + 2DIAGNOSTIC, 23, -7.218170093955e-01, 3.370977658939e-05, 1.0044e+00, 2.0197e-02, + 2DIAGNOSTIC, 24, -7.218102839592e-01, 3.855867689337e-05, 1.0189e+00, 1.4503e-02, + 2DIAGNOSTIC, 25, -7.218105205208e-01, 3.958493752523e-05, 1.0324e+00, 1.3552e-02, + 2DIAGNOSTIC, 26, -7.218106075254e-01, 3.692450680551e-05, 1.0442e+00, 1.1791e-02, + 2DIAGNOSTIC, 27, -7.218108017134e-01, 3.180515809304e-05, 1.0567e+00, 1.2480e-02, + 2DIAGNOSTIC, 28, -7.218111817724e-01, 2.482966459093e-05, 1.0691e+00, 1.2389e-02, + 2DIAGNOSTIC, 29, -7.218337579267e-01, 1.670947785962e-05, 1.0826e+00, 1.3558e-02, + 2DIAGNOSTIC, 30, -7.218563407357e-01, 8.574570769145e-06, 1.0968e+00, 1.4175e-02, + 2DIAGNOSTIC, 31, -7.217903341146e-01, 1.555209007291e-06, 1.1104e+00, 1.3615e-02, + 2DIAGNOSTIC, 32, -7.218345566609e-01, 1.529098019266e-06, 1.1529e+00, 4.2504e-02, + 2DIAGNOSTIC, 33, -7.218345566603e-01, 1.636314608075e-06, 1.1664e+00, 1.3450e-02, + 2DIAGNOSTIC, 34, -7.218345566603e-01, 1.583775221269e-06, 1.1800e+00, 1.3637e-02, + 2DIAGNOSTIC, 35, -7.218345566603e-01, 1.481289335088e-06, 1.1934e+00, 1.3395e-02, + 2DIAGNOSTIC, 36, -7.218345566603e-01, 1.344703357799e-06, 1.2069e+00, 1.3434e-02, + 2DIAGNOSTIC, 37, -7.218345566603e-01, 1.175309442346e-06, 1.2204e+00, 1.3500e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.055811324623e-01, 1.797693134862e+308, 1.6396e+00, 4.1921e-01, + 2DIAGNOSTIC, 2, -6.061035386368e-01, 1.797693134862e+308, 1.7285e+00, 8.8898e-02, + 2DIAGNOSTIC, 3, -6.062773805827e-01, 1.797693134862e+308, 1.8225e+00, 9.4052e-02, + 2DIAGNOSTIC, 4, -6.063439326411e-01, 1.797693134862e+308, 1.9307e+00, 1.0822e-01, + 2DIAGNOSTIC, 5, -6.064194742876e-01, 1.797693134862e+308, 2.0344e+00, 1.0365e-01, + 2DIAGNOSTIC, 6, -6.064454003519e-01, 1.797693134862e+308, 2.1333e+00, 9.8936e-02, + 2DIAGNOSTIC, 7, -6.064260211282e-01, 1.797693134862e+308, 2.2204e+00, 8.7064e-02, + 2DIAGNOSTIC, 8, -6.064274053187e-01, 1.797693134862e+308, 2.3147e+00, 9.4277e-02, + 2DIAGNOSTIC, 9, -6.064440134111e-01, 1.797693134862e+308, 2.3946e+00, 7.9900e-02, + 2DIAGNOSTIC, 10, -6.064588116823e-01, 6.520164194662e-05, 2.4993e+00, 1.0473e-01, + 2DIAGNOSTIC, 11, -6.064494851949e-01, 2.740468574554e-05, 2.6342e+00, 1.3490e-01, + 2DIAGNOSTIC, 12, -6.064505123656e-01, 1.407869541886e-05, 2.7376e+00, 1.0344e-01, + 2DIAGNOSTIC, 13, -6.064437572837e-01, 7.778541396122e-06, 2.8400e+00, 1.0239e-01, + 2DIAGNOSTIC, 14, -6.064369516988e-01, 3.812457675306e-06, 2.9709e+00, 1.3087e-01, + 2DIAGNOSTIC, 15, -6.064313179949e-01, 2.384795589436e-06, 3.0725e+00, 1.0164e-01, + 2DIAGNOSTIC, 16, -6.064301503594e-01, 1.863396747487e-06, 3.1733e+00, 1.0081e-01, + Elapsed time (stage 1): 3.2873e+00 + + +Total elapsed time: 6.7864e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:49:37 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:49:38 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55e5f8bcd4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 63.4059, -114.851] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e5f8bd2fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f6e94894010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55e5f8bce850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 63.4059, -114.851] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e5f8bcbf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f6e911d5010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55e5f8be5b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 63.4059, -114.851] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e5f8bd2550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f6e8db16010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55e5f8bead70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 63.4059, -114.851] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e5f8be8c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f6e8a457010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55e5f8becf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 63.4059, -114.851] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e5f8beb3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f6e86d98010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55e5f8bed540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 63.4059, -114.851] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e5f8bed4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f6e836d9010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.556692590261e-01, 1.797693134862e+308, 2.1556e-01, 2.1556e-01, + 2DIAGNOSTIC, 2, -6.578027232236e-01, 1.797693134862e+308, 2.1755e-01, 1.9870e-03, + 2DIAGNOSTIC, 3, -6.601511947586e-01, 1.797693134862e+308, 2.1952e-01, 1.9722e-03, + 2DIAGNOSTIC, 4, -6.619603764428e-01, 1.797693134862e+308, 2.2142e-01, 1.9000e-03, + 2DIAGNOSTIC, 5, -6.627644878285e-01, 1.797693134862e+308, 2.2344e-01, 2.0130e-03, + 2DIAGNOSTIC, 6, -6.630847724563e-01, 1.797693134862e+308, 2.2550e-01, 2.0671e-03, + 2DIAGNOSTIC, 7, -6.630739876177e-01, 1.797693134862e+308, 2.2816e-01, 2.6581e-03, + 2DIAGNOSTIC, 8, -6.631657129779e-01, 1.797693134862e+308, 2.3021e-01, 2.0530e-03, + 2DIAGNOSTIC, 9, -6.632561066568e-01, 1.797693134862e+308, 2.3311e-01, 2.8999e-03, + 2DIAGNOSTIC, 10, -6.633584451821e-01, 6.538488048654e-04, 2.3526e-01, 2.1460e-03, + 2DIAGNOSTIC, 11, -6.633895978891e-01, 3.732664152400e-04, 2.3733e-01, 2.0700e-03, + 2DIAGNOSTIC, 12, -6.634411707756e-01, 1.834187742987e-04, 2.3970e-01, 2.3699e-03, + 2DIAGNOSTIC, 13, -6.638177822144e-01, 9.527111712197e-05, 2.4256e-01, 2.8570e-03, + 2DIAGNOSTIC, 14, -6.638586331993e-01, 6.708958741167e-05, 2.4468e-01, 2.1219e-03, + 2DIAGNOSTIC, 15, -6.638612117273e-01, 5.967586705508e-05, 2.4677e-01, 2.0912e-03, + 2DIAGNOSTIC, 16, -6.638655234827e-01, 5.684421723207e-05, 2.4881e-01, 2.0361e-03, + 2DIAGNOSTIC, 17, -6.638719485175e-01, 4.914437919181e-05, 2.5111e-01, 2.3038e-03, + 2DIAGNOSTIC, 18, -6.638871106144e-01, 4.030117232334e-05, 2.5460e-01, 3.4881e-03, + 2DIAGNOSTIC, 19, -6.638872021894e-01, 3.077059336187e-05, 2.5675e-01, 2.1560e-03, + 2DIAGNOSTIC, 20, -6.638876024247e-01, 2.182258271775e-05, 2.5894e-01, 2.1908e-03, + 2DIAGNOSTIC, 21, -6.638885281109e-01, 1.257798356565e-05, 2.6111e-01, 2.1620e-03, + 2DIAGNOSTIC, 22, -6.638902213103e-01, 3.976935275367e-06, 2.6329e-01, 2.1820e-03, + 2DIAGNOSTIC, 23, -6.638926904404e-01, 2.930502930258e-06, 2.6593e-01, 2.6381e-03, + 2DIAGNOSTIC, 24, -6.638929799556e-01, 2.561393414202e-06, 2.6829e-01, 2.3608e-03, + 2DIAGNOSTIC, 25, -6.638937414733e-01, 2.167398221994e-06, 2.7067e-01, 2.3811e-03, + 2DIAGNOSTIC, 26, -6.638958955277e-01, 1.826363833661e-06, 2.7375e-01, 3.0849e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.583278662359e-01, 1.797693134862e+308, 4.9227e-01, 2.1851e-01, + 2DIAGNOSTIC, 2, -5.599227580786e-01, 1.797693134862e+308, 5.0606e-01, 1.3791e-02, + 2DIAGNOSTIC, 3, -5.608656303504e-01, 1.797693134862e+308, 5.1840e-01, 1.2342e-02, + 2DIAGNOSTIC, 4, -5.610522586439e-01, 1.797693134862e+308, 5.3147e-01, 1.3075e-02, + 2DIAGNOSTIC, 5, -5.609887846239e-01, 1.797693134862e+308, 5.4447e-01, 1.2998e-02, + 2DIAGNOSTIC, 6, -5.609903264562e-01, 1.797693134862e+308, 5.5777e-01, 1.3295e-02, + 2DIAGNOSTIC, 7, -5.609924368074e-01, 1.797693134862e+308, 5.7092e-01, 1.3150e-02, + 2DIAGNOSTIC, 8, -5.610093291960e-01, 1.797693134862e+308, 5.8239e-01, 1.1475e-02, + 2DIAGNOSTIC, 9, -5.610214310834e-01, 1.797693134862e+308, 5.9570e-01, 1.3308e-02, + 2DIAGNOSTIC, 10, -5.609864651333e-01, 1.903307376503e-04, 6.0748e-01, 1.1781e-02, + 2DIAGNOSTIC, 11, -5.610185563325e-01, 5.771713013422e-05, 6.2072e-01, 1.3240e-02, + 2DIAGNOSTIC, 12, -5.609962972280e-01, 7.590747581193e-06, 6.3333e-01, 1.2609e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.716059873708e-01, 1.797693134862e+308, 9.8520e-01, 3.5187e-01, + 2DIAGNOSTIC, 2, -4.719390551886e-01, 1.797693134862e+308, 1.0629e+00, 7.7672e-02, + 2DIAGNOSTIC, 3, -4.720381840477e-01, 1.797693134862e+308, 1.1403e+00, 7.7393e-02, + 2DIAGNOSTIC, 4, -4.721200314981e-01, 1.797693134862e+308, 1.2194e+00, 7.9157e-02, + 2DIAGNOSTIC, 5, -4.724106201633e-01, 1.797693134862e+308, 1.3533e+00, 1.3384e-01, + 2DIAGNOSTIC, 6, -4.725258989708e-01, 1.797693134862e+308, 1.4591e+00, 1.0581e-01, + 2DIAGNOSTIC, 7, -4.725435010416e-01, 1.797693134862e+308, 1.5778e+00, 1.1870e-01, + 2DIAGNOSTIC, 8, -4.725524823927e-01, 1.797693134862e+308, 1.7071e+00, 1.2936e-01, + 2DIAGNOSTIC, 9, -4.725537558131e-01, 1.797693134862e+308, 1.8366e+00, 1.2950e-01, + 2DIAGNOSTIC, 10, -4.725547647842e-01, 1.273650228391e-04, 1.9242e+00, 8.7596e-02, + 2DIAGNOSTIC, 11, -4.725518617522e-01, 8.154497789228e-05, 2.0139e+00, 8.9709e-02, + 2DIAGNOSTIC, 12, -4.725492911838e-01, 5.299768578124e-05, 2.1043e+00, 9.0370e-02, + 2DIAGNOSTIC, 13, -4.725473733533e-01, 2.893078489791e-05, 2.1911e+00, 8.6747e-02, + 2DIAGNOSTIC, 14, -4.725464903224e-01, 9.088043395056e-06, 2.2749e+00, 8.3798e-02, + 2DIAGNOSTIC, 15, -4.725444992743e-01, 2.725531703482e-06, 2.3747e+00, 9.9817e-02, + 2DIAGNOSTIC, 16, -4.725452348158e-01, 1.454229680703e-06, 2.4822e+00, 1.0755e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.132987648220e-01, 1.797693134862e+308, 3.8539e+00, 1.3717e+00, + 2DIAGNOSTIC, 2, -4.133660663499e-01, 1.797693134862e+308, 5.2015e+00, 1.3476e+00, + 2DIAGNOSTIC, 3, -4.133663047076e-01, 1.797693134862e+308, 5.7323e+00, 5.3073e-01, + 2DIAGNOSTIC, 4, -4.133662188383e-01, 1.797693134862e+308, 6.3542e+00, 6.2195e-01, + 2DIAGNOSTIC, 5, -4.133661593376e-01, 1.797693134862e+308, 6.9295e+00, 5.7527e-01, + 2DIAGNOSTIC, 6, -4.133658320404e-01, 1.797693134862e+308, 7.4546e+00, 5.2507e-01, + 2DIAGNOSTIC, 7, -4.133660082295e-01, 1.797693134862e+308, 8.0622e+00, 6.0766e-01, + 2DIAGNOSTIC, 8, -4.133656425658e-01, 1.797693134862e+308, 8.8193e+00, 7.5710e-01, + 2DIAGNOSTIC, 9, -4.133657208449e-01, 1.797693134862e+308, 9.4373e+00, 6.1801e-01, + 2DIAGNOSTIC, 10, -4.133657639565e-01, 7.724453758962e-06, 1.0037e+01, 5.9985e-01, + 2DIAGNOSTIC, 11, -4.133654775797e-01, 2.790413505052e-06, 1.0589e+01, 5.5158e-01, + 2DIAGNOSTIC, 12, -4.133654886444e-01, 2.544658046194e-06, 1.1143e+01, 5.5430e-01, + 2DIAGNOSTIC, 13, -4.133653554276e-01, 2.351785351143e-06, 1.1687e+01, 5.4425e-01, + 2DIAGNOSTIC, 14, -4.133655386080e-01, 2.199878314374e-06, 1.2236e+01, 5.4832e-01, + 2DIAGNOSTIC, 15, -4.133654405153e-01, 2.067552923618e-06, 1.2848e+01, 6.1232e-01, + 2DIAGNOSTIC, 16, -4.133656266450e-01, 1.950542800638e-06, 1.3459e+01, 6.1072e-01, + 2DIAGNOSTIC, 17, -4.133654966452e-01, 1.853033033239e-06, 1.4004e+01, 5.4511e-01, + 2DIAGNOSTIC, 18, -4.133653818206e-01, 1.749661773576e-06, 1.4546e+01, 5.4234e-01, + 2DIAGNOSTIC, 19, -4.133652932357e-01, 1.658355741445e-06, 1.5100e+01, 5.5341e-01, + 2DIAGNOSTIC, 20, -4.133650933035e-01, 1.572451701196e-06, 1.5650e+01, 5.5020e-01, + 2DIAGNOSTIC, 21, -4.133652165112e-01, 1.491119754879e-06, 1.6300e+01, 6.5041e-01, + 2DIAGNOSTIC, 22, -4.133650848150e-01, 1.415587972481e-06, 1.7051e+01, 7.5128e-01, + 2DIAGNOSTIC, 23, -4.133649737328e-01, 1.342199120229e-06, 1.7670e+01, 6.1810e-01, + 2DIAGNOSTIC, 24, -4.133648483060e-01, 1.280673905903e-06, 1.8221e+01, 5.5193e-01, + 2DIAGNOSTIC, 25, -4.133647412467e-01, 1.222481042867e-06, 1.8832e+01, 6.1044e-01, + 2DIAGNOSTIC, 26, -4.133647698262e-01, 1.179132710333e-06, 1.9445e+01, 6.1325e-01, + 2DIAGNOSTIC, 27, -4.133646386620e-01, 1.136443990676e-06, 1.9988e+01, 5.4246e-01, + 2DIAGNOSTIC, 28, -4.133645213275e-01, 1.095217623696e-06, 2.0602e+01, 6.1474e-01, + 2DIAGNOSTIC, 29, -4.133645554444e-01, 1.059644537296e-06, 2.1125e+01, 5.2237e-01, + 2DIAGNOSTIC, 30, -4.133644603064e-01, 1.022990063965e-06, 2.1673e+01, 5.4784e-01, + Elapsed time (stage 0): 2.2042e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.586814468583e-01, 1.797693134862e+308, 1.8517e-01, 1.8517e-01, + 2DIAGNOSTIC, 2, -6.599566624941e-01, 1.797693134862e+308, 1.8744e-01, 2.2759e-03, + 2DIAGNOSTIC, 3, -6.616983307385e-01, 1.797693134862e+308, 1.8964e-01, 2.1970e-03, + 2DIAGNOSTIC, 4, -6.632652114381e-01, 1.797693134862e+308, 1.9180e-01, 2.1622e-03, + 2DIAGNOSTIC, 5, -6.643340454401e-01, 1.797693134862e+308, 1.9400e-01, 2.1961e-03, + 2DIAGNOSTIC, 6, -6.654658501857e-01, 1.797693134862e+308, 1.9603e-01, 2.0308e-03, + 2DIAGNOSTIC, 7, -6.660364494178e-01, 1.797693134862e+308, 1.9839e-01, 2.3651e-03, + 2DIAGNOSTIC, 8, -6.680535701465e-01, 1.797693134862e+308, 2.0128e-01, 2.8858e-03, + 2DIAGNOSTIC, 9, -6.678730929603e-01, 1.797693134862e+308, 2.0325e-01, 1.9722e-03, + 2DIAGNOSTIC, 10, -6.684262983786e-01, 9.701333346585e-04, 2.0565e-01, 2.3940e-03, + 2DIAGNOSTIC, 11, -6.686406721161e-01, 7.657466864002e-04, 2.0956e-01, 3.9108e-03, + 2DIAGNOSTIC, 12, -6.686461437894e-01, 5.715100654471e-04, 2.1164e-01, 2.0881e-03, + 2DIAGNOSTIC, 13, -6.686857647857e-01, 4.132537061187e-04, 2.1377e-01, 2.1300e-03, + 2DIAGNOSTIC, 14, -6.687420280582e-01, 2.895522609391e-04, 2.1588e-01, 2.1091e-03, + 2DIAGNOSTIC, 15, -6.688121521876e-01, 1.885188080131e-04, 2.1803e-01, 2.1448e-03, + 2DIAGNOSTIC, 16, -6.688780922901e-01, 1.149877704186e-04, 2.2016e-01, 2.1291e-03, + 2DIAGNOSTIC, 17, -6.689250996698e-01, 5.393253418809e-05, 2.2228e-01, 2.1241e-03, + 2DIAGNOSTIC, 18, -6.689628769027e-01, 4.392878812821e-05, 2.2445e-01, 2.1660e-03, + 2DIAGNOSTIC, 19, -6.690404380437e-01, 2.845227309488e-05, 2.2692e-01, 2.4681e-03, + 2DIAGNOSTIC, 20, -6.694058265369e-01, 3.145069875757e-05, 2.2931e-01, 2.3980e-03, + 2DIAGNOSTIC, 21, -6.694776592320e-01, 3.700398335389e-05, 2.3318e-01, 3.8669e-03, + 2DIAGNOSTIC, 22, -6.694798384678e-01, 3.894653169371e-05, 2.3526e-01, 2.0752e-03, + 2DIAGNOSTIC, 23, -6.694884015077e-01, 3.821503761124e-05, 2.3742e-01, 2.1651e-03, + 2DIAGNOSTIC, 24, -6.695002414003e-01, 3.526076196916e-05, 2.3968e-01, 2.2562e-03, + 2DIAGNOSTIC, 25, -6.695120313611e-01, 3.062358697414e-05, 2.4195e-01, 2.2771e-03, + 2DIAGNOSTIC, 26, -6.695227302556e-01, 2.480266484609e-05, 2.4423e-01, 2.2781e-03, + 2DIAGNOSTIC, 27, -6.695372577231e-01, 1.825131325557e-05, 2.4652e-01, 2.2888e-03, + 2DIAGNOSTIC, 28, -6.695539992582e-01, 1.143519360448e-05, 2.4882e-01, 2.2981e-03, + 2DIAGNOSTIC, 29, -6.695638600173e-01, 5.255267426341e-06, 2.5242e-01, 3.6042e-03, + 2DIAGNOSTIC, 30, -6.695645049395e-01, 4.261353388282e-06, 2.5479e-01, 2.3670e-03, + 2DIAGNOSTIC, 31, -6.695655689748e-01, 4.034560610350e-06, 2.5709e-01, 2.3041e-03, + 2DIAGNOSTIC, 32, -6.695667759593e-01, 3.580644641392e-06, 2.5940e-01, 2.3098e-03, + 2DIAGNOSTIC, 33, -6.695681331008e-01, 3.031932093236e-06, 2.6170e-01, 2.2979e-03, + 2DIAGNOSTIC, 34, -6.695695785527e-01, 2.483163822981e-06, 2.6389e-01, 2.1899e-03, + 2DIAGNOSTIC, 35, -6.695707836275e-01, 1.978046228413e-06, 2.6716e-01, 3.2730e-03, + 2DIAGNOSTIC, 36, -6.695711704043e-01, 1.529767349368e-06, 2.6938e-01, 2.2130e-03, + 2DIAGNOSTIC, 37, -6.695713649039e-01, 1.209729663328e-06, 2.7237e-01, 2.9900e-03, + 2DIAGNOSTIC, 38, -6.695714689579e-01, 1.059005016339e-06, 2.7679e-01, 4.4219e-03, + 2DIAGNOSTIC, 39, -6.695714697090e-01, 1.002485405702e-06, 2.7913e-01, 2.3420e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.609359632231e-01, 1.797693134862e+308, 4.9542e-01, 2.1629e-01, + 2DIAGNOSTIC, 2, -5.619032435947e-01, 1.797693134862e+308, 5.1098e-01, 1.5555e-02, + 2DIAGNOSTIC, 3, -5.627220204120e-01, 1.797693134862e+308, 5.2558e-01, 1.4604e-02, + 2DIAGNOSTIC, 4, -5.632420167478e-01, 1.797693134862e+308, 5.4036e-01, 1.4775e-02, + 2DIAGNOSTIC, 5, -5.638646978892e-01, 1.797693134862e+308, 5.5849e-01, 1.8139e-02, + 2DIAGNOSTIC, 6, -5.643531310836e-01, 1.797693134862e+308, 5.7495e-01, 1.6451e-02, + 2DIAGNOSTIC, 7, -5.644964177021e-01, 1.797693134862e+308, 5.9103e-01, 1.6088e-02, + 2DIAGNOSTIC, 8, -5.645694024973e-01, 1.797693134862e+308, 6.0901e-01, 1.7978e-02, + 2DIAGNOSTIC, 9, -5.645926632650e-01, 1.797693134862e+308, 6.2378e-01, 1.4769e-02, + 2DIAGNOSTIC, 10, -5.647003282544e-01, 4.105421523284e-04, 6.3864e-01, 1.4864e-02, + 2DIAGNOSTIC, 11, -5.647254994903e-01, 2.711237351693e-04, 6.5735e-01, 1.8702e-02, + 2DIAGNOSTIC, 12, -5.647374852569e-01, 1.716310852361e-04, 6.7417e-01, 1.6824e-02, + 2DIAGNOSTIC, 13, -5.647607967152e-01, 1.048837284233e-04, 6.9012e-01, 1.5949e-02, + 2DIAGNOSTIC, 14, -5.648062183499e-01, 5.835003833822e-05, 7.0460e-01, 1.4481e-02, + 2DIAGNOSTIC, 15, -5.648574658460e-01, 3.508638982563e-05, 7.2126e-01, 1.6656e-02, + 2DIAGNOSTIC, 16, -5.648845409061e-01, 2.781396420652e-05, 7.3989e-01, 1.8636e-02, + 2DIAGNOSTIC, 17, -5.648921559265e-01, 2.349806279448e-05, 7.5421e-01, 1.4320e-02, + 2DIAGNOSTIC, 18, -5.649460534452e-01, 2.125466260770e-05, 7.7041e-01, 1.6195e-02, + 2DIAGNOSTIC, 19, -5.651442149632e-01, 2.318945010279e-05, 7.8713e-01, 1.6727e-02, + 2DIAGNOSTIC, 20, -5.651795423148e-01, 2.637604355338e-05, 8.0586e-01, 1.8724e-02, + 2DIAGNOSTIC, 21, -5.651927821253e-01, 2.792544975770e-05, 8.2052e-01, 1.4666e-02, + 2DIAGNOSTIC, 22, -5.652122547163e-01, 2.766981888751e-05, 8.3565e-01, 1.5125e-02, + 2DIAGNOSTIC, 23, -5.652206815567e-01, 2.563988562977e-05, 8.5481e-01, 1.9163e-02, + 2DIAGNOSTIC, 24, -5.652269106259e-01, 2.249546921192e-05, 8.7179e-01, 1.6976e-02, + 2DIAGNOSTIC, 25, -5.652293923926e-01, 1.867830240605e-05, 8.8657e-01, 1.4785e-02, + 2DIAGNOSTIC, 26, -5.652304468831e-01, 1.412848522044e-05, 9.0319e-01, 1.6620e-02, + 2DIAGNOSTIC, 27, -5.652316133223e-01, 8.885284302235e-06, 9.2404e-01, 2.0851e-02, + 2DIAGNOSTIC, 28, -5.652319711455e-01, 4.171292964122e-06, 9.3895e-01, 1.4902e-02, + 2DIAGNOSTIC, 29, -5.652330204373e-01, 2.943183629193e-06, 9.5415e-01, 1.5200e-02, + 2DIAGNOSTIC, 30, -5.652337249826e-01, 2.225855327755e-06, 9.6917e-01, 1.5020e-02, + 2DIAGNOSTIC, 31, -5.652342359048e-01, 1.661646029348e-06, 1.0178e+00, 4.8596e-02, + 2DIAGNOSTIC, 32, -5.652342359038e-01, 1.376752083178e-06, 1.0617e+00, 4.3905e-02, + 2DIAGNOSTIC, 33, -5.652342359038e-01, 1.199536456158e-06, 1.0802e+00, 1.8560e-02, + 2DIAGNOSTIC, 34, -5.652342359038e-01, 1.101927122039e-06, 1.0980e+00, 1.7772e-02, + 2DIAGNOSTIC, 35, -5.652342359038e-01, 1.029477291060e-06, 1.1153e+00, 1.7320e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.759364754194e-01, 1.797693134862e+308, 1.5352e+00, 4.1987e-01, + 2DIAGNOSTIC, 2, -4.762584248622e-01, 1.797693134862e+308, 1.6365e+00, 1.0127e-01, + 2DIAGNOSTIC, 3, -4.763936416666e-01, 1.797693134862e+308, 1.7390e+00, 1.0256e-01, + 2DIAGNOSTIC, 4, -4.764929639090e-01, 1.797693134862e+308, 1.8552e+00, 1.1617e-01, + 2DIAGNOSTIC, 5, -4.765496404370e-01, 1.797693134862e+308, 1.9952e+00, 1.3996e-01, + 2DIAGNOSTIC, 6, -4.765877109202e-01, 1.797693134862e+308, 2.0967e+00, 1.0156e-01, + 2DIAGNOSTIC, 7, -4.766134797861e-01, 1.797693134862e+308, 2.1953e+00, 9.8576e-02, + 2DIAGNOSTIC, 8, -4.766687719698e-01, 1.797693134862e+308, 2.3465e+00, 1.5121e-01, + 2DIAGNOSTIC, 9, -4.766827161023e-01, 1.797693134862e+308, 2.4615e+00, 1.1504e-01, + 2DIAGNOSTIC, 10, -4.767004123472e-01, 8.610992610576e-05, 2.5649e+00, 1.0334e-01, + 2DIAGNOSTIC, 11, -4.767048048005e-01, 5.209739336276e-05, 2.6671e+00, 1.0227e-01, + 2DIAGNOSTIC, 12, -4.767135713867e-01, 3.567051278472e-05, 2.8088e+00, 1.4164e-01, + 2DIAGNOSTIC, 13, -4.767187058679e-01, 2.511315109581e-05, 2.9236e+00, 1.1486e-01, + 2DIAGNOSTIC, 14, -4.767192193639e-01, 1.820661362222e-05, 3.0380e+00, 1.1434e-01, + 2DIAGNOSTIC, 15, -4.767183308537e-01, 1.298241330651e-05, 3.1384e+00, 1.0038e-01, + 2DIAGNOSTIC, 16, -4.767189508783e-01, 8.861178257019e-06, 3.2384e+00, 1.0006e-01, + 2DIAGNOSTIC, 17, -4.767195388969e-01, 5.470088703503e-06, 3.3396e+00, 1.0119e-01, + 2DIAGNOSTIC, 18, -4.767204833294e-01, 3.977975308843e-06, 3.4524e+00, 1.1275e-01, + 2DIAGNOSTIC, 19, -4.767235204713e-01, 2.960258745653e-06, 3.5838e+00, 1.3141e-01, + 2DIAGNOSTIC, 20, -4.767236215484e-01, 2.455772998469e-06, 3.6851e+00, 1.0138e-01, + 2DIAGNOSTIC, 21, -4.767236365316e-01, 2.039915167902e-06, 3.7769e+00, 9.1773e-02, + 2DIAGNOSTIC, 22, -4.767236528347e-01, 1.847651258109e-06, 3.8759e+00, 9.8969e-02, + 2DIAGNOSTIC, 23, -4.767236877431e-01, 1.767446907372e-06, 4.0731e+00, 1.9722e-01, + 2DIAGNOSTIC, 24, -4.767236912513e-01, 1.670440829327e-06, 4.1730e+00, 9.9880e-02, + 2DIAGNOSTIC, 25, -4.767236970058e-01, 1.527580919501e-06, 4.2733e+00, 1.0028e-01, + 2DIAGNOSTIC, 26, -4.767237054266e-01, 1.387153668868e-06, 4.3740e+00, 1.0076e-01, + 2DIAGNOSTIC, 27, -4.767237173663e-01, 1.255218184976e-06, 4.4737e+00, 9.9648e-02, + 2DIAGNOSTIC, 28, -4.767237322727e-01, 1.144048338571e-06, 4.5751e+00, 1.0146e-01, + 2DIAGNOSTIC, 29, -4.767237538110e-01, 1.102645201506e-06, 4.6747e+00, 9.9536e-02, + 2DIAGNOSTIC, 30, -4.767237673327e-01, 1.065753801391e-06, 4.8162e+00, 1.4151e-01, + 2DIAGNOSTIC, 31, -4.767237682055e-01, 1.031049857429e-06, 5.1662e+00, 3.5001e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.140379033524e-01, 1.797693134862e+308, 6.5148e+00, 1.3486e+00, + 2DIAGNOSTIC, 2, -4.140952912063e-01, 1.797693134862e+308, 7.1153e+00, 6.0044e-01, + 2DIAGNOSTIC, 3, -4.141513586000e-01, 1.797693134862e+308, 7.8650e+00, 7.4974e-01, + 2DIAGNOSTIC, 4, -4.141867422776e-01, 1.797693134862e+308, 8.5442e+00, 6.7920e-01, + 2DIAGNOSTIC, 5, -4.142217083567e-01, 1.797693134862e+308, 9.1496e+00, 6.0536e-01, + 2DIAGNOSTIC, 6, -4.142323428007e-01, 1.797693134862e+308, 9.8363e+00, 6.8678e-01, + 2DIAGNOSTIC, 7, -4.142339555992e-01, 1.797693134862e+308, 1.0385e+01, 5.4842e-01, + 2DIAGNOSTIC, 8, -4.142416078663e-01, 1.797693134862e+308, 1.0938e+01, 5.5276e-01, + 2DIAGNOSTIC, 9, -4.142640905519e-01, 1.797693134862e+308, 1.2679e+01, 1.7417e+00, + 2DIAGNOSTIC, 10, -4.142640905471e-01, 3.480097221546e-05, 1.4499e+01, 1.8197e+00, + 2DIAGNOSTIC, 11, -4.142640905471e-01, 2.354871276133e-05, 1.5099e+01, 6.0058e-01, + 2DIAGNOSTIC, 12, -4.142640905471e-01, 1.558193854916e-05, 1.5727e+01, 6.2717e-01, + 2DIAGNOSTIC, 13, -4.142640905471e-01, 1.059899914788e-05, 1.6322e+01, 5.9510e-01, + 2DIAGNOSTIC, 14, -4.142640905471e-01, 7.260190764913e-06, 1.6948e+01, 6.2579e-01, + 2DIAGNOSTIC, 15, -4.142640905471e-01, 5.499477628720e-06, 1.7747e+01, 7.9919e-01, + 2DIAGNOSTIC, 16, -4.142640905471e-01, 4.122799101322e-06, 1.8411e+01, 6.6435e-01, + 2DIAGNOSTIC, 17, -4.142640905471e-01, 2.778775905397e-06, 1.9035e+01, 6.2390e-01, + 2DIAGNOSTIC, 18, -4.142640905471e-01, 1.767386469828e-06, 1.9805e+01, 7.7016e-01, + 2DIAGNOSTIC, 19, -4.142640905471e-01, 1.674357889593e-06, 2.0484e+01, 6.7849e-01, + 2DIAGNOSTIC, 20, -4.142640905471e-01, 1.590632802119e-06, 2.1190e+01, 7.0612e-01, + 2DIAGNOSTIC, 21, -4.142640905471e-01, 1.514882185007e-06, 2.1879e+01, 6.8899e-01, + 2DIAGNOSTIC, 22, -4.142640905471e-01, 1.446018525475e-06, 2.2477e+01, 5.9873e-01, + 2DIAGNOSTIC, 23, -4.142640905471e-01, 1.383143457614e-06, 2.3100e+01, 6.2290e-01, + 2DIAGNOSTIC, 24, -4.142640905471e-01, 1.325508353897e-06, 2.3708e+01, 6.0749e-01, + 2DIAGNOSTIC, 25, -4.142640905471e-01, 1.272484375384e-06, 2.4465e+01, 7.5704e-01, + 2DIAGNOSTIC, 26, -4.142640905471e-01, 1.223539433971e-06, 2.5144e+01, 6.7952e-01, + 2DIAGNOSTIC, 27, -4.142640905471e-01, 1.178220274574e-06, 2.5818e+01, 6.7393e-01, + 2DIAGNOSTIC, 28, -4.142640905471e-01, 1.136138396599e-06, 2.6483e+01, 6.6500e-01, + 2DIAGNOSTIC, 29, -4.142640905471e-01, 1.096958889106e-06, 2.7199e+01, 7.1613e-01, + 2DIAGNOSTIC, 30, -4.142640905471e-01, 1.060391498373e-06, 2.7875e+01, 6.7510e-01, + 2DIAGNOSTIC, 31, -4.142640905471e-01, 1.026183424936e-06, 2.8531e+01, 6.5615e-01, + Elapsed time (stage 1): 2.8920e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.265448502809e-01, 1.797693134862e+308, 2.5434e-01, 2.5434e-01, + 1DIAGNOSTIC, 2, -9.358216897454e-01, 1.797693134862e+308, 3.4808e-01, 9.3749e-02, + 1DIAGNOSTIC, 3, -9.430916260402e-01, 1.797693134862e+308, 4.4336e-01, 9.5274e-02, + 1DIAGNOSTIC, 4, -9.486009085082e-01, 1.797693134862e+308, 5.3974e-01, 9.6376e-02, + 1DIAGNOSTIC, 5, -9.532027747979e-01, 1.797693134862e+308, 6.3367e-01, 9.3938e-02, + 1DIAGNOSTIC, 6, -9.570335534486e-01, 1.797693134862e+308, 7.3262e-01, 9.8944e-02, + 1DIAGNOSTIC, 7, -9.600571595134e-01, 1.797693134862e+308, 8.2899e-01, 9.6378e-02, + 1DIAGNOSTIC, 8, -9.624709180595e-01, 1.797693134862e+308, 9.2835e-01, 9.9353e-02, + 1DIAGNOSTIC, 9, -9.625138907481e-01, 1.797693134862e+308, 1.0243e+00, 9.5955e-02, + 1DIAGNOSTIC, 10, -9.632904436453e-01, 2.382956693997e-03, 1.1253e+00, 1.0095e-01, + 1DIAGNOSTIC, 11, -9.628742962278e-01, 1.611582361386e-03, 1.2278e+00, 1.0259e-01, + 1DIAGNOSTIC, 12, -9.637202777182e-01, 1.074441795274e-03, 1.3265e+00, 9.8678e-02, + 1DIAGNOSTIC, 13, -9.631757774974e-01, 6.757332830277e-04, 1.4278e+00, 1.0126e-01, + 1DIAGNOSTIC, 14, -9.640403446883e-01, 4.082461952329e-04, 1.5257e+00, 9.7895e-02, + 1DIAGNOSTIC, 15, -9.635489719124e-01, 2.199866594653e-04, 1.6247e+00, 9.9050e-02, + 1DIAGNOSTIC, 16, -9.643839771755e-01, 1.214321316270e-04, 1.7539e+00, 1.2916e-01, + 1DIAGNOSTIC, 17, -9.638010379243e-01, 6.480657211562e-05, 1.8505e+00, 9.6641e-02, + 1DIAGNOSTIC, 18, -9.646082101327e-01, 6.223593666124e-05, 1.9550e+00, 1.0447e-01, + 1DIAGNOSTIC, 19, -9.639635576316e-01, 4.430240577968e-05, 2.0492e+00, 9.4213e-02, + 1DIAGNOSTIC, 20, -9.647402131391e-01, 4.776549499180e-05, 2.1495e+00, 1.0028e-01, + 1DIAGNOSTIC, 21, -9.641168143415e-01, 3.129593227270e-05, 2.2504e+00, 1.0092e-01, + 1DIAGNOSTIC, 22, -9.648641329879e-01, 3.555128834818e-05, 2.3602e+00, 1.0980e-01, + 1DIAGNOSTIC, 23, -9.642218488080e-01, 2.040035358589e-05, 2.4792e+00, 1.1900e-01, + 1DIAGNOSTIC, 24, -9.649587897754e-01, 2.497296271230e-05, 2.5829e+00, 1.0365e-01, + 1DIAGNOSTIC, 25, -9.643154234251e-01, 1.300004815034e-05, 2.6826e+00, 9.9751e-02, + 1DIAGNOSTIC, 26, -9.650306551989e-01, 1.894502797735e-05, 2.7856e+00, 1.0300e-01, + 1DIAGNOSTIC, 27, -9.643854473005e-01, 8.840636190409e-06, 2.8839e+00, 9.8269e-02, + 1DIAGNOSTIC, 28, -9.651604053436e-01, 1.589269047683e-05, 2.9898e+00, 1.0589e-01, + 1DIAGNOSTIC, 29, -9.644430289784e-01, 6.711853572858e-06, 3.0857e+00, 9.5972e-02, + 1DIAGNOSTIC, 30, -9.652684760025e-01, 1.383245846790e-05, 3.1820e+00, 9.6273e-02, + 1DIAGNOSTIC, 31, -9.646363041150e-01, 6.873964536400e-06, 3.2770e+00, 9.5028e-02, + 1DIAGNOSTIC, 32, -9.654437080102e-01, 1.453358664521e-05, 3.3729e+00, 9.5900e-02, + 1DIAGNOSTIC, 33, -9.647275109153e-01, 7.881070487506e-06, 3.4700e+00, 9.7100e-02, + 1DIAGNOSTIC, 34, -9.654617745349e-01, 1.413834503947e-05, 3.5747e+00, 1.0465e-01, + 1DIAGNOSTIC, 35, -9.647458518533e-01, 6.947039641051e-06, 3.6760e+00, 1.0133e-01, + 1DIAGNOSTIC, 36, -9.654723199137e-01, 1.174387102825e-05, 3.7830e+00, 1.0694e-01, + 1DIAGNOSTIC, 37, -9.647586772124e-01, 4.038393893589e-06, 3.8862e+00, 1.0320e-01, + 1DIAGNOSTIC, 38, -9.654787107924e-01, 8.414631685140e-06, 3.9854e+00, 9.9283e-02, + 1DIAGNOSTIC, 39, -9.647672838943e-01, 6.886435535494e-07, 4.0866e+00, 1.0116e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.280016051172e-01, 1.797693134862e+308, 4.9446e+00, 8.5802e-01, + 1DIAGNOSTIC, 2, -9.317790531517e-01, 1.797693134862e+308, 5.6100e+00, 6.6536e-01, + 1DIAGNOSTIC, 3, -9.360829965694e-01, 1.797693134862e+308, 6.2496e+00, 6.3966e-01, + 1DIAGNOSTIC, 4, -9.393286043052e-01, 1.797693134862e+308, 6.8846e+00, 6.3500e-01, + 1DIAGNOSTIC, 5, -9.418988842525e-01, 1.797693134862e+308, 7.5165e+00, 6.3184e-01, + 1DIAGNOSTIC, 6, -9.439321248255e-01, 1.797693134862e+308, 8.1770e+00, 6.6047e-01, + 1DIAGNOSTIC, 7, -9.456177948153e-01, 1.797693134862e+308, 8.8384e+00, 6.6145e-01, + 1DIAGNOSTIC, 8, -9.470491990275e-01, 1.797693134862e+308, 9.5028e+00, 6.6436e-01, + 1DIAGNOSTIC, 9, -9.483007867523e-01, 1.797693134862e+308, 1.0157e+01, 6.5451e-01, + 1DIAGNOSTIC, 10, -9.494052940873e-01, 1.416733646086e-03, 1.0821e+01, 6.6376e-01, + 1DIAGNOSTIC, 11, -9.502929772642e-01, 1.076321459434e-03, 1.1495e+01, 6.7349e-01, + 1DIAGNOSTIC, 12, -9.512371843382e-01, 8.135922760760e-04, 1.2158e+01, 6.6335e-01, + 1DIAGNOSTIC, 13, -9.519501190388e-01, 6.332279186282e-04, 1.2812e+01, 6.5442e-01, + 1DIAGNOSTIC, 14, -9.527117256180e-01, 5.067224194270e-04, 1.3453e+01, 6.4090e-01, + 1DIAGNOSTIC, 15, -9.533698897079e-01, 4.151515188174e-04, 1.4125e+01, 6.7180e-01, + 1DIAGNOSTIC, 16, -9.541036342012e-01, 3.486615433478e-04, 1.4790e+01, 6.6521e-01, + 1DIAGNOSTIC, 17, -9.547255473700e-01, 2.984024535374e-04, 1.5459e+01, 6.6857e-01, + 1DIAGNOSTIC, 18, -9.552904243041e-01, 2.592834982454e-04, 1.6125e+01, 6.6650e-01, + 1DIAGNOSTIC, 19, -9.558256442065e-01, 2.283692137891e-04, 1.6774e+01, 6.4830e-01, + 1DIAGNOSTIC, 20, -9.563245727929e-01, 2.033034252127e-04, 1.7419e+01, 6.4532e-01, + 1DIAGNOSTIC, 21, -9.567754939569e-01, 1.806628963734e-04, 1.8066e+01, 6.4719e-01, + 1DIAGNOSTIC, 22, -9.571844276942e-01, 1.616210717238e-04, 1.8709e+01, 6.4332e-01, + 1DIAGNOSTIC, 23, -9.576638084914e-01, 1.446171345049e-04, 1.9346e+01, 6.3659e-01, + 1DIAGNOSTIC, 24, -9.579941704768e-01, 1.290675985586e-04, 1.9999e+01, 6.5274e-01, + 1DIAGNOSTIC, 25, -9.583142431579e-01, 1.143344636075e-04, 2.0645e+01, 6.4577e-01, + 1DIAGNOSTIC, 26, -9.586208543324e-01, 1.019656385844e-04, 2.1301e+01, 6.5615e-01, + 1DIAGNOSTIC, 27, -9.589146295926e-01, 9.105259333975e-05, 2.1949e+01, 6.4814e-01, + 1DIAGNOSTIC, 28, -9.591953091546e-01, 8.135044428469e-05, 2.2582e+01, 6.3348e-01, + 1DIAGNOSTIC, 29, -9.594647741615e-01, 7.293929048469e-05, 2.3222e+01, 6.3993e-01, + 1DIAGNOSTIC, 30, -9.597191899094e-01, 6.573271639667e-05, 2.3875e+01, 6.5303e-01, + 1DIAGNOSTIC, 31, -9.599552373067e-01, 5.942367668266e-05, 2.4536e+01, 6.6028e-01, + 1DIAGNOSTIC, 32, -9.601782129228e-01, 5.377583871870e-05, 2.5206e+01, 6.7074e-01, + 1DIAGNOSTIC, 33, -9.603827835638e-01, 4.959504052712e-05, 2.5862e+01, 6.5615e-01, + 1DIAGNOSTIC, 34, -9.605615814290e-01, 4.545957242661e-05, 2.6526e+01, 6.6318e-01, + 1DIAGNOSTIC, 35, -9.607341437463e-01, 4.148361115720e-05, 2.7200e+01, 6.7410e-01, + 1DIAGNOSTIC, 36, -9.608699682190e-01, 3.749138393786e-05, 2.7873e+01, 6.7327e-01, + 1DIAGNOSTIC, 37, -9.610108375783e-01, 3.369805834182e-05, 2.8539e+01, 6.6580e-01, + 1DIAGNOSTIC, 38, -9.610875428098e-01, 2.974243885853e-05, 2.9205e+01, 6.6589e-01, + 1DIAGNOSTIC, 39, -9.612151757143e-01, 2.624631885514e-05, 2.9874e+01, 6.6929e-01, + 1DIAGNOSTIC, 40, -9.611713443957e-01, 2.203232471761e-05, 3.0541e+01, 6.6720e-01, + 1DIAGNOSTIC, 41, -9.609554288766e-01, 1.614316632339e-05, 3.1207e+01, 6.6566e-01, + 1DIAGNOSTIC, 42, -9.608876323403e-01, 1.019692130405e-05, 3.1870e+01, 6.6338e-01, + 1DIAGNOSTIC, 43, -9.607327917133e-01, 3.941441839503e-06, 3.2530e+01, 6.5965e-01, + 1DIAGNOSTIC, 44, -9.607238188524e-01, -1.205167799292e-06, 3.3198e+01, 6.6774e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.158861817291e-01, 1.797693134862e+308, 3.8782e+01, 5.5848e+00, + 1DIAGNOSTIC, 2, -9.186884783948e-01, 1.797693134862e+308, 4.4123e+01, 5.3409e+00, + 1DIAGNOSTIC, 3, -9.210704634163e-01, 1.797693134862e+308, 4.9534e+01, 5.4109e+00, + 1DIAGNOSTIC, 4, -9.231753427061e-01, 1.797693134862e+308, 5.4896e+01, 5.3620e+00, + 1DIAGNOSTIC, 5, -9.249969430471e-01, 1.797693134862e+308, 6.0224e+01, 5.3275e+00, + 1DIAGNOSTIC, 6, -9.265086405863e-01, 1.797693134862e+308, 6.5559e+01, 5.3350e+00, + 1DIAGNOSTIC, 7, -9.278767059758e-01, 1.797693134862e+308, 7.0927e+01, 5.3680e+00, + 1DIAGNOSTIC, 8, -9.291447792852e-01, 1.797693134862e+308, 7.6253e+01, 5.3264e+00, + 1DIAGNOSTIC, 9, -9.303484033877e-01, 1.797693134862e+308, 8.1628e+01, 5.3747e+00, + 1DIAGNOSTIC, 10, -9.314977851512e-01, 1.045214653707e-03, 8.6960e+01, 5.3321e+00, + 1DIAGNOSTIC, 11, -9.326329792491e-01, 8.473494056752e-04, 9.2350e+01, 5.3902e+00, + 1DIAGNOSTIC, 12, -9.336406504008e-01, 7.032131344076e-04, 9.7714e+01, 5.3642e+00, + 1DIAGNOSTIC, 13, -9.346330886555e-01, 5.967720885353e-04, 1.0308e+02, 5.3655e+00, + 1DIAGNOSTIC, 14, -9.356032005401e-01, 5.181219218264e-04, 1.0842e+02, 5.3444e+00, + 1DIAGNOSTIC, 15, -9.365650137641e-01, 4.590817073978e-04, 1.1381e+02, 5.3905e+00, + 1DIAGNOSTIC, 16, -9.375027586571e-01, 4.118327716191e-04, 1.1916e+02, 5.3463e+00, + 1DIAGNOSTIC, 17, -9.384094076024e-01, 3.728907081268e-04, 1.2452e+02, 5.3600e+00, + 1DIAGNOSTIC, 18, -9.392865170284e-01, 3.400409028554e-04, 1.2991e+02, 5.3911e+00, + 1DIAGNOSTIC, 19, -9.401080872802e-01, 3.114910318744e-04, 1.3527e+02, 5.3586e+00, + 1DIAGNOSTIC, 20, -9.408450280105e-01, 2.854419909656e-04, 1.4064e+02, 5.3738e+00, + 1DIAGNOSTIC, 21, -9.415009049711e-01, 2.611845635737e-04, 1.4602e+02, 5.3763e+00, + 1DIAGNOSTIC, 22, -9.420910791055e-01, 2.367940728498e-04, 1.5134e+02, 5.3234e+00, + 1DIAGNOSTIC, 23, -9.426255800632e-01, 2.125161224847e-04, 1.5671e+02, 5.3654e+00, + 1DIAGNOSTIC, 24, -9.431028522016e-01, 1.886320123136e-04, 1.6205e+02, 5.3363e+00, + 1DIAGNOSTIC, 25, -9.435327292684e-01, 1.658392724603e-04, 1.6742e+02, 5.3701e+00, + 1DIAGNOSTIC, 26, -9.439284411717e-01, 1.447714435936e-04, 1.7276e+02, 5.3453e+00, + 1DIAGNOSTIC, 27, -9.442853542294e-01, 1.258236629048e-04, 1.7813e+02, 5.3706e+00, + 1DIAGNOSTIC, 28, -9.445952231762e-01, 1.092171919819e-04, 1.8348e+02, 5.3446e+00, + 1DIAGNOSTIC, 29, -9.448696591538e-01, 9.491470295880e-05, 1.8885e+02, 5.3751e+00, + 1DIAGNOSTIC, 30, -9.451063008064e-01, 8.245181755849e-05, 1.9418e+02, 5.3276e+00, + 1DIAGNOSTIC, 31, -9.453204477769e-01, 7.152135166348e-05, 1.9955e+02, 5.3698e+00, + 1DIAGNOSTIC, 32, -9.455052335313e-01, 6.186373307916e-05, 2.0492e+02, 5.3737e+00, + 1DIAGNOSTIC, 33, -9.456742346061e-01, 5.342062146155e-05, 2.1030e+02, 5.3800e+00, + 1DIAGNOSTIC, 34, -9.458246557144e-01, 4.603738971783e-05, 2.1571e+02, 5.4110e+00, + 1DIAGNOSTIC, 35, -9.459644956183e-01, 3.967440714886e-05, 2.2109e+02, 5.3766e+00, + 1DIAGNOSTIC, 36, -9.460864468862e-01, 3.428951056663e-05, 2.2642e+02, 5.3316e+00, + 1DIAGNOSTIC, 37, -9.461996840119e-01, 2.982815569377e-05, 2.3180e+02, 5.3784e+00, + 1DIAGNOSTIC, 38, -9.463041047637e-01, 2.611081615704e-05, 2.3714e+02, 5.3441e+00, + 1DIAGNOSTIC, 39, -9.463988594337e-01, 2.301263646735e-05, 2.4252e+02, 5.3733e+00, + 1DIAGNOSTIC, 40, -9.464862837636e-01, 2.037875381468e-05, 2.4787e+02, 5.3482e+00, + 1DIAGNOSTIC, 41, -9.465676791125e-01, 1.816500680172e-05, 2.5321e+02, 5.3406e+00, + 1DIAGNOSTIC, 42, -9.466442975131e-01, 1.626004901753e-05, 2.5853e+02, 5.3257e+00, + 1DIAGNOSTIC, 43, -9.467153326707e-01, 1.463390025587e-05, 2.6388e+02, 5.3457e+00, + 1DIAGNOSTIC, 44, -9.467821393223e-01, 1.323059749395e-05, 2.6924e+02, 5.3580e+00, + 1DIAGNOSTIC, 45, -9.468466514785e-01, 1.205350599724e-05, 2.7459e+02, 5.3533e+00, + 1DIAGNOSTIC, 46, -9.469064773531e-01, 1.102384256230e-05, 2.7992e+02, 5.3348e+00, + 1DIAGNOSTIC, 47, -9.469597301246e-01, 1.010811529162e-05, 2.8533e+02, 5.4028e+00, + 1DIAGNOSTIC, 48, -9.470124566257e-01, 9.307277185074e-06, 2.9065e+02, 5.3269e+00, + 1DIAGNOSTIC, 49, -9.470617719280e-01, 8.590017226983e-06, 2.9603e+02, 5.3746e+00, + 1DIAGNOSTIC, 50, -9.471092097597e-01, 7.946467507017e-06, 3.0137e+02, 5.3415e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.120698657103e-01, 1.797693134862e+308, 3.4516e+02, 4.3786e+01, + 1DIAGNOSTIC, 2, -9.130445581749e-01, 1.797693134862e+308, 3.8834e+02, 4.3187e+01, + 1DIAGNOSTIC, 3, -9.141486467862e-01, 1.797693134862e+308, 4.3169e+02, 4.3350e+01, + 1DIAGNOSTIC, 4, -9.151799520456e-01, 1.797693134862e+308, 4.7508e+02, 4.3384e+01, + 1DIAGNOSTIC, 5, -9.160672967244e-01, 1.797693134862e+308, 5.1821e+02, 4.3135e+01, + 1DIAGNOSTIC, 6, -9.168491126977e-01, 1.797693134862e+308, 5.6138e+02, 4.3163e+01, + 1DIAGNOSTIC, 7, -9.175744864712e-01, 1.797693134862e+308, 6.0488e+02, 4.3503e+01, + 1DIAGNOSTIC, 8, -9.182888944764e-01, 1.797693134862e+308, 6.4808e+02, 4.3199e+01, + 1DIAGNOSTIC, 9, -9.190033025292e-01, 1.797693134862e+308, 6.9182e+02, 4.3738e+01, + 1DIAGNOSTIC, 10, -9.197625491608e-01, 5.321508729354e-04, 7.3549e+02, 4.3674e+01, + 1DIAGNOSTIC, 11, -9.203697669094e-01, 4.559144450121e-04, 7.7903e+02, 4.3536e+01, + 1DIAGNOSTIC, 12, -9.208611991631e-01, 3.891848279169e-04, 8.2335e+02, 4.4327e+01, + 1DIAGNOSTIC, 13, -9.212692472956e-01, 3.334755808033e-04, 8.6841e+02, 4.5054e+01, + 1DIAGNOSTIC, 14, -9.215299064987e-01, 2.838886655385e-04, 9.1297e+02, 4.4568e+01, + 1DIAGNOSTIC, 15, -9.217424275275e-01, 2.376435504274e-04, 9.5845e+02, 4.5479e+01, + 1DIAGNOSTIC, 16, -9.219386877302e-01, 1.943038360238e-04, 1.0037e+03, 4.5232e+01, + 1DIAGNOSTIC, 17, -9.221131390169e-01, 1.545732291831e-04, 1.0486e+03, 4.4882e+01, + 1DIAGNOSTIC, 18, -9.222586462560e-01, 1.197746430746e-04, 1.0939e+03, 4.5367e+01, + 1DIAGNOSTIC, 19, -9.223838136094e-01, 9.119329360739e-05, 1.1380e+03, 4.4107e+01, + 1DIAGNOSTIC, 20, -9.225001665646e-01, 7.056320248599e-05, 1.1818e+03, 4.3760e+01, + Elapsed time (stage 2): 1182 + + +Total elapsed time: 1233 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:47 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:47 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:55 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:58 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:58 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12792 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:59 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:01 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:02 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12842 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:02 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:05 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:05 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12943 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:05 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12948 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:05 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:50 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:52 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:52 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:54 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:54 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:56 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:56 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:57 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:58 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:01 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:01 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:01 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:10 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC008 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:21 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC008 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:21 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC008 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:21 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 13728 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:23 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:23 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 13817 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:25 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:25 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC008_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 72.483 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/logs/proc_func_19-03-2024-21811.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:32 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC008 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/QC/sub-PNC008_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC008* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 72.533 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC008_ses-02 +========================reprocessing without filter=================== +sub-PNC008_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC008 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC008 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC008 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC008 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:51 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:51 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz is 40.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:14:55 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:17:01 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:17:15 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.44 (mm) at sub-brick 40 +++ Max delta displ in automask = 1.24 (mm) at sub-brick 40 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:29:53 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:30:10 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz is 40.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:32:18 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:34:25 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz is 40.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:36:33 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.365 -2.043 2.228 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.9 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.348 -3.123 3.494 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.3 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:41:13 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:41:42 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55a3bb3aca50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 61.1548, -106.625] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a3bb223730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a3bb3c3350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55a3bb3b3600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [77.8093, 136.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a3bb3b5e40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a3bbbbff50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55a3bbbbe270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [110.102, 61.1548, -106.625] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a3bb3b2640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a3bc6ea1c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55a3bbbbda00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [77.8093, 136.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55a3bb3b9390) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55a3bcee4300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.335014891540e-01, 1.797693134862e+308, 5.1157e-02, 5.1156e-02, + 2DIAGNOSTIC, 2, -7.347107129196e-01, 1.797693134862e+308, 5.2604e-02, 1.4470e-03, + 2DIAGNOSTIC, 3, -7.373508915253e-01, 1.797693134862e+308, 5.4140e-02, 1.5361e-03, + 2DIAGNOSTIC, 4, -7.451432135280e-01, 1.797693134862e+308, 5.5658e-02, 1.5180e-03, + 2DIAGNOSTIC, 5, -7.608186218618e-01, 1.797693134862e+308, 5.7235e-02, 1.5769e-03, + 2DIAGNOSTIC, 6, -7.748527515459e-01, 1.797693134862e+308, 5.9771e-02, 2.5361e-03, + 2DIAGNOSTIC, 7, -7.851840548471e-01, 1.797693134862e+308, 6.2086e-02, 2.3148e-03, + 2DIAGNOSTIC, 8, -7.854823477053e-01, 1.797693134862e+308, 6.3671e-02, 1.5850e-03, + 2DIAGNOSTIC, 9, -7.897569444364e-01, 1.797693134862e+308, 6.5361e-02, 1.6899e-03, + 2DIAGNOSTIC, 10, -7.920467586194e-01, 6.009664452093e-03, 6.7262e-02, 1.9011e-03, + 2DIAGNOSTIC, 11, -7.956557070119e-01, 5.167643074198e-03, 6.9371e-02, 2.1091e-03, + 2DIAGNOSTIC, 12, -7.988535098025e-01, 4.144640219866e-03, 7.1218e-02, 1.8470e-03, + 2DIAGNOSTIC, 13, -8.046227041817e-01, 3.151601760007e-03, 7.3064e-02, 1.8461e-03, + 2DIAGNOSTIC, 14, -8.079684583306e-01, 2.305171198468e-03, 7.5435e-02, 2.3711e-03, + 2DIAGNOSTIC, 15, -8.087477843577e-01, 1.759953050511e-03, 7.7029e-02, 1.5941e-03, + 2DIAGNOSTIC, 16, -8.137904653767e-01, 1.554710334159e-03, 7.8924e-02, 1.8950e-03, + 2DIAGNOSTIC, 17, -8.164038443137e-01, 1.506829905169e-03, 8.0524e-02, 1.6000e-03, + 2DIAGNOSTIC, 18, -8.203350583855e-01, 1.407453400958e-03, 8.2284e-02, 1.7600e-03, + 2DIAGNOSTIC, 19, -8.221134539424e-01, 1.303222265856e-03, 8.5022e-02, 2.7380e-03, + 2DIAGNOSTIC, 20, -8.224213376740e-01, 1.136492954903e-03, 8.6545e-02, 1.5230e-03, + 2DIAGNOSTIC, 21, -8.231291255854e-01, 9.550004962231e-04, 8.8105e-02, 1.5600e-03, + 2DIAGNOSTIC, 22, -8.244184854703e-01, 7.721837165462e-04, 8.9680e-02, 1.5750e-03, + 2DIAGNOSTIC, 23, -8.244431100160e-01, 6.225805269549e-04, 9.2023e-02, 2.3429e-03, + 2DIAGNOSTIC, 24, -8.244554970745e-01, 4.788299712478e-04, 9.3584e-02, 1.5609e-03, + 2DIAGNOSTIC, 25, -8.244624626753e-01, 3.128808377571e-04, 9.5102e-02, 1.5180e-03, + 2DIAGNOSTIC, 26, -8.244774335008e-01, 2.001286248245e-04, 9.6651e-02, 1.5490e-03, + 2DIAGNOSTIC, 27, -8.244983494644e-01, 1.106358464346e-04, 9.8445e-02, 1.7941e-03, + 2DIAGNOSTIC, 28, -8.245447726393e-01, 6.750790848167e-05, 1.0047e-01, 2.0239e-03, + 2DIAGNOSTIC, 29, -8.265895537061e-01, 6.832400946934e-05, 1.0631e-01, 5.8410e-03, + 2DIAGNOSTIC, 30, -8.265895507956e-01, 6.564833501365e-05, 1.0782e-01, 1.5111e-03, + 2DIAGNOSTIC, 31, -8.265895515824e-01, 6.501913911355e-05, 1.0933e-01, 1.5121e-03, + 2DIAGNOSTIC, 32, -8.265895529127e-01, 7.301994607631e-05, 1.1086e-01, 1.5311e-03, + 2DIAGNOSTIC, 33, -8.265895551614e-01, 7.387094207592e-05, 1.1232e-01, 1.4579e-03, + 2DIAGNOSTIC, 34, -8.265895589622e-01, 6.752923178195e-05, 1.1381e-01, 1.4911e-03, + 2DIAGNOSTIC, 35, -8.265895653838e-01, 5.523895777024e-05, 1.1534e-01, 1.5249e-03, + 2DIAGNOSTIC, 36, -8.265895762272e-01, 3.896419398300e-05, 1.1683e-01, 1.4892e-03, + 2DIAGNOSTIC, 37, -8.265895945192e-01, 2.039596909139e-05, 1.1833e-01, 1.5020e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.444503729251e-01, 1.797693134862e+308, 1.6537e-01, 4.7045e-02, + 2DIAGNOSTIC, 2, -4.440337092359e-01, 1.797693134862e+308, 1.6790e-01, 2.5291e-03, + 2DIAGNOSTIC, 3, -4.451090691903e-01, 1.797693134862e+308, 1.7052e-01, 2.6190e-03, + 2DIAGNOSTIC, 4, -4.460548406381e-01, 1.797693134862e+308, 1.7300e-01, 2.4779e-03, + 2DIAGNOSTIC, 5, -4.473370051872e-01, 1.797693134862e+308, 1.7518e-01, 2.1770e-03, + 2DIAGNOSTIC, 6, -4.483458485082e-01, 1.797693134862e+308, 1.7820e-01, 3.0200e-03, + 2DIAGNOSTIC, 7, -4.490099844258e-01, 1.797693134862e+308, 1.8040e-01, 2.2011e-03, + 2DIAGNOSTIC, 8, -4.497990093103e-01, 1.797693134862e+308, 1.8308e-01, 2.6851e-03, + 2DIAGNOSTIC, 9, -4.524769996556e-01, 1.797693134862e+308, 1.8633e-01, 3.2430e-03, + 2DIAGNOSTIC, 10, -4.533101748691e-01, 1.340182076943e-03, 1.8930e-01, 2.9778e-03, + 2DIAGNOSTIC, 11, -4.548731634222e-01, 1.372015919521e-03, 1.9200e-01, 2.7001e-03, + 2DIAGNOSTIC, 12, -4.582314308635e-01, 1.429684125379e-03, 1.9456e-01, 2.5549e-03, + 2DIAGNOSTIC, 13, -4.653228191792e-01, 1.740108909599e-03, 1.9704e-01, 2.4831e-03, + 2DIAGNOSTIC, 14, -4.815449338619e-01, 2.603197909195e-03, 2.0014e-01, 3.1021e-03, + 2DIAGNOSTIC, 15, -4.834339036585e-01, 3.224139820492e-03, 2.0293e-01, 2.7831e-03, + 2DIAGNOSTIC, 16, -4.863783407334e-01, 3.630599089651e-03, 2.0539e-01, 2.4660e-03, + 2DIAGNOSTIC, 17, -5.014584549001e-01, 4.224325412150e-03, 2.0811e-01, 2.7189e-03, + 2DIAGNOSTIC, 18, -5.062432156855e-01, 4.525781920464e-03, 2.1245e-01, 4.3411e-03, + 2DIAGNOSTIC, 19, -5.065542352051e-01, 4.466339860770e-03, 2.1499e-01, 2.5380e-03, + 2DIAGNOSTIC, 20, -5.075092883991e-01, 4.063610135387e-03, 2.1759e-01, 2.5969e-03, + 2DIAGNOSTIC, 21, -5.089213472647e-01, 3.416674437605e-03, 2.2002e-01, 2.4281e-03, + 2DIAGNOSTIC, 22, -5.097815376242e-01, 2.623571119355e-03, 2.2242e-01, 2.4040e-03, + 2DIAGNOSTIC, 23, -5.117379608279e-01, 1.883196651503e-03, 2.2500e-01, 2.5761e-03, + 2DIAGNOSTIC, 24, -5.216669628601e-01, 1.690104211405e-03, 2.2792e-01, 2.9199e-03, + 2DIAGNOSTIC, 25, -5.281384260296e-01, 1.552497503401e-03, 2.3171e-01, 3.7949e-03, + 2DIAGNOSTIC, 26, -5.294096142290e-01, 1.367552047206e-03, 2.3438e-01, 2.6720e-03, + 2DIAGNOSTIC, 27, -5.300002060235e-01, 1.414112250047e-03, 2.3683e-01, 2.4509e-03, + 2DIAGNOSTIC, 28, -5.308335628475e-01, 1.443599565270e-03, 2.3927e-01, 2.4362e-03, + 2DIAGNOSTIC, 29, -5.348003634157e-01, 1.417465926624e-03, 2.4167e-01, 2.3999e-03, + 2DIAGNOSTIC, 30, -5.474690267844e-01, 1.519450133731e-03, 2.4403e-01, 2.3580e-03, + 2DIAGNOSTIC, 31, -5.869278023003e-01, 2.229194865246e-03, 2.4673e-01, 2.7049e-03, + 2DIAGNOSTIC, 32, -6.162115363603e-01, 3.200248442112e-03, 2.5073e-01, 4.0009e-03, + 2DIAGNOSTIC, 33, -6.177552222094e-01, 3.851000974278e-03, 2.5306e-01, 2.3279e-03, + 2DIAGNOSTIC, 34, -6.282618403807e-01, 4.441295995215e-03, 2.5537e-01, 2.3119e-03, + 2DIAGNOSTIC, 35, -6.409097445383e-01, 4.871721716704e-03, 2.5771e-01, 2.3372e-03, + 2DIAGNOSTIC, 36, -6.492648152787e-01, 4.944254610497e-03, 2.6026e-01, 2.5530e-03, + 2DIAGNOSTIC, 37, -6.511798468319e-01, 4.576939493298e-03, 2.6312e-01, 2.8529e-03, + 2DIAGNOSTIC, 38, -6.513002162265e-01, 3.826038268441e-03, 2.6571e-01, 2.5961e-03, + 2DIAGNOSTIC, 39, -6.512202304469e-01, 2.822960997045e-03, 2.6831e-01, 2.6000e-03, + 2DIAGNOSTIC, 40, -6.515117409607e-01, 1.777226278566e-03, 2.7086e-01, 2.5499e-03, + 2DIAGNOSTIC, 41, -6.514605528961e-01, 1.133900141974e-03, 2.7340e-01, 2.5392e-03, + 2DIAGNOSTIC, 42, -6.519024263056e-01, 8.036197731671e-04, 2.7594e-01, 2.5389e-03, + 2DIAGNOSTIC, 43, -6.525901233716e-01, 4.432054338535e-04, 2.7936e-01, 3.4211e-03, + 2DIAGNOSTIC, 44, -6.529296323580e-01, 1.887032309770e-04, 2.8252e-01, 3.1569e-03, + 2DIAGNOSTIC, 45, -6.529935608092e-01, 7.690719462184e-05, 2.8576e-01, 3.2361e-03, + 2DIAGNOSTIC, 46, -6.530017748790e-01, 5.892626657426e-05, 2.8871e-01, 2.9590e-03, + 2DIAGNOSTIC, 47, -6.530084374400e-01, 5.771244046349e-05, 2.9114e-01, 2.4300e-03, + 2DIAGNOSTIC, 48, -6.530196840792e-01, 5.246958519997e-05, 2.9351e-01, 2.3630e-03, + 2DIAGNOSTIC, 49, -6.530454854670e-01, 4.186551249035e-05, 2.9760e-01, 4.0939e-03, + 2DIAGNOSTIC, 50, -6.530461352675e-01, 3.102318319536e-05, 3.0069e-01, 3.0849e-03, + 2DIAGNOSTIC, 51, -6.530468423811e-01, 1.729489987226e-05, 3.0368e-01, 2.9910e-03, + 2DIAGNOSTIC, 52, -6.530481565095e-01, 6.844795405761e-06, 3.0654e-01, 2.8608e-03, + 2DIAGNOSTIC, 53, -6.530504840272e-01, 2.851687061198e-06, 3.0935e-01, 2.8121e-03, + 2DIAGNOSTIC, 54, -6.531458934412e-01, 2.917374551208e-06, 3.1558e-01, 6.2320e-03, + 2DIAGNOSTIC, 55, -6.531458943424e-01, 3.333000299331e-06, 3.1881e-01, 3.2251e-03, + 2DIAGNOSTIC, 56, -6.531458959574e-01, 3.565171976905e-06, 3.2170e-01, 2.8949e-03, + 2DIAGNOSTIC, 57, -6.531459014558e-01, 3.582375654371e-06, 3.2463e-01, 2.9280e-03, + 2DIAGNOSTIC, 58, -6.531459301234e-01, 3.405946692195e-06, 3.2746e-01, 2.8300e-03, + 2DIAGNOSTIC, 59, -6.531460260545e-01, 3.177876035893e-06, 3.3028e-01, 2.8198e-03, + 2DIAGNOSTIC, 60, -6.531462812226e-01, 2.718323550768e-06, 3.3319e-01, 2.9130e-03, + 2DIAGNOSTIC, 61, -6.531485663797e-01, 2.111080859454e-06, 3.3605e-01, 2.8551e-03, + 2DIAGNOSTIC, 62, -6.531501716322e-01, 1.412966925254e-06, 3.3921e-01, 3.1621e-03, + 2DIAGNOSTIC, 63, -6.532414470031e-01, 1.379343488889e-06, 3.4226e-01, 3.0510e-03, + 2DIAGNOSTIC, 64, -6.531503986861e-01, 1.283987431620e-06, 3.4542e-01, 3.1610e-03, + 2DIAGNOSTIC, 65, -6.532427302653e-01, 1.855883603141e-06, 3.4898e-01, 3.5601e-03, + 2DIAGNOSTIC, 66, -6.532435883152e-01, 2.272534030515e-06, 3.5818e-01, 9.1982e-03, + 2DIAGNOSTIC, 67, -6.532435882771e-01, 2.503608299870e-06, 3.6096e-01, 2.7771e-03, + 2DIAGNOSTIC, 68, -6.532435883673e-01, 2.540755828392e-06, 3.6374e-01, 2.7869e-03, + 2DIAGNOSTIC, 69, -6.532435885199e-01, 2.390352574325e-06, 3.6656e-01, 2.8181e-03, + 2DIAGNOSTIC, 70, -6.532435887778e-01, 2.068286527313e-06, 3.6942e-01, 2.8529e-03, + 2DIAGNOSTIC, 71, -6.532435892137e-01, 1.617016221214e-06, 3.7218e-01, 2.7640e-03, + 2DIAGNOSTIC, 72, -6.532435899504e-01, 1.068615473707e-06, 3.7500e-01, 2.8250e-03, + 2DIAGNOSTIC, 73, -6.532435911947e-01, 1.117723880659e-06, 3.7780e-01, 2.7950e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.816913370583e-01, 1.797693134862e+308, 4.4763e-01, 6.9833e-02, + 2DIAGNOSTIC, 2, -4.822407844527e-01, 1.797693134862e+308, 4.5848e-01, 1.0850e-02, + 2DIAGNOSTIC, 3, -4.830980293545e-01, 1.797693134862e+308, 4.6924e-01, 1.0753e-02, + 2DIAGNOSTIC, 4, -4.841518607038e-01, 1.797693134862e+308, 4.8018e-01, 1.0941e-02, + 2DIAGNOSTIC, 5, -4.855919068590e-01, 1.797693134862e+308, 4.9121e-01, 1.1038e-02, + 2DIAGNOSTIC, 6, -4.861249571265e-01, 1.797693134862e+308, 5.0195e-01, 1.0737e-02, + 2DIAGNOSTIC, 7, -4.881257311949e-01, 1.797693134862e+308, 5.1468e-01, 1.2726e-02, + 2DIAGNOSTIC, 8, -4.896429802791e-01, 1.797693134862e+308, 5.2634e-01, 1.1667e-02, + 2DIAGNOSTIC, 9, -4.901308460799e-01, 1.797693134862e+308, 5.4276e-01, 1.6413e-02, + 2DIAGNOSTIC, 10, -4.904732817688e-01, 1.301864512103e-03, 5.5937e-01, 1.6608e-02, + 2DIAGNOSTIC, 11, -4.904308576096e-01, 1.120944804176e-03, 5.7123e-01, 1.1860e-02, + 2DIAGNOSTIC, 12, -4.905208322631e-01, 9.005075456093e-04, 5.8317e-01, 1.1941e-02, + 2DIAGNOSTIC, 13, -4.907033144189e-01, 6.781990204208e-04, 5.9490e-01, 1.1735e-02, + 2DIAGNOSTIC, 14, -4.908817442256e-01, 4.769036583740e-04, 6.0673e-01, 1.1832e-02, + 2DIAGNOSTIC, 15, -4.910501488514e-01, 3.227644675320e-04, 6.2207e-01, 1.5333e-02, + 2DIAGNOSTIC, 16, -4.911478057908e-01, 1.804347342836e-04, 6.3577e-01, 1.3708e-02, + 2DIAGNOSTIC, 17, -4.911661683635e-01, 1.066037665500e-04, 6.4925e-01, 1.3478e-02, + 2DIAGNOSTIC, 18, -4.911629184557e-01, 7.995284653085e-05, 6.6267e-01, 1.3418e-02, + 2DIAGNOSTIC, 19, -4.911999921981e-01, 6.461287158752e-05, 6.7776e-01, 1.5088e-02, + 2DIAGNOSTIC, 20, -4.911984607944e-01, 5.490291750113e-05, 6.9114e-01, 1.3380e-02, + 2DIAGNOSTIC, 21, -4.911872948271e-01, 3.969113156108e-05, 7.0296e-01, 1.1825e-02, + 2DIAGNOSTIC, 22, -4.911854982285e-01, 2.463422053626e-05, 7.1592e-01, 1.2954e-02, + 2DIAGNOSTIC, 23, -4.912088285002e-01, 1.388202581447e-05, 7.2929e-01, 1.3377e-02, + 2DIAGNOSTIC, 24, -4.912137794897e-01, 7.183235218318e-06, 7.4134e-01, 1.2049e-02, + 2DIAGNOSTIC, 25, -4.912134171209e-01, 4.319145858300e-06, 7.5219e-01, 1.0849e-02, + 2DIAGNOSTIC, 26, -4.912367402984e-01, 4.109268296436e-06, 7.6243e-01, 1.0242e-02, + 2DIAGNOSTIC, 27, -4.912626257689e-01, 4.593763482927e-06, 7.7635e-01, 1.3915e-02, + 2DIAGNOSTIC, 28, -4.912703156949e-01, 4.769667899661e-06, 7.8688e-01, 1.0532e-02, + 2DIAGNOSTIC, 29, -4.912863529810e-01, 5.657953529324e-06, 7.9829e-01, 1.1412e-02, + 2DIAGNOSTIC, 30, -4.913108580472e-01, 6.512923208600e-06, 8.1123e-01, 1.2934e-02, + 2DIAGNOSTIC, 31, -4.912882698650e-01, 6.156075987883e-06, 8.2278e-01, 1.1558e-02, + 2DIAGNOSTIC, 32, -4.913083229788e-01, 5.667722446173e-06, 8.3471e-01, 1.1925e-02, + 2DIAGNOSTIC, 33, -4.913215935770e-01, 5.401179314107e-06, 8.4636e-01, 1.1650e-02, + 2DIAGNOSTIC, 34, -4.913243703344e-01, 4.858245135304e-06, 8.6438e-01, 1.8019e-02, + 2DIAGNOSTIC, 35, -4.913298729631e-01, 4.055749096035e-06, 8.7469e-01, 1.0309e-02, + 2DIAGNOSTIC, 36, -4.913277296464e-01, 3.339118579873e-06, 8.8812e-01, 1.3433e-02, + 2DIAGNOSTIC, 37, -4.913223595964e-01, 2.753485045956e-06, 8.9982e-01, 1.1700e-02, + 2DIAGNOSTIC, 38, -4.913090699789e-01, 1.923639085657e-06, 9.1053e-01, 1.0713e-02, + 2DIAGNOSTIC, 39, -4.912961407592e-01, 1.072197911439e-06, 9.2129e-01, 1.0759e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.112736399792e-01, 1.797693134862e+308, 1.1289e+00, 2.0761e-01, + Elapsed time (stage 0): 1.1576e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.662159009639e-01, 1.797693134862e+308, 3.1294e-02, 3.1294e-02, + 2DIAGNOSTIC, 2, -9.677087349493e-01, 1.797693134862e+308, 3.2386e-02, 1.0920e-03, + 2DIAGNOSTIC, 3, -9.704298924363e-01, 1.797693134862e+308, 3.3401e-02, 1.0149e-03, + 2DIAGNOSTIC, 4, -9.765363865042e-01, 1.797693134862e+308, 3.4694e-02, 1.2929e-03, + 2DIAGNOSTIC, 5, -9.872043683560e-01, 1.797693134862e+308, 3.5802e-02, 1.1079e-03, + 2DIAGNOSTIC, 6, -9.967942073634e-01, 1.797693134862e+308, 3.7084e-02, 1.2820e-03, + 2DIAGNOSTIC, 7, -1.009602027764e+00, 1.797693134862e+308, 3.8452e-02, 1.3678e-03, + 2DIAGNOSTIC, 8, -1.011116733810e+00, 1.797693134862e+308, 3.9824e-02, 1.3728e-03, + 2DIAGNOSTIC, 9, -1.018824003934e+00, 1.797693134862e+308, 4.1745e-02, 1.9202e-03, + 2DIAGNOSTIC, 10, -1.016103879534e+00, 4.017710415081e-03, 4.3280e-02, 1.5349e-03, + 2DIAGNOSTIC, 11, -1.014391766189e+00, 3.370210323435e-03, 4.4806e-02, 1.5261e-03, + 2DIAGNOSTIC, 12, -1.015745399853e+00, 2.599918266578e-03, 4.6168e-02, 1.3621e-03, + 2DIAGNOSTIC, 13, -1.018449700103e+00, 1.832584885716e-03, 4.7551e-02, 1.3831e-03, + 2DIAGNOSTIC, 14, -1.022163120742e+00, 1.206242754346e-03, 4.9035e-02, 1.4839e-03, + 2DIAGNOSTIC, 15, -1.022584623146e+00, 7.629996433718e-04, 5.1140e-02, 2.1050e-03, + 2DIAGNOSTIC, 16, -1.022656534770e+00, 4.758436451616e-04, 5.2518e-02, 1.3781e-03, + 2DIAGNOSTIC, 17, -1.023122026546e+00, 4.013749814032e-04, 5.3857e-02, 1.3390e-03, + 2DIAGNOSTIC, 18, -1.023727388044e+00, 3.262470411201e-04, 5.5140e-02, 1.2829e-03, + 2DIAGNOSTIC, 19, -1.024410224502e+00, 3.538391557419e-04, 5.6481e-02, 1.3411e-03, + 2DIAGNOSTIC, 20, -1.025680092957e+00, 3.266162230245e-04, 5.7914e-02, 1.4331e-03, + 2DIAGNOSTIC, 21, -1.030698321939e+00, 3.165379134756e-04, 5.9495e-02, 1.5810e-03, + 2DIAGNOSTIC, 22, -1.036489840029e+00, 3.674473685479e-04, 6.2207e-02, 2.7120e-03, + 2DIAGNOSTIC, 23, -1.036745784677e+00, 4.133790707364e-04, 6.3508e-02, 1.3011e-03, + 2DIAGNOSTIC, 24, -1.037500833548e+00, 4.705440769652e-04, 6.4870e-02, 1.3618e-03, + 2DIAGNOSTIC, 25, -1.038237912991e+00, 4.925255919402e-04, 6.6210e-02, 1.3399e-03, + 2DIAGNOSTIC, 26, -1.038749344313e+00, 4.716722762742e-04, 6.7582e-02, 1.3721e-03, + 2DIAGNOSTIC, 27, -1.039296548004e+00, 4.175998325404e-04, 6.8892e-02, 1.3099e-03, + 2DIAGNOSTIC, 28, -1.040472637651e+00, 3.465451886774e-04, 7.0530e-02, 1.6379e-03, + 2DIAGNOSTIC, 29, -1.040921245431e+00, 2.596273877941e-04, 7.2820e-02, 2.2900e-03, + 2DIAGNOSTIC, 30, -1.038161262361e+00, 1.396351663843e-04, 7.4417e-02, 1.5969e-03, + 2DIAGNOSTIC, 31, -1.037264924578e+00, 5.102114403487e-05, 7.5849e-02, 1.4322e-03, + 2DIAGNOSTIC, 32, -1.038513369395e+00, 2.469936711282e-05, 7.7787e-02, 1.9379e-03, + 2DIAGNOSTIC, 33, -1.040470002660e+00, 1.544815042907e-05, 8.0237e-02, 2.4500e-03, + 2DIAGNOSTIC, 34, -1.040853227411e+00, 1.419348638450e-05, 8.2259e-02, 2.0220e-03, + 2DIAGNOSTIC, 35, -1.041320381389e+00, 2.207355590388e-05, 8.3984e-02, 1.7250e-03, + 2DIAGNOSTIC, 36, -1.041646605960e+00, 3.435951280756e-05, 8.5999e-02, 2.0149e-03, + 2DIAGNOSTIC, 37, -1.041820485451e+00, 4.748733418476e-05, 8.9065e-02, 3.0661e-03, + 2DIAGNOSTIC, 38, -1.041843737009e+00, 6.356816853496e-05, 9.0576e-02, 1.5111e-03, + 2DIAGNOSTIC, 39, -1.041949807364e+00, 7.735695489668e-05, 9.2094e-02, 1.5180e-03, + 2DIAGNOSTIC, 40, -1.042055181351e+00, 6.514224033337e-05, 9.3644e-02, 1.5500e-03, + 2DIAGNOSTIC, 41, -1.042106889115e+00, 4.157365663186e-05, 9.5132e-02, 1.4880e-03, + 2DIAGNOSTIC, 42, -1.042219880842e+00, 2.394458682846e-05, 9.6666e-02, 1.5340e-03, + 2DIAGNOSTIC, 43, -1.042593041253e+00, 1.995464439361e-05, 9.8874e-02, 2.2080e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.627079530356e-01, 1.797693134862e+308, 1.4135e-01, 4.2473e-02, + 2DIAGNOSTIC, 2, -6.627024960615e-01, 1.797693134862e+308, 1.4396e-01, 2.6140e-03, + 2DIAGNOSTIC, 3, -6.645927302966e-01, 1.797693134862e+308, 1.4655e-01, 2.5899e-03, + 2DIAGNOSTIC, 4, -6.675176290356e-01, 1.797693134862e+308, 1.4953e-01, 2.9790e-03, + 2DIAGNOSTIC, 5, -6.711912065454e-01, 1.797693134862e+308, 1.5222e-01, 2.6939e-03, + 2DIAGNOSTIC, 6, -6.755200226678e-01, 1.797693134862e+308, 1.5481e-01, 2.5890e-03, + 2DIAGNOSTIC, 7, -6.802982216876e-01, 1.797693134862e+308, 1.5712e-01, 2.3038e-03, + 2DIAGNOSTIC, 8, -6.859729301334e-01, 1.797693134862e+308, 1.5977e-01, 2.6560e-03, + 2DIAGNOSTIC, 9, -6.958911069908e-01, 1.797693134862e+308, 1.6185e-01, 2.0750e-03, + 2DIAGNOSTIC, 10, -6.987142029582e-01, 3.645233650506e-03, 1.6421e-01, 2.3601e-03, + 2DIAGNOSTIC, 11, -7.017185155022e-01, 3.673583951629e-03, 1.6709e-01, 2.8870e-03, + 2DIAGNOSTIC, 12, -7.037430300022e-01, 3.439389106487e-03, 1.6961e-01, 2.5110e-03, + 2DIAGNOSTIC, 13, -7.053612403470e-01, 3.041577642296e-03, 1.7186e-01, 2.2559e-03, + 2DIAGNOSTIC, 14, -7.066692443363e-01, 2.547796424294e-03, 1.7415e-01, 2.2862e-03, + 2DIAGNOSTIC, 15, -7.074059715041e-01, 2.010111257075e-03, 1.7731e-01, 3.1650e-03, + 2DIAGNOSTIC, 16, -7.075403624808e-01, 1.474324115723e-03, 1.7981e-01, 2.4960e-03, + 2DIAGNOSTIC, 17, -7.078695881604e-01, 9.914478482357e-04, 1.8237e-01, 2.5570e-03, + 2DIAGNOSTIC, 18, -7.080117369275e-01, 6.001194132754e-04, 1.8543e-01, 3.0658e-03, + 2DIAGNOSTIC, 19, -7.079802640709e-01, 4.089251384926e-04, 1.8790e-01, 2.4698e-03, + 2DIAGNOSTIC, 20, -7.079611430145e-01, 2.562105803534e-04, 1.9013e-01, 2.2290e-03, + 2DIAGNOSTIC, 21, -7.078878713569e-01, 1.515740575436e-04, 1.9267e-01, 2.5401e-03, + 2DIAGNOSTIC, 22, -7.079345846071e-01, 8.082961986816e-05, 1.9489e-01, 2.2190e-03, + 2DIAGNOSTIC, 23, -7.079238806834e-01, 3.700602665003e-05, 1.9714e-01, 2.2471e-03, + 2DIAGNOSTIC, 24, -7.080100934151e-01, 1.711015866228e-05, 1.9937e-01, 2.2321e-03, + 2DIAGNOSTIC, 25, -7.080220717137e-01, 9.630306039857e-06, 2.0158e-01, 2.2101e-03, + 2DIAGNOSTIC, 26, -7.080673752565e-01, 4.674676511392e-06, 2.0414e-01, 2.5580e-03, + 2DIAGNOSTIC, 27, -7.080867282310e-01, 4.968220567010e-06, 2.0644e-01, 2.3050e-03, + 2DIAGNOSTIC, 28, -7.081708152290e-01, 8.173976252412e-06, 2.0898e-01, 2.5420e-03, + 2DIAGNOSTIC, 29, -7.084143889578e-01, 1.344151851547e-05, 2.1241e-01, 3.4261e-03, + 2DIAGNOSTIC, 30, -7.084359438977e-01, 1.716809509209e-05, 2.1493e-01, 2.5201e-03, + 2DIAGNOSTIC, 31, -7.083965212998e-01, 1.768269448524e-05, 2.1724e-01, 2.3110e-03, + 2DIAGNOSTIC, 32, -7.085515113898e-01, 1.923340189611e-05, 2.2047e-01, 3.2330e-03, + 2DIAGNOSTIC, 33, -7.085778575109e-01, 1.904837678859e-05, 2.2315e-01, 2.6779e-03, + 2DIAGNOSTIC, 34, -7.083572352786e-01, 1.550897044024e-05, 2.2581e-01, 2.6581e-03, + 2DIAGNOSTIC, 35, -7.082953588995e-01, 1.030858791956e-05, 2.2812e-01, 2.3081e-03, + 2DIAGNOSTIC, 36, -7.082470309356e-01, 4.519396615898e-06, 2.3040e-01, 2.2840e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.467030664208e-01, 1.797693134862e+308, 2.9191e-01, 6.1512e-02, + 2DIAGNOSTIC, 2, -5.469886325723e-01, 1.797693134862e+308, 3.0373e-01, 1.1816e-02, + 2DIAGNOSTIC, 3, -5.474420201139e-01, 1.797693134862e+308, 3.1530e-01, 1.1569e-02, + 2DIAGNOSTIC, 4, -5.479650681188e-01, 1.797693134862e+308, 3.2702e-01, 1.1717e-02, + 2DIAGNOSTIC, 5, -5.488059805589e-01, 1.797693134862e+308, 3.3997e-01, 1.2958e-02, + 2DIAGNOSTIC, 6, -5.511214911535e-01, 1.797693134862e+308, 3.5369e-01, 1.3713e-02, + 2DIAGNOSTIC, 7, -5.521369282430e-01, 1.797693134862e+308, 3.6650e-01, 1.2818e-02, + 2DIAGNOSTIC, 8, -5.531115339133e-01, 1.797693134862e+308, 3.7927e-01, 1.2761e-02, + 2DIAGNOSTIC, 9, -5.543751039910e-01, 1.797693134862e+308, 3.9341e-01, 1.4149e-02, + 2DIAGNOSTIC, 10, -5.563829876058e-01, 1.161880354867e-03, 4.0776e-01, 1.4349e-02, + 2DIAGNOSTIC, 11, -5.570351171984e-01, 1.153204754452e-03, 4.2299e-01, 1.5229e-02, + 2DIAGNOSTIC, 12, -5.573326235160e-01, 1.068086255352e-03, 4.3447e-01, 1.1477e-02, + 2DIAGNOSTIC, 13, -5.574045825198e-01, 9.224454697678e-04, 4.5678e-01, 2.2313e-02, + 2DIAGNOSTIC, 14, -5.574084940873e-01, 7.336582472489e-04, 4.6847e-01, 1.1691e-02, + 2DIAGNOSTIC, 15, -5.574228050359e-01, 5.303101507257e-04, 4.8230e-01, 1.3825e-02, + 2DIAGNOSTIC, 16, -5.574326706176e-01, 3.783553158963e-04, 4.9569e-01, 1.3391e-02, + 2DIAGNOSTIC, 17, -5.574395322102e-01, 2.410367898483e-04, 5.0907e-01, 1.3383e-02, + 2DIAGNOSTIC, 18, -5.574348058402e-01, 1.245616476326e-04, 5.2283e-01, 1.3756e-02, + 2DIAGNOSTIC, 19, -5.574459013440e-01, 4.227448303654e-05, 5.3529e-01, 1.2461e-02, + 2DIAGNOSTIC, 20, -5.574500700463e-01, 1.574180404521e-05, 5.4959e-01, 1.4303e-02, + 2DIAGNOSTIC, 21, -5.574614513851e-01, 6.447028614701e-06, 5.6188e-01, 1.2292e-02, + 2DIAGNOSTIC, 22, -5.574615234612e-01, 4.431573859903e-06, 5.7557e-01, 1.3687e-02, + 2DIAGNOSTIC, 23, -5.574762634396e-01, 4.255976745228e-06, 5.8930e-01, 1.3730e-02, + 2DIAGNOSTIC, 24, -5.574818828626e-01, 4.017282866642e-06, 6.0149e-01, 1.2188e-02, + 2DIAGNOSTIC, 25, -5.574892113161e-01, 3.980759054750e-06, 6.1531e-01, 1.3824e-02, + 2DIAGNOSTIC, 26, -5.574959364070e-01, 4.016299033585e-06, 6.2724e-01, 1.1928e-02, + 2DIAGNOSTIC, 27, -5.575055479631e-01, 4.103523069794e-06, 6.4034e-01, 1.3103e-02, + 2DIAGNOSTIC, 28, -5.575303321875e-01, 4.268172004156e-06, 6.5228e-01, 1.1940e-02, + 2DIAGNOSTIC, 29, -5.575756416049e-01, 5.110699943890e-06, 6.6607e-01, 1.3790e-02, + 2DIAGNOSTIC, 30, -5.575930623148e-01, 5.867531490629e-06, 6.8088e-01, 1.4807e-02, + 2DIAGNOSTIC, 31, -5.575823496964e-01, 6.140778946596e-06, 6.9530e-01, 1.4422e-02, + 2DIAGNOSTIC, 32, -5.575664146518e-01, 5.670803599707e-06, 7.0832e-01, 1.3019e-02, + 2DIAGNOSTIC, 33, -5.575663600542e-01, 5.014368335055e-06, 7.2723e-01, 1.8911e-02, + 2DIAGNOSTIC, 34, -5.575777894850e-01, 4.250178030178e-06, 7.4160e-01, 1.4362e-02, + 2DIAGNOSTIC, 35, -5.575784981562e-01, 3.322741551907e-06, 7.5643e-01, 1.4830e-02, + 2DIAGNOSTIC, 36, -5.575795100844e-01, 2.342739594766e-06, 7.7197e-01, 1.5540e-02, + 2DIAGNOSTIC, 37, -5.575715038679e-01, 1.307777846463e-06, 7.8585e-01, 1.3885e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.664100109579e-01, 1.797693134862e+308, 9.7352e-01, 1.8767e-01, + Elapsed time (stage 1): 9.9574e-01 + + +Total elapsed time: 2.1538e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:41:46 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 50 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 70 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 89.58% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 89.58% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[13960 1522 2731 1314 3268 3774 478 1099 1206 10003 1102 472 + 610 486 356 3568 164 1796 210 260 536 721 666 161 + 0 267 0 0 0 0 0 0 0 0 0 0 + 0 0 0 0 0 0 0 0 0 0 0 0 + 0 0] +[107392 25314 36155 60292 21188 28518 21471 16868 20508 17499 + 12965 10909 12961 8945 9179 9606 8603 5431 5839 7304 + 3847 5389 5764 3765 3133 3110 2119 2368 2667 2397 + 1713 1821 1787 3889 1835 1249 922 1322 939 1624 + 1423 1252 622 498 1483 882 902 358 417 777] +[ 1089 0 727 5203 0 167 0 0 0 0 381 0 + 1329 1282 328 937 1289 321 0 147 0 0 187 0 + 6339 1409 141 875 0 0 0 4261 7814 223 9851 13499 + 0 0 140 256 767 0 680 1438 0 244 0 603 + 5202 145] +[ 20839 3003 8687 1056 377 7142 12864 4827 1500 1453 + 11470 2937 13877 13820 3406 13965 4088 4062 2176 956 + 1583 2461 1509 7861 0 15105 3089 675 5842 7275 + 4233 838 2946 16510 509 112005 7223 2520 6434 9882 + 3444 1992 8484 160 0 2203 817 8203 2488 2437] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:50:49 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:50:54 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:35 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:35 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:35 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:45 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:48 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC008 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:59 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:55:23 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:57:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:57:09 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:58:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:58:27 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55ff9a8a0d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.2585, 136.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ff9a717730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbfb60d1010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55ff9a8a4020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.604, -107.075] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ff9a8aa0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbfb2a12010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55ff9a8ba840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [78.2585, 136.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ff9a8a6890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbfadd3e010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55ff9a8be3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.604, -107.075] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55ff9a8ad130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fbfaa67f010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.531184477380e-01, 1.797693134862e+308, 2.4285e-01, 2.4285e-01, + 2DIAGNOSTIC, 2, -4.542730048473e-01, 1.797693134862e+308, 2.4415e-01, 1.3039e-03, + 2DIAGNOSTIC, 3, -4.549520854723e-01, 1.797693134862e+308, 2.4549e-01, 1.3440e-03, + 2DIAGNOSTIC, 4, -4.573812298165e-01, 1.797693134862e+308, 2.4683e-01, 1.3330e-03, + 2DIAGNOSTIC, 5, -4.613532315873e-01, 1.797693134862e+308, 2.4817e-01, 1.3449e-03, + 2DIAGNOSTIC, 6, -4.654104315835e-01, 1.797693134862e+308, 2.4951e-01, 1.3380e-03, + 2DIAGNOSTIC, 7, -4.721921238414e-01, 1.797693134862e+308, 2.5134e-01, 1.8330e-03, + 2DIAGNOSTIC, 8, -4.722985013588e-01, 1.797693134862e+308, 2.5280e-01, 1.4539e-03, + 2DIAGNOSTIC, 9, -4.740179465561e-01, 1.797693134862e+308, 2.5448e-01, 1.6818e-03, + 2DIAGNOSTIC, 10, -4.752966055091e-01, 3.628532128655e-03, 2.5619e-01, 1.7161e-03, + 2DIAGNOSTIC, 11, -4.851531547966e-01, 3.693945033962e-03, 2.5811e-01, 1.9181e-03, + 2DIAGNOSTIC, 12, -4.931795507464e-01, 3.862871671697e-03, 2.5982e-01, 1.7121e-03, + 2DIAGNOSTIC, 13, -4.958598757569e-01, 3.808278003280e-03, 2.6169e-01, 1.8649e-03, + 2DIAGNOSTIC, 14, -4.974652316363e-01, 3.598384526182e-03, 2.6476e-01, 3.0732e-03, + 2DIAGNOSTIC, 15, -4.996021565135e-01, 3.334707495546e-03, 2.6662e-01, 1.8620e-03, + 2DIAGNOSTIC, 16, -5.001457975221e-01, 2.959052461325e-03, 2.6824e-01, 1.6179e-03, + 2DIAGNOSTIC, 17, -5.017230632409e-01, 2.646897594488e-03, 2.7005e-01, 1.8120e-03, + 2DIAGNOSTIC, 18, -5.021896557249e-01, 2.147613794159e-03, 2.7194e-01, 1.8899e-03, + 2DIAGNOSTIC, 19, -5.021936737008e-01, 1.564408012695e-03, 2.7355e-01, 1.6031e-03, + 2DIAGNOSTIC, 20, -5.022139360544e-01, 9.310109281633e-04, 2.7513e-01, 1.5850e-03, + 2DIAGNOSTIC, 21, -5.027843832663e-01, 5.615343958930e-04, 2.7698e-01, 1.8461e-03, + 2DIAGNOSTIC, 22, -5.034523991324e-01, 4.055256989013e-04, 2.7878e-01, 1.8041e-03, + 2DIAGNOSTIC, 23, -5.059011038867e-01, 3.558463499517e-04, 2.8061e-01, 1.8241e-03, + 2DIAGNOSTIC, 24, -5.045662598730e-01, 2.819253451992e-04, 2.8264e-01, 2.0359e-03, + 2DIAGNOSTIC, 25, -5.051089530288e-01, 2.525997580444e-04, 2.8448e-01, 1.8342e-03, + 2DIAGNOSTIC, 26, -5.050393591573e-01, 2.116976379649e-04, 2.8606e-01, 1.5838e-03, + 2DIAGNOSTIC, 27, -5.053030385500e-01, 1.928665122940e-04, 2.8763e-01, 1.5700e-03, + 2DIAGNOSTIC, 28, -5.067498474645e-01, 1.965712425289e-04, 2.8947e-01, 1.8389e-03, + 2DIAGNOSTIC, 29, -5.087665434773e-01, 2.218727560201e-04, 2.9132e-01, 1.8489e-03, + 2DIAGNOSTIC, 30, -5.136576342565e-01, 3.194170628534e-04, 2.9321e-01, 1.8902e-03, + 2DIAGNOSTIC, 31, -5.354814558646e-01, 7.960204982408e-04, 2.9608e-01, 2.8689e-03, + 2DIAGNOSTIC, 32, -5.377060283826e-01, 1.205949153649e-03, 2.9854e-01, 2.4581e-03, + 2DIAGNOSTIC, 33, -5.383899271658e-01, 1.534487827075e-03, 3.0041e-01, 1.8699e-03, + 2DIAGNOSTIC, 34, -5.403834106613e-01, 1.712676009527e-03, 3.0197e-01, 1.5659e-03, + 2DIAGNOSTIC, 35, -5.428326253413e-01, 1.763701393786e-03, 3.0356e-01, 1.5862e-03, + 2DIAGNOSTIC, 36, -5.451196543486e-01, 1.673257011025e-03, 3.0514e-01, 1.5838e-03, + 2DIAGNOSTIC, 37, -5.512665524679e-01, 1.526587034913e-03, 3.0672e-01, 1.5838e-03, + 2DIAGNOSTIC, 38, -5.581841338445e-01, 1.371276404559e-03, 3.0834e-01, 1.6160e-03, + 2DIAGNOSTIC, 39, -5.633679624749e-01, 1.199140083156e-03, 3.1044e-01, 2.0981e-03, + 2DIAGNOSTIC, 40, -5.687815694085e-01, 1.059097186862e-03, 3.1293e-01, 2.4881e-03, + 2DIAGNOSTIC, 41, -5.697073710690e-01, 1.136883960316e-03, 3.1473e-01, 1.8051e-03, + 2DIAGNOSTIC, 42, -5.710385172049e-01, 1.150119670808e-03, 3.1631e-01, 1.5790e-03, + 2DIAGNOSTIC, 43, -5.712297783971e-01, 1.063396538579e-03, 3.1812e-01, 1.8108e-03, + 2DIAGNOSTIC, 44, -5.715889236452e-01, 9.089307685825e-04, 3.1969e-01, 1.5681e-03, + 2DIAGNOSTIC, 45, -5.723585410152e-01, 7.154906992494e-04, 3.2126e-01, 1.5750e-03, + 2DIAGNOSTIC, 46, -5.744022686461e-01, 5.145832746993e-04, 3.2306e-01, 1.7970e-03, + 2DIAGNOSTIC, 47, -5.752514928245e-01, 3.550408235998e-04, 3.2589e-01, 2.8269e-03, + 2DIAGNOSTIC, 48, -5.755224291547e-01, 2.508867914845e-04, 3.2747e-01, 1.5860e-03, + 2DIAGNOSTIC, 49, -5.760939174933e-01, 1.910735870537e-04, 3.2904e-01, 1.5700e-03, + 2DIAGNOSTIC, 50, -5.768863988025e-01, 1.835081056426e-04, 3.3108e-01, 2.0370e-03, + 2DIAGNOSTIC, 51, -5.772237991184e-01, 1.714604796590e-04, 3.3285e-01, 1.7669e-03, + 2DIAGNOSTIC, 52, -5.769509681074e-01, 1.546750153417e-04, 3.3440e-01, 1.5481e-03, + 2DIAGNOSTIC, 53, -5.767599809858e-01, 1.243310579818e-04, 3.3596e-01, 1.5640e-03, + 2DIAGNOSTIC, 54, -5.771067501005e-01, 9.059636826540e-05, 3.3751e-01, 1.5519e-03, + 2DIAGNOSTIC, 55, -5.775121076721e-01, 6.042986441420e-05, 3.3909e-01, 1.5781e-03, + 2DIAGNOSTIC, 56, -5.779661623404e-01, 4.960484125733e-05, 3.4091e-01, 1.8189e-03, + 2DIAGNOSTIC, 57, -5.788722558056e-01, 5.129052393817e-05, 3.4250e-01, 1.5950e-03, + 2DIAGNOSTIC, 58, -5.795532894378e-01, 5.679948410005e-05, 3.4430e-01, 1.8001e-03, + 2DIAGNOSTIC, 59, -5.812349478932e-01, 7.701285655098e-05, 3.4687e-01, 2.5630e-03, + 2DIAGNOSTIC, 60, -5.812426446584e-01, 9.586698842659e-05, 3.4847e-01, 1.6029e-03, + 2DIAGNOSTIC, 61, -5.814565779903e-01, 1.100072619461e-04, 3.5029e-01, 1.8172e-03, + 2DIAGNOSTIC, 62, -5.815845211248e-01, 1.120344208776e-04, 3.5212e-01, 1.8320e-03, + 2DIAGNOSTIC, 63, -5.812394795028e-01, 9.855194328358e-05, 3.5363e-01, 1.5080e-03, + 2DIAGNOSTIC, 64, -5.809294000071e-01, 7.635379710490e-05, 3.5544e-01, 1.8151e-03, + 2DIAGNOSTIC, 65, -5.806544581056e-01, 4.875286169531e-05, 3.5702e-01, 1.5740e-03, + 2DIAGNOSTIC, 66, -5.809803748411e-01, 2.376040501461e-05, 3.5859e-01, 1.5740e-03, + 2DIAGNOSTIC, 67, -5.810260618072e-01, 4.764349854712e-06, 3.6016e-01, 1.5719e-03, + 2DIAGNOSTIC, 68, -5.824475098745e-01, 2.101209105248e-06, 3.6273e-01, 2.5711e-03, + 2DIAGNOSTIC, 69, -5.826354554658e-01, 1.358786092094e-05, 3.6436e-01, 1.6289e-03, + 2DIAGNOSTIC, 70, -5.828150427987e-01, 2.492861855910e-05, 3.6620e-01, 1.8382e-03, + 2DIAGNOSTIC, 71, -5.842802443376e-01, 4.611946200078e-05, 3.6785e-01, 1.6470e-03, + 2DIAGNOSTIC, 72, -5.847503138902e-01, 6.635718649265e-05, 3.6999e-01, 2.1379e-03, + 2DIAGNOSTIC, 73, -5.858407735313e-01, 8.498950606050e-05, 3.7205e-01, 2.0649e-03, + 2DIAGNOSTIC, 74, -5.868096938328e-01, 9.963838355100e-05, 3.7365e-01, 1.5941e-03, + 2DIAGNOSTIC, 75, -5.870052857315e-01, 1.037314374487e-04, 3.7550e-01, 1.8508e-03, + 2DIAGNOSTIC, 76, -5.878244103656e-01, 1.057910985547e-04, 3.7737e-01, 1.8759e-03, + 2DIAGNOSTIC, 77, -5.874393058558e-01, 9.491793789575e-05, 3.7924e-01, 1.8711e-03, + 2DIAGNOSTIC, 78, -5.871069365212e-01, 8.271428043478e-05, 3.8085e-01, 1.6038e-03, + 2DIAGNOSTIC, 79, -5.871853182148e-01, 6.479252436382e-05, 3.8268e-01, 1.8380e-03, + 2DIAGNOSTIC, 80, -5.872380037982e-01, 4.239921588969e-05, 3.8430e-01, 1.6110e-03, + 2DIAGNOSTIC, 81, -5.873655816737e-01, 2.683061780896e-05, 3.8606e-01, 1.7631e-03, + 2DIAGNOSTIC, 82, -5.884274100181e-01, 1.881280318394e-05, 3.8763e-01, 1.5759e-03, + 2DIAGNOSTIC, 83, -5.880278225677e-01, 1.337018514638e-05, 3.9037e-01, 2.7380e-03, + 2DIAGNOSTIC, 84, -5.880393642982e-01, 1.306149131557e-05, 3.9218e-01, 1.8110e-03, + 2DIAGNOSTIC, 85, -5.880748613263e-01, 1.281566518111e-05, 3.9402e-01, 1.8361e-03, + 2DIAGNOSTIC, 86, -5.881070605841e-01, 1.650427684913e-05, 3.9553e-01, 1.5090e-03, + 2DIAGNOSTIC, 87, -5.876780100619e-01, 1.363732346715e-05, 3.9710e-01, 1.5750e-03, + 2DIAGNOSTIC, 88, -5.877088755913e-01, 7.875128258337e-06, 3.9893e-01, 1.8220e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.687264557775e-01, 1.797693134862e+308, 6.3802e-01, 2.3910e-01, + 2DIAGNOSTIC, 2, -4.682114567315e-01, 1.797693134862e+308, 6.4016e-01, 2.1431e-03, + 2DIAGNOSTIC, 3, -4.698191168017e-01, 1.797693134862e+308, 6.4225e-01, 2.0871e-03, + 2DIAGNOSTIC, 4, -4.718938457240e-01, 1.797693134862e+308, 6.4436e-01, 2.1081e-03, + 2DIAGNOSTIC, 5, -4.748218255258e-01, 1.797693134862e+308, 6.4683e-01, 2.4719e-03, + 2DIAGNOSTIC, 6, -4.768385517325e-01, 1.797693134862e+308, 6.4898e-01, 2.1451e-03, + 2DIAGNOSTIC, 7, -4.797982386242e-01, 1.797693134862e+308, 6.5113e-01, 2.1510e-03, + 2DIAGNOSTIC, 8, -4.888570452936e-01, 1.797693134862e+308, 6.5396e-01, 2.8369e-03, + 2DIAGNOSTIC, 9, -4.997438275058e-01, 1.797693134862e+308, 6.5643e-01, 2.4672e-03, + 2DIAGNOSTIC, 10, -5.029662772459e-01, 4.689609523174e-03, 6.5880e-01, 2.3649e-03, + 2DIAGNOSTIC, 11, -5.077068547031e-01, 5.090824210166e-03, 6.6144e-01, 2.6419e-03, + 2DIAGNOSTIC, 12, -5.140585468524e-01, 5.247966401484e-03, 6.6409e-01, 2.6519e-03, + 2DIAGNOSTIC, 13, -5.198778159174e-01, 5.224401115755e-03, 6.6675e-01, 2.6560e-03, + 2DIAGNOSTIC, 14, -5.241447757749e-01, 4.981320674643e-03, 6.6938e-01, 2.6309e-03, + 2DIAGNOSTIC, 15, -5.285651337399e-01, 4.602484362036e-03, 6.7164e-01, 2.2669e-03, + 2DIAGNOSTIC, 16, -5.294261600592e-01, 3.960794214706e-03, 6.7423e-01, 2.5828e-03, + 2DIAGNOSTIC, 17, -5.295327229600e-01, 3.135335025872e-03, 6.7712e-01, 2.8889e-03, + 2DIAGNOSTIC, 18, -5.303979678142e-01, 2.424389565253e-03, 6.7969e-01, 2.5709e-03, + 2DIAGNOSTIC, 19, -5.309042057942e-01, 1.907583181950e-03, 6.8226e-01, 2.5759e-03, + 2DIAGNOSTIC, 20, -5.320043963670e-01, 1.389236107986e-03, 6.8487e-01, 2.6031e-03, + 2DIAGNOSTIC, 21, -5.326282128433e-01, 9.358720068108e-04, 6.8718e-01, 2.3141e-03, + 2DIAGNOSTIC, 22, -5.352775731099e-01, 6.677551380451e-04, 6.8977e-01, 2.5871e-03, + 2DIAGNOSTIC, 23, -5.372366449796e-01, 5.487578256939e-04, 6.9207e-01, 2.3000e-03, + 2DIAGNOSTIC, 24, -5.445493278494e-01, 6.552688643787e-04, 6.9614e-01, 4.0770e-03, + 2DIAGNOSTIC, 25, -5.467785664279e-01, 8.357258785327e-04, 6.9881e-01, 2.6689e-03, + 2DIAGNOSTIC, 26, -5.468665995979e-01, 9.443764940436e-04, 7.0142e-01, 2.6050e-03, + 2DIAGNOSTIC, 27, -5.472040825556e-01, 9.667486057720e-04, 7.0380e-01, 2.3849e-03, + 2DIAGNOSTIC, 28, -5.478564702372e-01, 9.258413312806e-04, 7.0609e-01, 2.2829e-03, + 2DIAGNOSTIC, 29, -5.482987498916e-01, 8.163040147990e-04, 7.0857e-01, 2.4831e-03, + 2DIAGNOSTIC, 30, -5.489747497610e-01, 6.698458165229e-04, 7.1076e-01, 2.1889e-03, + 2DIAGNOSTIC, 31, -5.494856670101e-01, 4.912738909213e-04, 7.1294e-01, 2.1830e-03, + 2DIAGNOSTIC, 32, -5.507678234308e-01, 3.465696241983e-04, 7.1545e-01, 2.5089e-03, + 2DIAGNOSTIC, 33, -5.509336865702e-01, 2.101371008910e-04, 7.1766e-01, 2.2080e-03, + 2DIAGNOSTIC, 34, -5.534302563040e-01, 2.191699250017e-04, 7.1987e-01, 2.2140e-03, + 2DIAGNOSTIC, 35, -5.556174335184e-01, 2.749350642822e-04, 7.2302e-01, 3.1459e-03, + 2DIAGNOSTIC, 36, -5.567493702904e-01, 3.192105784381e-04, 7.2518e-01, 2.1651e-03, + 2DIAGNOSTIC, 37, -5.587516885311e-01, 3.651364224334e-04, 7.2738e-01, 2.1930e-03, + 2DIAGNOSTIC, 38, -5.629731361805e-01, 4.430028820418e-04, 7.2986e-01, 2.4822e-03, + 2DIAGNOSTIC, 39, -5.632205725490e-01, 4.824111426022e-04, 7.3240e-01, 2.5389e-03, + 2DIAGNOSTIC, 40, -5.679946626303e-01, 5.477270234176e-04, 7.3495e-01, 2.5570e-03, + 2DIAGNOSTIC, 41, -5.693854319986e-01, 5.812515970756e-04, 7.3714e-01, 2.1870e-03, + 2DIAGNOSTIC, 42, -5.813632278656e-01, 7.275227333967e-04, 7.3967e-01, 2.5332e-03, + 2DIAGNOSTIC, 43, -5.861486724041e-01, 8.542167260073e-04, 7.4220e-01, 2.5249e-03, + 2DIAGNOSTIC, 44, -5.879520331120e-01, 9.450811425834e-04, 7.4451e-01, 2.3141e-03, + 2DIAGNOSTIC, 45, -5.951744908355e-01, 1.054727782349e-03, 7.4722e-01, 2.7111e-03, + 2DIAGNOSTIC, 46, -6.066542505245e-01, 1.201524501209e-03, 7.4999e-01, 2.7699e-03, + 2DIAGNOSTIC, 47, -6.196875643441e-01, 1.390175347322e-03, 7.5336e-01, 3.3681e-03, + 2DIAGNOSTIC, 48, -6.358003745215e-01, 1.657973720420e-03, 7.5564e-01, 2.2769e-03, + 2DIAGNOSTIC, 49, -6.455562721823e-01, 1.860152825428e-03, 7.5817e-01, 2.5280e-03, + 2DIAGNOSTIC, 50, -6.461934010110e-01, 1.933256477134e-03, 7.6065e-01, 2.4860e-03, + 2DIAGNOSTIC, 51, -6.480820224524e-01, 1.850077002082e-03, 7.6313e-01, 2.4750e-03, + 2DIAGNOSTIC, 52, -6.489303706447e-01, 1.720031319572e-03, 7.6528e-01, 2.1470e-03, + 2DIAGNOSTIC, 53, -6.529771099256e-01, 1.516264615121e-03, 7.6774e-01, 2.4691e-03, + 2DIAGNOSTIC, 54, -6.538399945430e-01, 1.200398981281e-03, 7.7017e-01, 2.4250e-03, + 2DIAGNOSTIC, 55, -6.546754874197e-01, 8.593419447054e-04, 7.7259e-01, 2.4171e-03, + 2DIAGNOSTIC, 56, -6.549910159238e-01, 5.583951535185e-04, 7.7642e-01, 3.8321e-03, + 2DIAGNOSTIC, 57, -6.549332540571e-01, 3.296188762872e-04, 7.7890e-01, 2.4781e-03, + 2DIAGNOSTIC, 58, -6.553848669991e-01, 2.214888759172e-04, 7.8165e-01, 2.7540e-03, + 2DIAGNOSTIC, 59, -6.554816289485e-01, 1.811182689145e-04, 7.8448e-01, 2.8279e-03, + 2DIAGNOSTIC, 60, -6.553910533244e-01, 1.296687083187e-04, 7.8687e-01, 2.3870e-03, + 2DIAGNOSTIC, 61, -6.553880002185e-01, 8.376102779316e-05, 7.8931e-01, 2.4431e-03, + 2DIAGNOSTIC, 62, -6.555742323649e-01, 3.924114789842e-05, 7.9169e-01, 2.3839e-03, + 2DIAGNOSTIC, 63, -6.554771776696e-01, 2.396309836070e-05, 7.9406e-01, 2.3720e-03, + 2DIAGNOSTIC, 64, -6.553875522414e-01, 1.289876481857e-05, 7.9618e-01, 2.1138e-03, + 2DIAGNOSTIC, 65, -6.559124581243e-01, 1.153418700954e-05, 7.9855e-01, 2.3730e-03, + 2DIAGNOSTIC, 66, -6.563853538064e-01, 1.505243975565e-05, 8.0062e-01, 2.0700e-03, + 2DIAGNOSTIC, 67, -6.567884490956e-01, 1.943819345028e-05, 8.0328e-01, 2.6631e-03, + 2DIAGNOSTIC, 68, -6.569588946679e-01, 2.640321540872e-05, 8.0559e-01, 2.3091e-03, + 2DIAGNOSTIC, 69, -6.567265983577e-01, 2.977024718202e-05, 8.0765e-01, 2.0561e-03, + 2DIAGNOSTIC, 70, -6.565291369229e-01, 2.821910939629e-05, 8.0972e-01, 2.0680e-03, + 2DIAGNOSTIC, 71, -6.566708363115e-01, 2.491958548636e-05, 8.1237e-01, 2.6519e-03, + 2DIAGNOSTIC, 72, -6.570982434408e-01, 2.351022173775e-05, 8.1470e-01, 2.3298e-03, + 2DIAGNOSTIC, 73, -6.569657785513e-01, 1.837917911860e-05, 8.1674e-01, 2.0359e-03, + 2DIAGNOSTIC, 74, -6.570135224543e-01, 1.148798550891e-05, 8.1936e-01, 2.6278e-03, + 2DIAGNOSTIC, 75, -6.572205856764e-01, 8.537974879607e-06, 8.2170e-01, 2.3401e-03, + 2DIAGNOSTIC, 76, -6.570912791963e-01, 6.955604651845e-06, 8.2379e-01, 2.0840e-03, + 2DIAGNOSTIC, 77, -6.569771158620e-01, 6.556046502489e-06, 8.2623e-01, 2.4471e-03, + 2DIAGNOSTIC, 78, -6.572563481835e-01, 8.466707366043e-06, 8.2891e-01, 2.6779e-03, + 2DIAGNOSTIC, 79, -6.574623437363e-01, 9.399779043132e-06, 8.3120e-01, 2.2860e-03, + 2DIAGNOSTIC, 80, -6.575429159328e-01, 8.681346987886e-06, 8.3345e-01, 2.2550e-03, + 2DIAGNOSTIC, 81, -6.579795945158e-01, 1.061340981088e-05, 8.3592e-01, 2.4691e-03, + 2DIAGNOSTIC, 82, -6.577912587701e-01, 1.292921782514e-05, 8.3842e-01, 2.4991e-03, + 2DIAGNOSTIC, 83, -6.578743381973e-01, 1.372355637764e-05, 8.4121e-01, 2.7852e-03, + 2DIAGNOSTIC, 84, -6.576281760200e-01, 1.200547738933e-05, 8.4613e-01, 4.9241e-03, + 2DIAGNOSTIC, 85, -6.577854617929e-01, 1.132781658946e-05, 8.4875e-01, 2.6238e-03, + 2DIAGNOSTIC, 86, -6.576274664632e-01, 7.988079072678e-06, 8.5106e-01, 2.3079e-03, + 2DIAGNOSTIC, 87, -6.574717988710e-01, 2.507021115299e-06, 8.5334e-01, 2.2781e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.112569572549e-01, 1.797693134862e+308, 1.1260e+00, 2.7269e-01, + 2DIAGNOSTIC, 2, -5.115502028160e-01, 1.797693134862e+308, 1.1393e+00, 1.3219e-02, + 2DIAGNOSTIC, 3, -5.117854376711e-01, 1.797693134862e+308, 1.1530e+00, 1.3752e-02, + 2DIAGNOSTIC, 4, -5.123121751664e-01, 1.797693134862e+308, 1.1667e+00, 1.3702e-02, + 2DIAGNOSTIC, 5, -5.127017962806e-01, 1.797693134862e+308, 1.1808e+00, 1.4065e-02, + 2DIAGNOSTIC, 6, -5.133267406607e-01, 1.797693134862e+308, 1.1976e+00, 1.6786e-02, + 2DIAGNOSTIC, 7, -5.144334726200e-01, 1.797693134862e+308, 1.2200e+00, 2.2478e-02, + 2DIAGNOSTIC, 8, -5.145472118180e-01, 1.797693134862e+308, 1.2335e+00, 1.3469e-02, + 2DIAGNOSTIC, 9, -5.153209318032e-01, 1.797693134862e+308, 1.2469e+00, 1.3416e-02, + 2DIAGNOSTIC, 10, -5.178178250925e-01, 7.164636897322e-04, 1.2618e+00, 1.4875e-02, + 2DIAGNOSTIC, 11, -5.182808565395e-01, 7.648943308562e-04, 1.2787e+00, 1.6936e-02, + 2DIAGNOSTIC, 12, -5.182725723104e-01, 7.506828776473e-04, 1.2910e+00, 1.2284e-02, + 2DIAGNOSTIC, 13, -5.186039964916e-01, 6.967977182163e-04, 1.3050e+00, 1.3987e-02, + 2DIAGNOSTIC, 14, -5.186460380781e-01, 6.096417829453e-04, 1.3189e+00, 1.3945e-02, + 2DIAGNOSTIC, 15, -5.188763000757e-01, 4.998250701490e-04, 1.3329e+00, 1.3926e-02, + 2DIAGNOSTIC, 16, -5.194385296954e-01, 3.978690735782e-04, 1.3468e+00, 1.3960e-02, + 2DIAGNOSTIC, 17, -5.198342693355e-01, 3.212778522509e-04, 1.3631e+00, 1.6309e-02, + 2DIAGNOSTIC, 18, -5.198551597363e-01, 2.281621482027e-04, 1.3756e+00, 1.2409e-02, + 2DIAGNOSTIC, 19, -5.203960994232e-01, 1.604267556848e-04, 1.3900e+00, 1.4496e-02, + 2DIAGNOSTIC, 20, -5.204734595800e-01, 1.549831020524e-04, 1.4050e+00, 1.4931e-02, + 2DIAGNOSTIC, 21, -5.205406605478e-01, 1.496094940904e-04, 1.4194e+00, 1.4471e-02, + 2DIAGNOSTIC, 22, -5.206625095050e-01, 1.335867435268e-04, 1.4356e+00, 1.6174e-02, + 2DIAGNOSTIC, 23, -5.207176838783e-01, 1.159798724142e-04, 1.4498e+00, 1.4141e-02, + 2DIAGNOSTIC, 24, -5.206808153816e-01, 8.918822872921e-05, 1.4626e+00, 1.2801e-02, + 2DIAGNOSTIC, 25, -5.208449076796e-01, 6.473373245998e-05, 1.4788e+00, 1.6189e-02, + 2DIAGNOSTIC, 26, -5.208620928579e-01, 4.827085859455e-05, 1.4943e+00, 1.5516e-02, + 2DIAGNOSTIC, 27, -5.208603859360e-01, 3.673334499714e-05, 1.5081e+00, 1.3812e-02, + 2DIAGNOSTIC, 28, -5.208684695862e-01, 2.300958188889e-05, 1.5202e+00, 1.2071e-02, + 2DIAGNOSTIC, 29, -5.208764414907e-01, 1.857123105874e-05, 1.5344e+00, 1.4217e-02, + 2DIAGNOSTIC, 30, -5.208900089510e-01, 1.439851788083e-05, 1.5485e+00, 1.4151e-02, + 2DIAGNOSTIC, 31, -5.209360542982e-01, 1.115974856929e-05, 1.5628e+00, 1.4257e-02, + 2DIAGNOSTIC, 32, -5.209276958084e-01, 9.103208140245e-06, 1.5768e+00, 1.4012e-02, + 2DIAGNOSTIC, 33, -5.209203018854e-01, 7.267024164544e-06, 1.5891e+00, 1.2316e-02, + 2DIAGNOSTIC, 34, -5.209474561605e-01, 4.722262144097e-06, 1.6032e+00, 1.4115e-02, + 2DIAGNOSTIC, 35, -5.209579102178e-01, 4.670604844000e-06, 1.6172e+00, 1.4014e-02, + 2DIAGNOSTIC, 36, -5.209504732450e-01, 4.403741251543e-06, 1.6317e+00, 1.4454e-02, + 2DIAGNOSTIC, 37, -5.209411966555e-01, 3.666868911463e-06, 1.6500e+00, 1.8347e-02, + 2DIAGNOSTIC, 38, -5.209296417506e-01, 2.667637704241e-06, 1.6650e+00, 1.4946e-02, + 2DIAGNOSTIC, 39, -5.209028569897e-01, 1.276644500538e-06, 1.6776e+00, 1.2664e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.384694279359e-01, 1.797693134862e+308, 2.0930e+00, 4.1533e-01, + 2DIAGNOSTIC, 2, -4.387562712201e-01, 1.797693134862e+308, 2.1817e+00, 8.8683e-02, + 2DIAGNOSTIC, 3, -4.391185463940e-01, 1.797693134862e+308, 2.2712e+00, 8.9568e-02, + 2DIAGNOSTIC, 4, -4.394768685477e-01, 1.797693134862e+308, 2.3611e+00, 8.9904e-02, + 2DIAGNOSTIC, 5, -4.399816031986e-01, 1.797693134862e+308, 2.4492e+00, 8.8090e-02, + 2DIAGNOSTIC, 6, -4.409377660844e-01, 1.797693134862e+308, 2.5496e+00, 1.0042e-01, + 2DIAGNOSTIC, 7, -4.417866145125e-01, 1.797693134862e+308, 2.6744e+00, 1.2474e-01, + 2DIAGNOSTIC, 8, -4.418524295780e-01, 1.797693134862e+308, 2.7649e+00, 9.0553e-02, + 2DIAGNOSTIC, 9, -4.419218031523e-01, 1.797693134862e+308, 2.8487e+00, 8.3781e-02, + 2DIAGNOSTIC, 10, -4.421409165528e-01, 6.221777763956e-04, 2.9327e+00, 8.3973e-02, + 2DIAGNOSTIC, 11, -4.422767972308e-01, 5.242678489528e-04, 3.0412e+00, 1.0854e-01, + 2DIAGNOSTIC, 12, -4.423733790909e-01, 4.157299720154e-04, 3.1566e+00, 1.1534e-01, + 2DIAGNOSTIC, 13, -4.424041472410e-01, 3.066096820115e-04, 3.2372e+00, 8.0636e-02, + 2DIAGNOSTIC, 14, -4.424933016950e-01, 2.066183211878e-04, 3.3247e+00, 8.7490e-02, + 2DIAGNOSTIC, 15, -4.425273363198e-01, 1.235825515738e-04, 3.4084e+00, 8.3667e-02, + 2DIAGNOSTIC, 16, -4.425383393335e-01, 7.774354838595e-05, 3.5113e+00, 1.0289e-01, + 2DIAGNOSTIC, 17, -4.425766738054e-01, 6.402132926540e-05, 3.6007e+00, 8.9412e-02, + 2DIAGNOSTIC, 18, -4.426301815729e-01, 5.040087340633e-05, 3.6986e+00, 9.7931e-02, + 2DIAGNOSTIC, 19, -4.427639873270e-01, 4.040350051449e-05, 3.7965e+00, 9.7863e-02, + 2DIAGNOSTIC, 20, -4.428257854297e-01, 3.666767562159e-05, 3.8946e+00, 9.8148e-02, + 2DIAGNOSTIC, 21, -4.428848860651e-01, 3.597674920110e-05, 3.9839e+00, 8.9270e-02, + 2DIAGNOSTIC, 22, -4.429739252175e-01, 3.759345628194e-05, 4.0946e+00, 1.1075e-01, + 2DIAGNOSTIC, 23, -4.430476268499e-01, 3.848878605181e-05, 4.1903e+00, 9.5707e-02, + 2DIAGNOSTIC, 24, -4.430535849025e-01, 3.830164605093e-05, 4.2917e+00, 1.0134e-01, + 2DIAGNOSTIC, 25, -4.430560621385e-01, 3.563418616933e-05, 4.3888e+00, 9.7158e-02, + 2DIAGNOSTIC, 26, -4.430668604603e-01, 3.051445120540e-05, 4.4870e+00, 9.8131e-02, + 2DIAGNOSTIC, 27, -4.430660669691e-01, 2.388472708052e-05, 4.6026e+00, 1.1562e-01, + 2DIAGNOSTIC, 28, -4.430688764203e-01, 1.680083916339e-05, 4.7059e+00, 1.0334e-01, + 2DIAGNOSTIC, 29, -4.430697933582e-01, 1.171710625537e-05, 4.8175e+00, 1.1154e-01, + 2DIAGNOSTIC, 30, -4.430686160866e-01, 7.278647615204e-06, 4.9137e+00, 9.6183e-02, + 2DIAGNOSTIC, 31, -4.430673748291e-01, 3.704344626897e-06, 4.9978e+00, 8.4168e-02, + 2DIAGNOSTIC, 32, -4.430662491493e-01, 1.826402379668e-06, 5.0926e+00, 9.4799e-02, + 2DIAGNOSTIC, 33, -4.430665181759e-01, 1.424498757480e-06, 5.1878e+00, 9.5182e-02, + 2DIAGNOSTIC, 34, -4.430653822201e-01, 1.093614824619e-06, 5.2744e+00, 8.6552e-02, + Elapsed time (stage 0): 5.4195e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.129755253401e-01, 1.797693134862e+308, 2.0883e-01, 2.0882e-01, + 2DIAGNOSTIC, 2, -7.149970991871e-01, 1.797693134862e+308, 2.1013e-01, 1.3011e-03, + 2DIAGNOSTIC, 3, -7.179268418379e-01, 1.797693134862e+308, 2.1138e-01, 1.2569e-03, + 2DIAGNOSTIC, 4, -7.228329699580e-01, 1.797693134862e+308, 2.1267e-01, 1.2848e-03, + 2DIAGNOSTIC, 5, -7.318408719558e-01, 1.797693134862e+308, 2.1400e-01, 1.3289e-03, + 2DIAGNOSTIC, 6, -7.455662652656e-01, 1.797693134862e+308, 2.1525e-01, 1.2572e-03, + 2DIAGNOSTIC, 7, -7.789503427708e-01, 1.797693134862e+308, 2.1680e-01, 1.5440e-03, + 2DIAGNOSTIC, 8, -7.960021650986e-01, 1.797693134862e+308, 2.1804e-01, 1.2431e-03, + 2DIAGNOSTIC, 9, -8.086000392505e-01, 1.797693134862e+308, 2.1959e-01, 1.5481e-03, + 2DIAGNOSTIC, 10, -8.277445107892e-01, 1.052639904547e-02, 2.2204e-01, 2.4531e-03, + 2DIAGNOSTIC, 11, -8.338135848702e-01, 1.051749296973e-02, 2.2350e-01, 1.4620e-03, + 2DIAGNOSTIC, 12, -8.361295443549e-01, 9.696813006628e-03, 2.2552e-01, 2.0199e-03, + 2DIAGNOSTIC, 13, -8.374515072492e-01, 8.263475572061e-03, 2.2728e-01, 1.7571e-03, + 2DIAGNOSTIC, 14, -8.370042384825e-01, 6.425878792668e-03, 2.2895e-01, 1.6720e-03, + 2DIAGNOSTIC, 15, -8.373922324511e-01, 4.493198314884e-03, 2.3062e-01, 1.6670e-03, + 2DIAGNOSTIC, 16, -8.377248747095e-01, 2.709099731624e-03, 2.3234e-01, 1.7202e-03, + 2DIAGNOSTIC, 17, -8.375937706845e-01, 1.601910889122e-03, 2.3380e-01, 1.4629e-03, + 2DIAGNOSTIC, 18, -8.374760265561e-01, 8.143285905986e-04, 2.3527e-01, 1.4699e-03, + 2DIAGNOSTIC, 19, -8.373596689529e-01, 2.661047712293e-04, 2.3707e-01, 1.7991e-03, + 2DIAGNOSTIC, 20, -8.372237002519e-01, 8.789925479129e-05, 2.3885e-01, 1.7741e-03, + 2DIAGNOSTIC, 21, -8.371387703957e-01, 1.985337171402e-05, 2.4057e-01, 1.7231e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.155178112263e-01, 1.797693134862e+308, 4.5463e-01, 2.1406e-01, + 2DIAGNOSTIC, 2, -7.148232357537e-01, 1.797693134862e+308, 4.5725e-01, 2.6138e-03, + 2DIAGNOSTIC, 3, -7.159130338629e-01, 1.797693134862e+308, 4.5970e-01, 2.4519e-03, + 2DIAGNOSTIC, 4, -7.176312473516e-01, 1.797693134862e+308, 4.6243e-01, 2.7361e-03, + 2DIAGNOSTIC, 5, -7.200345589728e-01, 1.797693134862e+308, 4.6551e-01, 3.0758e-03, + 2DIAGNOSTIC, 6, -7.201931341386e-01, 1.797693134862e+308, 4.6778e-01, 2.2740e-03, + 2DIAGNOSTIC, 7, -7.202433933550e-01, 1.797693134862e+308, 4.7008e-01, 2.2981e-03, + 2DIAGNOSTIC, 8, -7.201320599291e-01, 1.797693134862e+308, 4.7250e-01, 2.4202e-03, + 2DIAGNOSTIC, 9, -7.199728652826e-01, 1.797693134862e+308, 4.7493e-01, 2.4300e-03, + 2DIAGNOSTIC, 10, -7.200243117890e-01, 5.258794918782e-04, 4.7764e-01, 2.7099e-03, + 2DIAGNOSTIC, 11, -7.199955256673e-01, 3.790601199866e-04, 4.7991e-01, 2.2671e-03, + 2DIAGNOSTIC, 12, -7.198766387159e-01, 1.971007399824e-04, 4.8214e-01, 2.2302e-03, + 2DIAGNOSTIC, 13, -7.201935024114e-01, 6.805405654385e-05, 4.8465e-01, 2.5129e-03, + 2DIAGNOSTIC, 14, -7.205772569516e-01, 8.776105261607e-06, 4.8687e-01, 2.2180e-03, + 2DIAGNOSTIC, 15, -7.208156417065e-01, 2.603938665557e-05, 4.8908e-01, 2.2120e-03, + 2DIAGNOSTIC, 16, -7.208691704773e-01, 4.414446967300e-05, 4.9164e-01, 2.5589e-03, + 2DIAGNOSTIC, 17, -7.211582851423e-01, 6.436809773110e-05, 4.9415e-01, 2.5089e-03, + 2DIAGNOSTIC, 18, -7.211274300100e-01, 7.332854153383e-05, 4.9669e-01, 2.5380e-03, + 2DIAGNOSTIC, 19, -7.208017159395e-01, 6.448647784722e-05, 4.9923e-01, 2.5442e-03, + 2DIAGNOSTIC, 20, -7.205386401625e-01, 4.676359189437e-05, 5.0208e-01, 2.8441e-03, + 2DIAGNOSTIC, 21, -7.202880631384e-01, 2.152709428811e-05, 5.0552e-01, 3.4449e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.821690242196e-01, 1.797693134862e+308, 7.4653e-01, 2.4101e-01, + 2DIAGNOSTIC, 2, -5.831449997550e-01, 1.797693134862e+308, 7.5968e-01, 1.3158e-02, + 2DIAGNOSTIC, 3, -5.845309744080e-01, 1.797693134862e+308, 7.7272e-01, 1.3036e-02, + 2DIAGNOSTIC, 4, -5.861409485777e-01, 1.797693134862e+308, 7.8702e-01, 1.4302e-02, + 2DIAGNOSTIC, 5, -5.879145910176e-01, 1.797693134862e+308, 8.0014e-01, 1.3113e-02, + 2DIAGNOSTIC, 6, -5.893879380118e-01, 1.797693134862e+308, 8.1718e-01, 1.7040e-02, + 2DIAGNOSTIC, 7, -5.910523191418e-01, 1.797693134862e+308, 8.3332e-01, 1.6149e-02, + 2DIAGNOSTIC, 8, -5.916480596923e-01, 1.797693134862e+308, 8.4675e-01, 1.3428e-02, + 2DIAGNOSTIC, 9, -5.920381939055e-01, 1.797693134862e+308, 8.6560e-01, 1.8849e-02, + 2DIAGNOSTIC, 10, -5.923626673830e-01, 1.235454484425e-03, 8.7785e-01, 1.2252e-02, + 2DIAGNOSTIC, 11, -5.928682245263e-01, 1.000580757643e-03, 8.9036e-01, 1.2503e-02, + 2DIAGNOSTIC, 12, -5.934295252583e-01, 7.762247199661e-04, 9.0573e-01, 1.5371e-02, + 2DIAGNOSTIC, 13, -5.944960794590e-01, 6.068747508799e-04, 9.2719e-01, 2.1467e-02, + 2DIAGNOSTIC, 14, -5.948600213145e-01, 4.738999383540e-04, 9.4051e-01, 1.3315e-02, + 2DIAGNOSTIC, 15, -5.951951148806e-01, 3.831551107074e-04, 9.5357e-01, 1.3063e-02, + 2DIAGNOSTIC, 16, -5.956066223014e-01, 3.245995602714e-04, 9.6701e-01, 1.3442e-02, + 2DIAGNOSTIC, 17, -5.959372639705e-01, 2.990701543204e-04, 9.8411e-01, 1.7092e-02, + 2DIAGNOSTIC, 18, -5.961066219024e-01, 2.688730934911e-04, 9.9727e-01, 1.3162e-02, + 2DIAGNOSTIC, 19, -5.965664507117e-01, 2.386417517483e-04, 1.0145e+00, 1.7279e-02, + 2DIAGNOSTIC, 20, -5.970551265479e-01, 2.088617999977e-04, 1.0396e+00, 2.5052e-02, + 2DIAGNOSTIC, 21, -5.970970863293e-01, 1.748782930681e-04, 1.0536e+00, 1.3975e-02, + 2DIAGNOSTIC, 22, -5.972813514666e-01, 1.437392215710e-04, 1.0667e+00, 1.3091e-02, + 2DIAGNOSTIC, 23, -5.975261690505e-01, 1.293286069832e-04, 1.0804e+00, 1.3710e-02, + 2DIAGNOSTIC, 24, -5.976550723774e-01, 1.137171088729e-04, 1.0956e+00, 1.5192e-02, + 2DIAGNOSTIC, 25, -5.977062544034e-01, 9.597541217917e-05, 1.1108e+00, 1.5192e-02, + 2DIAGNOSTIC, 26, -5.976834398173e-01, 7.788801538237e-05, 1.1262e+00, 1.5419e-02, + 2DIAGNOSTIC, 27, -5.976878230379e-01, 6.001705406540e-05, 1.1414e+00, 1.5232e-02, + 2DIAGNOSTIC, 28, -5.976675064454e-01, 4.023793963671e-05, 1.1567e+00, 1.5249e-02, + 2DIAGNOSTIC, 29, -5.976448636098e-01, 2.513764407763e-05, 1.1707e+00, 1.4014e-02, + 2DIAGNOSTIC, 30, -5.976601385604e-01, 1.688924002090e-05, 1.1859e+00, 1.5244e-02, + 2DIAGNOSTIC, 31, -5.976694595608e-01, 8.454087275761e-06, 1.1994e+00, 1.3434e-02, + 2DIAGNOSTIC, 32, -5.976683558363e-01, 2.511042603147e-06, 1.2153e+00, 1.5974e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.017929523473e-01, 1.797693134862e+308, 1.6431e+00, 4.2779e-01, + 2DIAGNOSTIC, 2, -5.020188697749e-01, 1.797693134862e+308, 1.7270e+00, 8.3905e-02, + 2DIAGNOSTIC, 3, -5.021603546902e-01, 1.797693134862e+308, 1.8125e+00, 8.5476e-02, + 2DIAGNOSTIC, 4, -5.022235012121e-01, 1.797693134862e+308, 1.9106e+00, 9.8129e-02, + 2DIAGNOSTIC, 5, -5.022817505715e-01, 1.797693134862e+308, 2.0209e+00, 1.1029e-01, + 2DIAGNOSTIC, 6, -5.023037720519e-01, 1.797693134862e+308, 2.1178e+00, 9.6838e-02, + 2DIAGNOSTIC, 7, -5.023048022512e-01, 1.797693134862e+308, 2.2132e+00, 9.5394e-02, + 2DIAGNOSTIC, 8, -5.023368047904e-01, 1.797693134862e+308, 2.3070e+00, 9.3811e-02, + 2DIAGNOSTIC, 9, -5.023528640995e-01, 1.797693134862e+308, 2.4018e+00, 9.4798e-02, + 2DIAGNOSTIC, 10, -5.024633838574e-01, 6.699714353821e-05, 2.5011e+00, 9.9320e-02, + 2DIAGNOSTIC, 11, -5.028172587214e-01, 6.358068030338e-05, 2.6320e+00, 1.3091e-01, + 2DIAGNOSTIC, 12, -5.030594276007e-01, 7.683655549293e-05, 2.7733e+00, 1.4135e-01, + 2DIAGNOSTIC, 13, -5.032333819709e-01, 9.498041063016e-05, 2.8752e+00, 1.0181e-01, + 2DIAGNOSTIC, 14, -5.034062678987e-01, 1.117191965486e-04, 2.9728e+00, 9.7625e-02, + 2DIAGNOSTIC, 15, -5.040579250056e-01, 1.428989849585e-04, 3.1110e+00, 1.3818e-01, + 2DIAGNOSTIC, 16, -5.042578751052e-01, 1.643824393384e-04, 3.2058e+00, 9.4885e-02, + 2DIAGNOSTIC, 17, -5.043329801810e-01, 1.709124966963e-04, 3.3018e+00, 9.5943e-02, + 2DIAGNOSTIC, 18, -5.044774938987e-01, 1.670503898805e-04, 3.3998e+00, 9.7973e-02, + 2DIAGNOSTIC, 19, -5.052109964224e-01, 1.705328752897e-04, 3.5054e+00, 1.0569e-01, + 2DIAGNOSTIC, 20, -5.053294411409e-01, 1.634607703186e-04, 3.6400e+00, 1.3451e-01, + 2DIAGNOSTIC, 21, -5.054398833719e-01, 1.544660604904e-04, 3.7245e+00, 8.4556e-02, + 2DIAGNOSTIC, 22, -5.054973711367e-01, 1.401001210413e-04, 3.8158e+00, 9.1289e-02, + 2DIAGNOSTIC, 23, -5.056951403402e-01, 1.231968662294e-04, 3.9148e+00, 9.8970e-02, + 2DIAGNOSTIC, 24, -5.057513176407e-01, 1.009361607036e-04, 4.0652e+00, 1.5044e-01, + 2DIAGNOSTIC, 25, -5.057552675661e-01, 8.577758965540e-05, 4.1630e+00, 9.7804e-02, + 2DIAGNOSTIC, 26, -5.057600188902e-01, 6.856404247176e-05, 4.2620e+00, 9.8936e-02, + 2DIAGNOSTIC, 27, -5.057688692051e-01, 4.815456247837e-05, 4.3473e+00, 8.5330e-02, + 2DIAGNOSTIC, 28, -5.057763885898e-01, 2.740417501473e-05, 4.4474e+00, 1.0010e-01, + 2DIAGNOSTIC, 29, -5.057833163152e-01, 1.995442169832e-05, 4.5592e+00, 1.1184e-01, + 2DIAGNOSTIC, 30, -5.057826909464e-01, 1.344461725928e-05, 4.6433e+00, 8.4038e-02, + 2DIAGNOSTIC, 31, -5.057810556623e-01, 8.195358407737e-06, 4.7405e+00, 9.7220e-02, + 2DIAGNOSTIC, 32, -5.057898883906e-01, 3.677196457330e-06, 4.8393e+00, 9.8868e-02, + 2DIAGNOSTIC, 33, -5.057864396606e-01, 2.465834959817e-06, 4.9412e+00, 1.0181e-01, + 2DIAGNOSTIC, 34, -5.057841125375e-01, 2.078529961751e-06, 5.0340e+00, 9.2888e-02, + 2DIAGNOSTIC, 35, -5.057840883455e-01, 1.672402119027e-06, 5.1289e+00, 9.4901e-02, + 2DIAGNOSTIC, 36, -5.057883932765e-01, 1.356193775795e-06, 5.2216e+00, 9.2696e-02, + 2DIAGNOSTIC, 37, -5.058032735242e-01, 1.367233998413e-06, 5.3183e+00, 9.6631e-02, + 2DIAGNOSTIC, 38, -5.058450011138e-01, 2.051353739419e-06, 5.4256e+00, 1.0732e-01, + 2DIAGNOSTIC, 39, -5.058499508627e-01, 2.745574881516e-06, 5.5239e+00, 9.8321e-02, + 2DIAGNOSTIC, 40, -5.058530337237e-01, 3.265546567634e-06, 5.6340e+00, 1.1006e-01, + 2DIAGNOSTIC, 41, -5.058558293562e-01, 3.543127151107e-06, 5.7453e+00, 1.1136e-01, + 2DIAGNOSTIC, 42, -5.058686053245e-01, 3.829025216923e-06, 5.8548e+00, 1.0942e-01, + 2DIAGNOSTIC, 43, -5.058762862717e-01, 3.851681849302e-06, 5.9484e+00, 9.3668e-02, + 2DIAGNOSTIC, 44, -5.058930191103e-01, 3.760736803662e-06, 6.0415e+00, 9.3103e-02, + 2DIAGNOSTIC, 45, -5.059510866124e-01, 4.115937908094e-06, 6.1798e+00, 1.3824e-01, + 2DIAGNOSTIC, 46, -5.059547191688e-01, 4.211107477375e-06, 6.2888e+00, 1.0905e-01, + 2DIAGNOSTIC, 47, -5.059334946774e-01, 3.883782924676e-06, 6.3990e+00, 1.1014e-01, + 2DIAGNOSTIC, 48, -5.059880349567e-01, 4.407774954994e-06, 6.7510e+00, 3.5204e-01, + 2DIAGNOSTIC, 49, -5.059880344487e-01, 4.584029392293e-06, 6.8491e+00, 9.8065e-02, + 2DIAGNOSTIC, 50, -5.059880359365e-01, 4.404789769537e-06, 6.9456e+00, 9.6525e-02, + 2DIAGNOSTIC, 51, -5.059880384517e-01, 3.909859061711e-06, 7.0422e+00, 9.6649e-02, + 2DIAGNOSTIC, 52, -5.059880427026e-01, 3.268851789744e-06, 7.1355e+00, 9.3221e-02, + 2DIAGNOSTIC, 53, -5.059880498836e-01, 2.472954250855e-06, 7.2318e+00, 9.6360e-02, + 2DIAGNOSTIC, 54, -5.059880620115e-01, 1.678873616059e-06, 7.3268e+00, 9.4944e-02, + 2DIAGNOSTIC, 55, -5.059880824903e-01, 1.409192575238e-06, 7.4231e+00, 9.6335e-02, + 2DIAGNOSTIC, 56, -5.059881173428e-01, 1.119069041659e-06, 7.5174e+00, 9.4301e-02, + Elapsed time (stage 1): 7.6552e+00 + + +Total elapsed time: 1.3077e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:58:43 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:58:44 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55615d5ff4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.604, -107.075] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55615d604fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f68b14da010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55615d600850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.604, -107.075] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55615d5fdf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f68ade1b010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55615d617b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.604, -107.075] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55615d604550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f68aa75c010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55615d61cd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.604, -107.075] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55615d61ac00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f68a709d010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55615d61ef70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.604, -107.075] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55615d61d3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f68a39de010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55615d61f540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [110.551, 61.604, -107.075] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55615d61f4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f68a031f010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.417431240840e-01, 1.797693134862e+308, 2.1302e-01, 2.1302e-01, + 2DIAGNOSTIC, 2, -5.442417837785e-01, 1.797693134862e+308, 2.1503e-01, 2.0070e-03, + 2DIAGNOSTIC, 3, -5.484440620907e-01, 1.797693134862e+308, 2.1702e-01, 1.9920e-03, + 2DIAGNOSTIC, 4, -5.546802564334e-01, 1.797693134862e+308, 2.1894e-01, 1.9181e-03, + 2DIAGNOSTIC, 5, -5.627356313244e-01, 1.797693134862e+308, 2.2089e-01, 1.9500e-03, + 2DIAGNOSTIC, 6, -5.671014287452e-01, 1.797693134862e+308, 2.2313e-01, 2.2380e-03, + 2DIAGNOSTIC, 7, -5.678806327399e-01, 1.797693134862e+308, 2.2510e-01, 1.9720e-03, + 2DIAGNOSTIC, 8, -5.684814095518e-01, 1.797693134862e+308, 2.2736e-01, 2.2628e-03, + 2DIAGNOSTIC, 9, -5.696747617747e-01, 1.797693134862e+308, 2.3075e-01, 3.3848e-03, + 2DIAGNOSTIC, 10, -5.698410047942e-01, 3.623551431733e-03, 2.3290e-01, 2.1529e-03, + 2DIAGNOSTIC, 11, -5.700965803326e-01, 2.671550512629e-03, 2.3502e-01, 2.1181e-03, + 2DIAGNOSTIC, 12, -5.706246287906e-01, 1.772251263223e-03, 2.3716e-01, 2.1410e-03, + 2DIAGNOSTIC, 13, -5.710318159636e-01, 1.031650611737e-03, 2.3926e-01, 2.1050e-03, + 2DIAGNOSTIC, 14, -5.714079753082e-01, 5.367364204967e-04, 2.4131e-01, 2.0468e-03, + 2DIAGNOSTIC, 15, -5.718169701505e-01, 3.409672561253e-04, 2.4362e-01, 2.3038e-03, + 2DIAGNOSTIC, 16, -5.722102627573e-01, 2.887905158984e-04, 2.4645e-01, 2.8329e-03, + 2DIAGNOSTIC, 17, -5.722977799575e-01, 2.417850732466e-04, 2.4851e-01, 2.0652e-03, + 2DIAGNOSTIC, 18, -5.724235783978e-01, 1.974143231658e-04, 2.5084e-01, 2.3229e-03, + 2DIAGNOSTIC, 19, -5.726950719942e-01, 1.784572726756e-04, 2.5366e-01, 2.8241e-03, + 2DIAGNOSTIC, 20, -5.727966683007e-01, 1.515083338929e-04, 2.5576e-01, 2.1040e-03, + 2DIAGNOSTIC, 21, -5.728260779932e-01, 1.197723941327e-04, 2.5793e-01, 2.1679e-03, + 2DIAGNOSTIC, 22, -5.728574594781e-01, 9.270424116008e-05, 2.6053e-01, 2.6019e-03, + 2DIAGNOSTIC, 23, -5.731111465555e-01, 7.385670904670e-05, 2.6386e-01, 3.3278e-03, + 2DIAGNOSTIC, 24, -5.732226144955e-01, 5.963158723637e-05, 2.6591e-01, 2.0492e-03, + 2DIAGNOSTIC, 25, -5.732585189454e-01, 4.979080152117e-05, 2.6804e-01, 2.1241e-03, + 2DIAGNOSTIC, 26, -5.732829266790e-01, 4.433547484954e-05, 2.7015e-01, 2.1172e-03, + 2DIAGNOSTIC, 27, -5.732946829402e-01, 3.709513230735e-05, 2.7228e-01, 2.1241e-03, + 2DIAGNOSTIC, 28, -5.733354838845e-01, 2.978478202096e-05, 2.7467e-01, 2.3901e-03, + 2DIAGNOSTIC, 29, -5.733433776246e-01, 2.500323450907e-05, 2.7700e-01, 2.3301e-03, + 2DIAGNOSTIC, 30, -5.733583171577e-01, 2.027807065753e-05, 2.8015e-01, 3.1500e-03, + 2DIAGNOSTIC, 31, -5.737425814293e-01, 2.077556747056e-05, 2.8396e-01, 3.8140e-03, + 2DIAGNOSTIC, 32, -5.737524757080e-01, 1.975923063636e-05, 2.8649e-01, 2.5280e-03, + 2DIAGNOSTIC, 33, -5.737550517697e-01, 2.092984082418e-05, 2.8865e-01, 2.1591e-03, + 2DIAGNOSTIC, 34, -5.737594455596e-01, 2.191917007136e-05, 2.9081e-01, 2.1579e-03, + 2DIAGNOSTIC, 35, -5.737616161739e-01, 2.138011019872e-05, 2.9323e-01, 2.4199e-03, + 2DIAGNOSTIC, 36, -5.737674781037e-01, 1.925877175096e-05, 2.9666e-01, 3.4361e-03, + 2DIAGNOSTIC, 37, -5.737676580866e-01, 1.563234242329e-05, 2.9926e-01, 2.6009e-03, + 2DIAGNOSTIC, 38, -5.737676743574e-01, 1.141026070810e-05, 3.0209e-01, 2.8288e-03, + 2DIAGNOSTIC, 39, -5.737676759335e-01, 6.556460824481e-06, 3.0474e-01, 2.6510e-03, + 2DIAGNOSTIC, 40, -5.737676762880e-01, 1.450348859400e-06, 3.0743e-01, 2.6870e-03, + 2DIAGNOSTIC, 41, -5.737676763641e-01, 1.205737863188e-06, 3.1009e-01, 2.6600e-03, + 2DIAGNOSTIC, 42, -5.737676763832e-01, 1.049741685681e-06, 3.1254e-01, 2.4490e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.717942518544e-01, 1.797693134862e+308, 5.4068e-01, 2.2814e-01, + 2DIAGNOSTIC, 2, -4.723641717186e-01, 1.797693134862e+308, 5.5459e-01, 1.3903e-02, + 2DIAGNOSTIC, 3, -4.728395128522e-01, 1.797693134862e+308, 5.6782e-01, 1.3230e-02, + 2DIAGNOSTIC, 4, -4.732554495518e-01, 1.797693134862e+308, 5.8283e-01, 1.5018e-02, + 2DIAGNOSTIC, 5, -4.732999965687e-01, 1.797693134862e+308, 5.9580e-01, 1.2970e-02, + 2DIAGNOSTIC, 6, -4.734496355777e-01, 1.797693134862e+308, 6.0890e-01, 1.3092e-02, + 2DIAGNOSTIC, 7, -4.738303058815e-01, 1.797693134862e+308, 6.2383e-01, 1.4938e-02, + 2DIAGNOSTIC, 8, -4.739322382908e-01, 1.797693134862e+308, 6.4447e-01, 2.0636e-02, + 2DIAGNOSTIC, 9, -4.739335044158e-01, 1.797693134862e+308, 6.5954e-01, 1.5071e-02, + 2DIAGNOSTIC, 10, -4.739293359640e-01, 2.774081449004e-04, 6.7542e-01, 1.5875e-02, + 2DIAGNOSTIC, 11, -4.739747506902e-01, 1.883101914987e-04, 6.9524e-01, 1.9825e-02, + 2DIAGNOSTIC, 12, -4.739789264927e-01, 1.253506203829e-04, 7.1092e-01, 1.5677e-02, + 2DIAGNOSTIC, 13, -4.739693744572e-01, 8.197837731495e-05, 7.2660e-01, 1.5685e-02, + 2DIAGNOSTIC, 14, -4.739479728021e-01, 5.482028860464e-05, 7.4110e-01, 1.4494e-02, + 2DIAGNOSTIC, 15, -4.739391711395e-01, 2.801722376285e-05, 7.5707e-01, 1.5968e-02, + 2DIAGNOSTIC, 16, -4.739423149014e-01, 7.526862306928e-06, 7.7372e-01, 1.6654e-02, + 2DIAGNOSTIC, 17, -4.739351467266e-01, 1.994094590417e-06, 7.8792e-01, 1.4205e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.974575568171e-01, 1.797693134862e+308, 1.1946e+00, 4.0670e-01, + 2DIAGNOSTIC, 2, -3.978215377254e-01, 1.797693134862e+308, 1.2867e+00, 9.2106e-02, + 2DIAGNOSTIC, 3, -3.979868982334e-01, 1.797693134862e+308, 1.3783e+00, 9.1614e-02, + 2DIAGNOSTIC, 4, -3.980767583327e-01, 1.797693134862e+308, 1.4704e+00, 9.2101e-02, + 2DIAGNOSTIC, 5, -3.981309823757e-01, 1.797693134862e+308, 1.5630e+00, 9.2588e-02, + 2DIAGNOSTIC, 6, -3.982612892108e-01, 1.797693134862e+308, 1.6799e+00, 1.1692e-01, + 2DIAGNOSTIC, 7, -3.982963942030e-01, 1.797693134862e+308, 1.8506e+00, 1.7070e-01, + 2DIAGNOSTIC, 8, -3.982967057342e-01, 1.797693134862e+308, 1.9556e+00, 1.0494e-01, + 2DIAGNOSTIC, 9, -3.982951091550e-01, 1.797693134862e+308, 2.0605e+00, 1.0494e-01, + 2DIAGNOSTIC, 10, -3.982951297226e-01, 1.169015676004e-04, 2.1667e+00, 1.0616e-01, + 2DIAGNOSTIC, 11, -3.982934715760e-01, 6.634349514570e-05, 2.2595e+00, 9.2855e-02, + 2DIAGNOSTIC, 12, -3.982945421579e-01, 4.001477183646e-05, 2.3638e+00, 1.0428e-01, + 2DIAGNOSTIC, 13, -3.982951743976e-01, 2.348081179497e-05, 2.4678e+00, 1.0401e-01, + 2DIAGNOSTIC, 14, -3.982955565017e-01, 1.203030003073e-05, 2.5586e+00, 9.0795e-02, + 2DIAGNOSTIC, 15, -3.982938276985e-01, 3.558171974616e-06, 2.6657e+00, 1.0704e-01, + 2DIAGNOSTIC, 16, -3.982943754065e-01, 1.809378400885e-06, 2.7719e+00, 1.0625e-01, + 2DIAGNOSTIC, 17, -3.982916023933e-01, 1.637399051513e-06, 2.8715e+00, 9.9553e-02, + 2DIAGNOSTIC, 18, -3.982921563556e-01, 1.542902414144e-06, 2.9589e+00, 8.7388e-02, + 2DIAGNOSTIC, 19, -3.982901599681e-01, 1.342498118471e-06, 3.0592e+00, 1.0038e-01, + 2DIAGNOSTIC, 20, -3.982870506245e-01, 1.086881493001e-06, 3.1419e+00, 8.2658e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.504075639761e-01, 1.797693134862e+308, 5.0260e+00, 1.8842e+00, + 2DIAGNOSTIC, 2, -3.504076090878e-01, 1.797693134862e+308, 5.8432e+00, 8.1717e-01, + 2DIAGNOSTIC, 3, -3.504076410962e-01, 1.797693134862e+308, 6.4615e+00, 6.1828e-01, + 2DIAGNOSTIC, 4, -3.504075417950e-01, 1.797693134862e+308, 7.0331e+00, 5.7164e-01, + 2DIAGNOSTIC, 5, -3.504074544799e-01, 1.797693134862e+308, 7.5616e+00, 5.2846e-01, + 2DIAGNOSTIC, 6, -3.504073623646e-01, 1.797693134862e+308, 8.1383e+00, 5.7668e-01, + 2DIAGNOSTIC, 7, -3.504072855747e-01, 1.797693134862e+308, 8.6834e+00, 5.4513e-01, + 2DIAGNOSTIC, 8, -3.504071162782e-01, 1.797693134862e+308, 9.3005e+00, 6.1707e-01, + 2DIAGNOSTIC, 9, -3.504072382325e-01, 1.797693134862e+308, 9.9216e+00, 6.2110e-01, + 2DIAGNOSTIC, 10, -3.504072179475e-01, 3.085822106050e-06, 1.0518e+01, 5.9655e-01, + 2DIAGNOSTIC, 11, -3.504071595895e-01, 2.803118913430e-06, 1.1022e+01, 5.0434e-01, + 2DIAGNOSTIC, 12, -3.504070215013e-01, 2.569346859854e-06, 1.1558e+01, 5.3533e-01, + 2DIAGNOSTIC, 13, -3.504069052910e-01, 2.374010998105e-06, 1.2087e+01, 5.2883e-01, + 2DIAGNOSTIC, 14, -3.504068147110e-01, 2.202172958377e-06, 1.2698e+01, 6.1095e-01, + 2DIAGNOSTIC, 15, -3.504067768367e-01, 2.052756319676e-06, 1.3212e+01, 5.1430e-01, + 2DIAGNOSTIC, 16, -3.504068008565e-01, 1.924884242083e-06, 1.3824e+01, 6.1176e-01, + 2DIAGNOSTIC, 17, -3.504067717827e-01, 1.813130043979e-06, 1.4436e+01, 6.1233e-01, + 2DIAGNOSTIC, 18, -3.504066158016e-01, 1.704436203759e-06, 1.5062e+01, 6.2621e-01, + 2DIAGNOSTIC, 19, -3.504064788523e-01, 1.612542340816e-06, 1.5678e+01, 6.1595e-01, + 2DIAGNOSTIC, 20, -3.504066188655e-01, 1.540445893428e-06, 1.6360e+01, 6.8161e-01, + 2DIAGNOSTIC, 21, -3.504065673574e-01, 1.475354156094e-06, 1.6970e+01, 6.0983e-01, + 2DIAGNOSTIC, 22, -3.504064956882e-01, 1.412256072787e-06, 1.7606e+01, 6.3599e-01, + 2DIAGNOSTIC, 23, -3.504064345431e-01, 1.351873646076e-06, 1.8181e+01, 5.7575e-01, + 2DIAGNOSTIC, 24, -3.504068018950e-01, 1.308909477263e-06, 1.8729e+01, 5.4747e-01, + 2DIAGNOSTIC, 25, -3.504068636558e-01, 1.271134467316e-06, 1.9349e+01, 6.2066e-01, + 2DIAGNOSTIC, 26, -3.504070517762e-01, 1.242970017849e-06, 1.9966e+01, 6.1690e-01, + 2DIAGNOSTIC, 27, -3.504070891283e-01, 1.215545614976e-06, 2.0589e+01, 6.2283e-01, + 2DIAGNOSTIC, 28, -3.504066469744e-01, 1.169426390106e-06, 2.1187e+01, 5.9754e-01, + 2DIAGNOSTIC, 29, -3.504063681939e-01, 1.111826650656e-06, 2.1793e+01, 6.0596e-01, + 2DIAGNOSTIC, 30, -3.504062615535e-01, 1.057550202209e-06, 2.2411e+01, 6.1798e-01, + 2DIAGNOSTIC, 31, -3.504061548376e-01, 1.002800753450e-06, 2.3025e+01, 6.1386e-01, + Elapsed time (stage 0): 2.3386e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.656726446935e-01, 1.797693134862e+308, 1.7439e-01, 1.7439e-01, + 2DIAGNOSTIC, 2, -5.666713176276e-01, 1.797693134862e+308, 1.7633e-01, 1.9391e-03, + 2DIAGNOSTIC, 3, -5.677249975004e-01, 1.797693134862e+308, 1.7820e-01, 1.8699e-03, + 2DIAGNOSTIC, 4, -5.693951236937e-01, 1.797693134862e+308, 1.8016e-01, 1.9569e-03, + 2DIAGNOSTIC, 5, -5.713652452289e-01, 1.797693134862e+308, 1.8243e-01, 2.2740e-03, + 2DIAGNOSTIC, 6, -5.727490815245e-01, 1.797693134862e+308, 1.8458e-01, 2.1451e-03, + 2DIAGNOSTIC, 7, -5.744609080493e-01, 1.797693134862e+308, 1.8686e-01, 2.2869e-03, + 2DIAGNOSTIC, 8, -5.751823339601e-01, 1.797693134862e+308, 1.8893e-01, 2.0700e-03, + 2DIAGNOSTIC, 9, -5.762416427587e-01, 1.797693134862e+308, 1.9136e-01, 2.4219e-03, + 2DIAGNOSTIC, 10, -5.786349685212e-01, 1.452158525098e-03, 1.9442e-01, 3.0680e-03, + 2DIAGNOSTIC, 11, -5.794711804700e-01, 1.320814668242e-03, 1.9687e-01, 2.4478e-03, + 2DIAGNOSTIC, 12, -5.804552925207e-01, 1.175638222751e-03, 2.0001e-01, 3.1369e-03, + 2DIAGNOSTIC, 13, -5.809094111230e-01, 1.004524952327e-03, 2.0287e-01, 2.8651e-03, + 2DIAGNOSTIC, 14, -5.804531737653e-01, 8.091378824998e-04, 2.0541e-01, 2.5392e-03, + 2DIAGNOSTIC, 15, -5.805081928760e-01, 6.325598215753e-04, 2.0771e-01, 2.2941e-03, + 2DIAGNOSTIC, 16, -5.809247268142e-01, 4.745521090830e-04, 2.0998e-01, 2.2731e-03, + 2DIAGNOSTIC, 17, -5.809216926051e-01, 3.412225768164e-04, 2.1227e-01, 2.2941e-03, + 2DIAGNOSTIC, 18, -5.810575136349e-01, 2.152511272863e-04, 2.1483e-01, 2.5551e-03, + 2DIAGNOSTIC, 19, -5.807675633653e-01, 1.019884861707e-04, 2.1794e-01, 3.1149e-03, + 2DIAGNOSTIC, 20, -5.806231717486e-01, 4.639673683691e-05, 2.2048e-01, 2.5358e-03, + 2DIAGNOSTIC, 21, -5.805527473823e-01, 9.135437033236e-06, 2.2302e-01, 2.5361e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.722630153838e-01, 1.797693134862e+308, 4.3306e-01, 2.1005e-01, + 2DIAGNOSTIC, 2, -4.729605341068e-01, 1.797693134862e+308, 4.4775e-01, 1.4685e-02, + 2DIAGNOSTIC, 3, -4.739333384067e-01, 1.797693134862e+308, 4.6280e-01, 1.5048e-02, + 2DIAGNOSTIC, 4, -4.749584852446e-01, 1.797693134862e+308, 4.7760e-01, 1.4802e-02, + 2DIAGNOSTIC, 5, -4.762435431957e-01, 1.797693134862e+308, 4.9155e-01, 1.3951e-02, + 2DIAGNOSTIC, 6, -4.773949008762e-01, 1.797693134862e+308, 5.0922e-01, 1.7667e-02, + 2DIAGNOSTIC, 7, -4.784929757717e-01, 1.797693134862e+308, 5.2851e-01, 1.9288e-02, + 2DIAGNOSTIC, 8, -4.785673825483e-01, 1.797693134862e+308, 5.4232e-01, 1.3815e-02, + 2DIAGNOSTIC, 9, -4.787772581354e-01, 1.797693134862e+308, 5.5670e-01, 1.4383e-02, + 2DIAGNOSTIC, 10, -4.790205564966e-01, 1.013659868272e-03, 5.6974e-01, 1.3038e-02, + 2DIAGNOSTIC, 11, -4.792308396627e-01, 7.978673339216e-04, 5.8381e-01, 1.4072e-02, + 2DIAGNOSTIC, 12, -4.793735748334e-01, 5.878453923976e-04, 5.9608e-01, 1.2262e-02, + 2DIAGNOSTIC, 13, -4.795925233953e-01, 4.121444063744e-04, 6.1127e-01, 1.5190e-02, + 2DIAGNOSTIC, 14, -4.796744431202e-01, 2.711055793578e-04, 6.2493e-01, 1.3659e-02, + 2DIAGNOSTIC, 15, -4.797564063731e-01, 1.778312316744e-04, 6.3851e-01, 1.3587e-02, + 2DIAGNOSTIC, 16, -4.799385788001e-01, 1.286541992936e-04, 6.5094e-01, 1.2428e-02, + 2DIAGNOSTIC, 17, -4.802246437604e-01, 1.219858613013e-04, 6.6656e-01, 1.5618e-02, + 2DIAGNOSTIC, 18, -4.805058778286e-01, 1.164258071398e-04, 6.8436e-01, 1.7806e-02, + 2DIAGNOSTIC, 19, -4.807547559028e-01, 1.149908215552e-04, 7.0022e-01, 1.5852e-02, + 2DIAGNOSTIC, 20, -4.807768623201e-01, 1.109971965027e-04, 7.1644e-01, 1.6222e-02, + 2DIAGNOSTIC, 21, -4.808816841743e-01, 1.061803618950e-04, 7.3235e-01, 1.5913e-02, + 2DIAGNOSTIC, 22, -4.808964842895e-01, 9.604010759574e-05, 7.4627e-01, 1.3920e-02, + 2DIAGNOSTIC, 23, -4.809171999632e-01, 8.402562838735e-05, 7.6043e-01, 1.4155e-02, + 2DIAGNOSTIC, 24, -4.809440577738e-01, 6.797562906162e-05, 7.7478e-01, 1.4354e-02, + 2DIAGNOSTIC, 25, -4.809872850800e-01, 4.995162317868e-05, 7.8898e-01, 1.4204e-02, + 2DIAGNOSTIC, 26, -4.811488885743e-01, 3.651796920669e-05, 8.1020e-01, 2.1217e-02, + 2DIAGNOSTIC, 27, -4.811760734794e-01, 2.744673582878e-05, 8.2425e-01, 1.4048e-02, + 2DIAGNOSTIC, 28, -4.811887842302e-01, 2.269883598809e-05, 8.3849e-01, 1.4237e-02, + 2DIAGNOSTIC, 29, -4.811998647399e-01, 2.161946580968e-05, 8.5280e-01, 1.4314e-02, + 2DIAGNOSTIC, 30, -4.812072527830e-01, 1.918365990777e-05, 8.6708e-01, 1.4275e-02, + 2DIAGNOSTIC, 31, -4.814171512474e-01, 2.116228482883e-05, 8.9249e-01, 2.5418e-02, + 2DIAGNOSTIC, 32, -4.814544166438e-01, 2.195530906503e-05, 9.4003e-01, 4.7533e-02, + 2DIAGNOSTIC, 33, -4.814544146478e-01, 2.114962933093e-05, 9.5450e-01, 1.4472e-02, + 2DIAGNOSTIC, 34, -4.814544150972e-01, 1.902714527295e-05, 9.6889e-01, 1.4391e-02, + 2DIAGNOSTIC, 35, -4.814544158572e-01, 1.596478274144e-05, 9.8309e-01, 1.4199e-02, + 2DIAGNOSTIC, 36, -4.814544171424e-01, 1.423439503539e-05, 9.9732e-01, 1.4236e-02, + 2DIAGNOSTIC, 37, -4.814544193154e-01, 1.173878840665e-05, 1.0116e+00, 1.4227e-02, + 2DIAGNOSTIC, 38, -4.814544229895e-01, 8.585258628836e-06, 1.0263e+00, 1.4709e-02, + 2DIAGNOSTIC, 39, -4.814544292011e-01, 5.068903668054e-06, 1.0417e+00, 1.5471e-02, + 2DIAGNOSTIC, 40, -4.814544397011e-01, 1.350786096307e-06, 1.0572e+00, 1.5478e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.013818171996e-01, 1.797693134862e+308, 1.4382e+00, 3.8097e-01, + 2DIAGNOSTIC, 2, -4.018199963322e-01, 1.797693134862e+308, 1.5389e+00, 1.0068e-01, + 2DIAGNOSTIC, 3, -4.021236207714e-01, 1.797693134862e+308, 1.6389e+00, 9.9997e-02, + 2DIAGNOSTIC, 4, -4.022865865381e-01, 1.797693134862e+308, 1.7393e+00, 1.0045e-01, + 2DIAGNOSTIC, 5, -4.024698955953e-01, 1.797693134862e+308, 1.8664e+00, 1.2712e-01, + 2DIAGNOSTIC, 6, -4.026259023980e-01, 1.797693134862e+308, 2.0087e+00, 1.4225e-01, + 2DIAGNOSTIC, 7, -4.026289778478e-01, 1.797693134862e+308, 2.0936e+00, 8.4912e-02, + 2DIAGNOSTIC, 8, -4.026391259119e-01, 1.797693134862e+308, 2.1763e+00, 8.2725e-02, + 2DIAGNOSTIC, 9, -4.026508993652e-01, 1.797693134862e+308, 2.2713e+00, 9.4937e-02, + 2DIAGNOSTIC, 10, -4.026610474670e-01, 1.835052610213e-04, 2.3727e+00, 1.0147e-01, + 2DIAGNOSTIC, 11, -4.026679518752e-01, 1.090237356794e-04, 2.4738e+00, 1.0106e-01, + 2DIAGNOSTIC, 12, -4.026760701237e-01, 6.346396077836e-05, 2.5881e+00, 1.1430e-01, + 2DIAGNOSTIC, 13, -4.026918672707e-01, 3.677423265329e-05, 2.7012e+00, 1.1310e-01, + 2DIAGNOSTIC, 14, -4.026984753466e-01, 1.914257518351e-05, 2.8016e+00, 1.0039e-01, + 2DIAGNOSTIC, 15, -4.027033405220e-01, 1.097638197212e-05, 2.9163e+00, 1.1471e-01, + 2DIAGNOSTIC, 16, -4.027070211240e-01, 1.007812935236e-05, 3.0833e+00, 1.6702e-01, + 2DIAGNOSTIC, 17, -4.027075112472e-01, 8.683056901528e-06, 3.1990e+00, 1.1570e-01, + 2DIAGNOSTIC, 18, -4.027075570010e-01, 7.201446586530e-06, 3.3198e+00, 1.2076e-01, + 2DIAGNOSTIC, 19, -4.027075654580e-01, 5.802828339264e-06, 3.4244e+00, 1.0466e-01, + 2DIAGNOSTIC, 20, -4.027075795871e-01, 4.520941813226e-06, 3.5239e+00, 9.9453e-02, + 2DIAGNOSTIC, 21, -4.027076180499e-01, 3.321168960693e-06, 3.6211e+00, 9.7259e-02, + 2DIAGNOSTIC, 22, -4.027078255829e-01, 2.318946807606e-06, 3.7213e+00, 1.0021e-01, + 2DIAGNOSTIC, 23, -4.027083157733e-01, 1.819853919734e-06, 3.8129e+00, 9.1599e-02, + 2DIAGNOSTIC, 24, -4.027090212611e-01, 1.533731889707e-06, 3.9149e+00, 1.0198e-01, + 2DIAGNOSTIC, 25, -4.027096541755e-01, 1.403155088370e-06, 4.0280e+00, 1.1313e-01, + 2DIAGNOSTIC, 26, -4.027099144018e-01, 1.376937898138e-06, 4.1424e+00, 1.1440e-01, + 2DIAGNOSTIC, 27, -4.027074183255e-01, 1.285937566174e-06, 4.3165e+00, 1.7406e-01, + 2DIAGNOSTIC, 28, -4.027075624204e-01, 1.197956845111e-06, 4.6679e+00, 3.5143e-01, + 2DIAGNOSTIC, 29, -4.027075624194e-01, 1.109406346726e-06, 4.9878e+00, 3.1988e-01, + 2DIAGNOSTIC, 30, -4.027075624194e-01, 1.024912936957e-06, 5.1006e+00, 1.1273e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.507876071532e-01, 1.797693134862e+308, 6.3359e+00, 1.2354e+00, + 2DIAGNOSTIC, 2, -3.509297109833e-01, 1.797693134862e+308, 6.8601e+00, 5.2416e-01, + 2DIAGNOSTIC, 3, -3.510026004129e-01, 1.797693134862e+308, 7.4478e+00, 5.8766e-01, + 2DIAGNOSTIC, 4, -3.510866107517e-01, 1.797693134862e+308, 8.5671e+00, 1.1193e+00, + 2DIAGNOSTIC, 5, -3.510889592147e-01, 1.797693134862e+308, 9.1326e+00, 5.6548e-01, + 2DIAGNOSTIC, 6, -3.510991529769e-01, 1.797693134862e+308, 9.6698e+00, 5.3723e-01, + 2DIAGNOSTIC, 7, -3.511134736372e-01, 1.797693134862e+308, 1.0283e+01, 6.1303e-01, + 2DIAGNOSTIC, 8, -3.511293422723e-01, 1.797693134862e+308, 1.0883e+01, 6.0019e-01, + 2DIAGNOSTIC, 9, -3.511424787062e-01, 1.797693134862e+308, 1.1452e+01, 5.6874e-01, + 2DIAGNOSTIC, 10, -3.511499216555e-01, 5.591856361163e-05, 1.1975e+01, 5.2300e-01, + 2DIAGNOSTIC, 11, -3.511585645004e-01, 3.365522019490e-05, 1.2501e+01, 5.2586e-01, + 2DIAGNOSTIC, 12, -3.511776945259e-01, 2.313304952374e-05, 1.3154e+01, 6.5301e-01, + 2DIAGNOSTIC, 13, -3.511867161648e-01, 1.730049225986e-05, 1.4727e+01, 1.5729e+00, + 2DIAGNOSTIC, 14, -3.511868256004e-01, 1.582173791101e-05, 1.6528e+01, 1.8011e+00, + 2DIAGNOSTIC, 15, -3.511868255998e-01, 1.344885131210e-05, 1.8009e+01, 1.4818e+00, + 2DIAGNOSTIC, 16, -3.511868255998e-01, 1.084444035555e-05, 1.8686e+01, 6.7617e-01, + 2DIAGNOSTIC, 17, -3.511868255998e-01, 8.386334877285e-06, 1.9504e+01, 8.1883e-01, + 2DIAGNOSTIC, 18, -3.511868255998e-01, 6.296533055741e-06, 2.0253e+01, 7.4828e-01, + 2DIAGNOSTIC, 19, -3.511868255998e-01, 4.573841308524e-06, 2.0844e+01, 5.9149e-01, + 2DIAGNOSTIC, 20, -3.511868255998e-01, 3.060515501987e-06, 2.1447e+01, 6.0238e-01, + 2DIAGNOSTIC, 21, -3.511868255998e-01, 1.870679138968e-06, 2.2127e+01, 6.8014e-01, + 2DIAGNOSTIC, 22, -3.511868255998e-01, 1.450189470613e-06, 2.2758e+01, 6.3091e-01, + 2DIAGNOSTIC, 23, -3.511868255998e-01, 1.383275736268e-06, 2.3345e+01, 5.8761e-01, + 2DIAGNOSTIC, 24, -3.511868255998e-01, 1.325629856122e-06, 2.3966e+01, 6.2049e-01, + 2DIAGNOSTIC, 25, -3.511868255998e-01, 1.272596350826e-06, 2.4601e+01, 6.3543e-01, + 2DIAGNOSTIC, 26, -3.511868255998e-01, 1.223642960714e-06, 2.5278e+01, 6.7690e-01, + 2DIAGNOSTIC, 27, -3.511868255998e-01, 1.178316273921e-06, 2.5861e+01, 5.8250e-01, + 2DIAGNOSTIC, 28, -3.511868255998e-01, 1.136227660639e-06, 2.6455e+01, 5.9485e-01, + 2DIAGNOSTIC, 29, -3.511868255998e-01, 1.097042102591e-06, 2.7105e+01, 6.4996e-01, + 2DIAGNOSTIC, 30, -3.511868255998e-01, 1.060469256256e-06, 2.7854e+01, 7.4871e-01, + 2DIAGNOSTIC, 31, -3.511868255998e-01, 1.026256246657e-06, 2.8406e+01, 5.5198e-01, + Elapsed time (stage 1): 2.8780e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.770524931398e-01, 1.797693134862e+308, 2.4747e-01, 2.4747e-01, + 1DIAGNOSTIC, 2, -8.879520895845e-01, 1.797693134862e+308, 3.4112e-01, 9.3651e-02, + 1DIAGNOSTIC, 3, -8.972623511092e-01, 1.797693134862e+308, 4.4100e-01, 9.9875e-02, + 1DIAGNOSTIC, 4, -9.051385679477e-01, 1.797693134862e+308, 5.4763e-01, 1.0663e-01, + 1DIAGNOSTIC, 5, -9.119456039674e-01, 1.797693134862e+308, 6.4959e-01, 1.0196e-01, + 1DIAGNOSTIC, 6, -9.171443481788e-01, 1.797693134862e+308, 7.4875e-01, 9.9160e-02, + 1DIAGNOSTIC, 7, -9.218802948052e-01, 1.797693134862e+308, 8.4763e-01, 9.8881e-02, + 1DIAGNOSTIC, 8, -9.258974024739e-01, 1.797693134862e+308, 9.5602e-01, 1.0839e-01, + 1DIAGNOSTIC, 9, -9.292955360891e-01, 1.797693134862e+308, 1.0593e+00, 1.0324e-01, + 1DIAGNOSTIC, 10, -9.320861048921e-01, 3.746536010065e-03, 1.1622e+00, 1.0294e-01, + 1DIAGNOSTIC, 11, -9.345235401668e-01, 2.869030203821e-03, 1.2682e+00, 1.0598e-01, + 1DIAGNOSTIC, 12, -9.366915518021e-01, 2.218416425456e-03, 1.3602e+00, 9.2070e-02, + 1DIAGNOSTIC, 13, -9.386608656956e-01, 1.735769506767e-03, 1.4668e+00, 1.0653e-01, + 1DIAGNOSTIC, 14, -9.403925366706e-01, 1.375853249969e-03, 1.5687e+00, 1.0192e-01, + 1DIAGNOSTIC, 15, -9.419208106238e-01, 1.109624249543e-03, 1.6690e+00, 1.0036e-01, + 1DIAGNOSTIC, 16, -9.431846389544e-01, 8.989594327161e-04, 1.7604e+00, 9.1327e-02, + 1DIAGNOSTIC, 17, -9.444221227362e-01, 7.380650961836e-04, 1.8608e+00, 1.0042e-01, + 1DIAGNOSTIC, 18, -9.454676550604e-01, 6.128623012257e-04, 1.9631e+00, 1.0231e-01, + 1DIAGNOSTIC, 19, -9.463927594873e-01, 5.136114681101e-04, 2.0645e+00, 1.0135e-01, + 1DIAGNOSTIC, 20, -9.472265398021e-01, 4.319271387446e-04, 2.1665e+00, 1.0207e-01, + 1DIAGNOSTIC, 21, -9.480215392261e-01, 3.647643975179e-04, 2.2677e+00, 1.0115e-01, + 1DIAGNOSTIC, 22, -9.486730223022e-01, 3.086631946970e-04, 2.3690e+00, 1.0134e-01, + 1DIAGNOSTIC, 23, -9.492280037495e-01, 2.619705393523e-04, 2.4734e+00, 1.0436e-01, + 1DIAGNOSTIC, 24, -9.497237416885e-01, 2.228715456929e-04, 2.5777e+00, 1.0435e-01, + 1DIAGNOSTIC, 25, -9.501401055485e-01, 1.896632029663e-04, 2.6814e+00, 1.0370e-01, + 1DIAGNOSTIC, 26, -9.505002848634e-01, 1.601342720856e-04, 2.7775e+00, 9.6082e-02, + 1DIAGNOSTIC, 27, -9.507979790925e-01, 1.350038679238e-04, 2.8731e+00, 9.5608e-02, + 1DIAGNOSTIC, 28, -9.510511455649e-01, 1.130612220645e-04, 2.9692e+00, 9.6123e-02, + 1DIAGNOSTIC, 29, -9.512811478429e-01, 9.408210832506e-05, 3.0700e+00, 1.0081e-01, + 1DIAGNOSTIC, 30, -9.514332015341e-01, 7.745360743321e-05, 3.1703e+00, 1.0023e-01, + 1DIAGNOSTIC, 31, -9.516053969160e-01, 6.407855889611e-05, 3.2720e+00, 1.0177e-01, + 1DIAGNOSTIC, 32, -9.517837009318e-01, 5.337063842896e-05, 3.3717e+00, 9.9659e-02, + 1DIAGNOSTIC, 33, -9.518860773811e-01, 4.431575606569e-05, 3.4686e+00, 9.6859e-02, + 1DIAGNOSTIC, 34, -9.520797576961e-01, 3.779068824843e-05, 3.5654e+00, 9.6834e-02, + 1DIAGNOSTIC, 35, -9.520382014003e-01, 3.132491364991e-05, 3.6647e+00, 9.9358e-02, + 1DIAGNOSTIC, 36, -9.521595231891e-01, 2.638463723247e-05, 3.7605e+00, 9.5780e-02, + 1DIAGNOSTIC, 37, -9.518646917716e-01, 1.925849604532e-05, 3.8636e+00, 1.0306e-01, + 1DIAGNOSTIC, 38, -9.519534572957e-01, 1.352221941505e-05, 3.9634e+00, 9.9764e-02, + 1DIAGNOSTIC, 39, -9.518621422182e-01, 7.900058310577e-06, 4.0683e+00, 1.0489e-01, + 1DIAGNOSTIC, 40, -9.519061320941e-01, 3.352079239877e-06, 4.1695e+00, 1.0127e-01, + 1DIAGNOSTIC, 41, -9.516938910480e-01, -1.527201302722e-06, 4.2696e+00, 1.0012e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.174960189421e-01, 1.797693134862e+308, 5.1343e+00, 8.6465e-01, + 1DIAGNOSTIC, 2, -9.204350004742e-01, 1.797693134862e+308, 5.8023e+00, 6.6796e-01, + 1DIAGNOSTIC, 3, -9.228231493459e-01, 1.797693134862e+308, 6.4400e+00, 6.3777e-01, + 1DIAGNOSTIC, 4, -9.251920462524e-01, 1.797693134862e+308, 7.0937e+00, 6.5367e-01, + 1DIAGNOSTIC, 5, -9.271693677953e-01, 1.797693134862e+308, 7.7589e+00, 6.6519e-01, + 1DIAGNOSTIC, 6, -9.292372163685e-01, 1.797693134862e+308, 8.3898e+00, 6.3091e-01, + 1DIAGNOSTIC, 7, -9.310933305339e-01, 1.797693134862e+308, 9.0368e+00, 6.4697e-01, + 1DIAGNOSTIC, 8, -9.329820883954e-01, 1.797693134862e+308, 9.6948e+00, 6.5799e-01, + 1DIAGNOSTIC, 9, -9.348876907625e-01, 1.797693134862e+308, 1.0357e+01, 6.6273e-01, + 1DIAGNOSTIC, 10, -9.365995223639e-01, 1.288503731029e-03, 1.1020e+01, 6.6230e-01, + 1DIAGNOSTIC, 11, -9.379549205743e-01, 1.098540891797e-03, 1.1664e+01, 6.4440e-01, + 1DIAGNOSTIC, 12, -9.390988342861e-01, 9.452646829446e-04, 1.2334e+01, 6.7005e-01, + 1DIAGNOSTIC, 13, -9.400702890090e-01, 8.085819505144e-04, 1.3000e+01, 6.6591e-01, + 1DIAGNOSTIC, 14, -9.409232135890e-01, 6.877987985682e-04, 1.3658e+01, 6.5748e-01, + 1DIAGNOSTIC, 15, -9.415439184289e-01, 5.727022045340e-04, 1.4321e+01, 6.6316e-01, + 1DIAGNOSTIC, 16, -9.420991920949e-01, 4.693295784749e-04, 1.4986e+01, 6.6472e-01, + 1DIAGNOSTIC, 17, -9.426030380924e-01, 3.770510569708e-04, 1.5637e+01, 6.5100e-01, + 1DIAGNOSTIC, 18, -9.430344906840e-01, 2.991538313522e-04, 1.6277e+01, 6.4055e-01, + 1DIAGNOSTIC, 19, -9.434190435186e-01, 2.381531089864e-04, 1.6946e+01, 6.6886e-01, + 1DIAGNOSTIC, 20, -9.437570868661e-01, 1.921685749937e-04, 1.7588e+01, 6.4201e-01, + 1DIAGNOSTIC, 21, -9.440550883954e-01, 1.565167666943e-04, 1.8237e+01, 6.4882e-01, + 1DIAGNOSTIC, 22, -9.443250088627e-01, 1.289472653919e-04, 1.8874e+01, 6.3773e-01, + 1DIAGNOSTIC, 23, -9.445691898993e-01, 1.076964549473e-04, 1.9543e+01, 6.6828e-01, + 1DIAGNOSTIC, 24, -9.447871085794e-01, 9.167409105449e-05, 2.0212e+01, 6.6957e-01, + 1DIAGNOSTIC, 25, -9.449751819674e-01, 7.816009404096e-05, 2.0854e+01, 6.4176e-01, + 1DIAGNOSTIC, 26, -9.451470458144e-01, 6.684381065124e-05, 2.1489e+01, 6.3496e-01, + 1DIAGNOSTIC, 27, -9.453096880827e-01, 5.759103037117e-05, 2.2125e+01, 6.3605e-01, + 1DIAGNOSTIC, 28, -9.454549070775e-01, 4.984748014353e-05, 2.2764e+01, 6.3900e-01, + 1DIAGNOSTIC, 29, -9.455882309455e-01, 4.338898531744e-05, 2.3414e+01, 6.4968e-01, + 1DIAGNOSTIC, 30, -9.457089488534e-01, 3.794624763637e-05, 2.4087e+01, 6.7332e-01, + 1DIAGNOSTIC, 31, -9.458150874938e-01, 3.326781012734e-05, 2.4749e+01, 6.6194e-01, + 1DIAGNOSTIC, 32, -9.459116553910e-01, 2.925429340240e-05, 2.5411e+01, 6.6198e-01, + 1DIAGNOSTIC, 33, -9.459985260090e-01, 2.580461735639e-05, 2.6063e+01, 6.5213e-01, + 1DIAGNOSTIC, 34, -9.460672304552e-01, 2.272251279612e-05, 2.6730e+01, 6.6692e-01, + 1DIAGNOSTIC, 35, -9.461345779270e-01, 1.993209021885e-05, 2.7394e+01, 6.6359e-01, + 1DIAGNOSTIC, 36, -9.461874819593e-01, 1.735317805505e-05, 2.8063e+01, 6.6918e-01, + 1DIAGNOSTIC, 37, -9.462392224399e-01, 1.508007130619e-05, 2.8729e+01, 6.6580e-01, + 1DIAGNOSTIC, 38, -9.462922773717e-01, 1.313219712905e-05, 2.9391e+01, 6.6250e-01, + 1DIAGNOSTIC, 39, -9.463315692059e-01, 1.143369484273e-05, 3.0054e+01, 6.6322e-01, + 1DIAGNOSTIC, 40, -9.463699576904e-01, 9.998419276399e-06, 3.0709e+01, 6.5429e-01, + 1DIAGNOSTIC, 41, -9.464037085436e-01, 8.774777104623e-06, 3.1358e+01, 6.4896e-01, + 1DIAGNOSTIC, 42, -9.464330275035e-01, 7.740215119224e-06, 3.2012e+01, 6.5402e-01, + 1DIAGNOSTIC, 43, -9.464589068806e-01, 6.870413830736e-06, 3.2666e+01, 6.5477e-01, + 1DIAGNOSTIC, 44, -9.464811569343e-01, 6.070547300844e-06, 3.3335e+01, 6.6904e-01, + 1DIAGNOSTIC, 45, -9.464989877531e-01, 5.361950316311e-06, 3.4000e+01, 6.6497e-01, + 1DIAGNOSTIC, 46, -9.465113369340e-01, 4.662283785012e-06, 3.4660e+01, 6.6003e-01, + 1DIAGNOSTIC, 47, -9.465087918438e-01, 3.923102745124e-06, 3.5310e+01, 6.4982e-01, + 1DIAGNOSTIC, 48, -9.465172860161e-01, 3.290147165928e-06, 3.5975e+01, 6.6452e-01, + 1DIAGNOSTIC, 49, -9.465234435872e-01, 2.706765046968e-06, 3.6644e+01, 6.6892e-01, + 1DIAGNOSTIC, 50, -9.465256045970e-01, 2.190364440820e-06, 3.7312e+01, 6.6867e-01, + 1DIAGNOSTIC, 51, -9.465191721057e-01, 1.705675317511e-06, 3.7993e+01, 6.8074e-01, + 1DIAGNOSTIC, 52, -9.465216316795e-01, 1.321260099142e-06, 3.8677e+01, 6.8418e-01, + 1DIAGNOSTIC, 53, -9.465264807507e-01, 1.055838294701e-06, 3.9361e+01, 6.8382e-01, + 1DIAGNOSTIC, 54, -9.465261119150e-01, 8.748838821772e-07, 4.0018e+01, 6.5689e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.029555006340e-01, 1.797693134862e+308, 4.5666e+01, 5.6485e+00, + 1DIAGNOSTIC, 2, -9.062490351969e-01, 1.797693134862e+308, 5.0972e+01, 5.3056e+00, + 1DIAGNOSTIC, 3, -9.090386938648e-01, 1.797693134862e+308, 5.6324e+01, 5.3520e+00, + 1DIAGNOSTIC, 4, -9.116676028160e-01, 1.797693134862e+308, 6.1691e+01, 5.3674e+00, + 1DIAGNOSTIC, 5, -9.140677686277e-01, 1.797693134862e+308, 6.7048e+01, 5.3566e+00, + 1DIAGNOSTIC, 6, -9.162947283871e-01, 1.797693134862e+308, 7.2359e+01, 5.3111e+00, + 1DIAGNOSTIC, 7, -9.182521535360e-01, 1.797693134862e+308, 7.7717e+01, 5.3575e+00, + 1DIAGNOSTIC, 8, -9.199000917540e-01, 1.797693134862e+308, 8.3060e+01, 5.3439e+00, + 1DIAGNOSTIC, 9, -9.213120979832e-01, 1.797693134862e+308, 8.8416e+01, 5.3552e+00, + 1DIAGNOSTIC, 10, -9.225339340049e-01, 1.364982564505e-03, 9.3743e+01, 5.3271e+00, + 1DIAGNOSTIC, 11, -9.236069079810e-01, 1.103076452144e-03, 9.9097e+01, 5.3547e+00, + 1DIAGNOSTIC, 12, -9.244340707570e-01, 8.918416392083e-04, 1.0445e+02, 5.3538e+00, + 1DIAGNOSTIC, 13, -9.251764776418e-01, 7.163782382727e-04, 1.0985e+02, 5.4006e+00, + 1DIAGNOSTIC, 14, -9.257448373727e-01, 5.712895996177e-04, 1.1522e+02, 5.3665e+00, + 1DIAGNOSTIC, 15, -9.262626917845e-01, 4.532551659778e-04, 1.2060e+02, 5.3845e+00, + 1DIAGNOSTIC, 16, -9.267487055757e-01, 3.605450734278e-04, 1.2596e+02, 5.3621e+00, + 1DIAGNOSTIC, 17, -9.272023629177e-01, 2.891676974455e-04, 1.3135e+02, 5.3867e+00, + 1DIAGNOSTIC, 18, -9.276295659703e-01, 2.344708804719e-04, 1.3667e+02, 5.3187e+00, + 1DIAGNOSTIC, 19, -9.280356165187e-01, 1.932348875463e-04, 1.4205e+02, 5.3757e+00, + 1DIAGNOSTIC, 20, -9.284192124615e-01, 1.628371651374e-04, 1.4739e+02, 5.3464e+00, + 1DIAGNOSTIC, 21, -9.287719961525e-01, 1.410589342906e-04, 1.5278e+02, 5.3888e+00, + 1DIAGNOSTIC, 22, -9.290996586640e-01, 1.242263753855e-04, 1.5814e+02, 5.3561e+00, + 1DIAGNOSTIC, 23, -9.293364024425e-01, 1.103640917539e-04, 1.6350e+02, 5.3627e+00, + 1DIAGNOSTIC, 24, -9.295021727479e-01, 9.677616155285e-05, 1.6887e+02, 5.3724e+00, + 1DIAGNOSTIC, 25, -9.295387596135e-01, 8.206974138173e-05, 1.7426e+02, 5.3840e+00, + 1DIAGNOSTIC, 26, -9.294819177597e-01, 6.593400962740e-05, 1.7961e+02, 5.3497e+00, + 1DIAGNOSTIC, 27, -9.293646599662e-01, 4.870161263798e-05, 1.8499e+02, 5.3798e+00, + 1DIAGNOSTIC, 28, -9.292053332642e-01, 3.113252525984e-05, 1.9034e+02, 5.3509e+00, + 1DIAGNOSTIC, 29, -9.290131853756e-01, 1.419091640679e-05, 1.9570e+02, 5.3612e+00, + 1DIAGNOSTIC, 30, -9.288043907426e-01, -1.074729944352e-06, 2.0105e+02, 5.3564e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.018111972495e-01, 1.797693134862e+308, 2.4479e+02, 4.3739e+01, + 1DIAGNOSTIC, 2, -9.031446194467e-01, 1.797693134862e+308, 2.8885e+02, 4.4062e+01, + 1DIAGNOSTIC, 3, -9.046524712154e-01, 1.797693134862e+308, 3.3352e+02, 4.4668e+01, + 1DIAGNOSTIC, 4, -9.061600633933e-01, 1.797693134862e+308, 3.7863e+02, 4.5109e+01, + 1DIAGNOSTIC, 5, -9.076852435783e-01, 1.797693134862e+308, 4.2362e+02, 4.4987e+01, + 1DIAGNOSTIC, 6, -9.092447444699e-01, 1.797693134862e+308, 4.6823e+02, 4.4616e+01, + 1DIAGNOSTIC, 7, -9.107519144196e-01, 1.797693134862e+308, 5.1303e+02, 4.4798e+01, + 1DIAGNOSTIC, 8, -9.121540244905e-01, 1.797693134862e+308, 5.5751e+02, 4.4479e+01, + 1DIAGNOSTIC, 9, -9.134579648987e-01, 1.797693134862e+308, 6.0074e+02, 4.3226e+01, + 1DIAGNOSTIC, 10, -9.146175293674e-01, 9.256883873543e-04, 6.4442e+02, 4.3679e+01, + 1DIAGNOSTIC, 11, -9.156479293152e-01, 8.177233665651e-04, 6.8776e+02, 4.3341e+01, + 1DIAGNOSTIC, 12, -9.165991493567e-01, 7.134756796390e-04, 7.3097e+02, 4.3215e+01, + 1DIAGNOSTIC, 13, -9.174866428683e-01, 6.180153205200e-04, 7.7421e+02, 4.3240e+01, + 1DIAGNOSTIC, 14, -9.182963998260e-01, 5.313836153351e-04, 8.1751e+02, 4.3295e+01, + 1DIAGNOSTIC, 15, -9.190442089665e-01, 4.547431246420e-04, 8.6098e+02, 4.3476e+01, + 1DIAGNOSTIC, 16, -9.197315165879e-01, 3.894877217452e-04, 9.0430e+02, 4.3315e+01, + 1DIAGNOSTIC, 17, -9.202713610529e-01, 3.333330083615e-04, 9.4780e+02, 4.3505e+01, + 1DIAGNOSTIC, 18, -9.207715465335e-01, 2.853582078487e-04, 9.9133e+02, 4.3529e+01, + 1DIAGNOSTIC, 19, -9.211277251486e-01, 2.430382710718e-04, 1.0348e+03, 4.3484e+01, + 1DIAGNOSTIC, 20, -9.214693526008e-01, 2.056430981287e-04, 1.0784e+03, 4.3541e+01, + Elapsed time (stage 2): 1079 + + +Total elapsed time: 1131 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:10 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:10 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:13 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:17 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:20 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 27448 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:20 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:23 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:23 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 27545 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:23 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:26 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 27591 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:27 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 27596 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:27 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:31 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:33 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:33 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:34 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:35 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:37 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:37 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:38 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:38 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:40 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC008 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:50 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC008 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:01 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC008 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:01 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC008 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 28317 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:03 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:03 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 28457 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:05 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:05 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC008_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 66.317 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/logs/proc_func_19-03-2024-32155.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:10 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC008 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/QC/sub-PNC008_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC008* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 66.383 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC008_ses-03 +========================reprocessing without filter=================== +sub-PNC009_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC009 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC009 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC009 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC009 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:15 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:15 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:21:17 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:23:22 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:23:37 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.10 (mm) at sub-brick 118 +++ Max delta displ in automask = 0.78 (mm) at sub-brick 97 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:36:13 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:36:30 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:38:37 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:40:44 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz is 43.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:42:54 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.422 -3.723 1.097 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.4 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.549 -5.469 1.724 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.3 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:47:35 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:48:02 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x562b684766f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.8983, 1.9] + Origin: [106.619, 44.8944, -127.773] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.8983 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562b682ed730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562b6848d320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x562b68479fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.3093, 116.5, -137.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562b6847fe10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562b68c8a230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x562b68c885c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.8983, 1.9] + Origin: [106.619, 44.8944, -127.773] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.8983 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562b6847c3f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562b697b4450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x562b68c86da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [74.3093, 116.5, -137.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x562b68483360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x562b69fae780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.098939591784e-01, 1.797693134862e+308, 4.5908e-02, 4.5907e-02, + 2DIAGNOSTIC, 2, -6.117992081546e-01, 1.797693134862e+308, 4.7265e-02, 1.3571e-03, + 2DIAGNOSTIC, 3, -6.149893004231e-01, 1.797693134862e+308, 4.8614e-02, 1.3492e-03, + 2DIAGNOSTIC, 4, -6.205300854883e-01, 1.797693134862e+308, 5.0007e-02, 1.3928e-03, + 2DIAGNOSTIC, 5, -6.230022888675e-01, 1.797693134862e+308, 5.1196e-02, 1.1890e-03, + 2DIAGNOSTIC, 6, -6.383761889078e-01, 1.797693134862e+308, 5.2591e-02, 1.3950e-03, + 2DIAGNOSTIC, 7, -6.958192815860e-01, 1.797693134862e+308, 5.4692e-02, 2.1012e-03, + 2DIAGNOSTIC, 8, -6.970414234710e-01, 1.797693134862e+308, 5.5855e-02, 1.1630e-03, + 2DIAGNOSTIC, 9, -7.005854049421e-01, 1.797693134862e+308, 5.7254e-02, 1.3990e-03, + 2DIAGNOSTIC, 10, -7.076842299067e-01, 1.180147482700e-02, 5.8909e-02, 1.6551e-03, + 2DIAGNOSTIC, 11, -7.091286149313e-01, 1.095532565162e-02, 6.0279e-02, 1.3700e-03, + 2DIAGNOSTIC, 12, -7.123609852031e-01, 9.432157232381e-03, 6.1872e-02, 1.5931e-03, + 2DIAGNOSTIC, 13, -7.136086192993e-01, 7.455151015085e-03, 6.3433e-02, 1.5609e-03, + 2DIAGNOSTIC, 14, -7.146208389089e-01, 5.334051079895e-03, 6.4750e-02, 1.3170e-03, + 2DIAGNOSTIC, 15, -7.174130306421e-01, 3.181357969556e-03, 6.6066e-02, 1.3151e-03, + 2DIAGNOSTIC, 16, -7.187224944820e-01, 1.418581016173e-03, 6.7380e-02, 1.3149e-03, + 2DIAGNOSTIC, 17, -7.200525322529e-01, 1.196844858919e-03, 6.9783e-02, 2.4030e-03, + 2DIAGNOSTIC, 18, -7.204062340416e-01, 9.275833836277e-04, 7.1090e-02, 1.3070e-03, + 2DIAGNOSTIC, 19, -7.209730572734e-01, 6.897617900462e-04, 7.2618e-02, 1.5280e-03, + 2DIAGNOSTIC, 20, -7.212356361810e-01, 5.654935349728e-04, 7.4183e-02, 1.5650e-03, + 2DIAGNOSTIC, 21, -7.213284376582e-01, 4.297446052847e-04, 7.5711e-02, 1.5280e-03, + 2DIAGNOSTIC, 22, -7.214066241979e-01, 3.292940896258e-04, 7.6993e-02, 1.2820e-03, + 2DIAGNOSTIC, 23, -7.216254909012e-01, 2.339602345629e-04, 7.9013e-02, 2.0199e-03, + 2DIAGNOSTIC, 24, -7.217520922491e-01, 1.437024403199e-04, 8.0399e-02, 1.3859e-03, + 2DIAGNOSTIC, 25, -7.218083430588e-01, 9.407533746554e-05, 8.1727e-02, 1.3280e-03, + 2DIAGNOSTIC, 26, -7.219126803247e-01, 6.163758792975e-05, 8.3361e-02, 1.6341e-03, + 2DIAGNOSTIC, 27, -7.229253133093e-01, 6.152023811572e-05, 8.5296e-02, 1.9350e-03, + 2DIAGNOSTIC, 28, -7.248533234467e-01, 8.841503982905e-05, 8.8290e-02, 2.9941e-03, + 2DIAGNOSTIC, 29, -7.249944360644e-01, 1.144192252908e-04, 9.0214e-02, 1.9238e-03, + 2DIAGNOSTIC, 30, -7.252183559290e-01, 1.350189123529e-04, 9.2153e-02, 1.9391e-03, + 2DIAGNOSTIC, 31, -7.256921894439e-01, 1.493230435066e-04, 9.3628e-02, 1.4749e-03, + 2DIAGNOSTIC, 32, -7.258288893508e-01, 1.509254750003e-04, 9.5094e-02, 1.4660e-03, + 2DIAGNOSTIC, 33, -7.260574404697e-01, 1.433290383449e-04, 9.6580e-02, 1.4861e-03, + 2DIAGNOSTIC, 34, -7.272930777421e-01, 1.390457884999e-04, 9.8067e-02, 1.4868e-03, + 2DIAGNOSTIC, 35, -7.293551410050e-01, 1.464711612730e-04, 1.0056e-01, 2.4939e-03, + 2DIAGNOSTIC, 36, -7.296278175436e-01, 1.432827183848e-04, 1.0204e-01, 1.4801e-03, + 2DIAGNOSTIC, 37, -7.299577162600e-01, 1.412127925139e-04, 1.0352e-01, 1.4789e-03, + 2DIAGNOSTIC, 38, -7.302851969450e-01, 1.501398287478e-04, 1.0548e-01, 1.9600e-03, + 2DIAGNOSTIC, 39, -7.304606126487e-01, 1.473542121972e-04, 1.0717e-01, 1.6928e-03, + 2DIAGNOSTIC, 40, -7.312825261683e-01, 1.408417268860e-04, 1.0893e-01, 1.7571e-03, + 2DIAGNOSTIC, 41, -7.303458924185e-01, 1.166621306709e-04, 1.1061e-01, 1.6811e-03, + 2DIAGNOSTIC, 42, -7.367431397525e-01, 1.458961623923e-04, 1.1254e-01, 1.9310e-03, + 2DIAGNOSTIC, 43, -7.391899160627e-01, 1.830378676406e-04, 1.1424e-01, 1.7021e-03, + 2DIAGNOSTIC, 44, -7.412756097584e-01, 2.306993064448e-04, 1.1593e-01, 1.6820e-03, + 2DIAGNOSTIC, 45, -7.434189077925e-01, 2.922091696675e-04, 1.1765e-01, 1.7281e-03, + 2DIAGNOSTIC, 46, -7.452152333725e-01, 3.409641734495e-04, 1.1934e-01, 1.6880e-03, + 2DIAGNOSTIC, 47, -7.455261880938e-01, 3.596142731971e-04, 1.2078e-01, 1.4389e-03, + 2DIAGNOSTIC, 48, -7.457671448680e-01, 3.475422207519e-04, 1.2254e-01, 1.7622e-03, + 2DIAGNOSTIC, 49, -7.460767097105e-01, 3.070861414874e-04, 1.2447e-01, 1.9238e-03, + 2DIAGNOSTIC, 50, -7.463784251658e-01, 2.486802907445e-04, 1.2665e-01, 2.1811e-03, + 2DIAGNOSTIC, 51, -7.471350102059e-01, 1.662454166448e-04, 1.2859e-01, 1.9410e-03, + 2DIAGNOSTIC, 52, -7.472753983908e-01, 1.210431350805e-04, 1.3087e-01, 2.2790e-03, + 2DIAGNOSTIC, 53, -7.476648269945e-01, 8.736035931742e-05, 1.3319e-01, 2.3201e-03, + 2DIAGNOSTIC, 54, -7.483107612875e-01, 6.648015405943e-05, 1.3475e-01, 1.5640e-03, + 2DIAGNOSTIC, 55, -7.485305171506e-01, 5.667108821934e-05, 1.3653e-01, 1.7760e-03, + 2DIAGNOSTIC, 56, -7.501306569280e-01, 6.585678303859e-05, 1.3826e-01, 1.7321e-03, + 2DIAGNOSTIC, 57, -7.505984215329e-01, 7.359316835497e-05, 1.4006e-01, 1.8029e-03, + 2DIAGNOSTIC, 58, -7.518648341989e-01, 8.437835789544e-05, 1.4237e-01, 2.3119e-03, + 2DIAGNOSTIC, 59, -7.534608238213e-01, 9.940808028734e-05, 1.4394e-01, 1.5619e-03, + 2DIAGNOSTIC, 60, -7.536949534026e-01, 1.076240507644e-04, 1.4547e-01, 1.5380e-03, + 2DIAGNOSTIC, 61, -7.538712236759e-01, 1.114029708867e-04, 1.4697e-01, 1.4961e-03, + 2DIAGNOSTIC, 62, -7.541298542155e-01, 1.069682004128e-04, 1.4849e-01, 1.5149e-03, + 2DIAGNOSTIC, 63, -7.548750240860e-01, 9.941935655552e-05, 1.5078e-01, 2.2938e-03, + 2DIAGNOSTIC, 64, -7.549244079552e-01, 8.671790219652e-05, 1.5229e-01, 1.5090e-03, + 2DIAGNOSTIC, 65, -7.550057439700e-01, 6.784269666164e-05, 1.5379e-01, 1.5030e-03, + 2DIAGNOSTIC, 66, -7.553067013651e-01, 5.462286935347e-05, 1.5595e-01, 2.1620e-03, + 2DIAGNOSTIC, 67, -7.555951957444e-01, 4.088084982064e-05, 1.5743e-01, 1.4741e-03, + 2DIAGNOSTIC, 68, -7.557381842208e-01, 3.148977268319e-05, 1.5888e-01, 1.4560e-03, + 2DIAGNOSTIC, 69, -7.559398144870e-01, 2.963162674510e-05, 1.6033e-01, 1.4439e-03, + 2DIAGNOSTIC, 70, -7.573214143484e-01, 3.412715919497e-05, 1.6253e-01, 2.1989e-03, + 2DIAGNOSTIC, 71, -7.576400021111e-01, 3.776672486490e-05, 1.6399e-01, 1.4601e-03, + 2DIAGNOSTIC, 72, -7.580428057419e-01, 4.122425663436e-05, 1.6573e-01, 1.7440e-03, + 2DIAGNOSTIC, 73, -7.586917475677e-01, 4.821609995482e-05, 1.6749e-01, 1.7579e-03, + 2DIAGNOSTIC, 74, -7.597803539578e-01, 5.636377984771e-05, 1.6946e-01, 1.9710e-03, + 2DIAGNOSTIC, 75, -7.600083351236e-01, 6.027097776550e-05, 1.7121e-01, 1.7550e-03, + 2DIAGNOSTIC, 76, -7.596624501474e-01, 5.807773711887e-05, 1.7276e-01, 1.5459e-03, + 2DIAGNOSTIC, 77, -7.610544206274e-01, 5.911851206956e-05, 1.7424e-01, 1.4749e-03, + 2DIAGNOSTIC, 78, -7.609671446183e-01, 5.454299204513e-05, 1.7601e-01, 1.7738e-03, + 2DIAGNOSTIC, 79, -7.624100977437e-01, 5.280687092839e-05, 1.7780e-01, 1.7929e-03, + 2DIAGNOSTIC, 80, -7.654504903660e-01, 6.752432091604e-05, 1.7999e-01, 2.1839e-03, + 2DIAGNOSTIC, 81, -7.695323790243e-01, 9.628055711841e-05, 1.8170e-01, 1.7102e-03, + 2DIAGNOSTIC, 82, -7.700399092818e-01, 1.189833767643e-04, 1.8328e-01, 1.5860e-03, + 2DIAGNOSTIC, 83, -7.697163222153e-01, 1.313768720834e-04, 1.8481e-01, 1.5230e-03, + 2DIAGNOSTIC, 84, -7.701618264563e-01, 1.381847671438e-04, 1.8627e-01, 1.4660e-03, + 2DIAGNOSTIC, 85, -7.716597906000e-01, 1.391530876561e-04, 1.8824e-01, 1.9681e-03, + 2DIAGNOSTIC, 86, -7.719693634530e-01, 1.258834315549e-04, 1.9045e-01, 2.2140e-03, + 2DIAGNOSTIC, 87, -7.714129889157e-01, 1.048223893805e-04, 1.9191e-01, 1.4579e-03, + 2DIAGNOSTIC, 88, -7.726562884594e-01, 7.974426742667e-05, 1.9339e-01, 1.4770e-03, + 2DIAGNOSTIC, 89, -7.770215711189e-01, 7.255204456743e-05, 1.9484e-01, 1.4560e-03, + 2DIAGNOSTIC, 90, -7.775100083689e-01, 7.261457380032e-05, 1.9634e-01, 1.4989e-03, + 2DIAGNOSTIC, 91, -7.796167136841e-01, 9.219374833846e-05, 1.9783e-01, 1.4892e-03, + 2DIAGNOSTIC, 92, -7.844649946208e-01, 1.252144889498e-04, 2.0030e-01, 2.4710e-03, + 2DIAGNOSTIC, 93, -7.890698623214e-01, 1.626548586049e-04, 2.0179e-01, 1.4889e-03, + 2DIAGNOSTIC, 94, -7.916581880682e-01, 1.953224292761e-04, 2.0348e-01, 1.6849e-03, + 2DIAGNOSTIC, 95, -7.963749512217e-01, 2.337681189260e-04, 2.0525e-01, 1.7741e-03, + 2DIAGNOSTIC, 96, -8.105377290503e-01, 3.069305708570e-04, 2.0700e-01, 1.7529e-03, + 2DIAGNOSTIC, 97, -8.144078867489e-01, 3.603874886607e-04, 2.0873e-01, 1.7259e-03, + 2DIAGNOSTIC, 98, -8.169731322952e-01, 3.925506787465e-04, 2.1023e-01, 1.4980e-03, + 2DIAGNOSTIC, 99, -8.239986547627e-01, 4.310843743067e-04, 2.1202e-01, 1.7910e-03, + 2DIAGNOSTIC, 100, -8.378252506730e-01, 4.812852901422e-04, 2.1469e-01, 2.6700e-03, + 2DIAGNOSTIC, 101, -8.388743324929e-01, 4.936107127179e-04, 2.1614e-01, 1.4520e-03, + 2DIAGNOSTIC, 102, -8.418597342320e-01, 4.877038016686e-04, 2.1761e-01, 1.4739e-03, + 2DIAGNOSTIC, 103, -8.471223732391e-01, 4.724216754132e-04, 2.1906e-01, 1.4501e-03, + 2DIAGNOSTIC, 104, -8.492341846107e-01, 4.283887855380e-04, 2.2056e-01, 1.4961e-03, + 2DIAGNOSTIC, 105, -8.498139105341e-01, 3.612033912414e-04, 2.2229e-01, 1.7281e-03, + 2DIAGNOSTIC, 106, -8.502367033659e-01, 3.131076644526e-04, 2.2372e-01, 1.4319e-03, + 2DIAGNOSTIC, 107, -8.520472805147e-01, 2.566312489822e-04, 2.2569e-01, 1.9670e-03, + 2DIAGNOSTIC, 108, -8.514894917957e-01, 1.830282653842e-04, 2.2719e-01, 1.5051e-03, + 2DIAGNOSTIC, 109, -8.536543099891e-01, 1.240409962503e-04, 2.2967e-01, 2.4779e-03, + 2DIAGNOSTIC, 110, -8.539263318831e-01, 1.029637404340e-04, 2.3116e-01, 1.4920e-03, + 2DIAGNOSTIC, 111, -8.560841718954e-01, 8.332790409610e-05, 2.3286e-01, 1.6980e-03, + 2DIAGNOSTIC, 112, -8.572243187584e-01, 6.940112410894e-05, 2.3439e-01, 1.5261e-03, + 2DIAGNOSTIC, 113, -8.577734682146e-01, 6.829305162648e-05, 2.3607e-01, 1.6851e-03, + 2DIAGNOSTIC, 114, -8.586660519874e-01, 7.060932427429e-05, 2.3826e-01, 2.1851e-03, + 2DIAGNOSTIC, 115, -8.589618037353e-01, 6.887043724535e-05, 2.3975e-01, 1.4961e-03, + 2DIAGNOSTIC, 116, -8.591959053712e-01, 6.248018195060e-05, 2.4127e-01, 1.5149e-03, + 2DIAGNOSTIC, 117, -8.596017945322e-01, 5.739810126277e-05, 2.4302e-01, 1.7471e-03, + 2DIAGNOSTIC, 118, -8.597503847069e-01, 4.544080015844e-05, 2.4495e-01, 1.9341e-03, + 2DIAGNOSTIC, 119, -8.598498096236e-01, 3.654068789059e-05, 2.4642e-01, 1.4660e-03, + 2DIAGNOSTIC, 120, -8.613310604973e-01, 2.963174249040e-05, 2.4810e-01, 1.6840e-03, + 2DIAGNOSTIC, 121, -8.650423702847e-01, 3.796719618714e-05, 2.4985e-01, 1.7459e-03, + 2DIAGNOSTIC, 122, -8.635923157931e-01, 4.125813452887e-05, 2.5133e-01, 1.4858e-03, + 2DIAGNOSTIC, 123, -8.642487585129e-01, 4.444043117476e-05, 2.5282e-01, 1.4930e-03, + 2DIAGNOSTIC, 124, -8.647379721253e-01, 4.749011012574e-05, 2.5458e-01, 1.7540e-03, + 2DIAGNOSTIC, 125, -8.644456143051e-01, 4.571597906129e-05, 2.5655e-01, 1.9691e-03, + 2DIAGNOSTIC, 126, -8.648529440828e-01, 4.132708439474e-05, 2.5803e-01, 1.4851e-03, + 2DIAGNOSTIC, 127, -8.655775985562e-01, 3.640795696729e-05, 2.5954e-01, 1.5111e-03, + 2DIAGNOSTIC, 128, -8.682359099017e-01, 3.634686102965e-05, 2.6157e-01, 2.0249e-03, + 2DIAGNOSTIC, 129, -8.728420119215e-01, 4.604504432316e-05, 2.6400e-01, 2.4290e-03, + 2DIAGNOSTIC, 130, -8.730128046094e-01, 5.527298962590e-05, 2.6575e-01, 1.7490e-03, + 2DIAGNOSTIC, 131, -8.733603387097e-01, 7.087137443668e-05, 2.6723e-01, 1.4791e-03, + 2DIAGNOSTIC, 132, -8.725704644326e-01, 7.315819202222e-05, 2.6872e-01, 1.4920e-03, + 2DIAGNOSTIC, 133, -8.727859192077e-01, 7.062878229851e-05, 2.7025e-01, 1.5361e-03, + 2DIAGNOSTIC, 134, -8.728797346445e-01, 6.272113047293e-05, 2.7175e-01, 1.4970e-03, + 2DIAGNOSTIC, 135, -8.729879651284e-01, 4.840213430166e-05, 2.7326e-01, 1.5042e-03, + 2DIAGNOSTIC, 136, -8.731873843552e-01, 3.152225124518e-05, 2.7497e-01, 1.7140e-03, + 2DIAGNOSTIC, 137, -8.732414594327e-01, 1.395269154301e-05, 2.7732e-01, 2.3470e-03, + 2DIAGNOSTIC, 138, -8.733146644178e-01, 2.286459227728e-06, 2.7886e-01, 1.5390e-03, + 2DIAGNOSTIC, 139, -8.733602032194e-01, 2.856007494339e-06, 2.8040e-01, 1.5421e-03, + 2DIAGNOSTIC, 140, -8.736231564718e-01, 4.251953082578e-06, 2.8262e-01, 2.2240e-03, + 2DIAGNOSTIC, 141, -8.738758783521e-01, 6.841588804811e-06, 2.8417e-01, 1.5521e-03, + 2DIAGNOSTIC, 142, -8.739284568996e-01, 6.828524385246e-06, 2.8570e-01, 1.5221e-03, + 2DIAGNOSTIC, 143, -8.739568770855e-01, 6.816643588904e-06, 2.8718e-01, 1.4830e-03, + 2DIAGNOSTIC, 144, -8.740046303467e-01, 6.532142446967e-06, 2.8965e-01, 2.4679e-03, + 2DIAGNOSTIC, 145, -8.740494400038e-01, 6.003267449895e-06, 2.9160e-01, 1.9560e-03, + 2DIAGNOSTIC, 146, -8.731764553442e-01, 3.227047658191e-06, 2.9401e-01, 2.4071e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.835680448472e-01, 1.797693134862e+308, 3.3984e-01, 4.5830e-02, + 2DIAGNOSTIC, 2, -4.830459132772e-01, 1.797693134862e+308, 3.4239e-01, 2.5520e-03, + 2DIAGNOSTIC, 3, -4.849077276848e-01, 1.797693134862e+308, 3.4507e-01, 2.6801e-03, + 2DIAGNOSTIC, 4, -4.868917669440e-01, 1.797693134862e+308, 3.4778e-01, 2.7082e-03, + 2DIAGNOSTIC, 5, -4.876639311287e-01, 1.797693134862e+308, 3.5000e-01, 2.2230e-03, + 2DIAGNOSTIC, 6, -4.889305228250e-01, 1.797693134862e+308, 3.5217e-01, 2.1720e-03, + 2DIAGNOSTIC, 7, -4.959051971946e-01, 1.797693134862e+308, 3.5426e-01, 2.0850e-03, + 2DIAGNOSTIC, 8, -5.043086292153e-01, 1.797693134862e+308, 3.5670e-01, 2.4362e-03, + 2DIAGNOSTIC, 9, -5.175565124926e-01, 1.797693134862e+308, 3.5909e-01, 2.3940e-03, + 2DIAGNOSTIC, 10, -5.213860014259e-01, 4.937073368609e-03, 3.6143e-01, 2.3370e-03, + 2DIAGNOSTIC, 11, -5.299576096329e-01, 5.663796016138e-03, 3.6402e-01, 2.5918e-03, + 2DIAGNOSTIC, 12, -5.542015641183e-01, 6.843644257371e-03, 3.6664e-01, 2.6181e-03, + 2DIAGNOSTIC, 13, -5.609423439742e-01, 7.542080774214e-03, 3.6963e-01, 2.9910e-03, + 2DIAGNOSTIC, 14, -5.666268540220e-01, 7.752641754948e-03, 3.7198e-01, 2.3558e-03, + 2DIAGNOSTIC, 15, -5.898397006391e-01, 8.099966880413e-03, 3.7435e-01, 2.3620e-03, + 2DIAGNOSTIC, 16, -6.003547000682e-01, 8.032136403673e-03, 3.7747e-01, 3.1228e-03, + 2DIAGNOSTIC, 17, -6.058104800819e-01, 7.617273543706e-03, 3.8260e-01, 5.1310e-03, + 2DIAGNOSTIC, 18, -6.058323438560e-01, 6.805375352593e-03, 3.8508e-01, 2.4850e-03, + 2DIAGNOSTIC, 19, -6.064344519701e-01, 5.862539259033e-03, 3.8751e-01, 2.4290e-03, + 2DIAGNOSTIC, 20, -6.074637363889e-01, 4.606508576029e-03, 3.8989e-01, 2.3789e-03, + 2DIAGNOSTIC, 21, -6.086130663692e-01, 3.279656014487e-03, 3.9220e-01, 2.3110e-03, + 2DIAGNOSTIC, 22, -6.094351668565e-01, 2.379240147670e-03, 3.9452e-01, 2.3201e-03, + 2DIAGNOSTIC, 23, -6.105566936982e-01, 1.527754852102e-03, 3.9684e-01, 2.3191e-03, + 2DIAGNOSTIC, 24, -6.164674909940e-01, 8.513528422368e-04, 3.9980e-01, 2.9600e-03, + 2DIAGNOSTIC, 25, -6.175052574846e-01, 6.453556733180e-04, 4.0208e-01, 2.2812e-03, + 2DIAGNOSTIC, 26, -6.179682934675e-01, 6.101599209028e-04, 4.0442e-01, 2.3339e-03, + 2DIAGNOSTIC, 27, -6.186587476550e-01, 6.383657202679e-04, 4.0706e-01, 2.6388e-03, + 2DIAGNOSTIC, 28, -6.204947187450e-01, 6.375459635821e-04, 4.1003e-01, 2.9690e-03, + 2DIAGNOSTIC, 29, -6.210147663635e-01, 5.938818540875e-04, 4.1305e-01, 3.0220e-03, + 2DIAGNOSTIC, 30, -6.213117892545e-01, 5.193439457706e-04, 4.1540e-01, 2.3530e-03, + 2DIAGNOSTIC, 31, -6.232555411695e-01, 4.527963198092e-04, 4.1817e-01, 2.7699e-03, + 2DIAGNOSTIC, 32, -6.234660577378e-01, 3.641503219137e-04, 4.2062e-01, 2.4550e-03, + 2DIAGNOSTIC, 33, -6.238807627038e-01, 2.677857948914e-04, 4.2306e-01, 2.4302e-03, + 2DIAGNOSTIC, 34, -6.245082072292e-01, 2.478355376545e-04, 4.2600e-01, 2.9480e-03, + 2DIAGNOSTIC, 35, -6.272662832967e-01, 2.594867565550e-04, 4.2919e-01, 3.1891e-03, + 2DIAGNOSTIC, 36, -6.283214932367e-01, 2.655368733354e-04, 4.3233e-01, 3.1371e-03, + 2DIAGNOSTIC, 37, -6.287086212252e-01, 2.599294480639e-04, 4.3509e-01, 2.7559e-03, + 2DIAGNOSTIC, 38, -6.287158041595e-01, 2.546341828676e-04, 4.3753e-01, 2.4459e-03, + 2DIAGNOSTIC, 39, -6.288887930968e-01, 2.344477656051e-04, 4.4056e-01, 3.0279e-03, + 2DIAGNOSTIC, 40, -6.291204761815e-01, 1.984023863849e-04, 4.4295e-01, 2.3940e-03, + 2DIAGNOSTIC, 41, -6.292841078246e-01, 1.702739200777e-04, 4.4594e-01, 2.9881e-03, + 2DIAGNOSTIC, 42, -6.295145507178e-01, 1.329266533603e-04, 4.4823e-01, 2.2929e-03, + 2DIAGNOSTIC, 43, -6.296531739211e-01, 9.145302728949e-05, 4.5053e-01, 2.2988e-03, + 2DIAGNOSTIC, 44, -6.299284955801e-01, 5.264158039399e-05, 4.5284e-01, 2.3031e-03, + 2DIAGNOSTIC, 45, -6.323885004286e-01, 6.663401999200e-05, 4.5634e-01, 3.5069e-03, + 2DIAGNOSTIC, 46, -6.328477980904e-01, 8.880741570610e-05, 4.5865e-01, 2.3060e-03, + 2DIAGNOSTIC, 47, -6.331708106536e-01, 1.090750268785e-04, 4.6101e-01, 2.3611e-03, + 2DIAGNOSTIC, 48, -6.342703957351e-01, 1.295276076650e-04, 4.6400e-01, 2.9919e-03, + 2DIAGNOSTIC, 49, -6.345882629376e-01, 1.412368272162e-04, 4.6638e-01, 2.3751e-03, + 2DIAGNOSTIC, 50, -6.352054948401e-01, 1.468264730762e-04, 4.6917e-01, 2.7950e-03, + 2DIAGNOSTIC, 51, -6.362011135938e-01, 1.489662022878e-04, 4.7343e-01, 4.2620e-03, + 2DIAGNOSTIC, 52, -6.362591706251e-01, 1.395865616720e-04, 4.7619e-01, 2.7521e-03, + 2DIAGNOSTIC, 53, -6.363199565360e-01, 1.193339006826e-04, 4.7894e-01, 2.7509e-03, + 2DIAGNOSTIC, 54, -6.363948927755e-01, 9.110906908207e-05, 4.8133e-01, 2.3949e-03, + 2DIAGNOSTIC, 55, -6.364872089765e-01, 7.741708235007e-05, 4.8401e-01, 2.6801e-03, + 2DIAGNOSTIC, 56, -6.365571123167e-01, 6.129609753406e-05, 4.8629e-01, 2.2819e-03, + 2DIAGNOSTIC, 57, -6.366183961593e-01, 4.298145189506e-05, 4.8860e-01, 2.3041e-03, + 2DIAGNOSTIC, 58, -6.366510403842e-01, 3.067687999504e-05, 4.9089e-01, 2.2919e-03, + 2DIAGNOSTIC, 59, -6.368591048334e-01, 2.012003072342e-05, 4.9350e-01, 2.6090e-03, + 2DIAGNOSTIC, 60, -6.370919403570e-01, 1.452477257609e-05, 4.9610e-01, 2.5990e-03, + 2DIAGNOSTIC, 61, -6.371435394742e-01, 1.589017451011e-05, 4.9902e-01, 2.9221e-03, + 2DIAGNOSTIC, 62, -6.374720979990e-01, 1.872060999236e-05, 5.0130e-01, 2.2790e-03, + 2DIAGNOSTIC, 63, -6.384547047507e-01, 2.750167304627e-05, 5.0417e-01, 2.8760e-03, + 2DIAGNOSTIC, 64, -6.391029407679e-01, 3.853071962927e-05, 5.0770e-01, 3.5219e-03, + 2DIAGNOSTIC, 65, -6.392350907583e-01, 4.712379176925e-05, 5.0996e-01, 2.2621e-03, + 2DIAGNOSTIC, 66, -6.396980342243e-01, 5.490294555548e-05, 5.1264e-01, 2.6829e-03, + 2DIAGNOSTIC, 67, -6.399009995512e-01, 5.902346602879e-05, 5.1505e-01, 2.4090e-03, + 2DIAGNOSTIC, 68, -6.402767025255e-01, 6.006705583301e-05, 5.1739e-01, 2.3410e-03, + 2DIAGNOSTIC, 69, -6.407069127629e-01, 5.958305938756e-05, 5.2089e-01, 3.4940e-03, + 2DIAGNOSTIC, 70, -6.408069090813e-01, 5.570898435348e-05, 5.2315e-01, 2.2681e-03, + 2DIAGNOSTIC, 71, -6.408006312675e-01, 4.701112368613e-05, 5.2539e-01, 2.2330e-03, + 2DIAGNOSTIC, 72, -6.408640442623e-01, 3.653391270901e-05, 5.2768e-01, 2.2922e-03, + 2DIAGNOSTIC, 73, -6.409603552806e-01, 2.970098697851e-05, 5.3011e-01, 2.4312e-03, + 2DIAGNOSTIC, 74, -6.412832228691e-01, 2.635906231315e-05, 5.3300e-01, 2.8899e-03, + 2DIAGNOSTIC, 75, -6.412586757626e-01, 2.119161278366e-05, 5.3561e-01, 2.6119e-03, + 2DIAGNOSTIC, 76, -6.414198429840e-01, 1.808173903416e-05, 5.3947e-01, 3.8540e-03, + 2DIAGNOSTIC, 77, -6.415418797670e-01, 1.529956769865e-05, 5.4179e-01, 2.3241e-03, + 2DIAGNOSTIC, 78, -6.415730721712e-01, 1.349977924577e-05, 5.4438e-01, 2.5890e-03, + 2DIAGNOSTIC, 79, -6.415906373321e-01, 1.310855860879e-05, 5.4671e-01, 2.3310e-03, + 2DIAGNOSTIC, 80, -6.415478163823e-01, 1.185432451785e-05, 5.4926e-01, 2.5470e-03, + 2DIAGNOSTIC, 81, -6.415533776578e-01, 9.544547925781e-06, 5.5155e-01, 2.2922e-03, + 2DIAGNOSTIC, 82, -6.415019614556e-01, 6.466741368161e-06, 5.5382e-01, 2.2721e-03, + 2DIAGNOSTIC, 83, -6.415120135850e-01, 3.438863332638e-06, 5.5619e-01, 2.3730e-03, + 2DIAGNOSTIC, 84, -6.414710882499e-01, 1.776320161117e-06, 5.5849e-01, 2.2988e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.955481576270e-01, 1.797693134862e+308, 6.2613e-01, 6.7640e-02, + 2DIAGNOSTIC, 2, -4.959506966561e-01, 1.797693134862e+308, 6.3847e-01, 1.2341e-02, + 2DIAGNOSTIC, 3, -4.964138632260e-01, 1.797693134862e+308, 6.5033e-01, 1.1852e-02, + 2DIAGNOSTIC, 4, -4.967090748531e-01, 1.797693134862e+308, 6.6211e-01, 1.1780e-02, + 2DIAGNOSTIC, 5, -4.971551663275e-01, 1.797693134862e+308, 6.7524e-01, 1.3130e-02, + 2DIAGNOSTIC, 6, -4.974294532329e-01, 1.797693134862e+308, 6.8608e-01, 1.0847e-02, + 2DIAGNOSTIC, 7, -4.975513608716e-01, 1.797693134862e+308, 6.9658e-01, 1.0492e-02, + 2DIAGNOSTIC, 8, -4.976872703739e-01, 1.797693134862e+308, 7.1147e-01, 1.4891e-02, + 2DIAGNOSTIC, 9, -4.977483530333e-01, 1.797693134862e+308, 7.2200e-01, 1.0538e-02, + 2DIAGNOSTIC, 10, -4.978072853336e-01, 2.983810422297e-04, 7.3581e-01, 1.3803e-02, + 2DIAGNOSTIC, 11, -4.978410643424e-01, 2.163131322038e-04, 7.4779e-01, 1.1978e-02, + 2DIAGNOSTIC, 12, -4.978731044675e-01, 1.492591056198e-04, 7.5861e-01, 1.0821e-02, + 2DIAGNOSTIC, 13, -4.979087555151e-01, 1.011821077197e-04, 7.7216e-01, 1.3549e-02, + 2DIAGNOSTIC, 14, -4.979126434520e-01, 6.284501755480e-05, 7.8404e-01, 1.1885e-02, + 2DIAGNOSTIC, 15, -4.979402288322e-01, 4.196520811463e-05, 7.9453e-01, 1.0485e-02, + 2DIAGNOSTIC, 16, -4.979463381146e-01, 2.999088948683e-05, 8.0661e-01, 1.2086e-02, + 2DIAGNOSTIC, 17, -4.979477270607e-01, 2.090025148732e-05, 8.1709e-01, 1.0474e-02, + 2DIAGNOSTIC, 18, -4.979709856872e-01, 1.609207006064e-05, 8.2886e-01, 1.1771e-02, + 2DIAGNOSTIC, 19, -4.979983009669e-01, 1.307301996958e-05, 8.4145e-01, 1.2595e-02, + 2DIAGNOSTIC, 20, -4.981439188751e-01, 1.511187385318e-05, 8.5860e-01, 1.7150e-02, + 2DIAGNOSTIC, 21, -4.981796316385e-01, 1.747588275633e-05, 8.7155e-01, 1.2950e-02, + 2DIAGNOSTIC, 22, -4.981892461089e-01, 1.922968097639e-05, 8.8390e-01, 1.2353e-02, + 2DIAGNOSTIC, 23, -4.981902592649e-01, 2.013603352487e-05, 8.9491e-01, 1.1007e-02, + 2DIAGNOSTIC, 24, -4.981875960375e-01, 1.921155074423e-05, 9.0530e-01, 1.0393e-02, + 2DIAGNOSTIC, 25, -4.981908695577e-01, 1.733589408170e-05, 9.1556e-01, 1.0260e-02, + 2DIAGNOSTIC, 26, -4.982019681754e-01, 1.445864855903e-05, 9.3067e-01, 1.5104e-02, + 2DIAGNOSTIC, 27, -4.982033399235e-01, 1.063662848242e-05, 9.4187e-01, 1.1198e-02, + 2DIAGNOSTIC, 28, -4.982002420867e-01, 6.640949972526e-06, 9.5277e-01, 1.0903e-02, + 2DIAGNOSTIC, 29, -4.981976752112e-01, 2.824211441904e-06, 9.6225e-01, 9.4762e-03, + 2DIAGNOSTIC, 30, -4.981963279330e-01, 1.827539795336e-06, 9.7169e-01, 9.4430e-03, + 2DIAGNOSTIC, 31, -4.981971780741e-01, 1.485972984834e-06, 9.8252e-01, 1.0827e-02, + 2DIAGNOSTIC, 32, -4.982034688510e-01, 1.403536418594e-06, 9.9201e-01, 9.4919e-03, + 2DIAGNOSTIC, 33, -4.982052826956e-01, 1.339064525381e-06, 1.0016e+00, 9.6169e-03, + 2DIAGNOSTIC, 34, -4.982269512905e-01, 1.564686794277e-06, 1.0115e+00, 9.8739e-03, + 2DIAGNOSTIC, 35, -4.982508153227e-01, 2.147028681933e-06, 1.0216e+00, 1.0113e-02, + 2DIAGNOSTIC, 36, -4.982816721730e-01, 3.236059808676e-06, 1.0315e+00, 9.9010e-03, + 2DIAGNOSTIC, 37, -4.983102267064e-01, 4.499139674267e-06, 1.0521e+00, 2.0568e-02, + 2DIAGNOSTIC, 38, -4.983266995324e-01, 5.548255659862e-06, 1.0633e+00, 1.1200e-02, + 2DIAGNOSTIC, 39, -4.983210041951e-01, 5.974614312409e-06, 1.0759e+00, 1.2623e-02, + 2DIAGNOSTIC, 40, -4.983172648680e-01, 5.819507106406e-06, 1.0873e+00, 1.1375e-02, + 2DIAGNOSTIC, 41, -4.983178249305e-01, 5.209219449867e-06, 1.0973e+00, 1.0043e-02, + 2DIAGNOSTIC, 42, -4.983140520128e-01, 4.236072485890e-06, 1.1074e+00, 1.0099e-02, + 2DIAGNOSTIC, 43, -4.983192407160e-01, 3.067035341604e-06, 1.1173e+00, 9.9010e-03, + 2DIAGNOSTIC, 44, -4.983293926287e-01, 2.141808584551e-06, 1.1270e+00, 9.7029e-03, + 2DIAGNOSTIC, 45, -4.983408970352e-01, 1.564656560343e-06, 1.1368e+00, 9.7780e-03, + 2DIAGNOSTIC, 46, -4.983519545872e-01, 1.440567092136e-06, 1.1467e+00, 9.8720e-03, + 2DIAGNOSTIC, 47, -4.983731617402e-01, 1.847479021211e-06, 1.1576e+00, 1.0939e-02, + 2DIAGNOSTIC, 48, -4.983865776372e-01, 2.477552118928e-06, 1.1686e+00, 1.1012e-02, + 2DIAGNOSTIC, 49, -4.983861168573e-01, 2.834829001434e-06, 1.1822e+00, 1.3602e-02, + 2DIAGNOSTIC, 50, -4.983834419253e-01, 2.898206201540e-06, 1.1988e+00, 1.6578e-02, + 2DIAGNOSTIC, 51, -4.983839936657e-01, 2.758214031069e-06, 1.2085e+00, 9.6741e-03, + 2DIAGNOSTIC, 52, -4.983858229485e-01, 2.393784561548e-06, 1.2181e+00, 9.6631e-03, + 2DIAGNOSTIC, 53, -4.983867381675e-01, 1.933939790345e-06, 1.2278e+00, 9.6650e-03, + 2DIAGNOSTIC, 54, -4.983925893037e-01, 1.533560917675e-06, 1.2375e+00, 9.6970e-03, + 2DIAGNOSTIC, 55, -4.983890717719e-01, 1.140758677423e-06, 1.2483e+00, 1.0773e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.146694219782e-01, 1.797693134862e+308, 1.4163e+00, 1.6805e-01, + Elapsed time (stage 0): 1.4464e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.997434433815e-01, 1.797693134862e+308, 3.6792e-02, 3.6792e-02, + 2DIAGNOSTIC, 2, -1.003334081817e+00, 1.797693134862e+308, 3.8244e-02, 1.4520e-03, + 2DIAGNOSTIC, 3, -1.010284151311e+00, 1.797693134862e+308, 3.9490e-02, 1.2460e-03, + 2DIAGNOSTIC, 4, -1.018890334650e+00, 1.797693134862e+308, 4.0670e-02, 1.1799e-03, + 2DIAGNOSTIC, 5, -1.029784017391e+00, 1.797693134862e+308, 4.1904e-02, 1.2341e-03, + 2DIAGNOSTIC, 6, -1.046100390873e+00, 1.797693134862e+308, 4.3152e-02, 1.2481e-03, + 2DIAGNOSTIC, 7, -1.057979296772e+00, 1.797693134862e+308, 4.4429e-02, 1.2770e-03, + 2DIAGNOSTIC, 8, -1.069534901301e+00, 1.797693134862e+308, 4.6101e-02, 1.6720e-03, + 2DIAGNOSTIC, 9, -1.072272788753e+00, 1.797693134862e+308, 4.7326e-02, 1.2250e-03, + 2DIAGNOSTIC, 10, -1.084045240334e+00, 5.666417647953e-03, 4.9147e-02, 1.8210e-03, + 2DIAGNOSTIC, 11, -1.098573046148e+00, 5.386962271026e-03, 5.0524e-02, 1.3771e-03, + 2DIAGNOSTIC, 12, -1.112580506583e+00, 5.057047445522e-03, 5.1824e-02, 1.2999e-03, + 2DIAGNOSTIC, 13, -1.133161193656e+00, 4.886748621328e-03, 5.3572e-02, 1.7481e-03, + 2DIAGNOSTIC, 14, -1.148167568450e+00, 4.743024792077e-03, 5.4920e-02, 1.3480e-03, + 2DIAGNOSTIC, 15, -1.153315761239e+00, 4.466073500066e-03, 5.7321e-02, 2.4011e-03, + 2DIAGNOSTIC, 16, -1.151918296655e+00, 4.063777947532e-03, 5.8699e-02, 1.3781e-03, + 2DIAGNOSTIC, 17, -1.152416073241e+00, 3.529371698622e-03, 5.9988e-02, 1.2891e-03, + 2DIAGNOSTIC, 18, -1.154243625163e+00, 2.926848639595e-03, 6.1327e-02, 1.3390e-03, + 2DIAGNOSTIC, 19, -1.155888516635e+00, 2.176853952577e-03, 6.2873e-02, 1.5461e-03, + 2DIAGNOSTIC, 20, -1.156769472186e+00, 1.468854435707e-03, 6.4159e-02, 1.2858e-03, + 2DIAGNOSTIC, 21, -1.157450188965e+00, 8.855391416432e-04, 6.5520e-02, 1.3611e-03, + 2DIAGNOSTIC, 22, -1.159763468001e+00, 4.643779377418e-04, 6.7519e-02, 1.9989e-03, + 2DIAGNOSTIC, 23, -1.160911247592e+00, 2.775415961763e-04, 6.9074e-02, 1.5550e-03, + 2DIAGNOSTIC, 24, -1.158735841457e+00, 2.171656712739e-04, 7.0475e-02, 1.4009e-03, + 2DIAGNOSTIC, 25, -1.159481597909e+00, 2.040248566854e-04, 7.1822e-02, 1.3471e-03, + 2DIAGNOSTIC, 26, -1.160308123303e+00, 1.670949826345e-04, 7.3391e-02, 1.5690e-03, + 2DIAGNOSTIC, 27, -1.156634924687e+00, 8.620869546933e-05, 7.5557e-02, 2.1660e-03, + 2DIAGNOSTIC, 28, -1.157860528334e+00, 3.200739931280e-05, 7.7910e-02, 2.3530e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.445454761196e-01, 1.797693134862e+308, 1.2150e-01, 4.3593e-02, + 2DIAGNOSTIC, 2, -7.445725661974e-01, 1.797693134862e+308, 1.2413e-01, 2.6269e-03, + 2DIAGNOSTIC, 3, -7.465868953011e-01, 1.797693134862e+308, 1.2677e-01, 2.6371e-03, + 2DIAGNOSTIC, 4, -7.498804942770e-01, 1.797693134862e+308, 1.2933e-01, 2.5640e-03, + 2DIAGNOSTIC, 5, -7.557641097791e-01, 1.797693134862e+308, 1.3168e-01, 2.3482e-03, + 2DIAGNOSTIC, 6, -7.666137783731e-01, 1.797693134862e+308, 1.3385e-01, 2.1739e-03, + 2DIAGNOSTIC, 7, -7.739357784023e-01, 1.797693134862e+308, 1.3605e-01, 2.1920e-03, + 2DIAGNOSTIC, 8, -7.808593092837e-01, 1.797693134862e+308, 1.3865e-01, 2.6000e-03, + 2DIAGNOSTIC, 9, -7.834183767163e-01, 1.797693134862e+308, 1.4189e-01, 3.2439e-03, + 2DIAGNOSTIC, 10, -7.848623095304e-01, 4.149891292639e-03, 1.4468e-01, 2.7931e-03, + 2DIAGNOSTIC, 11, -7.857233273633e-01, 3.753121786782e-03, 1.4867e-01, 3.9840e-03, + 2DIAGNOSTIC, 12, -7.858981742793e-01, 3.092372519198e-03, 1.5101e-01, 2.3420e-03, + 2DIAGNOSTIC, 13, -7.860810479991e-01, 2.320445462156e-03, 1.5333e-01, 2.3170e-03, + 2DIAGNOSTIC, 14, -7.864833061721e-01, 1.548859410698e-03, 1.5597e-01, 2.6410e-03, + 2DIAGNOSTIC, 15, -7.864059232710e-01, 8.802215008188e-04, 1.5854e-01, 2.5730e-03, + 2DIAGNOSTIC, 16, -7.864525990748e-01, 4.649338542509e-04, 1.6102e-01, 2.4769e-03, + 2DIAGNOSTIC, 17, -7.864835609139e-01, 2.127405627305e-04, 1.6349e-01, 2.4769e-03, + 2DIAGNOSTIC, 18, -7.864789960998e-01, 1.098461520808e-04, 1.6600e-01, 2.5039e-03, + 2DIAGNOSTIC, 19, -7.864933415677e-01, 5.702266763751e-05, 1.6851e-01, 2.5179e-03, + 2DIAGNOSTIC, 20, -7.864311596641e-01, 2.940535003314e-05, 1.7076e-01, 2.2471e-03, + 2DIAGNOSTIC, 21, -7.864120106456e-01, 1.665339715882e-05, 1.7302e-01, 2.2600e-03, + 2DIAGNOSTIC, 22, -7.865894549899e-01, 9.494153297374e-06, 1.7563e-01, 2.6090e-03, + 2DIAGNOSTIC, 23, -7.868255998093e-01, 8.596674201167e-06, 1.7820e-01, 2.5661e-03, + 2DIAGNOSTIC, 24, -7.871125324265e-01, 1.758352457861e-05, 1.8081e-01, 2.6121e-03, + 2DIAGNOSTIC, 25, -7.873237938146e-01, 2.624029677688e-05, 1.8307e-01, 2.2571e-03, + 2DIAGNOSTIC, 26, -7.875934876738e-01, 3.633058425625e-05, 1.8526e-01, 2.1951e-03, + 2DIAGNOSTIC, 27, -7.884110469466e-01, 5.377182633381e-05, 1.8814e-01, 2.8751e-03, + 2DIAGNOSTIC, 28, -7.893423749920e-01, 7.676521366691e-05, 1.9224e-01, 4.1020e-03, + 2DIAGNOSTIC, 29, -7.894323980690e-01, 9.214452471702e-05, 1.9465e-01, 2.4078e-03, + 2DIAGNOSTIC, 30, -7.894523295683e-01, 9.764524303720e-05, 1.9698e-01, 2.3320e-03, + 2DIAGNOSTIC, 31, -7.894674981414e-01, 9.371633550363e-05, 1.9919e-01, 2.2120e-03, + 2DIAGNOSTIC, 32, -7.894470150096e-01, 8.285305310737e-05, 2.0167e-01, 2.4819e-03, + 2DIAGNOSTIC, 33, -7.894368411805e-01, 6.717762377188e-05, 2.0418e-01, 2.5058e-03, + 2DIAGNOSTIC, 34, -7.894153696643e-01, 4.905736434305e-05, 2.0645e-01, 2.2759e-03, + 2DIAGNOSTIC, 35, -7.893516627949e-01, 2.912358108517e-05, 2.0866e-01, 2.2020e-03, + 2DIAGNOSTIC, 36, -7.893161706247e-01, 9.898930109588e-06, 2.1096e-01, 2.3019e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.915701244282e-01, 1.797693134862e+308, 2.6942e-01, 5.8458e-02, + 2DIAGNOSTIC, 2, -5.920979063478e-01, 1.797693134862e+308, 2.8073e-01, 1.1311e-02, + 2DIAGNOSTIC, 3, -5.929719702973e-01, 1.797693134862e+308, 2.9190e-01, 1.1172e-02, + 2DIAGNOSTIC, 4, -5.941452548980e-01, 1.797693134862e+308, 3.0308e-01, 1.1186e-02, + 2DIAGNOSTIC, 5, -5.957924373224e-01, 1.797693134862e+308, 3.1429e-01, 1.1209e-02, + 2DIAGNOSTIC, 6, -5.972383068592e-01, 1.797693134862e+308, 3.2512e-01, 1.0823e-02, + 2DIAGNOSTIC, 7, -5.988221889706e-01, 1.797693134862e+308, 3.3792e-01, 1.2804e-02, + 2DIAGNOSTIC, 8, -6.005464278049e-01, 1.797693134862e+308, 3.5754e-01, 1.9620e-02, + 2DIAGNOSTIC, 9, -6.005987703513e-01, 1.797693134862e+308, 3.7008e-01, 1.2543e-02, + 2DIAGNOSTIC, 10, -6.009321636637e-01, 1.171954409415e-03, 3.8266e-01, 1.2574e-02, + 2DIAGNOSTIC, 11, -6.013007275785e-01, 1.005767936368e-03, 3.9402e-01, 1.1364e-02, + 2DIAGNOSTIC, 12, -6.017531720566e-01, 8.152931582798e-04, 4.0542e-01, 1.1395e-02, + 2DIAGNOSTIC, 13, -6.024956968481e-01, 6.390226340449e-04, 4.1675e-01, 1.1336e-02, + 2DIAGNOSTIC, 14, -6.037079156786e-01, 5.104759685208e-04, 4.2849e-01, 1.1733e-02, + 2DIAGNOSTIC, 15, -6.043705535094e-01, 4.253157874003e-04, 4.4339e-01, 1.4901e-02, + 2DIAGNOSTIC, 16, -6.045915478305e-01, 3.607957725266e-04, 4.5483e-01, 1.1440e-02, + 2DIAGNOSTIC, 17, -6.049291416894e-01, 3.235730243983e-04, 4.6602e-01, 1.1192e-02, + 2DIAGNOSTIC, 18, -6.055105256554e-01, 3.213476884557e-04, 4.8402e-01, 1.8004e-02, + 2DIAGNOSTIC, 19, -6.056811963633e-01, 2.945082435226e-04, 4.9503e-01, 1.1011e-02, + 2DIAGNOSTIC, 20, -6.057834937927e-01, 2.534466064591e-04, 5.0738e-01, 1.2343e-02, + 2DIAGNOSTIC, 21, -6.057964486079e-01, 2.018576455338e-04, 5.1761e-01, 1.0232e-02, + 2DIAGNOSTIC, 22, -6.058024014927e-01, 1.461380839496e-04, 5.2934e-01, 1.1736e-02, + 2DIAGNOSTIC, 23, -6.058071863813e-01, 9.645364047439e-05, 5.3959e-01, 1.0243e-02, + 2DIAGNOSTIC, 24, -6.058265840709e-01, 6.597663011626e-05, 5.5342e-01, 1.3831e-02, + 2DIAGNOSTIC, 25, -6.058301394377e-01, 4.456513575558e-05, 5.6441e-01, 1.0991e-02, + 2DIAGNOSTIC, 26, -6.058258524397e-01, 2.467526377416e-05, 5.7550e-01, 1.1095e-02, + 2DIAGNOSTIC, 27, -6.058305907178e-01, 9.829236135218e-06, 5.8658e-01, 1.1076e-02, + 2DIAGNOSTIC, 28, -6.058298679501e-01, 4.965578905954e-06, 5.9782e-01, 1.1239e-02, + 2DIAGNOSTIC, 29, -6.058312335562e-01, 2.830090808703e-06, 6.0912e-01, 1.1303e-02, + 2DIAGNOSTIC, 30, -6.058264823703e-01, 2.204637329785e-06, 6.1924e-01, 1.0119e-02, + 2DIAGNOSTIC, 31, -6.058277981041e-01, 1.735211147900e-06, 6.3019e-01, 1.0949e-02, + 2DIAGNOSTIC, 32, -6.058303542679e-01, 1.354473446992e-06, 6.4322e-01, 1.3027e-02, + 2DIAGNOSTIC, 33, -6.058293981363e-01, 1.007624487667e-06, 6.5448e-01, 1.1262e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.046040460495e-01, 1.797693134862e+308, 8.3490e-01, 1.8042e-01, + Elapsed time (stage 1): 8.5559e-01 + + +Total elapsed time: 2.3031e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:48:05 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 54 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 107 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 91.02% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 91.02% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[11255 4971 2413 1196 7814 7869 701 2376 620 207 225 876 + 641 0 195 357 173 0 0 0 0 0 177 0 + 0 0 0 220 169 0 0 0 0 0 0 0 + 0 0 0 0 220 0 0 0 0 0 0 0 + 0 0 0 0 0 0] +[157674 46764 55626 32535 54104 18288 20589 20248 25471 21395 + 18067 20280 11353 15237 10602 8650 11572 10859 3630 10174 + 4072 10844 2136 3488 1433 4350 3133 6477 1109 1595 + 1898 1368 284 1390 693 519 1035 188 1001 1311 + 1025 765 871 677 329 794 579 996 0 843 + 244 510 0 378] +[ 0 2750 228 7694 0 7836 11156 0 0 0 855 0 + 0 0 170 411 0 0 225 0 0 0 0 0 + 556 499 177 189 0 0 0 9725 0 278 13525 0 + 166 0 0 0 11194 0 0 0 0 337 0 0 + 0 0 405 0 0 0] +[ 2236 280 52958 393 6873 105662 352 2344 2903 0 + 902 0 1501 1942 998 2965 687 1584 0 958 + 746 947 0 15410 9508 13216 816 2486 2332 1069 + 1695 127243 1700 5999 173 1525 14942 508 605 0 + 4727 8053 1247 10984 1233 12958 2353 1338 4571 2645 + 11617 4997 4264 1147] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:58:19 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:58:22 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:05 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:05 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:05 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:15 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:18 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC009 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:52 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:03:17 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:05:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:05:10 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:06:28 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:06:29 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x561aed33ed20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.7585, 116.949, -137.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x561aed1b5730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f40255fd010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x561aed342020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.068, 45.3436, -128.223] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x561aed3480c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4021f3e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x561aed358840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.7585, 116.949, -137.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x561aed344890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f401d26a010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x561aed35c3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.068, 45.3436, -128.223] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x561aed34b130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4019bab010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.322003314077e-01, 1.797693134862e+308, 2.3007e-01, 2.3007e-01, + 2DIAGNOSTIC, 2, -4.349814593447e-01, 1.797693134862e+308, 2.3130e-01, 1.2259e-03, + 2DIAGNOSTIC, 3, -4.362036959301e-01, 1.797693134862e+308, 2.3252e-01, 1.2269e-03, + 2DIAGNOSTIC, 4, -4.389940863418e-01, 1.797693134862e+308, 2.3374e-01, 1.2169e-03, + 2DIAGNOSTIC, 5, -4.437852938041e-01, 1.797693134862e+308, 2.3497e-01, 1.2269e-03, + 2DIAGNOSTIC, 6, -4.603945021179e-01, 1.797693134862e+308, 2.3662e-01, 1.6520e-03, + 2DIAGNOSTIC, 7, -4.668389665759e-01, 1.797693134862e+308, 2.3782e-01, 1.1969e-03, + 2DIAGNOSTIC, 8, -4.686948982923e-01, 1.797693134862e+308, 2.3905e-01, 1.2369e-03, + 2DIAGNOSTIC, 9, -4.714847120451e-01, 1.797693134862e+308, 2.4041e-01, 1.3571e-03, + 2DIAGNOSTIC, 10, -4.958601260390e-01, 8.380879524426e-03, 2.4291e-01, 2.5001e-03, + 2DIAGNOSTIC, 11, -4.993522076518e-01, 8.558838300224e-03, 2.4470e-01, 1.7922e-03, + 2DIAGNOSTIC, 12, -5.028755784550e-01, 8.267957762976e-03, 2.4663e-01, 1.9321e-03, + 2DIAGNOSTIC, 13, -5.053602688768e-01, 7.479491925270e-03, 2.4830e-01, 1.6630e-03, + 2DIAGNOSTIC, 14, -5.078935586989e-01, 6.367716050207e-03, 2.5040e-01, 2.1029e-03, + 2DIAGNOSTIC, 15, -5.095935165945e-01, 5.065646838007e-03, 2.5206e-01, 1.6620e-03, + 2DIAGNOSTIC, 16, -5.127244957640e-01, 4.204889408761e-03, 2.5444e-01, 2.3739e-03, + 2DIAGNOSTIC, 17, -5.106029650426e-01, 3.229978430014e-03, 2.5606e-01, 1.6282e-03, + 2DIAGNOSTIC, 18, -5.124063329885e-01, 2.205020803372e-03, 2.5791e-01, 1.8420e-03, + 2DIAGNOSTIC, 19, -5.130453885655e-01, 1.177237265442e-03, 2.5980e-01, 1.8890e-03, + 2DIAGNOSTIC, 20, -5.130814797022e-01, 8.671201676236e-04, 2.6173e-01, 1.9350e-03, + 2DIAGNOSTIC, 21, -5.131211764999e-01, 6.056235823493e-04, 2.6321e-01, 1.4760e-03, + 2DIAGNOSTIC, 22, -5.131542172683e-01, 4.082222146384e-04, 2.6499e-01, 1.7788e-03, + 2DIAGNOSTIC, 23, -5.133244221603e-01, 2.578506808272e-04, 2.6670e-01, 1.7109e-03, + 2DIAGNOSTIC, 24, -5.154199431754e-01, 2.075807360284e-04, 2.6815e-01, 1.4548e-03, + 2DIAGNOSTIC, 25, -5.131409582976e-01, 1.253739707145e-04, 2.7007e-01, 1.9162e-03, + 2DIAGNOSTIC, 26, -5.128335706292e-01, 1.054019749837e-04, 2.7155e-01, 1.4861e-03, + 2DIAGNOSTIC, 27, -5.128530872432e-01, 3.140441123259e-05, 2.7302e-01, 1.4648e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.739436284615e-01, 1.797693134862e+308, 5.0861e-01, 2.3559e-01, + 2DIAGNOSTIC, 2, -3.722067242646e-01, 1.797693134862e+308, 5.1065e-01, 2.0330e-03, + 2DIAGNOSTIC, 3, -3.724701938722e-01, 1.797693134862e+308, 5.1304e-01, 2.3911e-03, + 2DIAGNOSTIC, 4, -3.727318656100e-01, 1.797693134862e+308, 5.1516e-01, 2.1241e-03, + 2DIAGNOSTIC, 5, -3.728217863434e-01, 1.797693134862e+308, 5.1728e-01, 2.1169e-03, + 2DIAGNOSTIC, 6, -3.732361014547e-01, 1.797693134862e+308, 5.1944e-01, 2.1620e-03, + 2DIAGNOSTIC, 7, -3.737858868299e-01, 1.797693134862e+308, 5.2159e-01, 2.1491e-03, + 2DIAGNOSTIC, 8, -3.750444401187e-01, 1.797693134862e+308, 5.2407e-01, 2.4819e-03, + 2DIAGNOSTIC, 9, -3.759114172637e-01, 1.797693134862e+308, 5.2622e-01, 2.1441e-03, + 2DIAGNOSTIC, 10, -3.822779323123e-01, 1.061131672213e-03, 5.2902e-01, 2.8059e-03, + 2DIAGNOSTIC, 11, -3.889808835639e-01, 1.976426290343e-03, 5.3178e-01, 2.7580e-03, + 2DIAGNOSTIC, 12, -3.951140912865e-01, 2.822774108618e-03, 5.3458e-01, 2.8040e-03, + 2DIAGNOSTIC, 13, -3.963264807089e-01, 3.362951331502e-03, 5.3746e-01, 2.8720e-03, + 2DIAGNOSTIC, 14, -4.078643505398e-01, 4.145877929159e-03, 5.4030e-01, 2.8410e-03, + 2DIAGNOSTIC, 15, -4.175676935683e-01, 4.900966784978e-03, 5.4403e-01, 3.7370e-03, + 2DIAGNOSTIC, 16, -4.184303812436e-01, 5.152982931241e-03, 5.4676e-01, 2.7299e-03, + 2DIAGNOSTIC, 17, -4.178233691289e-01, 4.908857196575e-03, 5.4940e-01, 2.6410e-03, + 2DIAGNOSTIC, 18, -4.186821899123e-01, 4.338460257193e-03, 5.5169e-01, 2.2838e-03, + 2DIAGNOSTIC, 19, -4.191081138265e-01, 3.471665840050e-03, 5.5431e-01, 2.6169e-03, + 2DIAGNOSTIC, 20, -4.208663303731e-01, 2.658424571486e-03, 5.5671e-01, 2.4068e-03, + 2DIAGNOSTIC, 21, -4.304966102231e-01, 2.238497152428e-03, 5.5949e-01, 2.7750e-03, + 2DIAGNOSTIC, 22, -4.369481922761e-01, 2.062030450057e-03, 5.6303e-01, 3.5400e-03, + 2DIAGNOSTIC, 23, -4.410393343146e-01, 1.866526464586e-03, 5.6537e-01, 2.3470e-03, + 2DIAGNOSTIC, 24, -4.430126042770e-01, 1.909532635342e-03, 5.6774e-01, 2.3670e-03, + 2DIAGNOSTIC, 25, -4.475034609053e-01, 2.171533050582e-03, 5.7021e-01, 2.4738e-03, + 2DIAGNOSTIC, 26, -4.556007697737e-01, 2.443463009598e-03, 5.7267e-01, 2.4569e-03, + 2DIAGNOSTIC, 27, -4.607990558131e-01, 2.574023371445e-03, 5.7761e-01, 4.9419e-03, + 2DIAGNOSTIC, 28, -4.613566472399e-01, 2.489851636947e-03, 5.8042e-01, 2.8031e-03, + 2DIAGNOSTIC, 29, -4.627699900455e-01, 2.228760262289e-03, 5.8353e-01, 3.1109e-03, + 2DIAGNOSTIC, 30, -4.635232642337e-01, 1.830743211890e-03, 5.8619e-01, 2.6610e-03, + 2DIAGNOSTIC, 31, -4.654191233434e-01, 1.538470654716e-03, 5.8892e-01, 2.7270e-03, + 2DIAGNOSTIC, 32, -4.684225747549e-01, 1.320166164139e-03, 5.9244e-01, 3.5200e-03, + 2DIAGNOSTIC, 33, -4.725220388438e-01, 1.161970859367e-03, 5.9555e-01, 3.1159e-03, + 2DIAGNOSTIC, 34, -4.757311993627e-01, 1.007295036443e-03, 5.9863e-01, 3.0782e-03, + 2DIAGNOSTIC, 35, -4.785023228263e-01, 9.040971400172e-04, 6.0140e-01, 2.7730e-03, + 2DIAGNOSTIC, 36, -4.792703964502e-01, 8.851042590646e-04, 6.0509e-01, 3.6910e-03, + 2DIAGNOSTIC, 37, -4.799582983401e-01, 8.902466917360e-04, 6.0785e-01, 2.7599e-03, + 2DIAGNOSTIC, 38, -4.806774697983e-01, 8.320918689686e-04, 6.1046e-01, 2.6078e-03, + 2DIAGNOSTIC, 39, -4.810011034761e-01, 7.275180247174e-04, 6.1378e-01, 3.3221e-03, + 2DIAGNOSTIC, 40, -4.813676338550e-01, 5.782970488911e-04, 6.1644e-01, 2.6550e-03, + 2DIAGNOSTIC, 41, -4.822794205812e-01, 4.275601184678e-04, 6.1884e-01, 2.3980e-03, + 2DIAGNOSTIC, 42, -4.856620367694e-01, 3.435300417770e-04, 6.2248e-01, 3.6461e-03, + 2DIAGNOSTIC, 43, -4.863994398400e-01, 3.031190541372e-04, 6.2485e-01, 2.3692e-03, + 2DIAGNOSTIC, 44, -4.869360596345e-01, 2.913203501966e-04, 6.2721e-01, 2.3611e-03, + 2DIAGNOSTIC, 45, -4.875322770021e-01, 3.018931014845e-04, 6.2954e-01, 2.3220e-03, + 2DIAGNOSTIC, 46, -4.913711457970e-01, 3.480437506481e-04, 6.3184e-01, 2.3010e-03, + 2DIAGNOSTIC, 47, -4.927320473523e-01, 3.848519902131e-04, 6.3407e-01, 2.2290e-03, + 2DIAGNOSTIC, 48, -4.952261757269e-01, 4.266447971583e-04, 6.3695e-01, 2.8851e-03, + 2DIAGNOSTIC, 49, -4.976644153337e-01, 4.628943969954e-04, 6.4135e-01, 4.3950e-03, + 2DIAGNOSTIC, 50, -4.984047249636e-01, 4.673694127762e-04, 6.4451e-01, 3.1610e-03, + 2DIAGNOSTIC, 51, -5.016124914775e-01, 4.776504547676e-04, 6.4890e-01, 4.3941e-03, + 2DIAGNOSTIC, 52, -5.021350525027e-01, 4.888827911982e-04, 6.5186e-01, 2.9631e-03, + 2DIAGNOSTIC, 53, -5.022797573483e-01, 4.639666339949e-04, 6.5422e-01, 2.3549e-03, + 2DIAGNOSTIC, 54, -5.031040548240e-01, 4.124304240430e-04, 6.5688e-01, 2.6581e-03, + 2DIAGNOSTIC, 55, -5.043080575429e-01, 3.432405894731e-04, 6.5949e-01, 2.6121e-03, + 2DIAGNOSTIC, 56, -5.087190921252e-01, 3.370365025469e-04, 6.6327e-01, 3.7789e-03, + 2DIAGNOSTIC, 57, -5.097463547825e-01, 3.237206834171e-04, 6.6627e-01, 3.0029e-03, + 2DIAGNOSTIC, 58, -5.101678860532e-01, 3.120341877697e-04, 6.6883e-01, 2.5582e-03, + 2DIAGNOSTIC, 59, -5.120243437757e-01, 3.176879004094e-04, 6.7162e-01, 2.7919e-03, + 2DIAGNOSTIC, 60, -5.134776639365e-01, 3.140803430879e-04, 6.7405e-01, 2.4319e-03, + 2DIAGNOSTIC, 61, -5.152830903709e-01, 3.311446264174e-04, 6.7645e-01, 2.4009e-03, + 2DIAGNOSTIC, 62, -5.193032843882e-01, 3.615730850341e-04, 6.8042e-01, 3.9668e-03, + 2DIAGNOSTIC, 63, -5.199251759262e-01, 3.635831963041e-04, 6.8267e-01, 2.2490e-03, + 2DIAGNOSTIC, 64, -5.203143612887e-01, 3.430273659627e-04, 6.8519e-01, 2.5220e-03, + 2DIAGNOSTIC, 65, -5.210078340715e-01, 3.076441759413e-04, 6.8767e-01, 2.4819e-03, + 2DIAGNOSTIC, 66, -5.208073365651e-01, 2.831176226690e-04, 6.9011e-01, 2.4409e-03, + 2DIAGNOSTIC, 67, -5.210354628283e-01, 2.436559073139e-04, 6.9236e-01, 2.2500e-03, + 2DIAGNOSTIC, 68, -5.215316132794e-01, 1.901898115109e-04, 6.9463e-01, 2.2628e-03, + 2DIAGNOSTIC, 69, -5.232400679523e-01, 1.522952238878e-04, 6.9719e-01, 2.5680e-03, + 2DIAGNOSTIC, 70, -5.244162581602e-01, 1.237705641971e-04, 6.9983e-01, 2.6371e-03, + 2DIAGNOSTIC, 71, -5.272727712194e-01, 1.237377344745e-04, 7.0238e-01, 2.5470e-03, + 2DIAGNOSTIC, 72, -5.286534106360e-01, 1.574738292952e-04, 7.0527e-01, 2.8880e-03, + 2DIAGNOSTIC, 73, -5.290430668200e-01, 1.834630239816e-04, 7.0749e-01, 2.2271e-03, + 2DIAGNOSTIC, 74, -5.301002821565e-01, 2.029596367914e-04, 7.1035e-01, 2.8601e-03, + 2DIAGNOSTIC, 75, -5.305252394412e-01, 2.112656533601e-04, 7.1294e-01, 2.5909e-03, + 2DIAGNOSTIC, 76, -5.305552329594e-01, 1.974584480205e-04, 7.1553e-01, 2.5892e-03, + 2DIAGNOSTIC, 77, -5.307052101824e-01, 1.681501114822e-04, 7.1780e-01, 2.2709e-03, + 2DIAGNOSTIC, 78, -5.311166795260e-01, 1.305827298371e-04, 7.2013e-01, 2.3260e-03, + 2DIAGNOSTIC, 79, -5.326890415520e-01, 1.066481595021e-04, 7.2379e-01, 3.6581e-03, + 2DIAGNOSTIC, 80, -5.332935429860e-01, 8.579810878860e-05, 7.2641e-01, 2.6240e-03, + 2DIAGNOSTIC, 81, -5.339113530710e-01, 8.310772577752e-05, 7.2904e-01, 2.6259e-03, + 2DIAGNOSTIC, 82, -5.341355091501e-01, 8.445803858200e-05, 7.3128e-01, 2.2440e-03, + 2DIAGNOSTIC, 83, -5.347319159857e-01, 8.461609192486e-05, 7.3350e-01, 2.2199e-03, + 2DIAGNOSTIC, 84, -5.366557969086e-01, 9.765101829940e-05, 7.3638e-01, 2.8789e-03, + 2DIAGNOSTIC, 85, -5.376153757573e-01, 1.103362222182e-04, 7.3891e-01, 2.5258e-03, + 2DIAGNOSTIC, 86, -5.379419631581e-01, 1.146870014602e-04, 7.4141e-01, 2.5020e-03, + 2DIAGNOSTIC, 87, -5.376551626290e-01, 1.072435013554e-04, 7.4372e-01, 2.3060e-03, + 2DIAGNOSTIC, 88, -5.396101722323e-01, 1.056053921049e-04, 7.4601e-01, 2.2988e-03, + 2DIAGNOSTIC, 89, -5.422208630894e-01, 1.212038895569e-04, 7.4898e-01, 2.9669e-03, + 2DIAGNOSTIC, 90, -5.441883407642e-01, 1.411791723977e-04, 7.5128e-01, 2.2960e-03, + 2DIAGNOSTIC, 91, -5.451371419912e-01, 1.574882513693e-04, 7.5352e-01, 2.2440e-03, + 2DIAGNOSTIC, 92, -5.480509588165e-01, 1.788140463641e-04, 7.5580e-01, 2.2829e-03, + 2DIAGNOSTIC, 93, -5.624135946425e-01, 2.768179738988e-04, 7.5841e-01, 2.6109e-03, + 2DIAGNOSTIC, 94, -5.664815515880e-01, 3.805163057594e-04, 7.6224e-01, 3.8261e-03, + 2DIAGNOSTIC, 95, -5.671178261158e-01, 4.553066171099e-04, 7.6448e-01, 2.2371e-03, + 2DIAGNOSTIC, 96, -5.687679504253e-01, 4.982916335636e-04, 7.6700e-01, 2.5260e-03, + 2DIAGNOSTIC, 97, -5.703418298845e-01, 4.994651376411e-04, 7.6921e-01, 2.2080e-03, + 2DIAGNOSTIC, 98, -5.718382094645e-01, 4.711182560299e-04, 7.7174e-01, 2.5251e-03, + 2DIAGNOSTIC, 99, -5.733363770351e-01, 4.215353988665e-04, 7.7447e-01, 2.7330e-03, + 2DIAGNOSTIC, 100, -5.763730052205e-01, 3.628730877254e-04, 7.7756e-01, 3.0849e-03, + 2DIAGNOSTIC, 101, -6.026084025865e-01, 4.277815286387e-04, 7.8222e-01, 4.6620e-03, + 2DIAGNOSTIC, 102, -6.089814666256e-01, 4.965644255625e-04, 7.8609e-01, 3.8700e-03, + 2DIAGNOSTIC, 103, -6.237150328124e-01, 6.798355083149e-04, 7.8905e-01, 2.9631e-03, + 2DIAGNOSTIC, 104, -6.309248653663e-01, 8.559860917094e-04, 7.9241e-01, 3.3550e-03, + 2DIAGNOSTIC, 105, -6.523242099169e-01, 1.065349952500e-03, 7.9579e-01, 3.3882e-03, + 2DIAGNOSTIC, 106, -6.643126647711e-01, 1.236173505559e-03, 7.9914e-01, 3.3491e-03, + 2DIAGNOSTIC, 107, -6.713185807153e-01, 1.328031566142e-03, 8.0264e-01, 3.5009e-03, + 2DIAGNOSTIC, 108, -6.752580633809e-01, 1.320193758572e-03, 8.0532e-01, 2.6791e-03, + 2DIAGNOSTIC, 109, -6.804903064271e-01, 1.221349784406e-03, 8.0835e-01, 3.0251e-03, + 2DIAGNOSTIC, 110, -6.815138594981e-01, 1.023495450703e-03, 8.1113e-01, 2.7790e-03, + 2DIAGNOSTIC, 111, -6.935119005146e-01, 9.256718399812e-04, 8.1411e-01, 2.9831e-03, + 2DIAGNOSTIC, 112, -7.005227143766e-01, 8.060130210064e-04, 8.1698e-01, 2.8729e-03, + 2DIAGNOSTIC, 113, -7.068516053187e-01, 7.164769911451e-04, 8.2072e-01, 3.7420e-03, + 2DIAGNOSTIC, 114, -7.138527956329e-01, 6.278101581607e-04, 8.2367e-01, 2.9471e-03, + 2DIAGNOSTIC, 115, -7.149608031614e-01, 5.883576263784e-04, 8.2627e-01, 2.5940e-03, + 2DIAGNOSTIC, 116, -7.152248188010e-01, 5.510047016819e-04, 8.2879e-01, 2.5229e-03, + 2DIAGNOSTIC, 117, -7.152530763515e-01, 4.941263248315e-04, 8.3133e-01, 2.5449e-03, + 2DIAGNOSTIC, 118, -7.152228954362e-01, 4.087571658896e-04, 8.3382e-01, 2.4910e-03, + 2DIAGNOSTIC, 119, -7.151450636986e-01, 3.101227113026e-04, 8.3682e-01, 2.9988e-03, + 2DIAGNOSTIC, 120, -7.152822865707e-01, 1.881934872505e-04, 8.3982e-01, 2.9931e-03, + 2DIAGNOSTIC, 121, -7.154955943292e-01, 1.059063951579e-04, 8.4287e-01, 3.0541e-03, + 2DIAGNOSTIC, 122, -7.156592914586e-01, 4.691230153642e-05, 8.4536e-01, 2.4900e-03, + 2DIAGNOSTIC, 123, -7.156443400325e-01, 1.180123918166e-05, 8.4761e-01, 2.2509e-03, + 2DIAGNOSTIC, 124, -7.158580266111e-01, 7.768710349331e-06, 8.5011e-01, 2.4960e-03, + 2DIAGNOSTIC, 125, -7.159246009389e-01, 8.118440273005e-06, 8.5232e-01, 2.2101e-03, + 2DIAGNOSTIC, 126, -7.162632661905e-01, 1.025483925488e-05, 8.5480e-01, 2.4810e-03, + 2DIAGNOSTIC, 127, -7.164734511337e-01, 1.236587846847e-05, 8.5694e-01, 2.1400e-03, + 2DIAGNOSTIC, 128, -7.172115803648e-01, 1.625166161003e-05, 8.5905e-01, 2.1141e-03, + 2DIAGNOSTIC, 129, -7.184083531675e-01, 2.308209662565e-05, 8.6118e-01, 2.1241e-03, + 2DIAGNOSTIC, 130, -7.198192138777e-01, 3.378826702296e-05, 8.6344e-01, 2.2600e-03, + 2DIAGNOSTIC, 131, -7.229195475642e-01, 5.437660570096e-05, 8.6771e-01, 4.2720e-03, + 2DIAGNOSTIC, 132, -7.235005991591e-01, 7.207597220149e-05, 8.7068e-01, 2.9719e-03, + 2DIAGNOSTIC, 133, -7.235108402009e-01, 8.255518484454e-05, 8.7333e-01, 2.6491e-03, + 2DIAGNOSTIC, 134, -7.234415491726e-01, 8.556518083173e-05, 8.7564e-01, 2.3069e-03, + 2DIAGNOSTIC, 135, -7.234072832027e-01, 8.029388896204e-05, 8.7788e-01, 2.2399e-03, + 2DIAGNOSTIC, 136, -7.235918379086e-01, 6.925352812491e-05, 8.8011e-01, 2.2380e-03, + 2DIAGNOSTIC, 137, -7.242949945681e-01, 5.518982883654e-05, 8.8233e-01, 2.2199e-03, + 2DIAGNOSTIC, 138, -7.261362320594e-01, 4.587900966950e-05, 8.8452e-01, 2.1811e-03, + 2DIAGNOSTIC, 139, -7.319018815578e-01, 5.827040705704e-05, 8.8761e-01, 3.0951e-03, + 2DIAGNOSTIC, 140, -7.327521709089e-01, 7.240425996906e-05, 8.9034e-01, 2.7320e-03, + 2DIAGNOSTIC, 141, -7.328950907699e-01, 9.138784587962e-05, 8.9306e-01, 2.7139e-03, + 2DIAGNOSTIC, 142, -7.327996343917e-01, 1.032434284788e-04, 8.9549e-01, 2.4381e-03, + 2DIAGNOSTIC, 143, -7.327237040245e-01, 1.045486662592e-04, 8.9821e-01, 2.7151e-03, + 2DIAGNOSTIC, 144, -7.326320214400e-01, 9.483234611219e-05, 9.0058e-01, 2.3739e-03, + 2DIAGNOSTIC, 145, -7.325722124017e-01, 7.578610732622e-05, 9.0301e-01, 2.4252e-03, + 2DIAGNOSTIC, 146, -7.328981701051e-01, 5.187284136310e-05, 9.0541e-01, 2.4009e-03, + 2DIAGNOSTIC, 147, -7.331512405183e-01, 2.678199026204e-05, 9.0816e-01, 2.7452e-03, + 2DIAGNOSTIC, 148, -7.335148405664e-01, 6.629191782829e-06, 9.1060e-01, 2.4450e-03, + 2DIAGNOSTIC, 149, -7.336477070186e-01, 6.273579107711e-06, 9.1312e-01, 2.5210e-03, + 2DIAGNOSTIC, 150, -7.356144963638e-01, 1.487143727605e-05, 9.1597e-01, 2.8498e-03, + 2DIAGNOSTIC, 151, -7.366772526712e-01, 2.576637813558e-05, 9.2017e-01, 4.2021e-03, + 2DIAGNOSTIC, 152, -7.370392577213e-01, 3.485039815273e-05, 9.2292e-01, 2.7449e-03, + 2DIAGNOSTIC, 153, -7.370634625227e-01, 4.036788746175e-05, 9.2538e-01, 2.4641e-03, + 2DIAGNOSTIC, 154, -7.372091803028e-01, 4.214420784558e-05, 9.2813e-01, 2.7471e-03, + 2DIAGNOSTIC, 155, -7.375911141905e-01, 4.075653816776e-05, 9.3089e-01, 2.7640e-03, + 2DIAGNOSTIC, 156, -7.376442036193e-01, 3.656702982454e-05, 9.3359e-01, 2.6941e-03, + 2DIAGNOSTIC, 157, -7.375075976044e-01, 2.935585402729e-05, 9.3630e-01, 2.7130e-03, + 2DIAGNOSTIC, 158, -7.373534076939e-01, 2.024746314599e-05, 9.3899e-01, 2.6932e-03, + 2DIAGNOSTIC, 159, -7.373226440957e-01, 9.549172729311e-06, 9.4129e-01, 2.2941e-03, + 2DIAGNOSTIC, 160, -7.375423952618e-01, 4.812842694019e-06, 9.4378e-01, 2.4929e-03, + 2DIAGNOSTIC, 161, -7.379212057640e-01, 4.101782050061e-06, 9.4631e-01, 2.5320e-03, + 2DIAGNOSTIC, 162, -7.379963169898e-01, 4.371049891634e-06, 9.4848e-01, 2.1691e-03, + 2DIAGNOSTIC, 163, -7.384123192429e-01, 5.605512219922e-06, 9.5099e-01, 2.5129e-03, + 2DIAGNOSTIC, 164, -7.386720160325e-01, 7.471305146396e-06, 9.5350e-01, 2.5101e-03, + 2DIAGNOSTIC, 165, -7.387589813108e-01, 9.973778541526e-06, 9.5568e-01, 2.1760e-03, + 2DIAGNOSTIC, 166, -7.391277815586e-01, 1.274978991305e-05, 9.5795e-01, 2.2650e-03, + 2DIAGNOSTIC, 167, -7.405846008926e-01, 1.815108994854e-05, 9.6086e-01, 2.9140e-03, + 2DIAGNOSTIC, 168, -7.410537495659e-01, 2.255163907594e-05, 9.6397e-01, 3.1152e-03, + 2DIAGNOSTIC, 169, -7.413794203457e-01, 2.558479784128e-05, 9.6619e-01, 2.2120e-03, + 2DIAGNOSTIC, 170, -7.413113735018e-01, 2.658627225511e-05, 9.6866e-01, 2.4760e-03, + 2DIAGNOSTIC, 171, -7.413381296752e-01, 2.619797382746e-05, 9.7117e-01, 2.5060e-03, + 2DIAGNOSTIC, 172, -7.418747417802e-01, 2.494032068330e-05, 9.7428e-01, 3.1149e-03, + 2DIAGNOSTIC, 173, -7.426485584936e-01, 2.456365286535e-05, 9.7675e-01, 2.4691e-03, + 2DIAGNOSTIC, 174, -7.447155340761e-01, 2.834036126951e-05, 9.7950e-01, 2.7459e-03, + 2DIAGNOSTIC, 175, -7.462417599609e-01, 3.373323638878e-05, 9.8215e-01, 2.6538e-03, + 2DIAGNOSTIC, 176, -7.482243401565e-01, 4.216120384996e-05, 9.8547e-01, 3.3131e-03, + 2DIAGNOSTIC, 177, -7.482883717812e-01, 5.047905312040e-05, 9.8810e-01, 2.6340e-03, + 2DIAGNOSTIC, 178, -7.483966323766e-01, 5.540407484619e-05, 9.9070e-01, 2.5971e-03, + 2DIAGNOSTIC, 179, -7.482847532087e-01, 5.546988744857e-05, 9.9330e-01, 2.6050e-03, + 2DIAGNOSTIC, 180, -7.479947946422e-01, 4.916541963503e-05, 9.9556e-01, 2.2569e-03, + 2DIAGNOSTIC, 181, -7.478863662662e-01, 3.797031649084e-05, 9.9814e-01, 2.5790e-03, + 2DIAGNOSTIC, 182, -7.481146727656e-01, 2.532602695807e-05, 1.0007e+00, 2.5699e-03, + 2DIAGNOSTIC, 183, -7.479997872587e-01, 1.208481044495e-05, 1.0032e+00, 2.5330e-03, + 2DIAGNOSTIC, 184, -7.479014207400e-01, 2.965146179006e-06, 1.0058e+00, 2.5148e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.077625443974e-01, 1.797693134862e+308, 1.2882e+00, 2.8247e-01, + 2DIAGNOSTIC, 2, -6.095983701853e-01, 1.797693134862e+308, 1.3024e+00, 1.4148e-02, + 2DIAGNOSTIC, 3, -6.116996090192e-01, 1.797693134862e+308, 1.3157e+00, 1.3326e-02, + 2DIAGNOSTIC, 4, -6.127888074569e-01, 1.797693134862e+308, 1.3287e+00, 1.2984e-02, + 2DIAGNOSTIC, 5, -6.130820652319e-01, 1.797693134862e+308, 1.3446e+00, 1.5939e-02, + 2DIAGNOSTIC, 6, -6.133739340453e-01, 1.797693134862e+308, 1.3585e+00, 1.3840e-02, + 2DIAGNOSTIC, 7, -6.137628740698e-01, 1.797693134862e+308, 1.3824e+00, 2.3967e-02, + 2DIAGNOSTIC, 8, -6.137809568279e-01, 1.797693134862e+308, 1.4000e+00, 1.7531e-02, + 2DIAGNOSTIC, 9, -6.138466369345e-01, 1.797693134862e+308, 1.4146e+00, 1.4671e-02, + 2DIAGNOSTIC, 10, -6.141016870777e-01, 5.607933798867e-04, 1.4308e+00, 1.6213e-02, + 2DIAGNOSTIC, 11, -6.142741003279e-01, 3.364264182748e-04, 1.4444e+00, 1.3532e-02, + 2DIAGNOSTIC, 12, -6.143775414541e-01, 1.926468215592e-04, 1.4622e+00, 1.7823e-02, + 2DIAGNOSTIC, 13, -6.143420267872e-01, 1.268124812619e-04, 1.4757e+00, 1.3536e-02, + 2DIAGNOSTIC, 14, -6.143466977040e-01, 9.548582080064e-05, 1.4893e+00, 1.3606e-02, + 2DIAGNOSTIC, 15, -6.143962540425e-01, 7.020148619287e-05, 1.5051e+00, 1.5767e-02, + 2DIAGNOSTIC, 16, -6.145057744523e-01, 5.300528973631e-05, 1.5207e+00, 1.5566e-02, + 2DIAGNOSTIC, 17, -6.145487311599e-01, 4.490781701304e-05, 1.5357e+00, 1.5023e-02, + 2DIAGNOSTIC, 18, -6.145704016163e-01, 3.489153108804e-05, 1.5489e+00, 1.3215e-02, + 2DIAGNOSTIC, 19, -6.146461295901e-01, 2.626249300195e-05, 1.5617e+00, 1.2782e-02, + 2DIAGNOSTIC, 20, -6.146928512828e-01, 2.304817217161e-05, 1.5746e+00, 1.2930e-02, + 2DIAGNOSTIC, 21, -6.148236734345e-01, 2.470809462045e-05, 1.5872e+00, 1.2560e-02, + 2DIAGNOSTIC, 22, -6.151115667198e-01, 3.226363428772e-05, 1.5999e+00, 1.2673e-02, + 2DIAGNOSTIC, 23, -6.153590293192e-01, 4.045520398469e-05, 1.6254e+00, 2.5565e-02, + 2DIAGNOSTIC, 24, -6.155169464041e-01, 4.739052786838e-05, 1.6419e+00, 1.6507e-02, + 2DIAGNOSTIC, 25, -6.155421466994e-01, 5.081659812250e-05, 1.6548e+00, 1.2865e-02, + 2DIAGNOSTIC, 26, -6.155221816329e-01, 5.095009216358e-05, 1.6684e+00, 1.3611e-02, + 2DIAGNOSTIC, 27, -6.155411677989e-01, 4.742210306724e-05, 1.6817e+00, 1.3304e-02, + 2DIAGNOSTIC, 28, -6.155901872210e-01, 4.085993474250e-05, 1.6950e+00, 1.3254e-02, + 2DIAGNOSTIC, 29, -6.157086569691e-01, 3.409561095142e-05, 1.7099e+00, 1.4925e-02, + 2DIAGNOSTIC, 30, -6.158279258066e-01, 2.722927210724e-05, 1.7256e+00, 1.5726e-02, + 2DIAGNOSTIC, 31, -6.159580793672e-01, 2.217064453306e-05, 1.7406e+00, 1.5019e-02, + 2DIAGNOSTIC, 32, -6.161119918317e-01, 2.173365010313e-05, 1.7599e+00, 1.9278e-02, + 2DIAGNOSTIC, 33, -6.161825652099e-01, 2.372022693245e-05, 1.7766e+00, 1.6721e-02, + 2DIAGNOSTIC, 34, -6.163119077421e-01, 2.731995896125e-05, 1.7913e+00, 1.4642e-02, + 2DIAGNOSTIC, 35, -6.163756817620e-01, 2.936032470004e-05, 1.8036e+00, 1.2371e-02, + 2DIAGNOSTIC, 36, -6.164581462118e-01, 2.938003855723e-05, 1.8183e+00, 1.4628e-02, + 2DIAGNOSTIC, 37, -6.167972810474e-01, 3.115217593900e-05, 1.8343e+00, 1.6043e-02, + 2DIAGNOSTIC, 38, -6.169028241359e-01, 3.170818833787e-05, 1.8486e+00, 1.4291e-02, + 2DIAGNOSTIC, 39, -6.168796174635e-01, 3.042796431875e-05, 1.8634e+00, 1.4781e-02, + 2DIAGNOSTIC, 40, -6.169339921984e-01, 2.845165527892e-05, 1.8775e+00, 1.4107e-02, + 2DIAGNOSTIC, 41, -6.169466090326e-01, 2.549274690195e-05, 1.8898e+00, 1.2288e-02, + 2DIAGNOSTIC, 42, -6.170965303438e-01, 2.359420489526e-05, 1.9081e+00, 1.8284e-02, + 2DIAGNOSTIC, 43, -6.171370144600e-01, 2.071269024887e-05, 1.9206e+00, 1.2516e-02, + 2DIAGNOSTIC, 44, -6.171667806214e-01, 1.778119013835e-05, 1.9349e+00, 1.4301e-02, + 2DIAGNOSTIC, 45, -6.172381816792e-01, 1.478528656838e-05, 1.9481e+00, 1.3223e-02, + 2DIAGNOSTIC, 46, -6.173753430922e-01, 1.267068656970e-05, 1.9639e+00, 1.5760e-02, + 2DIAGNOSTIC, 47, -6.176282175388e-01, 1.524404715489e-05, 1.9776e+00, 1.3778e-02, + 2DIAGNOSTIC, 48, -6.175845358893e-01, 1.686952476770e-05, 1.9897e+00, 1.2016e-02, + 2DIAGNOSTIC, 49, -6.176666875742e-01, 1.749418227697e-05, 2.0052e+00, 1.5496e-02, + 2DIAGNOSTIC, 50, -6.176728688169e-01, 1.705290650536e-05, 2.0173e+00, 1.2154e-02, + 2DIAGNOSTIC, 51, -6.176491577094e-01, 1.489335603853e-05, 2.0311e+00, 1.3811e-02, + 2DIAGNOSTIC, 52, -6.176728359130e-01, 1.297133999681e-05, 2.0429e+00, 1.1795e-02, + 2DIAGNOSTIC, 53, -6.176654778642e-01, 1.023244173177e-05, 2.0566e+00, 1.3659e-02, + 2DIAGNOSTIC, 54, -6.177138349064e-01, 7.361202025706e-06, 2.0707e+00, 1.4072e-02, + 2DIAGNOSTIC, 55, -6.176880637694e-01, 4.302522207369e-06, 2.0864e+00, 1.5797e-02, + 2DIAGNOSTIC, 56, -6.176766194320e-01, 1.991719366226e-06, 2.1007e+00, 1.4295e-02, + 2DIAGNOSTIC, 57, -6.176622511367e-01, 1.580935433954e-06, 2.1138e+00, 1.3063e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.172339043987e-01, 1.797693134862e+308, 2.5458e+00, 4.3201e-01, + 2DIAGNOSTIC, 2, -5.174211136882e-01, 1.797693134862e+308, 2.6333e+00, 8.7440e-02, + 2DIAGNOSTIC, 3, -5.175673272416e-01, 1.797693134862e+308, 2.7250e+00, 9.1781e-02, + 2DIAGNOSTIC, 4, -5.178971303707e-01, 1.797693134862e+308, 2.8297e+00, 1.0462e-01, + 2DIAGNOSTIC, 5, -5.185836338725e-01, 1.797693134862e+308, 3.0041e+00, 1.7447e-01, + 2DIAGNOSTIC, 6, -5.186332853086e-01, 1.797693134862e+308, 3.1070e+00, 1.0288e-01, + 2DIAGNOSTIC, 7, -5.186510056385e-01, 1.797693134862e+308, 3.1978e+00, 9.0800e-02, + 2DIAGNOSTIC, 8, -5.186823471674e-01, 1.797693134862e+308, 3.2863e+00, 8.8443e-02, + 2DIAGNOSTIC, 9, -5.186996501218e-01, 1.797693134862e+308, 3.3851e+00, 9.8841e-02, + 2DIAGNOSTIC, 10, -5.187045802939e-01, 2.077872041156e-04, 3.4733e+00, 8.8159e-02, + 2DIAGNOSTIC, 11, -5.187044677198e-01, 1.469422573394e-04, 3.5861e+00, 1.1287e-01, + 2DIAGNOSTIC, 12, -5.187059855264e-01, 9.244542218892e-05, 3.6730e+00, 8.6848e-02, + 2DIAGNOSTIC, 13, -5.187029809569e-01, 4.423041233613e-05, 3.7761e+00, 1.0311e-01, + 2DIAGNOSTIC, 14, -5.187064773629e-01, 1.141749101165e-05, 3.8635e+00, 8.7371e-02, + 2DIAGNOSTIC, 15, -5.187111760549e-01, 7.377195438779e-06, 3.9653e+00, 1.0185e-01, + 2DIAGNOSTIC, 16, -5.187195299874e-01, 5.347533367395e-06, 4.0979e+00, 1.3260e-01, + 2DIAGNOSTIC, 17, -5.187235116172e-01, 3.923348346570e-06, 4.1987e+00, 1.0082e-01, + 2DIAGNOSTIC, 18, -5.187228531320e-01, 3.392048483347e-06, 4.2995e+00, 1.0077e-01, + 2DIAGNOSTIC, 19, -5.187223613695e-01, 3.251841035799e-06, 4.3866e+00, 8.7104e-02, + 2DIAGNOSTIC, 20, -5.187192973913e-01, 3.028100719664e-06, 4.4890e+00, 1.0237e-01, + 2DIAGNOSTIC, 21, -5.187146159439e-01, 2.563428804690e-06, 4.5952e+00, 1.0629e-01, + 2DIAGNOSTIC, 22, -5.187217669641e-01, 2.264089325632e-06, 4.7003e+00, 1.0510e-01, + 2DIAGNOSTIC, 23, -5.187219117421e-01, 1.840898925992e-06, 4.7914e+00, 9.1094e-02, + 2DIAGNOSTIC, 24, -5.187246095808e-01, 1.552939836023e-06, 4.8809e+00, 8.9500e-02, + 2DIAGNOSTIC, 25, -5.187312769834e-01, 1.513935834981e-06, 4.9804e+00, 9.9508e-02, + 2DIAGNOSTIC, 26, -5.187379487231e-01, 1.767331647966e-06, 5.0724e+00, 9.1907e-02, + 2DIAGNOSTIC, 27, -5.187323876181e-01, 1.914506754144e-06, 5.1920e+00, 1.1964e-01, + 2DIAGNOSTIC, 28, -5.187318235662e-01, 1.961922183664e-06, 5.3229e+00, 1.3085e-01, + 2DIAGNOSTIC, 29, -5.187271985429e-01, 1.833958251332e-06, 5.4247e+00, 1.0187e-01, + 2DIAGNOSTIC, 30, -5.187241995400e-01, 1.536116947531e-06, 5.5245e+00, 9.9736e-02, + 2DIAGNOSTIC, 31, -5.187227990822e-01, 1.100457036100e-06, 5.6118e+00, 8.7306e-02, + Elapsed time (stage 0): 5.7558e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.594099402926e-01, 1.797693134862e+308, 2.1486e-01, 2.1486e-01, + 2DIAGNOSTIC, 2, -8.619637117800e-01, 1.797693134862e+308, 2.1601e-01, 1.1442e-03, + 2DIAGNOSTIC, 3, -8.635876295724e-01, 1.797693134862e+308, 2.1721e-01, 1.2012e-03, + 2DIAGNOSTIC, 4, -8.711725023448e-01, 1.797693134862e+308, 2.1838e-01, 1.1780e-03, + 2DIAGNOSTIC, 5, -8.777451804061e-01, 1.797693134862e+308, 2.1959e-01, 1.2050e-03, + 2DIAGNOSTIC, 6, -8.932328115823e-01, 1.797693134862e+308, 2.2120e-01, 1.6069e-03, + 2DIAGNOSTIC, 7, -9.016112081510e-01, 1.797693134862e+308, 2.2237e-01, 1.1711e-03, + 2DIAGNOSTIC, 8, -9.075804658569e-01, 1.797693134862e+308, 2.2364e-01, 1.2710e-03, + 2DIAGNOSTIC, 9, -9.187016383643e-01, 1.797693134862e+308, 2.2490e-01, 1.2569e-03, + 2DIAGNOSTIC, 10, -9.351906404681e-01, 5.533926509175e-03, 2.2642e-01, 1.5280e-03, + 2DIAGNOSTIC, 11, -9.415932505442e-01, 5.520277577637e-03, 2.2791e-01, 1.4899e-03, + 2DIAGNOSTIC, 12, -9.437907792322e-01, 5.144146041366e-03, 2.2981e-01, 1.8928e-03, + 2DIAGNOSTIC, 13, -9.442794221678e-01, 4.422653473970e-03, 2.3122e-01, 1.4100e-03, + 2DIAGNOSTIC, 14, -9.467368947876e-01, 3.632846568495e-03, 2.3315e-01, 1.9350e-03, + 2DIAGNOSTIC, 15, -9.487845978920e-01, 2.789113494037e-03, 2.3504e-01, 1.8940e-03, + 2DIAGNOSTIC, 16, -9.490027474731e-01, 2.103291383777e-03, 2.3688e-01, 1.8339e-03, + 2DIAGNOSTIC, 17, -9.484626747827e-01, 1.456235662159e-03, 2.3956e-01, 2.6770e-03, + 2DIAGNOSTIC, 18, -9.479606270855e-01, 8.442798922357e-04, 2.4184e-01, 2.2881e-03, + 2DIAGNOSTIC, 19, -9.485063173558e-01, 4.049882230479e-04, 2.4452e-01, 2.6741e-03, + 2DIAGNOSTIC, 20, -9.481696823828e-01, 2.202838659738e-04, 2.4666e-01, 2.1431e-03, + 2DIAGNOSTIC, 21, -9.472337772218e-01, 1.136007627993e-04, 2.4801e-01, 1.3449e-03, + 2DIAGNOSTIC, 22, -9.482251338185e-01, 5.247387248344e-05, 2.4954e-01, 1.5290e-03, + 2DIAGNOSTIC, 23, -9.489595842069e-01, 7.388479257450e-06, 2.5115e-01, 1.6189e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.121137705501e-01, 1.797693134862e+308, 4.7478e-01, 2.2363e-01, + 2DIAGNOSTIC, 2, -8.117598519612e-01, 1.797693134862e+308, 4.7716e-01, 2.3820e-03, + 2DIAGNOSTIC, 3, -8.128517985356e-01, 1.797693134862e+308, 4.7956e-01, 2.3942e-03, + 2DIAGNOSTIC, 4, -8.150484185864e-01, 1.797693134862e+308, 4.8205e-01, 2.4910e-03, + 2DIAGNOSTIC, 5, -8.155689495526e-01, 1.797693134862e+308, 4.8438e-01, 2.3291e-03, + 2DIAGNOSTIC, 6, -8.167740591316e-01, 1.797693134862e+308, 4.8668e-01, 2.3060e-03, + 2DIAGNOSTIC, 7, -8.187030047823e-01, 1.797693134862e+308, 4.8932e-01, 2.6331e-03, + 2DIAGNOSTIC, 8, -8.214000009650e-01, 1.797693134862e+308, 4.9248e-01, 3.1679e-03, + 2DIAGNOSTIC, 9, -8.213027618300e-01, 1.797693134862e+308, 4.9519e-01, 2.7061e-03, + 2DIAGNOSTIC, 10, -8.218298803958e-01, 9.065558740048e-04, 4.9751e-01, 2.3220e-03, + 2DIAGNOSTIC, 11, -8.220164032071e-01, 8.101119081430e-04, 4.9977e-01, 2.2562e-03, + 2DIAGNOSTIC, 12, -8.226846430324e-01, 6.652671859226e-04, 5.0235e-01, 2.5871e-03, + 2DIAGNOSTIC, 13, -8.230515146677e-01, 5.193905358088e-04, 5.0467e-01, 2.3110e-03, + 2DIAGNOSTIC, 14, -8.236033396586e-01, 4.162167772656e-04, 5.0712e-01, 2.4590e-03, + 2DIAGNOSTIC, 15, -8.244252291152e-01, 3.206791306480e-04, 5.0978e-01, 2.6600e-03, + 2DIAGNOSTIC, 16, -8.248832880737e-01, 2.430836861344e-04, 5.1284e-01, 3.0508e-03, + 2DIAGNOSTIC, 17, -8.247481380484e-01, 1.875027815079e-04, 5.1586e-01, 3.0200e-03, + 2DIAGNOSTIC, 18, -8.244942185650e-01, 1.685119240339e-04, 5.1832e-01, 2.4679e-03, + 2DIAGNOSTIC, 19, -8.239425630126e-01, 1.242052808324e-04, 5.2112e-01, 2.7919e-03, + 2DIAGNOSTIC, 20, -8.239269837347e-01, 8.185558826473e-05, 5.2352e-01, 2.4040e-03, + 2DIAGNOSTIC, 21, -8.240203040722e-01, 4.026217570721e-05, 5.2617e-01, 2.6462e-03, + 2DIAGNOSTIC, 22, -8.242555261406e-01, 1.305958745168e-05, 5.2884e-01, 2.6729e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.876308960592e-01, 1.797693134862e+308, 7.6894e-01, 2.4010e-01, + 2DIAGNOSTIC, 2, -6.886689996262e-01, 1.797693134862e+308, 7.8281e-01, 1.3874e-02, + 2DIAGNOSTIC, 3, -6.899227400557e-01, 1.797693134862e+308, 7.9656e-01, 1.3753e-02, + 2DIAGNOSTIC, 4, -6.912723672495e-01, 1.797693134862e+308, 8.1016e-01, 1.3599e-02, + 2DIAGNOSTIC, 5, -6.928334918229e-01, 1.797693134862e+308, 8.2319e-01, 1.3028e-02, + 2DIAGNOSTIC, 6, -6.940730650633e-01, 1.797693134862e+308, 8.3649e-01, 1.3298e-02, + 2DIAGNOSTIC, 7, -6.953006311704e-01, 1.797693134862e+308, 8.5372e-01, 1.7234e-02, + 2DIAGNOSTIC, 8, -6.956829631618e-01, 1.797693134862e+308, 8.7212e-01, 1.8397e-02, + 2DIAGNOSTIC, 9, -6.959017534664e-01, 1.797693134862e+308, 8.8450e-01, 1.2383e-02, + 2DIAGNOSTIC, 10, -6.967061615364e-01, 8.861509327600e-04, 8.9752e-01, 1.3017e-02, + 2DIAGNOSTIC, 11, -6.969395528002e-01, 7.103522650619e-04, 9.2000e-01, 2.2483e-02, + 2DIAGNOSTIC, 12, -6.969808173203e-01, 5.369621677117e-04, 9.3283e-01, 1.2826e-02, + 2DIAGNOSTIC, 13, -6.971764557479e-01, 3.879133143569e-04, 9.4757e-01, 1.4747e-02, + 2DIAGNOSTIC, 14, -6.971647208841e-01, 2.638277524274e-04, 9.6226e-01, 1.4683e-02, + 2DIAGNOSTIC, 15, -6.972011217180e-01, 1.753657192122e-04, 9.8082e-01, 1.8564e-02, + 2DIAGNOSTIC, 16, -6.971607869689e-01, 1.119788367013e-04, 9.9727e-01, 1.6445e-02, + 2DIAGNOSTIC, 17, -6.971631534308e-01, 7.565182462289e-05, 1.0130e+00, 1.5743e-02, + 2DIAGNOSTIC, 18, -6.971495816790e-01, 4.503041915351e-05, 1.0264e+00, 1.3423e-02, + 2DIAGNOSTIC, 19, -6.972061528436e-01, 1.912170768144e-05, 1.0418e+00, 1.5368e-02, + 2DIAGNOSTIC, 20, -6.972575413043e-01, 1.158513025525e-05, 1.0550e+00, 1.3238e-02, + 2DIAGNOSTIC, 21, -6.974729160862e-01, 1.258556628530e-05, 1.0715e+00, 1.6421e-02, + 2DIAGNOSTIC, 22, -6.975573250541e-01, 1.461825631259e-05, 1.0866e+00, 1.5122e-02, + 2DIAGNOSTIC, 23, -6.976566963754e-01, 2.050482139155e-05, 1.0999e+00, 1.3330e-02, + 2DIAGNOSTIC, 24, -6.977763995284e-01, 2.593039699209e-05, 1.1129e+00, 1.2975e-02, + 2DIAGNOSTIC, 25, -6.979488505208e-01, 3.199505858806e-05, 1.1261e+00, 1.3167e-02, + 2DIAGNOSTIC, 26, -6.984971942688e-01, 4.260071622321e-05, 1.1398e+00, 1.3704e-02, + 2DIAGNOSTIC, 27, -6.994469567959e-01, 6.273610318387e-05, 1.1533e+00, 1.3548e-02, + 2DIAGNOSTIC, 28, -7.002758726201e-01, 8.725170424236e-05, 1.1769e+00, 2.3586e-02, + 2DIAGNOSTIC, 29, -7.015019991041e-01, 1.199327693756e-04, 1.1925e+00, 1.5607e-02, + 2DIAGNOSTIC, 30, -7.016427828730e-01, 1.415469010935e-04, 1.2071e+00, 1.4613e-02, + 2DIAGNOSTIC, 31, -7.020944880270e-01, 1.573907689385e-04, 1.2229e+00, 1.5829e-02, + 2DIAGNOSTIC, 32, -7.029576273036e-01, 1.693565151465e-04, 1.2366e+00, 1.3654e-02, + 2DIAGNOSTIC, 33, -7.056520238461e-01, 1.987388735706e-04, 1.2558e+00, 1.9172e-02, + 2DIAGNOSTIC, 34, -7.071107965046e-01, 2.257165411920e-04, 1.2708e+00, 1.5033e-02, + 2DIAGNOSTIC, 35, -7.077079872491e-01, 2.387981770757e-04, 1.2862e+00, 1.5409e-02, + 2DIAGNOSTIC, 36, -7.078359092692e-01, 2.365841143457e-04, 1.3033e+00, 1.7094e-02, + 2DIAGNOSTIC, 37, -7.077951901334e-01, 2.220080461714e-04, 1.3181e+00, 1.4839e-02, + 2DIAGNOSTIC, 38, -7.080659391094e-01, 1.982040399977e-04, 1.3327e+00, 1.4546e-02, + 2DIAGNOSTIC, 39, -7.081657645589e-01, 1.703766499302e-04, 1.3462e+00, 1.3521e-02, + 2DIAGNOSTIC, 40, -7.082419376066e-01, 1.302552970048e-04, 1.3597e+00, 1.3512e-02, + 2DIAGNOSTIC, 41, -7.084454640575e-01, 8.656827669657e-05, 1.3733e+00, 1.3555e-02, + 2DIAGNOSTIC, 42, -7.088389334862e-01, 4.843598610486e-05, 1.3969e+00, 2.3664e-02, + 2DIAGNOSTIC, 43, -7.090191516676e-01, 3.428341969263e-05, 1.4147e+00, 1.7761e-02, + 2DIAGNOSTIC, 44, -7.090466720143e-01, 3.114656612295e-05, 1.4287e+00, 1.3949e-02, + 2DIAGNOSTIC, 45, -7.090497713184e-01, 3.070997663674e-05, 1.4428e+00, 1.4110e-02, + 2DIAGNOSTIC, 46, -7.090574646505e-01, 2.865565595076e-05, 1.4606e+00, 1.7843e-02, + 2DIAGNOSTIC, 47, -7.090656997643e-01, 2.362040678310e-05, 1.4770e+00, 1.6423e-02, + 2DIAGNOSTIC, 48, -7.090336318944e-01, 1.859054040741e-05, 1.4907e+00, 1.3684e-02, + 2DIAGNOSTIC, 49, -7.090437555659e-01, 1.301712729062e-05, 1.5040e+00, 1.3246e-02, + 2DIAGNOSTIC, 50, -7.090588879723e-01, 7.234254320154e-06, 1.5193e+00, 1.5367e-02, + 2DIAGNOSTIC, 51, -7.090893863019e-01, 2.832300060766e-06, 1.5357e+00, 1.6336e-02, + 2DIAGNOSTIC, 52, -7.090769813029e-01, 1.318881055042e-06, 1.5495e+00, 1.3868e-02, + 2DIAGNOSTIC, 53, -7.090676548963e-01, 1.108854144526e-06, 1.5629e+00, 1.3331e-02, + 2DIAGNOSTIC, 54, -7.090619164815e-01, 1.026769395656e-06, 1.5783e+00, 1.5467e-02, + 2DIAGNOSTIC, 55, -7.091318983445e-01, 1.435636426714e-06, 1.5938e+00, 1.5475e-02, + 2DIAGNOSTIC, 56, -7.091234194751e-01, 1.719143744808e-06, 1.6075e+00, 1.3651e-02, + 2DIAGNOSTIC, 57, -7.090986655578e-01, 1.782353949393e-06, 1.6234e+00, 1.5989e-02, + 2DIAGNOSTIC, 58, -7.090860512747e-01, 1.430846733722e-06, 1.6370e+00, 1.3603e-02, + 2DIAGNOSTIC, 59, -7.091152051160e-01, 1.273262932158e-06, 1.6530e+00, 1.5977e-02, + 2DIAGNOSTIC, 60, -7.091442805971e-01, 1.324175139410e-06, 1.6688e+00, 1.5821e-02, + 2DIAGNOSTIC, 61, -7.091499154073e-01, 1.533472242417e-06, 1.6846e+00, 1.5722e-02, + 2DIAGNOSTIC, 62, -7.091361711529e-01, 1.484746087330e-06, 1.7004e+00, 1.5790e-02, + 2DIAGNOSTIC, 63, -7.091017822177e-01, 1.076689731955e-06, 1.7142e+00, 1.3850e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.939384765160e-01, 1.797693134862e+308, 2.1707e+00, 4.5654e-01, + 2DIAGNOSTIC, 2, -5.948883004875e-01, 1.797693134862e+308, 2.2702e+00, 9.9413e-02, + 2DIAGNOSTIC, 3, -5.957131693442e-01, 1.797693134862e+308, 2.3662e+00, 9.6009e-02, + 2DIAGNOSTIC, 4, -5.960982369976e-01, 1.797693134862e+308, 2.4621e+00, 9.5915e-02, + 2DIAGNOSTIC, 5, -5.964845475953e-01, 1.797693134862e+308, 2.5586e+00, 9.6473e-02, + 2DIAGNOSTIC, 6, -5.968728540867e-01, 1.797693134862e+308, 2.6695e+00, 1.1090e-01, + 2DIAGNOSTIC, 7, -5.969780328542e-01, 1.797693134862e+308, 2.9659e+00, 2.9649e-01, + 2DIAGNOSTIC, 8, -5.969793027040e-01, 1.797693134862e+308, 3.0737e+00, 1.0780e-01, + 2DIAGNOSTIC, 9, -5.969794378361e-01, 1.797693134862e+308, 3.1671e+00, 9.3343e-02, + 2DIAGNOSTIC, 10, -5.969777253047e-01, 3.001677902742e-04, 3.2578e+00, 9.0732e-02, + 2DIAGNOSTIC, 11, -5.969779992142e-01, 1.788859045908e-04, 3.3500e+00, 9.2220e-02, + 2DIAGNOSTIC, 12, -5.969765165156e-01, 9.909226550460e-05, 3.4424e+00, 9.2358e-02, + 2DIAGNOSTIC, 13, -5.969753421981e-01, 5.305938623407e-05, 3.5409e+00, 9.8511e-02, + 2DIAGNOSTIC, 14, -5.969766326090e-01, 2.200445091369e-05, 3.6390e+00, 9.8114e-02, + 2DIAGNOSTIC, 15, -5.969787714877e-01, 5.318088767636e-06, 3.7376e+00, 9.8550e-02, + 2DIAGNOSTIC, 16, -5.969842141712e-01, 2.060919311445e-06, 3.8485e+00, 1.1097e-01, + 2DIAGNOSTIC, 17, -5.969844228753e-01, 2.130330590495e-06, 3.9413e+00, 9.2799e-02, + 2DIAGNOSTIC, 18, -5.969879308796e-01, 2.297187735388e-06, 4.0459e+00, 1.0453e-01, + 2DIAGNOSTIC, 19, -5.969865097712e-01, 2.365081217974e-06, 4.1513e+00, 1.0546e-01, + 2DIAGNOSTIC, 20, -5.969866567040e-01, 2.324324133766e-06, 4.2473e+00, 9.5929e-02, + 2DIAGNOSTIC, 21, -5.969900672806e-01, 2.302420857303e-06, 4.3611e+00, 1.1381e-01, + 2DIAGNOSTIC, 22, -5.969929542099e-01, 2.237903026676e-06, 4.4737e+00, 1.1266e-01, + 2DIAGNOSTIC, 23, -5.969889269291e-01, 1.996923051834e-06, 4.5676e+00, 9.3873e-02, + 2DIAGNOSTIC, 24, -5.969899027206e-01, 1.767980655848e-06, 4.6760e+00, 1.0839e-01, + 2DIAGNOSTIC, 25, -5.969931548032e-01, 1.616002962834e-06, 4.7970e+00, 1.2100e-01, + 2DIAGNOSTIC, 26, -5.969926293799e-01, 1.529841770598e-06, 4.9337e+00, 1.3671e-01, + 2DIAGNOSTIC, 27, -5.969928431636e-01, 1.427105218159e-06, 5.0446e+00, 1.1089e-01, + 2DIAGNOSTIC, 28, -5.969911117005e-01, 1.341774328090e-06, 5.1416e+00, 9.7032e-02, + 2DIAGNOSTIC, 29, -5.969895248535e-01, 1.195426650100e-06, 5.2356e+00, 9.3981e-02, + Elapsed time (stage 1): 5.3605e+00 + + +Total elapsed time: 1.1120e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:06:43 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:06:43 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55915d1a04f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.068, 45.3436, -128.223] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55915d1a5fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f48a34be010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55915d1a1850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.068, 45.3436, -128.223] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55915d19ef30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f489fdff010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55915d1b8b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.068, 45.3436, -128.223] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55915d1a5550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f489c740010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55915d1bdd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.068, 45.3436, -128.223] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55915d1bbc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4899081010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55915d1bff70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.068, 45.3436, -128.223] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55915d1be3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f48959c2010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55915d1c0540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [107.068, 45.3436, -128.223] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55915d1c04d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4892303010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.329285691058e-01, 1.797693134862e+308, 2.1961e-01, 2.1961e-01, + 2DIAGNOSTIC, 2, -6.364093407127e-01, 1.797693134862e+308, 2.2217e-01, 2.5580e-03, + 2DIAGNOSTIC, 3, -6.417806498093e-01, 1.797693134862e+308, 2.2462e-01, 2.4550e-03, + 2DIAGNOSTIC, 4, -6.505072487292e-01, 1.797693134862e+308, 2.2692e-01, 2.3000e-03, + 2DIAGNOSTIC, 5, -6.662001921070e-01, 1.797693134862e+308, 2.2907e-01, 2.1460e-03, + 2DIAGNOSTIC, 6, -6.779773603461e-01, 1.797693134862e+308, 2.3137e-01, 2.3000e-03, + 2DIAGNOSTIC, 7, -6.784941000823e-01, 1.797693134862e+308, 2.3338e-01, 2.0139e-03, + 2DIAGNOSTIC, 8, -6.787074131825e-01, 1.797693134862e+308, 2.3527e-01, 1.8830e-03, + 2DIAGNOSTIC, 9, -6.788491660447e-01, 1.797693134862e+308, 2.3745e-01, 2.1820e-03, + 2DIAGNOSTIC, 10, -6.792718037971e-01, 5.341201437650e-03, 2.3993e-01, 2.4791e-03, + 2DIAGNOSTIC, 11, -6.799043894222e-01, 3.976300126981e-03, 2.4288e-01, 2.9480e-03, + 2DIAGNOSTIC, 12, -6.800329261359e-01, 2.621979250944e-03, 2.4534e-01, 2.4681e-03, + 2DIAGNOSTIC, 13, -6.799100488475e-01, 1.420942936064e-03, 2.4777e-01, 2.4211e-03, + 2DIAGNOSTIC, 14, -6.800085222654e-01, 5.258192492328e-04, 2.5020e-01, 2.4359e-03, + 2DIAGNOSTIC, 15, -6.799133494472e-01, 1.371732704637e-04, 2.5270e-01, 2.4979e-03, + 2DIAGNOSTIC, 16, -6.798013507446e-01, 9.482096914731e-05, 2.5492e-01, 2.2199e-03, + 2DIAGNOSTIC, 17, -6.796954678720e-01, 5.930608762343e-05, 2.5714e-01, 2.2202e-03, + 2DIAGNOSTIC, 18, -6.795846786896e-01, 2.521127027143e-05, 2.5933e-01, 2.1861e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.659924989953e-01, 1.797693134862e+308, 4.9716e-01, 2.3783e-01, + 2DIAGNOSTIC, 2, -5.669876204907e-01, 1.797693134862e+308, 5.1007e-01, 1.2908e-02, + 2DIAGNOSTIC, 3, -5.678117433092e-01, 1.797693134862e+308, 5.2484e-01, 1.4773e-02, + 2DIAGNOSTIC, 4, -5.680766860023e-01, 1.797693134862e+308, 5.3768e-01, 1.2842e-02, + 2DIAGNOSTIC, 5, -5.682353792847e-01, 1.797693134862e+308, 5.5614e-01, 1.8458e-02, + 2DIAGNOSTIC, 6, -5.682552898854e-01, 1.797693134862e+308, 5.6937e-01, 1.3231e-02, + 2DIAGNOSTIC, 7, -5.682521751858e-01, 1.797693134862e+308, 5.8867e-01, 1.9298e-02, + 2DIAGNOSTIC, 8, -5.682481760283e-01, 1.797693134862e+308, 6.0280e-01, 1.4132e-02, + 2DIAGNOSTIC, 9, -5.682484086192e-01, 1.797693134862e+308, 6.1802e-01, 1.5217e-02, + 2DIAGNOSTIC, 10, -5.682436010936e-01, 1.905815114419e-04, 6.3128e-01, 1.3263e-02, + 2DIAGNOSTIC, 11, -5.682312335773e-01, 8.237525378223e-05, 6.4642e-01, 1.5143e-02, + 2DIAGNOSTIC, 12, -5.682383461627e-01, 2.615316893388e-05, 6.5961e-01, 1.3185e-02, + 2DIAGNOSTIC, 13, -5.682451938883e-01, 8.231795926433e-06, 6.7289e-01, 1.3280e-02, + 2DIAGNOSTIC, 14, -5.683001115356e-01, 3.613572913161e-06, 6.8790e-01, 1.5016e-02, + 2DIAGNOSTIC, 15, -5.683511768060e-01, 6.422393032737e-06, 7.0157e-01, 1.3661e-02, + 2DIAGNOSTIC, 16, -5.684020568571e-01, 1.068540917379e-05, 7.1530e-01, 1.3737e-02, + 2DIAGNOSTIC, 17, -5.684850201127e-01, 1.599573365259e-05, 7.3084e-01, 1.5536e-02, + 2DIAGNOSTIC, 18, -5.685671713865e-01, 2.154002312653e-05, 7.4693e-01, 1.6096e-02, + 2DIAGNOSTIC, 19, -5.685375016606e-01, 2.385203636477e-05, 7.6028e-01, 1.3350e-02, + 2DIAGNOSTIC, 20, -5.687095475279e-01, 2.811673184469e-05, 7.8191e-01, 2.1624e-02, + 2DIAGNOSTIC, 21, -5.687311590040e-01, 2.961629440378e-05, 7.9839e-01, 1.6484e-02, + 2DIAGNOSTIC, 22, -5.687190520583e-01, 2.825071173703e-05, 8.1311e-01, 1.4713e-02, + 2DIAGNOSTIC, 23, -5.687063323058e-01, 2.440549938674e-05, 8.2598e-01, 1.2876e-02, + 2DIAGNOSTIC, 24, -5.686805735680e-01, 1.934365277995e-05, 8.3897e-01, 1.2992e-02, + 2DIAGNOSTIC, 25, -5.686827186711e-01, 1.402772698211e-05, 8.5220e-01, 1.3230e-02, + 2DIAGNOSTIC, 26, -5.686725053397e-01, 8.638035190939e-06, 8.6686e-01, 1.4658e-02, + 2DIAGNOSTIC, 27, -5.686751643653e-01, 4.538574554548e-06, 8.7991e-01, 1.3044e-02, + 2DIAGNOSTIC, 28, -5.686650095434e-01, 1.763226939074e-06, 8.9326e-01, 1.3351e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.776453092240e-01, 1.797693134862e+308, 1.2658e+00, 3.7251e-01, + 2DIAGNOSTIC, 2, -4.785033586464e-01, 1.797693134862e+308, 1.3594e+00, 9.3676e-02, + 2DIAGNOSTIC, 3, -4.790101901411e-01, 1.797693134862e+308, 1.4527e+00, 9.3211e-02, + 2DIAGNOSTIC, 4, -4.791217683413e-01, 1.797693134862e+308, 1.5483e+00, 9.5624e-02, + 2DIAGNOSTIC, 5, -4.791559535212e-01, 1.797693134862e+308, 1.6405e+00, 9.2223e-02, + 2DIAGNOSTIC, 6, -4.792094431508e-01, 1.797693134862e+308, 1.7494e+00, 1.0888e-01, + 2DIAGNOSTIC, 7, -4.792469065888e-01, 1.797693134862e+308, 1.9098e+00, 1.6039e-01, + 2DIAGNOSTIC, 8, -4.792504721929e-01, 1.797693134862e+308, 2.0191e+00, 1.0932e-01, + 2DIAGNOSTIC, 9, -4.792492422429e-01, 1.797693134862e+308, 2.1255e+00, 1.0644e-01, + 2DIAGNOSTIC, 10, -4.792494745240e-01, 1.510360485303e-04, 2.2329e+00, 1.0740e-01, + 2DIAGNOSTIC, 11, -4.792489659110e-01, 6.192936199377e-05, 2.3530e+00, 1.2012e-01, + 2DIAGNOSTIC, 12, -4.792487537521e-01, 2.413620051553e-05, 2.4607e+00, 1.0765e-01, + 2DIAGNOSTIC, 13, -4.792456007076e-01, 1.311136566211e-05, 2.5557e+00, 9.4985e-02, + 2DIAGNOSTIC, 14, -4.792456955008e-01, 7.441404773115e-06, 2.6641e+00, 1.0847e-01, + 2DIAGNOSTIC, 15, -4.792466473420e-01, 3.403471125957e-06, 2.7585e+00, 9.4317e-02, + 2DIAGNOSTIC, 16, -4.792467004293e-01, 1.696639806786e-06, 2.8546e+00, 9.6140e-02, + 2DIAGNOSTIC, 17, -4.792458866919e-01, 1.493585637134e-06, 2.9605e+00, 1.0593e-01, + 2DIAGNOSTIC, 18, -4.792472235630e-01, 1.513658863549e-06, 3.0684e+00, 1.0784e-01, + 2DIAGNOSTIC, 19, -4.792465717364e-01, 1.494644416893e-06, 3.1628e+00, 9.4393e-02, + 2DIAGNOSTIC, 20, -4.792462300993e-01, 1.489998387519e-06, 3.2684e+00, 1.0560e-01, + 2DIAGNOSTIC, 21, -4.792457051436e-01, 1.465776770584e-06, 3.3619e+00, 9.3509e-02, + 2DIAGNOSTIC, 22, -4.792414260026e-01, 1.330399254450e-06, 3.4677e+00, 1.0580e-01, + 2DIAGNOSTIC, 23, -4.792427346762e-01, 1.172728080270e-06, 3.5749e+00, 1.0718e-01, + 2DIAGNOSTIC, 24, -4.792428468263e-01, 1.049842891475e-06, 3.6945e+00, 1.1965e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.134054359310e-01, 1.797693134862e+308, 5.0341e+00, 1.3396e+00, + 2DIAGNOSTIC, 2, -4.134863847111e-01, 1.797693134862e+308, 5.5888e+00, 5.5468e-01, + 2DIAGNOSTIC, 3, -4.135232223339e-01, 1.797693134862e+308, 6.1412e+00, 5.5237e-01, + 2DIAGNOSTIC, 4, -4.135403661509e-01, 1.797693134862e+308, 6.7149e+00, 5.7373e-01, + 2DIAGNOSTIC, 5, -4.135837800781e-01, 1.797693134862e+308, 8.0684e+00, 1.3535e+00, + 2DIAGNOSTIC, 6, -4.135840270739e-01, 1.797693134862e+308, 8.6927e+00, 6.2431e-01, + 2DIAGNOSTIC, 7, -4.135837478858e-01, 1.797693134862e+308, 9.3159e+00, 6.2322e-01, + 2DIAGNOSTIC, 8, -4.135837388525e-01, 1.797693134862e+308, 9.9581e+00, 6.4214e-01, + 2DIAGNOSTIC, 9, -4.135836787821e-01, 1.797693134862e+308, 1.0503e+01, 5.4493e-01, + 2DIAGNOSTIC, 10, -4.135833832182e-01, 2.556652828931e-05, 1.1339e+01, 8.3579e-01, + 2DIAGNOSTIC, 11, -4.135834071691e-01, 1.413332620892e-05, 1.1969e+01, 6.3017e-01, + 2DIAGNOSTIC, 12, -4.135832835995e-01, 8.218554267247e-06, 1.2537e+01, 5.6829e-01, + 2DIAGNOSTIC, 13, -4.135828850103e-01, 4.639365814338e-06, 1.3114e+01, 5.7660e-01, + 2DIAGNOSTIC, 14, -4.135829262563e-01, 2.155399410356e-06, 1.3669e+01, 5.5487e-01, + 2DIAGNOSTIC, 15, -4.135829962530e-01, 2.004938659636e-06, 1.4318e+01, 6.4925e-01, + 2DIAGNOSTIC, 16, -4.135830967985e-01, 1.898841382089e-06, 1.4949e+01, 6.3104e-01, + 2DIAGNOSTIC, 17, -4.135827361766e-01, 1.787465150220e-06, 1.5575e+01, 6.2608e-01, + 2DIAGNOSTIC, 18, -4.135826380118e-01, 1.692810683546e-06, 1.6229e+01, 6.5411e-01, + 2DIAGNOSTIC, 19, -4.135825273745e-01, 1.609116650002e-06, 1.6788e+01, 5.5907e-01, + 2DIAGNOSTIC, 20, -4.135824228556e-01, 1.525609974080e-06, 1.7439e+01, 6.5078e-01, + 2DIAGNOSTIC, 21, -4.135823075345e-01, 1.453080821702e-06, 1.7987e+01, 5.4778e-01, + 2DIAGNOSTIC, 22, -4.135820675871e-01, 1.382160600367e-06, 1.8641e+01, 6.5461e-01, + 2DIAGNOSTIC, 23, -4.135819928134e-01, 1.309487447934e-06, 1.9260e+01, 6.1820e-01, + 2DIAGNOSTIC, 24, -4.135819169527e-01, 1.248587931595e-06, 1.9886e+01, 6.2614e-01, + 2DIAGNOSTIC, 25, -4.135818308429e-01, 1.199092658499e-06, 2.0455e+01, 5.6961e-01, + 2DIAGNOSTIC, 26, -4.135817813687e-01, 1.161942141684e-06, 2.1048e+01, 5.9221e-01, + 2DIAGNOSTIC, 27, -4.135817987491e-01, 1.124699043030e-06, 2.1662e+01, 6.1484e-01, + 2DIAGNOSTIC, 28, -4.135819065209e-01, 1.095396146192e-06, 2.2282e+01, 6.1958e-01, + 2DIAGNOSTIC, 29, -4.135815652156e-01, 1.061152163896e-06, 2.2831e+01, 5.4938e-01, + 2DIAGNOSTIC, 30, -4.135814291686e-01, 1.027348615644e-06, 2.3460e+01, 6.2830e-01, + Elapsed time (stage 0): 2.3825e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.796662972093e-01, 1.797693134862e+308, 1.8241e-01, 1.8241e-01, + 2DIAGNOSTIC, 2, -6.812253427975e-01, 1.797693134862e+308, 1.8514e-01, 2.7299e-03, + 2DIAGNOSTIC, 3, -6.835877844904e-01, 1.797693134862e+308, 1.8772e-01, 2.5730e-03, + 2DIAGNOSTIC, 4, -6.863921961379e-01, 1.797693134862e+308, 1.8995e-01, 2.2349e-03, + 2DIAGNOSTIC, 5, -6.883065433685e-01, 1.797693134862e+308, 1.9208e-01, 2.1269e-03, + 2DIAGNOSTIC, 6, -6.897302884147e-01, 1.797693134862e+308, 1.9416e-01, 2.0850e-03, + 2DIAGNOSTIC, 7, -6.912105100061e-01, 1.797693134862e+308, 1.9656e-01, 2.3949e-03, + 2DIAGNOSTIC, 8, -6.921732931782e-01, 1.797693134862e+308, 2.0029e-01, 3.7270e-03, + 2DIAGNOSTIC, 9, -6.922677847572e-01, 1.797693134862e+308, 2.0228e-01, 1.9951e-03, + 2DIAGNOSTIC, 10, -6.924243165492e-01, 1.280934938035e-03, 2.0481e-01, 2.5291e-03, + 2DIAGNOSTIC, 11, -6.925701549729e-01, 9.505509405163e-04, 2.0704e-01, 2.2328e-03, + 2DIAGNOSTIC, 12, -6.925548375361e-01, 6.424494426140e-04, 2.0927e-01, 2.2290e-03, + 2DIAGNOSTIC, 13, -6.926802954226e-01, 4.015860230483e-04, 2.1155e-01, 2.2819e-03, + 2DIAGNOSTIC, 14, -6.930892084968e-01, 2.531121498041e-04, 2.1374e-01, 2.1889e-03, + 2DIAGNOSTIC, 15, -6.932342453305e-01, 1.576637675436e-04, 2.1613e-01, 2.3859e-03, + 2DIAGNOSTIC, 16, -6.937149844679e-01, 1.082401420282e-04, 2.1874e-01, 2.6100e-03, + 2DIAGNOSTIC, 17, -6.941412823639e-01, 1.003536920598e-04, 2.2213e-01, 3.3929e-03, + 2DIAGNOSTIC, 18, -6.943046544480e-01, 1.098776497258e-04, 2.2438e-01, 2.2490e-03, + 2DIAGNOSTIC, 19, -6.944009219503e-01, 1.124550656589e-04, 2.2673e-01, 2.3510e-03, + 2DIAGNOSTIC, 20, -6.947400987070e-01, 1.146397668027e-04, 2.2986e-01, 3.1300e-03, + 2DIAGNOSTIC, 21, -6.949807908429e-01, 1.135109105796e-04, 2.3210e-01, 2.2399e-03, + 2DIAGNOSTIC, 22, -6.951871326439e-01, 1.054680229763e-04, 2.3433e-01, 2.2240e-03, + 2DIAGNOSTIC, 23, -6.957458968527e-01, 1.005499813084e-04, 2.3683e-01, 2.5060e-03, + 2DIAGNOSTIC, 24, -6.962154496289e-01, 1.017172203306e-04, 2.3957e-01, 2.7390e-03, + 2DIAGNOSTIC, 25, -6.965809155543e-01, 1.014875484676e-04, 2.4179e-01, 2.2161e-03, + 2DIAGNOSTIC, 26, -6.966996147470e-01, 1.011583169064e-04, 2.4426e-01, 2.4731e-03, + 2DIAGNOSTIC, 27, -6.967266081954e-01, 9.840214164340e-05, 2.4673e-01, 2.4731e-03, + 2DIAGNOSTIC, 28, -6.967358053513e-01, 8.920582705276e-05, 2.4895e-01, 2.2180e-03, + 2DIAGNOSTIC, 29, -6.967554820291e-01, 7.379193665154e-05, 2.5139e-01, 2.4438e-03, + 2DIAGNOSTIC, 30, -6.967705250958e-01, 5.733581690474e-05, 2.5422e-01, 2.8300e-03, + 2DIAGNOSTIC, 31, -6.967777456265e-01, 3.996949241146e-05, 2.5654e-01, 2.3119e-03, + 2DIAGNOSTIC, 32, -6.967910938443e-01, 2.275777511546e-05, 2.5861e-01, 2.0700e-03, + 2DIAGNOSTIC, 33, -6.967984127686e-01, 1.147471036884e-05, 2.6065e-01, 2.0461e-03, + 2DIAGNOSTIC, 34, -6.968060028731e-01, 5.509084460537e-06, 2.6358e-01, 2.9230e-03, + 2DIAGNOSTIC, 35, -6.969516974595e-01, 5.403251161648e-06, 2.6574e-01, 2.1670e-03, + 2DIAGNOSTIC, 36, -6.969591862477e-01, 6.261990533139e-06, 2.6819e-01, 2.4440e-03, + 2DIAGNOSTIC, 37, -6.969675151485e-01, 6.971816798398e-06, 2.7092e-01, 2.7320e-03, + 2DIAGNOSTIC, 38, -6.969750094852e-01, 7.261483039672e-06, 2.7333e-01, 2.4149e-03, + 2DIAGNOSTIC, 39, -6.969752367590e-01, 7.124922055936e-06, 2.7562e-01, 2.2829e-03, + 2DIAGNOSTIC, 40, -6.969761514030e-01, 6.534690843357e-06, 2.7791e-01, 2.2919e-03, + 2DIAGNOSTIC, 41, -6.969785187822e-01, 5.514151087165e-06, 2.8011e-01, 2.2061e-03, + 2DIAGNOSTIC, 42, -6.969919310097e-01, 4.370997637754e-06, 2.8307e-01, 2.9511e-03, + 2DIAGNOSTIC, 43, -6.969925017180e-01, 3.022616233073e-06, 2.8530e-01, 2.2361e-03, + 2DIAGNOSTIC, 44, -6.969938850039e-01, 1.566037849562e-06, 2.9265e-01, 7.3440e-03, + 2DIAGNOSTIC, 45, -6.969938849936e-01, 1.421650141314e-06, 3.0005e-01, 7.4019e-03, + 2DIAGNOSTIC, 46, -6.969938849936e-01, 1.280246036760e-06, 3.0321e-01, 3.1590e-03, + 2DIAGNOSTIC, 47, -6.969938849936e-01, 1.157782737099e-06, 3.0571e-01, 2.5022e-03, + 2DIAGNOSTIC, 48, -6.969938849936e-01, 1.058386674527e-06, 3.0814e-01, 2.4271e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.626622830687e-01, 1.797693134862e+308, 5.2375e-01, 2.1562e-01, + 2DIAGNOSTIC, 2, -5.640919510927e-01, 1.797693134862e+308, 5.3859e-01, 1.4837e-02, + 2DIAGNOSTIC, 3, -5.654893180566e-01, 1.797693134862e+308, 5.5340e-01, 1.4806e-02, + 2DIAGNOSTIC, 4, -5.664495914382e-01, 1.797693134862e+308, 5.6800e-01, 1.4602e-02, + 2DIAGNOSTIC, 5, -5.667649571412e-01, 1.797693134862e+308, 5.8258e-01, 1.4581e-02, + 2DIAGNOSTIC, 6, -5.669848911895e-01, 1.797693134862e+308, 5.9727e-01, 1.4695e-02, + 2DIAGNOSTIC, 7, -5.673419506971e-01, 1.797693134862e+308, 6.1277e-01, 1.5492e-02, + 2DIAGNOSTIC, 8, -5.675754876497e-01, 1.797693134862e+308, 6.2863e-01, 1.5861e-02, + 2DIAGNOSTIC, 9, -5.676455347556e-01, 1.797693134862e+308, 6.4995e-01, 2.1328e-02, + 2DIAGNOSTIC, 10, -5.677207794978e-01, 5.091231667786e-04, 6.6421e-01, 1.4251e-02, + 2DIAGNOSTIC, 11, -5.678864453055e-01, 3.231554625685e-04, 6.7877e-01, 1.4567e-02, + 2DIAGNOSTIC, 12, -5.679506363756e-01, 2.005834064377e-04, 6.9296e-01, 1.4189e-02, + 2DIAGNOSTIC, 13, -5.680151835846e-01, 1.345076390607e-04, 7.0724e-01, 1.4275e-02, + 2DIAGNOSTIC, 14, -5.681226594118e-01, 1.040982026028e-04, 7.2444e-01, 1.7203e-02, + 2DIAGNOSTIC, 15, -5.682001801525e-01, 8.153631670438e-05, 7.4109e-01, 1.6651e-02, + 2DIAGNOSTIC, 16, -5.682405735729e-01, 6.237921804687e-05, 7.5797e-01, 1.6881e-02, + 2DIAGNOSTIC, 17, -5.682720217626e-01, 5.122812945592e-05, 7.7458e-01, 1.6610e-02, + 2DIAGNOSTIC, 18, -5.683295498059e-01, 4.488358426254e-05, 7.9348e-01, 1.8903e-02, + 2DIAGNOSTIC, 19, -5.683263877312e-01, 3.692308646794e-05, 8.1053e-01, 1.7047e-02, + 2DIAGNOSTIC, 20, -5.683200873933e-01, 2.812514525222e-05, 8.2533e-01, 1.4798e-02, + 2DIAGNOSTIC, 21, -5.683170331203e-01, 2.159101785935e-05, 8.4004e-01, 1.4711e-02, + 2DIAGNOSTIC, 22, -5.683194873505e-01, 1.529022865774e-05, 8.5651e-01, 1.6474e-02, + 2DIAGNOSTIC, 23, -5.683297709408e-01, 9.812622494290e-06, 8.7119e-01, 1.4677e-02, + 2DIAGNOSTIC, 24, -5.684150001757e-01, 7.989081542710e-06, 8.8857e-01, 1.7378e-02, + 2DIAGNOSTIC, 25, -5.684364637736e-01, 7.629481626775e-06, 9.0862e-01, 2.0053e-02, + 2DIAGNOSTIC, 26, -5.684419770117e-01, 7.591635677068e-06, 9.2274e-01, 1.4118e-02, + 2DIAGNOSTIC, 27, -5.684671275804e-01, 7.999888999119e-06, 9.4192e-01, 1.9178e-02, + 2DIAGNOSTIC, 28, -5.684881844139e-01, 9.126067368595e-06, 9.6688e-01, 2.4964e-02, + 2DIAGNOSTIC, 29, -5.684899240788e-01, 9.368191975070e-06, 9.8418e-01, 1.7293e-02, + 2DIAGNOSTIC, 30, -5.684848859375e-01, 8.626290249385e-06, 9.9896e-01, 1.4789e-02, + 2DIAGNOSTIC, 31, -5.684683576802e-01, 6.927249840687e-06, 1.0140e+00, 1.5064e-02, + 2DIAGNOSTIC, 32, -5.684922046092e-01, 5.202638787422e-06, 1.0292e+00, 1.5160e-02, + 2DIAGNOSTIC, 33, -5.684998796789e-01, 3.402774764377e-06, 1.0440e+00, 1.4763e-02, + 2DIAGNOSTIC, 34, -5.685049979742e-01, 2.801468407868e-06, 1.0605e+00, 1.6565e-02, + 2DIAGNOSTIC, 35, -5.685071401607e-01, 2.408814178519e-06, 1.0749e+00, 1.4360e-02, + 2DIAGNOSTIC, 36, -5.684971598968e-01, 1.831902562283e-06, 1.0897e+00, 1.4813e-02, + 2DIAGNOSTIC, 37, -5.685028073089e-01, 1.604077035221e-06, 1.1045e+00, 1.4830e-02, + 2DIAGNOSTIC, 38, -5.685116995338e-01, 1.700559716239e-06, 1.1198e+00, 1.5275e-02, + 2DIAGNOSTIC, 39, -5.685420829208e-01, 2.120373190837e-06, 1.1374e+00, 1.7626e-02, + 2DIAGNOSTIC, 40, -5.685578327540e-01, 2.531353733664e-06, 1.1599e+00, 2.2438e-02, + 2DIAGNOSTIC, 41, -5.685467658552e-01, 2.416066149563e-06, 1.1739e+00, 1.4023e-02, + 2DIAGNOSTIC, 42, -5.685474243430e-01, 2.451136295965e-06, 1.1881e+00, 1.4263e-02, + 2DIAGNOSTIC, 43, -5.685491660743e-01, 2.427029675796e-06, 1.2044e+00, 1.6281e-02, + 2DIAGNOSTIC, 44, -5.685502320465e-01, 2.302724985526e-06, 1.2197e+00, 1.5231e-02, + 2DIAGNOSTIC, 45, -5.685398589066e-01, 1.943217945954e-06, 1.2354e+00, 1.5737e-02, + 2DIAGNOSTIC, 46, -5.685651855055e-01, 1.657900601887e-06, 1.2562e+00, 2.0779e-02, + 2DIAGNOSTIC, 47, -5.685419207359e-01, 1.100052456911e-06, 1.2708e+00, 1.4655e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.781161675029e-01, 1.797693134862e+308, 1.6613e+00, 3.9043e-01, + 2DIAGNOSTIC, 2, -4.787111719401e-01, 1.797693134862e+308, 1.7607e+00, 9.9454e-02, + 2DIAGNOSTIC, 3, -4.791023239174e-01, 1.797693134862e+308, 1.8595e+00, 9.8741e-02, + 2DIAGNOSTIC, 4, -4.792773535155e-01, 1.797693134862e+308, 1.9593e+00, 9.9842e-02, + 2DIAGNOSTIC, 5, -4.794797778523e-01, 1.797693134862e+308, 2.0852e+00, 1.2586e-01, + 2DIAGNOSTIC, 6, -4.795378815505e-01, 1.797693134862e+308, 2.1862e+00, 1.0103e-01, + 2DIAGNOSTIC, 7, -4.795652160052e-01, 1.797693134862e+308, 2.2874e+00, 1.0118e-01, + 2DIAGNOSTIC, 8, -4.795974260965e-01, 1.797693134862e+308, 2.4152e+00, 1.2785e-01, + 2DIAGNOSTIC, 9, -4.796089712990e-01, 1.797693134862e+308, 2.5157e+00, 1.0045e-01, + 2DIAGNOSTIC, 10, -4.796212545141e-01, 1.680994104755e-04, 2.6323e+00, 1.1662e-01, + 2DIAGNOSTIC, 11, -4.796338797949e-01, 9.282712191071e-05, 2.7261e+00, 9.3853e-02, + 2DIAGNOSTIC, 12, -4.796415198711e-01, 5.149494333780e-05, 2.8322e+00, 1.0609e-01, + 2DIAGNOSTIC, 13, -4.796571793271e-01, 3.056981570791e-05, 2.9409e+00, 1.0871e-01, + 2DIAGNOSTIC, 14, -4.796630119544e-01, 1.752191157582e-05, 3.0679e+00, 1.2700e-01, + 2DIAGNOSTIC, 15, -4.796624211642e-01, 1.276182635600e-05, 3.1824e+00, 1.1448e-01, + 2DIAGNOSTIC, 16, -4.796631933682e-01, 9.797215940438e-06, 3.2992e+00, 1.1676e-01, + 2DIAGNOSTIC, 17, -4.796627698026e-01, 7.374904032645e-06, 3.4133e+00, 1.1409e-01, + 2DIAGNOSTIC, 18, -4.796606332052e-01, 5.694726308084e-06, 3.5121e+00, 9.8835e-02, + 2DIAGNOSTIC, 19, -4.796611442535e-01, 4.198717807456e-06, 3.6119e+00, 9.9841e-02, + 2DIAGNOSTIC, 20, -4.796616549038e-01, 2.994777876603e-06, 3.7145e+00, 1.0258e-01, + 2DIAGNOSTIC, 21, -4.796623064262e-01, 2.149899626179e-06, 3.8161e+00, 1.0153e-01, + 2DIAGNOSTIC, 22, -4.796632235284e-01, 1.542923780101e-06, 3.9233e+00, 1.0725e-01, + 2DIAGNOSTIC, 23, -4.796689443167e-01, 1.527203529091e-06, 4.0286e+00, 1.0528e-01, + 2DIAGNOSTIC, 24, -4.796726422164e-01, 1.731611173145e-06, 4.1281e+00, 9.9547e-02, + 2DIAGNOSTIC, 25, -4.797003574338e-01, 2.522318628448e-06, 4.3245e+00, 1.9638e-01, + 2DIAGNOSTIC, 26, -4.796989253281e-01, 3.104204260487e-06, 4.4597e+00, 1.3522e-01, + 2DIAGNOSTIC, 27, -4.796977514157e-01, 3.441144610247e-06, 4.5882e+00, 1.2850e-01, + 2DIAGNOSTIC, 28, -4.796966105952e-01, 3.478771420519e-06, 4.7027e+00, 1.1450e-01, + 2DIAGNOSTIC, 29, -4.796956267500e-01, 3.279151120236e-06, 4.8200e+00, 1.1725e-01, + 2DIAGNOSTIC, 30, -4.796945535352e-01, 2.867623823490e-06, 4.9238e+00, 1.0384e-01, + 2DIAGNOSTIC, 31, -4.796936786617e-01, 2.307870779157e-06, 5.0513e+00, 1.2745e-01, + 2DIAGNOSTIC, 32, -4.796939408675e-01, 1.690163839489e-06, 5.1681e+00, 1.1679e-01, + 2DIAGNOSTIC, 33, -4.796913796805e-01, 1.104186825564e-06, 5.2693e+00, 1.0123e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.134112656416e-01, 1.797693134862e+308, 6.6102e+00, 1.3409e+00, + 2DIAGNOSTIC, 2, -4.137016493766e-01, 1.797693134862e+308, 7.2253e+00, 6.1513e-01, + 2DIAGNOSTIC, 3, -4.139057181218e-01, 1.797693134862e+308, 7.8346e+00, 6.0924e-01, + 2DIAGNOSTIC, 4, -4.140770395762e-01, 1.797693134862e+308, 8.5962e+00, 7.6167e-01, + 2DIAGNOSTIC, 5, -4.141453535115e-01, 1.797693134862e+308, 9.2095e+00, 6.1321e-01, + 2DIAGNOSTIC, 6, -4.142498400511e-01, 1.797693134862e+308, 1.0873e+01, 1.6636e+00, + 2DIAGNOSTIC, 7, -4.142499727549e-01, 1.797693134862e+308, 1.1578e+01, 7.0500e-01, + 2DIAGNOSTIC, 8, -4.142499034391e-01, 1.797693134862e+308, 1.2261e+01, 6.8267e-01, + 2DIAGNOSTIC, 9, -4.142494663733e-01, 1.797693134862e+308, 1.2953e+01, 6.9223e-01, + 2DIAGNOSTIC, 10, -4.142493783133e-01, 1.168759270789e-04, 1.3820e+01, 8.6753e-01, + 2DIAGNOSTIC, 11, -4.142491564501e-01, 6.639038614321e-05, 1.4583e+01, 7.6242e-01, + 2DIAGNOSTIC, 12, -4.142490484477e-01, 3.505657969258e-05, 1.5254e+01, 6.7087e-01, + 2DIAGNOSTIC, 13, -4.142488113629e-01, 1.625490123539e-05, 1.5886e+01, 6.3238e-01, + 2DIAGNOSTIC, 14, -4.142486101472e-01, 7.241204088487e-06, 1.6510e+01, 6.2431e-01, + 2DIAGNOSTIC, 15, -4.142487603318e-01, 1.971791506961e-06, 1.7200e+01, 6.8907e-01, + 2DIAGNOSTIC, 16, -4.142483952938e-01, 1.840321090602e-06, 1.7964e+01, 7.6445e-01, + 2DIAGNOSTIC, 17, -4.142485109191e-01, 1.748323128915e-06, 1.8681e+01, 7.1718e-01, + 2DIAGNOSTIC, 18, -4.142481922779e-01, 1.663452825373e-06, 1.9399e+01, 7.1814e-01, + 2DIAGNOSTIC, 19, -4.142480667685e-01, 1.577088103263e-06, 2.0089e+01, 6.8960e-01, + 2DIAGNOSTIC, 20, -4.142477204677e-01, 1.493605699752e-06, 2.0880e+01, 7.9124e-01, + 2DIAGNOSTIC, 21, -4.142478130970e-01, 1.423087510284e-06, 2.1634e+01, 7.5384e-01, + 2DIAGNOSTIC, 22, -4.142477104572e-01, 1.360958262524e-06, 2.2313e+01, 6.7901e-01, + 2DIAGNOSTIC, 23, -4.142474482876e-01, 1.297476934004e-06, 2.2953e+01, 6.3973e-01, + 2DIAGNOSTIC, 24, -4.142473494744e-01, 1.238914957874e-06, 2.3572e+01, 6.1892e-01, + 2DIAGNOSTIC, 25, -4.142472821118e-01, 1.195751012636e-06, 2.4193e+01, 6.2186e-01, + 2DIAGNOSTIC, 26, -4.142474125545e-01, 1.156614746901e-06, 2.4833e+01, 6.3907e-01, + 2DIAGNOSTIC, 27, -4.142474866060e-01, 1.131469938007e-06, 2.5679e+01, 8.4640e-01, + 2DIAGNOSTIC, 28, -4.142475595829e-01, 1.106632452820e-06, 2.6366e+01, 6.8691e-01, + 2DIAGNOSTIC, 29, -4.142473567605e-01, 1.078850279411e-06, 2.7068e+01, 7.0215e-01, + 2DIAGNOSTIC, 30, -4.142473350659e-01, 1.046243181008e-06, 2.7772e+01, 7.0388e-01, + 2DIAGNOSTIC, 31, -4.142471921235e-01, 1.015872234056e-06, 2.8379e+01, 6.0680e-01, + Elapsed time (stage 1): 2.8761e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.113734858323e-01, 1.797693134862e+308, 2.6502e-01, 2.6502e-01, + 1DIAGNOSTIC, 2, -9.185085432409e-01, 1.797693134862e+308, 3.6161e-01, 9.6587e-02, + 1DIAGNOSTIC, 3, -9.245001171460e-01, 1.797693134862e+308, 4.5961e-01, 9.7995e-02, + 1DIAGNOSTIC, 4, -9.295198766617e-01, 1.797693134862e+308, 5.5467e-01, 9.5068e-02, + 1DIAGNOSTIC, 5, -9.338523889196e-01, 1.797693134862e+308, 6.5025e-01, 9.5574e-02, + 1DIAGNOSTIC, 6, -9.372212714505e-01, 1.797693134862e+308, 7.5551e-01, 1.0526e-01, + 1DIAGNOSTIC, 7, -9.401601394412e-01, 1.797693134862e+308, 8.5292e-01, 9.7416e-02, + 1DIAGNOSTIC, 8, -9.426781066114e-01, 1.797693134862e+308, 9.6284e-01, 1.0992e-01, + 1DIAGNOSTIC, 9, -9.449368628432e-01, 1.797693134862e+308, 1.0708e+00, 1.0796e-01, + 1DIAGNOSTIC, 10, -9.469007070186e-01, 2.345858874536e-03, 1.1683e+00, 9.7502e-02, + 1DIAGNOSTIC, 11, -9.485325175682e-01, 1.800917212892e-03, 1.2699e+00, 1.0162e-01, + 1DIAGNOSTIC, 12, -9.500662236181e-01, 1.403813032585e-03, 1.3651e+00, 9.5190e-02, + 1DIAGNOSTIC, 13, -9.513724011083e-01, 1.110374224521e-03, 1.4633e+00, 9.8224e-02, + 1DIAGNOSTIC, 14, -9.524357830539e-01, 8.887356113779e-04, 1.5592e+00, 9.5885e-02, + 1DIAGNOSTIC, 15, -9.533612370336e-01, 7.211202907695e-04, 1.6627e+00, 1.0345e-01, + 1DIAGNOSTIC, 16, -9.541754255224e-01, 5.869623157388e-04, 1.7592e+00, 9.6530e-02, + 1DIAGNOSTIC, 17, -9.549137522053e-01, 4.795361311381e-04, 1.8638e+00, 1.0457e-01, + 1DIAGNOSTIC, 18, -9.555375072132e-01, 3.920795127206e-04, 1.9692e+00, 1.0545e-01, + 1DIAGNOSTIC, 19, -9.561633353696e-01, 3.230589806219e-04, 2.0689e+00, 9.9640e-02, + 1DIAGNOSTIC, 20, -9.567354368080e-01, 2.689751138980e-04, 2.1700e+00, 1.0117e-01, + 1DIAGNOSTIC, 21, -9.572511148399e-01, 2.255877530346e-04, 2.2730e+00, 1.0294e-01, + 1DIAGNOSTIC, 22, -9.577224106588e-01, 1.923707339657e-04, 2.3680e+00, 9.5001e-02, + 1DIAGNOSTIC, 23, -9.581594802483e-01, 1.667640133265e-04, 2.4668e+00, 9.8793e-02, + 1DIAGNOSTIC, 24, -9.585642909610e-01, 1.459841582274e-04, 2.5667e+00, 9.9954e-02, + 1DIAGNOSTIC, 25, -9.589452682600e-01, 1.288067794757e-04, 2.6618e+00, 9.5061e-02, + 1DIAGNOSTIC, 26, -9.593025686629e-01, 1.143337038367e-04, 2.7617e+00, 9.9873e-02, + 1DIAGNOSTIC, 27, -9.596351491814e-01, 1.020710864912e-04, 2.8643e+00, 1.0259e-01, + 1DIAGNOSTIC, 28, -9.599382100256e-01, 9.097999996589e-05, 2.9603e+00, 9.6013e-02, + 1DIAGNOSTIC, 29, -9.602454872627e-01, 8.171247183378e-05, 3.0682e+00, 1.0797e-01, + 1DIAGNOSTIC, 30, -9.605046530580e-01, 7.364527835190e-05, 3.1720e+00, 1.0378e-01, + 1DIAGNOSTIC, 31, -9.607672963660e-01, 6.666978532115e-05, 3.2765e+00, 1.0444e-01, + 1DIAGNOSTIC, 32, -9.610381474216e-01, 6.077895893736e-05, 3.3772e+00, 1.0072e-01, + 1DIAGNOSTIC, 33, -9.611583847494e-01, 5.455423727121e-05, 3.4786e+00, 1.0141e-01, + 1DIAGNOSTIC, 34, -9.612803696474e-01, 4.821202071630e-05, 3.5760e+00, 9.7443e-02, + 1DIAGNOSTIC, 35, -9.610083861297e-01, 3.863214038764e-05, 3.6746e+00, 9.8566e-02, + 1DIAGNOSTIC, 36, -9.609726466391e-01, 2.870828505559e-05, 3.7710e+00, 9.6368e-02, + 1DIAGNOSTIC, 37, -9.607143339062e-01, 1.722355948967e-05, 3.8665e+00, 9.5575e-02, + 1DIAGNOSTIC, 38, -9.607450464212e-01, 7.398204028803e-06, 3.9652e+00, 9.8681e-02, + 1DIAGNOSTIC, 39, -9.605378159647e-01, -1.821416440860e-06, 4.0613e+00, 9.6122e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.105760716169e-01, 1.797693134862e+308, 4.9146e+00, 8.5328e-01, + 1DIAGNOSTIC, 2, -9.151520115669e-01, 1.797693134862e+308, 5.5871e+00, 6.7248e-01, + 1DIAGNOSTIC, 3, -9.182934311892e-01, 1.797693134862e+308, 6.2265e+00, 6.3942e-01, + 1DIAGNOSTIC, 4, -9.209123985191e-01, 1.797693134862e+308, 6.8929e+00, 6.6635e-01, + 1DIAGNOSTIC, 5, -9.231008221925e-01, 1.797693134862e+308, 7.5687e+00, 6.7585e-01, + 1DIAGNOSTIC, 6, -9.248241194084e-01, 1.797693134862e+308, 8.2579e+00, 6.8913e-01, + 1DIAGNOSTIC, 7, -9.263260732639e-01, 1.797693134862e+308, 8.9457e+00, 6.8788e-01, + 1DIAGNOSTIC, 8, -9.276498762205e-01, 1.797693134862e+308, 9.6275e+00, 6.8179e-01, + 1DIAGNOSTIC, 9, -9.288263041304e-01, 1.797693134862e+308, 1.0313e+01, 6.8564e-01, + 1DIAGNOSTIC, 10, -9.298992554394e-01, 1.255493474877e-03, 1.1022e+01, 7.0920e-01, + 1DIAGNOSTIC, 11, -9.308710620265e-01, 9.483465109847e-04, 1.1696e+01, 6.7399e-01, + 1DIAGNOSTIC, 12, -9.317617459321e-01, 7.467128777937e-04, 1.2365e+01, 6.6829e-01, + 1DIAGNOSTIC, 13, -9.325695672389e-01, 6.013750353028e-04, 1.3052e+01, 6.8701e-01, + 1DIAGNOSTIC, 14, -9.333103345750e-01, 4.953457975143e-04, 1.3732e+01, 6.8047e-01, + 1DIAGNOSTIC, 15, -9.339991956371e-01, 4.167722743576e-04, 1.4427e+01, 6.9509e-01, + 1DIAGNOSTIC, 16, -9.346298516904e-01, 3.546582079936e-04, 1.5119e+01, 6.9179e-01, + 1DIAGNOSTIC, 17, -9.352226332466e-01, 3.047710176014e-04, 1.5799e+01, 6.8017e-01, + 1DIAGNOSTIC, 18, -9.357585419942e-01, 2.637715985548e-04, 1.6482e+01, 6.8292e-01, + 1DIAGNOSTIC, 19, -9.362562229917e-01, 2.295089137482e-04, 1.7169e+01, 6.8645e-01, + 1DIAGNOSTIC, 20, -9.367122177031e-01, 2.006524962883e-04, 1.7844e+01, 6.7541e-01, + 1DIAGNOSTIC, 21, -9.371273684437e-01, 1.759854117294e-04, 1.8529e+01, 6.8482e-01, + 1DIAGNOSTIC, 22, -9.375202702092e-01, 1.549238798234e-04, 1.9221e+01, 6.9195e-01, + 1DIAGNOSTIC, 23, -9.378837818020e-01, 1.367316926928e-04, 1.9899e+01, 6.7833e-01, + 1DIAGNOSTIC, 24, -9.382228020063e-01, 1.209640915703e-04, 2.0584e+01, 6.8474e-01, + 1DIAGNOSTIC, 25, -9.385306185819e-01, 1.072688559115e-04, 2.1258e+01, 6.7374e-01, + 1DIAGNOSTIC, 26, -9.388159822756e-01, 9.529634969248e-05, 2.1941e+01, 6.8320e-01, + 1DIAGNOSTIC, 27, -9.390885410891e-01, 8.502763311217e-05, 2.2621e+01, 6.7979e-01, + 1DIAGNOSTIC, 28, -9.393398642324e-01, 7.606216296244e-05, 2.3301e+01, 6.8003e-01, + 1DIAGNOSTIC, 29, -9.395751409049e-01, 6.826175677712e-05, 2.3983e+01, 6.8217e-01, + 1DIAGNOSTIC, 30, -9.397959146510e-01, 6.143654477646e-05, 2.4665e+01, 6.8240e-01, + 1DIAGNOSTIC, 31, -9.400096170060e-01, 5.545192260405e-05, 2.5350e+01, 6.8510e-01, + 1DIAGNOSTIC, 32, -9.402024062309e-01, 5.019677900746e-05, 2.6041e+01, 6.9076e-01, + 1DIAGNOSTIC, 33, -9.403706593726e-01, 4.544547269486e-05, 2.6723e+01, 6.8240e-01, + 1DIAGNOSTIC, 34, -9.405404000120e-01, 4.126284724727e-05, 2.7400e+01, 6.7691e-01, + 1DIAGNOSTIC, 35, -9.406999447006e-01, 3.750706180463e-05, 2.8071e+01, 6.7028e-01, + 1DIAGNOSTIC, 36, -9.408487248177e-01, 3.410549706856e-05, 2.8743e+01, 6.7271e-01, + 1DIAGNOSTIC, 37, -9.409893394048e-01, 3.108749006452e-05, 2.9416e+01, 6.7308e-01, + 1DIAGNOSTIC, 38, -9.411223515012e-01, 2.839520921694e-05, 3.0089e+01, 6.7248e-01, + 1DIAGNOSTIC, 39, -9.412440983555e-01, 2.596857741020e-05, 3.0765e+01, 6.7592e-01, + 1DIAGNOSTIC, 40, -9.413651266098e-01, 2.383205687265e-05, 3.1437e+01, 6.7192e-01, + 1DIAGNOSTIC, 41, -9.414743255504e-01, 2.196798582410e-05, 3.2109e+01, 6.7268e-01, + 1DIAGNOSTIC, 42, -9.415671184617e-01, 2.021512739947e-05, 3.2782e+01, 6.7311e-01, + 1DIAGNOSTIC, 43, -9.416631993833e-01, 1.853373116180e-05, 3.3462e+01, 6.7938e-01, + 1DIAGNOSTIC, 44, -9.417688646712e-01, 1.710922484519e-05, 3.4135e+01, 6.7279e-01, + 1DIAGNOSTIC, 45, -9.418571671122e-01, 1.583169602216e-05, 3.4797e+01, 6.6237e-01, + 1DIAGNOSTIC, 46, -9.419407450384e-01, 1.468060221897e-05, 3.5459e+01, 6.6237e-01, + 1DIAGNOSTIC, 47, -9.420119138169e-01, 1.359476932321e-05, 3.6141e+01, 6.8177e-01, + 1DIAGNOSTIC, 48, -9.420775317640e-01, 1.256135978799e-05, 3.6802e+01, 6.6054e-01, + 1DIAGNOSTIC, 49, -9.421416472234e-01, 1.156615034888e-05, 3.7484e+01, 6.8278e-01, + 1DIAGNOSTIC, 50, -9.422110601014e-01, 1.070677717137e-05, 3.8167e+01, 6.8227e-01, + 1DIAGNOSTIC, 51, -9.422681101223e-01, 9.894752592637e-06, 3.8838e+01, 6.7128e-01, + 1DIAGNOSTIC, 52, -9.423214670140e-01, 9.069772844077e-06, 3.9517e+01, 6.7917e-01, + 1DIAGNOSTIC, 53, -9.423682996309e-01, 8.272687180597e-06, 4.0194e+01, 6.7729e-01, + 1DIAGNOSTIC, 54, -9.424028468253e-01, 7.547888171852e-06, 4.0878e+01, 6.8362e-01, + 1DIAGNOSTIC, 55, -9.424469916396e-01, 6.903725005364e-06, 4.1545e+01, 6.6721e-01, + 1DIAGNOSTIC, 56, -9.424853905433e-01, 6.327372223610e-06, 4.2222e+01, 6.7657e-01, + 1DIAGNOSTIC, 57, -9.425245189595e-01, 5.798852220060e-06, 4.2910e+01, 6.8839e-01, + 1DIAGNOSTIC, 58, -9.425656987229e-01, 5.338170574586e-06, 4.3593e+01, 6.8232e-01, + 1DIAGNOSTIC, 59, -9.426079822575e-01, 4.972836117279e-06, 4.4262e+01, 6.6965e-01, + 1DIAGNOSTIC, 60, -9.426383570264e-01, 4.691584239821e-06, 4.4936e+01, 6.7353e-01, + 1DIAGNOSTIC, 61, -9.426659398196e-01, 4.435273047478e-06, 4.5612e+01, 6.7579e-01, + 1DIAGNOSTIC, 62, -9.426907995140e-01, 4.189256885442e-06, 4.6282e+01, 6.7013e-01, + 1DIAGNOSTIC, 63, -9.427166175037e-01, 3.943879202412e-06, 4.6965e+01, 6.8345e-01, + 1DIAGNOSTIC, 64, -9.427397386665e-01, 3.643306977941e-06, 4.7641e+01, 6.7635e-01, + 1DIAGNOSTIC, 65, -9.427609966727e-01, 3.351305022770e-06, 4.8316e+01, 6.7406e-01, + 1DIAGNOSTIC, 66, -9.427833953304e-01, 3.069756603039e-06, 4.8988e+01, 6.7231e-01, + 1DIAGNOSTIC, 67, -9.428038948234e-01, 2.813810711738e-06, 4.9668e+01, 6.7976e-01, + 1DIAGNOSTIC, 68, -9.428230419203e-01, 2.604875844178e-06, 5.0355e+01, 6.8779e-01, + 1DIAGNOSTIC, 69, -9.428412285025e-01, 2.459178373899e-06, 5.1038e+01, 6.8253e-01, + 1DIAGNOSTIC, 70, -9.428557683733e-01, 2.317367164790e-06, 5.1740e+01, 7.0194e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.898123485026e-01, 1.797693134862e+308, 5.7511e+01, 5.7713e+00, + 1DIAGNOSTIC, 2, -8.933376641321e-01, 1.797693134862e+308, 6.2931e+01, 5.4200e+00, + 1DIAGNOSTIC, 3, -8.968889921605e-01, 1.797693134862e+308, 6.8473e+01, 5.5423e+00, + 1DIAGNOSTIC, 4, -9.000987954322e-01, 1.797693134862e+308, 7.3954e+01, 5.4801e+00, + 1DIAGNOSTIC, 5, -9.028850143671e-01, 1.797693134862e+308, 7.9330e+01, 5.3767e+00, + 1DIAGNOSTIC, 6, -9.053331639944e-01, 1.797693134862e+308, 8.4643e+01, 5.3129e+00, + 1DIAGNOSTIC, 7, -9.075285387812e-01, 1.797693134862e+308, 9.0003e+01, 5.3596e+00, + 1DIAGNOSTIC, 8, -9.095428428858e-01, 1.797693134862e+308, 9.5372e+01, 5.3689e+00, + 1DIAGNOSTIC, 9, -9.112378904880e-01, 1.797693134862e+308, 1.0071e+02, 5.3431e+00, + 1DIAGNOSTIC, 10, -9.128054573678e-01, 1.620671521863e-03, 1.0607e+02, 5.3585e+00, + 1DIAGNOSTIC, 11, -9.142437459058e-01, 1.320595316374e-03, 1.1143e+02, 5.3595e+00, + 1DIAGNOSTIC, 12, -9.155883938664e-01, 1.078622186128e-03, 1.1678e+02, 5.3511e+00, + 1DIAGNOSTIC, 13, -9.167259851494e-01, 8.887947645959e-04, 1.2219e+02, 5.4046e+00, + 1DIAGNOSTIC, 14, -9.178196930678e-01, 7.411414586355e-04, 1.2754e+02, 5.3513e+00, + 1DIAGNOSTIC, 15, -9.188520058395e-01, 6.247506038991e-04, 1.3290e+02, 5.3580e+00, + 1DIAGNOSTIC, 16, -9.197919710981e-01, 5.313979159545e-04, 1.3825e+02, 5.3521e+00, + 1DIAGNOSTIC, 17, -9.206453831951e-01, 4.557592176583e-04, 1.4377e+02, 5.5196e+00, + 1DIAGNOSTIC, 18, -9.214218590279e-01, 3.946137411339e-04, 1.4914e+02, 5.3743e+00, + 1DIAGNOSTIC, 19, -9.221346415151e-01, 3.426821896748e-04, 1.5451e+02, 5.3620e+00, + 1DIAGNOSTIC, 20, -9.227925228553e-01, 2.986001501412e-04, 1.5983e+02, 5.3223e+00, + 1DIAGNOSTIC, 21, -9.234042143543e-01, 2.611375860576e-04, 1.6519e+02, 5.3649e+00, + 1DIAGNOSTIC, 22, -9.239730888477e-01, 2.296904799858e-04, 1.7053e+02, 5.3395e+00, + 1DIAGNOSTIC, 23, -9.244982884788e-01, 2.018978094146e-04, 1.7589e+02, 5.3536e+00, + 1DIAGNOSTIC, 24, -9.249652052369e-01, 1.776410749351e-04, 1.8124e+02, 5.3573e+00, + 1DIAGNOSTIC, 25, -9.253786300236e-01, 1.565665475780e-04, 1.8663e+02, 5.3905e+00, + 1DIAGNOSTIC, 26, -9.257437380182e-01, 1.379477954027e-04, 1.9200e+02, 5.3628e+00, + 1DIAGNOSTIC, 27, -9.260699914256e-01, 1.212611020190e-04, 1.9734e+02, 5.3452e+00, + 1DIAGNOSTIC, 28, -9.263606876339e-01, 1.061484843119e-04, 2.0269e+02, 5.3486e+00, + 1DIAGNOSTIC, 29, -9.266242814872e-01, 9.250177003026e-05, 2.0806e+02, 5.3655e+00, + 1DIAGNOSTIC, 30, -9.268603758041e-01, 8.027186056327e-05, 2.1340e+02, 5.3457e+00, + 1DIAGNOSTIC, 31, -9.270754933058e-01, 6.951815734815e-05, 2.1875e+02, 5.3517e+00, + 1DIAGNOSTIC, 32, -9.272758497082e-01, 6.031800595655e-05, 2.2409e+02, 5.3330e+00, + 1DIAGNOSTIC, 33, -9.274583800242e-01, 5.262258877777e-05, 2.2945e+02, 5.3681e+00, + 1DIAGNOSTIC, 34, -9.276260608919e-01, 4.619526224575e-05, 2.3478e+02, 5.3276e+00, + 1DIAGNOSTIC, 35, -9.277854089751e-01, 4.084929712299e-05, 2.4014e+02, 5.3607e+00, + 1DIAGNOSTIC, 36, -9.279357650513e-01, 3.638656429461e-05, 2.4550e+02, 5.3583e+00, + 1DIAGNOSTIC, 37, -9.280729909558e-01, 3.261986794551e-05, 2.5089e+02, 5.3919e+00, + 1DIAGNOSTIC, 38, -9.281808500675e-01, 2.923422205070e-05, 2.5627e+02, 5.3724e+00, + 1DIAGNOSTIC, 39, -9.282711256077e-01, 2.609480958958e-05, 2.6162e+02, 5.3514e+00, + 1DIAGNOSTIC, 40, -9.283373928688e-01, 2.301410647580e-05, 2.6697e+02, 5.3508e+00, + 1DIAGNOSTIC, 41, -9.283703052216e-01, 1.981051056526e-05, 2.7234e+02, 5.3734e+00, + 1DIAGNOSTIC, 42, -9.283703816689e-01, 1.640116008181e-05, 2.7768e+02, 5.3426e+00, + 1DIAGNOSTIC, 43, -9.283480198155e-01, 1.279800290572e-05, 2.8306e+02, 5.3754e+00, + 1DIAGNOSTIC, 44, -9.283073787404e-01, 9.090067958826e-06, 2.8843e+02, 5.3725e+00, + 1DIAGNOSTIC, 45, -9.282504283086e-01, 5.441238034403e-06, 2.9380e+02, 5.3700e+00, + 1DIAGNOSTIC, 46, -9.281793867685e-01, 2.024813858879e-06, 2.9913e+02, 5.3288e+00, + 1DIAGNOSTIC, 47, -9.281030267543e-01, -9.738502389812e-07, 3.0450e+02, 5.3734e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.910552401935e-01, 1.797693134862e+308, 3.4830e+02, 4.3792e+01, + 1DIAGNOSTIC, 2, -8.930295213359e-01, 1.797693134862e+308, 3.9160e+02, 4.3302e+01, + 1DIAGNOSTIC, 3, -8.950792527004e-01, 1.797693134862e+308, 4.3491e+02, 4.3317e+01, + 1DIAGNOSTIC, 4, -8.970226032629e-01, 1.797693134862e+308, 4.7827e+02, 4.3359e+01, + 1DIAGNOSTIC, 5, -8.988428551308e-01, 1.797693134862e+308, 5.2150e+02, 4.3230e+01, + 1DIAGNOSTIC, 6, -9.005221886261e-01, 1.797693134862e+308, 5.6478e+02, 4.3277e+01, + 1DIAGNOSTIC, 7, -9.020831622159e-01, 1.797693134862e+308, 6.0794e+02, 4.3160e+01, + 1DIAGNOSTIC, 8, -9.035148090167e-01, 1.797693134862e+308, 6.5123e+02, 4.3288e+01, + 1DIAGNOSTIC, 9, -9.048512007850e-01, 1.797693134862e+308, 6.9445e+02, 4.3222e+01, + 1DIAGNOSTIC, 10, -9.060210969563e-01, 1.073265000919e-03, 7.3798e+02, 4.3524e+01, + 1DIAGNOSTIC, 11, -9.070205177896e-01, 9.068680021138e-04, 7.8141e+02, 4.3432e+01, + 1DIAGNOSTIC, 12, -9.078804782701e-01, 7.609297977010e-04, 8.2473e+02, 4.3324e+01, + 1DIAGNOSTIC, 13, -9.085397644885e-01, 6.340292678737e-04, 8.6806e+02, 4.3326e+01, + 1DIAGNOSTIC, 14, -9.090326762626e-01, 5.221932883584e-04, 9.1171e+02, 4.3652e+01, + 1DIAGNOSTIC, 15, -9.096275376819e-01, 4.280818983894e-04, 9.5555e+02, 4.3844e+01, + 1DIAGNOSTIC, 16, -9.100963404483e-01, 3.484407073651e-04, 9.9936e+02, 4.3812e+01, + 1DIAGNOSTIC, 17, -9.106587111661e-01, 2.851954976008e-04, 1.0431e+03, 4.3688e+01, + 1DIAGNOSTIC, 18, -9.110630818639e-01, 2.345119352111e-04, 1.0868e+03, 4.3706e+01, + 1DIAGNOSTIC, 19, -9.115382700841e-01, 1.973240353409e-04, 1.1304e+03, 4.3641e+01, + 1DIAGNOSTIC, 20, -9.118594117118e-01, 1.688097902466e-04, 1.1741e+03, 4.3716e+01, + Elapsed time (stage 2): 1174 + + +Total elapsed time: 1227 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:48 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:48 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:54 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:57 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:57 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9781 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:01 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:01 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9834 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:04 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9881 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:05 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9886 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:05 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:09 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:11 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:11 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:12 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:13 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:15 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:15 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:16 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:17 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:19 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:19 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:19 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:29 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC009 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:40 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC009 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:40 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC009 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:41 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 10555 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:42 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:42 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 10593 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:44 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:44 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC009_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 69.583 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/logs/proc_func_19-03-2024-24527.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:50 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC009 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/QC/sub-PNC009_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC009* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 69.617 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC009_ses-01 +========================reprocessing without filter=================== +sub-PNC009_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC009 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC009 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC009 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC009 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:55 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:55 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz is 42.000008 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:31:01 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:33:05 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:33:19 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.43 (mm) at sub-brick 38 +++ Max delta displ in automask = 0.18 (mm) at sub-brick 35 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:46:01 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:46:19 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz is 42.000008 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:48:27 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:50:34 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz is 42.000008 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:52:44 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.130 -3.252 1.153 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.4 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.161 -4.660 1.907 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 74.0 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:57:30 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:57:57 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55c0c9bf46f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.102, 50.3603, -129.038] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55c0c9a6b730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55c0c9c0b320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55c0c9bf7fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [73.7943, 111.644, -136.2] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55c0c9bfde10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55c0ca408230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55c0ca4065c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [106.102, 50.3603, -129.038] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55c0c9bfa3f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55c0caf32450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55c0ca404da0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [73.7943, 111.644, -136.2] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55c0c9c01360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55c0cb72c780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.047901199764e-01, 1.797693134862e+308, 4.5761e-02, 4.5761e-02, + 2DIAGNOSTIC, 2, -6.065174121285e-01, 1.797693134862e+308, 4.6967e-02, 1.2059e-03, + 2DIAGNOSTIC, 3, -6.112416741084e-01, 1.797693134862e+308, 4.8288e-02, 1.3208e-03, + 2DIAGNOSTIC, 4, -6.229207734583e-01, 1.797693134862e+308, 4.9873e-02, 1.5850e-03, + 2DIAGNOSTIC, 5, -6.297788842601e-01, 1.797693134862e+308, 5.1742e-02, 1.8690e-03, + 2DIAGNOSTIC, 6, -6.415915031829e-01, 1.797693134862e+308, 5.3928e-02, 2.1861e-03, + 2DIAGNOSTIC, 7, -6.472694092433e-01, 1.797693134862e+308, 5.5296e-02, 1.3680e-03, + 2DIAGNOSTIC, 8, -6.530751155232e-01, 1.797693134862e+308, 5.6967e-02, 1.6708e-03, + 2DIAGNOSTIC, 9, -6.567503401429e-01, 1.797693134862e+308, 5.8522e-02, 1.5550e-03, + 2DIAGNOSTIC, 10, -6.570918614200e-01, 6.237614646195e-03, 6.0174e-02, 1.6520e-03, + 2DIAGNOSTIC, 11, -6.580024166524e-01, 5.171688153797e-03, 6.1697e-02, 1.5240e-03, + 2DIAGNOSTIC, 12, -6.583747317484e-01, 3.904714360875e-03, 6.3401e-02, 1.7040e-03, + 2DIAGNOSTIC, 13, -6.611270930948e-01, 2.735715337352e-03, 6.4708e-02, 1.3070e-03, + 2DIAGNOSTIC, 14, -6.858707801836e-01, 2.634820075810e-03, 6.5952e-02, 1.2431e-03, + 2DIAGNOSTIC, 15, -6.967547204964e-01, 2.801256605504e-03, 6.7240e-02, 1.2879e-03, + 2DIAGNOSTIC, 16, -7.433172495635e-01, 4.267360732941e-03, 7.0132e-02, 2.8920e-03, + 2DIAGNOSTIC, 17, -7.508199720399e-01, 5.456736995453e-03, 7.1684e-02, 1.5528e-03, + 2DIAGNOSTIC, 18, -7.370605364217e-01, 5.820883943848e-03, 7.3210e-02, 1.5252e-03, + 2DIAGNOSTIC, 19, -7.378689480409e-01, 5.724423357149e-03, 7.4539e-02, 1.3292e-03, + 2DIAGNOSTIC, 20, -7.386511057431e-01, 5.122689485072e-03, 7.5870e-02, 1.3309e-03, + 2DIAGNOSTIC, 21, -7.406004207840e-01, 4.152645212332e-03, 7.7394e-02, 1.5249e-03, + 2DIAGNOSTIC, 22, -7.438382017842e-01, 2.963824394219e-03, 7.8933e-02, 1.5380e-03, + 2DIAGNOSTIC, 23, -7.661482590044e-01, 2.070971424787e-03, 8.0487e-02, 1.5540e-03, + 2DIAGNOSTIC, 24, -7.770651680394e-01, 1.681989153380e-03, 8.4080e-02, 3.5939e-03, + 2DIAGNOSTIC, 25, -7.770674471579e-01, 1.326525197601e-03, 8.5407e-02, 1.3261e-03, + 2DIAGNOSTIC, 26, -7.771029325096e-01, 1.615568509815e-03, 8.6684e-02, 1.2770e-03, + 2DIAGNOSTIC, 27, -7.771628187535e-01, 1.850679445367e-03, 8.8107e-02, 1.4238e-03, + 2DIAGNOSTIC, 28, -7.772596271047e-01, 1.688596428902e-03, 9.0056e-02, 1.9491e-03, + 2DIAGNOSTIC, 29, -7.774154091507e-01, 1.390650236337e-03, 9.2027e-02, 1.9710e-03, + 2DIAGNOSTIC, 30, -7.776621791363e-01, 1.001715834705e-03, 9.3883e-02, 1.8559e-03, + 2DIAGNOSTIC, 31, -7.780319121672e-01, 5.807320380426e-04, 9.5801e-02, 1.9178e-03, + 2DIAGNOSTIC, 32, -7.785584872932e-01, 1.747068330637e-04, 9.7657e-02, 1.8559e-03, + 2DIAGNOSTIC, 33, -7.802019621308e-01, 6.596542315745e-05, 9.9693e-02, 2.0359e-03, + 2DIAGNOSTIC, 34, -7.811761167959e-01, 9.725787990828e-05, 1.0168e-01, 1.9908e-03, + 2DIAGNOSTIC, 35, -7.814060861436e-01, 1.200659756589e-04, 1.0378e-01, 2.0940e-03, + 2DIAGNOSTIC, 36, -7.814464820151e-01, 1.313069765040e-04, 1.0510e-01, 1.3230e-03, + 2DIAGNOSTIC, 37, -7.816555934592e-01, 1.324346547672e-04, 1.0637e-01, 1.2710e-03, + 2DIAGNOSTIC, 38, -7.819049639479e-01, 1.242833897774e-04, 1.0769e-01, 1.3199e-03, + 2DIAGNOSTIC, 39, -7.819650211924e-01, 1.068178575209e-04, 1.0897e-01, 1.2770e-03, + 2DIAGNOSTIC, 40, -7.822990464674e-01, 8.611916321366e-05, 1.1034e-01, 1.3721e-03, + 2DIAGNOSTIC, 41, -7.831683981497e-01, 7.038351966175e-05, 1.1192e-01, 1.5819e-03, + 2DIAGNOSTIC, 42, -7.868034715332e-01, 8.711801540147e-05, 1.1345e-01, 1.5299e-03, + 2DIAGNOSTIC, 43, -7.823230932849e-01, 6.792554552293e-05, 1.1569e-01, 2.2371e-03, + 2DIAGNOSTIC, 44, -7.816971835580e-01, 4.795411878263e-05, 1.1713e-01, 1.4420e-03, + 2DIAGNOSTIC, 45, -7.855096497785e-01, 5.960193180459e-05, 1.1912e-01, 1.9848e-03, + 2DIAGNOSTIC, 46, -7.874565291958e-01, 8.001554368282e-05, 1.2096e-01, 1.8401e-03, + 2DIAGNOSTIC, 47, -8.006178064057e-01, 2.017558279870e-04, 1.2304e-01, 2.0850e-03, + 2DIAGNOSTIC, 48, -8.051293541474e-01, 3.354358064694e-04, 1.2471e-01, 1.6649e-03, + 2DIAGNOSTIC, 49, -8.053798447043e-01, 4.346392522151e-04, 1.2664e-01, 1.9300e-03, + 2DIAGNOSTIC, 50, -8.097490493193e-01, 5.252911150730e-04, 1.2949e-01, 2.8491e-03, + 2DIAGNOSTIC, 51, -8.097778393083e-01, 5.662461825891e-04, 1.3122e-01, 1.7390e-03, + 2DIAGNOSTIC, 52, -8.106441698725e-01, 5.845296977010e-04, 1.3344e-01, 2.2130e-03, + 2DIAGNOSTIC, 53, -8.110562610996e-01, 5.167840951809e-04, 1.3543e-01, 1.9920e-03, + 2DIAGNOSTIC, 54, -8.107551519420e-01, 3.963857857679e-04, 1.3740e-01, 1.9741e-03, + 2DIAGNOSTIC, 55, -8.114108685029e-01, 2.747808204028e-04, 1.3921e-01, 1.8060e-03, + 2DIAGNOSTIC, 56, -8.112165574304e-01, 1.411441608158e-04, 1.4068e-01, 1.4720e-03, + 2DIAGNOSTIC, 57, -8.119568000792e-01, 9.166131416726e-05, 1.4211e-01, 1.4260e-03, + 2DIAGNOSTIC, 58, -8.127261506828e-01, 7.010075101883e-05, 1.4356e-01, 1.4482e-03, + 2DIAGNOSTIC, 59, -8.143741366661e-01, 5.407386490097e-05, 1.4510e-01, 1.5430e-03, + 2DIAGNOSTIC, 60, -8.251116769860e-01, 1.288668652066e-04, 1.4727e-01, 2.1751e-03, + 2DIAGNOSTIC, 61, -8.327756257819e-01, 2.344859353597e-04, 1.4918e-01, 1.9112e-03, + 2DIAGNOSTIC, 62, -8.332997411317e-01, 3.218305477193e-04, 1.5070e-01, 1.5180e-03, + 2DIAGNOSTIC, 63, -8.338385014260e-01, 3.823847592411e-04, 1.5219e-01, 1.4839e-03, + 2DIAGNOSTIC, 64, -8.344686181989e-01, 4.062845662961e-04, 1.5363e-01, 1.4460e-03, + 2DIAGNOSTIC, 65, -8.350984217344e-01, 3.966802464117e-04, 1.5581e-01, 2.1799e-03, + 2DIAGNOSTIC, 66, -8.357175794326e-01, 3.508079164297e-04, 1.5726e-01, 1.4429e-03, + 2DIAGNOSTIC, 67, -8.363792066364e-01, 2.813324677474e-04, 1.5868e-01, 1.4250e-03, + 2DIAGNOSTIC, 68, -8.377381056384e-01, 1.998544592079e-04, 1.6082e-01, 2.1360e-03, + 2DIAGNOSTIC, 69, -8.387235670657e-01, 1.147370433565e-04, 1.6226e-01, 1.4470e-03, + 2DIAGNOSTIC, 70, -8.390146610025e-01, 7.891528708233e-05, 1.6372e-01, 1.4541e-03, + 2DIAGNOSTIC, 71, -8.397669053578e-01, 8.088618921039e-05, 1.6518e-01, 1.4670e-03, + 2DIAGNOSTIC, 72, -8.406046443076e-01, 8.199646399768e-05, 1.6690e-01, 1.7159e-03, + 2DIAGNOSTIC, 73, -8.412281570349e-01, 8.093381150425e-05, 1.6857e-01, 1.6680e-03, + 2DIAGNOSTIC, 74, -8.403160101328e-01, 7.064600818633e-05, 1.7069e-01, 2.1200e-03, + 2DIAGNOSTIC, 75, -8.403276599219e-01, 5.730282372696e-05, 1.7206e-01, 1.3740e-03, + 2DIAGNOSTIC, 76, -8.403448906318e-01, 4.194133313265e-05, 1.7373e-01, 1.6630e-03, + 2DIAGNOSTIC, 77, -8.403729534214e-01, 2.605418826132e-05, 1.7522e-01, 1.4961e-03, + 2DIAGNOSTIC, 78, -8.395243493016e-01, 1.044916440598e-05, 1.7713e-01, 1.9059e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.323587427470e-01, 1.797693134862e+308, 2.2511e-01, 4.7984e-02, + 2DIAGNOSTIC, 2, -4.322444378079e-01, 1.797693134862e+308, 2.2779e-01, 2.6829e-03, + 2DIAGNOSTIC, 3, -4.350569083151e-01, 1.797693134862e+308, 2.3042e-01, 2.6221e-03, + 2DIAGNOSTIC, 4, -4.380366606929e-01, 1.797693134862e+308, 2.3297e-01, 2.5530e-03, + 2DIAGNOSTIC, 5, -4.397955515525e-01, 1.797693134862e+308, 2.3539e-01, 2.4202e-03, + 2DIAGNOSTIC, 6, -4.488632836876e-01, 1.797693134862e+308, 2.3748e-01, 2.0928e-03, + 2DIAGNOSTIC, 7, -4.573571629063e-01, 1.797693134862e+308, 2.3958e-01, 2.0978e-03, + 2DIAGNOSTIC, 8, -4.913850724908e-01, 1.797693134862e+308, 2.4226e-01, 2.6841e-03, + 2DIAGNOSTIC, 9, -4.949708780310e-01, 1.797693134862e+308, 2.4432e-01, 2.0590e-03, + 2DIAGNOSTIC, 10, -5.066550428400e-01, 1.112908542212e-02, 2.4744e-01, 3.1199e-03, + 2DIAGNOSTIC, 11, -5.092524671630e-01, 1.145942705125e-02, 2.5121e-01, 3.7699e-03, + 2DIAGNOSTIC, 12, -5.110039799130e-01, 1.078081965251e-02, 2.5590e-01, 4.6871e-03, + 2DIAGNOSTIC, 13, -5.134557934585e-01, 9.473919517627e-03, 2.5905e-01, 3.1500e-03, + 2DIAGNOSTIC, 14, -5.207309932180e-01, 7.944488517676e-03, 2.6159e-01, 2.5411e-03, + 2DIAGNOSTIC, 15, -5.350112157832e-01, 6.542855731983e-03, 2.6406e-01, 2.4710e-03, + 2DIAGNOSTIC, 16, -5.454790758660e-01, 5.448651404832e-03, 2.6672e-01, 2.6531e-03, + 2DIAGNOSTIC, 17, -5.564818466560e-01, 4.638824697588e-03, 2.6976e-01, 3.0491e-03, + 2DIAGNOSTIC, 18, -5.598752218540e-01, 4.711171085006e-03, 2.7266e-01, 2.8951e-03, + 2DIAGNOSTIC, 19, -5.633780277492e-01, 4.546914906874e-03, 2.7519e-01, 2.5291e-03, + 2DIAGNOSTIC, 20, -5.834634004913e-01, 4.873268829068e-03, 2.7811e-01, 2.9221e-03, + 2DIAGNOSTIC, 21, -5.947683596084e-01, 5.064661661653e-03, 2.8031e-01, 2.1970e-03, + 2DIAGNOSTIC, 22, -5.989000437974e-01, 4.914462461081e-03, 2.8302e-01, 2.7082e-03, + 2DIAGNOSTIC, 23, -6.121571682183e-01, 4.706439571887e-03, 2.8531e-01, 2.2969e-03, + 2DIAGNOSTIC, 24, -6.152226710958e-01, 4.308483502033e-03, 2.8757e-01, 2.2550e-03, + 2DIAGNOSTIC, 25, -6.179412186068e-01, 3.909270681157e-03, 2.8983e-01, 2.2569e-03, + 2DIAGNOSTIC, 26, -6.220338398899e-01, 3.477108974639e-03, 2.9178e-01, 1.9572e-03, + 2DIAGNOSTIC, 27, -6.227467166156e-01, 2.992414073344e-03, 2.9401e-01, 2.2230e-03, + 2DIAGNOSTIC, 28, -6.254194238490e-01, 2.386221964889e-03, 2.9698e-01, 2.9759e-03, + 2DIAGNOSTIC, 29, -6.262814442336e-01, 1.676046222568e-03, 2.9930e-01, 2.3150e-03, + 2DIAGNOSTIC, 30, -6.264893868187e-01, 1.218972947271e-03, 3.0139e-01, 2.0931e-03, + 2DIAGNOSTIC, 31, -6.268995325748e-01, 8.809754095597e-04, 3.0346e-01, 2.0730e-03, + 2DIAGNOSTIC, 32, -6.277747111355e-01, 5.607701113195e-04, 3.0641e-01, 2.9521e-03, + 2DIAGNOSTIC, 33, -6.280980142506e-01, 4.233496903729e-04, 3.0863e-01, 2.2130e-03, + 2DIAGNOSTIC, 34, -6.286645450220e-01, 3.100982141945e-04, 3.1147e-01, 2.8460e-03, + 2DIAGNOSTIC, 35, -6.288087087571e-01, 2.161421100769e-04, 3.1405e-01, 2.5802e-03, + 2DIAGNOSTIC, 36, -6.289828712700e-01, 1.689902272009e-04, 3.1658e-01, 2.5239e-03, + 2DIAGNOSTIC, 37, -6.293291085757e-01, 1.224250665372e-04, 3.1913e-01, 2.5480e-03, + 2DIAGNOSTIC, 38, -6.301821182600e-01, 1.140148820551e-04, 3.2287e-01, 3.7470e-03, + 2DIAGNOSTIC, 39, -6.303542633804e-01, 1.086338982493e-04, 3.2517e-01, 2.2969e-03, + 2DIAGNOSTIC, 40, -6.307559397593e-01, 1.011638610296e-04, 3.2746e-01, 2.2919e-03, + 2DIAGNOSTIC, 41, -6.315011735089e-01, 9.864970741871e-05, 3.2974e-01, 2.2771e-03, + 2DIAGNOSTIC, 42, -6.320124318199e-01, 1.033096336257e-04, 3.3229e-01, 2.5511e-03, + 2DIAGNOSTIC, 43, -6.321883488586e-01, 1.034814493847e-04, 3.3459e-01, 2.2969e-03, + 2DIAGNOSTIC, 44, -6.323127986341e-01, 1.018322752036e-04, 3.3684e-01, 2.2509e-03, + 2DIAGNOSTIC, 45, -6.325859537164e-01, 9.536952102922e-05, 3.3966e-01, 2.8179e-03, + 2DIAGNOSTIC, 46, -6.335227122719e-01, 9.205170552410e-05, 3.4254e-01, 2.8811e-03, + 2DIAGNOSTIC, 47, -6.342690745139e-01, 9.120992120561e-05, 3.4544e-01, 2.9070e-03, + 2DIAGNOSTIC, 48, -6.400469605309e-01, 1.502964023451e-04, 3.4873e-01, 3.2871e-03, + 2DIAGNOSTIC, 49, -6.430259742897e-01, 2.228013435126e-04, 3.5105e-01, 2.3220e-03, + 2DIAGNOSTIC, 50, -6.494301643635e-01, 3.377176198189e-04, 3.5366e-01, 2.6081e-03, + 2DIAGNOSTIC, 51, -6.518611209719e-01, 4.451506385169e-04, 3.5623e-01, 2.5659e-03, + 2DIAGNOSTIC, 52, -6.530455587736e-01, 5.215728122245e-04, 3.5912e-01, 2.8930e-03, + 2DIAGNOSTIC, 53, -6.535436746533e-01, 5.511325373543e-04, 3.6191e-01, 2.7900e-03, + 2DIAGNOSTIC, 54, -6.537458156467e-01, 5.293224181392e-04, 3.6411e-01, 2.2051e-03, + 2DIAGNOSTIC, 55, -6.549335939167e-01, 4.703935657129e-04, 3.6631e-01, 2.1930e-03, + 2DIAGNOSTIC, 56, -6.553337454093e-01, 3.804417275692e-04, 3.6853e-01, 2.2180e-03, + 2DIAGNOSTIC, 57, -6.555137594783e-01, 2.650645126021e-04, 3.7110e-01, 2.5759e-03, + 2DIAGNOSTIC, 58, -6.557402510381e-01, 1.792324772030e-04, 3.7343e-01, 2.3239e-03, + 2DIAGNOSTIC, 59, -6.571091223347e-01, 1.139666135020e-04, 3.7687e-01, 3.4451e-03, + 2DIAGNOSTIC, 60, -6.594060419192e-01, 1.093932246947e-04, 3.7930e-01, 2.4290e-03, + 2DIAGNOSTIC, 61, -6.596346263115e-01, 1.148891773849e-04, 3.8215e-01, 2.8520e-03, + 2DIAGNOSTIC, 62, -6.606891967651e-01, 1.269163788289e-04, 3.8465e-01, 2.5010e-03, + 2DIAGNOSTIC, 63, -6.621144332750e-01, 1.411375615602e-04, 3.8724e-01, 2.5871e-03, + 2DIAGNOSTIC, 64, -6.625425299961e-01, 1.454436636059e-04, 3.8984e-01, 2.6031e-03, + 2DIAGNOSTIC, 65, -6.629088318574e-01, 1.468926824961e-04, 3.9243e-01, 2.5861e-03, + 2DIAGNOSTIC, 66, -6.631863897761e-01, 1.392724421661e-04, 3.9483e-01, 2.3999e-03, + 2DIAGNOSTIC, 67, -6.635022594394e-01, 1.222758487928e-04, 3.9759e-01, 2.7659e-03, + 2DIAGNOSTIC, 68, -6.635617736275e-01, 9.586015351899e-05, 4.0031e-01, 2.7161e-03, + 2DIAGNOSTIC, 69, -6.636206490197e-01, 7.057608026520e-05, 4.0322e-01, 2.9089e-03, + 2DIAGNOSTIC, 70, -6.643929270573e-01, 6.030022864476e-05, 4.0776e-01, 4.5440e-03, + 2DIAGNOSTIC, 71, -6.644934444482e-01, 4.655594685652e-05, 4.1137e-01, 3.6070e-03, + 2DIAGNOSTIC, 72, -6.647023279111e-01, 3.690140568201e-05, 4.1460e-01, 3.2301e-03, + 2DIAGNOSTIC, 73, -6.649775904611e-01, 3.503868866607e-05, 4.1702e-01, 2.4168e-03, + 2DIAGNOSTIC, 74, -6.652188896362e-01, 3.410207259962e-05, 4.1976e-01, 2.7449e-03, + 2DIAGNOSTIC, 75, -6.653943186412e-01, 3.324484080219e-05, 4.2219e-01, 2.4290e-03, + 2DIAGNOSTIC, 76, -6.654256907016e-01, 3.109902958829e-05, 4.2494e-01, 2.7440e-03, + 2DIAGNOSTIC, 77, -6.655425961640e-01, 2.877059660784e-05, 4.2727e-01, 2.3329e-03, + 2DIAGNOSTIC, 78, -6.658006933375e-01, 2.570266975746e-05, 4.3023e-01, 2.9650e-03, + 2DIAGNOSTIC, 79, -6.661047749079e-01, 2.226453023331e-05, 4.3255e-01, 2.3170e-03, + 2DIAGNOSTIC, 80, -6.661650579143e-01, 2.166150843601e-05, 4.3526e-01, 2.7111e-03, + 2DIAGNOSTIC, 81, -6.665476487069e-01, 2.184570302839e-05, 4.3791e-01, 2.6510e-03, + 2DIAGNOSTIC, 82, -6.666082042249e-01, 2.143174307938e-05, 4.4058e-01, 2.6700e-03, + 2DIAGNOSTIC, 83, -6.665720561676e-01, 2.030774446727e-05, 4.4358e-01, 2.9969e-03, + 2DIAGNOSTIC, 84, -6.666577477741e-01, 1.909896068066e-05, 4.4629e-01, 2.7080e-03, + 2DIAGNOSTIC, 85, -6.666273525897e-01, 1.690611841633e-05, 4.4866e-01, 2.3730e-03, + 2DIAGNOSTIC, 86, -6.665403406595e-01, 1.287031089606e-05, 4.5111e-01, 2.4450e-03, + 2DIAGNOSTIC, 87, -6.668722137800e-01, 1.011652529462e-05, 4.5399e-01, 2.8870e-03, + 2DIAGNOSTIC, 88, -6.672031949830e-01, 9.527985972120e-06, 4.5756e-01, 3.5639e-03, + 2DIAGNOSTIC, 89, -6.673221317529e-01, 1.025046847904e-05, 4.6061e-01, 3.0499e-03, + 2DIAGNOSTIC, 90, -6.674060469612e-01, 1.072154551451e-05, 4.6334e-01, 2.7349e-03, + 2DIAGNOSTIC, 91, -6.674000874084e-01, 1.211556625633e-05, 4.6572e-01, 2.3839e-03, + 2DIAGNOSTIC, 92, -6.674896833210e-01, 1.308677869208e-05, 4.6851e-01, 2.7878e-03, + 2DIAGNOSTIC, 93, -6.675329881459e-01, 1.277848409992e-05, 4.7091e-01, 2.3968e-03, + 2DIAGNOSTIC, 94, -6.675074769793e-01, 1.157964855671e-05, 4.7337e-01, 2.4612e-03, + 2DIAGNOSTIC, 95, -6.675736935483e-01, 9.559309133782e-06, 4.7596e-01, 2.5909e-03, + 2DIAGNOSTIC, 96, -6.676320453107e-01, 6.530566276121e-06, 4.7871e-01, 2.7461e-03, + 2DIAGNOSTIC, 97, -6.676782615403e-01, 4.718763923694e-06, 4.8145e-01, 2.7399e-03, + 2DIAGNOSTIC, 98, -6.681341727666e-01, 6.199271907386e-06, 4.8481e-01, 3.3622e-03, + 2DIAGNOSTIC, 99, -6.681688266906e-01, 7.735687752117e-06, 4.8770e-01, 2.8949e-03, + 2DIAGNOSTIC, 100, -6.685444611281e-01, 1.065908532254e-05, 4.9108e-01, 3.3720e-03, + 2DIAGNOSTIC, 101, -6.689297119695e-01, 1.421205406446e-05, 4.9523e-01, 4.1511e-03, + 2DIAGNOSTIC, 102, -6.689463119436e-01, 1.678319576446e-05, 4.9769e-01, 2.4641e-03, + 2DIAGNOSTIC, 103, -6.689300299106e-01, 1.784989379283e-05, 5.0014e-01, 2.4519e-03, + 2DIAGNOSTIC, 104, -6.690026532320e-01, 1.741816008057e-05, 5.0299e-01, 2.8501e-03, + 2DIAGNOSTIC, 105, -6.691155128309e-01, 1.610442807012e-05, 5.0554e-01, 2.5430e-03, + 2DIAGNOSTIC, 106, -6.692441289512e-01, 1.406974271173e-05, 5.0835e-01, 2.8110e-03, + 2DIAGNOSTIC, 107, -6.693334780004e-01, 1.128301522930e-05, 5.1119e-01, 2.8422e-03, + 2DIAGNOSTIC, 108, -6.694002256151e-01, 9.741318570658e-06, 5.1460e-01, 3.4149e-03, + 2DIAGNOSTIC, 109, -6.695616444161e-01, 8.110919504119e-06, 5.1809e-01, 3.4890e-03, + 2DIAGNOSTIC, 110, -6.695961287691e-01, 7.387982311638e-06, 5.2119e-01, 3.0949e-03, + 2DIAGNOSTIC, 111, -6.696516741723e-01, 7.798954017459e-06, 5.2395e-01, 2.7621e-03, + 2DIAGNOSTIC, 112, -6.697102858116e-01, 7.791386286133e-06, 5.2654e-01, 2.5940e-03, + 2DIAGNOSTIC, 113, -6.697657313553e-01, 7.211470971437e-06, 5.2976e-01, 3.2108e-03, + 2DIAGNOSTIC, 114, -6.698359449104e-01, 6.528785561779e-06, 5.3256e-01, 2.8009e-03, + 2DIAGNOSTIC, 115, -6.699599491192e-01, 6.176920002448e-06, 5.3538e-01, 2.8229e-03, + 2DIAGNOSTIC, 116, -6.704162790945e-01, 7.540391782256e-06, 5.3917e-01, 3.7868e-03, + 2DIAGNOSTIC, 117, -6.704681137425e-01, 8.680117055819e-06, 5.4200e-01, 2.8379e-03, + 2DIAGNOSTIC, 118, -6.704101576378e-01, 9.024807139421e-06, 5.4446e-01, 2.4569e-03, + 2DIAGNOSTIC, 119, -6.704336646732e-01, 9.252434525400e-06, 5.4694e-01, 2.4831e-03, + 2DIAGNOSTIC, 120, -6.704897394901e-01, 8.930964484250e-06, 5.4975e-01, 2.8050e-03, + 2DIAGNOSTIC, 121, -6.707368371242e-01, 8.868801386543e-06, 5.5345e-01, 3.6988e-03, + 2DIAGNOSTIC, 122, -6.708327850279e-01, 8.521403977562e-06, 5.5702e-01, 3.5701e-03, + 2DIAGNOSTIC, 123, -6.708517907309e-01, 7.686389434441e-06, 5.6012e-01, 3.1061e-03, + 2DIAGNOSTIC, 124, -6.709079198655e-01, 6.632841601227e-06, 5.6306e-01, 2.9390e-03, + 2DIAGNOSTIC, 125, -6.708743827815e-01, 5.252343835860e-06, 5.6593e-01, 2.8622e-03, + 2DIAGNOSTIC, 126, -6.708385257677e-01, 4.901021928369e-06, 5.6851e-01, 2.5890e-03, + 2DIAGNOSTIC, 127, -6.708784885346e-01, 4.438495808947e-06, 5.7103e-01, 2.5170e-03, + 2DIAGNOSTIC, 128, -6.709015229925e-01, 3.459601113571e-06, 5.7524e-01, 4.2062e-03, + 2DIAGNOSTIC, 129, -6.709034679624e-01, 2.280228406168e-06, 5.7773e-01, 2.4910e-03, + 2DIAGNOSTIC, 130, -6.709050918815e-01, 1.109436900352e-06, 5.8022e-01, 2.4951e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.070643206258e-01, 1.797693134862e+308, 6.5276e-01, 7.2532e-02, + 2DIAGNOSTIC, 2, -5.073742987011e-01, 1.797693134862e+308, 6.6607e-01, 1.3314e-02, + 2DIAGNOSTIC, 3, -5.076214136612e-01, 1.797693134862e+308, 6.7919e-01, 1.3117e-02, + 2DIAGNOSTIC, 4, -5.077521558515e-01, 1.797693134862e+308, 6.9223e-01, 1.3039e-02, + 2DIAGNOSTIC, 5, -5.078657561762e-01, 1.797693134862e+308, 7.0527e-01, 1.3044e-02, + 2DIAGNOSTIC, 6, -5.079457481813e-01, 1.797693134862e+308, 7.1740e-01, 1.2133e-02, + 2DIAGNOSTIC, 7, -5.082715979431e-01, 1.797693134862e+308, 7.3121e-01, 1.3809e-02, + 2DIAGNOSTIC, 8, -5.087471528321e-01, 1.797693134862e+308, 7.4879e-01, 1.7581e-02, + 2DIAGNOSTIC, 9, -5.087458918831e-01, 1.797693134862e+308, 7.6267e-01, 1.3880e-02, + 2DIAGNOSTIC, 10, -5.088551212099e-01, 2.289255977821e-04, 7.7507e-01, 1.2400e-02, + 2DIAGNOSTIC, 11, -5.091251390001e-01, 2.058592800442e-04, 7.8980e-01, 1.4728e-02, + 2DIAGNOSTIC, 12, -5.093902221225e-01, 1.944160357385e-04, 8.0426e-01, 1.4459e-02, + 2DIAGNOSTIC, 13, -5.094829882941e-01, 1.814878032745e-04, 8.1809e-01, 1.3827e-02, + 2DIAGNOSTIC, 14, -5.095284929564e-01, 1.614187752560e-04, 8.3352e-01, 1.5430e-02, + 2DIAGNOSTIC, 15, -5.095540805797e-01, 1.350881534253e-04, 8.4758e-01, 1.4067e-02, + 2DIAGNOSTIC, 16, -5.095591543676e-01, 1.025463758081e-04, 8.6001e-01, 1.2424e-02, + 2DIAGNOSTIC, 17, -5.095688406525e-01, 7.506076820686e-05, 8.7256e-01, 1.2550e-02, + 2DIAGNOSTIC, 18, -5.095750894786e-01, 5.892989423530e-05, 8.8644e-01, 1.3883e-02, + 2DIAGNOSTIC, 19, -5.095882933848e-01, 3.965037636723e-05, 9.0075e-01, 1.4310e-02, + 2DIAGNOSTIC, 20, -5.095983298009e-01, 2.199869066114e-05, 9.1358e-01, 1.2831e-02, + 2DIAGNOSTIC, 21, -5.096365715095e-01, 1.217019316690e-05, 9.2938e-01, 1.5795e-02, + 2DIAGNOSTIC, 22, -5.096386503912e-01, 8.957343203962e-06, 9.4505e-01, 1.5678e-02, + 2DIAGNOSTIC, 23, -5.096361332634e-01, 7.500145183907e-06, 9.5937e-01, 1.4314e-02, + 2DIAGNOSTIC, 24, -5.096303294705e-01, 6.513380179547e-06, 9.7367e-01, 1.4299e-02, + 2DIAGNOSTIC, 25, -5.096181523457e-01, 5.415595046729e-06, 9.8661e-01, 1.2943e-02, + 2DIAGNOSTIC, 26, -5.096104718087e-01, 3.947433545218e-06, 9.9908e-01, 1.2467e-02, + 2DIAGNOSTIC, 27, -5.096119580419e-01, 2.561820692609e-06, 1.0118e+00, 1.2733e-02, + 2DIAGNOSTIC, 28, -5.096141881193e-01, 1.315787345239e-06, 1.0242e+00, 1.2356e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.252633022737e-01, 1.797693134862e+308, 1.2396e+00, 2.1542e-01, + Elapsed time (stage 0): 1.2727e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.353774157000e-01, 1.797693134862e+308, 4.4693e-02, 4.4693e-02, + 2DIAGNOSTIC, 2, -9.385070877350e-01, 1.797693134862e+308, 4.5931e-02, 1.2379e-03, + 2DIAGNOSTIC, 3, -9.451879690486e-01, 1.797693134862e+308, 4.7190e-02, 1.2589e-03, + 2DIAGNOSTIC, 4, -9.583533365010e-01, 1.797693134862e+308, 4.8529e-02, 1.3390e-03, + 2DIAGNOSTIC, 5, -9.783582576849e-01, 1.797693134862e+308, 4.9872e-02, 1.3430e-03, + 2DIAGNOSTIC, 6, -9.945143602633e-01, 1.797693134862e+308, 5.1221e-02, 1.3490e-03, + 2DIAGNOSTIC, 7, -1.003973964287e+00, 1.797693134862e+308, 5.2570e-02, 1.3490e-03, + 2DIAGNOSTIC, 8, -1.034641623609e+00, 1.797693134862e+308, 5.4097e-02, 1.5271e-03, + 2DIAGNOSTIC, 9, -1.065781531656e+00, 1.797693134862e+308, 5.6180e-02, 2.0831e-03, + 2DIAGNOSTIC, 10, -1.084844687284e+00, 9.937501961329e-03, 5.7694e-02, 1.5140e-03, + 2DIAGNOSTIC, 11, -1.094928966271e+00, 9.834006495993e-03, 5.9441e-02, 1.7471e-03, + 2DIAGNOSTIC, 12, -1.107515095967e+00, 9.242553195757e-03, 6.1315e-02, 1.8740e-03, + 2DIAGNOSTIC, 13, -1.110809659325e+00, 8.123602250832e-03, 6.2764e-02, 1.4491e-03, + 2DIAGNOSTIC, 14, -1.124755755288e+00, 6.960326405694e-03, 6.4215e-02, 1.4510e-03, + 2DIAGNOSTIC, 15, -1.131607716212e+00, 5.815654869559e-03, 6.6768e-02, 2.5530e-03, + 2DIAGNOSTIC, 16, -1.133877085792e+00, 4.616615329177e-03, 6.8704e-02, 1.9360e-03, + 2DIAGNOSTIC, 17, -1.134820208953e+00, 3.310727925466e-03, 7.0234e-02, 1.5299e-03, + 2DIAGNOSTIC, 18, -1.136986134036e+00, 2.342323464972e-03, 7.1681e-02, 1.4470e-03, + 2DIAGNOSTIC, 19, -1.139190005720e+00, 1.733025560475e-03, 7.3200e-02, 1.5190e-03, + 2DIAGNOSTIC, 20, -1.141138059490e+00, 1.306861784150e-03, 7.4703e-02, 1.5030e-03, + 2DIAGNOSTIC, 21, -1.143163100467e+00, 9.551188325820e-04, 7.6149e-02, 1.4460e-03, + 2DIAGNOSTIC, 22, -1.148581938148e+00, 7.685107481698e-04, 7.7838e-02, 1.6890e-03, + 2DIAGNOSTIC, 23, -1.152951450892e+00, 6.111550092370e-04, 7.9477e-02, 1.6391e-03, + 2DIAGNOSTIC, 24, -1.153211433744e+00, 5.648595662743e-04, 8.1869e-02, 2.3921e-03, + 2DIAGNOSTIC, 25, -1.152877441833e+00, 5.392259567691e-04, 8.3321e-02, 1.4520e-03, + 2DIAGNOSTIC, 26, -1.156435837353e+00, 5.246976267440e-04, 8.4778e-02, 1.4570e-03, + 2DIAGNOSTIC, 27, -1.159290832624e+00, 4.968450365259e-04, 8.6233e-02, 1.4551e-03, + 2DIAGNOSTIC, 28, -1.160766992677e+00, 4.571266173131e-04, 8.7915e-02, 1.6820e-03, + 2DIAGNOSTIC, 29, -1.160782168750e+00, 3.981275765483e-04, 8.9893e-02, 1.9779e-03, + 2DIAGNOSTIC, 30, -1.160470488911e+00, 3.212260178811e-04, 9.2061e-02, 2.1682e-03, + 2DIAGNOSTIC, 31, -1.161653497109e+00, 2.451029702047e-04, 9.3509e-02, 1.4479e-03, + 2DIAGNOSTIC, 32, -1.162678442783e+00, 2.012841853060e-04, 9.4966e-02, 1.4570e-03, + 2DIAGNOSTIC, 33, -1.163161562135e+00, 1.793117194866e-04, 9.6415e-02, 1.4489e-03, + 2DIAGNOSTIC, 34, -1.163542505192e+00, 1.475316857920e-04, 9.7881e-02, 1.4660e-03, + 2DIAGNOSTIC, 35, -1.164029106767e+00, 1.046616839779e-04, 9.9535e-02, 1.6541e-03, + 2DIAGNOSTIC, 36, -1.165026214805e+00, 8.642016052815e-05, 1.0165e-01, 2.1188e-03, + 2DIAGNOSTIC, 37, -1.164534282042e+00, 7.691428544811e-05, 1.0310e-01, 1.4460e-03, + 2DIAGNOSTIC, 38, -1.164613591651e+00, 7.145942570629e-05, 1.0456e-01, 1.4629e-03, + 2DIAGNOSTIC, 39, -1.164848015673e+00, 6.147126299489e-05, 1.0648e-01, 1.9140e-03, + 2DIAGNOSTIC, 40, -1.165119951729e+00, 4.571756319418e-05, 1.0794e-01, 1.4610e-03, + 2DIAGNOSTIC, 41, -1.165358434044e+00, 3.512556624172e-05, 1.0966e-01, 1.7262e-03, + 2DIAGNOSTIC, 42, -1.165547220287e+00, 2.919330241565e-05, 1.1142e-01, 1.7610e-03, + 2DIAGNOSTIC, 43, -1.165798609366e+00, 2.527500743786e-05, 1.1291e-01, 1.4839e-03, + 2DIAGNOSTIC, 44, -1.165987540258e+00, 2.241138239916e-05, 1.1436e-01, 1.4560e-03, + 2DIAGNOSTIC, 45, -1.166057594156e+00, 2.054230569364e-05, 1.1649e-01, 2.1300e-03, + 2DIAGNOSTIC, 46, -1.166943641945e+00, 2.737828381194e-05, 1.1794e-01, 1.4429e-03, + 2DIAGNOSTIC, 47, -1.165827575739e+00, 2.254844090490e-05, 1.2009e-01, 2.1551e-03, + 2DIAGNOSTIC, 48, -1.165852946309e+00, 1.659581867620e-05, 1.2155e-01, 1.4529e-03, + 2DIAGNOSTIC, 49, -1.166008766006e+00, 1.136356664692e-05, 1.2303e-01, 1.4832e-03, + 2DIAGNOSTIC, 50, -1.165002697400e+00, 1.460397208976e-06, 1.2453e-01, 1.4999e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.522553157887e-01, 1.797693134862e+308, 1.7049e-01, 4.5957e-02, + 2DIAGNOSTIC, 2, -7.516555241220e-01, 1.797693134862e+308, 1.7337e-01, 2.8820e-03, + 2DIAGNOSTIC, 3, -7.527052050339e-01, 1.797693134862e+308, 1.7617e-01, 2.8050e-03, + 2DIAGNOSTIC, 4, -7.545066340176e-01, 1.797693134862e+308, 1.7882e-01, 2.6500e-03, + 2DIAGNOSTIC, 5, -7.573658381639e-01, 1.797693134862e+308, 1.8116e-01, 2.3379e-03, + 2DIAGNOSTIC, 6, -7.618627306588e-01, 1.797693134862e+308, 1.8375e-01, 2.5930e-03, + 2DIAGNOSTIC, 7, -7.682367377636e-01, 1.797693134862e+308, 1.8852e-01, 4.7660e-03, + 2DIAGNOSTIC, 8, -7.683229046183e-01, 1.797693134862e+308, 1.9074e-01, 2.2159e-03, + 2DIAGNOSTIC, 9, -7.685185481747e-01, 1.797693134862e+308, 1.9323e-01, 2.4970e-03, + 2DIAGNOSTIC, 10, -7.687891265680e-01, 1.848907160890e-03, 1.9589e-01, 2.6579e-03, + 2DIAGNOSTIC, 11, -7.692286928193e-01, 1.619572565500e-03, 1.9865e-01, 2.7609e-03, + 2DIAGNOSTIC, 12, -7.699127144318e-01, 1.283643117126e-03, 2.0135e-01, 2.6979e-03, + 2DIAGNOSTIC, 13, -7.709988356739e-01, 9.460319459227e-04, 2.0390e-01, 2.5520e-03, + 2DIAGNOSTIC, 14, -7.727102532092e-01, 6.663190464837e-04, 2.0641e-01, 2.5120e-03, + 2DIAGNOSTIC, 15, -7.746365705049e-01, 4.803136004828e-04, 2.0891e-01, 2.5001e-03, + 2DIAGNOSTIC, 16, -7.761200657476e-01, 4.081084997756e-04, 2.1142e-01, 2.5029e-03, + 2DIAGNOSTIC, 17, -7.775264671031e-01, 4.769310234349e-04, 2.1442e-01, 3.0081e-03, + 2DIAGNOSTIC, 18, -7.781650387642e-01, 5.087799494810e-04, 2.1680e-01, 2.3720e-03, + 2DIAGNOSTIC, 19, -7.787007440351e-01, 5.043611201463e-04, 2.1945e-01, 2.6510e-03, + 2DIAGNOSTIC, 20, -7.793569551926e-01, 4.705611458609e-04, 2.2211e-01, 2.6591e-03, + 2DIAGNOSTIC, 21, -7.801151948001e-01, 4.171386842065e-04, 2.2513e-01, 3.0241e-03, + 2DIAGNOSTIC, 22, -7.817401164293e-01, 3.683678233613e-04, 2.2782e-01, 2.6891e-03, + 2DIAGNOSTIC, 23, -7.822647576464e-01, 3.147199196918e-04, 2.3024e-01, 2.4211e-03, + 2DIAGNOSTIC, 24, -7.828700744818e-01, 2.717139351077e-04, 2.3395e-01, 3.7122e-03, + 2DIAGNOSTIC, 25, -7.829792071020e-01, 2.366347227526e-04, 2.3643e-01, 2.4772e-03, + 2DIAGNOSTIC, 26, -7.832761946055e-01, 2.069557241681e-04, 2.3922e-01, 2.7921e-03, + 2DIAGNOSTIC, 27, -7.834354466539e-01, 1.810876707051e-04, 2.4167e-01, 2.4459e-03, + 2DIAGNOSTIC, 28, -7.834910741650e-01, 1.491141387061e-04, 2.4421e-01, 2.5458e-03, + 2DIAGNOSTIC, 29, -7.835422186596e-01, 1.129778019259e-04, 2.4685e-01, 2.6350e-03, + 2DIAGNOSTIC, 30, -7.835973759864e-01, 7.747114198228e-05, 2.4945e-01, 2.6040e-03, + 2DIAGNOSTIC, 31, -7.837791575191e-01, 4.777452933484e-05, 2.5236e-01, 2.9099e-03, + 2DIAGNOSTIC, 32, -7.839382779555e-01, 3.586462834975e-05, 2.5511e-01, 2.7449e-03, + 2DIAGNOSTIC, 33, -7.839506804743e-01, 2.719949780114e-05, 2.5850e-01, 3.3879e-03, + 2DIAGNOSTIC, 34, -7.840660813159e-01, 2.441403046440e-05, 2.6099e-01, 2.4929e-03, + 2DIAGNOSTIC, 35, -7.840471488395e-01, 2.042235922509e-05, 2.6344e-01, 2.4531e-03, + 2DIAGNOSTIC, 36, -7.841575323802e-01, 1.890451486521e-05, 2.6589e-01, 2.4459e-03, + 2DIAGNOSTIC, 37, -7.845421178699e-01, 2.109798144086e-05, 2.6908e-01, 3.1879e-03, + 2DIAGNOSTIC, 38, -7.847024369027e-01, 2.324501122105e-05, 2.7186e-01, 2.7800e-03, + 2DIAGNOSTIC, 39, -7.847845519159e-01, 2.442851537343e-05, 2.7433e-01, 2.4738e-03, + 2DIAGNOSTIC, 40, -7.848077903621e-01, 2.404042455385e-05, 2.7682e-01, 2.4910e-03, + 2DIAGNOSTIC, 41, -7.848754362470e-01, 2.365814458295e-05, 2.7926e-01, 2.4419e-03, + 2DIAGNOSTIC, 42, -7.850345050678e-01, 2.382350800245e-05, 2.8295e-01, 3.6869e-03, + 2DIAGNOSTIC, 43, -7.851085773991e-01, 2.243371185847e-05, 2.8543e-01, 2.4800e-03, + 2DIAGNOSTIC, 44, -7.852755466250e-01, 2.144239561427e-05, 2.8820e-01, 2.7659e-03, + 2DIAGNOSTIC, 45, -7.856363184100e-01, 2.130992326754e-05, 2.9129e-01, 3.0921e-03, + 2DIAGNOSTIC, 46, -7.861304476786e-01, 2.388795698865e-05, 2.9501e-01, 3.7270e-03, + 2DIAGNOSTIC, 47, -7.863995277047e-01, 2.911725725022e-05, 2.9757e-01, 2.5530e-03, + 2DIAGNOSTIC, 48, -7.864388056683e-01, 3.292935602794e-05, 3.0045e-01, 2.8808e-03, + 2DIAGNOSTIC, 49, -7.864072873542e-01, 3.393444509991e-05, 3.0365e-01, 3.1991e-03, + 2DIAGNOSTIC, 50, -7.864227084215e-01, 3.198032647872e-05, 3.0607e-01, 2.4252e-03, + 2DIAGNOSTIC, 51, -7.862797598613e-01, 2.647506398341e-05, 3.0879e-01, 2.7211e-03, + 2DIAGNOSTIC, 52, -7.863290022936e-01, 2.018950698029e-05, 3.1156e-01, 2.7640e-03, + 2DIAGNOSTIC, 53, -7.863556628810e-01, 1.298199211500e-05, 3.1433e-01, 2.7680e-03, + 2DIAGNOSTIC, 54, -7.864483791162e-01, 6.597849140713e-06, 3.1707e-01, 2.7430e-03, + 2DIAGNOSTIC, 55, -7.864006172641e-01, 1.874096773765e-06, 3.1984e-01, 2.7740e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.911400476754e-01, 1.797693134862e+308, 3.9112e-01, 7.1280e-02, + 2DIAGNOSTIC, 2, -5.915608401470e-01, 1.797693134862e+308, 4.0541e-01, 1.4285e-02, + 2DIAGNOSTIC, 3, -5.923273652663e-01, 1.797693134862e+308, 4.1920e-01, 1.3795e-02, + 2DIAGNOSTIC, 4, -5.936269716244e-01, 1.797693134862e+308, 4.3354e-01, 1.4336e-02, + 2DIAGNOSTIC, 5, -5.954305998505e-01, 1.797693134862e+308, 4.4774e-01, 1.4205e-02, + 2DIAGNOSTIC, 6, -5.965837939103e-01, 1.797693134862e+308, 4.6198e-01, 1.4238e-02, + 2DIAGNOSTIC, 7, -5.979375472801e-01, 1.797693134862e+308, 4.7618e-01, 1.4203e-02, + 2DIAGNOSTIC, 8, -5.999366455378e-01, 1.797693134862e+308, 4.9547e-01, 1.9288e-02, + 2DIAGNOSTIC, 9, -6.008161756583e-01, 1.797693134862e+308, 5.0917e-01, 1.3699e-02, + 2DIAGNOSTIC, 10, -6.012699317380e-01, 1.231496806787e-03, 5.2319e-01, 1.4016e-02, + 2DIAGNOSTIC, 11, -6.024989862224e-01, 1.134229954870e-03, 5.4374e-01, 2.0550e-02, + 2DIAGNOSTIC, 12, -6.025716142229e-01, 9.704565473939e-04, 5.5759e-01, 1.3849e-02, + 2DIAGNOSTIC, 13, -6.026407553488e-01, 7.746514363857e-04, 5.7143e-01, 1.3839e-02, + 2DIAGNOSTIC, 14, -6.027007024797e-01, 5.823916328615e-04, 5.9267e-01, 2.1243e-02, + 2DIAGNOSTIC, 15, -6.026953448356e-01, 4.199973006137e-04, 6.0792e-01, 1.5249e-02, + 2DIAGNOSTIC, 16, -6.027017764921e-01, 2.735325526256e-04, 6.2394e-01, 1.6018e-02, + 2DIAGNOSTIC, 17, -6.027015437613e-01, 1.559679920723e-04, 6.4039e-01, 1.6453e-02, + 2DIAGNOSTIC, 18, -6.026997766084e-01, 8.993140164096e-05, 6.5457e-01, 1.4187e-02, + 2DIAGNOSTIC, 19, -6.026925627006e-01, 4.454486548352e-05, 6.6900e-01, 1.4429e-02, + 2DIAGNOSTIC, 20, -6.026907848947e-01, 9.668975440878e-06, 6.8115e-01, 1.2147e-02, + 2DIAGNOSTIC, 21, -6.026893888143e-01, 5.084782081465e-06, 6.9305e-01, 1.1901e-02, + 2DIAGNOSTIC, 22, -6.026914218148e-01, 2.163909886312e-06, 7.0646e-01, 1.3411e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.993589436259e-01, 1.797693134862e+308, 9.2410e-01, 2.1764e-01, + Elapsed time (stage 1): 9.4448e-01 + + +Total elapsed time: 2.2186e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:58:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 34 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 52 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 86.89% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 86.89% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[14911 879 480 384 14990 3335 559 562 648 0 1426 5610 + 0 0 225 0 0 200 189 0 0 169 0 0 + 0 0 0 0 0 0 0 173 0 0] +[185031 30338 28507 40767 16981 10219 15060 12183 12656 8648 + 831 2756 5185 1248 857 897 457 840 886 943 + 181 262 181 404 206 0 0 0 0 0 + 0 0 0 0] +[ 175 360 265 0 0 191 8691 0 0 631 0 0 + 0 2722 0 1832 15517 14481 0 7521 0 0 0 0 + 819 6594 795 210 0 0 0 0 0 0] +[ 66753 1511 7835 1363 0 14361 734 697 2277 0 + 368 0 2448 0 1769 0 188283 2482 767 330 + 0 1052 865 609 14368 0 17206 0 236 476 + 1073 737 793 1178] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:05:35 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:05:40 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:33 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:33 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:33 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:43 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:46 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC009 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:58 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:10:23 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:12:08 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:12:09 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:13:25 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:13:26 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55dd9d03ad20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.2435, 112.093, -136.649] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dd9ceb1730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fd3cab16010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55dd9d03e020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 50.8095, -129.488] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dd9d0440c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fd3c7457010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55dd9d054840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [74.2435, 112.093, -136.649] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dd9d040890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fd3c2783010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55dd9d0583e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 50.8095, -129.488] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55dd9d047130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fd3bf0c4010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.353885715720e-01, 1.797693134862e+308, 2.3746e-01, 2.3746e-01, + 2DIAGNOSTIC, 2, -4.363672491289e-01, 1.797693134862e+308, 2.3873e-01, 1.2619e-03, + 2DIAGNOSTIC, 3, -4.388297089781e-01, 1.797693134862e+308, 2.4011e-01, 1.3831e-03, + 2DIAGNOSTIC, 4, -4.436267515299e-01, 1.797693134862e+308, 2.4132e-01, 1.2109e-03, + 2DIAGNOSTIC, 5, -4.484997539013e-01, 1.797693134862e+308, 2.4264e-01, 1.3220e-03, + 2DIAGNOSTIC, 6, -4.581598792372e-01, 1.797693134862e+308, 2.4392e-01, 1.2782e-03, + 2DIAGNOSTIC, 7, -4.724131384342e-01, 1.797693134862e+308, 2.4539e-01, 1.4729e-03, + 2DIAGNOSTIC, 8, -4.843636812789e-01, 1.797693134862e+308, 2.4690e-01, 1.5030e-03, + 2DIAGNOSTIC, 9, -4.873950775233e-01, 1.797693134862e+308, 2.4821e-01, 1.3149e-03, + 2DIAGNOSTIC, 10, -5.258447698612e-01, 1.117535437713e-02, 2.4974e-01, 1.5330e-03, + 2DIAGNOSTIC, 11, -5.305710671679e-01, 1.211942182545e-02, 2.5138e-01, 1.6360e-03, + 2DIAGNOSTIC, 12, -5.366641294590e-01, 1.215898736923e-02, 2.5303e-01, 1.6520e-03, + 2DIAGNOSTIC, 13, -5.438050795836e-01, 1.154423239258e-02, 2.5588e-01, 2.8429e-03, + 2DIAGNOSTIC, 14, -5.442970457456e-01, 1.020674593473e-02, 2.5758e-01, 1.7021e-03, + 2DIAGNOSTIC, 15, -5.461909706817e-01, 8.387898577661e-03, 2.5921e-01, 1.6289e-03, + 2DIAGNOSTIC, 16, -5.474460707934e-01, 6.436366676513e-03, 2.6129e-01, 2.0821e-03, + 2DIAGNOSTIC, 17, -5.460939790113e-01, 4.591417091055e-03, 2.6302e-01, 1.7340e-03, + 2DIAGNOSTIC, 18, -5.462282882998e-01, 2.944700229918e-03, 2.6455e-01, 1.5240e-03, + 2DIAGNOSTIC, 19, -5.463173683315e-01, 1.279304771373e-03, 2.6596e-01, 1.4141e-03, + 2DIAGNOSTIC, 20, -5.468027723165e-01, 7.757416208046e-04, 2.6742e-01, 1.4541e-03, + 2DIAGNOSTIC, 21, -5.469113237736e-01, 3.786795258503e-04, 2.6888e-01, 1.4632e-03, + 2DIAGNOSTIC, 22, -5.470906420690e-01, 1.414889576765e-04, 2.7078e-01, 1.9040e-03, + 2DIAGNOSTIC, 23, -5.474762459362e-01, 9.701694487936e-05, 2.7621e-01, 5.4281e-03, + 2DIAGNOSTIC, 24, -5.474762450623e-01, 5.732795146253e-05, 2.7769e-01, 1.4770e-03, + 2DIAGNOSTIC, 25, -5.474762462738e-01, 5.670309218769e-05, 2.7910e-01, 1.4141e-03, + 2DIAGNOSTIC, 26, -5.474762483224e-01, 7.859240641303e-05, 2.8058e-01, 1.4741e-03, + 2DIAGNOSTIC, 27, -5.474762517861e-01, 6.384764194953e-05, 2.8207e-01, 1.4901e-03, + 2DIAGNOSTIC, 28, -5.474762576420e-01, 4.693136169926e-05, 2.8352e-01, 1.4529e-03, + 2DIAGNOSTIC, 29, -5.474762675413e-01, 2.841907897454e-05, 2.8504e-01, 1.5209e-03, + 2DIAGNOSTIC, 30, -5.474762842721e-01, 1.761498079793e-05, 2.8650e-01, 1.4582e-03, + 2DIAGNOSTIC, 31, -5.474763124983e-01, 7.897411494200e-06, 2.8795e-01, 1.4510e-03, + 2DIAGNOSTIC, 32, -5.474763576188e-01, 1.050498713587e-06, 2.8943e-01, 1.4839e-03, + 2DIAGNOSTIC, 33, -5.474764337565e-01, 1.019351343695e-06, 2.9090e-01, 1.4651e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.997277361857e-01, 1.797693134862e+308, 5.1480e-01, 2.2391e-01, + 2DIAGNOSTIC, 2, -3.998233690452e-01, 1.797693134862e+308, 5.1693e-01, 2.1241e-03, + 2DIAGNOSTIC, 3, -4.024109052846e-01, 1.797693134862e+308, 5.1897e-01, 2.0409e-03, + 2DIAGNOSTIC, 4, -4.047742445566e-01, 1.797693134862e+308, 5.2111e-01, 2.1381e-03, + 2DIAGNOSTIC, 5, -4.061377470743e-01, 1.797693134862e+308, 5.2327e-01, 2.1670e-03, + 2DIAGNOSTIC, 6, -4.080467208052e-01, 1.797693134862e+308, 5.2552e-01, 2.2418e-03, + 2DIAGNOSTIC, 7, -4.108523976126e-01, 1.797693134862e+308, 5.2802e-01, 2.5010e-03, + 2DIAGNOSTIC, 8, -4.184039125385e-01, 1.797693134862e+308, 5.3006e-01, 2.0449e-03, + 2DIAGNOSTIC, 9, -4.230788927354e-01, 1.797693134862e+308, 5.3249e-01, 2.4269e-03, + 2DIAGNOSTIC, 10, -4.302498096129e-01, 4.520339383848e-03, 5.3544e-01, 2.9531e-03, + 2DIAGNOSTIC, 11, -4.353223703004e-01, 4.940933431085e-03, 5.3956e-01, 4.1201e-03, + 2DIAGNOSTIC, 12, -4.367966058789e-01, 4.930328648671e-03, 5.4191e-01, 2.3501e-03, + 2DIAGNOSTIC, 13, -4.386525125893e-01, 4.707957590863e-03, 5.4429e-01, 2.3749e-03, + 2DIAGNOSTIC, 14, -4.417317557526e-01, 4.352362874510e-03, 5.4666e-01, 2.3689e-03, + 2DIAGNOSTIC, 15, -4.450527262317e-01, 3.855988433654e-03, 5.4929e-01, 2.6300e-03, + 2DIAGNOSTIC, 16, -4.466656287426e-01, 3.218142544052e-03, 5.5141e-01, 2.1241e-03, + 2DIAGNOSTIC, 17, -4.474195617806e-01, 2.502827467331e-03, 5.5362e-01, 2.2070e-03, + 2DIAGNOSTIC, 18, -4.481671059630e-01, 1.950835244187e-03, 5.5670e-01, 3.0851e-03, + 2DIAGNOSTIC, 19, -4.486329059828e-01, 1.454145279002e-03, 5.5920e-01, 2.5001e-03, + 2DIAGNOSTIC, 20, -4.488025963005e-01, 1.113861835291e-03, 5.6168e-01, 2.4791e-03, + 2DIAGNOSTIC, 21, -4.489078291615e-01, 8.679098437998e-04, 5.6387e-01, 2.1858e-03, + 2DIAGNOSTIC, 22, -4.489869091833e-01, 6.121072954363e-04, 5.6604e-01, 2.1729e-03, + 2DIAGNOSTIC, 23, -4.491800504693e-01, 3.803384358446e-04, 5.6822e-01, 2.1839e-03, + 2DIAGNOSTIC, 24, -4.501148970945e-01, 2.414678826346e-04, 5.7041e-01, 2.1870e-03, + 2DIAGNOSTIC, 25, -4.540851634851e-01, 2.822612719622e-04, 5.7296e-01, 2.5442e-03, + 2DIAGNOSTIC, 26, -4.568255895948e-01, 4.006066127151e-04, 5.7669e-01, 3.7360e-03, + 2DIAGNOSTIC, 27, -4.570180888463e-01, 4.944016431346e-04, 5.7888e-01, 2.1911e-03, + 2DIAGNOSTIC, 28, -4.572758343278e-01, 5.599651793435e-04, 5.8109e-01, 2.2080e-03, + 2DIAGNOSTIC, 29, -4.575056141669e-01, 5.838869408342e-04, 5.8326e-01, 2.1691e-03, + 2DIAGNOSTIC, 30, -4.585118882422e-01, 5.748998325441e-04, 5.8555e-01, 2.2888e-03, + 2DIAGNOSTIC, 31, -4.653466314078e-01, 6.562227046613e-04, 5.8780e-01, 2.2490e-03, + 2DIAGNOSTIC, 32, -4.703219088106e-01, 7.699386291486e-04, 5.9098e-01, 3.1822e-03, + 2DIAGNOSTIC, 33, -4.727388528387e-01, 8.548899630865e-04, 5.9348e-01, 2.4998e-03, + 2DIAGNOSTIC, 34, -4.737578378928e-01, 8.909494293770e-04, 5.9564e-01, 2.1589e-03, + 2DIAGNOSTIC, 35, -4.748021726089e-01, 9.320510496917e-04, 5.9877e-01, 3.1312e-03, + 2DIAGNOSTIC, 36, -4.753825832961e-01, 9.395799773601e-04, 6.0431e-01, 5.5370e-03, + 2DIAGNOSTIC, 37, -4.758234767942e-01, 8.668487634880e-04, 6.0681e-01, 2.5051e-03, + 2DIAGNOSTIC, 38, -4.770918390421e-01, 7.426728643566e-04, 6.0971e-01, 2.8939e-03, + 2DIAGNOSTIC, 39, -4.776034295471e-01, 5.682622181069e-04, 6.1225e-01, 2.5461e-03, + 2DIAGNOSTIC, 40, -4.780155604884e-01, 3.700099495527e-04, 6.1548e-01, 3.2289e-03, + 2DIAGNOSTIC, 41, -4.783750490751e-01, 2.571768334236e-04, 6.1911e-01, 3.6330e-03, + 2DIAGNOSTIC, 42, -4.783262788297e-01, 1.994491273733e-04, 6.2139e-01, 2.2731e-03, + 2DIAGNOSTIC, 43, -4.784346979995e-01, 1.626256120491e-04, 6.2362e-01, 2.2311e-03, + 2DIAGNOSTIC, 44, -4.787301012551e-01, 1.306585565431e-04, 6.2591e-01, 2.2912e-03, + 2DIAGNOSTIC, 45, -4.789069108346e-01, 1.048474064633e-04, 6.2852e-01, 2.6121e-03, + 2DIAGNOSTIC, 46, -4.789016458094e-01, 7.823730113230e-05, 6.3083e-01, 2.3110e-03, + 2DIAGNOSTIC, 47, -4.788954525181e-01, 5.102489637370e-05, 6.3311e-01, 2.2759e-03, + 2DIAGNOSTIC, 48, -4.788824917117e-01, 3.663800732561e-05, 6.3533e-01, 2.2180e-03, + 2DIAGNOSTIC, 49, -4.789736641935e-01, 2.699507127089e-05, 6.3760e-01, 2.2750e-03, + 2DIAGNOSTIC, 50, -4.798308685958e-01, 3.099594543300e-05, 6.3991e-01, 2.3100e-03, + 2DIAGNOSTIC, 51, -4.808686420126e-01, 4.891851613942e-05, 6.4255e-01, 2.6369e-03, + 2DIAGNOSTIC, 52, -4.830420284158e-01, 8.692241568522e-05, 6.4516e-01, 2.6109e-03, + 2DIAGNOSTIC, 53, -4.936443589205e-01, 2.410668158801e-04, 6.4872e-01, 3.5620e-03, + 2DIAGNOSTIC, 54, -5.005903527812e-01, 4.465151315170e-04, 6.5669e-01, 7.9679e-03, + 2DIAGNOSTIC, 55, -5.005903180070e-01, 6.024031336471e-04, 6.5990e-01, 3.2098e-03, + 2DIAGNOSTIC, 56, -5.005904783610e-01, 6.969662027380e-04, 6.6285e-01, 2.9531e-03, + 2DIAGNOSTIC, 57, -5.005907495016e-01, 7.215526865393e-04, 6.6526e-01, 2.4109e-03, + 2DIAGNOSTIC, 58, -5.005912079278e-01, 6.738720615128e-04, 6.6755e-01, 2.2860e-03, + 2DIAGNOSTIC, 59, -5.005919829251e-01, 5.628787626513e-04, 6.6990e-01, 2.3508e-03, + 2DIAGNOSTIC, 60, -5.005932928782e-01, 4.122409634179e-04, 6.7228e-01, 2.3849e-03, + 2DIAGNOSTIC, 61, -5.005955064112e-01, 2.397669167348e-04, 6.7463e-01, 2.3460e-03, + 2DIAGNOSTIC, 62, -5.005992434097e-01, 6.981401299546e-05, 6.7699e-01, 2.3630e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.456318039861e-01, 1.797693134862e+308, 9.3144e-01, 2.5445e-01, + 2DIAGNOSTIC, 2, -3.470085277477e-01, 1.797693134862e+308, 9.4356e-01, 1.2115e-02, + 2DIAGNOSTIC, 3, -3.492643292934e-01, 1.797693134862e+308, 9.5560e-01, 1.2045e-02, + 2DIAGNOSTIC, 4, -3.520494983582e-01, 1.797693134862e+308, 9.6859e-01, 1.2988e-02, + 2DIAGNOSTIC, 5, -3.544404684401e-01, 1.797693134862e+308, 9.8045e-01, 1.1864e-02, + 2DIAGNOSTIC, 6, -3.570034114091e-01, 1.797693134862e+308, 9.9261e-01, 1.2158e-02, + 2DIAGNOSTIC, 7, -3.581083368874e-01, 1.797693134862e+308, 1.0045e+00, 1.1882e-02, + 2DIAGNOSTIC, 8, -3.608834472473e-01, 1.797693134862e+308, 1.0163e+00, 1.1827e-02, + 2DIAGNOSTIC, 9, -3.698223177839e-01, 1.797693134862e+308, 1.0317e+00, 1.5357e-02, + 2DIAGNOSTIC, 10, -3.754391137162e-01, 4.871582656092e-03, 1.0454e+00, 1.3720e-02, + 2DIAGNOSTIC, 11, -3.827103133367e-01, 5.341211284240e-03, 1.0573e+00, 1.1913e-02, + 2DIAGNOSTIC, 12, -4.248142126265e-01, 8.022775795079e-03, 1.0721e+00, 1.4776e-02, + 2DIAGNOSTIC, 13, -5.592256798984e-01, 1.705953362061e-02, 1.0961e+00, 2.3981e-02, + 2DIAGNOSTIC, 14, -5.714264227001e-01, 2.330491480289e-02, 1.1091e+00, 1.3061e-02, + 2DIAGNOSTIC, 15, -6.068623958300e-01, 2.799980476862e-02, 1.1242e+00, 1.5045e-02, + 2DIAGNOSTIC, 16, -6.158091440350e-01, 2.985202671804e-02, 1.1384e+00, 1.4263e-02, + 2DIAGNOSTIC, 17, -6.170473891687e-01, 2.877537635432e-02, 1.1507e+00, 1.2281e-02, + 2DIAGNOSTIC, 18, -6.174786624176e-01, 2.531474323449e-02, 1.1629e+00, 1.2212e-02, + 2DIAGNOSTIC, 19, -6.181329138701e-01, 2.036764897194e-02, 1.1789e+00, 1.6017e-02, + 2DIAGNOSTIC, 20, -6.183411763437e-01, 1.446286179442e-02, 1.1950e+00, 1.6008e-02, + 2DIAGNOSTIC, 21, -6.184778031617e-01, 8.200200718530e-03, 1.2072e+00, 1.2246e-02, + 2DIAGNOSTIC, 22, -6.191261345732e-01, 3.002612560700e-03, 1.2212e+00, 1.4040e-02, + 2DIAGNOSTIC, 23, -6.197878091375e-01, 1.586421817045e-03, 1.2392e+00, 1.7923e-02, + 2DIAGNOSTIC, 24, -6.198929924787e-01, 4.510810026400e-04, 1.2537e+00, 1.4570e-02, + 2DIAGNOSTIC, 25, -6.201519861797e-01, 2.081062224057e-04, 1.2662e+00, 1.2434e-02, + 2DIAGNOSTIC, 26, -6.201843623527e-01, 1.663110025899e-04, 1.2780e+00, 1.1840e-02, + 2DIAGNOSTIC, 27, -6.204322340830e-01, 1.439242991488e-04, 1.2897e+00, 1.1694e-02, + 2DIAGNOSTIC, 28, -6.210652570769e-01, 1.309179572729e-04, 1.3025e+00, 1.2773e-02, + 2DIAGNOSTIC, 29, -6.223286688685e-01, 1.434644051137e-04, 1.3219e+00, 1.9419e-02, + 2DIAGNOSTIC, 30, -6.223683942242e-01, 1.459608215645e-04, 1.3374e+00, 1.5459e-02, + 2DIAGNOSTIC, 31, -6.223840728154e-01, 1.375931761548e-04, 1.3508e+00, 1.3407e-02, + 2DIAGNOSTIC, 32, -6.223504685673e-01, 1.275128743862e-04, 1.3640e+00, 1.3291e-02, + 2DIAGNOSTIC, 33, -6.223386514613e-01, 1.167117171795e-04, 1.3782e+00, 1.4140e-02, + 2DIAGNOSTIC, 34, -6.223701674672e-01, 9.749867567457e-05, 1.3900e+00, 1.1812e-02, + 2DIAGNOSTIC, 35, -6.223778463699e-01, 7.463996852449e-05, 1.4038e+00, 1.3847e-02, + 2DIAGNOSTIC, 36, -6.223950918608e-01, 4.735140139204e-05, 1.4155e+00, 1.1636e-02, + 2DIAGNOSTIC, 37, -6.224671268123e-01, 2.197146298528e-05, 1.4271e+00, 1.1614e-02, + 2DIAGNOSTIC, 38, -6.225159352715e-01, 5.143269354864e-06, 1.4388e+00, 1.1667e-02, + 2DIAGNOSTIC, 39, -6.226846293271e-01, 8.261090377805e-06, 1.4543e+00, 1.5484e-02, + 2DIAGNOSTIC, 40, -6.227673221815e-01, 1.205449071794e-05, 1.4666e+00, 1.2372e-02, + 2DIAGNOSTIC, 41, -6.228286508351e-01, 1.557538138625e-05, 1.4784e+00, 1.1822e-02, + 2DIAGNOSTIC, 42, -6.230607900081e-01, 1.999057457080e-05, 1.4958e+00, 1.7335e-02, + 2DIAGNOSTIC, 43, -6.230977442246e-01, 2.257215958374e-05, 1.5111e+00, 1.5308e-02, + 2DIAGNOSTIC, 44, -6.231392456484e-01, 2.381672119992e-05, 1.5273e+00, 1.6195e-02, + 2DIAGNOSTIC, 45, -6.231172555332e-01, 2.266405269343e-05, 1.5390e+00, 1.1745e-02, + 2DIAGNOSTIC, 46, -6.232624662514e-01, 2.131065714565e-05, 1.5510e+00, 1.1941e-02, + 2DIAGNOSTIC, 47, -6.232932989657e-01, 1.912096046683e-05, 1.5629e+00, 1.1922e-02, + 2DIAGNOSTIC, 48, -6.233110726546e-01, 1.594859600209e-05, 1.5767e+00, 1.3849e-02, + 2DIAGNOSTIC, 49, -6.232916895001e-01, 1.306411466475e-05, 1.5887e+00, 1.1935e-02, + 2DIAGNOSTIC, 50, -6.232847992178e-01, 9.928598009544e-06, 1.6025e+00, 1.3798e-02, + 2DIAGNOSTIC, 51, -6.233065733360e-01, 6.800145311556e-06, 1.6150e+00, 1.2538e-02, + 2DIAGNOSTIC, 52, -6.233513154919e-01, 5.894801489277e-06, 1.6292e+00, 1.4163e-02, + 2DIAGNOSTIC, 53, -6.233227427311e-01, 4.602931635539e-06, 1.6431e+00, 1.3878e-02, + 2DIAGNOSTIC, 54, -6.233708595736e-01, 3.871784546621e-06, 1.6609e+00, 1.7863e-02, + 2DIAGNOSTIC, 55, -6.233566435903e-01, 2.489161207427e-06, 1.6752e+00, 1.4288e-02, + 2DIAGNOSTIC, 56, -6.233632940103e-01, 2.340770687816e-06, 1.6875e+00, 1.2304e-02, + 2DIAGNOSTIC, 57, -6.234054317412e-01, 2.667075835214e-06, 1.7015e+00, 1.3971e-02, + 2DIAGNOSTIC, 58, -6.234619457219e-01, 3.423406000767e-06, 1.7281e+00, 2.6592e-02, + 2DIAGNOSTIC, 59, -6.234784669389e-01, 3.852668226875e-06, 1.7422e+00, 1.4142e-02, + 2DIAGNOSTIC, 60, -6.234817767848e-01, 3.926468147692e-06, 1.7543e+00, 1.2064e-02, + 2DIAGNOSTIC, 61, -6.234700472580e-01, 3.758264832607e-06, 1.7662e+00, 1.1924e-02, + 2DIAGNOSTIC, 62, -6.234941126044e-01, 3.850013312684e-06, 1.7805e+00, 1.4302e-02, + 2DIAGNOSTIC, 63, -6.235001645756e-01, 3.417685622030e-06, 1.7914e+00, 1.0890e-02, + 2DIAGNOSTIC, 64, -6.234913453678e-01, 3.034395593522e-06, 1.8038e+00, 1.2389e-02, + 2DIAGNOSTIC, 65, -6.235308564216e-01, 2.631796225630e-06, 1.8178e+00, 1.4011e-02, + 2DIAGNOSTIC, 66, -6.235157123995e-01, 1.966991047379e-06, 1.8302e+00, 1.2417e-02, + 2DIAGNOSTIC, 67, -6.235003373183e-01, 1.375383692288e-06, 1.8412e+00, 1.1008e-02, + 2DIAGNOSTIC, 68, -6.234856650269e-01, 1.025024163107e-06, 1.8537e+00, 1.2495e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.213538348351e-01, 1.797693134862e+308, 2.2619e+00, 4.0820e-01, + 2DIAGNOSTIC, 2, -5.219626567147e-01, 1.797693134862e+308, 2.3359e+00, 7.4016e-02, + 2DIAGNOSTIC, 3, -5.224190649791e-01, 1.797693134862e+308, 2.4090e+00, 7.3085e-02, + 2DIAGNOSTIC, 4, -5.226178136985e-01, 1.797693134862e+308, 2.4836e+00, 7.4611e-02, + 2DIAGNOSTIC, 5, -5.227536430671e-01, 1.797693134862e+308, 2.5697e+00, 8.6033e-02, + 2DIAGNOSTIC, 6, -5.228856429995e-01, 1.797693134862e+308, 2.6483e+00, 7.8604e-02, + 2DIAGNOSTIC, 7, -5.230326216851e-01, 1.797693134862e+308, 2.7823e+00, 1.3404e-01, + 2DIAGNOSTIC, 8, -5.230660725844e-01, 1.797693134862e+308, 2.8778e+00, 9.5529e-02, + 2DIAGNOSTIC, 9, -5.230725642081e-01, 1.797693134862e+308, 2.9629e+00, 8.5053e-02, + 2DIAGNOSTIC, 10, -5.230788478288e-01, 1.861395078925e-04, 3.0625e+00, 9.9581e-02, + 2DIAGNOSTIC, 11, -5.231172806699e-01, 1.126566406167e-04, 3.1485e+00, 8.6037e-02, + 2DIAGNOSTIC, 12, -5.231480113471e-01, 7.000146635142e-05, 3.2359e+00, 8.7398e-02, + 2DIAGNOSTIC, 13, -5.231914934845e-01, 4.859865967992e-05, 3.3226e+00, 8.6729e-02, + 2DIAGNOSTIC, 14, -5.233620859679e-01, 4.038953400100e-05, 3.4234e+00, 1.0072e-01, + 2DIAGNOSTIC, 15, -5.236179506772e-01, 4.378699866701e-05, 3.5471e+00, 1.2373e-01, + 2DIAGNOSTIC, 16, -5.237109616045e-01, 5.027465385884e-05, 3.6451e+00, 9.8054e-02, + 2DIAGNOSTIC, 17, -5.237114815987e-01, 5.631972958354e-05, 3.7301e+00, 8.4936e-02, + 2DIAGNOSTIC, 18, -5.237376358353e-01, 5.859198546389e-05, 3.8155e+00, 8.5404e-02, + 2DIAGNOSTIC, 19, -5.237381121067e-01, 5.548889387508e-05, 3.9139e+00, 9.8468e-02, + 2DIAGNOSTIC, 20, -5.237297993882e-01, 4.750490640131e-05, 4.0246e+00, 1.1061e-01, + 2DIAGNOSTIC, 21, -5.237286460317e-01, 3.698447228727e-05, 4.1215e+00, 9.6918e-02, + 2DIAGNOSTIC, 22, -5.237272342236e-01, 2.494446990660e-05, 4.2134e+00, 9.1901e-02, + 2DIAGNOSTIC, 23, -5.237257427795e-01, 1.272615575688e-05, 4.2955e+00, 8.2088e-02, + 2DIAGNOSTIC, 24, -5.237243488117e-01, 4.151746029857e-06, 4.3905e+00, 9.5014e-02, + 2DIAGNOSTIC, 25, -5.237229260839e-01, 1.481945604606e-06, 4.4802e+00, 8.9680e-02, + Elapsed time (stage 0): 4.6206e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.702884539255e-01, 1.797693134862e+308, 1.9927e-01, 1.9927e-01, + 2DIAGNOSTIC, 2, -8.727531331608e-01, 1.797693134862e+308, 2.0071e-01, 1.4429e-03, + 2DIAGNOSTIC, 3, -8.747933174620e-01, 1.797693134862e+308, 2.0197e-01, 1.2600e-03, + 2DIAGNOSTIC, 4, -8.776664566063e-01, 1.797693134862e+308, 2.0320e-01, 1.2300e-03, + 2DIAGNOSTIC, 5, -8.818796574411e-01, 1.797693134862e+308, 2.0446e-01, 1.2531e-03, + 2DIAGNOSTIC, 6, -8.873196185825e-01, 1.797693134862e+308, 2.0566e-01, 1.2062e-03, + 2DIAGNOSTIC, 7, -8.982676589540e-01, 1.797693134862e+308, 2.0713e-01, 1.4691e-03, + 2DIAGNOSTIC, 8, -9.135281156685e-01, 1.797693134862e+308, 2.0867e-01, 1.5361e-03, + 2DIAGNOSTIC, 9, -9.201733805038e-01, 1.797693134862e+308, 2.1042e-01, 1.7509e-03, + 2DIAGNOSTIC, 10, -9.224682152724e-01, 4.187703640217e-03, 2.1217e-01, 1.7469e-03, + 2DIAGNOSTIC, 11, -9.265142190484e-01, 4.097296594996e-03, 2.1363e-01, 1.4620e-03, + 2DIAGNOSTIC, 12, -9.286281372922e-01, 3.771248272020e-03, 2.1516e-01, 1.5352e-03, + 2DIAGNOSTIC, 13, -9.306119602459e-01, 3.248900953028e-03, 2.1667e-01, 1.5039e-03, + 2DIAGNOSTIC, 14, -9.326709883988e-01, 2.619396496530e-03, 2.1812e-01, 1.4520e-03, + 2DIAGNOSTIC, 15, -9.337641110068e-01, 1.952050285557e-03, 2.1998e-01, 1.8561e-03, + 2DIAGNOSTIC, 16, -9.348165175236e-01, 1.317712011611e-03, 2.2215e-01, 2.1729e-03, + 2DIAGNOSTIC, 17, -9.413802209603e-01, 9.545352885179e-04, 2.2536e-01, 3.2079e-03, + 2DIAGNOSTIC, 18, -9.402247254349e-01, 7.846530094168e-04, 2.2721e-01, 1.8580e-03, + 2DIAGNOSTIC, 19, -9.411892733467e-01, 6.872111812286e-04, 2.2874e-01, 1.5240e-03, + 2DIAGNOSTIC, 20, -9.420403867580e-01, 5.847671191773e-04, 2.3041e-01, 1.6680e-03, + 2DIAGNOSTIC, 21, -9.433803503382e-01, 5.165602210162e-04, 2.3195e-01, 1.5450e-03, + 2DIAGNOSTIC, 22, -9.433842826670e-01, 4.346504353096e-04, 2.3335e-01, 1.4000e-03, + 2DIAGNOSTIC, 23, -9.451627685329e-01, 3.701282766360e-04, 2.3507e-01, 1.7200e-03, + 2DIAGNOSTIC, 24, -9.457431823630e-01, 3.112053128131e-04, 2.3657e-01, 1.4999e-03, + 2DIAGNOSTIC, 25, -9.458418260547e-01, 2.429455931248e-04, 2.3808e-01, 1.5101e-03, + 2DIAGNOSTIC, 26, -9.478598641022e-01, 1.916851402551e-04, 2.3949e-01, 1.4069e-03, + 2DIAGNOSTIC, 27, -9.492395978047e-01, 2.170989683026e-04, 2.4091e-01, 1.4241e-03, + 2DIAGNOSTIC, 28, -9.575711984904e-01, 2.986764338235e-04, 2.4305e-01, 2.1350e-03, + 2DIAGNOSTIC, 29, -9.577547973226e-01, 3.562685942207e-04, 2.4517e-01, 2.1260e-03, + 2DIAGNOSTIC, 30, -9.577732706200e-01, 3.862396156693e-04, 2.4663e-01, 1.4570e-03, + 2DIAGNOSTIC, 31, -9.575002385869e-01, 3.896295506620e-04, 2.4837e-01, 1.7371e-03, + 2DIAGNOSTIC, 32, -9.572466721024e-01, 3.527349786892e-04, 2.5039e-01, 2.0220e-03, + 2DIAGNOSTIC, 33, -9.579261621483e-01, 3.064570440442e-04, 2.5234e-01, 1.9491e-03, + 2DIAGNOSTIC, 34, -9.580734038497e-01, 2.403998543306e-04, 2.5390e-01, 1.5581e-03, + 2DIAGNOSTIC, 35, -9.585150846164e-01, 1.610399405838e-04, 2.5545e-01, 1.5540e-03, + 2DIAGNOSTIC, 36, -9.582862097710e-01, 8.677135878707e-05, 2.5701e-01, 1.5562e-03, + 2DIAGNOSTIC, 37, -9.603234640619e-01, 3.482817701660e-05, 2.5852e-01, 1.5152e-03, + 2DIAGNOSTIC, 38, -9.606561372609e-01, 5.137023883762e-05, 2.5993e-01, 1.4129e-03, + 2DIAGNOSTIC, 39, -9.608809545774e-01, 6.539156644987e-05, 2.6163e-01, 1.6952e-03, + 2DIAGNOSTIC, 40, -9.611061829291e-01, 7.469395828342e-05, 2.6309e-01, 1.4608e-03, + 2DIAGNOSTIC, 41, -9.620856961205e-01, 8.182708567824e-05, 2.6470e-01, 1.6131e-03, + 2DIAGNOSTIC, 42, -9.623563654889e-01, 8.051816384591e-05, 2.6711e-01, 2.4109e-03, + 2DIAGNOSTIC, 43, -9.624656048094e-01, 7.716512807780e-05, 2.6846e-01, 1.3480e-03, + 2DIAGNOSTIC, 44, -9.617832403074e-01, 6.317319847193e-05, 2.7001e-01, 1.5500e-03, + 2DIAGNOSTIC, 45, -9.620455466828e-01, 4.895728332719e-05, 2.7203e-01, 2.0170e-03, + 2DIAGNOSTIC, 46, -9.625059148585e-01, 3.174065137401e-05, 2.7348e-01, 1.4460e-03, + 2DIAGNOSTIC, 47, -9.614886705175e-01, 1.867000706541e-05, 2.7512e-01, 1.6432e-03, + 2DIAGNOSTIC, 48, -9.623931521060e-01, 1.256154968764e-05, 2.7756e-01, 2.4452e-03, + 2DIAGNOSTIC, 49, -9.625254406826e-01, 7.709939870988e-06, 2.7881e-01, 1.2462e-03, + 2DIAGNOSTIC, 50, -9.625795529211e-01, 3.853696847581e-06, 2.8020e-01, 1.3871e-03, + 2DIAGNOSTIC, 51, -9.626476057856e-01, 6.010147179297e-06, 2.8152e-01, 1.3220e-03, + 2DIAGNOSTIC, 52, -9.619650649637e-01, 5.206850618993e-06, 2.8329e-01, 1.7741e-03, + 2DIAGNOSTIC, 53, -9.620557566661e-01, 5.359977540375e-06, 2.8478e-01, 1.4849e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.509738087787e-01, 1.797693134862e+308, 4.9710e-01, 2.1233e-01, + 2DIAGNOSTIC, 2, -8.503255424356e-01, 1.797693134862e+308, 4.9925e-01, 2.1410e-03, + 2DIAGNOSTIC, 3, -8.512510415917e-01, 1.797693134862e+308, 5.0126e-01, 2.0142e-03, + 2DIAGNOSTIC, 4, -8.526028028631e-01, 1.797693134862e+308, 5.0357e-01, 2.3129e-03, + 2DIAGNOSTIC, 5, -8.536014266762e-01, 1.797693134862e+308, 5.0594e-01, 2.3711e-03, + 2DIAGNOSTIC, 6, -8.541838255349e-01, 1.797693134862e+308, 5.0826e-01, 2.3122e-03, + 2DIAGNOSTIC, 7, -8.547458866352e-01, 1.797693134862e+308, 5.1055e-01, 2.2900e-03, + 2DIAGNOSTIC, 8, -8.553630414589e-01, 1.797693134862e+308, 5.1259e-01, 2.0480e-03, + 2DIAGNOSTIC, 9, -8.581448872747e-01, 1.797693134862e+308, 5.1644e-01, 3.8419e-03, + 2DIAGNOSTIC, 10, -8.583428227807e-01, 6.083628799086e-04, 5.1867e-01, 2.2371e-03, + 2DIAGNOSTIC, 11, -8.583651520476e-01, 5.787513115301e-04, 5.2124e-01, 2.5630e-03, + 2DIAGNOSTIC, 12, -8.581765557371e-01, 4.803869683354e-04, 5.2388e-01, 2.6429e-03, + 2DIAGNOSTIC, 13, -8.580940200483e-01, 3.748495184964e-04, 5.2655e-01, 2.6679e-03, + 2DIAGNOSTIC, 14, -8.580262764304e-01, 2.796373409023e-04, 5.2883e-01, 2.2881e-03, + 2DIAGNOSTIC, 15, -8.580388403954e-01, 1.938920365146e-04, 5.3107e-01, 2.2399e-03, + 2DIAGNOSTIC, 16, -8.581833895232e-01, 1.171081622601e-04, 5.3457e-01, 3.4950e-03, + 2DIAGNOSTIC, 17, -8.582735935785e-01, 5.187181013985e-05, 5.3731e-01, 2.7370e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.090908638844e-01, 1.797693134862e+308, 7.8071e-01, 2.4340e-01, + 2DIAGNOSTIC, 2, -7.113499138498e-01, 1.797693134862e+308, 7.9408e-01, 1.3370e-02, + 2DIAGNOSTIC, 3, -7.139677347702e-01, 1.797693134862e+308, 8.0890e-01, 1.4821e-02, + 2DIAGNOSTIC, 4, -7.171281409480e-01, 1.797693134862e+308, 8.2261e-01, 1.3706e-02, + 2DIAGNOSTIC, 5, -7.193452560667e-01, 1.797693134862e+308, 8.3592e-01, 1.3310e-02, + 2DIAGNOSTIC, 6, -7.211095553776e-01, 1.797693134862e+308, 8.5028e-01, 1.4365e-02, + 2DIAGNOSTIC, 7, -7.234456157691e-01, 1.797693134862e+308, 8.6382e-01, 1.3540e-02, + 2DIAGNOSTIC, 8, -7.265504122601e-01, 1.797693134862e+308, 8.8337e-01, 1.9543e-02, + 2DIAGNOSTIC, 9, -7.270347877708e-01, 1.797693134862e+308, 8.9737e-01, 1.4000e-02, + 2DIAGNOSTIC, 10, -7.279085580255e-01, 1.764285056461e-03, 9.1110e-01, 1.3739e-02, + 2DIAGNOSTIC, 11, -7.290658588713e-01, 1.458723626902e-03, 9.3231e-01, 2.1202e-02, + 2DIAGNOSTIC, 12, -7.293926967418e-01, 1.156701849209e-03, 9.4560e-01, 1.3293e-02, + 2DIAGNOSTIC, 13, -7.294718279580e-01, 8.767859141742e-04, 9.5970e-01, 1.4104e-02, + 2DIAGNOSTIC, 14, -7.296708085052e-01, 6.520867774527e-04, 9.7314e-01, 1.3440e-02, + 2DIAGNOSTIC, 15, -7.302402001011e-01, 4.715546657563e-04, 9.8718e-01, 1.4035e-02, + 2DIAGNOSTIC, 16, -7.321752796782e-01, 3.601224183275e-04, 1.0087e+00, 2.1516e-02, + 2DIAGNOSTIC, 17, -7.324449926798e-01, 2.862892767415e-04, 1.0302e+00, 2.1468e-02, + 2DIAGNOSTIC, 18, -7.324668353229e-01, 2.634370250524e-04, 1.0439e+00, 1.3707e-02, + 2DIAGNOSTIC, 19, -7.324986104689e-01, 2.298981030474e-04, 1.0599e+00, 1.6036e-02, + 2DIAGNOSTIC, 20, -7.324897560824e-01, 1.946763183861e-04, 1.0786e+00, 1.8726e-02, + 2DIAGNOSTIC, 21, -7.324980175700e-01, 1.658549030278e-04, 1.0934e+00, 1.4788e-02, + 2DIAGNOSTIC, 22, -7.324843591162e-01, 1.298724514125e-04, 1.1083e+00, 1.4880e-02, + 2DIAGNOSTIC, 23, -7.324701963374e-01, 8.667817492158e-05, 1.1232e+00, 1.4942e-02, + 2DIAGNOSTIC, 24, -7.324580847565e-01, 4.234960689990e-05, 1.1381e+00, 1.4823e-02, + 2DIAGNOSTIC, 25, -7.324427447230e-01, 5.599354395348e-06, 1.1514e+00, 1.3361e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.095459018281e-01, 1.797693134862e+308, 1.5746e+00, 4.2315e-01, + 2DIAGNOSTIC, 2, -6.101422841358e-01, 1.797693134862e+308, 1.6557e+00, 8.1145e-02, + 2DIAGNOSTIC, 3, -6.105686459827e-01, 1.797693134862e+308, 1.7361e+00, 8.0353e-02, + 2DIAGNOSTIC, 4, -6.108662516475e-01, 1.797693134862e+308, 1.8178e+00, 8.1701e-02, + 2DIAGNOSTIC, 5, -6.111453448113e-01, 1.797693134862e+308, 1.9046e+00, 8.6858e-02, + 2DIAGNOSTIC, 6, -6.112928859139e-01, 1.797693134862e+308, 2.0350e+00, 1.3039e-01, + 2DIAGNOSTIC, 7, -6.113837802851e-01, 1.797693134862e+308, 2.1487e+00, 1.1366e-01, + 2DIAGNOSTIC, 8, -6.113705221646e-01, 1.797693134862e+308, 2.2523e+00, 1.0356e-01, + 2DIAGNOSTIC, 9, -6.113869920180e-01, 1.797693134862e+308, 2.3561e+00, 1.0381e-01, + 2DIAGNOSTIC, 10, -6.113910463613e-01, 1.781761549537e-04, 2.4606e+00, 1.0451e-01, + 2DIAGNOSTIC, 11, -6.113830828345e-01, 1.062932421830e-04, 2.5629e+00, 1.0238e-01, + 2DIAGNOSTIC, 12, -6.113860483047e-01, 6.014454422014e-05, 2.7059e+00, 1.4295e-01, + 2DIAGNOSTIC, 13, -6.113829196195e-01, 3.094308304889e-05, 2.7875e+00, 8.1554e-02, + 2DIAGNOSTIC, 14, -6.113804012479e-01, 1.296543939609e-05, 2.8830e+00, 9.5578e-02, + 2DIAGNOSTIC, 15, -6.113764664812e-01, 4.837330876376e-06, 2.9839e+00, 1.0087e-01, + 2DIAGNOSTIC, 16, -6.113762727441e-01, 1.691247686314e-06, 3.0796e+00, 9.5654e-02, + 2DIAGNOSTIC, 17, -6.113753358077e-01, 1.419038640517e-06, 3.1826e+00, 1.0306e-01, + Elapsed time (stage 1): 3.2971e+00 + + +Total elapsed time: 7.9216e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:13:36 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:13:37 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x556c6e8ae4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 50.8095, -129.488] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556c6e8b3fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f87e3a7f010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x556c6e8af850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 50.8095, -129.488] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556c6e8acf30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f87e03c0010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x556c6e8c6b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 50.8095, -129.488] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556c6e8b3550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f87dcd01010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x556c6e8cbd70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 50.8095, -129.488] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556c6e8c9c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f87d9642010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x556c6e8cdf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 50.8095, -129.488] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556c6e8cc3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f87d5f83010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x556c6e8ce540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [106.551, 50.8095, -129.488] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x556c6e8ce4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f87d28c4010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.656342344509e-01, 1.797693134862e+308, 1.9282e-01, 1.9282e-01, + 2DIAGNOSTIC, 2, -6.688980185612e-01, 1.797693134862e+308, 1.9482e-01, 2.0039e-03, + 2DIAGNOSTIC, 3, -6.734517146269e-01, 1.797693134862e+308, 1.9676e-01, 1.9360e-03, + 2DIAGNOSTIC, 4, -6.791009742915e-01, 1.797693134862e+308, 1.9869e-01, 1.9310e-03, + 2DIAGNOSTIC, 5, -6.844172894482e-01, 1.797693134862e+308, 2.0052e-01, 1.8280e-03, + 2DIAGNOSTIC, 6, -6.883162348612e-01, 1.797693134862e+308, 2.0224e-01, 1.7281e-03, + 2DIAGNOSTIC, 7, -6.894476426309e-01, 1.797693134862e+308, 2.0425e-01, 2.0061e-03, + 2DIAGNOSTIC, 8, -6.896726022771e-01, 1.797693134862e+308, 2.0652e-01, 2.2719e-03, + 2DIAGNOSTIC, 9, -6.904228851150e-01, 1.797693134862e+308, 2.0830e-01, 1.7800e-03, + 2DIAGNOSTIC, 10, -6.910277421445e-01, 2.547648321610e-03, 2.1054e-01, 2.2430e-03, + 2DIAGNOSTIC, 11, -6.925756822791e-01, 1.880060653872e-03, 2.1696e-01, 6.4189e-03, + 2DIAGNOSTIC, 12, -6.925755606306e-01, 1.268877085250e-03, 2.1896e-01, 1.9920e-03, + 2DIAGNOSTIC, 13, -6.925757336395e-01, 7.835417816510e-04, 2.2099e-01, 2.0332e-03, + 2DIAGNOSTIC, 14, -6.925760261303e-01, 4.625390663122e-04, 2.2296e-01, 1.9720e-03, + 2DIAGNOSTIC, 15, -6.925765204343e-01, 2.866018850104e-04, 2.2494e-01, 1.9789e-03, + 2DIAGNOSTIC, 16, -6.925773554572e-01, 2.065927024508e-04, 2.2692e-01, 1.9779e-03, + 2DIAGNOSTIC, 17, -6.925787627134e-01, 1.450112451388e-04, 2.2891e-01, 1.9939e-03, + 2DIAGNOSTIC, 18, -6.925811313557e-01, 8.259498089378e-05, 2.3088e-01, 1.9720e-03, + 2DIAGNOSTIC, 19, -6.925851170237e-01, 3.576666275085e-05, 2.3291e-01, 2.0280e-03, + 2DIAGNOSTIC, 20, -6.925918026083e-01, 2.216210442739e-06, 2.3515e-01, 2.2359e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.755244996645e-01, 1.797693134862e+308, 4.5288e-01, 2.1773e-01, + 2DIAGNOSTIC, 2, -5.770755331125e-01, 1.797693134862e+308, 4.6559e-01, 1.2718e-02, + 2DIAGNOSTIC, 3, -5.779708917525e-01, 1.797693134862e+308, 4.7823e-01, 1.2636e-02, + 2DIAGNOSTIC, 4, -5.783548343656e-01, 1.797693134862e+308, 4.9043e-01, 1.2197e-02, + 2DIAGNOSTIC, 5, -5.786780683421e-01, 1.797693134862e+308, 5.0294e-01, 1.2518e-02, + 2DIAGNOSTIC, 6, -5.789128851198e-01, 1.797693134862e+308, 5.1524e-01, 1.2296e-02, + 2DIAGNOSTIC, 7, -5.793332845731e-01, 1.797693134862e+308, 5.3014e-01, 1.4903e-02, + 2DIAGNOSTIC, 8, -5.793558503640e-01, 1.797693134862e+308, 5.5311e-01, 2.2962e-02, + 2DIAGNOSTIC, 9, -5.793285230526e-01, 1.797693134862e+308, 5.6604e-01, 1.2931e-02, + 2DIAGNOSTIC, 10, -5.793893493651e-01, 3.619387602824e-04, 5.7917e-01, 1.3136e-02, + 2DIAGNOSTIC, 11, -5.795519424253e-01, 2.166095021071e-04, 5.9225e-01, 1.3077e-02, + 2DIAGNOSTIC, 12, -5.796034942004e-01, 1.408286994744e-04, 6.0539e-01, 1.3145e-02, + 2DIAGNOSTIC, 13, -5.796724688323e-01, 1.005445666177e-04, 6.2429e-01, 1.8891e-02, + 2DIAGNOSTIC, 14, -5.796767343955e-01, 7.079851297580e-05, 6.4072e-01, 1.6438e-02, + 2DIAGNOSTIC, 15, -5.796723449683e-01, 4.916492927562e-05, 6.5546e-01, 1.4740e-02, + 2DIAGNOSTIC, 16, -5.796642138758e-01, 3.244967230707e-05, 6.6973e-01, 1.4263e-02, + 2DIAGNOSTIC, 17, -5.796570889377e-01, 2.679198638407e-05, 6.8388e-01, 1.4150e-02, + 2DIAGNOSTIC, 18, -5.796474118553e-01, 1.989061456233e-05, 6.9626e-01, 1.2382e-02, + 2DIAGNOSTIC, 19, -5.796404420190e-01, 1.117200719535e-05, 7.1032e-01, 1.4061e-02, + 2DIAGNOSTIC, 20, -5.796471356739e-01, 4.030722675637e-06, 7.2676e-01, 1.6439e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.829457709978e-01, 1.797693134862e+308, 1.0852e+00, 3.5842e-01, + 2DIAGNOSTIC, 2, -4.834573662352e-01, 1.797693134862e+308, 1.1781e+00, 9.2950e-02, + 2DIAGNOSTIC, 3, -4.837660767799e-01, 1.797693134862e+308, 1.2732e+00, 9.5030e-02, + 2DIAGNOSTIC, 4, -4.839368370161e-01, 1.797693134862e+308, 1.3663e+00, 9.3114e-02, + 2DIAGNOSTIC, 5, -4.841456658844e-01, 1.797693134862e+308, 1.4577e+00, 9.1477e-02, + 2DIAGNOSTIC, 6, -4.843839725538e-01, 1.797693134862e+308, 1.5524e+00, 9.4606e-02, + 2DIAGNOSTIC, 7, -4.846882026486e-01, 1.797693134862e+308, 1.7252e+00, 1.7286e-01, + 2DIAGNOSTIC, 8, -4.847065263947e-01, 1.797693134862e+308, 1.8563e+00, 1.3110e-01, + 2DIAGNOSTIC, 9, -4.847076611425e-01, 1.797693134862e+308, 1.9736e+00, 1.1728e-01, + 2DIAGNOSTIC, 10, -4.847073908616e-01, 2.323788452965e-04, 2.0795e+00, 1.0588e-01, + 2DIAGNOSTIC, 11, -4.847074631004e-01, 1.590148382158e-04, 2.2241e+00, 1.4460e-01, + 2DIAGNOSTIC, 12, -4.847054792406e-01, 1.083549180333e-04, 2.3161e+00, 9.1995e-02, + 2DIAGNOSTIC, 13, -4.847040111281e-01, 6.982760162658e-05, 2.4220e+00, 1.0595e-01, + 2DIAGNOSTIC, 14, -4.847034506071e-01, 3.789810826833e-05, 2.5152e+00, 9.3238e-02, + 2DIAGNOSTIC, 15, -4.847034219083e-01, 1.503195729551e-05, 2.6474e+00, 1.3219e-01, + 2DIAGNOSTIC, 16, -4.847037482556e-01, 2.281904511930e-06, 2.7529e+00, 1.0550e-01, + 2DIAGNOSTIC, 17, -4.847027469341e-01, 1.454810887931e-06, 2.8585e+00, 1.0557e-01, + 2DIAGNOSTIC, 18, -4.847018159592e-01, 1.326234541542e-06, 2.9526e+00, 9.4110e-02, + 2DIAGNOSTIC, 19, -4.847011998681e-01, 1.268532218809e-06, 3.0591e+00, 1.0649e-01, + 2DIAGNOSTIC, 20, -4.847018730925e-01, 1.264496817061e-06, 3.1513e+00, 9.2168e-02, + 2DIAGNOSTIC, 21, -4.847016123899e-01, 1.285659749078e-06, 3.2441e+00, 9.2800e-02, + 2DIAGNOSTIC, 22, -4.847034798537e-01, 1.324847355592e-06, 3.3510e+00, 1.0689e-01, + 2DIAGNOSTIC, 23, -4.847039132302e-01, 1.345559696608e-06, 3.4699e+00, 1.1890e-01, + 2DIAGNOSTIC, 24, -4.847032311508e-01, 1.337888438070e-06, 3.5774e+00, 1.0754e-01, + 2DIAGNOSTIC, 25, -4.847022960898e-01, 1.307351876298e-06, 3.6709e+00, 9.3536e-02, + 2DIAGNOSTIC, 26, -4.847016702915e-01, 1.269805795991e-06, 3.7623e+00, 9.1388e-02, + 2DIAGNOSTIC, 27, -4.846997960682e-01, 1.168115957587e-06, 3.8687e+00, 1.0639e-01, + 2DIAGNOSTIC, 28, -4.847005774565e-01, 1.072401441871e-06, 3.9632e+00, 9.4507e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.183856674310e-01, 1.797693134862e+308, 5.1664e+00, 1.2032e+00, + 2DIAGNOSTIC, 2, -4.185638694997e-01, 1.797693134862e+308, 5.7074e+00, 5.4097e-01, + 2DIAGNOSTIC, 3, -4.186400916961e-01, 1.797693134862e+308, 6.2552e+00, 5.4783e-01, + 2DIAGNOSTIC, 4, -4.187328826197e-01, 1.797693134862e+308, 7.3374e+00, 1.0822e+00, + 2DIAGNOSTIC, 5, -4.187332125143e-01, 1.797693134862e+308, 7.9859e+00, 6.4846e-01, + 2DIAGNOSTIC, 6, -4.187313816548e-01, 1.797693134862e+308, 8.8193e+00, 8.3348e-01, + 2DIAGNOSTIC, 7, -4.187314532471e-01, 1.797693134862e+308, 9.3518e+00, 5.3243e-01, + 2DIAGNOSTIC, 8, -4.187310510569e-01, 1.797693134862e+308, 9.9708e+00, 6.1905e-01, + 2DIAGNOSTIC, 9, -4.187308444585e-01, 1.797693134862e+308, 1.0713e+01, 7.4233e-01, + 2DIAGNOSTIC, 10, -4.187306359341e-01, 4.077106506553e-05, 1.1255e+01, 5.4146e-01, + 2DIAGNOSTIC, 11, -4.187306468963e-01, 1.791532625144e-05, 1.1976e+01, 7.2101e-01, + 2DIAGNOSTIC, 12, -4.187304518178e-01, 7.531911662778e-06, 1.2558e+01, 5.8267e-01, + 2DIAGNOSTIC, 13, -4.187300800339e-01, 2.126280428186e-06, 1.3201e+01, 6.4255e-01, + 2DIAGNOSTIC, 14, -4.187301406134e-01, 2.023376817331e-06, 1.3730e+01, 5.2947e-01, + 2DIAGNOSTIC, 15, -4.187300382427e-01, 1.969108702746e-06, 1.4245e+01, 5.1470e-01, + 2DIAGNOSTIC, 16, -4.187299200591e-01, 1.852371049271e-06, 1.4761e+01, 5.1557e-01, + 2DIAGNOSTIC, 17, -4.187296747893e-01, 1.755483364216e-06, 1.5288e+01, 5.2788e-01, + 2DIAGNOSTIC, 18, -4.187296100118e-01, 1.662992507707e-06, 1.5825e+01, 5.3655e-01, + 2DIAGNOSTIC, 19, -4.187297487356e-01, 1.587507799945e-06, 1.6436e+01, 6.1063e-01, + 2DIAGNOSTIC, 20, -4.187297996319e-01, 1.521762837554e-06, 1.7107e+01, 6.7099e-01, + 2DIAGNOSTIC, 21, -4.187295845565e-01, 1.462243208905e-06, 1.7650e+01, 5.4340e-01, + 2DIAGNOSTIC, 22, -4.187294238588e-01, 1.402797868442e-06, 1.8183e+01, 5.3323e-01, + 2DIAGNOSTIC, 23, -4.187296488917e-01, 1.348215571753e-06, 1.8843e+01, 6.5929e-01, + 2DIAGNOSTIC, 24, -4.187297385294e-01, 1.305231740661e-06, 1.9466e+01, 6.2307e-01, + 2DIAGNOSTIC, 25, -4.187296493978e-01, 1.262290158843e-06, 2.0083e+01, 6.1733e-01, + 2DIAGNOSTIC, 26, -4.187295255166e-01, 1.217808064946e-06, 2.0609e+01, 5.2609e-01, + 2DIAGNOSTIC, 27, -4.187293955465e-01, 1.168001697679e-06, 2.1079e+01, 4.7000e-01, + 2DIAGNOSTIC, 28, -4.187291303529e-01, 1.114483230889e-06, 2.1568e+01, 4.8895e-01, + 2DIAGNOSTIC, 29, -4.187290319139e-01, 1.067532774505e-06, 2.2051e+01, 4.8297e-01, + 2DIAGNOSTIC, 30, -4.187291138581e-01, 1.029658350353e-06, 2.2567e+01, 5.1633e-01, + Elapsed time (stage 0): 2.2934e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.853700423729e-01, 1.797693134862e+308, 1.7567e-01, 1.7567e-01, + 2DIAGNOSTIC, 2, -6.873425194087e-01, 1.797693134862e+308, 1.7753e-01, 1.8609e-03, + 2DIAGNOSTIC, 3, -6.900746674279e-01, 1.797693134862e+308, 1.7937e-01, 1.8420e-03, + 2DIAGNOSTIC, 4, -6.934242109542e-01, 1.797693134862e+308, 1.8119e-01, 1.8191e-03, + 2DIAGNOSTIC, 5, -6.965859675016e-01, 1.797693134862e+308, 1.8305e-01, 1.8539e-03, + 2DIAGNOSTIC, 6, -6.986723193726e-01, 1.797693134862e+308, 1.8518e-01, 2.1381e-03, + 2DIAGNOSTIC, 7, -6.996796954565e-01, 1.797693134862e+308, 1.8918e-01, 3.9980e-03, + 2DIAGNOSTIC, 8, -6.996842437472e-01, 1.797693134862e+308, 1.9110e-01, 1.9219e-03, + 2DIAGNOSTIC, 9, -6.997024142343e-01, 1.797693134862e+308, 1.9298e-01, 1.8761e-03, + 2DIAGNOSTIC, 10, -6.997317891997e-01, 1.441418641895e-03, 1.9507e-01, 2.0919e-03, + 2DIAGNOSTIC, 11, -6.997752977606e-01, 1.001909331989e-03, 1.9713e-01, 2.0549e-03, + 2DIAGNOSTIC, 12, -6.998353407473e-01, 6.153152881236e-04, 1.9926e-01, 2.1279e-03, + 2DIAGNOSTIC, 13, -6.999124653587e-01, 3.205482630612e-04, 2.0137e-01, 2.1129e-03, + 2DIAGNOSTIC, 14, -6.999939917780e-01, 1.377729976414e-04, 2.0350e-01, 2.1291e-03, + 2DIAGNOSTIC, 15, -7.000735350854e-01, 5.394871227776e-05, 2.0562e-01, 2.1210e-03, + 2DIAGNOSTIC, 16, -7.001630108052e-01, 3.060583864095e-05, 2.0775e-01, 2.1348e-03, + 2DIAGNOSTIC, 17, -7.002770432102e-01, 3.425527834354e-05, 2.0986e-01, 2.1100e-03, + 2DIAGNOSTIC, 18, -7.004606957606e-01, 3.871910563692e-05, 2.1200e-01, 2.1350e-03, + 2DIAGNOSTIC, 19, -7.007394092886e-01, 4.557479215995e-05, 2.1440e-01, 2.3968e-03, + 2DIAGNOSTIC, 20, -7.008227701699e-01, 4.985520309700e-05, 2.1786e-01, 3.4630e-03, + 2DIAGNOSTIC, 21, -7.008648950593e-01, 5.093629488839e-05, 2.2005e-01, 2.1892e-03, + 2DIAGNOSTIC, 22, -7.008750910860e-01, 4.863290496838e-05, 2.2245e-01, 2.4040e-03, + 2DIAGNOSTIC, 23, -7.008892188989e-01, 4.368069517422e-05, 2.2509e-01, 2.6400e-03, + 2DIAGNOSTIC, 24, -7.009177346529e-01, 3.696671734981e-05, 2.2723e-01, 2.1372e-03, + 2DIAGNOSTIC, 25, -7.009319545408e-01, 2.895164298185e-05, 2.2935e-01, 2.1260e-03, + 2DIAGNOSTIC, 26, -7.009571239511e-01, 2.078791658627e-05, 2.3196e-01, 2.6031e-03, + 2DIAGNOSTIC, 27, -7.009832920269e-01, 1.348648808867e-05, 2.3432e-01, 2.3580e-03, + 2DIAGNOSTIC, 28, -7.009918553636e-01, 8.240718057877e-06, 2.3642e-01, 2.1000e-03, + 2DIAGNOSTIC, 29, -7.009988159128e-01, 6.669161923115e-06, 2.3881e-01, 2.3978e-03, + 2DIAGNOSTIC, 30, -7.010036359579e-01, 5.858741824488e-06, 2.4122e-01, 2.4040e-03, + 2DIAGNOSTIC, 31, -7.011203402523e-01, 6.728690987570e-06, 2.4412e-01, 2.9058e-03, + 2DIAGNOSTIC, 32, -7.010092271957e-01, 5.676404555691e-06, 2.4728e-01, 3.1550e-03, + 2DIAGNOSTIC, 33, -7.010093687500e-01, 4.471338796122e-06, 2.5019e-01, 2.9120e-03, + 2DIAGNOSTIC, 34, -7.010093842293e-01, 3.354424016114e-06, 2.5368e-01, 3.4940e-03, + 2DIAGNOSTIC, 35, -7.010093854684e-01, 2.206666413228e-06, 2.5720e-01, 3.5150e-03, + 2DIAGNOSTIC, 36, -7.010093855616e-01, 1.260207285091e-06, 2.6039e-01, 3.1941e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.751051888776e-01, 1.797693134862e+308, 4.6313e-01, 2.0273e-01, + 2DIAGNOSTIC, 2, -5.760111891729e-01, 1.797693134862e+308, 4.7698e-01, 1.3849e-02, + 2DIAGNOSTIC, 3, -5.770073117490e-01, 1.797693134862e+308, 4.9080e-01, 1.3823e-02, + 2DIAGNOSTIC, 4, -5.777740373860e-01, 1.797693134862e+308, 5.0536e-01, 1.4560e-02, + 2DIAGNOSTIC, 5, -5.783167433296e-01, 1.797693134862e+308, 5.2136e-01, 1.6003e-02, + 2DIAGNOSTIC, 6, -5.789828724341e-01, 1.797693134862e+308, 5.3751e-01, 1.6149e-02, + 2DIAGNOSTIC, 7, -5.790958000325e-01, 1.797693134862e+308, 5.5335e-01, 1.5839e-02, + 2DIAGNOSTIC, 8, -5.791607600683e-01, 1.797693134862e+308, 5.6893e-01, 1.5576e-02, + 2DIAGNOSTIC, 9, -5.791877244360e-01, 1.797693134862e+308, 5.8306e-01, 1.4132e-02, + 2DIAGNOSTIC, 10, -5.791907280988e-01, 4.506381296331e-04, 5.9605e-01, 1.2988e-02, + 2DIAGNOSTIC, 11, -5.792685781345e-01, 2.965328627813e-04, 6.0973e-01, 1.3685e-02, + 2DIAGNOSTIC, 12, -5.793163990354e-01, 1.802132299685e-04, 6.2557e-01, 1.5840e-02, + 2DIAGNOSTIC, 13, -5.795618469615e-01, 1.124763427621e-04, 6.4909e-01, 2.3519e-02, + 2DIAGNOSTIC, 14, -5.795990012177e-01, 7.225204649090e-05, 6.6309e-01, 1.4003e-02, + 2DIAGNOSTIC, 15, -5.796087141647e-01, 4.863414893119e-05, 6.7891e-01, 1.5819e-02, + 2DIAGNOSTIC, 16, -5.796097650230e-01, 4.421372405904e-05, 6.9655e-01, 1.7637e-02, + 2DIAGNOSTIC, 17, -5.796006789684e-01, 3.934656605667e-05, 7.1321e-01, 1.6661e-02, + 2DIAGNOSTIC, 18, -5.795754520693e-01, 3.254857096170e-05, 7.2758e-01, 1.4366e-02, + 2DIAGNOSTIC, 19, -5.795791674468e-01, 2.442575168741e-05, 7.4182e-01, 1.4246e-02, + 2DIAGNOSTIC, 20, -5.795843711190e-01, 1.524047421241e-05, 7.5992e-01, 1.8095e-02, + 2DIAGNOSTIC, 21, -5.795860137989e-01, 7.557422852328e-06, 7.7417e-01, 1.4254e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.833824838238e-01, 1.797693134862e+308, 1.1517e+00, 3.7751e-01, + 2DIAGNOSTIC, 2, -4.841662331971e-01, 1.797693134862e+308, 1.2538e+00, 1.0212e-01, + 2DIAGNOSTIC, 3, -4.847885136703e-01, 1.797693134862e+308, 1.3556e+00, 1.0180e-01, + 2DIAGNOSTIC, 4, -4.850544011462e-01, 1.797693134862e+308, 1.4582e+00, 1.0260e-01, + 2DIAGNOSTIC, 5, -4.851422958444e-01, 1.797693134862e+308, 1.5616e+00, 1.0343e-01, + 2DIAGNOSTIC, 6, -4.852527363913e-01, 1.797693134862e+308, 1.6624e+00, 1.0073e-01, + 2DIAGNOSTIC, 7, -4.854487177065e-01, 1.797693134862e+308, 1.8060e+00, 1.4367e-01, + 2DIAGNOSTIC, 8, -4.854642641275e-01, 1.797693134862e+308, 1.9092e+00, 1.0315e-01, + 2DIAGNOSTIC, 9, -4.854802750339e-01, 1.797693134862e+308, 2.0256e+00, 1.1645e-01, + 2DIAGNOSTIC, 10, -4.855293825090e-01, 2.359322041060e-04, 2.1277e+00, 1.0210e-01, + 2DIAGNOSTIC, 11, -4.855645980005e-01, 1.375215958675e-04, 2.2452e+00, 1.1747e-01, + 2DIAGNOSTIC, 12, -4.855685076161e-01, 8.108097381530e-05, 2.4191e+00, 1.7390e-01, + 2DIAGNOSTIC, 13, -4.855731511884e-01, 5.429217756921e-05, 2.5484e+00, 1.2931e-01, + 2DIAGNOSTIC, 14, -4.855740660333e-01, 3.787253238390e-05, 2.6632e+00, 1.1481e-01, + 2DIAGNOSTIC, 15, -4.855745273245e-01, 2.378708859385e-05, 2.7786e+00, 1.1533e-01, + 2DIAGNOSTIC, 16, -4.855740229723e-01, 1.328619924963e-05, 2.8827e+00, 1.0419e-01, + 2DIAGNOSTIC, 17, -4.855739652442e-01, 9.744913887881e-06, 2.9996e+00, 1.1689e-01, + 2DIAGNOSTIC, 18, -4.855736704224e-01, 6.386409767634e-06, 3.1019e+00, 1.0228e-01, + 2DIAGNOSTIC, 19, -4.855737759004e-01, 3.421104982505e-06, 3.2190e+00, 1.1711e-01, + 2DIAGNOSTIC, 20, -4.855745891804e-01, 2.025683001700e-06, 3.3361e+00, 1.1703e-01, + 2DIAGNOSTIC, 21, -4.855758237844e-01, 1.737620050228e-06, 3.5081e+00, 1.7207e-01, + 2DIAGNOSTIC, 22, -4.855755546693e-01, 1.548367594480e-06, 3.6272e+00, 1.1911e-01, + 2DIAGNOSTIC, 23, -4.855756637626e-01, 1.487381572685e-06, 3.7304e+00, 1.0314e-01, + 2DIAGNOSTIC, 24, -4.855756887548e-01, 1.444453155905e-06, 3.8321e+00, 1.0167e-01, + 2DIAGNOSTIC, 25, -4.855757269606e-01, 1.405229588691e-06, 3.9427e+00, 1.1067e-01, + 2DIAGNOSTIC, 26, -4.855757590141e-01, 1.345457329750e-06, 4.0494e+00, 1.0668e-01, + 2DIAGNOSTIC, 27, -4.855744149889e-01, 1.248765554157e-06, 4.1475e+00, 9.8079e-02, + 2DIAGNOSTIC, 28, -4.855717079021e-01, 1.090965778792e-06, 4.2434e+00, 9.5867e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.184544422918e-01, 1.797693134862e+308, 5.4640e+00, 1.2207e+00, + 2DIAGNOSTIC, 2, -4.188208330193e-01, 1.797693134862e+308, 6.0887e+00, 6.2471e-01, + 2DIAGNOSTIC, 3, -4.190260434545e-01, 1.797693134862e+308, 6.6300e+00, 5.4128e-01, + 2DIAGNOSTIC, 4, -4.191123451394e-01, 1.797693134862e+308, 7.4380e+00, 8.0796e-01, + 2DIAGNOSTIC, 5, -4.191329497728e-01, 1.797693134862e+308, 7.9987e+00, 5.6074e-01, + 2DIAGNOSTIC, 6, -4.191458803718e-01, 1.797693134862e+308, 8.5640e+00, 5.6527e-01, + 2DIAGNOSTIC, 7, -4.191750657727e-01, 1.797693134862e+308, 9.1464e+00, 5.8247e-01, + 2DIAGNOSTIC, 8, -4.192339696004e-01, 1.797693134862e+308, 9.8186e+00, 6.7219e-01, + 2DIAGNOSTIC, 9, -4.192727938777e-01, 1.797693134862e+308, 1.0721e+01, 9.0213e-01, + 2DIAGNOSTIC, 10, -4.192924157503e-01, 9.882134975213e-05, 1.1290e+01, 5.6949e-01, + 2DIAGNOSTIC, 11, -4.193082690700e-01, 5.743955691412e-05, 1.1889e+01, 5.9885e-01, + 2DIAGNOSTIC, 12, -4.193491901803e-01, 4.081022591826e-05, 1.2445e+01, 5.5555e-01, + 2DIAGNOSTIC, 13, -4.193963147093e-01, 3.625243172936e-05, 1.3025e+01, 5.8022e-01, + 2DIAGNOSTIC, 14, -4.194361370654e-01, 3.531121023370e-05, 1.3963e+01, 9.3771e-01, + 2DIAGNOSTIC, 15, -4.194394645085e-01, 3.258393243478e-05, 1.4517e+01, 5.5467e-01, + 2DIAGNOSTIC, 16, -4.194405571512e-01, 2.804799321332e-05, 1.5193e+01, 6.7623e-01, + 2DIAGNOSTIC, 17, -4.194412032800e-01, 2.279009760300e-05, 1.5948e+01, 7.5469e-01, + 2DIAGNOSTIC, 18, -4.194409075317e-01, 1.832896690920e-05, 1.6635e+01, 6.8663e-01, + 2DIAGNOSTIC, 19, -4.194407601274e-01, 1.416412898103e-05, 1.7411e+01, 7.7632e-01, + 2DIAGNOSTIC, 20, -4.194403657172e-01, 9.927824900911e-06, 1.8167e+01, 7.5563e-01, + 2DIAGNOSTIC, 21, -4.194402397904e-01, 5.826763437251e-06, 1.8852e+01, 6.8532e-01, + 2DIAGNOSTIC, 22, -4.194401063083e-01, 2.927232631067e-06, 1.9532e+01, 6.7954e-01, + 2DIAGNOSTIC, 23, -4.194398315808e-01, 1.490219506413e-06, 2.0121e+01, 5.8912e-01, + 2DIAGNOSTIC, 24, -4.194398642580e-01, 1.286928259486e-06, 2.0774e+01, 6.5368e-01, + 2DIAGNOSTIC, 25, -4.194397556817e-01, 1.190111722706e-06, 2.1395e+01, 6.2051e-01, + 2DIAGNOSTIC, 26, -4.194395258927e-01, 1.130468537523e-06, 2.1998e+01, 6.0273e-01, + 2DIAGNOSTIC, 27, -4.194396322957e-01, 1.103184867110e-06, 2.2715e+01, 7.1693e-01, + 2DIAGNOSTIC, 28, -4.194396356821e-01, 1.077757990631e-06, 2.3345e+01, 6.3009e-01, + 2DIAGNOSTIC, 29, -4.194394740430e-01, 1.052544561023e-06, 2.4030e+01, 6.8569e-01, + 2DIAGNOSTIC, 30, -4.194395329611e-01, 1.025806598248e-06, 2.4630e+01, 5.9970e-01, + 2DIAGNOSTIC, 31, -4.194394854929e-01, 1.000332491868e-06, 2.5227e+01, 5.9668e-01, + Elapsed time (stage 1): 2.5591e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.180535404836e-01, 1.797693134862e+308, 2.4956e-01, 2.4956e-01, + 1DIAGNOSTIC, 2, -9.252887432819e-01, 1.797693134862e+308, 3.4450e-01, 9.4947e-02, + 1DIAGNOSTIC, 3, -9.313086785612e-01, 1.797693134862e+308, 4.3814e-01, 9.3639e-02, + 1DIAGNOSTIC, 4, -9.364531356243e-01, 1.797693134862e+308, 5.3159e-01, 9.3448e-02, + 1DIAGNOSTIC, 5, -9.399355930524e-01, 1.797693134862e+308, 6.2736e-01, 9.5772e-02, + 1DIAGNOSTIC, 6, -9.430180917818e-01, 1.797693134862e+308, 7.2147e-01, 9.4111e-02, + 1DIAGNOSTIC, 7, -9.452791807501e-01, 1.797693134862e+308, 8.2112e-01, 9.9649e-02, + 1DIAGNOSTIC, 8, -9.472250728873e-01, 1.797693134862e+308, 9.1547e-01, 9.4346e-02, + 1DIAGNOSTIC, 9, -9.489848739020e-01, 1.797693134862e+308, 1.0149e+00, 9.9475e-02, + 1DIAGNOSTIC, 10, -9.505594844840e-01, 2.092853484384e-03, 1.1151e+00, 1.0013e-01, + 1DIAGNOSTIC, 11, -9.520260859735e-01, 1.545999466866e-03, 1.2096e+00, 9.4495e-02, + 1DIAGNOSTIC, 12, -9.532562966779e-01, 1.163488812060e-03, 1.3136e+00, 1.0404e-01, + 1DIAGNOSTIC, 13, -9.541792078872e-01, 8.947058779487e-04, 1.4074e+00, 9.3812e-02, + 1DIAGNOSTIC, 14, -9.549155381299e-01, 7.091844268968e-04, 1.5048e+00, 9.7421e-02, + 1DIAGNOSTIC, 15, -9.555197163778e-01, 5.650755799642e-04, 1.5996e+00, 9.4804e-02, + 1DIAGNOSTIC, 16, -9.560258575999e-01, 4.543100303755e-04, 1.6939e+00, 9.4292e-02, + 1DIAGNOSTIC, 17, -9.564517199538e-01, 3.620339363557e-04, 1.7888e+00, 9.4909e-02, + 1DIAGNOSTIC, 18, -9.568084221364e-01, 2.848636130474e-04, 1.8866e+00, 9.7747e-02, + 1DIAGNOSTIC, 19, -9.571129002053e-01, 2.219580631739e-04, 1.9789e+00, 9.2352e-02, + 1DIAGNOSTIC, 20, -9.573574330584e-01, 1.718821520042e-04, 2.0757e+00, 9.6790e-02, + 1DIAGNOSTIC, 21, -9.575546559434e-01, 1.342204006937e-04, 2.1762e+00, 1.0047e-01, + 1DIAGNOSTIC, 22, -9.577137879027e-01, 1.063504087847e-04, 2.2726e+00, 9.6389e-02, + 1DIAGNOSTIC, 23, -9.578756210349e-01, 8.508812808183e-05, 2.3708e+00, 9.8240e-02, + 1DIAGNOSTIC, 24, -9.579734370742e-01, 6.804423223304e-05, 2.4682e+00, 9.7393e-02, + 1DIAGNOSTIC, 25, -9.581127963149e-01, 5.492654890097e-05, 2.5617e+00, 9.3482e-02, + 1DIAGNOSTIC, 26, -9.581503355385e-01, 4.395105710554e-05, 2.6636e+00, 1.0187e-01, + 1DIAGNOSTIC, 27, -9.582940172060e-01, 3.603626114893e-05, 2.7629e+00, 9.9297e-02, + 1DIAGNOSTIC, 28, -9.582806924704e-01, 2.899245338332e-05, 2.8634e+00, 1.0051e-01, + 1DIAGNOSTIC, 29, -9.584546112821e-01, 2.472051043145e-05, 2.9611e+00, 9.7750e-02, + 1DIAGNOSTIC, 30, -9.583549146087e-01, 1.987961727697e-05, 3.0566e+00, 9.5470e-02, + 1DIAGNOSTIC, 31, -9.585904932605e-01, 1.776519162532e-05, 3.1563e+00, 9.9676e-02, + 1DIAGNOSTIC, 32, -9.583766164108e-01, 1.360572866765e-05, 3.2618e+00, 1.0547e-01, + 1DIAGNOSTIC, 33, -9.586004536299e-01, 1.204897761776e-05, 3.3635e+00, 1.0175e-01, + 1DIAGNOSTIC, 34, -9.582942941201e-01, 7.625355575615e-06, 3.4567e+00, 9.3172e-02, + 1DIAGNOSTIC, 35, -9.585458817903e-01, 6.229487179495e-06, 3.5533e+00, 9.6572e-02, + 1DIAGNOSTIC, 36, -9.582749534655e-01, 2.375944115580e-06, 3.6468e+00, 9.3526e-02, + 1DIAGNOSTIC, 37, -9.585400654838e-01, 1.957120304482e-06, 3.7490e+00, 1.0218e-01, + 1DIAGNOSTIC, 38, -9.582672536281e-01, -8.762752297907e-07, 3.8484e+00, 9.9411e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.164503992025e-01, 1.797693134862e+308, 4.6718e+00, 8.2344e-01, + 1DIAGNOSTIC, 2, -9.212120193076e-01, 1.797693134862e+308, 5.3345e+00, 6.6265e-01, + 1DIAGNOSTIC, 3, -9.252840556605e-01, 1.797693134862e+308, 5.9974e+00, 6.6293e-01, + 1DIAGNOSTIC, 4, -9.284862834529e-01, 1.797693134862e+308, 6.6600e+00, 6.6264e-01, + 1DIAGNOSTIC, 5, -9.310533388656e-01, 1.797693134862e+308, 7.3110e+00, 6.5094e-01, + 1DIAGNOSTIC, 6, -9.331869940541e-01, 1.797693134862e+308, 7.9513e+00, 6.4028e-01, + 1DIAGNOSTIC, 7, -9.350323209613e-01, 1.797693134862e+308, 8.6221e+00, 6.7087e-01, + 1DIAGNOSTIC, 8, -9.365381763156e-01, 1.797693134862e+308, 9.2829e+00, 6.6073e-01, + 1DIAGNOSTIC, 9, -9.376843436139e-01, 1.797693134862e+308, 9.9410e+00, 6.5817e-01, + 1DIAGNOSTIC, 10, -9.387284301623e-01, 1.468840659637e-03, 1.0616e+01, 6.7487e-01, + 1DIAGNOSTIC, 11, -9.395327276111e-01, 1.095803283621e-03, 1.1274e+01, 6.5829e-01, + 1DIAGNOSTIC, 12, -9.401352382484e-01, 8.219620821111e-04, 1.1935e+01, 6.6083e-01, + 1DIAGNOSTIC, 13, -9.407732104561e-01, 6.258019220010e-04, 1.2603e+01, 6.6779e-01, + 1DIAGNOSTIC, 14, -9.412649565330e-01, 4.806797732838e-04, 1.3270e+01, 6.6748e-01, + 1DIAGNOSTIC, 15, -9.417059852022e-01, 3.717104400240e-04, 1.3922e+01, 6.5199e-01, + 1DIAGNOSTIC, 16, -9.421309656403e-01, 2.906238582337e-04, 1.4570e+01, 6.4753e-01, + 1DIAGNOSTIC, 17, -9.425228432105e-01, 2.321211858544e-04, 1.5213e+01, 6.4349e-01, + 1DIAGNOSTIC, 18, -9.428898503890e-01, 1.901711604134e-04, 1.5879e+01, 6.6600e-01, + 1DIAGNOSTIC, 19, -9.432395753253e-01, 1.587869074039e-04, 1.6522e+01, 6.4285e-01, + 1DIAGNOSTIC, 20, -9.435595447797e-01, 1.364432656288e-04, 1.7172e+01, 6.4935e-01, + 1DIAGNOSTIC, 21, -9.438643413894e-01, 1.195580116614e-04, 1.7828e+01, 6.5678e-01, + 1DIAGNOSTIC, 22, -9.441539155542e-01, 1.053114372932e-04, 1.8489e+01, 6.6114e-01, + 1DIAGNOSTIC, 23, -9.444197834515e-01, 9.438147427471e-05, 1.9158e+01, 6.6869e-01, + 1DIAGNOSTIC, 24, -9.446797213229e-01, 8.503914630548e-05, 1.9821e+01, 6.6298e-01, + 1DIAGNOSTIC, 25, -9.449199645952e-01, 7.674327931752e-05, 2.0490e+01, 6.6932e-01, + 1DIAGNOSTIC, 26, -9.451407221982e-01, 6.942669334297e-05, 2.1155e+01, 6.6450e-01, + 1DIAGNOSTIC, 27, -9.453455353559e-01, 6.284597515753e-05, 2.1823e+01, 6.6850e-01, + 1DIAGNOSTIC, 28, -9.455309717392e-01, 5.682256587770e-05, 2.2495e+01, 6.7114e-01, + 1DIAGNOSTIC, 29, -9.456984709577e-01, 5.129376372920e-05, 2.3152e+01, 6.5710e-01, + 1DIAGNOSTIC, 30, -9.458529231756e-01, 4.611729033529e-05, 2.3820e+01, 6.6855e-01, + 1DIAGNOSTIC, 31, -9.459967650579e-01, 4.133765789122e-05, 2.4489e+01, 6.6898e-01, + 1DIAGNOSTIC, 32, -9.461369552739e-01, 3.705518277523e-05, 2.5150e+01, 6.6127e-01, + 1DIAGNOSTIC, 33, -9.462610788644e-01, 3.314113222878e-05, 2.5789e+01, 6.3884e-01, + 1DIAGNOSTIC, 34, -9.463766231311e-01, 2.970454351166e-05, 2.6432e+01, 6.4223e-01, + 1DIAGNOSTIC, 35, -9.464861819798e-01, 2.671888495648e-05, 2.7098e+01, 6.6650e-01, + 1DIAGNOSTIC, 36, -9.465881699608e-01, 2.412165094574e-05, 2.7763e+01, 6.6503e-01, + 1DIAGNOSTIC, 37, -9.466848527408e-01, 2.188604510237e-05, 2.8427e+01, 6.6348e-01, + 1DIAGNOSTIC, 38, -9.467692388467e-01, 1.988559473911e-05, 2.9074e+01, 6.4777e-01, + 1DIAGNOSTIC, 39, -9.468560265054e-01, 1.812163348236e-05, 2.9723e+01, 6.4864e-01, + 1DIAGNOSTIC, 40, -9.469387763529e-01, 1.656550204651e-05, 3.0377e+01, 6.5431e-01, + 1DIAGNOSTIC, 41, -9.470172545552e-01, 1.519642258758e-05, 3.1034e+01, 6.5695e-01, + 1DIAGNOSTIC, 42, -9.470920089392e-01, 1.404368939842e-05, 3.1698e+01, 6.6367e-01, + 1DIAGNOSTIC, 43, -9.471632404205e-01, 1.303173110819e-05, 3.2346e+01, 6.4772e-01, + 1DIAGNOSTIC, 44, -9.472271299393e-01, 1.210699195242e-05, 3.2982e+01, 6.3605e-01, + 1DIAGNOSTIC, 45, -9.472875362699e-01, 1.126096093340e-05, 3.3630e+01, 6.4865e-01, + 1DIAGNOSTIC, 46, -9.473447250093e-01, 1.047339490955e-05, 3.4299e+01, 6.6873e-01, + 1DIAGNOSTIC, 47, -9.473980556942e-01, 9.735703976055e-06, 3.4960e+01, 6.6096e-01, + 1DIAGNOSTIC, 48, -9.474484293483e-01, 8.997608632041e-06, 3.5641e+01, 6.8073e-01, + 1DIAGNOSTIC, 49, -9.474880854927e-01, 8.259972150527e-06, 3.6333e+01, 6.9257e-01, + 1DIAGNOSTIC, 50, -9.475328081526e-01, 7.583946035797e-06, 3.7016e+01, 6.8229e-01, + 1DIAGNOSTIC, 51, -9.475745842792e-01, 6.970345909896e-06, 3.7703e+01, 6.8689e-01, + 1DIAGNOSTIC, 52, -9.476138018116e-01, 6.423718738071e-06, 3.8377e+01, 6.7449e-01, + 1DIAGNOSTIC, 53, -9.476503662827e-01, 5.946579268432e-06, 3.9047e+01, 6.7019e-01, + 1DIAGNOSTIC, 54, -9.476852462071e-01, 5.519690653225e-06, 3.9700e+01, 6.5293e-01, + 1DIAGNOSTIC, 55, -9.477193234480e-01, 5.146828236803e-06, 4.0374e+01, 6.7390e-01, + 1DIAGNOSTIC, 56, -9.477513505193e-01, 4.822314329980e-06, 4.1040e+01, 6.6622e-01, + 1DIAGNOSTIC, 57, -9.477807697989e-01, 4.532360826225e-06, 4.1710e+01, 6.7004e-01, + 1DIAGNOSTIC, 58, -9.478087491705e-01, 4.274191911541e-06, 4.2363e+01, 6.5253e-01, + 1DIAGNOSTIC, 59, -9.478351014516e-01, 3.999351779780e-06, 4.2992e+01, 6.2967e-01, + 1DIAGNOSTIC, 60, -9.478620585179e-01, 3.756718732779e-06, 4.3638e+01, 6.4584e-01, + 1DIAGNOSTIC, 61, -9.478836886467e-01, 3.520736705096e-06, 4.4276e+01, 6.3747e-01, + 1DIAGNOSTIC, 62, -9.479090923846e-01, 3.314872008220e-06, 4.4904e+01, 6.2812e-01, + 1DIAGNOSTIC, 63, -9.479335847308e-01, 3.134403274315e-06, 4.5544e+01, 6.4031e-01, + 1DIAGNOSTIC, 64, -9.479486941140e-01, 2.938189856534e-06, 4.6212e+01, 6.6778e-01, + 1DIAGNOSTIC, 65, -9.479704874595e-01, 2.769944282954e-06, 4.6861e+01, 6.4905e-01, + 1DIAGNOSTIC, 66, -9.479931058662e-01, 2.633650442254e-06, 4.7515e+01, 6.5391e-01, + 1DIAGNOSTIC, 67, -9.480148781430e-01, 2.520944087977e-06, 4.8186e+01, 6.7082e-01, + 1DIAGNOSTIC, 68, -9.480362022353e-01, 2.430124035960e-06, 4.8842e+01, 6.5624e-01, + 1DIAGNOSTIC, 69, -9.480566748138e-01, 2.355160361060e-06, 4.9508e+01, 6.6556e-01, + 1DIAGNOSTIC, 70, -9.480765617310e-01, 2.299734988982e-06, 5.0173e+01, 6.6558e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.942048072671e-01, 1.797693134862e+308, 5.5792e+01, 5.6193e+00, + 1DIAGNOSTIC, 2, -8.982114985321e-01, 1.797693134862e+308, 6.1100e+01, 5.3077e+00, + 1DIAGNOSTIC, 3, -9.019007395975e-01, 1.797693134862e+308, 6.6466e+01, 5.3660e+00, + 1DIAGNOSTIC, 4, -9.056801213879e-01, 1.797693134862e+308, 7.1817e+01, 5.3505e+00, + 1DIAGNOSTIC, 5, -9.083805478919e-01, 1.797693134862e+308, 7.7146e+01, 5.3288e+00, + 1DIAGNOSTIC, 6, -9.108869626880e-01, 1.797693134862e+308, 8.2482e+01, 5.3365e+00, + 1DIAGNOSTIC, 7, -9.131837617157e-01, 1.797693134862e+308, 8.7798e+01, 5.3157e+00, + 1DIAGNOSTIC, 8, -9.152243035133e-01, 1.797693134862e+308, 9.3131e+01, 5.3332e+00, + 1DIAGNOSTIC, 9, -9.169617709553e-01, 1.797693134862e+308, 9.8499e+01, 5.3685e+00, + 1DIAGNOSTIC, 10, -9.184275701132e-01, 1.688936361132e-03, 1.0379e+02, 5.2940e+00, + 1DIAGNOSTIC, 11, -9.194220131932e-01, 1.342440490397e-03, 1.0917e+02, 5.3726e+00, + 1DIAGNOSTIC, 12, -9.205454060487e-01, 1.066252185177e-03, 1.1456e+02, 5.3898e+00, + 1DIAGNOSTIC, 13, -9.212855351851e-01, 8.413490292786e-04, 1.1997e+02, 5.4127e+00, + 1DIAGNOSTIC, 14, -9.220955466139e-01, 6.739360098412e-04, 1.2531e+02, 5.3414e+00, + 1DIAGNOSTIC, 15, -9.227274429233e-01, 5.361005081276e-04, 1.3075e+02, 5.4355e+00, + 1DIAGNOSTIC, 16, -9.234633781172e-01, 4.290917377246e-04, 1.3611e+02, 5.3648e+00, + 1DIAGNOSTIC, 17, -9.240345528621e-01, 3.472441593138e-04, 1.4147e+02, 5.3575e+00, + 1DIAGNOSTIC, 18, -9.245705779255e-01, 2.866111210485e-04, 1.4683e+02, 5.3610e+00, + 1DIAGNOSTIC, 19, -9.250818899519e-01, 2.423608312102e-04, 1.5220e+02, 5.3716e+00, + 1DIAGNOSTIC, 20, -9.255767907364e-01, 2.103726600278e-04, 1.5762e+02, 5.4192e+00, + 1DIAGNOSTIC, 21, -9.260445598881e-01, 1.832340763762e-04, 1.6299e+02, 5.3703e+00, + 1DIAGNOSTIC, 22, -9.264854388440e-01, 1.634690465578e-04, 1.6837e+02, 5.3757e+00, + 1DIAGNOSTIC, 23, -9.269055167005e-01, 1.457103703790e-04, 1.7371e+02, 5.3429e+00, + 1DIAGNOSTIC, 24, -9.273100134958e-01, 1.314506703289e-04, 1.7904e+02, 5.3347e+00, + 1DIAGNOSTIC, 25, -9.276807966853e-01, 1.183396686750e-04, 1.8440e+02, 5.3534e+00, + 1DIAGNOSTIC, 26, -9.280186613712e-01, 1.078829292311e-04, 1.8977e+02, 5.3727e+00, + 1DIAGNOSTIC, 27, -9.283358666486e-01, 9.822537445014e-05, 1.9516e+02, 5.3916e+00, + 1DIAGNOSTIC, 28, -9.286318275711e-01, 8.919041523123e-05, 2.0053e+02, 5.3657e+00, + 1DIAGNOSTIC, 29, -9.289158354590e-01, 8.084074150361e-05, 2.0590e+02, 5.3765e+00, + 1DIAGNOSTIC, 30, -9.291948585935e-01, 7.338884864602e-05, 2.1126e+02, 5.3526e+00, + 1DIAGNOSTIC, 31, -9.294723522968e-01, 6.691588355309e-05, 2.1663e+02, 5.3747e+00, + 1DIAGNOSTIC, 32, -9.297461874713e-01, 6.142306937325e-05, 2.2197e+02, 5.3384e+00, + 1DIAGNOSTIC, 33, -9.300196550851e-01, 5.694295428047e-05, 2.2733e+02, 5.3590e+00, + 1DIAGNOSTIC, 34, -9.302871471655e-01, 5.344081104843e-05, 2.3271e+02, 5.3833e+00, + 1DIAGNOSTIC, 35, -9.305337680433e-01, 5.052809087634e-05, 2.3808e+02, 5.3657e+00, + 1DIAGNOSTIC, 36, -9.307598976553e-01, 4.783411390981e-05, 2.4341e+02, 5.3342e+00, + 1DIAGNOSTIC, 37, -9.309696714925e-01, 4.515974514631e-05, 2.4879e+02, 5.3837e+00, + 1DIAGNOSTIC, 38, -9.311612833052e-01, 4.231559113601e-05, 2.5415e+02, 5.3510e+00, + 1DIAGNOSTIC, 39, -9.313427794336e-01, 3.929899053426e-05, 2.5952e+02, 5.3692e+00, + 1DIAGNOSTIC, 40, -9.315172244553e-01, 3.621541576290e-05, 2.6489e+02, 5.3718e+00, + 1DIAGNOSTIC, 41, -9.316793656422e-01, 3.316752823204e-05, 2.7027e+02, 5.3856e+00, + 1DIAGNOSTIC, 42, -9.318337066138e-01, 3.027549047989e-05, 2.7565e+02, 5.3756e+00, + 1DIAGNOSTIC, 43, -9.319818482502e-01, 2.768108237558e-05, 2.8097e+02, 5.3177e+00, + 1DIAGNOSTIC, 44, -9.321243296556e-01, 2.546409516203e-05, 2.8629e+02, 5.3280e+00, + 1DIAGNOSTIC, 45, -9.322608454623e-01, 2.356864038599e-05, 2.9168e+02, 5.3905e+00, + 1DIAGNOSTIC, 46, -9.323917670047e-01, 2.192811611200e-05, 2.9706e+02, 5.3773e+00, + 1DIAGNOSTIC, 47, -9.325147100534e-01, 2.047751232260e-05, 3.0241e+02, 5.3457e+00, + 1DIAGNOSTIC, 48, -9.326380000970e-01, 1.918595338278e-05, 3.0776e+02, 5.3544e+00, + 1DIAGNOSTIC, 49, -9.327572868589e-01, 1.803669338519e-05, 3.1313e+02, 5.3706e+00, + 1DIAGNOSTIC, 50, -9.328729085700e-01, 1.702929013354e-05, 3.1850e+02, 5.3691e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.964221536423e-01, 1.797693134862e+308, 3.6247e+02, 4.3974e+01, + 1DIAGNOSTIC, 2, -8.983933764237e-01, 1.797693134862e+308, 4.0577e+02, 4.3295e+01, + 1DIAGNOSTIC, 3, -9.003937141861e-01, 1.797693134862e+308, 4.4916e+02, 4.3395e+01, + 1DIAGNOSTIC, 4, -9.023181026148e-01, 1.797693134862e+308, 4.9277e+02, 4.3605e+01, + 1DIAGNOSTIC, 5, -9.040674733457e-01, 1.797693134862e+308, 5.3601e+02, 4.3244e+01, + 1DIAGNOSTIC, 6, -9.056266496119e-01, 1.797693134862e+308, 5.7924e+02, 4.3224e+01, + 1DIAGNOSTIC, 7, -9.069859811163e-01, 1.797693134862e+308, 6.2268e+02, 4.3437e+01, + 1DIAGNOSTIC, 8, -9.081472646295e-01, 1.797693134862e+308, 6.6607e+02, 4.3393e+01, + 1DIAGNOSTIC, 9, -9.091323681549e-01, 1.797693134862e+308, 7.0943e+02, 4.3357e+01, + 1DIAGNOSTIC, 10, -9.098335335466e-01, 9.673961879567e-04, 7.5269e+02, 4.3259e+01, + 1DIAGNOSTIC, 11, -9.104107011039e-01, 7.790573026413e-04, 7.9605e+02, 4.3370e+01, + 1DIAGNOSTIC, 12, -9.108974142792e-01, 6.162120253727e-04, 8.3970e+02, 4.3647e+01, + 1DIAGNOSTIC, 13, -9.113172716781e-01, 4.808120339121e-04, 8.8342e+02, 4.3716e+01, + 1DIAGNOSTIC, 14, -9.115816966451e-01, 3.698075077652e-04, 9.2690e+02, 4.3485e+01, + 1DIAGNOSTIC, 15, -9.118069865377e-01, 2.809650674788e-04, 9.7038e+02, 4.3475e+01, + 1DIAGNOSTIC, 16, -9.120002456188e-01, 2.116706447261e-04, 1.0140e+03, 4.3599e+01, + 1DIAGNOSTIC, 17, -9.121670066010e-01, 1.590225958605e-04, 1.0575e+03, 4.3543e+01, + 1DIAGNOSTIC, 18, -9.123105605830e-01, 1.201141779538e-04, 1.1010e+03, 4.3463e+01, + 1DIAGNOSTIC, 19, -9.124442914571e-01, 9.261450350970e-05, 1.1444e+03, 4.3450e+01, + 1DIAGNOSTIC, 20, -9.125514076967e-01, 7.194445253725e-05, 1.1878e+03, 4.3366e+01, + Elapsed time (stage 2): 1188 + + +Total elapsed time: 1237 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:34:50 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:34:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:34:53 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:34:57 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:00 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23414 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:01 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:04 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23507 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:05 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:07 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:08 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23559 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:08 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23564 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:08 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:12 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:14 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:14 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:15 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:16 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:18 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:19 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:20 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:21 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:32 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:43 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC009 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:43 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC009 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:44 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC009 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:44 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24164 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:46 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:46 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24203 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:47 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:48 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC009_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 66.967 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/logs/proc_func_19-03-2024-7253.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:53 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC009 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/QC/sub-PNC009_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC009* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 67.000 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC009_ses-02 +========================reprocessing without filter=================== +sub-PNC009_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC009 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC009 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC009 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC009 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:57 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:57 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz is 42.500000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:38:00 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:40:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:40:18 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 1.64 (mm) at sub-brick 1 +++ Max delta displ in automask = 0.52 (mm) at sub-brick 180 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:53:02 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:53:19 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz is 42.500000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:55:29 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:57:36 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz is 42.500000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:59:46 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.163 -3.511 1.291 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.7 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.264 -5.096 1.798 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.9 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:04:29 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:04:58 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x559015dd2a50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [105.102, 46.6814, -128.214] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559015c49730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x559015de9350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x559015dd9600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [72.8093, 118.5, -134.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559015ddbe40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5590165e5f50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5590165e4270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [105.102, 46.6814, -128.214] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559015dd8640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5590171101c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5590165e3a00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [72.8093, 118.5, -134.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559015ddf450) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55901790a300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.347385092423e-01, 1.797693134862e+308, 3.9950e-02, 3.9950e-02, + 2DIAGNOSTIC, 2, -6.369527694073e-01, 1.797693134862e+308, 4.1644e-02, 1.6940e-03, + 2DIAGNOSTIC, 3, -6.391020174340e-01, 1.797693134862e+308, 4.3435e-02, 1.7910e-03, + 2DIAGNOSTIC, 4, -6.396235346310e-01, 1.797693134862e+308, 4.4670e-02, 1.2350e-03, + 2DIAGNOSTIC, 5, -6.409686063277e-01, 1.797693134862e+308, 4.5924e-02, 1.2541e-03, + 2DIAGNOSTIC, 6, -6.417291464970e-01, 1.797693134862e+308, 4.7290e-02, 1.3661e-03, + 2DIAGNOSTIC, 7, -6.421004087841e-01, 1.797693134862e+308, 4.9275e-02, 1.9848e-03, + 2DIAGNOSTIC, 8, -6.423069518681e-01, 1.797693134862e+308, 5.0531e-02, 1.2560e-03, + 2DIAGNOSTIC, 9, -6.425471228926e-01, 1.797693134862e+308, 5.2050e-02, 1.5190e-03, + 2DIAGNOSTIC, 10, -6.426887699695e-01, 7.298063298672e-04, 5.3983e-02, 1.9329e-03, + 2DIAGNOSTIC, 11, -6.427318803851e-01, 4.729074152708e-04, 5.5707e-02, 1.7240e-03, + 2DIAGNOSTIC, 12, -6.428820974071e-01, 3.027939315246e-04, 5.7419e-02, 1.7118e-03, + 2DIAGNOSTIC, 13, -6.432501286735e-01, 2.179243213599e-04, 5.8922e-02, 1.5030e-03, + 2DIAGNOSTIC, 14, -6.435371382530e-01, 1.500904622660e-04, 6.0656e-02, 1.7340e-03, + 2DIAGNOSTIC, 15, -6.436329750173e-01, 1.198628842119e-04, 6.2875e-02, 2.2190e-03, + 2DIAGNOSTIC, 16, -6.436509590683e-01, 1.042113219278e-04, 6.4407e-02, 1.5318e-03, + 2DIAGNOSTIC, 17, -6.438058901765e-01, 9.472341313566e-05, 6.5892e-02, 1.4858e-03, + 2DIAGNOSTIC, 18, -6.438623191855e-01, 8.381948765081e-05, 6.7418e-02, 1.5252e-03, + 2DIAGNOSTIC, 19, -6.441965614427e-01, 7.968476673213e-05, 6.8897e-02, 1.4799e-03, + 2DIAGNOSTIC, 20, -6.452491087938e-01, 9.508906627044e-05, 7.0620e-02, 1.7221e-03, + 2DIAGNOSTIC, 21, -6.485921380686e-01, 1.711787380278e-04, 7.2828e-02, 2.2080e-03, + 2DIAGNOSTIC, 22, -6.492491129514e-01, 2.389424830234e-04, 7.4313e-02, 1.4851e-03, + 2DIAGNOSTIC, 23, -6.499842218949e-01, 3.002918774177e-04, 7.5954e-02, 1.6410e-03, + 2DIAGNOSTIC, 24, -6.509725576916e-01, 3.525069558584e-04, 7.7418e-02, 1.4639e-03, + 2DIAGNOSTIC, 25, -6.570555634559e-01, 4.758270375101e-04, 7.9153e-02, 1.7350e-03, + 2DIAGNOSTIC, 26, -6.971627748178e-01, 1.219082114327e-03, 8.0833e-02, 1.6801e-03, + 2DIAGNOSTIC, 27, -7.593268851295e-01, 2.774203143006e-03, 8.3471e-02, 2.6381e-03, + 2DIAGNOSTIC, 28, -7.460597896609e-01, 3.720073714307e-03, 8.4963e-02, 1.4920e-03, + 2DIAGNOSTIC, 29, -7.538676703424e-01, 4.388306015619e-03, 8.6435e-02, 1.4720e-03, + 2DIAGNOSTIC, 30, -7.646951694696e-01, 4.765004554991e-03, 8.7950e-02, 1.5149e-03, + 2DIAGNOSTIC, 31, -7.674526919546e-01, 4.729891691622e-03, 8.9408e-02, 1.4579e-03, + 2DIAGNOSTIC, 32, -7.717715321303e-01, 4.305030673116e-03, 9.0876e-02, 1.4679e-03, + 2DIAGNOSTIC, 33, -7.760341051847e-01, 3.576584363682e-03, 9.2594e-02, 1.7180e-03, + 2DIAGNOSTIC, 34, -7.796368896182e-01, 2.630734477905e-03, 9.4517e-02, 1.9231e-03, + 2DIAGNOSTIC, 35, -7.820370493303e-01, 1.590141800358e-03, 9.6287e-02, 1.7700e-03, + 2DIAGNOSTIC, 36, -7.831643616375e-01, 9.225794321094e-04, 9.7944e-02, 1.6570e-03, + 2DIAGNOSTIC, 37, -7.833988370867e-01, 9.179668820606e-04, 9.9403e-02, 1.4589e-03, + 2DIAGNOSTIC, 38, -7.840413947172e-01, 6.877107869364e-04, 1.0111e-01, 1.7121e-03, + 2DIAGNOSTIC, 39, -7.846805082757e-01, 4.921039612178e-04, 1.0259e-01, 1.4760e-03, + 2DIAGNOSTIC, 40, -7.885766860276e-01, 4.121869770011e-04, 1.0573e-01, 3.1371e-03, + 2DIAGNOSTIC, 41, -7.895658173835e-01, 3.337094141432e-04, 1.0719e-01, 1.4589e-03, + 2DIAGNOSTIC, 42, -7.901514866497e-01, 2.753314532023e-04, 1.0866e-01, 1.4770e-03, + 2DIAGNOSTIC, 43, -7.907954360834e-01, 2.402785316600e-04, 1.1012e-01, 1.4529e-03, + 2DIAGNOSTIC, 44, -7.910496472959e-01, 2.191330648053e-04, 1.1161e-01, 1.4939e-03, + 2DIAGNOSTIC, 45, -7.911977716775e-01, 2.004401958093e-04, 1.1308e-01, 1.4670e-03, + 2DIAGNOSTIC, 46, -7.923160118187e-01, 1.832131418759e-04, 1.1477e-01, 1.6959e-03, + 2DIAGNOSTIC, 47, -7.940755852402e-01, 1.665671650397e-04, 1.1697e-01, 2.1932e-03, + 2DIAGNOSTIC, 48, -7.943916928465e-01, 1.428538848251e-04, 1.1869e-01, 1.7278e-03, + 2DIAGNOSTIC, 49, -7.945674482034e-01, 1.127577366392e-04, 1.2021e-01, 1.5140e-03, + 2DIAGNOSTIC, 50, -7.945857789484e-01, 1.046698248680e-04, 1.2168e-01, 1.4679e-03, + 2DIAGNOSTIC, 51, -7.946747321832e-01, 9.523264100673e-05, 1.2317e-01, 1.4980e-03, + 2DIAGNOSTIC, 52, -7.951424257966e-01, 8.484831868589e-05, 1.2485e-01, 1.6751e-03, + 2DIAGNOSTIC, 53, -7.956352961342e-01, 7.526838155538e-05, 1.2794e-01, 3.0930e-03, + 2DIAGNOSTIC, 54, -7.956389107649e-01, 6.102333776145e-05, 1.2940e-01, 1.4620e-03, + 2DIAGNOSTIC, 55, -7.956603215831e-01, 4.283141343542e-05, 1.3089e-01, 1.4849e-03, + 2DIAGNOSTIC, 56, -7.956776875520e-01, 2.903879979765e-05, 1.3239e-01, 1.5032e-03, + 2DIAGNOSTIC, 57, -7.956889139491e-01, 2.518082047357e-05, 1.3384e-01, 1.4451e-03, + 2DIAGNOSTIC, 58, -7.957022332784e-01, 2.125681359428e-05, 1.3529e-01, 1.4501e-03, + 2DIAGNOSTIC, 59, -7.957316586311e-01, 1.690360022113e-05, 1.3675e-01, 1.4591e-03, + 2DIAGNOSTIC, 60, -7.957770740033e-01, 1.162649962697e-05, 1.3822e-01, 1.4732e-03, + 2DIAGNOSTIC, 61, -7.959099277664e-01, 6.846468487139e-06, 1.4040e-01, 2.1770e-03, + 2DIAGNOSTIC, 62, -7.959247843958e-01, 4.568010510363e-06, 1.4678e-01, 6.3829e-03, + 2DIAGNOSTIC, 63, -7.959247842204e-01, 5.048688700555e-06, 1.5269e-01, 5.9102e-03, + 2DIAGNOSTIC, 64, -7.959247842204e-01, 5.111173262531e-06, 1.5442e-01, 1.7331e-03, + 2DIAGNOSTIC, 65, -7.959247842204e-01, 4.852669090036e-06, 1.5670e-01, 2.2759e-03, + 2DIAGNOSTIC, 66, -7.959247842204e-01, 4.276753095452e-06, 1.5913e-01, 2.4302e-03, + 2DIAGNOSTIC, 67, -7.959247842204e-01, 3.423262776924e-06, 1.6140e-01, 2.2740e-03, + 2DIAGNOSTIC, 68, -7.959247842204e-01, 2.403446587886e-06, 1.6398e-01, 2.5740e-03, + 2DIAGNOSTIC, 69, -7.959247842204e-01, 1.401287219580e-06, 1.6598e-01, 2.0010e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.785299207208e-01, 1.797693134862e+308, 2.1179e-01, 4.5810e-02, + 2DIAGNOSTIC, 2, -3.774689723287e-01, 1.797693134862e+308, 2.1432e-01, 2.5270e-03, + 2DIAGNOSTIC, 3, -3.790668651084e-01, 1.797693134862e+308, 2.1682e-01, 2.5060e-03, + 2DIAGNOSTIC, 4, -3.799217713530e-01, 1.797693134862e+308, 2.1925e-01, 2.4290e-03, + 2DIAGNOSTIC, 5, -3.805676828557e-01, 1.797693134862e+308, 2.2148e-01, 2.2299e-03, + 2DIAGNOSTIC, 6, -3.814987533998e-01, 1.797693134862e+308, 2.2366e-01, 2.1820e-03, + 2DIAGNOSTIC, 7, -3.871116009268e-01, 1.797693134862e+308, 2.2581e-01, 2.1498e-03, + 2DIAGNOSTIC, 8, -3.914153137841e-01, 1.797693134862e+308, 2.2797e-01, 2.1541e-03, + 2DIAGNOSTIC, 9, -3.954313148165e-01, 1.797693134862e+308, 2.3105e-01, 3.0868e-03, + 2DIAGNOSTIC, 10, -4.077189223306e-01, 4.205899319283e-03, 2.3415e-01, 3.0971e-03, + 2DIAGNOSTIC, 11, -4.092602597620e-01, 4.910786073304e-03, 2.3663e-01, 2.4841e-03, + 2DIAGNOSTIC, 12, -4.114131914217e-01, 5.120081670987e-03, 2.3913e-01, 2.4970e-03, + 2DIAGNOSTIC, 13, -4.153308528037e-01, 5.142024924017e-03, 2.4163e-01, 2.4960e-03, + 2DIAGNOSTIC, 14, -4.287113777832e-01, 5.411416490987e-03, 2.4416e-01, 2.5280e-03, + 2DIAGNOSTIC, 15, -4.940186246556e-01, 8.190309053097e-03, 2.4733e-01, 3.1762e-03, + 2DIAGNOSTIC, 16, -5.488956005194e-01, 1.206440526410e-02, 2.5112e-01, 3.7930e-03, + 2DIAGNOSTIC, 17, -5.504928699266e-01, 1.451686916097e-02, 2.5362e-01, 2.4970e-03, + 2DIAGNOSTIC, 18, -5.546964027524e-01, 1.566591018128e-02, 2.5611e-01, 2.4869e-03, + 2DIAGNOSTIC, 19, -5.976704823490e-01, 1.676725921613e-02, 2.5866e-01, 2.5520e-03, + 2DIAGNOSTIC, 20, -6.230597101549e-01, 1.726995122891e-02, 2.6140e-01, 2.7421e-03, + 2DIAGNOSTIC, 21, -6.265222259812e-01, 1.623864595907e-02, 2.6431e-01, 2.9030e-03, + 2DIAGNOSTIC, 22, -6.282257276329e-01, 1.399993575886e-02, 2.6775e-01, 3.4451e-03, + 2DIAGNOSTIC, 23, -6.284569277343e-01, 1.088076928307e-02, 2.7000e-01, 2.2540e-03, + 2DIAGNOSTIC, 24, -6.296439461111e-01, 7.413563063330e-03, 2.7249e-01, 2.4900e-03, + 2DIAGNOSTIC, 25, -6.301151790084e-01, 5.125896558011e-03, 2.7469e-01, 2.1939e-03, + 2DIAGNOSTIC, 26, -6.306825809217e-01, 3.845909403665e-03, 2.7749e-01, 2.8031e-03, + 2DIAGNOSTIC, 27, -6.313440303356e-01, 2.393936427151e-03, 2.7993e-01, 2.4369e-03, + 2DIAGNOSTIC, 28, -6.321921746636e-01, 9.350617267840e-04, 2.8242e-01, 2.4920e-03, + 2DIAGNOSTIC, 29, -6.325612304023e-01, 3.480190011295e-04, 2.8487e-01, 2.4540e-03, + 2DIAGNOSTIC, 30, -6.326128011166e-01, 2.517419376952e-04, 2.8709e-01, 2.2120e-03, + 2DIAGNOSTIC, 31, -6.326542810221e-01, 2.021399542495e-04, 2.8930e-01, 2.2149e-03, + 2DIAGNOSTIC, 32, -6.326800839786e-01, 1.673922547499e-04, 2.9177e-01, 2.4660e-03, + 2DIAGNOSTIC, 33, -6.328736737718e-01, 1.260163050119e-04, 2.9404e-01, 2.2690e-03, + 2DIAGNOSTIC, 34, -6.332856781446e-01, 1.012945163982e-04, 2.9716e-01, 3.1240e-03, + 2DIAGNOSTIC, 35, -6.337504146781e-01, 8.321441136667e-05, 2.9971e-01, 2.5539e-03, + 2DIAGNOSTIC, 36, -6.337795625804e-01, 6.736989442209e-05, 3.0198e-01, 2.2681e-03, + 2DIAGNOSTIC, 37, -6.337945563432e-01, 5.593855116100e-05, 3.0421e-01, 2.2259e-03, + 2DIAGNOSTIC, 38, -6.338755097764e-01, 5.295764414812e-05, 3.0673e-01, 2.5210e-03, + 2DIAGNOSTIC, 39, -6.339770580687e-01, 5.147137419654e-05, 3.0902e-01, 2.2869e-03, + 2DIAGNOSTIC, 40, -6.343088727505e-01, 5.022045763402e-05, 3.1138e-01, 2.3651e-03, + 2DIAGNOSTIC, 41, -6.346806251033e-01, 4.964440658088e-05, 3.1404e-01, 2.6619e-03, + 2DIAGNOSTIC, 42, -6.350558104431e-01, 4.948069654320e-05, 3.1664e-01, 2.5928e-03, + 2DIAGNOSTIC, 43, -6.352552714265e-01, 4.936599030185e-05, 3.2105e-01, 4.4169e-03, + 2DIAGNOSTIC, 44, -6.352924689856e-01, 4.981069654049e-05, 3.2362e-01, 2.5630e-03, + 2DIAGNOSTIC, 45, -6.353714273331e-01, 5.182859076537e-05, 3.2585e-01, 2.2349e-03, + 2DIAGNOSTIC, 46, -6.353953780323e-01, 4.941695768013e-05, 3.2844e-01, 2.5890e-03, + 2DIAGNOSTIC, 47, -6.354452776188e-01, 4.315783112603e-05, 3.3077e-01, 2.3291e-03, + 2DIAGNOSTIC, 48, -6.354346664549e-01, 3.392797698306e-05, 3.3308e-01, 2.3081e-03, + 2DIAGNOSTIC, 49, -6.355415803207e-01, 2.414157576300e-05, 3.3553e-01, 2.4529e-03, + 2DIAGNOSTIC, 50, -6.356087281451e-01, 1.656173044024e-05, 3.3794e-01, 2.4111e-03, + 2DIAGNOSTIC, 51, -6.357501829167e-01, 1.282555375650e-05, 3.4036e-01, 2.4199e-03, + 2DIAGNOSTIC, 52, -6.358758051560e-01, 1.291291692649e-05, 3.4317e-01, 2.8100e-03, + 2DIAGNOSTIC, 53, -6.360394946908e-01, 1.528241117973e-05, 3.4650e-01, 3.3300e-03, + 2DIAGNOSTIC, 54, -6.360063923057e-01, 1.615480633763e-05, 3.4907e-01, 2.5721e-03, + 2DIAGNOSTIC, 55, -6.360065502460e-01, 1.625538790346e-05, 3.5149e-01, 2.4202e-03, + 2DIAGNOSTIC, 56, -6.362629055564e-01, 1.736331461658e-05, 3.5482e-01, 3.3309e-03, + 2DIAGNOSTIC, 57, -6.362987395566e-01, 1.750315859985e-05, 3.5751e-01, 2.6898e-03, + 2DIAGNOSTIC, 58, -6.364564873098e-01, 1.727822408061e-05, 3.5993e-01, 2.4109e-03, + 2DIAGNOSTIC, 59, -6.365698362654e-01, 1.734105546340e-05, 3.6291e-01, 2.9871e-03, + 2DIAGNOSTIC, 60, -6.366267022810e-01, 1.681165406180e-05, 3.6556e-01, 2.6519e-03, + 2DIAGNOSTIC, 61, -6.366759319356e-01, 1.626240173466e-05, 3.6783e-01, 2.2700e-03, + 2DIAGNOSTIC, 62, -6.367419019129e-01, 1.571041188825e-05, 3.7043e-01, 2.5930e-03, + 2DIAGNOSTIC, 63, -6.369860703902e-01, 1.694109216419e-05, 3.7364e-01, 3.2132e-03, + 2DIAGNOSTIC, 64, -6.370440480594e-01, 1.671247090220e-05, 3.7624e-01, 2.5971e-03, + 2DIAGNOSTIC, 65, -6.369660558149e-01, 1.431967060747e-05, 3.7855e-01, 2.3129e-03, + 2DIAGNOSTIC, 66, -6.369522496560e-01, 1.255497344139e-05, 3.8155e-01, 3.0022e-03, + 2DIAGNOSTIC, 67, -6.370128726502e-01, 1.037027832521e-05, 3.8528e-01, 3.7251e-03, + 2DIAGNOSTIC, 68, -6.369941755554e-01, 8.244588432665e-06, 3.8777e-01, 2.4910e-03, + 2DIAGNOSTIC, 69, -6.369983193048e-01, 6.274195438912e-06, 3.9021e-01, 2.4400e-03, + 2DIAGNOSTIC, 70, -6.370827893207e-01, 4.835446021825e-06, 3.9267e-01, 2.4662e-03, + 2DIAGNOSTIC, 71, -6.372662578368e-01, 4.624089199202e-06, 3.9777e-01, 5.0981e-03, + 2DIAGNOSTIC, 72, -6.373336247366e-01, 4.839971873123e-06, 4.0020e-01, 2.4250e-03, + 2DIAGNOSTIC, 73, -6.373541669083e-01, 6.391459753612e-06, 4.0260e-01, 2.3980e-03, + 2DIAGNOSTIC, 74, -6.373891636173e-01, 7.978509124569e-06, 4.0501e-01, 2.4190e-03, + 2DIAGNOSTIC, 75, -6.374494616125e-01, 8.674479295657e-06, 4.0748e-01, 2.4631e-03, + 2DIAGNOSTIC, 76, -6.376398654990e-01, 9.646382002076e-06, 4.1082e-01, 3.3431e-03, + 2DIAGNOSTIC, 77, -6.376575449691e-01, 1.017250213640e-05, 4.1352e-01, 2.7020e-03, + 2DIAGNOSTIC, 78, -6.376299855009e-01, 9.495496789396e-06, 4.1647e-01, 2.9478e-03, + 2DIAGNOSTIC, 79, -6.376140813462e-01, 7.916917353549e-06, 4.1878e-01, 2.3060e-03, + 2DIAGNOSTIC, 80, -6.376877417620e-01, 6.582240868483e-06, 4.2106e-01, 2.2881e-03, + 2DIAGNOSTIC, 81, -6.376420238621e-01, 5.467827810291e-06, 4.2334e-01, 2.2740e-03, + 2DIAGNOSTIC, 82, -6.376048923616e-01, 4.085097669266e-06, 4.2595e-01, 2.6140e-03, + 2DIAGNOSTIC, 83, -6.376234159929e-01, 2.640713184456e-06, 4.2828e-01, 2.3301e-03, + 2DIAGNOSTIC, 84, -6.376537198688e-01, 1.388770965196e-06, 4.3131e-01, 3.0260e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.860825622597e-01, 1.797693134862e+308, 4.9235e-01, 6.1039e-02, + 2DIAGNOSTIC, 2, -4.864901941488e-01, 1.797693134862e+308, 5.0489e-01, 1.2544e-02, + 2DIAGNOSTIC, 3, -4.870310668571e-01, 1.797693134862e+308, 5.1571e-01, 1.0816e-02, + 2DIAGNOSTIC, 4, -4.875180599146e-01, 1.797693134862e+308, 5.2712e-01, 1.1407e-02, + 2DIAGNOSTIC, 5, -4.881048318322e-01, 1.797693134862e+308, 5.3826e-01, 1.1149e-02, + 2DIAGNOSTIC, 6, -4.890828340598e-01, 1.797693134862e+308, 5.5062e-01, 1.2353e-02, + 2DIAGNOSTIC, 7, -4.894041923017e-01, 1.797693134862e+308, 5.6241e-01, 1.1788e-02, + 2DIAGNOSTIC, 8, -4.902057621084e-01, 1.797693134862e+308, 5.7534e-01, 1.2935e-02, + 2DIAGNOSTIC, 9, -4.907042586066e-01, 1.797693134862e+308, 5.8820e-01, 1.2856e-02, + 2DIAGNOSTIC, 10, -4.908768691474e-01, 6.865479338835e-04, 6.0586e-01, 1.7667e-02, + 2DIAGNOSTIC, 11, -4.915934082726e-01, 6.230960493833e-04, 6.2138e-01, 1.5520e-02, + 2DIAGNOSTIC, 12, -4.917013583264e-01, 5.385619692356e-04, 6.3333e-01, 1.1943e-02, + 2DIAGNOSTIC, 13, -4.922514888629e-01, 4.674758578179e-04, 6.4521e-01, 1.1884e-02, + 2DIAGNOSTIC, 14, -4.930695556920e-01, 4.178469929539e-04, 6.5872e-01, 1.3510e-02, + 2DIAGNOSTIC, 15, -4.942374425469e-01, 4.034686119810e-04, 6.7221e-01, 1.3494e-02, + 2DIAGNOSTIC, 16, -4.944703174928e-01, 3.972955725761e-04, 6.8933e-01, 1.7114e-02, + 2DIAGNOSTIC, 17, -4.945206509204e-01, 3.681502252489e-04, 7.0161e-01, 1.2278e-02, + 2DIAGNOSTIC, 18, -4.945978858121e-01, 3.369541533011e-04, 7.1490e-01, 1.3294e-02, + 2DIAGNOSTIC, 19, -4.946658692073e-01, 2.948960356875e-04, 7.2630e-01, 1.1403e-02, + 2DIAGNOSTIC, 20, -4.947329431245e-01, 2.357858203437e-04, 7.3727e-01, 1.0971e-02, + 2DIAGNOSTIC, 21, -4.951534117157e-01, 1.920885511424e-04, 7.5224e-01, 1.4961e-02, + 2DIAGNOSTIC, 22, -4.953569255219e-01, 1.428188058099e-04, 7.7045e-01, 1.8216e-02, + 2DIAGNOSTIC, 23, -4.953611532574e-01, 9.840255320324e-05, 7.8393e-01, 1.3483e-02, + 2DIAGNOSTIC, 24, -4.954032111719e-01, 6.879701516331e-05, 7.9886e-01, 1.4930e-02, + 2DIAGNOSTIC, 25, -4.954129103530e-01, 6.232812531867e-05, 8.1303e-01, 1.4163e-02, + 2DIAGNOSTIC, 26, -4.954101141287e-01, 5.557116916887e-05, 8.2682e-01, 1.3797e-02, + 2DIAGNOSTIC, 27, -4.954125553518e-01, 4.523449803522e-05, 8.3779e-01, 1.0967e-02, + 2DIAGNOSTIC, 28, -4.954281323763e-01, 3.349914002557e-05, 8.4792e-01, 1.0129e-02, + 2DIAGNOSTIC, 29, -4.954323797230e-01, 2.106494616140e-05, 8.6077e-01, 1.2848e-02, + 2DIAGNOSTIC, 30, -4.954317618600e-01, 8.668520268942e-06, 8.7238e-01, 1.1610e-02, + 2DIAGNOSTIC, 31, -4.954339765282e-01, 4.134950055176e-06, 8.8254e-01, 1.0160e-02, + 2DIAGNOSTIC, 32, -4.954331117491e-01, 3.253613015682e-06, 8.9268e-01, 1.0139e-02, + 2DIAGNOSTIC, 33, -4.954385599586e-01, 2.357182039121e-06, 9.0290e-01, 1.0224e-02, + 2DIAGNOSTIC, 34, -4.954515005898e-01, 2.305821288164e-06, 9.1428e-01, 1.1379e-02, + 2DIAGNOSTIC, 35, -4.954546832482e-01, 2.340421606250e-06, 9.2482e-01, 1.0544e-02, + 2DIAGNOSTIC, 36, -4.954710699445e-01, 2.459982304876e-06, 9.3544e-01, 1.0614e-02, + 2DIAGNOSTIC, 37, -4.955024005947e-01, 2.939606965072e-06, 9.4605e-01, 1.0612e-02, + 2DIAGNOSTIC, 38, -4.955907018451e-01, 4.758332333526e-06, 9.5632e-01, 1.0270e-02, + 2DIAGNOSTIC, 39, -4.960756432856e-01, 1.330664943073e-05, 9.6774e-01, 1.1417e-02, + 2DIAGNOSTIC, 40, -4.960915539666e-01, 2.027546447209e-05, 9.8321e-01, 1.5475e-02, + 2DIAGNOSTIC, 41, -4.961049991698e-01, 2.535855209228e-05, 9.9477e-01, 1.1559e-02, + 2DIAGNOSTIC, 42, -4.961003685753e-01, 2.787012005090e-05, 1.0055e+00, 1.0774e-02, + 2DIAGNOSTIC, 43, -4.961521465653e-01, 2.840152708822e-05, 1.0176e+00, 1.2092e-02, + 2DIAGNOSTIC, 44, -4.961896385230e-01, 2.680377271506e-05, 1.0283e+00, 1.0623e-02, + 2DIAGNOSTIC, 45, -4.961999242247e-01, 2.293910118884e-05, 1.0403e+00, 1.2057e-02, + 2DIAGNOSTIC, 46, -4.962038851304e-01, 1.748145383457e-05, 1.0521e+00, 1.1761e-02, + 2DIAGNOSTIC, 47, -4.962029542752e-01, 1.107205737777e-05, 1.0633e+00, 1.1238e-02, + 2DIAGNOSTIC, 48, -4.962129240143e-01, 4.943368907346e-06, 1.0738e+00, 1.0468e-02, + 2DIAGNOSTIC, 49, -4.962655729852e-01, 4.953423498575e-06, 1.0847e+00, 1.0943e-02, + 2DIAGNOSTIC, 50, -4.963789165199e-01, 6.023149205853e-06, 1.0960e+00, 1.1235e-02, + 2DIAGNOSTIC, 51, -4.967651186188e-01, 1.103000920150e-05, 1.1090e+00, 1.3072e-02, + 2DIAGNOSTIC, 52, -4.968513587723e-01, 1.564061415068e-05, 1.1250e+00, 1.5917e-02, + 2DIAGNOSTIC, 53, -4.968869108439e-01, 1.961249010182e-05, 1.1351e+00, 1.0159e-02, + 2DIAGNOSTIC, 54, -4.969733716874e-01, 2.298204814697e-05, 1.1472e+00, 1.2073e-02, + 2DIAGNOSTIC, 55, -4.970269212433e-01, 2.470229864137e-05, 1.1589e+00, 1.1749e-02, + 2DIAGNOSTIC, 56, -4.970361409380e-01, 2.411576246249e-05, 1.1694e+00, 1.0437e-02, + 2DIAGNOSTIC, 57, -4.970454103649e-01, 2.138121544065e-05, 1.1811e+00, 1.1689e-02, + 2DIAGNOSTIC, 58, -4.970679843783e-01, 1.711865206767e-05, 1.1916e+00, 1.0514e-02, + 2DIAGNOSTIC, 59, -4.970976434667e-01, 1.221671227812e-05, 1.2021e+00, 1.0499e-02, + 2DIAGNOSTIC, 60, -4.971512878170e-01, 7.849400823354e-06, 1.2121e+00, 1.0040e-02, + 2DIAGNOSTIC, 61, -4.974431853181e-01, 9.294704990146e-06, 1.2235e+00, 1.1364e-02, + 2DIAGNOSTIC, 62, -4.975358633019e-01, 1.144656990574e-05, 1.2377e+00, 1.4222e-02, + 2DIAGNOSTIC, 63, -4.976039198633e-01, 1.341840556060e-05, 1.2477e+00, 9.9621e-03, + 2DIAGNOSTIC, 64, -4.976454677369e-01, 1.525135973929e-05, 1.2576e+00, 9.9759e-03, + 2DIAGNOSTIC, 65, -4.977991891829e-01, 1.743240881195e-05, 1.2691e+00, 1.1497e-02, + 2DIAGNOSTIC, 66, -4.980366948891e-01, 1.999511609948e-05, 1.2818e+00, 1.2681e-02, + 2DIAGNOSTIC, 67, -4.981690348178e-01, 2.175861034708e-05, 1.2954e+00, 1.3561e-02, + 2DIAGNOSTIC, 68, -4.981994581953e-01, 2.190467004408e-05, 1.3095e+00, 1.4096e-02, + 2DIAGNOSTIC, 69, -4.982144583942e-01, 2.040677794788e-05, 1.3238e+00, 1.4338e-02, + 2DIAGNOSTIC, 70, -4.982192482833e-01, 1.744561657566e-05, 1.3357e+00, 1.1862e-02, + 2DIAGNOSTIC, 71, -4.982142937454e-01, 1.520494214540e-05, 1.3462e+00, 1.0522e-02, + 2DIAGNOSTIC, 72, -4.982188844919e-01, 1.236576128330e-05, 1.3581e+00, 1.1869e-02, + 2DIAGNOSTIC, 73, -4.982303401088e-01, 9.106626083711e-06, 1.3692e+00, 1.1132e-02, + 2DIAGNOSTIC, 74, -4.982269536626e-01, 5.394889798576e-06, 1.3803e+00, 1.1121e-02, + 2DIAGNOSTIC, 75, -4.982407443544e-01, 2.551329438452e-06, 1.3907e+00, 1.0344e-02, + 2DIAGNOSTIC, 76, -4.982519638522e-01, 1.430945326545e-06, 1.4010e+00, 1.0316e-02, + 2DIAGNOSTIC, 77, -4.982751985879e-01, 1.395080445060e-06, 1.4116e+00, 1.0635e-02, + 2DIAGNOSTIC, 78, -4.983090185459e-01, 1.731214508877e-06, 1.4218e+00, 1.0180e-02, + 2DIAGNOSTIC, 79, -4.983851238958e-01, 2.588159593198e-06, 1.4319e+00, 1.0077e-02, + 2DIAGNOSTIC, 80, -4.984982886432e-01, 4.049597787154e-06, 1.4421e+00, 1.0201e-02, + 2DIAGNOSTIC, 81, -4.986969705660e-01, 6.479146225431e-06, 1.4599e+00, 1.7799e-02, + 2DIAGNOSTIC, 82, -4.988921413282e-01, 9.632289011593e-06, 1.4704e+00, 1.0554e-02, + 2DIAGNOSTIC, 83, -4.990325258803e-01, 1.285253479230e-05, 1.4820e+00, 1.1593e-02, + 2DIAGNOSTIC, 84, -4.994454721619e-01, 1.758620939288e-05, 1.4938e+00, 1.1752e-02, + 2DIAGNOSTIC, 85, -4.995852789128e-01, 2.151776863623e-05, 1.5054e+00, 1.1677e-02, + 2DIAGNOSTIC, 86, -4.997805707474e-01, 2.468869741005e-05, 1.5163e+00, 1.0872e-02, + 2DIAGNOSTIC, 87, -5.000004360443e-01, 2.703770676754e-05, 1.5296e+00, 1.3268e-02, + 2DIAGNOSTIC, 88, -5.002056170899e-01, 2.828581232235e-05, 1.5415e+00, 1.1944e-02, + 2DIAGNOSTIC, 89, -5.008768045704e-01, 3.158175989893e-05, 1.5534e+00, 1.1914e-02, + 2DIAGNOSTIC, 90, -5.011622514607e-01, 3.420267374821e-05, 1.5650e+00, 1.1587e-02, + 2DIAGNOSTIC, 91, -5.012911118245e-01, 3.556351983116e-05, 1.5772e+00, 1.2215e-02, + 2DIAGNOSTIC, 92, -5.014422604614e-01, 3.569961668876e-05, 1.5921e+00, 1.4837e-02, + 2DIAGNOSTIC, 93, -5.014770537435e-01, 3.341852893308e-05, 1.6027e+00, 1.0656e-02, + 2DIAGNOSTIC, 94, -5.014920857488e-01, 3.054426010628e-05, 1.6162e+00, 1.3419e-02, + 2DIAGNOSTIC, 95, -5.014992637621e-01, 2.566473945435e-05, 1.6283e+00, 1.2099e-02, + 2DIAGNOSTIC, 96, -5.015015807061e-01, 1.963879963405e-05, 1.6388e+00, 1.0526e-02, + 2DIAGNOSTIC, 97, -5.014957987162e-01, 1.315741264279e-05, 1.6489e+00, 1.0160e-02, + 2DIAGNOSTIC, 98, -5.015027295937e-01, 6.722235487167e-06, 1.6608e+00, 1.1883e-02, + 2DIAGNOSTIC, 99, -5.015206628765e-01, 3.757546568995e-06, 1.6729e+00, 1.2100e-02, + 2DIAGNOSTIC, 100, -5.015327227890e-01, 2.212281138260e-06, 1.6835e+00, 1.0623e-02, + 2DIAGNOSTIC, 101, -5.015411909687e-01, 1.272119565819e-06, 1.6941e+00, 1.0519e-02, + 2DIAGNOSTIC, 102, -5.016081056967e-01, 1.479547085164e-06, 1.7074e+00, 1.3335e-02, + 2DIAGNOSTIC, 103, -5.016327296772e-01, 1.888726514807e-06, 1.7178e+00, 1.0449e-02, + 2DIAGNOSTIC, 104, -5.016525313063e-01, 2.326684036968e-06, 1.7299e+00, 1.2039e-02, + 2DIAGNOSTIC, 105, -5.017663426319e-01, 3.222851528187e-06, 1.7498e+00, 1.9910e-02, + 2DIAGNOSTIC, 106, -5.017732932016e-01, 3.855808034667e-06, 1.7614e+00, 1.1577e-02, + 2DIAGNOSTIC, 107, -5.017718224212e-01, 4.096243723972e-06, 1.7718e+00, 1.0430e-02, + 2DIAGNOSTIC, 108, -5.017653640160e-01, 3.972200721918e-06, 1.7835e+00, 1.1693e-02, + 2DIAGNOSTIC, 109, -5.017753846395e-01, 3.642484249056e-06, 1.7952e+00, 1.1706e-02, + 2DIAGNOSTIC, 110, -5.017676035617e-01, 3.009119760358e-06, 1.8059e+00, 1.0685e-02, + 2DIAGNOSTIC, 111, -5.017738779374e-01, 2.191639910968e-06, 1.8165e+00, 1.0649e-02, + 2DIAGNOSTIC, 112, -5.017781955280e-01, 1.574896171273e-06, 1.8276e+00, 1.1067e-02, + 2DIAGNOSTIC, 113, -5.017870477439e-01, 1.017863597352e-06, 1.8383e+00, 1.0738e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.186024821544e-01, 1.797693134862e+308, 2.0184e+00, 1.8005e-01, + Elapsed time (stage 0): 2.0481e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.477362814163e-01, 1.797693134862e+308, 3.3648e-02, 3.3648e-02, + 2DIAGNOSTIC, 2, -9.514777364631e-01, 1.797693134862e+308, 3.4767e-02, 1.1189e-03, + 2DIAGNOSTIC, 3, -9.585542635248e-01, 1.797693134862e+308, 3.5876e-02, 1.1089e-03, + 2DIAGNOSTIC, 4, -9.690744452792e-01, 1.797693134862e+308, 3.6994e-02, 1.1182e-03, + 2DIAGNOSTIC, 5, -9.813570196668e-01, 1.797693134862e+308, 3.8130e-02, 1.1361e-03, + 2DIAGNOSTIC, 6, -9.990528673814e-01, 1.797693134862e+308, 3.9285e-02, 1.1549e-03, + 2DIAGNOSTIC, 7, -1.035531366028e+00, 1.797693134862e+308, 4.1070e-02, 1.7848e-03, + 2DIAGNOSTIC, 8, -1.040797962746e+00, 1.797693134862e+308, 4.2455e-02, 1.3850e-03, + 2DIAGNOSTIC, 9, -1.047364156564e+00, 1.797693134862e+308, 4.3589e-02, 1.1339e-03, + 2DIAGNOSTIC, 10, -1.058350556652e+00, 8.142378056942e-03, 4.5132e-02, 1.5430e-03, + 2DIAGNOSTIC, 11, -1.073099559742e+00, 7.647422612960e-03, 4.6674e-02, 1.5421e-03, + 2DIAGNOSTIC, 12, -1.106881617228e+00, 7.398753372721e-03, 4.9291e-02, 2.6171e-03, + 2DIAGNOSTIC, 13, -1.105308657696e+00, 6.631513021509e-03, 5.0628e-02, 1.3371e-03, + 2DIAGNOSTIC, 14, -1.109478370166e+00, 5.691634641305e-03, 5.2154e-02, 1.5259e-03, + 2DIAGNOSTIC, 15, -1.111364614946e+00, 4.632097097426e-03, 5.3499e-02, 1.3449e-03, + 2DIAGNOSTIC, 16, -1.112987931273e+00, 3.599459571908e-03, 5.4856e-02, 1.3571e-03, + 2DIAGNOSTIC, 17, -1.118379256847e+00, 3.029826655959e-03, 5.6183e-02, 1.3270e-03, + 2DIAGNOSTIC, 18, -1.123406696969e+00, 2.403282645040e-03, 5.7591e-02, 1.4081e-03, + 2DIAGNOSTIC, 19, -1.128989811650e+00, 1.802030267840e-03, 5.9206e-02, 1.6150e-03, + 2DIAGNOSTIC, 20, -1.132751835230e+00, 1.295339556940e-03, 6.0853e-02, 1.6470e-03, + 2DIAGNOSTIC, 21, -1.141329368990e+00, 1.005877700307e-03, 6.3683e-02, 2.8300e-03, + 2DIAGNOSTIC, 22, -1.141761775983e+00, 1.065656058010e-03, 6.5254e-02, 1.5709e-03, + 2DIAGNOSTIC, 23, -1.142296171568e+00, 1.008064468406e-03, 6.6846e-02, 1.5919e-03, + 2DIAGNOSTIC, 24, -1.142921678736e+00, 9.151842991468e-04, 6.8326e-02, 1.4799e-03, + 2DIAGNOSTIC, 25, -1.142658829943e+00, 7.616363165563e-04, 7.0188e-02, 1.8618e-03, + 2DIAGNOSTIC, 26, -1.144297911884e+00, 5.810093959250e-04, 7.1965e-02, 1.7779e-03, + 2DIAGNOSTIC, 27, -1.145567876570e+00, 4.241747948625e-04, 7.3505e-02, 1.5399e-03, + 2DIAGNOSTIC, 28, -1.149276207321e+00, 3.213439317301e-04, 7.4995e-02, 1.4899e-03, + 2DIAGNOSTIC, 29, -1.152910582544e+00, 2.785748697912e-04, 7.6769e-02, 1.7738e-03, + 2DIAGNOSTIC, 30, -1.154513640539e+00, 2.570680950938e-04, 7.8525e-02, 1.7560e-03, + 2DIAGNOSTIC, 31, -1.155819763592e+00, 2.964015465640e-04, 8.0020e-02, 1.4951e-03, + 2DIAGNOSTIC, 32, -1.156097694907e+00, 3.108832629359e-04, 8.1671e-02, 1.6510e-03, + 2DIAGNOSTIC, 33, -1.156235101635e+00, 3.000718988286e-04, 8.3071e-02, 1.4000e-03, + 2DIAGNOSTIC, 34, -1.156901009763e+00, 2.713573800004e-04, 8.4651e-02, 1.5800e-03, + 2DIAGNOSTIC, 35, -1.160255790951e+00, 2.413980003251e-04, 8.6895e-02, 2.2440e-03, + 2DIAGNOSTIC, 36, -1.160298235415e+00, 2.021246525214e-04, 8.8493e-02, 1.5981e-03, + 2DIAGNOSTIC, 37, -1.158430864120e+00, 1.418312528607e-04, 9.0116e-02, 1.6229e-03, + 2DIAGNOSTIC, 38, -1.157313036322e+00, 8.934295492896e-05, 9.1465e-02, 1.3492e-03, + 2DIAGNOSTIC, 39, -1.157905454574e+00, 5.894084759803e-05, 9.2826e-02, 1.3609e-03, + 2DIAGNOSTIC, 40, -1.158441087833e+00, 3.739090217955e-05, 9.4173e-02, 1.3471e-03, + 2DIAGNOSTIC, 41, -1.160252716368e+00, 3.283849797524e-05, 9.5537e-02, 1.3640e-03, + 2DIAGNOSTIC, 42, -1.160890051986e+00, 3.141532559151e-05, 9.6940e-02, 1.4021e-03, + 2DIAGNOSTIC, 43, -1.163008920088e+00, 4.094661291040e-05, 9.8269e-02, 1.3292e-03, + 2DIAGNOSTIC, 44, -1.165323377561e+00, 6.262737415620e-05, 1.0031e-01, 2.0370e-03, + 2DIAGNOSTIC, 45, -1.165705955079e+00, 9.813156004284e-05, 1.0206e-01, 1.7569e-03, + 2DIAGNOSTIC, 46, -1.165968979152e+00, 1.247732885407e-04, 1.0341e-01, 1.3459e-03, + 2DIAGNOSTIC, 47, -1.166281195394e+00, 1.302217579688e-04, 1.0476e-01, 1.3480e-03, + 2DIAGNOSTIC, 48, -1.166594303471e+00, 1.186162812849e-04, 1.0734e-01, 2.5790e-03, + 2DIAGNOSTIC, 49, -1.166736779205e+00, 9.987240117870e-05, 1.0927e-01, 1.9369e-03, + 2DIAGNOSTIC, 50, -1.167013331676e+00, 7.644210498134e-05, 1.1142e-01, 2.1482e-03, + 2DIAGNOSTIC, 51, -1.167159052174e+00, 5.666158508030e-05, 1.1380e-01, 2.3839e-03, + 2DIAGNOSTIC, 52, -1.167273377007e+00, 3.582252143068e-05, 1.1563e-01, 1.8241e-03, + 2DIAGNOSTIC, 53, -1.167420057021e+00, 2.299423421951e-05, 1.1745e-01, 1.8198e-03, + 2DIAGNOSTIC, 54, -1.167610395977e+00, 2.025271240377e-05, 1.1964e-01, 2.1920e-03, + 2DIAGNOSTIC, 55, -1.166362757405e+00, 1.171309923929e-05, 1.2099e-01, 1.3509e-03, + 2DIAGNOSTIC, 56, -1.166619462159e+00, 4.928203131974e-06, 1.2261e-01, 1.6201e-03, + 2DIAGNOSTIC, 57, -1.167020810456e+00, 1.033510588666e-06, 1.2400e-01, 1.3871e-03, + 2DIAGNOSTIC, 58, -1.171986635323e+00, 2.013374038375e-05, 1.2596e-01, 1.9650e-03, + 2DIAGNOSTIC, 59, -1.175029721748e+00, 4.974569703700e-05, 1.2756e-01, 1.6010e-03, + 2DIAGNOSTIC, 60, -1.176177459952e+00, 7.958872454047e-05, 1.2894e-01, 1.3790e-03, + 2DIAGNOSTIC, 61, -1.182680685650e+00, 1.286713265032e-04, 1.3069e-01, 1.7469e-03, + 2DIAGNOSTIC, 62, -1.183431191656e+00, 1.665914637733e-04, 1.3220e-01, 1.5130e-03, + 2DIAGNOSTIC, 63, -1.183153824336e+00, 1.866041549467e-04, 1.3353e-01, 1.3301e-03, + 2DIAGNOSTIC, 64, -1.183120950448e+00, 1.890483273779e-04, 1.3503e-01, 1.4989e-03, + 2DIAGNOSTIC, 65, -1.183969733390e+00, 1.718514081138e-04, 1.3657e-01, 1.5402e-03, + 2DIAGNOSTIC, 66, -1.184937886624e+00, 1.431892526302e-04, 1.3806e-01, 1.4870e-03, + 2DIAGNOSTIC, 67, -1.186091906953e+00, 1.069879609642e-04, 1.3957e-01, 1.5121e-03, + 2DIAGNOSTIC, 68, -1.186564778455e+00, 8.183080310280e-05, 1.4108e-01, 1.5070e-03, + 2DIAGNOSTIC, 69, -1.187661495821e+00, 6.491959759192e-05, 1.4280e-01, 1.7259e-03, + 2DIAGNOSTIC, 70, -1.187956428999e+00, 4.673366204298e-05, 1.4417e-01, 1.3700e-03, + 2DIAGNOSTIC, 71, -1.188170400447e+00, 4.820444517635e-05, 1.4571e-01, 1.5328e-03, + 2DIAGNOSTIC, 72, -1.188354213206e+00, 4.832180284470e-05, 1.4727e-01, 1.5619e-03, + 2DIAGNOSTIC, 73, -1.189495737830e+00, 4.682664862388e-05, 1.4905e-01, 1.7800e-03, + 2DIAGNOSTIC, 74, -1.189674382074e+00, 4.125222402620e-05, 1.5063e-01, 1.5841e-03, + 2DIAGNOSTIC, 75, -1.190009707795e+00, 3.582915529697e-05, 1.5204e-01, 1.4091e-03, + 2DIAGNOSTIC, 76, -1.188935938302e+00, 2.678277513165e-05, 1.5339e-01, 1.3440e-03, + 2DIAGNOSTIC, 77, -1.189095050922e+00, 1.980708804697e-05, 1.5472e-01, 1.3311e-03, + 2DIAGNOSTIC, 78, -1.189223319406e+00, 1.288867232367e-05, 1.5618e-01, 1.4591e-03, + 2DIAGNOSTIC, 79, -1.189351543673e+00, 8.719652637290e-06, 1.5778e-01, 1.6010e-03, + 2DIAGNOSTIC, 80, -1.190764283172e+00, 9.217938580934e-06, 1.5964e-01, 1.8589e-03, + 2DIAGNOSTIC, 81, -1.192121328111e+00, 1.365615444023e-05, 1.6100e-01, 1.3630e-03, + 2DIAGNOSTIC, 82, -1.192199489880e+00, 1.736404629613e-05, 1.6255e-01, 1.5512e-03, + 2DIAGNOSTIC, 83, -1.192220467967e+00, 2.287145880210e-05, 1.6389e-01, 1.3349e-03, + 2DIAGNOSTIC, 84, -1.190926201618e+00, 2.275270617232e-05, 1.6523e-01, 1.3471e-03, + 2DIAGNOSTIC, 85, -1.190940118656e+00, 2.162646620181e-05, 1.6699e-01, 1.7550e-03, + 2DIAGNOSTIC, 86, -1.190950249896e+00, 1.527243952741e-05, 1.6896e-01, 1.9732e-03, + 2DIAGNOSTIC, 87, -1.190953597345e+00, 8.075913584767e-06, 1.7031e-01, 1.3530e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.742657717010e-01, 1.797693134862e+308, 2.1474e-01, 4.4426e-02, + 2DIAGNOSTIC, 2, -7.735912571093e-01, 1.797693134862e+308, 2.1777e-01, 3.0339e-03, + 2DIAGNOSTIC, 3, -7.745475704238e-01, 1.797693134862e+308, 2.2080e-01, 3.0310e-03, + 2DIAGNOSTIC, 4, -7.757426913454e-01, 1.797693134862e+308, 2.2405e-01, 3.2430e-03, + 2DIAGNOSTIC, 5, -7.774363447666e-01, 1.797693134862e+308, 2.2680e-01, 2.7542e-03, + 2DIAGNOSTIC, 6, -7.792474343104e-01, 1.797693134862e+308, 2.3011e-01, 3.3128e-03, + 2DIAGNOSTIC, 7, -7.805990126043e-01, 1.797693134862e+308, 2.3465e-01, 4.5381e-03, + 2DIAGNOSTIC, 8, -7.805741396568e-01, 1.797693134862e+308, 2.3703e-01, 2.3780e-03, + 2DIAGNOSTIC, 9, -7.816872595613e-01, 1.797693134862e+308, 2.3952e-01, 2.4891e-03, + 2DIAGNOSTIC, 10, -7.832979517005e-01, 8.397195730866e-04, 2.4209e-01, 2.5671e-03, + 2DIAGNOSTIC, 11, -7.841050033832e-01, 7.999367493201e-04, 2.4499e-01, 2.8980e-03, + 2DIAGNOSTIC, 12, -7.849816458615e-01, 7.014682526190e-04, 2.4798e-01, 2.9981e-03, + 2DIAGNOSTIC, 13, -7.866327633985e-01, 6.287048722468e-04, 2.5093e-01, 2.9440e-03, + 2DIAGNOSTIC, 14, -7.899092446314e-01, 6.243534090423e-04, 2.5467e-01, 3.7451e-03, + 2DIAGNOSTIC, 15, -7.911569689821e-01, 6.319723583548e-04, 2.5783e-01, 3.1600e-03, + 2DIAGNOSTIC, 16, -7.919373599734e-01, 6.394567624686e-04, 2.6093e-01, 3.1009e-03, + 2DIAGNOSTIC, 17, -7.923872896058e-01, 6.272156143098e-04, 2.6375e-01, 2.8181e-03, + 2DIAGNOSTIC, 18, -7.926411992341e-01, 5.627081563797e-04, 2.6741e-01, 3.6581e-03, + 2DIAGNOSTIC, 19, -7.929599500577e-01, 4.789707236418e-04, 2.7113e-01, 3.7251e-03, + 2DIAGNOSTIC, 20, -7.929817346321e-01, 3.885914652816e-04, 2.7392e-01, 2.7831e-03, + 2DIAGNOSTIC, 21, -7.930837811353e-01, 2.871861512576e-04, 2.7639e-01, 2.4760e-03, + 2DIAGNOSTIC, 22, -7.932857788591e-01, 1.862487710211e-04, 2.7885e-01, 2.4588e-03, + 2DIAGNOSTIC, 23, -7.933509786681e-01, 1.026856447321e-04, 2.8161e-01, 2.7599e-03, + 2DIAGNOSTIC, 24, -7.936185394310e-01, 6.973783665532e-05, 2.8438e-01, 2.7630e-03, + 2DIAGNOSTIC, 25, -7.937960907541e-01, 5.338274995771e-05, 2.8713e-01, 2.7521e-03, + 2DIAGNOSTIC, 26, -7.937374224383e-01, 4.332322079151e-05, 2.8985e-01, 2.7230e-03, + 2DIAGNOSTIC, 27, -7.942246627970e-01, 4.260858873203e-05, 2.9317e-01, 3.3212e-03, + 2DIAGNOSTIC, 28, -7.944983497024e-01, 4.456434842119e-05, 2.9842e-01, 5.2438e-03, + 2DIAGNOSTIC, 29, -7.945300444472e-01, 4.659319815581e-05, 3.0170e-01, 3.2849e-03, + 2DIAGNOSTIC, 30, -7.946986798831e-01, 4.656260452888e-05, 3.0474e-01, 3.0379e-03, + 2DIAGNOSTIC, 31, -7.947756600237e-01, 4.428800760122e-05, 3.0832e-01, 3.5770e-03, + 2DIAGNOSTIC, 32, -7.948341155268e-01, 4.094578680756e-05, 3.1158e-01, 3.2630e-03, + 2DIAGNOSTIC, 33, -7.948785836463e-01, 3.509800888327e-05, 3.1409e-01, 2.5141e-03, + 2DIAGNOSTIC, 34, -7.950509633008e-01, 3.103029156717e-05, 3.1658e-01, 2.4838e-03, + 2DIAGNOSTIC, 35, -7.952631115082e-01, 2.840717217556e-05, 3.1928e-01, 2.7030e-03, + 2DIAGNOSTIC, 36, -7.954007089142e-01, 2.395139743302e-05, 3.2231e-01, 3.0351e-03, + 2DIAGNOSTIC, 37, -7.954572609196e-01, 2.279374749466e-05, 3.2505e-01, 2.7359e-03, + 2DIAGNOSTIC, 38, -7.954113573109e-01, 2.180941479871e-05, 3.2742e-01, 2.3720e-03, + 2DIAGNOSTIC, 39, -7.955098818213e-01, 2.005673006174e-05, 3.3013e-01, 2.7032e-03, + 2DIAGNOSTIC, 40, -7.956454440523e-01, 1.922487316233e-05, 3.3284e-01, 2.7120e-03, + 2DIAGNOSTIC, 41, -7.957749066096e-01, 1.844396608272e-05, 3.3580e-01, 2.9590e-03, + 2DIAGNOSTIC, 42, -7.958923090337e-01, 1.754281853768e-05, 3.3915e-01, 3.3500e-03, + 2DIAGNOSTIC, 43, -7.958418040963e-01, 1.503445098422e-05, 3.4154e-01, 2.3909e-03, + 2DIAGNOSTIC, 44, -7.958731355924e-01, 1.293674198915e-05, 3.4392e-01, 2.3880e-03, + 2DIAGNOSTIC, 45, -7.959169360371e-01, 1.175771656403e-05, 3.4630e-01, 2.3749e-03, + 2DIAGNOSTIC, 46, -7.959716841910e-01, 1.103530493188e-05, 3.4862e-01, 2.3191e-03, + 2DIAGNOSTIC, 47, -7.960135035281e-01, 1.012156375156e-05, 3.5096e-01, 2.3379e-03, + 2DIAGNOSTIC, 48, -7.963321152172e-01, 1.039531995415e-05, 3.5379e-01, 2.8331e-03, + 2DIAGNOSTIC, 49, -7.964431369174e-01, 1.119993926051e-05, 3.5717e-01, 3.3770e-03, + 2DIAGNOSTIC, 50, -7.965838165000e-01, 1.292684479504e-05, 3.6050e-01, 3.3281e-03, + 2DIAGNOSTIC, 51, -7.965971794374e-01, 1.439850624907e-05, 3.6282e-01, 2.3260e-03, + 2DIAGNOSTIC, 52, -7.966581720674e-01, 1.574965457280e-05, 3.6550e-01, 2.6782e-03, + 2DIAGNOSTIC, 53, -7.966202739664e-01, 1.496601868143e-05, 3.6797e-01, 2.4738e-03, + 2DIAGNOSTIC, 54, -7.966355568105e-01, 1.313330832426e-05, 3.7038e-01, 2.4068e-03, + 2DIAGNOSTIC, 55, -7.966668641806e-01, 1.066316016068e-05, 3.7282e-01, 2.4369e-03, + 2DIAGNOSTIC, 56, -7.968128671435e-01, 8.614741300900e-06, 3.7550e-01, 2.6820e-03, + 2DIAGNOSTIC, 57, -7.969972979508e-01, 7.228346558603e-06, 3.7778e-01, 2.2860e-03, + 2DIAGNOSTIC, 58, -7.970039526254e-01, 7.238795965085e-06, 3.8005e-01, 2.2621e-03, + 2DIAGNOSTIC, 59, -7.970946479442e-01, 7.841400253807e-06, 3.8343e-01, 3.3829e-03, + 2DIAGNOSTIC, 60, -7.971759795909e-01, 9.044736919487e-06, 3.8567e-01, 2.2390e-03, + 2DIAGNOSTIC, 61, -7.972067989671e-01, 9.612162077115e-06, 3.8796e-01, 2.2931e-03, + 2DIAGNOSTIC, 62, -7.973127795276e-01, 1.025140096568e-05, 3.9080e-01, 2.8379e-03, + 2DIAGNOSTIC, 63, -7.975551798315e-01, 1.109711760768e-05, 3.9431e-01, 3.5090e-03, + 2DIAGNOSTIC, 64, -7.975496801915e-01, 1.093400949369e-05, 3.9699e-01, 2.6801e-03, + 2DIAGNOSTIC, 65, -7.977038006600e-01, 1.080086852428e-05, 3.9933e-01, 2.3441e-03, + 2DIAGNOSTIC, 66, -7.976589805992e-01, 1.019912908674e-05, 4.0168e-01, 2.3520e-03, + 2DIAGNOSTIC, 67, -7.976139419809e-01, 9.439095039601e-06, 4.0432e-01, 2.6319e-03, + 2DIAGNOSTIC, 68, -7.976234690565e-01, 7.911101970352e-06, 4.0655e-01, 2.2359e-03, + 2DIAGNOSTIC, 69, -7.975719447274e-01, 5.897646030258e-06, 4.0878e-01, 2.2290e-03, + 2DIAGNOSTIC, 70, -7.976507087159e-01, 4.252706612166e-06, 4.1100e-01, 2.2230e-03, + 2DIAGNOSTIC, 71, -7.976771661622e-01, 2.564667783634e-06, 4.1327e-01, 2.2631e-03, + 2DIAGNOSTIC, 72, -7.978073300816e-01, 1.874675323279e-06, 4.1558e-01, 2.3100e-03, + 2DIAGNOSTIC, 73, -7.980847657816e-01, 3.615616368717e-06, 4.1885e-01, 3.2730e-03, + 2DIAGNOSTIC, 74, -7.981351268185e-01, 5.166225041875e-06, 4.2182e-01, 2.9700e-03, + 2DIAGNOSTIC, 75, -7.981766232492e-01, 7.170944223468e-06, 4.2478e-01, 2.9609e-03, + 2DIAGNOSTIC, 76, -7.981708509377e-01, 8.248478324951e-06, 4.2795e-01, 3.1679e-03, + 2DIAGNOSTIC, 77, -7.982056381026e-01, 8.487690872709e-06, 4.3046e-01, 2.5091e-03, + 2DIAGNOSTIC, 78, -7.982201913522e-01, 8.038730827806e-06, 4.3299e-01, 2.5361e-03, + 2DIAGNOSTIC, 79, -7.983144462783e-01, 7.049465777221e-06, 4.3622e-01, 3.2299e-03, + 2DIAGNOSTIC, 80, -7.985338026772e-01, 6.789776139925e-06, 4.3910e-01, 2.8799e-03, + 2DIAGNOSTIC, 81, -7.986730708044e-01, 6.631694408484e-06, 4.4147e-01, 2.3630e-03, + 2DIAGNOSTIC, 82, -7.997621253873e-01, 1.117007913007e-05, 4.4409e-01, 2.6250e-03, + 2DIAGNOSTIC, 83, -8.003968593192e-01, 1.837360026779e-05, 4.4670e-01, 2.6109e-03, + 2DIAGNOSTIC, 84, -8.007470342129e-01, 2.534814472788e-05, 4.4931e-01, 2.6081e-03, + 2DIAGNOSTIC, 85, -8.007990685750e-01, 3.018701930818e-05, 4.5204e-01, 2.7330e-03, + 2DIAGNOSTIC, 86, -8.007023772800e-01, 3.163128489751e-05, 4.5481e-01, 2.7621e-03, + 2DIAGNOSTIC, 87, -8.006940162067e-01, 3.009629644770e-05, 4.5723e-01, 2.4240e-03, + 2DIAGNOSTIC, 88, -8.005979295784e-01, 2.533348428790e-05, 4.5999e-01, 2.7621e-03, + 2DIAGNOSTIC, 89, -8.007955970339e-01, 1.946107938900e-05, 4.6238e-01, 2.3911e-03, + 2DIAGNOSTIC, 90, -8.010347362506e-01, 1.373891184987e-05, 4.6569e-01, 3.3059e-03, + 2DIAGNOSTIC, 91, -8.008322987537e-01, 6.512511136536e-06, 4.6809e-01, 2.4021e-03, + 2DIAGNOSTIC, 92, -8.008469672669e-01, 3.140522249021e-06, 4.7043e-01, 2.3351e-03, + 2DIAGNOSTIC, 93, -8.008720031006e-01, 2.075344585439e-06, 4.7277e-01, 2.3420e-03, + 2DIAGNOSTIC, 94, -8.008536421848e-01, 2.088620740125e-06, 4.7576e-01, 2.9941e-03, + 2DIAGNOSTIC, 95, -8.009169635022e-01, 2.359991390744e-06, 4.7873e-01, 2.9640e-03, + 2DIAGNOSTIC, 96, -8.007404532307e-01, 1.423559887401e-06, 4.8112e-01, 2.3961e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.874435546996e-01, 1.797693134862e+308, 5.4145e-01, 6.0329e-02, + 2DIAGNOSTIC, 2, -5.877658014541e-01, 1.797693134862e+308, 5.5322e-01, 1.1765e-02, + 2DIAGNOSTIC, 3, -5.882435160732e-01, 1.797693134862e+308, 5.6532e-01, 1.2100e-02, + 2DIAGNOSTIC, 4, -5.889349644433e-01, 1.797693134862e+308, 5.7798e-01, 1.2661e-02, + 2DIAGNOSTIC, 5, -5.900082037442e-01, 1.797693134862e+308, 5.9023e-01, 1.2251e-02, + 2DIAGNOSTIC, 6, -5.914469558558e-01, 1.797693134862e+308, 6.0243e-01, 1.2204e-02, + 2DIAGNOSTIC, 7, -5.931589422582e-01, 1.797693134862e+308, 6.1470e-01, 1.2269e-02, + 2DIAGNOSTIC, 8, -5.948012423175e-01, 1.797693134862e+308, 6.3276e-01, 1.8053e-02, + 2DIAGNOSTIC, 9, -5.954257202081e-01, 1.797693134862e+308, 6.5539e-01, 2.2636e-02, + 2DIAGNOSTIC, 10, -5.954603316160e-01, 1.037723195459e-03, 6.6841e-01, 1.3022e-02, + 2DIAGNOSTIC, 11, -5.955692846196e-01, 9.280655917739e-04, 6.8106e-01, 1.2652e-02, + 2DIAGNOSTIC, 12, -5.957458303703e-01, 7.729895167177e-04, 6.9342e-01, 1.2358e-02, + 2DIAGNOSTIC, 13, -5.959944389987e-01, 5.983293100874e-04, 7.0596e-01, 1.2533e-02, + 2DIAGNOSTIC, 14, -5.962985801695e-01, 4.285682740246e-04, 7.1873e-01, 1.2774e-02, + 2DIAGNOSTIC, 15, -5.966456669802e-01, 2.880554979647e-04, 7.3064e-01, 1.1908e-02, + 2DIAGNOSTIC, 16, -5.970595099180e-01, 1.937609640831e-04, 7.4277e-01, 1.2134e-02, + 2DIAGNOSTIC, 17, -5.975994260378e-01, 1.551254302718e-04, 7.5787e-01, 1.5103e-02, + 2DIAGNOSTIC, 18, -5.981793947745e-01, 1.650544869757e-04, 7.7004e-01, 1.2163e-02, + 2DIAGNOSTIC, 19, -5.984123807138e-01, 1.802105953849e-04, 7.8344e-01, 1.3407e-02, + 2DIAGNOSTIC, 20, -5.985588603670e-01, 1.816728150406e-04, 8.0171e-01, 1.8265e-02, + 2DIAGNOSTIC, 21, -5.985907965441e-01, 1.694481972317e-04, 8.1394e-01, 1.2234e-02, + 2DIAGNOSTIC, 22, -5.987507481091e-01, 1.498480538064e-04, 8.2648e-01, 1.2537e-02, + 2DIAGNOSTIC, 23, -5.988749338012e-01, 1.255734400408e-04, 8.4069e-01, 1.4214e-02, + 2DIAGNOSTIC, 24, -5.989753353642e-01, 9.967168308419e-05, 8.5778e-01, 1.7084e-02, + 2DIAGNOSTIC, 25, -5.989851602427e-01, 7.347808747432e-05, 8.7017e-01, 1.2393e-02, + 2DIAGNOSTIC, 26, -5.990242941350e-01, 5.077903063907e-05, 8.8419e-01, 1.4017e-02, + 2DIAGNOSTIC, 27, -5.990578301256e-01, 3.499545724062e-05, 8.9762e-01, 1.3434e-02, + 2DIAGNOSTIC, 28, -5.990954627601e-01, 2.755175711819e-05, 9.1067e-01, 1.3051e-02, + 2DIAGNOSTIC, 29, -5.991322968279e-01, 2.251372657603e-05, 9.2387e-01, 1.3200e-02, + 2DIAGNOSTIC, 30, -5.992494718812e-01, 2.001837872480e-05, 9.3787e-01, 1.3997e-02, + 2DIAGNOSTIC, 31, -5.993791190909e-01, 1.830692280412e-05, 9.5668e-01, 1.8806e-02, + 2DIAGNOSTIC, 32, -5.994580710727e-01, 1.855588834303e-05, 9.6893e-01, 1.2253e-02, + 2DIAGNOSTIC, 33, -5.995257223832e-01, 1.987023245289e-05, 9.8104e-01, 1.2115e-02, + 2DIAGNOSTIC, 34, -5.996210947212e-01, 2.206678171578e-05, 9.9638e-01, 1.5336e-02, + 2DIAGNOSTIC, 35, -5.996672881879e-01, 2.284743846898e-05, 1.0085e+00, 1.2122e-02, + 2DIAGNOSTIC, 36, -5.997198502552e-01, 2.268756089231e-05, 1.0237e+00, 1.5246e-02, + 2DIAGNOSTIC, 37, -5.997291444618e-01, 2.101113223051e-05, 1.0377e+00, 1.3908e-02, + 2DIAGNOSTIC, 38, -5.997266843509e-01, 1.796834304564e-05, 1.0549e+00, 1.7226e-02, + 2DIAGNOSTIC, 39, -5.997270755974e-01, 1.388657745256e-05, 1.0688e+00, 1.3908e-02, + 2DIAGNOSTIC, 40, -5.997235538307e-01, 1.008282810585e-05, 1.0821e+00, 1.3352e-02, + 2DIAGNOSTIC, 41, -5.997227829790e-01, 7.065948862840e-06, 1.0948e+00, 1.2676e-02, + 2DIAGNOSTIC, 42, -5.997177264280e-01, 4.426538156698e-06, 1.1086e+00, 1.3762e-02, + 2DIAGNOSTIC, 43, -5.997197803086e-01, 2.318405027481e-06, 1.1216e+00, 1.2996e-02, + 2DIAGNOSTIC, 44, -5.997200037786e-01, 1.183207271556e-06, 1.1364e+00, 1.4831e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.992317022601e-01, 1.797693134862e+308, 1.3659e+00, 2.2947e-01, + Elapsed time (stage 1): 1.3844e+00 + + +Total elapsed time: 3.4330e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:05:03 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 48 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 83 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 91.49% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 91.49% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[19160 1148 994 408 9466 442 799 491 489 165 2106 741 + 182 207 589 262 0 0 0 0 0 0 0 0 + 0 0 0 0 0 0 0 0 0 0 0 0 + 0 0 0 0 0 0 0 0 0 0 0 0] +[207093 43863 27016 20026 27439 20236 22548 16000 18820 14304 + 17770 9045 12343 9547 11091 8957 11177 3395 10147 5965 + 1491 2779 2664 1843 5125 1759 1988 2033 775 672 + 1346 1037 848 879 0 1191 811 800 451 661 + 871 190 171 176 765 250 234 0] +[ 0 0 0 0 0 0 0 0 0 0 0 0 + 0 0 0 6718 0 0 606 17923 3866 0 781 0 + 0 0 0 0 165 1718 0 617 552 0 0 0 + 5712 0 0 0 9414 224 0 253 519 0 0 0] +[ 13526 408 1049 0 3227 3683 1946 1422 6698 2862 + 2712 919 1884 807 1958 154135 1584 742 20747 2512 + 1283 4229 177 897 1102 252 762 1426 9077 100033 + 7210 250 11260 1489 541 1642 3530 546 2330 1106 + 2544 7002 1243 21214 20767 1645 996 892] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:14:04 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:14:09 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:17:51 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:17:51 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:17:52 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:18:02 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:18:05 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC009 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:18:20 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:18:44 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:20:32 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:20:33 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:21:49 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:21:50 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x560020c48d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [73.2585, 118.949, -134.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x560020abf730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe41fae7010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x560020c4c020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 47.1306, -128.664] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x560020c520c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe41c428010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x560020c62840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [73.2585, 118.949, -134.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x560020c4e890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe417754010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x560020c663e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 47.1306, -128.664] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x560020c55130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fe414095010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.748613516126e-01, 1.797693134862e+308, 2.3369e-01, 2.3369e-01, + 2DIAGNOSTIC, 2, -4.777930935977e-01, 1.797693134862e+308, 2.3496e-01, 1.2691e-03, + 2DIAGNOSTIC, 3, -4.820928280868e-01, 1.797693134862e+308, 2.3626e-01, 1.3070e-03, + 2DIAGNOSTIC, 4, -4.890815999134e-01, 1.797693134862e+308, 2.3780e-01, 1.5352e-03, + 2DIAGNOSTIC, 5, -4.952107814002e-01, 1.797693134862e+308, 2.3919e-01, 1.3890e-03, + 2DIAGNOSTIC, 6, -4.969807169618e-01, 1.797693134862e+308, 2.4064e-01, 1.4510e-03, + 2DIAGNOSTIC, 7, -4.973191354863e-01, 1.797693134862e+308, 2.4193e-01, 1.2941e-03, + 2DIAGNOSTIC, 8, -4.971853006251e-01, 1.797693134862e+308, 2.4321e-01, 1.2732e-03, + 2DIAGNOSTIC, 9, -4.980062745152e-01, 1.797693134862e+308, 2.4468e-01, 1.4770e-03, + 2DIAGNOSTIC, 10, -4.998274481106e-01, 3.324476836036e-03, 2.4675e-01, 2.0680e-03, + 2DIAGNOSTIC, 11, -4.997309166273e-01, 2.350689975956e-03, 2.4844e-01, 1.6911e-03, + 2DIAGNOSTIC, 12, -5.003034378286e-01, 1.504050341870e-03, 2.5034e-01, 1.8950e-03, + 2DIAGNOSTIC, 13, -5.009188682679e-01, 8.682127981220e-04, 2.5175e-01, 1.4100e-03, + 2DIAGNOSTIC, 14, -5.004781996166e-01, 5.079039384213e-04, 2.5328e-01, 1.5349e-03, + 2DIAGNOSTIC, 15, -5.018622616965e-01, 4.361944657036e-04, 2.5506e-01, 1.7819e-03, + 2DIAGNOSTIC, 16, -5.031113618444e-01, 4.407302330005e-04, 2.5723e-01, 2.1710e-03, + 2DIAGNOSTIC, 17, -5.048514097118e-01, 4.746389128037e-04, 2.5878e-01, 1.5500e-03, + 2DIAGNOSTIC, 18, -5.046215749433e-01, 4.486824608030e-04, 2.6060e-01, 1.8148e-03, + 2DIAGNOSTIC, 19, -5.047265830984e-01, 4.121507422010e-04, 2.6217e-01, 1.5750e-03, + 2DIAGNOSTIC, 20, -5.044853190321e-01, 3.868904223766e-04, 2.6416e-01, 1.9898e-03, + 2DIAGNOSTIC, 21, -5.052096621903e-01, 3.440629911836e-04, 2.6669e-01, 2.5280e-03, + 2DIAGNOSTIC, 22, -5.049194481898e-01, 2.791308659577e-04, 2.6822e-01, 1.5261e-03, + 2DIAGNOSTIC, 23, -5.050274042870e-01, 2.134031699420e-04, 2.7001e-01, 1.7920e-03, + 2DIAGNOSTIC, 24, -5.050667044475e-01, 1.240385383792e-04, 2.7155e-01, 1.5371e-03, + 2DIAGNOSTIC, 25, -5.047716538157e-01, 5.474237312497e-05, 2.7311e-01, 1.5600e-03, + 2DIAGNOSTIC, 26, -5.047963079563e-01, 1.263675719038e-05, 2.7467e-01, 1.5631e-03, + 2DIAGNOSTIC, 27, -5.048255419033e-01, 9.994401106307e-06, 2.7621e-01, 1.5368e-03, + 2DIAGNOSTIC, 28, -5.048535461970e-01, 2.601078787558e-06, 2.7778e-01, 1.5721e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.642970353000e-01, 1.797693134862e+308, 5.1530e-01, 2.3752e-01, + 2DIAGNOSTIC, 2, -3.640659788162e-01, 1.797693134862e+308, 5.1758e-01, 2.2821e-03, + 2DIAGNOSTIC, 3, -3.647242589658e-01, 1.797693134862e+308, 5.1976e-01, 2.1861e-03, + 2DIAGNOSTIC, 4, -3.659795919407e-01, 1.797693134862e+308, 5.2202e-01, 2.2590e-03, + 2DIAGNOSTIC, 5, -3.675029528017e-01, 1.797693134862e+308, 5.2425e-01, 2.2221e-03, + 2DIAGNOSTIC, 6, -3.691982799481e-01, 1.797693134862e+308, 5.2653e-01, 2.2860e-03, + 2DIAGNOSTIC, 7, -3.725940079651e-01, 1.797693134862e+308, 5.2890e-01, 2.3730e-03, + 2DIAGNOSTIC, 8, -3.959011242105e-01, 1.797693134862e+308, 5.3201e-01, 3.1009e-03, + 2DIAGNOSTIC, 9, -4.119616153351e-01, 1.797693134862e+308, 5.3921e-01, 7.2060e-03, + 2DIAGNOSTIC, 10, -4.119615504741e-01, 8.613452143277e-03, 5.4127e-01, 2.0630e-03, + 2DIAGNOSTIC, 11, -4.119618647365e-01, 9.155950320666e-03, 5.4331e-01, 2.0392e-03, + 2DIAGNOSTIC, 12, -4.119623960924e-01, 8.780104956948e-03, 5.4536e-01, 2.0440e-03, + 2DIAGNOSTIC, 13, -4.119632943684e-01, 7.689218818697e-03, 5.4765e-01, 2.2922e-03, + 2DIAGNOSTIC, 14, -4.119648116775e-01, 6.117433789915e-03, 5.4982e-01, 2.1698e-03, + 2DIAGNOSTIC, 15, -4.119673758635e-01, 4.300416152294e-03, 5.5196e-01, 2.1400e-03, + 2DIAGNOSTIC, 16, -4.119717126617e-01, 2.427189121239e-03, 5.5407e-01, 2.1060e-03, + 2DIAGNOSTIC, 17, -4.119790220664e-01, 6.874617255666e-04, 5.5618e-01, 2.1119e-03, + 2DIAGNOSTIC, 18, -4.119913235779e-01, 4.034876110628e-06, 5.5835e-01, 2.1751e-03, + 2DIAGNOSTIC, 19, -4.119530773050e-01, 3.010469585694e-06, 5.6053e-01, 2.1770e-03, + 2DIAGNOSTIC, 20, -4.119878309470e-01, 3.269419243314e-06, 5.6270e-01, 2.1660e-03, + 2DIAGNOSTIC, 21, -4.120452376898e-01, 5.278576955814e-06, 5.6492e-01, 2.2199e-03, + 2DIAGNOSTIC, 22, -4.121406229851e-01, 9.809613604764e-06, 5.6705e-01, 2.1369e-03, + 2DIAGNOSTIC, 23, -4.122973400524e-01, 1.800775112770e-05, 5.6917e-01, 2.1179e-03, + 2DIAGNOSTIC, 24, -4.125640651019e-01, 3.186896496189e-05, 5.7131e-01, 2.1389e-03, + 2DIAGNOSTIC, 25, -4.129842807068e-01, 5.363980247505e-05, 5.7352e-01, 2.2099e-03, + 2DIAGNOSTIC, 26, -4.138798479298e-01, 9.315847372299e-05, 5.7571e-01, 2.1861e-03, + 2DIAGNOSTIC, 27, -4.149209668844e-01, 1.480877926913e-04, 5.7792e-01, 2.2149e-03, + 2DIAGNOSTIC, 28, -4.159989486777e-01, 2.123824679641e-04, 5.8015e-01, 2.2271e-03, + 2DIAGNOSTIC, 29, -4.170622203328e-01, 2.769562968123e-04, 5.8302e-01, 2.8710e-03, + 2DIAGNOSTIC, 30, -4.174405183515e-01, 3.205145040446e-04, 5.8582e-01, 2.7978e-03, + 2DIAGNOSTIC, 31, -4.176096460727e-01, 3.361739437847e-04, 5.8835e-01, 2.5358e-03, + 2DIAGNOSTIC, 32, -4.178512576158e-01, 3.264770573995e-04, 5.9091e-01, 2.5570e-03, + 2DIAGNOSTIC, 33, -4.179047754516e-01, 2.907730759055e-04, 5.9333e-01, 2.4190e-03, + 2DIAGNOSTIC, 34, -4.179797359727e-01, 2.367660440411e-04, 5.9584e-01, 2.5160e-03, + 2DIAGNOSTIC, 35, -4.179903098624e-01, 1.721461390074e-04, 5.9937e-01, 3.5281e-03, + 2DIAGNOSTIC, 36, -4.180138725010e-01, 1.128540253405e-04, 6.0180e-01, 2.4259e-03, + 2DIAGNOSTIC, 37, -4.179362941845e-01, 6.420951724814e-05, 6.0410e-01, 2.3060e-03, + 2DIAGNOSTIC, 38, -4.178282603181e-01, 2.967346704190e-05, 6.0673e-01, 2.6250e-03, + 2DIAGNOSTIC, 39, -4.180162574030e-01, 1.664334459794e-05, 6.0903e-01, 2.3050e-03, + 2DIAGNOSTIC, 40, -4.180485917219e-01, 9.802688622988e-06, 6.1133e-01, 2.2941e-03, + 2DIAGNOSTIC, 41, -4.184631017885e-01, 1.231692518968e-05, 6.1361e-01, 2.2869e-03, + 2DIAGNOSTIC, 42, -4.194384234703e-01, 3.375292585999e-05, 6.1627e-01, 2.6598e-03, + 2DIAGNOSTIC, 43, -4.205201360893e-01, 6.909210932046e-05, 6.2056e-01, 4.2889e-03, + 2DIAGNOSTIC, 44, -4.206836840857e-01, 9.976578862649e-05, 6.2283e-01, 2.2640e-03, + 2DIAGNOSTIC, 45, -4.212622187782e-01, 1.289788036685e-04, 6.2508e-01, 2.2531e-03, + 2DIAGNOSTIC, 46, -4.220254762185e-01, 1.564792360455e-04, 6.2731e-01, 2.2299e-03, + 2DIAGNOSTIC, 47, -4.228776181754e-01, 1.789208403011e-04, 6.2959e-01, 2.2831e-03, + 2DIAGNOSTIC, 48, -4.239359273414e-01, 1.967235068943e-04, 6.3192e-01, 2.3251e-03, + 2DIAGNOSTIC, 49, -4.259547396528e-01, 2.263534310908e-04, 6.3519e-01, 3.2699e-03, + 2DIAGNOSTIC, 50, -4.273155649335e-01, 2.521058242531e-04, 6.3876e-01, 3.5751e-03, + 2DIAGNOSTIC, 51, -4.273012350221e-01, 2.577807711437e-04, 6.4103e-01, 2.2640e-03, + 2DIAGNOSTIC, 52, -4.276963763696e-01, 2.569760600609e-04, 6.4361e-01, 2.5830e-03, + 2DIAGNOSTIC, 53, -4.280907392185e-01, 2.508785023702e-04, 6.4622e-01, 2.6059e-03, + 2DIAGNOSTIC, 54, -4.282344235245e-01, 2.243928061257e-04, 6.4881e-01, 2.5890e-03, + 2DIAGNOSTIC, 55, -4.282472804595e-01, 1.846540112607e-04, 6.5107e-01, 2.2609e-03, + 2DIAGNOSTIC, 56, -4.282995573139e-01, 1.390747538020e-04, 6.5367e-01, 2.6000e-03, + 2DIAGNOSTIC, 57, -4.283783612396e-01, 9.325656015715e-05, 6.5595e-01, 2.2800e-03, + 2DIAGNOSTIC, 58, -4.284442873804e-01, 5.294581958806e-05, 6.5824e-01, 2.2938e-03, + 2DIAGNOSTIC, 59, -4.286879424056e-01, 3.505002163736e-05, 6.6053e-01, 2.2922e-03, + 2DIAGNOSTIC, 60, -4.289764760321e-01, 3.347826878958e-05, 6.6316e-01, 2.6309e-03, + 2DIAGNOSTIC, 61, -4.294655714937e-01, 3.404631022336e-05, 6.6615e-01, 2.9860e-03, + 2DIAGNOSTIC, 62, -4.297577548235e-01, 3.880913241652e-05, 6.6881e-01, 2.6610e-03, + 2DIAGNOSTIC, 63, -4.297728639967e-01, 4.416973499541e-05, 6.7148e-01, 2.6710e-03, + 2DIAGNOSTIC, 64, -4.297368477809e-01, 4.639025321039e-05, 6.7422e-01, 2.7380e-03, + 2DIAGNOSTIC, 65, -4.297597759536e-01, 4.449078112473e-05, 6.7661e-01, 2.3949e-03, + 2DIAGNOSTIC, 66, -4.297245321955e-01, 3.850272131578e-05, 6.7897e-01, 2.3551e-03, + 2DIAGNOSTIC, 67, -4.297696376523e-01, 3.030613435440e-05, 6.8129e-01, 2.3201e-03, + 2DIAGNOSTIC, 68, -4.298351596002e-01, 2.083326937983e-05, 6.8354e-01, 2.2511e-03, + 2DIAGNOSTIC, 69, -4.300699539095e-01, 1.444830956883e-05, 6.8613e-01, 2.5852e-03, + 2DIAGNOSTIC, 70, -4.304378621215e-01, 1.318001342451e-05, 6.8905e-01, 2.9230e-03, + 2DIAGNOSTIC, 71, -4.303906062944e-01, 1.484076451176e-05, 6.9127e-01, 2.2249e-03, + 2DIAGNOSTIC, 72, -4.304246235413e-01, 1.824749111684e-05, 6.9352e-01, 2.2511e-03, + 2DIAGNOSTIC, 73, -4.303368687375e-01, 1.918970926907e-05, 6.9631e-01, 2.7821e-03, + 2DIAGNOSTIC, 74, -4.306085300358e-01, 2.044076572054e-05, 7.0448e-01, 8.1742e-03, + 2DIAGNOSTIC, 75, -4.306085293144e-01, 1.982293335068e-05, 7.0677e-01, 2.2931e-03, + 2DIAGNOSTIC, 76, -4.306085341183e-01, 1.707496546140e-05, 7.0904e-01, 2.2621e-03, + 2DIAGNOSTIC, 77, -4.306085422402e-01, 1.329537978511e-05, 7.1129e-01, 2.2500e-03, + 2DIAGNOSTIC, 78, -4.306085559692e-01, 8.923582886053e-06, 7.1351e-01, 2.2280e-03, + 2DIAGNOSTIC, 79, -4.306085791708e-01, 5.745602233502e-06, 7.1573e-01, 2.2161e-03, + 2DIAGNOSTIC, 80, -4.306086183649e-01, 5.266191627436e-06, 7.1797e-01, 2.2428e-03, + 2DIAGNOSTIC, 81, -4.306086845286e-01, 3.953132253052e-06, 7.2073e-01, 2.7580e-03, + 2DIAGNOSTIC, 82, -4.306087960882e-01, 2.662274739508e-06, 7.2381e-01, 3.0751e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -2.932430753472e-01, 1.797693134862e+308, 9.8716e-01, 2.6336e-01, + 2DIAGNOSTIC, 2, -2.942103618203e-01, 1.797693134862e+308, 1.0001e+00, 1.2924e-02, + 2DIAGNOSTIC, 3, -2.969823015595e-01, 1.797693134862e+308, 1.0131e+00, 1.3022e-02, + 2DIAGNOSTIC, 4, -3.004747472747e-01, 1.797693134862e+308, 1.0253e+00, 1.2175e-02, + 2DIAGNOSTIC, 5, -3.023104127892e-01, 1.797693134862e+308, 1.0373e+00, 1.1970e-02, + 2DIAGNOSTIC, 6, -3.082201631171e-01, 1.797693134862e+308, 1.0493e+00, 1.2065e-02, + 2DIAGNOSTIC, 7, -3.099125816729e-01, 1.797693134862e+308, 1.0621e+00, 1.2803e-02, + 2DIAGNOSTIC, 8, -3.129263306952e-01, 1.797693134862e+308, 1.0747e+00, 1.2584e-02, + 2DIAGNOSTIC, 9, -3.182421123289e-01, 1.797693134862e+308, 1.0893e+00, 1.4616e-02, + 2DIAGNOSTIC, 10, -3.353431638413e-01, 7.374324596288e-03, 1.1095e+00, 2.0214e-02, + 2DIAGNOSTIC, 11, -3.401360948930e-01, 8.094927066147e-03, 1.1220e+00, 1.2512e-02, + 2DIAGNOSTIC, 12, -3.627917881383e-01, 9.702335588966e-03, 1.1345e+00, 1.2476e-02, + 2DIAGNOSTIC, 13, -5.036645173182e-01, 1.934476074656e-02, 1.1561e+00, 2.1587e-02, + 2DIAGNOSTIC, 14, -5.155401357445e-01, 2.588680148064e-02, 1.1674e+00, 1.1332e-02, + 2DIAGNOSTIC, 15, -5.342949213404e-01, 2.993838332594e-02, 1.1789e+00, 1.1432e-02, + 2DIAGNOSTIC, 16, -5.432740833222e-01, 3.134863579185e-02, 1.1921e+00, 1.3267e-02, + 2DIAGNOSTIC, 17, -5.472650435656e-01, 2.992409937121e-02, 1.2071e+00, 1.4980e-02, + 2DIAGNOSTIC, 18, -5.505513187084e-01, 2.618660871689e-02, 1.2185e+00, 1.1386e-02, + 2DIAGNOSTIC, 19, -5.563850286087e-01, 2.099891807817e-02, 1.2321e+00, 1.3550e-02, + 2DIAGNOSTIC, 20, -5.713776487424e-01, 1.578186645783e-02, 1.2476e+00, 1.5514e-02, + 2DIAGNOSTIC, 21, -5.769351015323e-01, 1.016661567909e-02, 1.2597e+00, 1.2137e-02, + 2DIAGNOSTIC, 22, -5.818301510705e-01, 5.053016393429e-03, 1.2788e+00, 1.9125e-02, + 2DIAGNOSTIC, 23, -5.820785405891e-01, 4.159494542443e-03, 1.2913e+00, 1.2439e-02, + 2DIAGNOSTIC, 24, -5.826927760027e-01, 3.311687521101e-03, 1.3042e+00, 1.2963e-02, + 2DIAGNOSTIC, 25, -5.829924639832e-01, 2.729171075807e-03, 1.3163e+00, 1.2054e-02, + 2DIAGNOSTIC, 26, -5.839653818884e-01, 2.192273119720e-03, 1.3290e+00, 1.2664e-02, + 2DIAGNOSTIC, 27, -5.871560940965e-01, 1.672528376939e-03, 1.3618e+00, 3.2805e-02, + 2DIAGNOSTIC, 28, -5.871775068801e-01, 1.118442018778e-03, 1.3756e+00, 1.3836e-02, + 2DIAGNOSTIC, 29, -5.871787470501e-01, 6.277270768884e-04, 1.3894e+00, 1.3811e-02, + 2DIAGNOSTIC, 30, -5.871806727199e-01, 4.243465431075e-04, 1.4014e+00, 1.1946e-02, + 2DIAGNOSTIC, 31, -5.871937188101e-01, 3.036512850382e-04, 1.4132e+00, 1.1890e-02, + 2DIAGNOSTIC, 32, -5.872399173418e-01, 2.558552064024e-04, 1.4252e+00, 1.1992e-02, + 2DIAGNOSTIC, 33, -5.872842626221e-01, 1.927499140036e-04, 1.4395e+00, 1.4285e-02, + 2DIAGNOSTIC, 34, -5.873193971242e-01, 1.284191253548e-04, 1.4555e+00, 1.5983e-02, + 2DIAGNOSTIC, 35, -5.873393343059e-01, 6.212215231285e-05, 1.4681e+00, 1.2625e-02, + 2DIAGNOSTIC, 36, -5.874368439715e-01, 1.045989762957e-05, 1.4804e+00, 1.2252e-02, + 2DIAGNOSTIC, 37, -5.876037615848e-01, 1.409167769767e-05, 1.4928e+00, 1.2446e-02, + 2DIAGNOSTIC, 38, -5.877805801744e-01, 1.921760474827e-05, 1.5053e+00, 1.2453e-02, + 2DIAGNOSTIC, 39, -5.879583137713e-01, 2.492738105495e-05, 1.5196e+00, 1.4302e-02, + 2DIAGNOSTIC, 40, -5.882760921983e-01, 3.260800644882e-05, 1.5316e+00, 1.1988e-02, + 2DIAGNOSTIC, 41, -5.885425780599e-01, 4.063909654070e-05, 1.5438e+00, 1.2264e-02, + 2DIAGNOSTIC, 42, -5.889608303435e-01, 5.065989946106e-05, 1.5564e+00, 1.2554e-02, + 2DIAGNOSTIC, 43, -5.902718532779e-01, 7.315252571435e-05, 1.5723e+00, 1.5919e-02, + 2DIAGNOSTIC, 44, -5.905014248234e-01, 9.057758559402e-05, 1.5849e+00, 1.2626e-02, + 2DIAGNOSTIC, 45, -5.907609493176e-01, 1.021761826878e-04, 1.6048e+00, 1.9831e-02, + 2DIAGNOSTIC, 46, -5.908228224543e-01, 1.055825042360e-04, 1.6189e+00, 1.4102e-02, + 2DIAGNOSTIC, 47, -5.908676071964e-01, 1.012705740378e-04, 1.6329e+00, 1.4010e-02, + 2DIAGNOSTIC, 48, -5.909428812319e-01, 9.028825524820e-05, 1.6468e+00, 1.3964e-02, + 2DIAGNOSTIC, 49, -5.909405877489e-01, 7.314945466860e-05, 1.6625e+00, 1.5639e-02, + 2DIAGNOSTIC, 50, -5.909335108888e-01, 5.347903216396e-05, 1.6785e+00, 1.6069e-02, + 2DIAGNOSTIC, 51, -5.909309327977e-01, 3.257308174434e-05, 1.6921e+00, 1.3515e-02, + 2DIAGNOSTIC, 52, -5.909085789262e-01, 1.338397437099e-05, 1.7054e+00, 1.3374e-02, + 2DIAGNOSTIC, 53, -5.909030666429e-01, 7.269012890852e-06, 1.7189e+00, 1.3512e-02, + 2DIAGNOSTIC, 54, -5.909016949097e-01, 3.026493552841e-06, 1.7335e+00, 1.4596e-02, + 2DIAGNOSTIC, 55, -5.909138390760e-01, 1.423572012230e-06, 1.7473e+00, 1.3755e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.032513764617e-01, 1.797693134862e+308, 2.1660e+00, 4.1866e-01, + 2DIAGNOSTIC, 2, -5.035882295621e-01, 1.797693134862e+308, 2.2433e+00, 7.7383e-02, + 2DIAGNOSTIC, 3, -5.037945602785e-01, 1.797693134862e+308, 2.3195e+00, 7.6174e-02, + 2DIAGNOSTIC, 4, -5.039665947773e-01, 1.797693134862e+308, 2.3951e+00, 7.5631e-02, + 2DIAGNOSTIC, 5, -5.041816085665e-01, 1.797693134862e+308, 2.4734e+00, 7.8303e-02, + 2DIAGNOSTIC, 6, -5.050205951619e-01, 1.797693134862e+308, 2.5848e+00, 1.1139e-01, + 2DIAGNOSTIC, 7, -5.052960093174e-01, 1.797693134862e+308, 2.6591e+00, 7.4232e-02, + 2DIAGNOSTIC, 8, -5.054488119458e-01, 1.797693134862e+308, 2.7454e+00, 8.6285e-02, + 2DIAGNOSTIC, 9, -5.055340839477e-01, 1.797693134862e+308, 2.8306e+00, 8.5261e-02, + 2DIAGNOSTIC, 10, -5.056017053263e-01, 3.395112984719e-04, 2.9339e+00, 1.0332e-01, + 2DIAGNOSTIC, 11, -5.058219038114e-01, 2.870272326374e-04, 3.0500e+00, 1.1604e-01, + 2DIAGNOSTIC, 12, -5.059093442091e-01, 2.371407167609e-04, 3.1480e+00, 9.8011e-02, + 2DIAGNOSTIC, 13, -5.059297885415e-01, 1.839711312676e-04, 3.2445e+00, 9.6524e-02, + 2DIAGNOSTIC, 14, -5.059377537891e-01, 1.295751618533e-04, 3.3291e+00, 8.4582e-02, + 2DIAGNOSTIC, 15, -5.059482299963e-01, 7.856856601716e-05, 3.4641e+00, 1.3498e-01, + 2DIAGNOSTIC, 16, -5.059521357007e-01, 5.627294492705e-05, 3.5584e+00, 9.4314e-02, + 2DIAGNOSTIC, 17, -5.059578093997e-01, 4.076262242964e-05, 3.6522e+00, 9.3779e-02, + 2DIAGNOSTIC, 18, -5.059671614384e-01, 2.849538024095e-05, 3.7334e+00, 8.1187e-02, + 2DIAGNOSTIC, 19, -5.059672354965e-01, 1.762391476351e-05, 3.8257e+00, 9.2294e-02, + 2DIAGNOSTIC, 20, -5.059663806416e-01, 8.098101351488e-06, 3.9118e+00, 8.6114e-02, + 2DIAGNOSTIC, 21, -5.059665963909e-01, 4.722713777730e-06, 3.9875e+00, 7.5768e-02, + 2DIAGNOSTIC, 22, -5.059676606143e-01, 3.605639417016e-06, 4.0852e+00, 9.7626e-02, + 2DIAGNOSTIC, 23, -5.059753327988e-01, 3.065101562186e-06, 4.1596e+00, 7.4433e-02, + 2DIAGNOSTIC, 24, -5.059759083289e-01, 2.602981020561e-06, 4.2607e+00, 1.0109e-01, + 2DIAGNOSTIC, 25, -5.059816587127e-01, 2.427903484668e-06, 4.3476e+00, 8.6874e-02, + 2DIAGNOSTIC, 26, -5.059782188591e-01, 2.165998684175e-06, 4.4223e+00, 7.4705e-02, + 2DIAGNOSTIC, 27, -5.059754362736e-01, 1.891915021507e-06, 4.5201e+00, 9.7873e-02, + 2DIAGNOSTIC, 28, -5.059765037467e-01, 1.779211174752e-06, 4.6090e+00, 8.8913e-02, + 2DIAGNOSTIC, 29, -5.059734948327e-01, 1.554126833218e-06, 4.7091e+00, 1.0001e-01, + 2DIAGNOSTIC, 30, -5.059825279808e-01, 1.456056201082e-06, 4.8053e+00, 9.6262e-02, + 2DIAGNOSTIC, 31, -5.059761885740e-01, 1.213019499263e-06, 4.9142e+00, 1.0889e-01, + 2DIAGNOSTIC, 32, -5.059768938124e-01, 1.001773998865e-06, 4.9962e+00, 8.1991e-02, + Elapsed time (stage 0): 5.1306e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.273458923449e-01, 1.797693134862e+308, 2.0324e-01, 2.0323e-01, + 2DIAGNOSTIC, 2, -8.284061874117e-01, 1.797693134862e+308, 2.0448e-01, 1.2400e-03, + 2DIAGNOSTIC, 3, -8.295670787038e-01, 1.797693134862e+308, 2.0566e-01, 1.1868e-03, + 2DIAGNOSTIC, 4, -8.327433875322e-01, 1.797693134862e+308, 2.0687e-01, 1.2100e-03, + 2DIAGNOSTIC, 5, -8.378866814443e-01, 1.797693134862e+308, 2.0810e-01, 1.2231e-03, + 2DIAGNOSTIC, 6, -8.434676575758e-01, 1.797693134862e+308, 2.0933e-01, 1.2369e-03, + 2DIAGNOSTIC, 7, -8.511123510499e-01, 1.797693134862e+308, 2.1060e-01, 1.2631e-03, + 2DIAGNOSTIC, 8, -8.616014376460e-01, 1.797693134862e+308, 2.1226e-01, 1.6611e-03, + 2DIAGNOSTIC, 9, -8.775870131393e-01, 1.797693134862e+308, 2.1413e-01, 1.8721e-03, + 2DIAGNOSTIC, 10, -8.820935942897e-01, 4.354347656798e-03, 2.1564e-01, 1.5061e-03, + 2DIAGNOSTIC, 11, -8.872454483023e-01, 4.513890952666e-03, 2.1691e-01, 1.2729e-03, + 2DIAGNOSTIC, 12, -8.931182035621e-01, 4.434393268962e-03, 2.1825e-01, 1.3449e-03, + 2DIAGNOSTIC, 13, -8.993720385551e-01, 4.149607684893e-03, 2.1994e-01, 1.6921e-03, + 2DIAGNOSTIC, 14, -9.078746344115e-01, 3.797497771384e-03, 2.2214e-01, 2.1961e-03, + 2DIAGNOSTIC, 15, -9.138568062954e-01, 3.389007225762e-03, 2.2426e-01, 2.1191e-03, + 2DIAGNOSTIC, 16, -9.215449825736e-01, 2.996237923075e-03, 2.2631e-01, 2.0471e-03, + 2DIAGNOSTIC, 17, -9.262412001731e-01, 2.610001453612e-03, 2.2875e-01, 2.4440e-03, + 2DIAGNOSTIC, 18, -9.285966233298e-01, 2.252932288218e-03, 2.3109e-01, 2.3348e-03, + 2DIAGNOSTIC, 19, -9.288211734019e-01, 2.003112709422e-03, 2.3330e-01, 2.2130e-03, + 2DIAGNOSTIC, 20, -9.287440297491e-01, 1.665102767654e-03, 2.3510e-01, 1.7998e-03, + 2DIAGNOSTIC, 21, -9.287829926333e-01, 1.284756360802e-03, 2.3683e-01, 1.7300e-03, + 2DIAGNOSTIC, 22, -9.287131775247e-01, 9.045351427001e-04, 2.3840e-01, 1.5709e-03, + 2DIAGNOSTIC, 23, -9.286729815649e-01, 5.597944384061e-04, 2.3979e-01, 1.3862e-03, + 2DIAGNOSTIC, 24, -9.292620733574e-01, 3.138432679658e-04, 2.4131e-01, 1.5290e-03, + 2DIAGNOSTIC, 25, -9.303915282872e-01, 1.481378346737e-04, 2.4299e-01, 1.6770e-03, + 2DIAGNOSTIC, 26, -9.309209459681e-01, 8.111127091572e-05, 2.4452e-01, 1.5249e-03, + 2DIAGNOSTIC, 27, -9.307145989675e-01, 6.399875350951e-05, 2.4647e-01, 1.9500e-03, + 2DIAGNOSTIC, 28, -9.321246361989e-01, 8.522777325252e-05, 2.4787e-01, 1.4050e-03, + 2DIAGNOSTIC, 29, -9.328990580986e-01, 1.074220850425e-04, 2.4942e-01, 1.5461e-03, + 2DIAGNOSTIC, 30, -9.348449121622e-01, 1.374025955521e-04, 2.5181e-01, 2.3930e-03, + 2DIAGNOSTIC, 31, -9.343274176113e-01, 1.473539976476e-04, 2.5325e-01, 1.4381e-03, + 2DIAGNOSTIC, 32, -9.359803332843e-01, 1.591644867316e-04, 2.5473e-01, 1.4839e-03, + 2DIAGNOSTIC, 33, -9.367514513193e-01, 1.618306553456e-04, 2.5621e-01, 1.4760e-03, + 2DIAGNOSTIC, 34, -9.381862312124e-01, 1.672278280934e-04, 2.5793e-01, 1.7240e-03, + 2DIAGNOSTIC, 35, -9.383629327544e-01, 1.679732356350e-04, 2.5942e-01, 1.4892e-03, + 2DIAGNOSTIC, 36, -9.387533618616e-01, 1.613267588170e-04, 2.6111e-01, 1.6909e-03, + 2DIAGNOSTIC, 37, -9.394642406262e-01, 1.439651762627e-04, 2.6284e-01, 1.7271e-03, + 2DIAGNOSTIC, 38, -9.398041942375e-01, 1.280210154028e-04, 2.6452e-01, 1.6751e-03, + 2DIAGNOSTIC, 39, -9.420496350814e-01, 1.246208103625e-04, 2.6669e-01, 2.1780e-03, + 2DIAGNOSTIC, 40, -9.414667028807e-01, 1.201909304477e-04, 2.6822e-01, 1.5290e-03, + 2DIAGNOSTIC, 41, -9.419722220605e-01, 1.046992668464e-04, 2.7002e-01, 1.8020e-03, + 2DIAGNOSTIC, 42, -9.434756404977e-01, 1.035374364407e-04, 2.7148e-01, 1.4601e-03, + 2DIAGNOSTIC, 43, -9.433577113564e-01, 9.667125053586e-05, 2.7288e-01, 1.3928e-03, + 2DIAGNOSTIC, 44, -9.435640009584e-01, 9.263543319843e-05, 2.7421e-01, 1.3318e-03, + 2DIAGNOSTIC, 45, -9.446003097443e-01, 8.854265387081e-05, 2.7560e-01, 1.3950e-03, + 2DIAGNOSTIC, 46, -9.448680447473e-01, 8.055510223004e-05, 2.7777e-01, 2.1610e-03, + 2DIAGNOSTIC, 47, -9.451269472801e-01, 7.163355196562e-05, 2.7906e-01, 1.2999e-03, + 2DIAGNOSTIC, 48, -9.452875881347e-01, 5.919602263069e-05, 2.8088e-01, 1.8120e-03, + 2DIAGNOSTIC, 49, -9.454462351966e-01, 5.720774695216e-05, 2.8232e-01, 1.4410e-03, + 2DIAGNOSTIC, 50, -9.455386597992e-01, 4.673905827749e-05, 2.8380e-01, 1.4820e-03, + 2DIAGNOSTIC, 51, -9.449772073227e-01, 3.164191439716e-05, 2.8528e-01, 1.4770e-03, + 2DIAGNOSTIC, 52, -9.452216948612e-01, 2.481896735987e-05, 2.8697e-01, 1.6899e-03, + 2DIAGNOSTIC, 53, -9.453407045291e-01, 1.591524693234e-05, 2.8875e-01, 1.7829e-03, + 2DIAGNOSTIC, 54, -9.462123158371e-01, 1.186552548404e-05, 2.9014e-01, 1.3859e-03, + 2DIAGNOSTIC, 55, -9.463533001041e-01, 1.339557710717e-05, 2.9149e-01, 1.3571e-03, + 2DIAGNOSTIC, 56, -9.468850604405e-01, 1.813503368738e-05, 2.9321e-01, 1.7140e-03, + 2DIAGNOSTIC, 57, -9.463609734821e-01, 1.956253851941e-05, 2.9521e-01, 1.9989e-03, + 2DIAGNOSTIC, 58, -9.475627760742e-01, 2.640370374839e-05, 2.9690e-01, 1.6990e-03, + 2DIAGNOSTIC, 59, -9.475810276781e-01, 3.117097206666e-05, 2.9872e-01, 1.8110e-03, + 2DIAGNOSTIC, 60, -9.475880802141e-01, 3.343991291880e-05, 3.0023e-01, 1.5180e-03, + 2DIAGNOSTIC, 61, -9.476053186158e-01, 2.981952495731e-05, 3.0178e-01, 1.5509e-03, + 2DIAGNOSTIC, 62, -9.490419730117e-01, 3.192654730824e-05, 3.0705e-01, 5.2700e-03, + 2DIAGNOSTIC, 63, -9.490419660012e-01, 3.116519565210e-05, 3.0854e-01, 1.4892e-03, + 2DIAGNOSTIC, 64, -9.490419821505e-01, 3.170912919429e-05, 3.1007e-01, 1.5280e-03, + 2DIAGNOSTIC, 65, -9.490420094520e-01, 3.000152538214e-05, 3.1148e-01, 1.4110e-03, + 2DIAGNOSTIC, 66, -9.490420555994e-01, 2.810103508768e-05, 3.1291e-01, 1.4288e-03, + 2DIAGNOSTIC, 67, -9.490421335792e-01, 2.092365194638e-05, 3.1439e-01, 1.4801e-03, + 2DIAGNOSTIC, 68, -9.490422652858e-01, 1.740904748393e-05, 3.1568e-01, 1.2898e-03, + 2DIAGNOSTIC, 69, -9.490424875550e-01, 1.255474915480e-05, 3.1706e-01, 1.3809e-03, + 2DIAGNOSTIC, 70, -9.490428621408e-01, 6.785020059019e-06, 3.1842e-01, 1.3552e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.029496572566e-01, 1.797693134862e+308, 5.3469e-01, 2.1627e-01, + 2DIAGNOSTIC, 2, -8.021860067353e-01, 1.797693134862e+308, 5.3685e-01, 2.1660e-03, + 2DIAGNOSTIC, 3, -8.028460168482e-01, 1.797693134862e+308, 5.3887e-01, 2.0151e-03, + 2DIAGNOSTIC, 4, -8.041089871934e-01, 1.797693134862e+308, 5.4088e-01, 2.0099e-03, + 2DIAGNOSTIC, 5, -8.052544126314e-01, 1.797693134862e+308, 5.4287e-01, 1.9901e-03, + 2DIAGNOSTIC, 6, -8.067801091612e-01, 1.797693134862e+308, 5.4490e-01, 2.0342e-03, + 2DIAGNOSTIC, 7, -8.072348369869e-01, 1.797693134862e+308, 5.4710e-01, 2.1989e-03, + 2DIAGNOSTIC, 8, -8.078839339237e-01, 1.797693134862e+308, 5.5209e-01, 4.9860e-03, + 2DIAGNOSTIC, 9, -8.080078877796e-01, 1.797693134862e+308, 5.5409e-01, 2.0080e-03, + 2DIAGNOSTIC, 10, -8.080352264689e-01, 5.472470851659e-04, 5.5635e-01, 2.2600e-03, + 2DIAGNOSTIC, 11, -8.079026316662e-01, 4.611250341399e-04, 5.5848e-01, 2.1260e-03, + 2DIAGNOSTIC, 12, -8.079776641314e-01, 3.282301836853e-04, 5.6093e-01, 2.4500e-03, + 2DIAGNOSTIC, 13, -8.078597324332e-01, 2.007642579443e-04, 5.6336e-01, 2.4321e-03, + 2DIAGNOSTIC, 14, -8.077418686836e-01, 1.021306127532e-04, 5.6556e-01, 2.1939e-03, + 2DIAGNOSTIC, 15, -8.076592727766e-01, 3.194647960067e-05, 5.6776e-01, 2.1999e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.582681825885e-01, 1.797693134862e+308, 7.9555e-01, 2.2779e-01, + 2DIAGNOSTIC, 2, -6.604012500227e-01, 1.797693134862e+308, 8.0845e-01, 1.2899e-02, + 2DIAGNOSTIC, 3, -6.633557368898e-01, 1.797693134862e+308, 8.2113e-01, 1.2679e-02, + 2DIAGNOSTIC, 4, -6.667846269298e-01, 1.797693134862e+308, 8.3447e-01, 1.3347e-02, + 2DIAGNOSTIC, 5, -6.700290948766e-01, 1.797693134862e+308, 8.4739e-01, 1.2913e-02, + 2DIAGNOSTIC, 6, -6.733406113552e-01, 1.797693134862e+308, 8.6114e-01, 1.3758e-02, + 2DIAGNOSTIC, 7, -6.769271846820e-01, 1.797693134862e+308, 8.7579e-01, 1.4645e-02, + 2DIAGNOSTIC, 8, -6.801457165723e-01, 1.797693134862e+308, 8.9059e-01, 1.4798e-02, + 2DIAGNOSTIC, 9, -6.808834840336e-01, 1.797693134862e+308, 9.1627e-01, 2.5680e-02, + 2DIAGNOSTIC, 10, -6.808917172571e-01, 2.442011730104e-03, 9.3135e-01, 1.5083e-02, + 2DIAGNOSTIC, 11, -6.810209456738e-01, 1.969664767288e-03, 9.4637e-01, 1.5018e-02, + 2DIAGNOSTIC, 12, -6.811161480978e-01, 1.476926817723e-03, 9.6225e-01, 1.5878e-02, + 2DIAGNOSTIC, 13, -6.810545462931e-01, 1.019311643964e-03, 9.7752e-01, 1.5271e-02, + 2DIAGNOSTIC, 14, -6.810446474472e-01, 6.380373276946e-04, 9.9264e-01, 1.5127e-02, + 2DIAGNOSTIC, 15, -6.810141070217e-01, 3.403509761847e-04, 1.0077e+00, 1.5086e-02, + 2DIAGNOSTIC, 16, -6.810216408998e-01, 1.351426138088e-04, 1.0231e+00, 1.5352e-02, + 2DIAGNOSTIC, 17, -6.810372122188e-01, 2.909946058634e-05, 1.0390e+00, 1.5882e-02, + 2DIAGNOSTIC, 18, -6.810319213998e-01, 7.081891200661e-06, 1.0522e+00, 1.3270e-02, + 2DIAGNOSTIC, 19, -6.810337072931e-01, 3.363476255555e-06, 1.0654e+00, 1.3139e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.712500271967e-01, 1.797693134862e+308, 1.4980e+00, 4.3263e-01, + 2DIAGNOSTIC, 2, -5.721322949650e-01, 1.797693134862e+308, 1.5901e+00, 9.2104e-02, + 2DIAGNOSTIC, 3, -5.730264728166e-01, 1.797693134862e+308, 1.6767e+00, 8.6586e-02, + 2DIAGNOSTIC, 4, -5.736902135228e-01, 1.797693134862e+308, 1.7595e+00, 8.2807e-02, + 2DIAGNOSTIC, 5, -5.742640103722e-01, 1.797693134862e+308, 1.8509e+00, 9.1411e-02, + 2DIAGNOSTIC, 6, -5.747682329797e-01, 1.797693134862e+308, 1.9579e+00, 1.0697e-01, + 2DIAGNOSTIC, 7, -5.753633252086e-01, 1.797693134862e+308, 2.1284e+00, 1.7056e-01, + 2DIAGNOSTIC, 8, -5.753649533194e-01, 1.797693134862e+308, 2.2110e+00, 8.2557e-02, + 2DIAGNOSTIC, 9, -5.753766511480e-01, 1.797693134862e+308, 2.3027e+00, 9.1670e-02, + 2DIAGNOSTIC, 10, -5.753975024506e-01, 4.729190558441e-04, 2.3868e+00, 8.4139e-02, + 2DIAGNOSTIC, 11, -5.754281211973e-01, 3.252396717482e-04, 2.4915e+00, 1.0465e-01, + 2DIAGNOSTIC, 12, -5.754558459271e-01, 2.100011406578e-04, 2.6195e+00, 1.2809e-01, + 2DIAGNOSTIC, 13, -5.754694784284e-01, 1.281201077667e-04, 2.7353e+00, 1.1571e-01, + 2DIAGNOSTIC, 14, -5.754690981328e-01, 6.996850443475e-05, 2.8476e+00, 1.1237e-01, + 2DIAGNOSTIC, 15, -5.754898404630e-01, 3.277556467214e-05, 2.9445e+00, 9.6919e-02, + 2DIAGNOSTIC, 16, -5.755181775645e-01, 1.333791399391e-05, 3.0586e+00, 1.1405e-01, + 2DIAGNOSTIC, 17, -5.755352539729e-01, 1.293360427571e-05, 3.1558e+00, 9.7198e-02, + 2DIAGNOSTIC, 18, -5.755340549050e-01, 1.157198149784e-05, 3.3135e+00, 1.5770e-01, + 2DIAGNOSTIC, 19, -5.755379217435e-01, 9.871575518051e-06, 3.4099e+00, 9.6374e-02, + 2DIAGNOSTIC, 20, -5.755374368145e-01, 8.068081140421e-06, 3.5052e+00, 9.5369e-02, + 2DIAGNOSTIC, 21, -5.755366001672e-01, 6.505933281484e-06, 3.5889e+00, 8.3687e-02, + 2DIAGNOSTIC, 22, -5.755346211826e-01, 5.190512451854e-06, 3.6846e+00, 9.5703e-02, + 2DIAGNOSTIC, 23, -5.755360672431e-01, 3.978659433662e-06, 3.7931e+00, 1.0845e-01, + 2DIAGNOSTIC, 24, -5.755332353912e-01, 2.556275835786e-06, 3.8892e+00, 9.6083e-02, + 2DIAGNOSTIC, 25, -5.755337439886e-01, 1.541426091982e-06, 3.9725e+00, 8.3334e-02, + 2DIAGNOSTIC, 26, -5.755327926140e-01, 1.091789419962e-06, 4.0613e+00, 8.8770e-02, + 2DIAGNOSTIC, 27, -5.755342483060e-01, 1.028955119414e-06, 4.1659e+00, 1.0464e-01, + Elapsed time (stage 1): 4.2884e+00 + + +Total elapsed time: 9.4220e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:22:02 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:22:03 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5594629214f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 47.1306, -128.664] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559462926fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f179d3cc010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x559462922850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 47.1306, -128.664] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55946291ff30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f1799d0d010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x559462939b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 47.1306, -128.664] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x559462926550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f179664e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55946293ed70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 47.1306, -128.664] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55946293cc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f1792f8f010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x559462940f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 47.1306, -128.664] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55946293f3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f178f8d0010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x559462941540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [105.551, 47.1306, -128.664] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5594629414d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f178c211010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.526809858301e-01, 1.797693134862e+308, 2.1909e-01, 2.1909e-01, + 2DIAGNOSTIC, 2, -6.555419098972e-01, 1.797693134862e+308, 2.2132e-01, 2.2261e-03, + 2DIAGNOSTIC, 3, -6.596532100993e-01, 1.797693134862e+308, 2.2346e-01, 2.1460e-03, + 2DIAGNOSTIC, 4, -6.639226652716e-01, 1.797693134862e+308, 2.2561e-01, 2.1510e-03, + 2DIAGNOSTIC, 5, -6.670672515874e-01, 1.797693134862e+308, 2.2813e-01, 2.5120e-03, + 2DIAGNOSTIC, 6, -6.677409069849e-01, 1.797693134862e+308, 2.3021e-01, 2.0881e-03, + 2DIAGNOSTIC, 7, -6.685620897105e-01, 1.797693134862e+308, 2.3212e-01, 1.9009e-03, + 2DIAGNOSTIC, 8, -6.694906982209e-01, 1.797693134862e+308, 2.3449e-01, 2.3751e-03, + 2DIAGNOSTIC, 9, -6.695751651401e-01, 1.797693134862e+308, 2.3632e-01, 1.8289e-03, + 2DIAGNOSTIC, 10, -6.696416215558e-01, 1.646043848076e-03, 2.3866e-01, 2.3379e-03, + 2DIAGNOSTIC, 11, -6.701516342138e-01, 1.113133675518e-03, 2.4090e-01, 2.2478e-03, + 2DIAGNOSTIC, 12, -6.706856153263e-01, 6.893138154487e-04, 2.4318e-01, 2.2709e-03, + 2DIAGNOSTIC, 13, -6.704832338869e-01, 3.942740996660e-04, 2.4541e-01, 2.2349e-03, + 2DIAGNOSTIC, 14, -6.704864057186e-01, 2.346778033445e-04, 2.4766e-01, 2.2531e-03, + 2DIAGNOSTIC, 15, -6.704986615240e-01, 1.652822798092e-04, 2.4999e-01, 2.3229e-03, + 2DIAGNOSTIC, 16, -6.704005433994e-01, 1.043137288367e-04, 2.5200e-01, 2.0151e-03, + 2DIAGNOSTIC, 17, -6.704399504355e-01, 6.191951976535e-05, 2.5401e-01, 2.0049e-03, + 2DIAGNOSTIC, 18, -6.705430385734e-01, 4.327556943106e-05, 2.5629e-01, 2.2860e-03, + 2DIAGNOSTIC, 19, -6.708653818361e-01, 3.209162143496e-05, 2.5967e-01, 3.3729e-03, + 2DIAGNOSTIC, 20, -6.707333036026e-01, 1.741242696384e-05, 2.6181e-01, 2.1398e-03, + 2DIAGNOSTIC, 21, -6.707492887508e-01, 1.318792096608e-05, 2.6420e-01, 2.3990e-03, + 2DIAGNOSTIC, 22, -6.708948302838e-01, 2.157179416561e-05, 2.6660e-01, 2.3980e-03, + 2DIAGNOSTIC, 23, -6.712846498851e-01, 3.060888634886e-05, 2.6902e-01, 2.4180e-03, + 2DIAGNOSTIC, 24, -6.712448312825e-01, 3.522918878398e-05, 2.7252e-01, 3.5040e-03, + 2DIAGNOSTIC, 25, -6.714155620701e-01, 3.964891491139e-05, 2.7500e-01, 2.4760e-03, + 2DIAGNOSTIC, 26, -6.713932661206e-01, 3.824821469570e-05, 2.7708e-01, 2.0840e-03, + 2DIAGNOSTIC, 27, -6.711113995597e-01, 2.959801898229e-05, 2.7942e-01, 2.3391e-03, + 2DIAGNOSTIC, 28, -6.710388405112e-01, 1.924611901640e-05, 2.8156e-01, 2.1341e-03, + 2DIAGNOSTIC, 29, -6.709658936794e-01, 1.160420857663e-05, 2.8373e-01, 2.1689e-03, + 2DIAGNOSTIC, 30, -6.710160644905e-01, 2.343059458600e-06, 2.8584e-01, 2.1181e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.441123273896e-01, 1.797693134862e+308, 5.1399e-01, 2.2815e-01, + 2DIAGNOSTIC, 2, -5.454463118402e-01, 1.797693134862e+308, 5.2751e-01, 1.3518e-02, + 2DIAGNOSTIC, 3, -5.469451052532e-01, 1.797693134862e+308, 5.4099e-01, 1.3480e-02, + 2DIAGNOSTIC, 4, -5.481854511837e-01, 1.797693134862e+308, 5.5428e-01, 1.3286e-02, + 2DIAGNOSTIC, 5, -5.491113405576e-01, 1.797693134862e+308, 5.6895e-01, 1.4673e-02, + 2DIAGNOSTIC, 6, -5.495382971991e-01, 1.797693134862e+308, 5.8214e-01, 1.3194e-02, + 2DIAGNOSTIC, 7, -5.498005611883e-01, 1.797693134862e+308, 5.9936e-01, 1.7216e-02, + 2DIAGNOSTIC, 8, -5.502168348856e-01, 1.797693134862e+308, 6.2165e-01, 2.2289e-02, + 2DIAGNOSTIC, 9, -5.502246726525e-01, 1.797693134862e+308, 6.3475e-01, 1.3100e-02, + 2DIAGNOSTIC, 10, -5.503735696657e-01, 7.058027880812e-04, 6.5055e-01, 1.5799e-02, + 2DIAGNOSTIC, 11, -5.504954312608e-01, 4.755421840850e-04, 6.6604e-01, 1.5492e-02, + 2DIAGNOSTIC, 12, -5.505228061750e-01, 2.992166555797e-04, 6.8170e-01, 1.5657e-02, + 2DIAGNOSTIC, 13, -5.505494663545e-01, 1.831972002633e-04, 6.9552e-01, 1.3828e-02, + 2DIAGNOSTIC, 14, -5.506244348537e-01, 1.153616487843e-04, 7.1066e-01, 1.5137e-02, + 2DIAGNOSTIC, 15, -5.508268080215e-01, 8.497212774843e-05, 7.2456e-01, 1.3893e-02, + 2DIAGNOSTIC, 16, -5.508475234076e-01, 6.496625797985e-05, 7.4193e-01, 1.7373e-02, + 2DIAGNOSTIC, 17, -5.511243793997e-01, 5.770523629085e-05, 7.5831e-01, 1.6385e-02, + 2DIAGNOSTIC, 18, -5.512223492743e-01, 6.082664228269e-05, 8.0496e-01, 4.6646e-02, + 2DIAGNOSTIC, 19, -5.512223464315e-01, 5.826198782131e-05, 8.1909e-01, 1.4135e-02, + 2DIAGNOSTIC, 20, -5.512223550991e-01, 5.452636179563e-05, 8.3341e-01, 1.4316e-02, + 2DIAGNOSTIC, 21, -5.512223697666e-01, 4.922280688273e-05, 8.4787e-01, 1.4465e-02, + 2DIAGNOSTIC, 22, -5.512223945761e-01, 4.055361046476e-05, 8.6205e-01, 1.4173e-02, + 2DIAGNOSTIC, 23, -5.512224364999e-01, 2.953559388317e-05, 8.7612e-01, 1.4072e-02, + 2DIAGNOSTIC, 24, -5.512225072791e-01, 1.838522329528e-05, 8.9007e-01, 1.3948e-02, + 2DIAGNOSTIC, 25, -5.512226266423e-01, 1.080305678485e-05, 9.0432e-01, 1.4249e-02, + 2DIAGNOSTIC, 26, -5.512228275597e-01, 3.190730032285e-06, 9.1833e-01, 1.4015e-02, + 2DIAGNOSTIC, 27, -5.512231646888e-01, 1.209328588457e-06, 9.3174e-01, 1.3410e-02, + 2DIAGNOSTIC, 28, -5.512237278009e-01, 1.185102328334e-06, 9.4675e-01, 1.5012e-02, + 2DIAGNOSTIC, 29, -5.512246611188e-01, 1.174534647159e-06, 9.6026e-01, 1.3504e-02, + 2DIAGNOSTIC, 30, -5.512261885407e-01, 1.183698389348e-06, 9.7337e-01, 1.3114e-02, + 2DIAGNOSTIC, 31, -5.512285999833e-01, 1.220754779395e-06, 9.8743e-01, 1.4063e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.623710271853e-01, 1.797693134862e+308, 1.3895e+00, 4.0202e-01, + 2DIAGNOSTIC, 2, -4.630414669517e-01, 1.797693134862e+308, 1.4839e+00, 9.4441e-02, + 2DIAGNOSTIC, 3, -4.635902720358e-01, 1.797693134862e+308, 1.5794e+00, 9.5548e-02, + 2DIAGNOSTIC, 4, -4.638131734662e-01, 1.797693134862e+308, 1.6723e+00, 9.2899e-02, + 2DIAGNOSTIC, 5, -4.638604779844e-01, 1.797693134862e+308, 1.7663e+00, 9.3989e-02, + 2DIAGNOSTIC, 6, -4.639848370884e-01, 1.797693134862e+308, 1.9658e+00, 1.9946e-01, + 2DIAGNOSTIC, 7, -4.639827602678e-01, 1.797693134862e+308, 2.0656e+00, 9.9842e-02, + 2DIAGNOSTIC, 8, -4.639801189806e-01, 1.797693134862e+308, 2.1894e+00, 1.2373e-01, + 2DIAGNOSTIC, 9, -4.639781246232e-01, 1.797693134862e+308, 2.3040e+00, 1.1460e-01, + 2DIAGNOSTIC, 10, -4.639770624574e-01, 1.746749882072e-04, 2.4233e+00, 1.1935e-01, + 2DIAGNOSTIC, 11, -4.639758883893e-01, 8.333425550260e-05, 2.5174e+00, 9.4140e-02, + 2DIAGNOSTIC, 12, -4.639734984549e-01, 3.348491492626e-05, 2.6142e+00, 9.6791e-02, + 2DIAGNOSTIC, 13, -4.639738796066e-01, 1.424171444162e-05, 2.7114e+00, 9.7199e-02, + 2DIAGNOSTIC, 14, -4.639732095877e-01, 6.410274132035e-06, 2.8068e+00, 9.5354e-02, + 2DIAGNOSTIC, 15, -4.639755882834e-01, 1.127756137323e-06, 2.9135e+00, 1.0668e-01, + 2DIAGNOSTIC, 16, -4.639755406395e-01, 1.356634603253e-06, 3.0208e+00, 1.0731e-01, + 2DIAGNOSTIC, 17, -4.639750421607e-01, 1.527443736701e-06, 3.1420e+00, 1.2124e-01, + 2DIAGNOSTIC, 18, -4.639740540248e-01, 1.590350013958e-06, 3.2474e+00, 1.0541e-01, + 2DIAGNOSTIC, 19, -4.639731239176e-01, 1.568757707925e-06, 3.3554e+00, 1.0800e-01, + 2DIAGNOSTIC, 20, -4.639720921607e-01, 1.494421328532e-06, 3.4493e+00, 9.3848e-02, + 2DIAGNOSTIC, 21, -4.639712520562e-01, 1.379093547631e-06, 3.5406e+00, 9.1360e-02, + 2DIAGNOSTIC, 22, -4.639720444016e-01, 1.243262831109e-06, 3.6331e+00, 9.2460e-02, + 2DIAGNOSTIC, 23, -4.639707230088e-01, 1.113722107149e-06, 3.7219e+00, 8.8832e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.025272391528e-01, 1.797693134862e+308, 4.8702e+00, 1.1483e+00, + 2DIAGNOSTIC, 2, -4.028854242878e-01, 1.797693134862e+308, 5.5486e+00, 6.7839e-01, + 2DIAGNOSTIC, 3, -4.028845405175e-01, 1.797693134862e+308, 6.4164e+00, 8.6780e-01, + 2DIAGNOSTIC, 4, -4.028837205991e-01, 1.797693134862e+308, 7.3040e+00, 8.8757e-01, + 2DIAGNOSTIC, 5, -4.028835860027e-01, 1.797693134862e+308, 7.9268e+00, 6.2285e-01, + 2DIAGNOSTIC, 6, -4.028834128596e-01, 1.797693134862e+308, 8.5557e+00, 6.2884e-01, + 2DIAGNOSTIC, 7, -4.028833794155e-01, 1.797693134862e+308, 9.1180e+00, 5.6230e-01, + 2DIAGNOSTIC, 8, -4.028831683762e-01, 1.797693134862e+308, 9.7220e+00, 6.0405e-01, + 2DIAGNOSTIC, 9, -4.028832187231e-01, 1.797693134862e+308, 1.0267e+01, 5.4544e-01, + 2DIAGNOSTIC, 10, -4.028830243223e-01, 2.806486349205e-05, 1.0883e+01, 6.1531e-01, + 2DIAGNOSTIC, 11, -4.028828199947e-01, 2.604609915677e-06, 1.1495e+01, 6.1246e-01, + 2DIAGNOSTIC, 12, -4.028828864839e-01, 2.476958308142e-06, 1.2044e+01, 5.4871e-01, + 2DIAGNOSTIC, 13, -4.028825099459e-01, 2.317084634940e-06, 1.2616e+01, 5.7174e-01, + 2DIAGNOSTIC, 14, -4.028824211965e-01, 2.146580474358e-06, 1.3140e+01, 5.2443e-01, + 2DIAGNOSTIC, 15, -4.028823677211e-01, 2.001632680160e-06, 1.3752e+01, 6.1211e-01, + 2DIAGNOSTIC, 16, -4.028824312026e-01, 1.880784209554e-06, 1.4358e+01, 6.0592e-01, + 2DIAGNOSTIC, 17, -4.028823323957e-01, 1.778584018744e-06, 1.4899e+01, 5.4089e-01, + 2DIAGNOSTIC, 18, -4.028822620144e-01, 1.685351931832e-06, 1.5444e+01, 5.4450e-01, + 2DIAGNOSTIC, 19, -4.028822399411e-01, 1.610918396296e-06, 1.6055e+01, 6.1136e-01, + 2DIAGNOSTIC, 20, -4.028818478300e-01, 1.529117762529e-06, 1.6758e+01, 7.0304e-01, + 2DIAGNOSTIC, 21, -4.028817642380e-01, 1.451207104257e-06, 1.7311e+01, 5.5331e-01, + 2DIAGNOSTIC, 22, -4.028815798737e-01, 1.382791166210e-06, 1.7917e+01, 6.0551e-01, + 2DIAGNOSTIC, 23, -4.028813703648e-01, 1.308334781479e-06, 1.8453e+01, 5.3655e-01, + 2DIAGNOSTIC, 24, -4.028813497225e-01, 1.244028385937e-06, 1.9060e+01, 6.0680e-01, + 2DIAGNOSTIC, 25, -4.028814149707e-01, 1.192786318070e-06, 1.9568e+01, 5.0773e-01, + 2DIAGNOSTIC, 26, -4.028812458716e-01, 1.150103167653e-06, 2.0229e+01, 6.6107e-01, + 2DIAGNOSTIC, 27, -4.028813061126e-01, 1.116613980438e-06, 2.0834e+01, 6.0474e-01, + 2DIAGNOSTIC, 28, -4.028812051555e-01, 1.086910177098e-06, 2.1408e+01, 5.7471e-01, + 2DIAGNOSTIC, 29, -4.028810904312e-01, 1.060791373339e-06, 2.1941e+01, 5.3289e-01, + 2DIAGNOSTIC, 30, -4.028809668216e-01, 1.027689397470e-06, 2.2414e+01, 4.7248e-01, + Elapsed time (stage 0): 2.2767e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.577875438396e-01, 1.797693134862e+308, 1.8481e-01, 1.8481e-01, + 2DIAGNOSTIC, 2, -6.595252864099e-01, 1.797693134862e+308, 1.8668e-01, 1.8709e-03, + 2DIAGNOSTIC, 3, -6.621102995054e-01, 1.797693134862e+308, 1.8854e-01, 1.8539e-03, + 2DIAGNOSTIC, 4, -6.649848182798e-01, 1.797693134862e+308, 1.9041e-01, 1.8709e-03, + 2DIAGNOSTIC, 5, -6.671859663805e-01, 1.797693134862e+308, 1.9234e-01, 1.9360e-03, + 2DIAGNOSTIC, 6, -6.683726021056e-01, 1.797693134862e+308, 1.9451e-01, 2.1639e-03, + 2DIAGNOSTIC, 7, -6.691082764575e-01, 1.797693134862e+308, 1.9721e-01, 2.7049e-03, + 2DIAGNOSTIC, 8, -6.691766900702e-01, 1.797693134862e+308, 1.9910e-01, 1.8868e-03, + 2DIAGNOSTIC, 9, -6.693799788990e-01, 1.797693134862e+308, 2.0114e-01, 2.0390e-03, + 2DIAGNOSTIC, 10, -6.694887418460e-01, 1.172656208284e-03, 2.0374e-01, 2.5978e-03, + 2DIAGNOSTIC, 11, -6.695846837586e-01, 8.036242842928e-04, 2.0611e-01, 2.3720e-03, + 2DIAGNOSTIC, 12, -6.697238846522e-01, 4.906657231484e-04, 2.0873e-01, 2.6200e-03, + 2DIAGNOSTIC, 13, -6.699930363342e-01, 2.742411934289e-04, 2.1222e-01, 3.4919e-03, + 2DIAGNOSTIC, 14, -6.700022565970e-01, 1.506044402978e-04, 2.1496e-01, 2.7349e-03, + 2DIAGNOSTIC, 15, -6.700144753753e-01, 9.223533711976e-05, 2.1771e-01, 2.7552e-03, + 2DIAGNOSTIC, 16, -6.700306918902e-01, 6.454295772840e-05, 2.2057e-01, 2.8570e-03, + 2DIAGNOSTIC, 17, -6.700530034112e-01, 5.330981327165e-05, 2.2317e-01, 2.6021e-03, + 2DIAGNOSTIC, 18, -6.700595872369e-01, 4.015674516624e-05, 2.2604e-01, 2.8720e-03, + 2DIAGNOSTIC, 19, -6.700617471730e-01, 2.942687667649e-05, 2.2867e-01, 2.6300e-03, + 2DIAGNOSTIC, 20, -6.700637731676e-01, 1.962535179970e-05, 2.3127e-01, 2.5930e-03, + 2DIAGNOSTIC, 21, -6.700644581082e-01, 1.102007119586e-05, 2.3350e-01, 2.2390e-03, + 2DIAGNOSTIC, 22, -6.700648841972e-01, 4.861235301371e-06, 2.3664e-01, 3.1371e-03, + 2DIAGNOSTIC, 23, -6.700651325048e-01, 3.902465641498e-06, 2.3889e-01, 2.2521e-03, + 2DIAGNOSTIC, 24, -6.700660253989e-01, 2.969924704908e-06, 2.4157e-01, 2.6720e-03, + 2DIAGNOSTIC, 25, -6.700665370614e-01, 2.172151095138e-06, 2.4474e-01, 3.1722e-03, + 2DIAGNOSTIC, 26, -6.700669704053e-01, 1.614993297747e-06, 2.4792e-01, 3.1791e-03, + 2DIAGNOSTIC, 27, -6.700677588859e-01, 1.424330832007e-06, 2.5110e-01, 3.1822e-03, + 2DIAGNOSTIC, 28, -6.700683890539e-01, 1.333240194974e-06, 2.5494e-01, 3.8440e-03, + 2DIAGNOSTIC, 29, -6.700685937675e-01, 1.263834064298e-06, 2.5729e-01, 2.3439e-03, + 2DIAGNOSTIC, 30, -6.700687308028e-01, 1.214035813150e-06, 2.5959e-01, 2.3000e-03, + 2DIAGNOSTIC, 31, -6.702035312085e-01, 3.010807367677e-06, 2.6226e-01, 2.6689e-03, + 2DIAGNOSTIC, 32, -6.702043752346e-01, 4.472855166790e-06, 2.6485e-01, 2.5909e-03, + 2DIAGNOSTIC, 33, -6.702044808006e-01, 5.541201404002e-06, 2.6770e-01, 2.8489e-03, + 2DIAGNOSTIC, 34, -6.702046765444e-01, 6.153360562422e-06, 2.6997e-01, 2.2750e-03, + 2DIAGNOSTIC, 35, -6.702048889450e-01, 6.237680872958e-06, 2.7223e-01, 2.2559e-03, + 2DIAGNOSTIC, 36, -6.702051727894e-01, 5.792183265668e-06, 2.7445e-01, 2.2199e-03, + 2DIAGNOSTIC, 37, -6.702058751956e-01, 4.914803281922e-06, 2.7701e-01, 2.5651e-03, + 2DIAGNOSTIC, 38, -6.702066429654e-01, 3.737616639243e-06, 2.8094e-01, 3.9239e-03, + 2DIAGNOSTIC, 39, -6.703410626266e-01, 3.828794559676e-06, 2.8421e-01, 3.2759e-03, + 2DIAGNOSTIC, 40, -6.703410644734e-01, 3.548083342894e-06, 2.8688e-01, 2.6650e-03, + 2DIAGNOSTIC, 41, -6.703410654990e-01, 4.431881046756e-06, 2.8948e-01, 2.6000e-03, + 2DIAGNOSTIC, 42, -6.703410664484e-01, 4.955144834454e-06, 2.9211e-01, 2.6300e-03, + 2DIAGNOSTIC, 43, -6.703410670444e-01, 5.049031523506e-06, 2.9483e-01, 2.7282e-03, + 2DIAGNOSTIC, 44, -6.703410676012e-01, 4.706930168779e-06, 2.9731e-01, 2.4772e-03, + 2DIAGNOSTIC, 45, -6.703410684104e-01, 3.996530959706e-06, 2.9975e-01, 2.4419e-03, + 2DIAGNOSTIC, 46, -6.703410704850e-01, 3.025206851231e-06, 3.0235e-01, 2.6000e-03, + 2DIAGNOSTIC, 47, -6.703410790595e-01, 1.892869637331e-06, 3.0497e-01, 2.6190e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.488022115995e-01, 1.797693134862e+308, 5.0998e-01, 2.0501e-01, + 2DIAGNOSTIC, 2, -5.496526968615e-01, 1.797693134862e+308, 5.2226e-01, 1.2278e-02, + 2DIAGNOSTIC, 3, -5.505074276533e-01, 1.797693134862e+308, 5.3532e-01, 1.3066e-02, + 2DIAGNOSTIC, 4, -5.511397605560e-01, 1.797693134862e+308, 5.4942e-01, 1.4094e-02, + 2DIAGNOSTIC, 5, -5.514751637766e-01, 1.797693134862e+308, 5.6350e-01, 1.4086e-02, + 2DIAGNOSTIC, 6, -5.517839275967e-01, 1.797693134862e+308, 5.7756e-01, 1.4054e-02, + 2DIAGNOSTIC, 7, -5.520848704617e-01, 1.797693134862e+308, 5.9541e-01, 1.7847e-02, + 2DIAGNOSTIC, 8, -5.524090828096e-01, 1.797693134862e+308, 6.1136e-01, 1.5956e-02, + 2DIAGNOSTIC, 9, -5.526531652448e-01, 1.797693134862e+308, 6.2755e-01, 1.6185e-02, + 2DIAGNOSTIC, 10, -5.527858823372e-01, 4.378668525044e-04, 6.4504e-01, 1.7494e-02, + 2DIAGNOSTIC, 11, -5.529900516154e-01, 3.250446052452e-04, 6.6170e-01, 1.6658e-02, + 2DIAGNOSTIC, 12, -5.530628590832e-01, 2.410136605357e-04, 6.7750e-01, 1.5797e-02, + 2DIAGNOSTIC, 13, -5.530919720904e-01, 1.828907156968e-04, 6.9442e-01, 1.6921e-02, + 2DIAGNOSTIC, 14, -5.531085105635e-01, 1.404478213386e-04, 7.0865e-01, 1.4233e-02, + 2DIAGNOSTIC, 15, -5.531432646130e-01, 1.036751417336e-04, 7.2295e-01, 1.4297e-02, + 2DIAGNOSTIC, 16, -5.531661573545e-01, 7.270039086128e-05, 7.3722e-01, 1.4276e-02, + 2DIAGNOSTIC, 17, -5.531960899764e-01, 4.869854777879e-05, 7.5609e-01, 1.8872e-02, + 2DIAGNOSTIC, 18, -5.532430512789e-01, 3.357486118843e-05, 7.7556e-01, 1.9469e-02, + 2DIAGNOSTIC, 19, -5.532585478699e-01, 2.409628559467e-05, 7.8950e-01, 1.3939e-02, + 2DIAGNOSTIC, 20, -5.532739013284e-01, 1.717536522978e-05, 8.0390e-01, 1.4398e-02, + 2DIAGNOSTIC, 21, -5.532919314665e-01, 1.486943096828e-05, 8.1805e-01, 1.4148e-02, + 2DIAGNOSTIC, 22, -5.533269662189e-01, 1.402779352918e-05, 8.3610e-01, 1.8050e-02, + 2DIAGNOSTIC, 23, -5.533299727759e-01, 1.277474277539e-05, 8.5954e-01, 2.3441e-02, + 2DIAGNOSTIC, 24, -5.533264057267e-01, 1.083468685242e-05, 8.7429e-01, 1.4750e-02, + 2DIAGNOSTIC, 25, -5.533283359080e-01, 8.928625531646e-06, 8.8881e-01, 1.4518e-02, + 2DIAGNOSTIC, 26, -5.533309332282e-01, 6.942347137689e-06, 9.0384e-01, 1.5030e-02, + 2DIAGNOSTIC, 27, -5.533338328876e-01, 5.158270224945e-06, 9.1827e-01, 1.4431e-02, + 2DIAGNOSTIC, 28, -5.533363059122e-01, 4.031847967434e-06, 9.3276e-01, 1.4497e-02, + 2DIAGNOSTIC, 29, -5.533375327374e-01, 3.013532598017e-06, 9.4633e-01, 1.3569e-02, + 2DIAGNOSTIC, 30, -5.533268973509e-01, 1.962454217130e-06, 9.6577e-01, 1.9438e-02, + 2DIAGNOSTIC, 31, -5.533269875830e-01, 1.182528768455e-06, 9.8218e-01, 1.6405e-02, + 2DIAGNOSTIC, 32, -5.533274323662e-01, 1.002459198124e-06, 9.9633e-01, 1.4151e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.649943523783e-01, 1.797693134862e+308, 1.4142e+00, 4.1788e-01, + 2DIAGNOSTIC, 2, -4.656846469730e-01, 1.797693134862e+308, 1.5143e+00, 1.0005e-01, + 2DIAGNOSTIC, 3, -4.662015602663e-01, 1.797693134862e+308, 1.6166e+00, 1.0239e-01, + 2DIAGNOSTIC, 4, -4.664166072521e-01, 1.797693134862e+308, 1.7176e+00, 1.0093e-01, + 2DIAGNOSTIC, 5, -4.664953025274e-01, 1.797693134862e+308, 1.8186e+00, 1.0105e-01, + 2DIAGNOSTIC, 6, -4.665855689095e-01, 1.797693134862e+308, 1.9177e+00, 9.9047e-02, + 2DIAGNOSTIC, 7, -4.667536935497e-01, 1.797693134862e+308, 2.0181e+00, 1.0047e-01, + 2DIAGNOSTIC, 8, -4.668505209882e-01, 1.797693134862e+308, 2.2008e+00, 1.8269e-01, + 2DIAGNOSTIC, 9, -4.668644028117e-01, 1.797693134862e+308, 2.3146e+00, 1.1376e-01, + 2DIAGNOSTIC, 10, -4.668659628115e-01, 2.183124954832e-04, 2.4178e+00, 1.0316e-01, + 2DIAGNOSTIC, 11, -4.668736005562e-01, 1.290494608646e-04, 2.5176e+00, 9.9824e-02, + 2DIAGNOSTIC, 12, -4.668959595448e-01, 7.881659865200e-05, 2.6192e+00, 1.0158e-01, + 2DIAGNOSTIC, 13, -4.669395249475e-01, 5.540023393703e-05, 2.7320e+00, 1.1281e-01, + 2DIAGNOSTIC, 14, -4.669489462132e-01, 4.029560618152e-05, 2.8340e+00, 1.0200e-01, + 2DIAGNOSTIC, 15, -4.669866012173e-01, 2.852274736451e-05, 2.9624e+00, 1.2844e-01, + 2DIAGNOSTIC, 16, -4.670035424549e-01, 1.973486435955e-05, 3.0760e+00, 1.1359e-01, + 2DIAGNOSTIC, 17, -4.670066990624e-01, 1.637641814416e-05, 3.2174e+00, 1.4139e-01, + 2DIAGNOSTIC, 18, -4.670059637878e-01, 1.529020177558e-05, 3.3321e+00, 1.1474e-01, + 2DIAGNOSTIC, 19, -4.670038449747e-01, 1.345158474941e-05, 3.4868e+00, 1.5468e-01, + 2DIAGNOSTIC, 20, -4.670038526550e-01, 1.075441138408e-05, 3.8325e+00, 3.4575e-01, + 2DIAGNOSTIC, 21, -4.670038526550e-01, 7.669494089813e-06, 4.0609e+00, 2.2835e-01, + 2DIAGNOSTIC, 22, -4.670038526550e-01, 4.891021495972e-06, 4.1640e+00, 1.0311e-01, + 2DIAGNOSTIC, 23, -4.670038526550e-01, 3.197947573530e-06, 4.2771e+00, 1.1307e-01, + 2DIAGNOSTIC, 24, -4.670038526550e-01, 1.695111572692e-06, 4.3922e+00, 1.1513e-01, + 2DIAGNOSTIC, 25, -4.670038526550e-01, 1.184095748480e-06, 4.5064e+00, 1.1423e-01, + 2DIAGNOSTIC, 26, -4.670038526550e-01, 1.114408910478e-06, 4.6333e+00, 1.2685e-01, + 2DIAGNOSTIC, 27, -4.670038526550e-01, 1.131312119408e-06, 4.7455e+00, 1.1217e-01, + 2DIAGNOSTIC, 28, -4.670038526550e-01, 1.136817736926e-06, 4.8592e+00, 1.1373e-01, + 2DIAGNOSTIC, 29, -4.670038526550e-01, 1.097436480309e-06, 4.9763e+00, 1.1712e-01, + 2DIAGNOSTIC, 30, -4.670038526550e-01, 1.060837773660e-06, 5.1027e+00, 1.2635e-01, + 2DIAGNOSTIC, 31, -4.670038526550e-01, 1.026601365431e-06, 5.2065e+00, 1.0388e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.029192694637e-01, 1.797693134862e+308, 6.4610e+00, 1.2544e+00, + 2DIAGNOSTIC, 2, -4.032746917778e-01, 1.797693134862e+308, 7.0778e+00, 6.1685e-01, + 2DIAGNOSTIC, 3, -4.034461185351e-01, 1.797693134862e+308, 7.6699e+00, 5.9210e-01, + 2DIAGNOSTIC, 4, -4.035571030349e-01, 1.797693134862e+308, 8.5965e+00, 9.2654e-01, + 2DIAGNOSTIC, 5, -4.035612096193e-01, 1.797693134862e+308, 9.2666e+00, 6.7013e-01, + 2DIAGNOSTIC, 6, -4.035602217701e-01, 1.797693134862e+308, 1.0010e+01, 7.4314e-01, + 2DIAGNOSTIC, 7, -4.035601350812e-01, 1.797693134862e+308, 1.0768e+01, 7.5785e-01, + 2DIAGNOSTIC, 8, -4.035597336600e-01, 1.797693134862e+308, 1.1445e+01, 6.7694e-01, + 2DIAGNOSTIC, 9, -4.035595877634e-01, 1.797693134862e+308, 1.2124e+01, 6.7993e-01, + 2DIAGNOSTIC, 10, -4.035594878274e-01, 7.152101004268e-05, 1.2807e+01, 6.8207e-01, + 2DIAGNOSTIC, 11, -4.035592361893e-01, 2.752266736589e-05, 1.3402e+01, 5.9544e-01, + 2DIAGNOSTIC, 12, -4.035592827245e-01, 9.311363522266e-06, 1.4075e+01, 6.7301e-01, + 2DIAGNOSTIC, 13, -4.035599039994e-01, 2.452788826726e-06, 1.4693e+01, 6.1789e-01, + 2DIAGNOSTIC, 14, -4.035603926871e-01, 2.174854206755e-06, 1.5279e+01, 5.8628e-01, + 2DIAGNOSTIC, 15, -4.035601077373e-01, 2.123217074698e-06, 1.5885e+01, 6.0539e-01, + 2DIAGNOSTIC, 16, -4.035598636642e-01, 2.024652966226e-06, 1.6469e+01, 5.8442e-01, + 2DIAGNOSTIC, 17, -4.035605518084e-01, 1.959994885142e-06, 1.7021e+01, 5.5174e-01, + 2DIAGNOSTIC, 18, -4.035605089573e-01, 1.875358497272e-06, 1.7670e+01, 6.4889e-01, + 2DIAGNOSTIC, 19, -4.035604777181e-01, 1.782943273743e-06, 1.8343e+01, 6.7369e-01, + 2DIAGNOSTIC, 20, -4.035601497803e-01, 1.675795770262e-06, 1.9019e+01, 6.7578e-01, + 2DIAGNOSTIC, 21, -4.035612574034e-01, 1.600474549085e-06, 1.9688e+01, 6.6945e-01, + 2DIAGNOSTIC, 22, -4.035611939814e-01, 1.521451020219e-06, 2.0298e+01, 6.0942e-01, + 2DIAGNOSTIC, 23, -4.035610547898e-01, 1.456601578881e-06, 2.0982e+01, 6.8379e-01, + 2DIAGNOSTIC, 24, -4.035614489667e-01, 1.417348706650e-06, 2.1671e+01, 6.8899e-01, + 2DIAGNOSTIC, 25, -4.035611991400e-01, 1.357610042774e-06, 2.2421e+01, 7.5047e-01, + 2DIAGNOSTIC, 26, -4.035608121054e-01, 1.276601457149e-06, 2.3101e+01, 6.7955e-01, + 2DIAGNOSTIC, 27, -4.035610345204e-01, 1.220546244171e-06, 2.3850e+01, 7.4898e-01, + 2DIAGNOSTIC, 28, -4.035605190731e-01, 1.150489356699e-06, 2.4522e+01, 6.7262e-01, + 2DIAGNOSTIC, 29, -4.035611608338e-01, 1.099411130120e-06, 2.5146e+01, 6.2380e-01, + 2DIAGNOSTIC, 30, -4.035611041933e-01, 1.041270794623e-06, 2.5942e+01, 7.9544e-01, + 2DIAGNOSTIC, 31, -4.035606602318e-01, 1.004094952246e-06, 2.6701e+01, 7.5958e-01, + Elapsed time (stage 1): 2.7114e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.980223681840e-01, 1.797693134862e+308, 2.4934e-01, 2.4934e-01, + 1DIAGNOSTIC, 2, -9.057461300094e-01, 1.797693134862e+308, 3.4332e-01, 9.3976e-02, + 1DIAGNOSTIC, 3, -9.121264458104e-01, 1.797693134862e+308, 4.3764e-01, 9.4320e-02, + 1DIAGNOSTIC, 4, -9.175055338686e-01, 1.797693134862e+308, 5.2950e-01, 9.1861e-02, + 1DIAGNOSTIC, 5, -9.215893800190e-01, 1.797693134862e+308, 6.2775e-01, 9.8250e-02, + 1DIAGNOSTIC, 6, -9.250203459582e-01, 1.797693134862e+308, 7.2003e-01, 9.2283e-02, + 1DIAGNOSTIC, 7, -9.279387428045e-01, 1.797693134862e+308, 8.1389e-01, 9.3859e-02, + 1DIAGNOSTIC, 8, -9.304875792819e-01, 1.797693134862e+308, 9.0632e-01, 9.2432e-02, + 1DIAGNOSTIC, 9, -9.327544951388e-01, 1.797693134862e+308, 1.0019e+00, 9.5587e-02, + 1DIAGNOSTIC, 10, -9.347483675048e-01, 2.431297265576e-03, 1.0992e+00, 9.7270e-02, + 1DIAGNOSTIC, 11, -9.364693115545e-01, 1.847544613995e-03, 1.1917e+00, 9.2519e-02, + 1DIAGNOSTIC, 12, -9.379534984686e-01, 1.430459738640e-03, 1.2870e+00, 9.5265e-02, + 1DIAGNOSTIC, 13, -9.392620368567e-01, 1.129037285121e-03, 1.3856e+00, 9.8676e-02, + 1DIAGNOSTIC, 14, -9.403146142830e-01, 9.084399808171e-04, 1.4769e+00, 9.1283e-02, + 1DIAGNOSTIC, 15, -9.413857076342e-01, 7.391570961153e-04, 1.5670e+00, 9.0068e-02, + 1DIAGNOSTIC, 16, -9.422218886183e-01, 6.044546143184e-04, 1.6620e+00, 9.4980e-02, + 1DIAGNOSTIC, 17, -9.429366259351e-01, 4.950271000067e-04, 1.7557e+00, 9.3757e-02, + 1DIAGNOSTIC, 18, -9.436064869179e-01, 4.064470942260e-04, 1.8452e+00, 8.9438e-02, + 1DIAGNOSTIC, 19, -9.442304623528e-01, 3.357572103193e-04, 1.9397e+00, 9.4514e-02, + 1DIAGNOSTIC, 20, -9.448228064261e-01, 2.801773801957e-04, 2.0327e+00, 9.3057e-02, + 1DIAGNOSTIC, 21, -9.453755052490e-01, 2.366361598386e-04, 2.1319e+00, 9.9176e-02, + 1DIAGNOSTIC, 22, -9.458924060764e-01, 2.025697462182e-04, 2.2389e+00, 1.0696e-01, + 1DIAGNOSTIC, 23, -9.463563691135e-01, 1.759333789175e-04, 2.3379e+00, 9.9002e-02, + 1DIAGNOSTIC, 24, -9.468075021488e-01, 1.539870014121e-04, 2.4434e+00, 1.0549e-01, + 1DIAGNOSTIC, 25, -9.472418382095e-01, 1.375996034962e-04, 2.5384e+00, 9.4993e-02, + 1DIAGNOSTIC, 26, -9.476601150646e-01, 1.241699678582e-04, 2.6394e+00, 1.0105e-01, + 1DIAGNOSTIC, 27, -9.480595468099e-01, 1.125593437406e-04, 2.7395e+00, 1.0013e-01, + 1DIAGNOSTIC, 28, -9.484401099325e-01, 1.025498374810e-04, 2.8346e+00, 9.5049e-02, + 1DIAGNOSTIC, 29, -9.487992610202e-01, 9.383359986732e-05, 2.9298e+00, 9.5193e-02, + 1DIAGNOSTIC, 30, -9.491320050202e-01, 8.618105116601e-05, 3.0307e+00, 1.0094e-01, + 1DIAGNOSTIC, 31, -9.494378289694e-01, 7.926855821183e-05, 3.1255e+00, 9.4792e-02, + 1DIAGNOSTIC, 32, -9.497267127279e-01, 7.292981248088e-05, 3.2241e+00, 9.8575e-02, + 1DIAGNOSTIC, 33, -9.499962254615e-01, 6.681201429608e-05, 3.3227e+00, 9.8622e-02, + 1DIAGNOSTIC, 34, -9.502519255428e-01, 6.103006944239e-05, 3.4196e+00, 9.6913e-02, + 1DIAGNOSTIC, 35, -9.504946090612e-01, 5.566092031670e-05, 3.5188e+00, 9.9151e-02, + 1DIAGNOSTIC, 36, -9.507199463818e-01, 5.073542535156e-05, 3.6167e+00, 9.7885e-02, + 1DIAGNOSTIC, 37, -9.509212574190e-01, 4.618974495961e-05, 3.7150e+00, 9.8354e-02, + 1DIAGNOSTIC, 38, -9.511020205651e-01, 4.198489837919e-05, 3.8130e+00, 9.7982e-02, + 1DIAGNOSTIC, 39, -9.512640268010e-01, 3.807037689344e-05, 3.9133e+00, 1.0027e-01, + 1DIAGNOSTIC, 40, -9.513898505575e-01, 3.422411120427e-05, 4.0148e+00, 1.0154e-01, + 1DIAGNOSTIC, 41, -9.515243448752e-01, 3.058845433808e-05, 4.1151e+00, 1.0025e-01, + 1DIAGNOSTIC, 42, -9.516405733523e-01, 2.715945781123e-05, 4.2174e+00, 1.0232e-01, + 1DIAGNOSTIC, 43, -9.517461291959e-01, 2.397215888835e-05, 4.3211e+00, 1.0375e-01, + 1DIAGNOSTIC, 44, -9.518258871865e-01, 2.098521436151e-05, 4.4238e+00, 1.0267e-01, + 1DIAGNOSTIC, 45, -9.519203624023e-01, 1.843503615264e-05, 4.5239e+00, 1.0012e-01, + 1DIAGNOSTIC, 46, -9.519366783988e-01, 1.586032992999e-05, 4.6335e+00, 1.0956e-01, + 1DIAGNOSTIC, 47, -9.520111223543e-01, 1.370263280525e-05, 4.7299e+00, 9.6423e-02, + 1DIAGNOSTIC, 48, -9.518456033076e-01, 1.046094354096e-05, 4.8300e+00, 1.0012e-01, + 1DIAGNOSTIC, 49, -9.516229106075e-01, 6.064242779255e-06, 4.9328e+00, 1.0283e-01, + 1DIAGNOSTIC, 50, -9.512666198792e-01, -4.582349117169e-08, 5.0423e+00, 1.0948e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.998137617464e-01, 1.797693134862e+308, 5.9020e+00, 8.5965e-01, + 1DIAGNOSTIC, 2, -9.048971393624e-01, 1.797693134862e+308, 6.5681e+00, 6.6611e-01, + 1DIAGNOSTIC, 3, -9.084228611737e-01, 1.797693134862e+308, 7.2091e+00, 6.4097e-01, + 1DIAGNOSTIC, 4, -9.113168215974e-01, 1.797693134862e+308, 7.8608e+00, 6.5175e-01, + 1DIAGNOSTIC, 5, -9.136165401585e-01, 1.797693134862e+308, 8.5152e+00, 6.5441e-01, + 1DIAGNOSTIC, 6, -9.156299140733e-01, 1.797693134862e+308, 9.1557e+00, 6.4045e-01, + 1DIAGNOSTIC, 7, -9.172643417498e-01, 1.797693134862e+308, 9.8199e+00, 6.6419e-01, + 1DIAGNOSTIC, 8, -9.185653339680e-01, 1.797693134862e+308, 1.0492e+01, 6.7172e-01, + 1DIAGNOSTIC, 9, -9.197047415669e-01, 1.797693134862e+308, 1.1131e+01, 6.3963e-01, + 1DIAGNOSTIC, 10, -9.207193216752e-01, 1.375116883001e-03, 1.1802e+01, 6.7107e-01, + 1DIAGNOSTIC, 11, -9.216301347064e-01, 1.019244048179e-03, 1.2464e+01, 6.6150e-01, + 1DIAGNOSTIC, 12, -9.224430964666e-01, 7.830878718779e-04, 1.3126e+01, 6.6251e-01, + 1DIAGNOSTIC, 13, -9.231961511809e-01, 6.141109131949e-04, 1.3794e+01, 6.6784e-01, + 1DIAGNOSTIC, 14, -9.238872831641e-01, 4.925158109516e-04, 1.4463e+01, 6.6902e-01, + 1DIAGNOSTIC, 15, -9.245395814120e-01, 4.027507137498e-04, 1.5142e+01, 6.7888e-01, + 1DIAGNOSTIC, 16, -9.251571768638e-01, 3.379020085032e-04, 1.5794e+01, 6.5192e-01, + 1DIAGNOSTIC, 17, -9.257389565172e-01, 2.897501617873e-04, 1.6459e+01, 6.6501e-01, + 1DIAGNOSTIC, 18, -9.262929755837e-01, 2.519274832119e-04, 1.7134e+01, 6.7486e-01, + 1DIAGNOSTIC, 19, -9.268241650032e-01, 2.218197410704e-04, 1.7793e+01, 6.5929e-01, + 1DIAGNOSTIC, 20, -9.273311525365e-01, 1.975357055133e-04, 1.8437e+01, 6.4369e-01, + 1DIAGNOSTIC, 21, -9.278172946519e-01, 1.776507275752e-04, 1.9078e+01, 6.4153e-01, + 1DIAGNOSTIC, 22, -9.282875047383e-01, 1.609483541255e-04, 1.9758e+01, 6.7945e-01, + 1DIAGNOSTIC, 23, -9.287451771824e-01, 1.468545320714e-04, 2.0426e+01, 6.6872e-01, + 1DIAGNOSTIC, 24, -9.291754507995e-01, 1.345576280887e-04, 2.1072e+01, 6.4539e-01, + 1DIAGNOSTIC, 25, -9.295894480797e-01, 1.237480144887e-04, 2.1723e+01, 6.5154e-01, + 1DIAGNOSTIC, 26, -9.300028200394e-01, 1.143482998489e-04, 2.2393e+01, 6.7004e-01, + 1DIAGNOSTIC, 27, -9.303998553920e-01, 1.060366829875e-04, 2.3039e+01, 6.4527e-01, + 1DIAGNOSTIC, 28, -9.307792504028e-01, 9.858313851903e-05, 2.3676e+01, 6.3689e-01, + 1DIAGNOSTIC, 29, -9.311411471430e-01, 9.182377788069e-05, 2.4349e+01, 6.7348e-01, + 1DIAGNOSTIC, 30, -9.314685970858e-01, 8.540730685565e-05, 2.4979e+01, 6.2955e-01, + 1DIAGNOSTIC, 31, -9.317708420659e-01, 7.916252763050e-05, 2.5615e+01, 6.3623e-01, + 1DIAGNOSTIC, 32, -9.320500307881e-01, 7.302761982955e-05, 2.6289e+01, 6.7454e-01, + 1DIAGNOSTIC, 33, -9.323092286289e-01, 6.704166493660e-05, 2.6945e+01, 6.5525e-01, + 1DIAGNOSTIC, 34, -9.325461268585e-01, 6.110302641988e-05, 2.7612e+01, 6.6736e-01, + 1DIAGNOSTIC, 35, -9.327558017938e-01, 5.520310498873e-05, 2.8286e+01, 6.7403e-01, + 1DIAGNOSTIC, 36, -9.329581567925e-01, 4.967106316150e-05, 2.8954e+01, 6.6795e-01, + 1DIAGNOSTIC, 37, -9.331481146348e-01, 4.461564632789e-05, 2.9619e+01, 6.6547e-01, + 1DIAGNOSTIC, 38, -9.333188959780e-01, 4.005356533870e-05, 3.0296e+01, 6.7603e-01, + 1DIAGNOSTIC, 39, -9.334853487981e-01, 3.610538307804e-05, 3.0974e+01, 6.7829e-01, + 1DIAGNOSTIC, 40, -9.336460615705e-01, 3.269657215538e-05, 3.1636e+01, 6.6229e-01, + 1DIAGNOSTIC, 41, -9.337891790977e-01, 2.970600630747e-05, 3.2310e+01, 6.7398e-01, + 1DIAGNOSTIC, 42, -9.339246608725e-01, 2.709173990441e-05, 3.2963e+01, 6.5251e-01, + 1DIAGNOSTIC, 43, -9.340486447909e-01, 2.478754253904e-05, 3.3620e+01, 6.5751e-01, + 1DIAGNOSTIC, 44, -9.341599774620e-01, 2.269198818678e-05, 3.4256e+01, 6.3578e-01, + 1DIAGNOSTIC, 45, -9.342718247138e-01, 2.075512248737e-05, 3.4892e+01, 6.3632e-01, + 1DIAGNOSTIC, 46, -9.343694452339e-01, 1.895975123143e-05, 3.5536e+01, 6.4368e-01, + 1DIAGNOSTIC, 47, -9.344717635025e-01, 1.738034824295e-05, 3.6215e+01, 6.7943e-01, + 1DIAGNOSTIC, 48, -9.345641790313e-01, 1.592812534689e-05, 3.6873e+01, 6.5740e-01, + 1DIAGNOSTIC, 49, -9.346455855891e-01, 1.460459001016e-05, 3.7533e+01, 6.6075e-01, + 1DIAGNOSTIC, 50, -9.347307824310e-01, 1.348905714093e-05, 3.8209e+01, 6.7551e-01, + 1DIAGNOSTIC, 51, -9.348120980778e-01, 1.251696890947e-05, 3.8867e+01, 6.5771e-01, + 1DIAGNOSTIC, 52, -9.348885639865e-01, 1.167508481720e-05, 3.9537e+01, 6.7077e-01, + 1DIAGNOSTIC, 53, -9.349615173912e-01, 1.092946664032e-05, 4.0206e+01, 6.6874e-01, + 1DIAGNOSTIC, 54, -9.350296865911e-01, 1.022648887967e-05, 4.0866e+01, 6.5967e-01, + 1DIAGNOSTIC, 55, -9.350910365505e-01, 9.578337023055e-06, 4.1512e+01, 6.4591e-01, + 1DIAGNOSTIC, 56, -9.351477028349e-01, 8.921314023174e-06, 4.2158e+01, 6.4667e-01, + 1DIAGNOSTIC, 57, -9.352040292174e-01, 8.327472192371e-06, 4.2818e+01, 6.6009e-01, + 1DIAGNOSTIC, 58, -9.352473975327e-01, 7.715979616300e-06, 4.3456e+01, 6.3778e-01, + 1DIAGNOSTIC, 59, -9.352861525636e-01, 7.052455902802e-06, 4.4100e+01, 6.4374e-01, + 1DIAGNOSTIC, 60, -9.353225066808e-01, 6.398350035790e-06, 4.4741e+01, 6.4146e-01, + 1DIAGNOSTIC, 61, -9.353545857003e-01, 5.763429971755e-06, 4.5417e+01, 6.7514e-01, + 1DIAGNOSTIC, 62, -9.353908966992e-01, 5.194748483484e-06, 4.6083e+01, 6.6674e-01, + 1DIAGNOSTIC, 63, -9.354126345033e-01, 4.647016162845e-06, 4.6738e+01, 6.5459e-01, + 1DIAGNOSTIC, 64, -9.354394959086e-01, 4.168794361100e-06, 4.7415e+01, 6.7704e-01, + 1DIAGNOSTIC, 65, -9.354566092232e-01, 3.716649909540e-06, 4.8092e+01, 6.7680e-01, + 1DIAGNOSTIC, 66, -9.354688132027e-01, 3.282002806412e-06, 4.8766e+01, 6.7431e-01, + 1DIAGNOSTIC, 67, -9.354796829115e-01, 2.894582420882e-06, 4.9432e+01, 6.6576e-01, + 1DIAGNOSTIC, 68, -9.354884013499e-01, 2.517194410231e-06, 5.0096e+01, 6.6431e-01, + 1DIAGNOSTIC, 69, -9.354926719716e-01, 2.141732108362e-06, 5.0744e+01, 6.4771e-01, + 1DIAGNOSTIC, 70, -9.354900964458e-01, 1.761152844735e-06, 5.1393e+01, 6.4876e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.850159950524e-01, 1.797693134862e+308, 5.7020e+01, 5.6274e+00, + 1DIAGNOSTIC, 2, -8.883099328317e-01, 1.797693134862e+308, 6.2344e+01, 5.3236e+00, + 1DIAGNOSTIC, 3, -8.911263829827e-01, 1.797693134862e+308, 6.7688e+01, 5.3448e+00, + 1DIAGNOSTIC, 4, -8.936734255909e-01, 1.797693134862e+308, 7.3026e+01, 5.3375e+00, + 1DIAGNOSTIC, 5, -8.959921546739e-01, 1.797693134862e+308, 7.8394e+01, 5.3678e+00, + 1DIAGNOSTIC, 6, -8.981611728776e-01, 1.797693134862e+308, 8.3766e+01, 5.3724e+00, + 1DIAGNOSTIC, 7, -9.002648278795e-01, 1.797693134862e+308, 8.9117e+01, 5.3507e+00, + 1DIAGNOSTIC, 8, -9.022205051473e-01, 1.797693134862e+308, 9.4435e+01, 5.3187e+00, + 1DIAGNOSTIC, 9, -9.038628677598e-01, 1.797693134862e+308, 9.9813e+01, 5.3772e+00, + 1DIAGNOSTIC, 10, -9.052524027914e-01, 1.431492665278e-03, 1.0517e+02, 5.3598e+00, + 1DIAGNOSTIC, 11, -9.064497144361e-01, 1.180291123747e-03, 1.1056e+02, 5.3840e+00, + 1DIAGNOSTIC, 12, -9.073522689877e-01, 9.750345845956e-04, 1.1592e+02, 5.3624e+00, + 1DIAGNOSTIC, 13, -9.081468684371e-01, 8.005959432268e-04, 1.2131e+02, 5.3943e+00, + 1DIAGNOSTIC, 14, -9.088541000008e-01, 6.514053634632e-04, 1.2665e+02, 5.3392e+00, + 1DIAGNOSTIC, 15, -9.094862411644e-01, 5.244230075061e-04, 1.3204e+02, 5.3831e+00, + 1DIAGNOSTIC, 16, -9.100535855866e-01, 4.188431260966e-04, 1.3742e+02, 5.3825e+00, + 1DIAGNOSTIC, 17, -9.105642892454e-01, 3.353072380496e-04, 1.4280e+02, 5.3839e+00, + 1DIAGNOSTIC, 18, -9.110317325222e-01, 2.722817550809e-04, 1.4815e+02, 5.3450e+00, + 1DIAGNOSTIC, 19, -9.114563916947e-01, 2.247253821117e-04, 1.5353e+02, 5.3808e+00, + 1DIAGNOSTIC, 20, -9.118441704304e-01, 1.888416457142e-04, 1.5888e+02, 5.3540e+00, + 1DIAGNOSTIC, 21, -9.122052541616e-01, 1.620621111788e-04, 1.6423e+02, 5.3482e+00, + 1DIAGNOSTIC, 22, -9.125390617063e-01, 1.402100803381e-04, 1.6957e+02, 5.3372e+00, + 1DIAGNOSTIC, 23, -9.128533969828e-01, 1.222653318416e-04, 1.7498e+02, 5.4168e+00, + 1DIAGNOSTIC, 24, -9.131459791548e-01, 1.074287253878e-04, 1.8036e+02, 5.3805e+00, + 1DIAGNOSTIC, 25, -9.134153814125e-01, 9.501629966358e-05, 1.8574e+02, 5.3738e+00, + 1DIAGNOSTIC, 26, -9.136718456027e-01, 8.458113470630e-05, 1.9109e+02, 5.3514e+00, + 1DIAGNOSTIC, 27, -9.139151070805e-01, 7.573114556266e-05, 1.9648e+02, 5.3955e+00, + 1DIAGNOSTIC, 28, -9.141458335443e-01, 6.821439569685e-05, 2.0184e+02, 5.3538e+00, + 1DIAGNOSTIC, 29, -9.143626406875e-01, 6.173948992403e-05, 2.0720e+02, 5.3575e+00, + 1DIAGNOSTIC, 30, -9.145647612410e-01, 5.605733570181e-05, 2.1256e+02, 5.3672e+00, + 1DIAGNOSTIC, 31, -9.147602552425e-01, 5.110104234302e-05, 2.1798e+02, 5.4127e+00, + 1DIAGNOSTIC, 32, -9.149429223232e-01, 4.670633794072e-05, 2.2331e+02, 5.3309e+00, + 1DIAGNOSTIC, 33, -9.151184995659e-01, 4.283836135843e-05, 2.2867e+02, 5.3638e+00, + 1DIAGNOSTIC, 34, -9.152862298043e-01, 3.941456280738e-05, 2.3403e+02, 5.3616e+00, + 1DIAGNOSTIC, 35, -9.154464898093e-01, 3.632931232364e-05, 2.3945e+02, 5.4202e+00, + 1DIAGNOSTIC, 36, -9.156002164577e-01, 3.357217935857e-05, 2.4483e+02, 5.3746e+00, + 1DIAGNOSTIC, 37, -9.157492312066e-01, 3.113197659681e-05, 2.5022e+02, 5.3929e+00, + 1DIAGNOSTIC, 38, -9.158924276885e-01, 2.897966637700e-05, 2.5559e+02, 5.3665e+00, + 1DIAGNOSTIC, 39, -9.160271501413e-01, 2.704231034224e-05, 2.6098e+02, 5.3918e+00, + 1DIAGNOSTIC, 40, -9.161576915529e-01, 2.527098800014e-05, 2.6637e+02, 5.3899e+00, + 1DIAGNOSTIC, 41, -9.162877568914e-01, 2.370506393744e-05, 2.7175e+02, 5.3834e+00, + 1DIAGNOSTIC, 42, -9.164117862579e-01, 2.227908670763e-05, 2.7713e+02, 5.3814e+00, + 1DIAGNOSTIC, 43, -9.165298157103e-01, 2.097195638109e-05, 2.8253e+02, 5.3932e+00, + 1DIAGNOSTIC, 44, -9.166467784820e-01, 1.978957716629e-05, 2.8788e+02, 5.3579e+00, + 1DIAGNOSTIC, 45, -9.167565357258e-01, 1.868881299596e-05, 2.9329e+02, 5.4013e+00, + 1DIAGNOSTIC, 46, -9.168627046338e-01, 1.765895301902e-05, 2.9866e+02, 5.3758e+00, + 1DIAGNOSTIC, 47, -9.169626119481e-01, 1.668271785080e-05, 3.0406e+02, 5.4031e+00, + 1DIAGNOSTIC, 48, -9.170602501164e-01, 1.576350868658e-05, 3.0941e+02, 5.3449e+00, + 1DIAGNOSTIC, 49, -9.171557132723e-01, 1.488456321856e-05, 3.1480e+02, 5.3940e+00, + 1DIAGNOSTIC, 50, -9.172473392347e-01, 1.404603646379e-05, 3.2015e+02, 5.3503e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -8.839796962106e-01, 1.797693134862e+308, 3.6410e+02, 4.3946e+01, + 1DIAGNOSTIC, 2, -8.860803177951e-01, 1.797693134862e+308, 4.0741e+02, 4.3314e+01, + 1DIAGNOSTIC, 3, -8.882078049711e-01, 1.797693134862e+308, 4.5090e+02, 4.3483e+01, + 1DIAGNOSTIC, 4, -8.901104564935e-01, 1.797693134862e+308, 4.9408e+02, 4.3187e+01, + 1DIAGNOSTIC, 5, -8.917203665914e-01, 1.797693134862e+308, 5.3736e+02, 4.3273e+01, + 1DIAGNOSTIC, 6, -8.931217372980e-01, 1.797693134862e+308, 5.8069e+02, 4.3330e+01, + 1DIAGNOSTIC, 7, -8.943942767323e-01, 1.797693134862e+308, 6.2394e+02, 4.3251e+01, + 1DIAGNOSTIC, 8, -8.956013566430e-01, 1.797693134862e+308, 6.6722e+02, 4.3278e+01, + 1DIAGNOSTIC, 9, -8.966755831756e-01, 1.797693134862e+308, 7.1061e+02, 4.3393e+01, + 1DIAGNOSTIC, 10, -8.976035227892e-01, 9.689522791516e-04, 7.5398e+02, 4.3368e+01, + 1DIAGNOSTIC, 11, -8.982964157202e-01, 7.862780257659e-04, 7.9722e+02, 4.3242e+01, + 1DIAGNOSTIC, 12, -8.989078177999e-01, 6.350310173217e-04, 8.4055e+02, 4.3331e+01, + 1DIAGNOSTIC, 13, -8.994348715078e-01, 5.141999122937e-04, 8.8404e+02, 4.3493e+01, + 1DIAGNOSTIC, 14, -8.999089663449e-01, 4.175395656783e-04, 9.2756e+02, 4.3521e+01, + 1DIAGNOSTIC, 15, -9.002169263808e-01, 3.360593027103e-04, 9.7072e+02, 4.3160e+01, + 1DIAGNOSTIC, 16, -9.004473767903e-01, 2.662877278863e-04, 1.0144e+03, 4.3671e+01, + 1DIAGNOSTIC, 17, -9.007167688206e-01, 2.089416697860e-04, 1.0578e+03, 4.3368e+01, + 1DIAGNOSTIC, 18, -9.008228954972e-01, 1.616676208871e-04, 1.1012e+03, 4.3463e+01, + 1DIAGNOSTIC, 19, -9.009740869347e-01, 1.247937646952e-04, 1.1445e+03, 4.3226e+01, + 1DIAGNOSTIC, 20, -9.010014350070e-01, 9.517880346575e-05, 1.1879e+03, 4.3435e+01, + Elapsed time (stage 2): 1188 + + +Total elapsed time: 1238 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:16 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:16 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:19 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:23 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:26 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4897 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:26 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:30 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:30 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4941 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:30 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:33 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:33 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4987 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:33 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4996 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:34 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:54 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:56 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:56 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:57 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:58 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:01 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:01 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:02 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:03 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC009 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:14 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:25 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC009 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:25 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC009 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:26 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC009 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:26 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5885 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:28 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:28 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5970 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:30 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:30 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC009_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 68.683 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/logs/proc_func_19-03-2024-9543.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:38 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC009 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/QC/sub-PNC009_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC009* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 68.717 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC009_ses-03 +========================reprocessing without filter=================== +sub-PNC010_ses-01 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC010 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC010 Session: ses-01 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC010 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC010 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:42 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:42 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz is 37.500004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:46:44 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:48:47 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:49:01 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.36 (mm) at sub-brick 2 +++ Max delta displ in automask = 0.14 (mm) at sub-brick 125 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:01:19 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:01:36 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz is 37.500004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:03:40 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:05:47 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz is 37.500004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:07:57 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.831 -2.214 2.501 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.1 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.994 -4.142 4.385 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.3 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:12:34 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.9000000953674316 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:13:01 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x558013f0f6f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [112.102, 61.5536, -108.798] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558013d86730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558013f26320 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x558013f12fa0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [79.8093, 126.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558013f18e10) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558014723230 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5580147215c0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [112.102, 61.5536, -108.798] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558013f153f0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x55801524d450 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x55801471fda0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [79.8093, 126.5, -124.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558013f1c360) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558015a47780 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.582870016122e-01, 1.797693134862e+308, 4.3433e-02, 4.3432e-02, + 2DIAGNOSTIC, 2, -7.601562486148e-01, 1.797693134862e+308, 4.4634e-02, 1.2012e-03, + 2DIAGNOSTIC, 3, -7.618116365177e-01, 1.797693134862e+308, 4.5854e-02, 1.2200e-03, + 2DIAGNOSTIC, 4, -7.632380158158e-01, 1.797693134862e+308, 4.7130e-02, 1.2760e-03, + 2DIAGNOSTIC, 5, -7.650535728516e-01, 1.797693134862e+308, 4.8396e-02, 1.2660e-03, + 2DIAGNOSTIC, 6, -7.696607622045e-01, 1.797693134862e+308, 4.9932e-02, 1.5361e-03, + 2DIAGNOSTIC, 7, -7.849772577833e-01, 1.797693134862e+308, 5.1922e-02, 1.9898e-03, + 2DIAGNOSTIC, 8, -7.866184143238e-01, 1.797693134862e+308, 5.3419e-02, 1.4970e-03, + 2DIAGNOSTIC, 9, -7.878600656244e-01, 1.797693134862e+308, 5.4687e-02, 1.2681e-03, + 2DIAGNOSTIC, 10, -7.958171339659e-01, 3.312891924360e-03, 5.6433e-02, 1.7459e-03, + 2DIAGNOSTIC, 11, -7.975718548804e-01, 3.234707568492e-03, 5.7912e-02, 1.4791e-03, + 2DIAGNOSTIC, 12, -7.982827251233e-01, 2.952587862637e-03, 5.9327e-02, 1.4150e-03, + 2DIAGNOSTIC, 13, -7.993816226136e-01, 2.528874272800e-03, 6.0749e-02, 1.4219e-03, + 2DIAGNOSTIC, 14, -8.022884323744e-01, 2.055505252868e-03, 6.2648e-02, 1.8990e-03, + 2DIAGNOSTIC, 15, -8.043417618498e-01, 1.550198233093e-03, 6.4769e-02, 2.1210e-03, + 2DIAGNOSTIC, 16, -8.045356080894e-01, 1.066216364130e-03, 6.6211e-02, 1.4420e-03, + 2DIAGNOSTIC, 17, -8.069227821012e-01, 9.226771762164e-04, 6.7672e-02, 1.4610e-03, + 2DIAGNOSTIC, 18, -8.082961557707e-01, 7.715203644467e-04, 6.9596e-02, 1.9240e-03, + 2DIAGNOSTIC, 19, -8.088342455040e-01, 5.942450330692e-04, 7.1306e-02, 1.7099e-03, + 2DIAGNOSTIC, 20, -8.157029669471e-01, 6.464834096287e-04, 7.2765e-02, 1.4591e-03, + 2DIAGNOSTIC, 21, -8.221273281403e-01, 7.708599534085e-04, 7.4451e-02, 1.6859e-03, + 2DIAGNOSTIC, 22, -8.265405496458e-01, 8.935001456052e-04, 7.6152e-02, 1.7011e-03, + 2DIAGNOSTIC, 23, -8.318639762738e-01, 1.021009431901e-03, 7.8286e-02, 2.1338e-03, + 2DIAGNOSTIC, 24, -8.337593835020e-01, 1.112623114091e-03, 7.9961e-02, 1.6749e-03, + 2DIAGNOSTIC, 25, -8.383376207204e-01, 1.186518657835e-03, 8.1826e-02, 1.8649e-03, + 2DIAGNOSTIC, 26, -8.436294264325e-01, 1.215002563138e-03, 8.3725e-02, 1.8990e-03, + 2DIAGNOSTIC, 27, -8.457596794606e-01, 1.185066377023e-03, 8.6152e-02, 2.4271e-03, + 2DIAGNOSTIC, 28, -8.456191132890e-01, 1.063269958457e-03, 8.8243e-02, 2.0909e-03, + 2DIAGNOSTIC, 29, -8.461401669065e-01, 8.630725491161e-04, 8.9972e-02, 1.7290e-03, + 2DIAGNOSTIC, 30, -8.477616979865e-01, 6.938396640786e-04, 9.1642e-02, 1.6699e-03, + 2DIAGNOSTIC, 31, -8.495016379046e-01, 5.612198792388e-04, 9.3316e-02, 1.6742e-03, + 2DIAGNOSTIC, 32, -8.497685313131e-01, 4.343011150944e-04, 9.5008e-02, 1.6918e-03, + 2DIAGNOSTIC, 33, -8.500011447365e-01, 3.348127549396e-04, 9.6481e-02, 1.4732e-03, + 2DIAGNOSTIC, 34, -8.512590420499e-01, 2.420944466171e-04, 9.8419e-02, 1.9379e-03, + 2DIAGNOSTIC, 35, -8.518352481746e-01, 1.816779663524e-04, 9.9873e-02, 1.4541e-03, + 2DIAGNOSTIC, 36, -8.519582323683e-01, 1.593431669234e-04, 1.0133e-01, 1.4548e-03, + 2DIAGNOSTIC, 37, -8.544309089411e-01, 1.670967676425e-04, 1.0328e-01, 1.9481e-03, + 2DIAGNOSTIC, 38, -8.545061200581e-01, 1.576793916106e-04, 1.0483e-01, 1.5500e-03, + 2DIAGNOSTIC, 39, -8.546468495269e-01, 1.396092700899e-04, 1.0652e-01, 1.6942e-03, + 2DIAGNOSTIC, 40, -8.549835977223e-01, 1.261147216912e-04, 1.0845e-01, 1.9310e-03, + 2DIAGNOSTIC, 41, -8.560682023742e-01, 1.252578122124e-04, 1.1393e-01, 5.4801e-03, + 2DIAGNOSTIC, 42, -8.560681956862e-01, 1.143723243414e-04, 1.1540e-01, 1.4691e-03, + 2DIAGNOSTIC, 43, -8.560682163613e-01, 9.489232537824e-05, 1.1682e-01, 1.4212e-03, + 2DIAGNOSTIC, 44, -8.560682513160e-01, 7.755643834353e-05, 1.1825e-01, 1.4260e-03, + 2DIAGNOSTIC, 45, -8.560683104027e-01, 5.824823306128e-05, 1.1970e-01, 1.4489e-03, + 2DIAGNOSTIC, 46, -8.560684102571e-01, 3.458504941884e-05, 1.2112e-01, 1.4241e-03, + 2DIAGNOSTIC, 47, -8.560685789369e-01, 2.690863220121e-05, 1.2261e-01, 1.4849e-03, + 2DIAGNOSTIC, 48, -8.560688636801e-01, 1.772707555022e-05, 1.2404e-01, 1.4310e-03, + 2DIAGNOSTIC, 49, -8.560693437734e-01, 8.321169541081e-06, 1.2548e-01, 1.4470e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.512641071953e-01, 1.797693134862e+308, 1.7316e-01, 4.7677e-02, + 2DIAGNOSTIC, 2, -4.519533612737e-01, 1.797693134862e+308, 1.7607e-01, 2.9130e-03, + 2DIAGNOSTIC, 3, -4.541978103258e-01, 1.797693134862e+308, 1.7895e-01, 2.8799e-03, + 2DIAGNOSTIC, 4, -4.583672506140e-01, 1.797693134862e+308, 1.8151e-01, 2.5601e-03, + 2DIAGNOSTIC, 5, -4.680729685226e-01, 1.797693134862e+308, 1.8369e-01, 2.1808e-03, + 2DIAGNOSTIC, 6, -4.734697089434e-01, 1.797693134862e+308, 1.8579e-01, 2.0921e-03, + 2DIAGNOSTIC, 7, -4.836876889066e-01, 1.797693134862e+308, 1.8786e-01, 2.0702e-03, + 2DIAGNOSTIC, 8, -4.932658878974e-01, 1.797693134862e+308, 1.8997e-01, 2.1112e-03, + 2DIAGNOSTIC, 9, -5.036160065513e-01, 1.797693134862e+308, 1.9294e-01, 2.9750e-03, + 2DIAGNOSTIC, 10, -5.051336123128e-01, 8.340942542189e-03, 1.9572e-01, 2.7750e-03, + 2DIAGNOSTIC, 11, -5.077298966798e-01, 7.878184223338e-03, 1.9854e-01, 2.8269e-03, + 2DIAGNOSTIC, 12, -5.141514870250e-01, 7.139015153703e-03, 2.0175e-01, 3.2010e-03, + 2DIAGNOSTIC, 13, -5.186112147554e-01, 6.166365399231e-03, 2.0436e-01, 2.6121e-03, + 2DIAGNOSTIC, 14, -5.287270036257e-01, 5.362653350555e-03, 2.0650e-01, 2.1410e-03, + 2DIAGNOSTIC, 15, -5.315767242425e-01, 4.669322331279e-03, 2.0920e-01, 2.7039e-03, + 2DIAGNOSTIC, 16, -5.395442604820e-01, 4.123109769397e-03, 2.1241e-01, 3.2070e-03, + 2DIAGNOSTIC, 17, -5.407473302850e-01, 3.644715235640e-03, 2.1506e-01, 2.6469e-03, + 2DIAGNOSTIC, 18, -5.409743558561e-01, 3.191562921197e-03, 2.1743e-01, 2.3751e-03, + 2DIAGNOSTIC, 19, -5.412849023505e-01, 2.815349058335e-03, 2.1983e-01, 2.3959e-03, + 2DIAGNOSTIC, 20, -5.413739939141e-01, 2.263953508804e-03, 2.2222e-01, 2.3890e-03, + 2DIAGNOSTIC, 21, -5.414771012757e-01, 1.628449930894e-03, 2.2432e-01, 2.0990e-03, + 2DIAGNOSTIC, 22, -5.420368722290e-01, 1.081408609083e-03, 2.2639e-01, 2.0750e-03, + 2DIAGNOSTIC, 23, -5.434864443684e-01, 6.246236199684e-04, 2.2845e-01, 2.0552e-03, + 2DIAGNOSTIC, 24, -5.447105476522e-01, 4.138426264054e-04, 2.3134e-01, 2.8989e-03, + 2DIAGNOSTIC, 25, -5.450173455608e-01, 2.477709354214e-04, 2.3369e-01, 2.3420e-03, + 2DIAGNOSTIC, 26, -5.458391022464e-01, 2.598261887881e-04, 2.3602e-01, 2.3360e-03, + 2DIAGNOSTIC, 27, -5.482330144705e-01, 3.200247970140e-04, 2.3811e-01, 2.0909e-03, + 2DIAGNOSTIC, 28, -5.560252017440e-01, 5.017764445585e-04, 2.4018e-01, 2.0709e-03, + 2DIAGNOSTIC, 29, -5.593465274126e-01, 6.878797954444e-04, 2.4251e-01, 2.3210e-03, + 2DIAGNOSTIC, 30, -5.604859059466e-01, 8.192048277001e-04, 2.4454e-01, 2.0351e-03, + 2DIAGNOSTIC, 31, -5.684678148923e-01, 1.008740267861e-03, 2.4660e-01, 2.0618e-03, + 2DIAGNOSTIC, 32, -5.878111479160e-01, 1.423440848625e-03, 2.4900e-01, 2.3971e-03, + 2DIAGNOSTIC, 33, -6.064743940200e-01, 1.994172128041e-03, 2.5137e-01, 2.3720e-03, + 2DIAGNOSTIC, 34, -6.150502514918e-01, 2.488763621698e-03, 2.5838e-01, 7.0128e-03, + 2DIAGNOSTIC, 35, -6.150488035076e-01, 2.725550416869e-03, 2.6041e-01, 2.0301e-03, + 2DIAGNOSTIC, 36, -6.150527462802e-01, 2.705530562135e-03, 2.6247e-01, 2.0549e-03, + 2DIAGNOSTIC, 37, -6.150594057958e-01, 2.458483005192e-03, 2.6451e-01, 2.0421e-03, + 2DIAGNOSTIC, 38, -6.150706396685e-01, 2.096912175477e-03, 2.6654e-01, 2.0311e-03, + 2DIAGNOSTIC, 39, -6.150895578458e-01, 1.604980329850e-03, 2.6857e-01, 2.0311e-03, + 2DIAGNOSTIC, 40, -6.151213071487e-01, 1.007668960372e-03, 2.7060e-01, 2.0299e-03, + 2DIAGNOSTIC, 41, -6.151743202598e-01, 4.480274182282e-04, 2.7263e-01, 2.0239e-03, + 2DIAGNOSTIC, 42, -6.152617935624e-01, 1.124560888818e-04, 2.7467e-01, 2.0418e-03, + 2DIAGNOSTIC, 43, -6.154053762486e-01, 8.816685765523e-06, 2.7697e-01, 2.3050e-03, + 2DIAGNOSTIC, 44, -6.154941588041e-01, 1.202322572603e-05, 2.7900e-01, 2.0220e-03, + 2DIAGNOSTIC, 45, -6.155621198153e-01, 1.476612287109e-05, 2.8102e-01, 2.0220e-03, + 2DIAGNOSTIC, 46, -6.157872340806e-01, 1.861961297622e-05, 2.8334e-01, 2.3229e-03, + 2DIAGNOSTIC, 47, -6.159864773575e-01, 2.277866688778e-05, 2.8540e-01, 2.0590e-03, + 2DIAGNOSTIC, 48, -6.163998607482e-01, 2.914346035043e-05, 2.8746e-01, 2.0571e-03, + 2DIAGNOSTIC, 49, -6.168293975882e-01, 3.712645043814e-05, 2.8951e-01, 2.0568e-03, + 2DIAGNOSTIC, 50, -6.172785313944e-01, 4.614892732122e-05, 2.9155e-01, 2.0311e-03, + 2DIAGNOSTIC, 51, -6.178238862435e-01, 5.637113222675e-05, 2.9358e-01, 2.0370e-03, + 2DIAGNOSTIC, 52, -6.184893311728e-01, 6.809845666435e-05, 2.9563e-01, 2.0430e-03, + 2DIAGNOSTIC, 53, -6.190213795628e-01, 7.924055444190e-05, 2.9767e-01, 2.0490e-03, + 2DIAGNOSTIC, 54, -6.196225737421e-01, 8.883637071156e-05, 2.9973e-01, 2.0561e-03, + 2DIAGNOSTIC, 55, -6.212769398203e-01, 1.053735338809e-04, 3.0232e-01, 2.5852e-03, + 2DIAGNOSTIC, 56, -6.219390380990e-01, 1.188752109863e-04, 3.0491e-01, 2.5928e-03, + 2DIAGNOSTIC, 57, -6.219674057306e-01, 1.224923964127e-04, 3.0715e-01, 2.2430e-03, + 2DIAGNOSTIC, 58, -6.256889038635e-01, 1.503649794103e-04, 3.0939e-01, 2.2380e-03, + 2DIAGNOSTIC, 59, -6.293043362157e-01, 1.963334954805e-04, 3.1191e-01, 2.5229e-03, + 2DIAGNOSTIC, 60, -6.328339926071e-01, 2.543030402878e-04, 3.1501e-01, 3.0968e-03, + 2DIAGNOSTIC, 61, -6.340714188914e-01, 3.002729379157e-04, 3.1771e-01, 2.6999e-03, + 2DIAGNOSTIC, 62, -6.351892310480e-01, 3.307142567774e-04, 3.1983e-01, 2.1250e-03, + 2DIAGNOSTIC, 63, -6.359939436064e-01, 3.387549710265e-04, 3.2197e-01, 2.1389e-03, + 2DIAGNOSTIC, 64, -6.360634618225e-01, 3.183212348909e-04, 3.2439e-01, 2.4199e-03, + 2DIAGNOSTIC, 65, -6.364228014975e-01, 2.833568744419e-04, 3.2744e-01, 3.0470e-03, + 2DIAGNOSTIC, 66, -6.368227381800e-01, 2.308677990388e-04, 3.2958e-01, 2.1448e-03, + 2DIAGNOSTIC, 67, -6.369376509772e-01, 1.587383189062e-04, 3.3207e-01, 2.4819e-03, + 2DIAGNOSTIC, 68, -6.370713476134e-01, 1.013995110629e-04, 3.3456e-01, 2.4960e-03, + 2DIAGNOSTIC, 69, -6.371281916861e-01, 6.197241958995e-05, 3.3675e-01, 2.1889e-03, + 2DIAGNOSTIC, 70, -6.373088030071e-01, 4.390050903960e-05, 3.3926e-01, 2.5129e-03, + 2DIAGNOSTIC, 71, -6.373216903951e-01, 3.065851744381e-05, 3.4171e-01, 2.4481e-03, + 2DIAGNOSTIC, 72, -6.373280046514e-01, 2.247150255120e-05, 3.4387e-01, 2.1532e-03, + 2DIAGNOSTIC, 73, -6.372537076669e-01, 1.738486697431e-05, 3.4599e-01, 2.1250e-03, + 2DIAGNOSTIC, 74, -6.372742396004e-01, 1.139472580667e-05, 3.4900e-01, 3.0110e-03, + 2DIAGNOSTIC, 75, -6.372856067043e-01, 6.864876705632e-06, 3.5141e-01, 2.4099e-03, + 2DIAGNOSTIC, 76, -6.372874216861e-01, 4.414400545116e-06, 3.5381e-01, 2.4028e-03, + 2DIAGNOSTIC, 77, -6.372122683102e-01, 1.906557238151e-06, 3.5596e-01, 2.1489e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.792343005537e-01, 1.797693134862e+308, 4.2393e-01, 6.7971e-02, + 2DIAGNOSTIC, 2, -4.798996912069e-01, 1.797693134862e+308, 4.3409e-01, 1.0158e-02, + 2DIAGNOSTIC, 3, -4.811123565486e-01, 1.797693134862e+308, 4.4401e-01, 9.9130e-03, + 2DIAGNOSTIC, 4, -4.819456216524e-01, 1.797693134862e+308, 4.5390e-01, 9.8922e-03, + 2DIAGNOSTIC, 5, -4.826905768399e-01, 1.797693134862e+308, 4.6388e-01, 9.9828e-03, + 2DIAGNOSTIC, 6, -4.838310536085e-01, 1.797693134862e+308, 4.7513e-01, 1.1252e-02, + 2DIAGNOSTIC, 7, -4.838721347299e-01, 1.797693134862e+308, 4.8641e-01, 1.1276e-02, + 2DIAGNOSTIC, 8, -4.843635465768e-01, 1.797693134862e+308, 4.9630e-01, 9.8898e-03, + 2DIAGNOSTIC, 9, -4.846882473800e-01, 1.797693134862e+308, 5.0794e-01, 1.1641e-02, + 2DIAGNOSTIC, 10, -4.848043824099e-01, 7.759994777131e-04, 5.2253e-01, 1.4587e-02, + 2DIAGNOSTIC, 11, -4.848372932583e-01, 5.848980983668e-04, 5.3361e-01, 1.1080e-02, + 2DIAGNOSTIC, 12, -4.849124344458e-01, 4.092376122239e-04, 5.5020e-01, 1.6591e-02, + 2DIAGNOSTIC, 13, -4.849224412430e-01, 2.790600451194e-04, 5.6171e-01, 1.1508e-02, + 2DIAGNOSTIC, 14, -4.849210623133e-01, 1.767997900291e-04, 5.7326e-01, 1.1554e-02, + 2DIAGNOSTIC, 15, -4.848903352370e-01, 9.925997991628e-05, 5.8501e-01, 1.1750e-02, + 2DIAGNOSTIC, 16, -4.848773049277e-01, 6.431707365215e-05, 5.9565e-01, 1.0645e-02, + 2DIAGNOSTIC, 17, -4.848817779881e-01, 2.899804069550e-05, 6.0623e-01, 1.0579e-02, + 2DIAGNOSTIC, 18, -4.848872730906e-01, 1.104974146465e-05, 6.1669e-01, 1.0460e-02, + 2DIAGNOSTIC, 19, -4.848942814832e-01, 4.334174397921e-06, 6.2834e-01, 1.1648e-02, + 2DIAGNOSTIC, 20, -4.848866074153e-01, 1.249674463535e-06, 6.3997e-01, 1.1633e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.030294234360e-01, 1.797693134862e+308, 8.4503e-01, 2.0505e-01, + Elapsed time (stage 0): 8.7175e-01 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.587570284423e-01, 1.797693134862e+308, 3.4622e-02, 3.4621e-02, + 2DIAGNOSTIC, 2, -9.613215010804e-01, 1.797693134862e+308, 3.5883e-02, 1.2610e-03, + 2DIAGNOSTIC, 3, -9.706241361881e-01, 1.797693134862e+308, 3.7209e-02, 1.3261e-03, + 2DIAGNOSTIC, 4, -9.866023745763e-01, 1.797693134862e+308, 3.8716e-02, 1.5070e-03, + 2DIAGNOSTIC, 5, -9.921073002580e-01, 1.797693134862e+308, 4.0147e-02, 1.4310e-03, + 2DIAGNOSTIC, 6, -9.937008924926e-01, 1.797693134862e+308, 4.1360e-02, 1.2131e-03, + 2DIAGNOSTIC, 7, -9.975815743306e-01, 1.797693134862e+308, 4.2638e-02, 1.2779e-03, + 2DIAGNOSTIC, 8, -1.006263901509e+00, 1.797693134862e+308, 4.4089e-02, 1.4510e-03, + 2DIAGNOSTIC, 9, -1.023257939673e+00, 1.797693134862e+308, 4.5543e-02, 1.4541e-03, + 2DIAGNOSTIC, 10, -1.034865002666e+00, 4.602835079347e-03, 4.7700e-02, 2.1570e-03, + 2DIAGNOSTIC, 11, -1.042524666659e+00, 4.416253575631e-03, 4.9373e-02, 1.6730e-03, + 2DIAGNOSTIC, 12, -1.050353813782e+00, 4.113703973729e-03, 5.0841e-02, 1.4679e-03, + 2DIAGNOSTIC, 13, -1.054979913612e+00, 3.779975001214e-03, 5.2552e-02, 1.7109e-03, + 2DIAGNOSTIC, 14, -1.061271098502e+00, 3.593504677825e-03, 5.4026e-02, 1.4741e-03, + 2DIAGNOSTIC, 15, -1.066226801647e+00, 3.298255333108e-03, 5.5774e-02, 1.7481e-03, + 2DIAGNOSTIC, 16, -1.070287716673e+00, 2.839882175092e-03, 5.7483e-02, 1.7090e-03, + 2DIAGNOSTIC, 17, -1.071602010072e+00, 2.262827406514e-03, 5.9008e-02, 1.5252e-03, + 2DIAGNOSTIC, 18, -1.084271202952e+00, 1.868878090437e-03, 6.1374e-02, 2.3661e-03, + 2DIAGNOSTIC, 19, -1.088443387347e+00, 1.646411911607e-03, 6.4090e-02, 2.7161e-03, + 2DIAGNOSTIC, 20, -1.089801002079e+00, 1.472195194541e-03, 6.5605e-02, 1.5142e-03, + 2DIAGNOSTIC, 21, -1.091123454903e+00, 1.297240381293e-03, 6.7333e-02, 1.7281e-03, + 2DIAGNOSTIC, 22, -1.091312833511e+00, 1.118193844920e-03, 6.8794e-02, 1.4610e-03, + 2DIAGNOSTIC, 23, -1.092494805045e+00, 9.173126681078e-04, 7.0243e-02, 1.4491e-03, + 2DIAGNOSTIC, 24, -1.096748327051e+00, 7.658884402235e-04, 7.1720e-02, 1.4770e-03, + 2DIAGNOSTIC, 25, -1.100519387056e+00, 6.501431151540e-04, 7.3223e-02, 1.5030e-03, + 2DIAGNOSTIC, 26, -1.108023006197e+00, 6.048751651438e-04, 7.4696e-02, 1.4729e-03, + 2DIAGNOSTIC, 27, -1.118530574692e+00, 6.208913659023e-04, 7.6405e-02, 1.7090e-03, + 2DIAGNOSTIC, 28, -1.119470986097e+00, 7.062462875322e-04, 7.8086e-02, 1.6811e-03, + 2DIAGNOSTIC, 29, -1.119701506385e+00, 7.609103243166e-04, 7.9800e-02, 1.7140e-03, + 2DIAGNOSTIC, 30, -1.120831741923e+00, 7.627899257494e-04, 8.1684e-02, 1.8840e-03, + 2DIAGNOSTIC, 31, -1.120966693053e+00, 7.042085157010e-04, 8.3348e-02, 1.6639e-03, + 2DIAGNOSTIC, 32, -1.120253729378e+00, 5.776450609900e-04, 8.5021e-02, 1.6730e-03, + 2DIAGNOSTIC, 33, -1.120432788610e+00, 4.158677551240e-04, 8.6463e-02, 1.4420e-03, + 2DIAGNOSTIC, 34, -1.119179101401e+00, 2.494218924637e-04, 8.7938e-02, 1.4751e-03, + 2DIAGNOSTIC, 35, -1.119469355018e+00, 9.986536260569e-05, 8.9595e-02, 1.6570e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.093462250981e-01, 1.797693134862e+308, 1.3393e-01, 4.4339e-02, + 2DIAGNOSTIC, 2, -7.104385495962e-01, 1.797693134862e+308, 1.3666e-01, 2.7261e-03, + 2DIAGNOSTIC, 3, -7.126511113612e-01, 1.797693134862e+308, 1.3934e-01, 2.6770e-03, + 2DIAGNOSTIC, 4, -7.163622210716e-01, 1.797693134862e+308, 1.4206e-01, 2.7189e-03, + 2DIAGNOSTIC, 5, -7.216578719497e-01, 1.797693134862e+308, 1.4449e-01, 2.4371e-03, + 2DIAGNOSTIC, 6, -7.278265138753e-01, 1.797693134862e+308, 1.4692e-01, 2.4278e-03, + 2DIAGNOSTIC, 7, -7.320573542242e-01, 1.797693134862e+308, 1.4942e-01, 2.4960e-03, + 2DIAGNOSTIC, 8, -7.370383958850e-01, 1.797693134862e+308, 1.5188e-01, 2.4681e-03, + 2DIAGNOSTIC, 9, -7.394362719538e-01, 1.797693134862e+308, 1.5552e-01, 3.6309e-03, + 2DIAGNOSTIC, 10, -7.423489008415e-01, 3.288816490020e-03, 1.5820e-01, 2.6822e-03, + 2DIAGNOSTIC, 11, -7.434782731081e-01, 2.956562483369e-03, 1.6115e-01, 2.9519e-03, + 2DIAGNOSTIC, 12, -7.442711400737e-01, 2.477521253449e-03, 1.6443e-01, 3.2809e-03, + 2DIAGNOSTIC, 13, -7.446165402590e-01, 1.926849934076e-03, 1.6706e-01, 2.6340e-03, + 2DIAGNOSTIC, 14, -7.449915118362e-01, 1.393675727174e-03, 1.6993e-01, 2.8632e-03, + 2DIAGNOSTIC, 15, -7.450962125489e-01, 9.433296263535e-04, 1.7270e-01, 2.7759e-03, + 2DIAGNOSTIC, 16, -7.451544281453e-01, 6.139308866665e-04, 1.7563e-01, 2.9249e-03, + 2DIAGNOSTIC, 17, -7.452108055893e-01, 3.636070052111e-04, 1.7854e-01, 2.9099e-03, + 2DIAGNOSTIC, 18, -7.449448163186e-01, 2.090869307734e-04, 1.8345e-01, 4.9071e-03, + 2DIAGNOSTIC, 19, -7.448877364473e-01, 9.842225873108e-05, 1.8592e-01, 2.4722e-03, + 2DIAGNOSTIC, 20, -7.448414977450e-01, 4.501463637757e-05, 1.8848e-01, 2.5630e-03, + 2DIAGNOSTIC, 21, -7.448822825438e-01, 1.392953079127e-05, 1.9121e-01, 2.7292e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.463808801743e-01, 1.797693134862e+308, 2.5443e-01, 6.3223e-02, + 2DIAGNOSTIC, 2, -5.466562751836e-01, 1.797693134862e+308, 2.6672e-01, 1.2286e-02, + 2DIAGNOSTIC, 3, -5.470986892292e-01, 1.797693134862e+308, 2.7905e-01, 1.2332e-02, + 2DIAGNOSTIC, 4, -5.478313832233e-01, 1.797693134862e+308, 2.9140e-01, 1.2349e-02, + 2DIAGNOSTIC, 5, -5.492609546173e-01, 1.797693134862e+308, 3.0455e-01, 1.3146e-02, + 2DIAGNOSTIC, 6, -5.506212930291e-01, 1.797693134862e+308, 3.1754e-01, 1.2992e-02, + 2DIAGNOSTIC, 7, -5.520884573523e-01, 1.797693134862e+308, 3.3219e-01, 1.4654e-02, + 2DIAGNOSTIC, 8, -5.534016218542e-01, 1.797693134862e+308, 3.5236e-01, 2.0168e-02, + 2DIAGNOSTIC, 9, -5.535621588265e-01, 1.797693134862e+308, 3.6577e-01, 1.3411e-02, + 2DIAGNOSTIC, 10, -5.541644954059e-01, 1.059940540102e-03, 3.7808e-01, 1.2308e-02, + 2DIAGNOSTIC, 11, -5.547569001463e-01, 9.637016250219e-04, 3.9023e-01, 1.2150e-02, + 2DIAGNOSTIC, 12, -5.550853098940e-01, 8.224766538505e-04, 4.0423e-01, 1.4004e-02, + 2DIAGNOSTIC, 13, -5.555668504477e-01, 6.656608346122e-04, 4.2088e-01, 1.6649e-02, + 2DIAGNOSTIC, 14, -5.556339545696e-01, 5.002426572738e-04, 4.3466e-01, 1.3776e-02, + 2DIAGNOSTIC, 15, -5.556681988321e-01, 3.617250431807e-04, 4.4875e-01, 1.4092e-02, + 2DIAGNOSTIC, 16, -5.556926165133e-01, 2.512791826925e-04, 4.6184e-01, 1.3090e-02, + 2DIAGNOSTIC, 17, -5.557293069685e-01, 1.754380139037e-04, 4.7434e-01, 1.2504e-02, + 2DIAGNOSTIC, 18, -5.558266659707e-01, 1.324262947790e-04, 4.8691e-01, 1.2564e-02, + 2DIAGNOSTIC, 19, -5.559500879922e-01, 8.928422355697e-05, 5.0040e-01, 1.3496e-02, + 2DIAGNOSTIC, 20, -5.560818069025e-01, 6.100831462076e-05, 5.1571e-01, 1.5309e-02, + 2DIAGNOSTIC, 21, -5.562262785447e-01, 4.784524667737e-05, 5.3098e-01, 1.5266e-02, + 2DIAGNOSTIC, 22, -5.563507279729e-01, 4.180898572295e-05, 5.4481e-01, 1.3831e-02, + 2DIAGNOSTIC, 23, -5.563625232525e-01, 4.347571429836e-05, 5.5723e-01, 1.2418e-02, + 2DIAGNOSTIC, 24, -5.563539750428e-01, 4.232199863606e-05, 5.7103e-01, 1.3803e-02, + 2DIAGNOSTIC, 25, -5.563775829434e-01, 3.861145034630e-05, 5.9942e-01, 2.8391e-02, + 2DIAGNOSTIC, 26, -5.563793999536e-01, 3.215857664005e-05, 6.1161e-01, 1.2191e-02, + 2DIAGNOSTIC, 27, -5.563802918559e-01, 2.395434463995e-05, 6.2364e-01, 1.2026e-02, + 2DIAGNOSTIC, 28, -5.563734018995e-01, 1.585219970942e-05, 6.4015e-01, 1.6507e-02, + 2DIAGNOSTIC, 29, -5.563739705914e-01, 9.120108326793e-06, 6.5346e-01, 1.3313e-02, + 2DIAGNOSTIC, 30, -5.563705894474e-01, 4.225501904265e-06, 6.6534e-01, 1.1880e-02, + 2DIAGNOSTIC, 31, -5.563677607300e-01, 1.631265967021e-06, 6.7891e-01, 1.3571e-02, + 2DIAGNOSTIC, 32, -5.563685991497e-01, 1.150808959148e-06, 6.9159e-01, 1.2677e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.603564022181e-01, 1.797693134862e+308, 8.8096e-01, 1.8937e-01, + Elapsed time (stage 1): 9.0307e-01 + + +Total elapsed time: 1.7754e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:13:04 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 29 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 60 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 79.31% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 79.31% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[15030 8363 37497 7518 1493 2416 1470 190 2327 4767 8170 4311 + 2935 2422 1145 1391 164 163 0 0 0 0 0 251 + 0 0 655 0 0] +[95293 32854 12146 15969 19427 10816 1332 5490 6632 10128 6039 5014 + 5803 785 498 1825 582 1018 896 0 1551 0 330 666 + 242 0 225 0 287] +[ 0 7659 325 0 5011 3877 10985 0 1476 174 0 373 + 1037 0 967 14174 0 376 162 8740 4194 988 7526 13980 + 9917 0 14930 7940 0] +[ 627 789 2631 0 0 2584 287 681 10611 4124 4572 744 + 653 1242 5436 742 370 3892 11156 231 11444 13989 529 77058 + 955 188 168 58877 434] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:21:13 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:21:20 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:02 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:02 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:02 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:12 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:15 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC010 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:26:16 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.9000000953674316 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:26:41 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:29:37 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:29:38 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:30:55 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:30:56 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55aaf34b3d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [80.2585, 126.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55aaf332a730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f36849b5010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55aaf34b7020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.551, 62.0027, -109.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55aaf34bd0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f36812f6010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55aaf34cd840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [80.2585, 126.949, -124.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55aaf34b9890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f367c622010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55aaf34d13e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.551, 62.0027, -109.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55aaf34c0130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f3678f63010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.471661188678e-01, 1.797693134862e+308, 2.4578e-01, 2.4578e-01, + 2DIAGNOSTIC, 2, -4.484098643762e-01, 1.797693134862e+308, 2.4725e-01, 1.4651e-03, + 2DIAGNOSTIC, 3, -4.494882624772e-01, 1.797693134862e+308, 2.4881e-01, 1.5600e-03, + 2DIAGNOSTIC, 4, -4.495403302583e-01, 1.797693134862e+308, 2.5008e-01, 1.2670e-03, + 2DIAGNOSTIC, 5, -4.498358752291e-01, 1.797693134862e+308, 2.5148e-01, 1.4069e-03, + 2DIAGNOSTIC, 6, -4.499450052422e-01, 1.797693134862e+308, 2.5275e-01, 1.2619e-03, + 2DIAGNOSTIC, 7, -4.497786616554e-01, 1.797693134862e+308, 2.5394e-01, 1.1981e-03, + 2DIAGNOSTIC, 8, -4.499750773173e-01, 1.797693134862e+308, 2.5538e-01, 1.4338e-03, + 2DIAGNOSTIC, 9, -4.501823651624e-01, 1.797693134862e+308, 2.5665e-01, 1.2701e-03, + 2DIAGNOSTIC, 10, -4.508189641098e-01, 3.618189627924e-04, 2.5811e-01, 1.4589e-03, + 2DIAGNOSTIC, 11, -4.519340525657e-01, 3.001919440458e-04, 2.5996e-01, 1.8561e-03, + 2DIAGNOSTIC, 12, -4.521907890723e-01, 2.988577030511e-04, 2.6181e-01, 1.8501e-03, + 2DIAGNOSTIC, 13, -4.520043056424e-01, 3.151458084509e-04, 2.6344e-01, 1.6260e-03, + 2DIAGNOSTIC, 14, -4.515546938053e-01, 2.832565303183e-04, 2.6486e-01, 1.4212e-03, + 2DIAGNOSTIC, 15, -4.520151563456e-01, 2.616572302914e-04, 2.6627e-01, 1.4091e-03, + 2DIAGNOSTIC, 16, -4.549259309228e-01, 3.366141858022e-04, 2.6767e-01, 1.4029e-03, + 2DIAGNOSTIC, 17, -4.617300607678e-01, 6.142878969303e-04, 2.6926e-01, 1.5831e-03, + 2DIAGNOSTIC, 18, -5.596648240842e-01, 4.178128108898e-03, 2.7089e-01, 1.6379e-03, + 2DIAGNOSTIC, 19, -5.781356273122e-01, 7.407807918146e-03, 2.7232e-01, 1.4269e-03, + 2DIAGNOSTIC, 20, -5.817464204217e-01, 9.706333757563e-03, 2.7402e-01, 1.7018e-03, + 2DIAGNOSTIC, 21, -5.849960700924e-01, 1.100985090729e-02, 2.7616e-01, 2.1372e-03, + 2DIAGNOSTIC, 22, -5.878521352109e-01, 1.122623833373e-02, 2.7866e-01, 2.4981e-03, + 2DIAGNOSTIC, 23, -5.882432203537e-01, 1.034219374022e-02, 2.8015e-01, 1.4949e-03, + 2DIAGNOSTIC, 24, -5.893467938112e-01, 8.589253465261e-03, 2.8158e-01, 1.4329e-03, + 2DIAGNOSTIC, 25, -5.909647400830e-01, 6.285049982823e-03, 2.8325e-01, 1.6620e-03, + 2DIAGNOSTIC, 26, -5.921495497294e-01, 3.720768365924e-03, 2.8491e-01, 1.6608e-03, + 2DIAGNOSTIC, 27, -5.922926303631e-01, 1.124994376751e-03, 2.8633e-01, 1.4191e-03, + 2DIAGNOSTIC, 28, -5.932061870392e-01, 6.245685112275e-04, 2.8779e-01, 1.4648e-03, + 2DIAGNOSTIC, 29, -5.936998845422e-01, 4.716337289671e-04, 2.8921e-01, 1.4169e-03, + 2DIAGNOSTIC, 30, -5.960763088091e-01, 3.958656442664e-04, 2.9091e-01, 1.6990e-03, + 2DIAGNOSTIC, 31, -6.003601336364e-01, 4.208275885076e-04, 2.9285e-01, 1.9410e-03, + 2DIAGNOSTIC, 32, -6.017392996830e-01, 4.761624502835e-04, 2.9471e-01, 1.8599e-03, + 2DIAGNOSTIC, 33, -6.006200896057e-01, 4.713769973756e-04, 2.9630e-01, 1.5869e-03, + 2DIAGNOSTIC, 34, -6.006515539996e-01, 4.417901590100e-04, 2.9772e-01, 1.4260e-03, + 2DIAGNOSTIC, 35, -6.010692806464e-01, 4.030051409981e-04, 2.9915e-01, 1.4269e-03, + 2DIAGNOSTIC, 36, -6.023308392611e-01, 3.638487872113e-04, 3.0061e-01, 1.4570e-03, + 2DIAGNOSTIC, 37, -6.030480641313e-01, 3.045493851124e-04, 3.0224e-01, 1.6329e-03, + 2DIAGNOSTIC, 38, -6.032655468592e-01, 2.373876632318e-04, 3.0366e-01, 1.4200e-03, + 2DIAGNOSTIC, 39, -6.038740339972e-01, 1.672262998375e-04, 3.0535e-01, 1.6918e-03, + 2DIAGNOSTIC, 40, -6.041371253298e-01, 1.185577085587e-04, 3.0782e-01, 2.4700e-03, + 2DIAGNOSTIC, 41, -6.041578209986e-01, 1.162093599808e-04, 3.0921e-01, 1.3931e-03, + 2DIAGNOSTIC, 42, -6.043260817839e-01, 1.229587104866e-04, 3.1066e-01, 1.4448e-03, + 2DIAGNOSTIC, 43, -6.045767155860e-01, 1.072452991457e-04, 3.1216e-01, 1.5020e-03, + 2DIAGNOSTIC, 44, -6.047371279617e-01, 8.446174475348e-05, 3.1362e-01, 1.4639e-03, + 2DIAGNOSTIC, 45, -6.049509199789e-01, 6.185758957442e-05, 3.1502e-01, 1.3940e-03, + 2DIAGNOSTIC, 46, -6.058265475050e-01, 5.875012115921e-05, 3.1652e-01, 1.5011e-03, + 2DIAGNOSTIC, 47, -6.075958767083e-01, 7.769715903556e-05, 3.1797e-01, 1.4460e-03, + 2DIAGNOSTIC, 48, -6.105686452638e-01, 1.224431775153e-04, 3.2009e-01, 2.1288e-03, + 2DIAGNOSTIC, 49, -6.122079345403e-01, 1.767405848210e-04, 3.2162e-01, 1.5280e-03, + 2DIAGNOSTIC, 50, -6.126988924961e-01, 2.197619559203e-04, 3.2303e-01, 1.4122e-03, + 2DIAGNOSTIC, 51, -6.150689972031e-01, 2.645147005167e-04, 3.2540e-01, 2.3618e-03, + 2DIAGNOSTIC, 52, -6.154834519496e-01, 2.870681950775e-04, 3.2689e-01, 1.4961e-03, + 2DIAGNOSTIC, 53, -6.156791957793e-01, 2.853331366383e-04, 3.2854e-01, 1.6489e-03, + 2DIAGNOSTIC, 54, -6.162286083912e-01, 2.634433922370e-04, 3.3001e-01, 1.4648e-03, + 2DIAGNOSTIC, 55, -6.166567215635e-01, 2.233755138643e-04, 3.3178e-01, 1.7731e-03, + 2DIAGNOSTIC, 56, -6.202166389267e-01, 2.037572252575e-04, 3.3379e-01, 2.0161e-03, + 2DIAGNOSTIC, 57, -6.276043456912e-01, 2.459829146350e-04, 3.3583e-01, 2.0361e-03, + 2DIAGNOSTIC, 58, -6.292783062773e-01, 3.023464608776e-04, 3.3747e-01, 1.6391e-03, + 2DIAGNOSTIC, 59, -6.297003304801e-01, 3.463057634916e-04, 3.3931e-01, 1.8449e-03, + 2DIAGNOSTIC, 60, -6.298034381768e-01, 3.608483494087e-04, 3.4072e-01, 1.4009e-03, + 2DIAGNOSTIC, 61, -6.289238338314e-01, 3.521445989768e-04, 3.4219e-01, 1.4720e-03, + 2DIAGNOSTIC, 62, -6.290096850899e-01, 3.132249522720e-04, 3.4366e-01, 1.4760e-03, + 2DIAGNOSTIC, 63, -6.295821440283e-01, 2.516191989862e-04, 3.4516e-01, 1.4930e-03, + 2DIAGNOSTIC, 64, -6.297536820352e-01, 1.745498630416e-04, 3.4671e-01, 1.5521e-03, + 2DIAGNOSTIC, 65, -6.319827456744e-01, 1.040698017357e-04, 3.4989e-01, 3.1769e-03, + 2DIAGNOSTIC, 66, -6.326187639958e-01, 5.621540100225e-05, 3.5173e-01, 1.8399e-03, + 2DIAGNOSTIC, 67, -6.329248648228e-01, 6.188154899005e-05, 3.5348e-01, 1.7500e-03, + 2DIAGNOSTIC, 68, -6.333617865204e-01, 7.697363570443e-05, 3.5564e-01, 2.1639e-03, + 2DIAGNOSTIC, 69, -6.331179411283e-01, 8.533696274542e-05, 3.5715e-01, 1.5061e-03, + 2DIAGNOSTIC, 70, -6.335555995955e-01, 8.920489569347e-05, 3.5863e-01, 1.4839e-03, + 2DIAGNOSTIC, 71, -6.337645940911e-01, 7.956170670188e-05, 3.6013e-01, 1.4980e-03, + 2DIAGNOSTIC, 72, -6.339725280472e-01, 6.468328164857e-05, 3.6202e-01, 1.8890e-03, + 2DIAGNOSTIC, 73, -6.340405139356e-01, 4.861706225517e-05, 3.6364e-01, 1.6210e-03, + 2DIAGNOSTIC, 74, -6.341687171863e-01, 3.008778078671e-05, 3.6509e-01, 1.4529e-03, + 2DIAGNOSTIC, 75, -6.342478533365e-01, 2.437976097852e-05, 3.6658e-01, 1.4889e-03, + 2DIAGNOSTIC, 76, -6.343247940447e-01, 2.108135486704e-05, 3.6807e-01, 1.4880e-03, + 2DIAGNOSTIC, 77, -6.344009607602e-01, 1.826102738862e-05, 3.7046e-01, 2.3930e-03, + 2DIAGNOSTIC, 78, -6.350389743019e-01, 2.067624354891e-05, 3.7315e-01, 2.6920e-03, + 2DIAGNOSTIC, 79, -6.350746889692e-01, 1.961849430709e-05, 3.7505e-01, 1.8969e-03, + 2DIAGNOSTIC, 80, -6.352289212851e-01, 2.039659128205e-05, 3.7697e-01, 1.9221e-03, + 2DIAGNOSTIC, 81, -6.358962800248e-01, 2.454646419129e-05, 3.7886e-01, 1.8852e-03, + 2DIAGNOSTIC, 82, -6.355158178030e-01, 2.510886566249e-05, 3.8036e-01, 1.5001e-03, + 2DIAGNOSTIC, 83, -6.356037080096e-01, 2.424520447607e-05, 3.8245e-01, 2.0950e-03, + 2DIAGNOSTIC, 84, -6.356719498603e-01, 2.224827200496e-05, 3.8414e-01, 1.6870e-03, + 2DIAGNOSTIC, 85, -6.357202886221e-01, 1.890858449721e-05, 3.8585e-01, 1.7149e-03, + 2DIAGNOSTIC, 86, -6.360948601815e-01, 1.640969850448e-05, 3.8750e-01, 1.6420e-03, + 2DIAGNOSTIC, 87, -6.350348894768e-01, 6.798407737540e-06, 3.8924e-01, 1.7469e-03, + 2DIAGNOSTIC, 88, -6.353000613053e-01, 2.065477478795e-06, 3.9089e-01, 1.6460e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.111908799975e-01, 1.797693134862e+308, 6.4177e-01, 2.5088e-01, + 2DIAGNOSTIC, 2, -5.111448323262e-01, 1.797693134862e+308, 6.4392e-01, 2.1529e-03, + 2DIAGNOSTIC, 3, -5.134727996723e-01, 1.797693134862e+308, 6.4612e-01, 2.1980e-03, + 2DIAGNOSTIC, 4, -5.166712656162e-01, 1.797693134862e+308, 6.4823e-01, 2.1150e-03, + 2DIAGNOSTIC, 5, -5.184021051898e-01, 1.797693134862e+308, 6.5031e-01, 2.0740e-03, + 2DIAGNOSTIC, 6, -5.197947911615e-01, 1.797693134862e+308, 6.5230e-01, 1.9989e-03, + 2DIAGNOSTIC, 7, -5.211074141341e-01, 1.797693134862e+308, 6.5447e-01, 2.1620e-03, + 2DIAGNOSTIC, 8, -5.237040204550e-01, 1.797693134862e+308, 6.5640e-01, 1.9331e-03, + 2DIAGNOSTIC, 9, -5.279540873766e-01, 1.797693134862e+308, 6.5916e-01, 2.7580e-03, + 2DIAGNOSTIC, 10, -5.310494905137e-01, 2.412098047745e-03, 6.6163e-01, 2.4731e-03, + 2DIAGNOSTIC, 11, -5.310038692730e-01, 2.277770757677e-03, 6.6491e-01, 3.2790e-03, + 2DIAGNOSTIC, 12, -5.315042276652e-01, 1.986307847450e-03, 6.6698e-01, 2.0730e-03, + 2DIAGNOSTIC, 13, -5.330931187432e-01, 1.721991984372e-03, 6.6916e-01, 2.1770e-03, + 2DIAGNOSTIC, 14, -5.345986043183e-01, 1.516837365273e-03, 6.7133e-01, 2.1720e-03, + 2DIAGNOSTIC, 15, -5.362626948945e-01, 1.321642465833e-03, 6.7353e-01, 2.1980e-03, + 2DIAGNOSTIC, 16, -5.367651666992e-01, 1.096212201629e-03, 6.7635e-01, 2.8200e-03, + 2DIAGNOSTIC, 17, -5.375273181675e-01, 8.645706598771e-04, 6.7885e-01, 2.5048e-03, + 2DIAGNOSTIC, 18, -5.378409779787e-01, 6.636698958637e-04, 6.8140e-01, 2.5420e-03, + 2DIAGNOSTIC, 19, -5.377685612424e-01, 5.385669985996e-04, 6.8372e-01, 2.3241e-03, + 2DIAGNOSTIC, 20, -5.378018825934e-01, 4.611078195033e-04, 6.8622e-01, 2.4960e-03, + 2DIAGNOSTIC, 21, -5.376052761047e-01, 3.425815558663e-04, 6.8844e-01, 2.2221e-03, + 2DIAGNOSTIC, 22, -5.375951080385e-01, 2.149110747689e-04, 6.9061e-01, 2.1691e-03, + 2DIAGNOSTIC, 23, -5.377840036365e-01, 1.195489196171e-04, 6.9313e-01, 2.5239e-03, + 2DIAGNOSTIC, 24, -5.380104658763e-01, 5.910444459514e-05, 6.9561e-01, 2.4760e-03, + 2DIAGNOSTIC, 25, -5.380381127122e-01, 3.438817466107e-05, 6.9779e-01, 2.1870e-03, + 2DIAGNOSTIC, 26, -5.382523458326e-01, 2.305051732787e-05, 6.9997e-01, 2.1720e-03, + 2DIAGNOSTIC, 27, -5.386192935640e-01, 3.270689841798e-05, 7.0213e-01, 2.1670e-03, + 2DIAGNOSTIC, 28, -5.396643247825e-01, 6.445190393639e-05, 7.0432e-01, 2.1911e-03, + 2DIAGNOSTIC, 29, -5.405306950496e-01, 1.020929698861e-04, 7.0746e-01, 3.1331e-03, + 2DIAGNOSTIC, 30, -5.409417226114e-01, 1.355642767212e-04, 7.0964e-01, 2.1820e-03, + 2DIAGNOSTIC, 31, -5.413917659705e-01, 1.587729666030e-04, 7.1193e-01, 2.2879e-03, + 2DIAGNOSTIC, 32, -5.492996199058e-01, 2.971996285565e-04, 7.1525e-01, 3.3259e-03, + 2DIAGNOSTIC, 33, -5.557624492688e-01, 5.024175079073e-04, 7.1780e-01, 2.5430e-03, + 2DIAGNOSTIC, 34, -5.632403621894e-01, 7.664356417623e-04, 7.2019e-01, 2.3901e-03, + 2DIAGNOSTIC, 35, -5.649449995365e-01, 9.681077541707e-04, 7.2230e-01, 2.1110e-03, + 2DIAGNOSTIC, 36, -5.666494971201e-01, 1.096148901014e-03, 7.2495e-01, 2.6519e-03, + 2DIAGNOSTIC, 37, -5.673427065013e-01, 1.126826722850e-03, 7.2789e-01, 2.9449e-03, + 2DIAGNOSTIC, 38, -5.676649502687e-01, 1.065646923291e-03, 7.2996e-01, 2.0671e-03, + 2DIAGNOSTIC, 39, -5.688200548575e-01, 9.336798168073e-04, 7.3237e-01, 2.4040e-03, + 2DIAGNOSTIC, 40, -5.697242800769e-01, 7.385663925850e-04, 7.3512e-01, 2.7590e-03, + 2DIAGNOSTIC, 41, -5.698641417411e-01, 4.898604968818e-04, 7.3755e-01, 2.4211e-03, + 2DIAGNOSTIC, 42, -5.698889658903e-01, 3.056105532009e-04, 7.3967e-01, 2.1260e-03, + 2DIAGNOSTIC, 43, -5.702335989795e-01, 1.824910149433e-04, 7.4208e-01, 2.4121e-03, + 2DIAGNOSTIC, 44, -5.704999874287e-01, 1.396958876171e-04, 7.4418e-01, 2.0950e-03, + 2DIAGNOSTIC, 45, -5.705953204914e-01, 1.059130407482e-04, 7.4689e-01, 2.7099e-03, + 2DIAGNOSTIC, 46, -5.707266132177e-01, 8.454982462028e-05, 7.4932e-01, 2.4290e-03, + 2DIAGNOSTIC, 47, -5.707818636540e-01, 6.466363711201e-05, 7.5144e-01, 2.1231e-03, + 2DIAGNOSTIC, 48, -5.708155291139e-01, 4.312605777082e-05, 7.5387e-01, 2.4290e-03, + 2DIAGNOSTIC, 49, -5.709664504629e-01, 3.205831345355e-05, 7.5637e-01, 2.4972e-03, + 2DIAGNOSTIC, 50, -5.710101954498e-01, 2.829038193882e-05, 7.5856e-01, 2.1980e-03, + 2DIAGNOSTIC, 51, -5.719132220583e-01, 3.274310412302e-05, 7.6078e-01, 2.2161e-03, + 2DIAGNOSTIC, 52, -5.737212856382e-01, 5.198406324450e-05, 7.6329e-01, 2.5072e-03, + 2DIAGNOSTIC, 53, -5.743668702153e-01, 7.480188422034e-05, 7.6577e-01, 2.4791e-03, + 2DIAGNOSTIC, 54, -5.755870958955e-01, 1.040554918961e-04, 7.6888e-01, 3.1121e-03, + 2DIAGNOSTIC, 55, -5.763932659989e-01, 1.307212660702e-04, 7.7214e-01, 3.2561e-03, + 2DIAGNOSTIC, 56, -5.765113668956e-01, 1.460319219157e-04, 7.7470e-01, 2.5690e-03, + 2DIAGNOSTIC, 57, -5.765845211915e-01, 1.479033896513e-04, 7.7704e-01, 2.3310e-03, + 2DIAGNOSTIC, 58, -5.765785072948e-01, 1.358146871977e-04, 7.7934e-01, 2.3069e-03, + 2DIAGNOSTIC, 59, -5.767646206501e-01, 1.142558413270e-04, 7.8195e-01, 2.6052e-03, + 2DIAGNOSTIC, 60, -5.770059597191e-01, 8.483654597603e-05, 7.8417e-01, 2.2249e-03, + 2DIAGNOSTIC, 61, -5.777544186439e-01, 6.200862169830e-05, 7.8663e-01, 2.4590e-03, + 2DIAGNOSTIC, 62, -5.782760994764e-01, 5.335636490273e-05, 7.8883e-01, 2.1958e-03, + 2DIAGNOSTIC, 63, -5.796646694538e-01, 5.633348859130e-05, 7.9107e-01, 2.2440e-03, + 2DIAGNOSTIC, 64, -5.889115199531e-01, 1.376464061722e-04, 7.9395e-01, 2.8820e-03, + 2DIAGNOSTIC, 65, -5.943517745879e-01, 2.505049155218e-04, 7.9634e-01, 2.3861e-03, + 2DIAGNOSTIC, 66, -5.983690671856e-01, 3.674914201265e-04, 7.9932e-01, 2.9790e-03, + 2DIAGNOSTIC, 67, -5.993700283927e-01, 4.542952015056e-04, 8.0186e-01, 2.5380e-03, + 2DIAGNOSTIC, 68, -6.026802553423e-01, 5.199406798641e-04, 8.0412e-01, 2.2638e-03, + 2DIAGNOSTIC, 69, -6.136860173377e-01, 6.149154171299e-04, 8.0671e-01, 2.5930e-03, + 2DIAGNOSTIC, 70, -6.180028761030e-01, 6.780575745621e-04, 8.0967e-01, 2.9609e-03, + 2DIAGNOSTIC, 71, -6.258031578071e-01, 7.361128100183e-04, 8.1430e-01, 4.6301e-03, + 2DIAGNOSTIC, 72, -6.257152956197e-01, 7.254722430685e-04, 8.1670e-01, 2.3942e-03, + 2DIAGNOSTIC, 73, -6.260497082181e-01, 6.568397116993e-04, 8.1890e-01, 2.2061e-03, + 2DIAGNOSTIC, 74, -6.265002635917e-01, 5.922117124629e-04, 8.2112e-01, 2.2130e-03, + 2DIAGNOSTIC, 75, -6.275521749627e-01, 5.149395310017e-04, 8.2330e-01, 2.1870e-03, + 2DIAGNOSTIC, 76, -6.288251383698e-01, 4.256952726065e-04, 8.2580e-01, 2.5001e-03, + 2DIAGNOSTIC, 77, -6.294757614654e-01, 3.092833491148e-04, 8.2807e-01, 2.2690e-03, + 2DIAGNOSTIC, 78, -6.300343156788e-01, 1.905891008588e-04, 8.3035e-01, 2.2771e-03, + 2DIAGNOSTIC, 79, -6.315468384046e-01, 1.364567064547e-04, 8.3258e-01, 2.2330e-03, + 2DIAGNOSTIC, 80, -6.325690618211e-01, 1.025598903265e-04, 8.3489e-01, 2.3110e-03, + 2DIAGNOSTIC, 81, -6.343653259640e-01, 1.190919272420e-04, 8.3851e-01, 3.6130e-03, + 2DIAGNOSTIC, 82, -6.376129394449e-01, 1.429029230088e-04, 8.4159e-01, 3.0842e-03, + 2DIAGNOSTIC, 83, -6.391053154927e-01, 1.630162692873e-04, 8.4397e-01, 2.3742e-03, + 2DIAGNOSTIC, 84, -6.400320432214e-01, 1.750277665835e-04, 8.4632e-01, 2.3539e-03, + 2DIAGNOSTIC, 85, -6.416455925492e-01, 1.854734143517e-04, 8.4872e-01, 2.4028e-03, + 2DIAGNOSTIC, 86, -6.446811716917e-01, 2.024611361115e-04, 8.5113e-01, 2.4049e-03, + 2DIAGNOSTIC, 87, -6.729467953940e-01, 3.639762147514e-04, 8.5375e-01, 2.6250e-03, + 2DIAGNOSTIC, 88, -6.885701310359e-01, 5.726685425283e-04, 8.5722e-01, 3.4721e-03, + 2DIAGNOSTIC, 89, -6.908445145584e-01, 7.413182789201e-04, 8.5944e-01, 2.2101e-03, + 2DIAGNOSTIC, 90, -6.978847235382e-01, 8.810948279540e-04, 8.6190e-01, 2.4660e-03, + 2DIAGNOSTIC, 91, -7.009188806601e-01, 9.574623311810e-04, 8.6406e-01, 2.1629e-03, + 2DIAGNOSTIC, 92, -7.012734375298e-01, 9.559016522862e-04, 8.6682e-01, 2.7521e-03, + 2DIAGNOSTIC, 93, -7.028197989452e-01, 8.770957132214e-04, 8.6933e-01, 2.5091e-03, + 2DIAGNOSTIC, 94, -7.027361285518e-01, 7.218072810196e-04, 8.7190e-01, 2.5699e-03, + 2DIAGNOSTIC, 95, -7.041158754735e-01, 5.181899022153e-04, 8.7442e-01, 2.5260e-03, + 2DIAGNOSTIC, 96, -7.052296459053e-01, 2.872660155549e-04, 8.7704e-01, 2.6219e-03, + 2DIAGNOSTIC, 97, -7.082133207060e-01, 1.891103402856e-04, 8.7952e-01, 2.4779e-03, + 2DIAGNOSTIC, 98, -7.107629105328e-01, 1.649734515011e-04, 8.8224e-01, 2.7149e-03, + 2DIAGNOSTIC, 99, -7.106387793231e-01, 1.351103046173e-04, 8.8495e-01, 2.7111e-03, + 2DIAGNOSTIC, 100, -7.108756723005e-01, 1.280590868046e-04, 8.8755e-01, 2.6050e-03, + 2DIAGNOSTIC, 101, -7.107256888436e-01, 1.226144328797e-04, 8.9058e-01, 3.0320e-03, + 2DIAGNOSTIC, 102, -7.106672205731e-01, 1.064922011511e-04, 8.9371e-01, 3.1290e-03, + 2DIAGNOSTIC, 103, -7.107073663137e-01, 8.781565368552e-05, 8.9682e-01, 3.1028e-03, + 2DIAGNOSTIC, 104, -7.105525507214e-01, 6.006167957173e-05, 8.9938e-01, 2.5659e-03, + 2DIAGNOSTIC, 105, -7.102335493716e-01, 3.220687917415e-05, 9.0148e-01, 2.0971e-03, + 2DIAGNOSTIC, 106, -7.102835832306e-01, 6.924158193231e-06, 9.0359e-01, 2.1138e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.769939598477e-01, 1.797693134862e+308, 1.1724e+00, 2.6876e-01, + 2DIAGNOSTIC, 2, -5.785153841040e-01, 1.797693134862e+308, 1.1855e+00, 1.3166e-02, + 2DIAGNOSTIC, 3, -5.801344591533e-01, 1.797693134862e+308, 1.1986e+00, 1.3106e-02, + 2DIAGNOSTIC, 4, -5.810091121478e-01, 1.797693134862e+308, 1.2117e+00, 1.3085e-02, + 2DIAGNOSTIC, 5, -5.816485491630e-01, 1.797693134862e+308, 1.2248e+00, 1.3059e-02, + 2DIAGNOSTIC, 6, -5.822879142489e-01, 1.797693134862e+308, 1.2379e+00, 1.3098e-02, + 2DIAGNOSTIC, 7, -5.830591703498e-01, 1.797693134862e+308, 1.2529e+00, 1.5041e-02, + 2DIAGNOSTIC, 8, -5.834240121062e-01, 1.797693134862e+308, 1.2730e+00, 2.0122e-02, + 2DIAGNOSTIC, 9, -5.835635202185e-01, 1.797693134862e+308, 1.2864e+00, 1.3343e-02, + 2DIAGNOSTIC, 10, -5.844977014156e-01, 7.502774223032e-04, 1.3021e+00, 1.5748e-02, + 2DIAGNOSTIC, 11, -5.852057683220e-01, 5.913473309384e-04, 1.3188e+00, 1.6647e-02, + 2DIAGNOSTIC, 12, -5.856521834159e-01, 4.843473798388e-04, 1.3354e+00, 1.6668e-02, + 2DIAGNOSTIC, 13, -5.857883670463e-01, 4.160983887325e-04, 1.3477e+00, 1.2309e-02, + 2DIAGNOSTIC, 14, -5.859536235722e-01, 3.565887495812e-04, 1.3668e+00, 1.9052e-02, + 2DIAGNOSTIC, 15, -5.859499736682e-01, 2.928073959507e-04, 1.3807e+00, 1.3860e-02, + 2DIAGNOSTIC, 16, -5.859275418584e-01, 2.283240595033e-04, 1.3945e+00, 1.3795e-02, + 2DIAGNOSTIC, 17, -5.859017162111e-01, 1.719710379189e-04, 1.4064e+00, 1.1943e-02, + 2DIAGNOSTIC, 18, -5.858474154640e-01, 1.149978254895e-04, 1.4184e+00, 1.1961e-02, + 2DIAGNOSTIC, 19, -5.858006691853e-01, 5.559089749010e-05, 1.4313e+00, 1.2914e-02, + 2DIAGNOSTIC, 20, -5.858423772399e-01, 2.058408646264e-05, 1.4431e+00, 1.1835e-02, + 2DIAGNOSTIC, 21, -5.859229428274e-01, 5.192145178121e-06, 1.4552e+00, 1.2059e-02, + 2DIAGNOSTIC, 22, -5.860126620379e-01, 2.639929507435e-06, 1.4689e+00, 1.3775e-02, + 2DIAGNOSTIC, 23, -5.860514993268e-01, 3.799573809887e-06, 1.4828e+00, 1.3820e-02, + 2DIAGNOSTIC, 24, -5.860114116831e-01, 7.205247186427e-06, 1.4965e+00, 1.3772e-02, + 2DIAGNOSTIC, 25, -5.860069112928e-01, 9.660248850907e-06, 1.5104e+00, 1.3853e-02, + 2DIAGNOSTIC, 26, -5.859629354822e-01, 9.852748211442e-06, 1.5242e+00, 1.3790e-02, + 2DIAGNOSTIC, 27, -5.859556376135e-01, 8.626530210956e-06, 1.5363e+00, 1.2129e-02, + 2DIAGNOSTIC, 28, -5.859466274648e-01, 5.719604698473e-06, 1.5485e+00, 1.2194e-02, + 2DIAGNOSTIC, 29, -5.860191380536e-01, 3.033953675541e-06, 1.5650e+00, 1.6451e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.944146159913e-01, 1.797693134862e+308, 1.9992e+00, 4.3423e-01, + 2DIAGNOSTIC, 2, -4.946278034733e-01, 1.797693134862e+308, 2.0839e+00, 8.4699e-02, + 2DIAGNOSTIC, 3, -4.948869053471e-01, 1.797693134862e+308, 2.1674e+00, 8.3508e-02, + 2DIAGNOSTIC, 4, -4.952008702053e-01, 1.797693134862e+308, 2.2644e+00, 9.7014e-02, + 2DIAGNOSTIC, 5, -4.962355713881e-01, 1.797693134862e+308, 2.3736e+00, 1.0923e-01, + 2DIAGNOSTIC, 6, -4.963727398345e-01, 1.797693134862e+308, 2.5009e+00, 1.2731e-01, + 2DIAGNOSTIC, 7, -4.963822302994e-01, 1.797693134862e+308, 2.6199e+00, 1.1899e-01, + 2DIAGNOSTIC, 8, -4.963980206574e-01, 1.797693134862e+308, 2.7148e+00, 9.4839e-02, + 2DIAGNOSTIC, 9, -4.963913830498e-01, 1.797693134862e+308, 2.8363e+00, 1.2157e-01, + 2DIAGNOSTIC, 10, -4.963912954780e-01, 2.985815681899e-04, 2.9308e+00, 9.4425e-02, + 2DIAGNOSTIC, 11, -4.963910999538e-01, 2.108731071788e-04, 3.0523e+00, 1.2156e-01, + 2DIAGNOSTIC, 12, -4.963898799468e-01, 1.298694993875e-04, 3.1498e+00, 9.7493e-02, + 2DIAGNOSTIC, 13, -4.963887404619e-01, 6.146915353972e-05, 3.2465e+00, 9.6690e-02, + 2DIAGNOSTIC, 14, -4.963823206522e-01, 8.940861347173e-06, 3.3479e+00, 1.0138e-01, + 2DIAGNOSTIC, 15, -4.963810410608e-01, 2.165673746043e-06, 3.4318e+00, 8.3926e-02, + 2DIAGNOSTIC, 16, -4.963834245815e-01, 1.223470953132e-06, 3.5278e+00, 9.5994e-02, + Elapsed time (stage 0): 3.6605e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.924903517810e-01, 1.797693134862e+308, 2.1802e-01, 2.1802e-01, + 2DIAGNOSTIC, 2, -7.949136392358e-01, 1.797693134862e+308, 2.1994e-01, 1.9212e-03, + 2DIAGNOSTIC, 3, -7.963260364847e-01, 1.797693134862e+308, 2.2156e-01, 1.6150e-03, + 2DIAGNOSTIC, 4, -7.971424287826e-01, 1.797693134862e+308, 2.2278e-01, 1.2250e-03, + 2DIAGNOSTIC, 5, -8.011578213287e-01, 1.797693134862e+308, 2.2405e-01, 1.2660e-03, + 2DIAGNOSTIC, 6, -8.046694363691e-01, 1.797693134862e+308, 2.2532e-01, 1.2722e-03, + 2DIAGNOSTIC, 7, -8.095223958631e-01, 1.797693134862e+308, 2.2649e-01, 1.1680e-03, + 2DIAGNOSTIC, 8, -8.170038626633e-01, 1.797693134862e+308, 2.2775e-01, 1.2560e-03, + 2DIAGNOSTIC, 9, -8.347761153224e-01, 1.797693134862e+308, 2.2887e-01, 1.1201e-03, + 2DIAGNOSTIC, 10, -8.570084426497e-01, 4.218724040652e-03, 2.3063e-01, 1.7650e-03, + 2DIAGNOSTIC, 11, -8.818520180584e-01, 5.523742331604e-03, 2.3217e-01, 1.5430e-03, + 2DIAGNOSTIC, 12, -9.000495641186e-01, 6.678349449992e-03, 2.3403e-01, 1.8549e-03, + 2DIAGNOSTIC, 13, -8.989197365901e-01, 7.050296350195e-03, 2.3557e-01, 1.5380e-03, + 2DIAGNOSTIC, 14, -9.121010864985e-01, 7.067270090287e-03, 2.3718e-01, 1.6079e-03, + 2DIAGNOSTIC, 15, -9.176295671479e-01, 6.640528434916e-03, 2.3882e-01, 1.6401e-03, + 2DIAGNOSTIC, 16, -9.190003264247e-01, 5.761007016067e-03, 2.4074e-01, 1.9271e-03, + 2DIAGNOSTIC, 17, -9.187424911741e-01, 4.560382520896e-03, 2.4232e-01, 1.5769e-03, + 2DIAGNOSTIC, 18, -9.190714150425e-01, 3.231680910262e-03, 2.4375e-01, 1.4319e-03, + 2DIAGNOSTIC, 19, -9.187647725525e-01, 2.054813682579e-03, 2.4519e-01, 1.4350e-03, + 2DIAGNOSTIC, 20, -9.186303870362e-01, 1.167698860750e-03, 2.4677e-01, 1.5790e-03, + 2DIAGNOSTIC, 21, -9.181978463988e-01, 6.393282483897e-04, 2.4817e-01, 1.4071e-03, + 2DIAGNOSTIC, 22, -9.179152345117e-01, 3.741229871108e-04, 2.4973e-01, 1.5600e-03, + 2DIAGNOSTIC, 23, -9.181702125119e-01, 8.192676187369e-05, 2.5100e-01, 1.2701e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.834630216600e-01, 1.797693134862e+308, 4.6737e-01, 2.1636e-01, + 2DIAGNOSTIC, 2, -7.847556832366e-01, 1.797693134862e+308, 4.6977e-01, 2.4021e-03, + 2DIAGNOSTIC, 3, -7.882739193385e-01, 1.797693134862e+308, 4.7199e-01, 2.2171e-03, + 2DIAGNOSTIC, 4, -7.925400697532e-01, 1.797693134862e+308, 4.7436e-01, 2.3792e-03, + 2DIAGNOSTIC, 5, -7.946952686641e-01, 1.797693134862e+308, 4.7740e-01, 3.0310e-03, + 2DIAGNOSTIC, 6, -7.957414783599e-01, 1.797693134862e+308, 4.7955e-01, 2.1498e-03, + 2DIAGNOSTIC, 7, -7.973272270361e-01, 1.797693134862e+308, 4.8236e-01, 2.8141e-03, + 2DIAGNOSTIC, 8, -7.981958828937e-01, 1.797693134862e+308, 4.8520e-01, 2.8381e-03, + 2DIAGNOSTIC, 9, -7.989944573943e-01, 1.797693134862e+308, 4.8790e-01, 2.7039e-03, + 2DIAGNOSTIC, 10, -8.002119146875e-01, 1.384511387274e-03, 4.9120e-01, 3.2952e-03, + 2DIAGNOSTIC, 11, -8.005407116929e-01, 1.064997905032e-03, 4.9378e-01, 2.5842e-03, + 2DIAGNOSTIC, 12, -8.011015730863e-01, 7.582757188376e-04, 4.9691e-01, 3.1281e-03, + 2DIAGNOSTIC, 13, -8.016108906430e-01, 5.390055610316e-04, 4.9994e-01, 3.0339e-03, + 2DIAGNOSTIC, 14, -8.020320523969e-01, 4.209668622738e-04, 5.0433e-01, 4.3900e-03, + 2DIAGNOSTIC, 15, -8.021042511647e-01, 3.331572700225e-04, 5.0772e-01, 3.3839e-03, + 2DIAGNOSTIC, 16, -8.021726285109e-01, 2.504056859568e-04, 5.1101e-01, 3.2899e-03, + 2DIAGNOSTIC, 17, -8.026785063372e-01, 1.984257969348e-04, 5.1354e-01, 2.5380e-03, + 2DIAGNOSTIC, 18, -8.029931981830e-01, 1.569997371891e-04, 5.1653e-01, 2.9829e-03, + 2DIAGNOSTIC, 19, -8.037735177670e-01, 1.345766031423e-04, 5.1985e-01, 3.3181e-03, + 2DIAGNOSTIC, 20, -8.031023556970e-01, 1.116666642272e-04, 5.2219e-01, 2.3479e-03, + 2DIAGNOSTIC, 21, -8.037097905872e-01, 9.703831800573e-05, 5.2439e-01, 2.2008e-03, + 2DIAGNOSTIC, 22, -8.035673253581e-01, 8.110209225877e-05, 5.2740e-01, 3.0010e-03, + 2DIAGNOSTIC, 23, -8.035821320674e-01, 6.691435311434e-05, 5.3030e-01, 2.9089e-03, + 2DIAGNOSTIC, 24, -8.036044298870e-01, 5.439365321221e-05, 5.3322e-01, 2.9199e-03, + 2DIAGNOSTIC, 25, -8.036869690254e-01, 4.027969878043e-05, 5.3570e-01, 2.4750e-03, + 2DIAGNOSTIC, 26, -8.037217461029e-01, 2.490525764517e-05, 5.3815e-01, 2.4490e-03, + 2DIAGNOSTIC, 27, -8.035550142133e-01, 1.277926845410e-05, 5.4083e-01, 2.6820e-03, + 2DIAGNOSTIC, 28, -8.039378871288e-01, 9.110934466885e-06, 5.4352e-01, 2.6882e-03, + 2DIAGNOSTIC, 29, -8.035952484508e-01, 1.044528367843e-05, 5.4620e-01, 2.6860e-03, + 2DIAGNOSTIC, 30, -8.039915114000e-01, 7.445915361996e-06, 5.5417e-01, 7.9670e-03, + 2DIAGNOSTIC, 31, -8.039914908734e-01, 1.094331349248e-05, 5.5648e-01, 2.3041e-03, + 2DIAGNOSTIC, 32, -8.039915268356e-01, 1.171872272108e-05, 5.5885e-01, 2.3701e-03, + 2DIAGNOSTIC, 33, -8.039915876370e-01, 1.162089259683e-05, 5.6119e-01, 2.3460e-03, + 2DIAGNOSTIC, 34, -8.039916904142e-01, 1.073259849812e-05, 5.6350e-01, 2.3119e-03, + 2DIAGNOSTIC, 35, -8.039918641029e-01, 9.782185590900e-06, 5.6582e-01, 2.3172e-03, + 2DIAGNOSTIC, 36, -8.039921575052e-01, 8.410200855555e-06, 5.6825e-01, 2.4302e-03, + 2DIAGNOSTIC, 37, -8.039926527814e-01, 4.718778110591e-06, 5.7056e-01, 2.3110e-03, + 2DIAGNOSTIC, 38, -8.039934802053e-01, 4.575896455253e-06, 5.7285e-01, 2.2919e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.771386618335e-01, 1.797693134862e+308, 8.1372e-01, 2.4087e-01, + 2DIAGNOSTIC, 2, -6.785057716323e-01, 1.797693134862e+308, 8.2804e-01, 1.4321e-02, + 2DIAGNOSTIC, 3, -6.797828810464e-01, 1.797693134862e+308, 8.4138e-01, 1.3336e-02, + 2DIAGNOSTIC, 4, -6.810604155784e-01, 1.797693134862e+308, 8.5456e-01, 1.3182e-02, + 2DIAGNOSTIC, 5, -6.824757321606e-01, 1.797693134862e+308, 8.6781e-01, 1.3245e-02, + 2DIAGNOSTIC, 6, -6.840720492481e-01, 1.797693134862e+308, 8.8125e-01, 1.3445e-02, + 2DIAGNOSTIC, 7, -6.861499434712e-01, 1.797693134862e+308, 9.0488e-01, 2.3623e-02, + 2DIAGNOSTIC, 8, -6.871971337196e-01, 1.797693134862e+308, 9.1814e-01, 1.3261e-02, + 2DIAGNOSTIC, 9, -6.874440649272e-01, 1.797693134862e+308, 9.3334e-01, 1.5199e-02, + 2DIAGNOSTIC, 10, -6.876643068736e-01, 1.092332421181e-03, 9.6119e-01, 2.7853e-02, + 2DIAGNOSTIC, 11, -6.876798665107e-01, 8.756124411948e-04, 9.7772e-01, 1.6528e-02, + 2DIAGNOSTIC, 12, -6.876691411649e-01, 6.626969716950e-04, 9.9357e-01, 1.5851e-02, + 2DIAGNOSTIC, 13, -6.876814071943e-01, 4.638271471013e-04, 1.0073e+00, 1.3772e-02, + 2DIAGNOSTIC, 14, -6.876990021515e-01, 2.901255238444e-04, 1.0265e+00, 1.9157e-02, + 2DIAGNOSTIC, 15, -6.877066833543e-01, 1.525511584678e-04, 1.0411e+00, 1.4589e-02, + 2DIAGNOSTIC, 16, -6.876787826893e-01, 5.799974858176e-05, 1.0552e+00, 1.4105e-02, + 2DIAGNOSTIC, 17, -6.877141059992e-01, 2.049300476352e-05, 1.0700e+00, 1.4850e-02, + 2DIAGNOSTIC, 18, -6.877155401906e-01, 9.485437519136e-06, 1.0847e+00, 1.4649e-02, + 2DIAGNOSTIC, 19, -6.877625415460e-01, 5.194663911946e-06, 1.0990e+00, 1.4271e-02, + 2DIAGNOSTIC, 20, -6.878222523932e-01, 6.786660579322e-06, 1.1121e+00, 1.3139e-02, + 2DIAGNOSTIC, 21, -6.878671048394e-01, 8.934308417474e-06, 1.1273e+00, 1.5249e-02, + 2DIAGNOSTIC, 22, -6.879449441187e-01, 1.145249970720e-05, 1.1410e+00, 1.3679e-02, + 2DIAGNOSTIC, 23, -6.879867921538e-01, 1.375590609631e-05, 1.1569e+00, 1.5898e-02, + 2DIAGNOSTIC, 24, -6.880626647670e-01, 1.631203035195e-05, 1.1713e+00, 1.4407e-02, + 2DIAGNOSTIC, 25, -6.880711459730e-01, 1.751588139215e-05, 1.1839e+00, 1.2552e-02, + 2DIAGNOSTIC, 26, -6.881410710044e-01, 1.776675972692e-05, 1.1963e+00, 1.2370e-02, + 2DIAGNOSTIC, 27, -6.882004182291e-01, 1.788134217737e-05, 1.2122e+00, 1.5964e-02, + 2DIAGNOSTIC, 28, -6.882445764239e-01, 1.705903125995e-05, 1.2262e+00, 1.3964e-02, + 2DIAGNOSTIC, 29, -6.882840786867e-01, 1.601443319527e-05, 1.2414e+00, 1.5249e-02, + 2DIAGNOSTIC, 30, -6.882919822517e-01, 1.456306643474e-05, 1.2623e+00, 2.0842e-02, + 2DIAGNOSTIC, 31, -6.882710369202e-01, 1.223441860472e-05, 1.2762e+00, 1.3908e-02, + 2DIAGNOSTIC, 32, -6.882609987434e-01, 9.864135764245e-06, 1.2900e+00, 1.3812e-02, + 2DIAGNOSTIC, 33, -6.882751238022e-01, 7.475385310964e-06, 1.3074e+00, 1.7371e-02, + 2DIAGNOSTIC, 34, -6.882810467501e-01, 5.603546381742e-06, 1.3207e+00, 1.3334e-02, + 2DIAGNOSTIC, 35, -6.883102541664e-01, 3.830287237626e-06, 1.3339e+00, 1.3206e-02, + 2DIAGNOSTIC, 36, -6.883429268901e-01, 3.049760900039e-06, 1.3492e+00, 1.5335e-02, + 2DIAGNOSTIC, 37, -6.883798073027e-01, 3.171309148491e-06, 1.3687e+00, 1.9446e-02, + 2DIAGNOSTIC, 38, -6.883931823334e-01, 3.673612596004e-06, 1.3824e+00, 1.3673e-02, + 2DIAGNOSTIC, 39, -6.883974499606e-01, 4.341091443764e-06, 1.3962e+00, 1.3831e-02, + 2DIAGNOSTIC, 40, -6.883957447524e-01, 4.710591025612e-06, 1.4124e+00, 1.6168e-02, + 2DIAGNOSTIC, 41, -6.884608429185e-01, 5.134878147881e-06, 1.4308e+00, 1.8493e-02, + 2DIAGNOSTIC, 42, -6.884798913257e-01, 5.187346108090e-06, 1.4460e+00, 1.5155e-02, + 2DIAGNOSTIC, 43, -6.884832206070e-01, 4.987508523836e-06, 1.4624e+00, 1.6386e-02, + 2DIAGNOSTIC, 44, -6.884872000825e-01, 4.495640231302e-06, 1.4766e+00, 1.4177e-02, + 2DIAGNOSTIC, 45, -6.884887826164e-01, 3.945596631919e-06, 1.4909e+00, 1.4328e-02, + 2DIAGNOSTIC, 46, -6.885139393948e-01, 3.612427594731e-06, 1.5085e+00, 1.7587e-02, + 2DIAGNOSTIC, 47, -6.886474950803e-01, 4.500098627978e-06, 1.5221e+00, 1.3625e-02, + 2DIAGNOSTIC, 48, -6.887952685021e-01, 6.349870327250e-06, 1.5401e+00, 1.7964e-02, + 2DIAGNOSTIC, 49, -6.888487833511e-01, 8.057209920091e-06, 1.5617e+00, 2.1619e-02, + 2DIAGNOSTIC, 50, -6.888682658526e-01, 9.139027826250e-06, 1.5793e+00, 1.7656e-02, + 2DIAGNOSTIC, 51, -6.888683500923e-01, 9.900773273515e-06, 1.5949e+00, 1.5516e-02, + 2DIAGNOSTIC, 52, -6.888684226701e-01, 9.880934054209e-06, 1.6091e+00, 1.4253e-02, + 2DIAGNOSTIC, 53, -6.888488839294e-01, 8.825990971684e-06, 1.6224e+00, 1.3258e-02, + 2DIAGNOSTIC, 54, -6.888491670772e-01, 7.064530691551e-06, 1.6377e+00, 1.5310e-02, + 2DIAGNOSTIC, 55, -6.888694935856e-01, 4.929238806895e-06, 1.6528e+00, 1.5075e-02, + 2DIAGNOSTIC, 56, -6.888510590063e-01, 2.486320967193e-06, 1.6663e+00, 1.3565e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.763282741584e-01, 1.797693134862e+308, 2.0998e+00, 4.3352e-01, + 2DIAGNOSTIC, 2, -5.774408387623e-01, 1.797693134862e+308, 2.1989e+00, 9.9074e-02, + 2DIAGNOSTIC, 3, -5.783305542676e-01, 1.797693134862e+308, 2.2989e+00, 1.0000e-01, + 2DIAGNOSTIC, 4, -5.788409637854e-01, 1.797693134862e+308, 2.3978e+00, 9.8906e-02, + 2DIAGNOSTIC, 5, -5.791634384630e-01, 1.797693134862e+308, 2.4947e+00, 9.6873e-02, + 2DIAGNOSTIC, 6, -5.796231297780e-01, 1.797693134862e+308, 2.6273e+00, 1.3261e-01, + 2DIAGNOSTIC, 7, -5.797814676781e-01, 1.797693134862e+308, 2.7433e+00, 1.1595e-01, + 2DIAGNOSTIC, 8, -5.799234285197e-01, 1.797693134862e+308, 2.8443e+00, 1.0100e-01, + 2DIAGNOSTIC, 9, -5.805548018953e-01, 1.797693134862e+308, 2.9588e+00, 1.1458e-01, + 2DIAGNOSTIC, 10, -5.813728300366e-01, 4.643983554106e-04, 3.0750e+00, 1.1612e-01, + 2DIAGNOSTIC, 11, -5.816003707420e-01, 3.775689880683e-04, 3.1923e+00, 1.1734e-01, + 2DIAGNOSTIC, 12, -5.816051132202e-01, 3.171188185212e-04, 3.3070e+00, 1.1472e-01, + 2DIAGNOSTIC, 13, -5.816013567361e-01, 2.713021582237e-04, 3.4795e+00, 1.7246e-01, + 2DIAGNOSTIC, 14, -5.816016921774e-01, 2.251158559541e-04, 3.5817e+00, 1.0222e-01, + 2DIAGNOSTIC, 15, -5.816017146948e-01, 1.744533997382e-04, 3.6803e+00, 9.8567e-02, + 2DIAGNOSTIC, 16, -5.816017234471e-01, 1.284327535641e-04, 3.7889e+00, 1.0867e-01, + 2DIAGNOSTIC, 17, -5.816010112625e-01, 8.120395647438e-05, 3.9118e+00, 1.2281e-01, + 2DIAGNOSTIC, 18, -5.815997051646e-01, 3.561376597606e-05, 4.0077e+00, 9.5973e-02, + 2DIAGNOSTIC, 19, -5.815968723477e-01, 7.368339461550e-06, 4.1146e+00, 1.0690e-01, + 2DIAGNOSTIC, 20, -5.815982760725e-01, 1.330180435702e-06, 4.1970e+00, 8.2393e-02, + 2DIAGNOSTIC, 21, -5.815946014010e-01, 1.106431760156e-06, 4.2928e+00, 9.5815e-02, + Elapsed time (stage 1): 4.4238e+00 + + +Total elapsed time: 8.0869e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:31:07 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:31:07 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x565149eab4f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.551, 62.0027, -109.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x565149eb0fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc6606d9010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x565149eac850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.551, 62.0027, -109.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x565149ea9f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc65d01a010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x565149ec3b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.551, 62.0027, -109.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x565149eb0550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc65995b010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x565149ec8d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.551, 62.0027, -109.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x565149ec6c00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc65629c010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x565149ecaf70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.551, 62.0027, -109.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x565149ec93a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc652bdd010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x565149ecb540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [112.551, 62.0027, -109.248] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x565149ecb4d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7fc64f51e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.037578747157e-01, 1.797693134862e+308, 2.1659e-01, 2.1659e-01, + 2DIAGNOSTIC, 2, -6.071640476314e-01, 1.797693134862e+308, 2.1904e-01, 2.4459e-03, + 2DIAGNOSTIC, 3, -6.131118405545e-01, 1.797693134862e+308, 2.2138e-01, 2.3401e-03, + 2DIAGNOSTIC, 4, -6.226506419841e-01, 1.797693134862e+308, 2.2384e-01, 2.4571e-03, + 2DIAGNOSTIC, 5, -6.351317819646e-01, 1.797693134862e+308, 2.2632e-01, 2.4869e-03, + 2DIAGNOSTIC, 6, -6.440655020428e-01, 1.797693134862e+308, 2.2863e-01, 2.3079e-03, + 2DIAGNOSTIC, 7, -6.451465902098e-01, 1.797693134862e+308, 2.3085e-01, 2.2240e-03, + 2DIAGNOSTIC, 8, -6.451665561048e-01, 1.797693134862e+308, 2.3280e-01, 1.9469e-03, + 2DIAGNOSTIC, 9, -6.450438503398e-01, 1.797693134862e+308, 2.3484e-01, 2.0409e-03, + 2DIAGNOSTIC, 10, -6.450726840126e-01, 4.910665185707e-03, 2.3826e-01, 3.4170e-03, + 2DIAGNOSTIC, 11, -6.452296701986e-01, 3.542407022207e-03, 2.4115e-01, 2.8951e-03, + 2DIAGNOSTIC, 12, -6.451278779343e-01, 2.216786330420e-03, 2.4347e-01, 2.3141e-03, + 2DIAGNOSTIC, 13, -6.451722173701e-01, 1.106526475497e-03, 2.4602e-01, 2.5480e-03, + 2DIAGNOSTIC, 14, -6.451923883288e-01, 3.556411386398e-04, 2.4886e-01, 2.8398e-03, + 2DIAGNOSTIC, 15, -6.452017776809e-01, 3.928607015709e-05, 2.5108e-01, 2.2280e-03, + 2DIAGNOSTIC, 16, -6.452074329423e-01, 8.315096736655e-06, 2.5366e-01, 2.5780e-03, + 2DIAGNOSTIC, 17, -6.452126567953e-01, 8.975837943223e-06, 2.5592e-01, 2.2581e-03, + 2DIAGNOSTIC, 18, -6.452167023458e-01, 9.653930769210e-06, 2.5899e-01, 3.0720e-03, + 2DIAGNOSTIC, 19, -6.452187266639e-01, 6.674211452562e-06, 2.6149e-01, 2.4970e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.395726498200e-01, 1.797693134862e+308, 5.0487e-01, 2.4338e-01, + 2DIAGNOSTIC, 2, -5.409250152006e-01, 1.797693134862e+308, 5.1857e-01, 1.3698e-02, + 2DIAGNOSTIC, 3, -5.420320004920e-01, 1.797693134862e+308, 5.3408e-01, 1.5511e-02, + 2DIAGNOSTIC, 4, -5.423306335717e-01, 1.797693134862e+308, 5.5113e-01, 1.7048e-02, + 2DIAGNOSTIC, 5, -5.423610646392e-01, 1.797693134862e+308, 5.6655e-01, 1.5423e-02, + 2DIAGNOSTIC, 6, -5.423320587429e-01, 1.797693134862e+308, 5.8208e-01, 1.5526e-02, + 2DIAGNOSTIC, 7, -5.423299504967e-01, 1.797693134862e+308, 5.9760e-01, 1.5517e-02, + 2DIAGNOSTIC, 8, -5.423311305795e-01, 1.797693134862e+308, 6.1176e-01, 1.4162e-02, + 2DIAGNOSTIC, 9, -5.423328599887e-01, 1.797693134862e+308, 6.2588e-01, 1.4126e-02, + 2DIAGNOSTIC, 10, -5.423177432501e-01, 2.224082379855e-04, 6.4346e-01, 1.7577e-02, + 2DIAGNOSTIC, 11, -5.423338362397e-01, 8.135385202850e-05, 6.5987e-01, 1.6411e-02, + 2DIAGNOSTIC, 12, -5.423229156667e-01, 1.418345469266e-05, 6.7376e-01, 1.3888e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.545734644234e-01, 1.797693134862e+308, 1.0987e+00, 4.2495e-01, + 2DIAGNOSTIC, 2, -4.554749697529e-01, 1.797693134862e+308, 1.1921e+00, 9.3377e-02, + 2DIAGNOSTIC, 3, -4.561884550716e-01, 1.797693134862e+308, 1.2849e+00, 9.2811e-02, + 2DIAGNOSTIC, 4, -4.563760111473e-01, 1.797693134862e+308, 1.3792e+00, 9.4281e-02, + 2DIAGNOSTIC, 5, -4.564065768098e-01, 1.797693134862e+308, 1.5531e+00, 1.7390e-01, + 2DIAGNOSTIC, 6, -4.564060362119e-01, 1.797693134862e+308, 1.6592e+00, 1.0607e-01, + 2DIAGNOSTIC, 7, -4.564059552250e-01, 1.797693134862e+308, 1.7662e+00, 1.0708e-01, + 2DIAGNOSTIC, 8, -4.564043163048e-01, 1.797693134862e+308, 1.8707e+00, 1.0449e-01, + 2DIAGNOSTIC, 9, -4.564039118191e-01, 1.797693134862e+308, 1.9606e+00, 8.9843e-02, + 2DIAGNOSTIC, 10, -4.564039568688e-01, 1.781202655945e-04, 2.0657e+00, 1.0516e-01, + 2DIAGNOSTIC, 11, -4.564050265486e-01, 6.728834659106e-05, 2.1695e+00, 1.0374e-01, + 2DIAGNOSTIC, 12, -4.564045205686e-01, 1.502559640426e-05, 2.2742e+00, 1.0476e-01, + 2DIAGNOSTIC, 13, -4.564037192878e-01, 3.608121163692e-06, 2.3654e+00, 9.1154e-02, + 2DIAGNOSTIC, 14, -4.564032276734e-01, 2.004348933396e-06, 2.4695e+00, 1.0414e-01, + 2DIAGNOSTIC, 15, -4.564027841182e-01, 1.889299920732e-06, 2.5884e+00, 1.1888e-01, + 2DIAGNOSTIC, 16, -4.564032525202e-01, 1.805310789749e-06, 2.6932e+00, 1.0486e-01, + 2DIAGNOSTIC, 17, -4.564022033828e-01, 1.707566019818e-06, 2.7869e+00, 9.3681e-02, + 2DIAGNOSTIC, 18, -4.564013555196e-01, 1.552409641357e-06, 2.8798e+00, 9.2921e-02, + 2DIAGNOSTIC, 19, -4.563994361069e-01, 1.358533696011e-06, 2.9722e+00, 9.2358e-02, + 2DIAGNOSTIC, 20, -4.564007191989e-01, 1.254344146294e-06, 3.0656e+00, 9.3388e-02, + 2DIAGNOSTIC, 21, -4.564012324463e-01, 1.236050192831e-06, 3.1578e+00, 9.2229e-02, + 2DIAGNOSTIC, 22, -4.564041617725e-01, 1.314051604986e-06, 3.2514e+00, 9.3606e-02, + 2DIAGNOSTIC, 23, -4.564114492283e-01, 1.572895567868e-06, 3.3454e+00, 9.3972e-02, + 2DIAGNOSTIC, 24, -4.564121380980e-01, 1.794076642171e-06, 3.4523e+00, 1.0686e-01, + 2DIAGNOSTIC, 25, -4.564081707826e-01, 1.845176207736e-06, 3.5731e+00, 1.2089e-01, + 2DIAGNOSTIC, 26, -4.564090540973e-01, 1.875787888662e-06, 3.6788e+00, 1.0570e-01, + 2DIAGNOSTIC, 27, -4.564085961571e-01, 1.805217695584e-06, 3.7857e+00, 1.0688e-01, + 2DIAGNOSTIC, 28, -4.564080665120e-01, 1.647737267844e-06, 3.8822e+00, 9.6520e-02, + 2DIAGNOSTIC, 29, -4.564077556517e-01, 1.405290113284e-06, 3.9716e+00, 8.9345e-02, + 2DIAGNOSTIC, 30, -4.564062523379e-01, 1.149362093666e-06, 4.0481e+00, 7.6515e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.958715017613e-01, 1.797693134862e+308, 5.3733e+00, 1.3252e+00, + 2DIAGNOSTIC, 2, -3.959047366406e-01, 1.797693134862e+308, 5.9840e+00, 6.1070e-01, + 2DIAGNOSTIC, 3, -3.959087305564e-01, 1.797693134862e+308, 6.5452e+00, 5.6128e-01, + 2DIAGNOSTIC, 4, -3.959094460986e-01, 1.797693134862e+308, 7.1509e+00, 6.0564e-01, + 2DIAGNOSTIC, 5, -3.959083819237e-01, 1.797693134862e+308, 7.7231e+00, 5.7223e-01, + 2DIAGNOSTIC, 6, -3.959094706666e-01, 1.797693134862e+308, 8.2712e+00, 5.4810e-01, + 2DIAGNOSTIC, 7, -3.959099178898e-01, 1.797693134862e+308, 8.8757e+00, 6.0450e-01, + 2DIAGNOSTIC, 8, -3.959087456299e-01, 1.797693134862e+308, 9.4506e+00, 5.7493e-01, + 2DIAGNOSTIC, 9, -3.959081829444e-01, 1.797693134862e+308, 1.0150e+01, 6.9973e-01, + 2DIAGNOSTIC, 10, -3.959080099218e-01, 6.047454526426e-06, 1.0841e+01, 6.9067e-01, + 2DIAGNOSTIC, 11, -3.959079798919e-01, 3.020424085703e-06, 1.1447e+01, 6.0614e-01, + 2DIAGNOSTIC, 12, -3.959075305136e-01, 2.439269736698e-06, 1.2056e+01, 6.0877e-01, + 2DIAGNOSTIC, 13, -3.959074729208e-01, 2.184784501896e-06, 1.2722e+01, 6.6600e-01, + 2DIAGNOSTIC, 14, -3.959073664307e-01, 2.024835474901e-06, 1.3355e+01, 6.3276e-01, + 2DIAGNOSTIC, 15, -3.959072492203e-01, 1.850109472235e-06, 1.3895e+01, 5.4077e-01, + 2DIAGNOSTIC, 16, -3.959071526606e-01, 1.765109011106e-06, 1.4463e+01, 5.6753e-01, + 2DIAGNOSTIC, 17, -3.959071852502e-01, 1.732233167739e-06, 1.4987e+01, 5.2376e-01, + 2DIAGNOSTIC, 18, -3.959069149765e-01, 1.658818971954e-06, 1.5511e+01, 5.2463e-01, + 2DIAGNOSTIC, 19, -3.959068083967e-01, 1.578128544039e-06, 1.6025e+01, 5.1314e-01, + 2DIAGNOSTIC, 20, -3.959067295534e-01, 1.505308018124e-06, 1.6495e+01, 4.7020e-01, + 2DIAGNOSTIC, 21, -3.959066974549e-01, 1.445541854286e-06, 1.7083e+01, 5.8777e-01, + 2DIAGNOSTIC, 22, -3.959066519493e-01, 1.381442675939e-06, 1.7687e+01, 6.0425e-01, + 2DIAGNOSTIC, 23, -3.959067535016e-01, 1.330462254395e-06, 1.8236e+01, 5.4924e-01, + 2DIAGNOSTIC, 24, -3.959066302373e-01, 1.281842716687e-06, 1.8748e+01, 5.1169e-01, + 2DIAGNOSTIC, 25, -3.959064745236e-01, 1.233499970832e-06, 1.9396e+01, 6.4782e-01, + 2DIAGNOSTIC, 26, -3.959067173324e-01, 1.196563858039e-06, 1.9929e+01, 5.3313e-01, + 2DIAGNOSTIC, 27, -3.959064847899e-01, 1.159444432242e-06, 2.0527e+01, 5.9842e-01, + 2DIAGNOSTIC, 28, -3.959064110777e-01, 1.118114636864e-06, 2.1135e+01, 6.0783e-01, + 2DIAGNOSTIC, 29, -3.959062045926e-01, 1.073746801722e-06, 2.1730e+01, 5.9479e-01, + 2DIAGNOSTIC, 30, -3.959061143287e-01, 1.030608989018e-06, 2.2309e+01, 5.7902e-01, + Elapsed time (stage 0): 2.2659e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.328009445550e-01, 1.797693134862e+308, 1.8418e-01, 1.8418e-01, + 2DIAGNOSTIC, 2, -6.349930312778e-01, 1.797693134862e+308, 1.8605e-01, 1.8680e-03, + 2DIAGNOSTIC, 3, -6.377704140368e-01, 1.797693134862e+308, 1.8787e-01, 1.8201e-03, + 2DIAGNOSTIC, 4, -6.401675608936e-01, 1.797693134862e+308, 1.8976e-01, 1.8981e-03, + 2DIAGNOSTIC, 5, -6.417997121924e-01, 1.797693134862e+308, 1.9173e-01, 1.9631e-03, + 2DIAGNOSTIC, 6, -6.429912608983e-01, 1.797693134862e+308, 1.9370e-01, 1.9770e-03, + 2DIAGNOSTIC, 7, -6.439549176544e-01, 1.797693134862e+308, 1.9613e-01, 2.4240e-03, + 2DIAGNOSTIC, 8, -6.446492763524e-01, 1.797693134862e+308, 1.9864e-01, 2.5101e-03, + 2DIAGNOSTIC, 9, -6.450360547251e-01, 1.797693134862e+308, 2.0063e-01, 1.9870e-03, + 2DIAGNOSTIC, 10, -6.452392908982e-01, 1.245077336784e-03, 2.0276e-01, 2.1300e-03, + 2DIAGNOSTIC, 11, -6.459406866909e-01, 9.044392130953e-04, 2.0494e-01, 2.1861e-03, + 2DIAGNOSTIC, 12, -6.467804273365e-01, 6.498016678609e-04, 2.0741e-01, 2.4719e-03, + 2DIAGNOSTIC, 13, -6.474665711581e-01, 4.920864921600e-04, 2.1406e-01, 6.6450e-03, + 2DIAGNOSTIC, 14, -6.474665709896e-01, 3.875688815427e-04, 2.1615e-01, 2.0900e-03, + 2DIAGNOSTIC, 15, -6.474666299261e-01, 3.101212373387e-04, 2.1904e-01, 2.8930e-03, + 2DIAGNOSTIC, 16, -6.474667295533e-01, 2.466103857716e-04, 2.2196e-01, 2.9159e-03, + 2DIAGNOSTIC, 17, -6.474668979253e-01, 1.923338044396e-04, 2.2441e-01, 2.4488e-03, + 2DIAGNOSTIC, 18, -6.474671823656e-01, 1.432809087688e-04, 2.2659e-01, 2.1889e-03, + 2DIAGNOSTIC, 19, -6.474676625675e-01, 9.562666053789e-05, 2.2887e-01, 2.2759e-03, + 2DIAGNOSTIC, 20, -6.474684724260e-01, 4.856372301200e-05, 2.3113e-01, 2.2590e-03, + 2DIAGNOSTIC, 21, -6.474698330345e-01, 1.606164515881e-05, 2.3332e-01, 2.1911e-03, + 2DIAGNOSTIC, 22, -6.474721131696e-01, 1.656627856415e-06, 2.3551e-01, 2.1930e-03, + 2DIAGNOSTIC, 23, -6.474759159016e-01, 1.717717972916e-06, 2.3762e-01, 2.1050e-03, + 2DIAGNOSTIC, 24, -6.474821897961e-01, 1.856890988604e-06, 2.3972e-01, 2.1019e-03, + 2DIAGNOSTIC, 25, -6.474923648298e-01, 2.113966714991e-06, 2.4182e-01, 2.0969e-03, + 2DIAGNOSTIC, 26, -6.475085728153e-01, 2.545886913501e-06, 2.4397e-01, 2.1491e-03, + 2DIAGNOSTIC, 27, -6.475342481862e-01, 3.238709137716e-06, 2.4604e-01, 2.0761e-03, + 2DIAGNOSTIC, 28, -6.475703770880e-01, 4.253807605915e-06, 2.4813e-01, 2.0831e-03, + 2DIAGNOSTIC, 29, -6.476169334560e-01, 5.610187991084e-06, 2.5021e-01, 2.0809e-03, + 2DIAGNOSTIC, 30, -6.475313018906e-01, 5.194146590601e-06, 2.5231e-01, 2.0990e-03, + 2DIAGNOSTIC, 31, -6.475808217817e-01, 5.183467385005e-06, 2.5440e-01, 2.0919e-03, + 2DIAGNOSTIC, 32, -6.476210480638e-01, 5.334743196105e-06, 2.5651e-01, 2.1079e-03, + 2DIAGNOSTIC, 33, -6.478027316119e-01, 7.505291688407e-06, 2.5858e-01, 2.0719e-03, + 2DIAGNOSTIC, 34, -6.481508617352e-01, 1.346184284507e-05, 2.6093e-01, 2.3530e-03, + 2DIAGNOSTIC, 35, -6.484271601891e-01, 2.141929136697e-05, 2.6329e-01, 2.3601e-03, + 2DIAGNOSTIC, 36, -6.484492712197e-01, 2.743967998547e-05, 2.6590e-01, 2.6081e-03, + 2DIAGNOSTIC, 37, -6.485594870442e-01, 3.228160667592e-05, 2.6821e-01, 2.3150e-03, + 2DIAGNOSTIC, 38, -6.486240642570e-01, 3.498999224732e-05, 2.7051e-01, 2.2969e-03, + 2DIAGNOSTIC, 39, -6.484020578669e-01, 3.227985957184e-05, 2.7282e-01, 2.3079e-03, + 2DIAGNOSTIC, 40, -6.484178137888e-01, 2.599088451512e-05, 2.7538e-01, 2.5661e-03, + 2DIAGNOSTIC, 41, -6.484361606921e-01, 1.836433604005e-05, 2.7746e-01, 2.0769e-03, + 2DIAGNOSTIC, 42, -6.484387540643e-01, 9.844013031758e-06, 2.7954e-01, 2.0821e-03, + 2DIAGNOSTIC, 43, -6.484399234948e-01, 2.656956672353e-06, 2.8162e-01, 2.0719e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.384398171041e-01, 1.797693134862e+308, 4.8863e-01, 2.0701e-01, + 2DIAGNOSTIC, 2, -5.390783504011e-01, 1.797693134862e+308, 5.0284e-01, 1.4214e-02, + 2DIAGNOSTIC, 3, -5.395880999404e-01, 1.797693134862e+308, 5.1689e-01, 1.4050e-02, + 2DIAGNOSTIC, 4, -5.402254442454e-01, 1.797693134862e+308, 5.3119e-01, 1.4300e-02, + 2DIAGNOSTIC, 5, -5.410601871018e-01, 1.797693134862e+308, 5.4490e-01, 1.3703e-02, + 2DIAGNOSTIC, 6, -5.420727908187e-01, 1.797693134862e+308, 5.5876e-01, 1.3864e-02, + 2DIAGNOSTIC, 7, -5.432370636566e-01, 1.797693134862e+308, 5.7847e-01, 1.9711e-02, + 2DIAGNOSTIC, 8, -5.434449917441e-01, 1.797693134862e+308, 5.9033e-01, 1.1856e-02, + 2DIAGNOSTIC, 9, -5.436525715316e-01, 1.797693134862e+308, 6.0192e-01, 1.1597e-02, + 2DIAGNOSTIC, 10, -5.438704759284e-01, 7.226967449736e-04, 6.1695e-01, 1.5021e-02, + 2DIAGNOSTIC, 11, -5.439621837871e-01, 5.913307370684e-04, 6.2890e-01, 1.1952e-02, + 2DIAGNOSTIC, 12, -5.440972343011e-01, 4.623832076659e-04, 6.4764e-01, 1.8745e-02, + 2DIAGNOSTIC, 13, -5.442955552859e-01, 3.404174730438e-04, 6.6144e-01, 1.3801e-02, + 2DIAGNOSTIC, 14, -5.443472298094e-01, 2.310337066708e-04, 6.7562e-01, 1.4173e-02, + 2DIAGNOSTIC, 15, -5.444605962661e-01, 1.480629368115e-04, 6.9135e-01, 1.5732e-02, + 2DIAGNOSTIC, 16, -5.445703602315e-01, 9.789415320974e-05, 7.0884e-01, 1.7491e-02, + 2DIAGNOSTIC, 17, -5.446786772276e-01, 8.389812262127e-05, 7.2264e-01, 1.3798e-02, + 2DIAGNOSTIC, 18, -5.446814023197e-01, 6.984631923655e-05, 7.3855e-01, 1.5916e-02, + 2DIAGNOSTIC, 19, -5.446962316016e-01, 5.704566185243e-05, 7.5304e-01, 1.4488e-02, + 2DIAGNOSTIC, 20, -5.446977422053e-01, 4.615626736945e-05, 7.6653e-01, 1.3485e-02, + 2DIAGNOSTIC, 21, -5.447031700148e-01, 3.449904674198e-05, 7.8179e-01, 1.5265e-02, + 2DIAGNOSTIC, 22, -5.447051430189e-01, 2.395756282760e-05, 8.0298e-01, 2.1193e-02, + 2DIAGNOSTIC, 23, -5.447051686995e-01, 1.676920945166e-05, 8.1517e-01, 1.2186e-02, + 2DIAGNOSTIC, 24, -5.447053140805e-01, 9.862452861192e-06, 8.2860e-01, 1.3428e-02, + 2DIAGNOSTIC, 25, -5.447053617800e-01, 5.042411787434e-06, 8.4684e-01, 1.8245e-02, + 2DIAGNOSTIC, 26, -5.447053648688e-01, 2.389023029965e-06, 8.6714e-01, 2.0299e-02, + 2DIAGNOSTIC, 27, -5.447053649626e-01, 1.922789685548e-06, 8.8487e-01, 1.7724e-02, + 2DIAGNOSTIC, 28, -5.447053649797e-01, 1.464775980758e-06, 9.0397e-01, 1.9108e-02, + 2DIAGNOSTIC, 29, -5.447053649833e-01, 1.275956323391e-06, 9.2307e-01, 1.9101e-02, + 2DIAGNOSTIC, 30, -5.447053649839e-01, 1.107065810517e-06, 9.4253e-01, 1.9451e-02, + 2DIAGNOSTIC, 31, -5.447053649840e-01, 1.035518885167e-06, 9.6219e-01, 1.9663e-02, + 2DIAGNOSTIC, 32, -5.447053649840e-01, 1.000028503596e-06, 9.7890e-01, 1.6715e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.564059104690e-01, 1.797693134862e+308, 1.3596e+00, 3.8067e-01, + 2DIAGNOSTIC, 2, -4.574287595381e-01, 1.797693134862e+308, 1.4600e+00, 1.0046e-01, + 2DIAGNOSTIC, 3, -4.583595741904e-01, 1.797693134862e+308, 1.5623e+00, 1.0225e-01, + 2DIAGNOSTIC, 4, -4.588068092267e-01, 1.797693134862e+308, 1.6637e+00, 1.0141e-01, + 2DIAGNOSTIC, 5, -4.589684909342e-01, 1.797693134862e+308, 1.7701e+00, 1.0636e-01, + 2DIAGNOSTIC, 6, -4.591450233656e-01, 1.797693134862e+308, 1.8826e+00, 1.1256e-01, + 2DIAGNOSTIC, 7, -4.591832348045e-01, 1.797693134862e+308, 1.9962e+00, 1.1361e-01, + 2DIAGNOSTIC, 8, -4.592107688033e-01, 1.797693134862e+308, 2.1236e+00, 1.2734e-01, + 2DIAGNOSTIC, 9, -4.592523062624e-01, 1.797693134862e+308, 2.2392e+00, 1.1559e-01, + 2DIAGNOSTIC, 10, -4.593235248478e-01, 3.324523044450e-04, 2.3388e+00, 9.9599e-02, + 2DIAGNOSTIC, 11, -4.593364943723e-01, 1.821387359534e-04, 2.4532e+00, 1.1449e-01, + 2DIAGNOSTIC, 12, -4.593464155031e-01, 9.318602433396e-05, 2.5666e+00, 1.1334e-01, + 2DIAGNOSTIC, 13, -4.593489444760e-01, 5.387062410540e-05, 2.6667e+00, 1.0014e-01, + 2DIAGNOSTIC, 14, -4.593543889710e-01, 3.541779883059e-05, 2.7796e+00, 1.1283e-01, + 2DIAGNOSTIC, 15, -4.593611124546e-01, 2.312831629894e-05, 2.9354e+00, 1.5589e-01, + 2DIAGNOSTIC, 16, -4.593601279608e-01, 1.721890360216e-05, 3.0200e+00, 8.4561e-02, + 2DIAGNOSTIC, 17, -4.593606257661e-01, 1.204445835452e-05, 3.1152e+00, 9.5170e-02, + 2DIAGNOSTIC, 18, -4.593619937862e-01, 7.495479976131e-06, 3.4037e+00, 2.8852e-01, + 2DIAGNOSTIC, 19, -4.593619937836e-01, 4.186967474146e-06, 3.6781e+00, 2.7435e-01, + 2DIAGNOSTIC, 20, -4.593619937836e-01, 3.171421651398e-06, 3.8139e+00, 1.3584e-01, + 2DIAGNOSTIC, 21, -4.593619937836e-01, 2.483410742722e-06, 3.9271e+00, 1.1323e-01, + 2DIAGNOSTIC, 22, -4.593619937836e-01, 2.049504057182e-06, 4.0711e+00, 1.4398e-01, + 2DIAGNOSTIC, 23, -4.593619937836e-01, 1.661939470217e-06, 4.1866e+00, 1.1546e-01, + 2DIAGNOSTIC, 24, -4.593619937836e-01, 1.415893350482e-06, 4.3005e+00, 1.1396e-01, + 2DIAGNOSTIC, 25, -4.593619937836e-01, 1.349039156544e-06, 4.4144e+00, 1.1382e-01, + 2DIAGNOSTIC, 26, -4.593619937836e-01, 1.256812345196e-06, 4.5308e+00, 1.1646e-01, + 2DIAGNOSTIC, 27, -4.593619937836e-01, 1.178867734590e-06, 4.6450e+00, 1.1416e-01, + 2DIAGNOSTIC, 28, -4.593619937836e-01, 1.136740477012e-06, 4.7871e+00, 1.4210e-01, + 2DIAGNOSTIC, 29, -4.593619937836e-01, 1.097520150019e-06, 4.9174e+00, 1.3034e-01, + 2DIAGNOSTIC, 30, -4.593619937836e-01, 1.060915954518e-06, 5.0300e+00, 1.1263e-01, + 2DIAGNOSTIC, 31, -4.593619937836e-01, 1.026674581260e-06, 5.1591e+00, 1.2905e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.958195319795e-01, 1.797693134862e+308, 6.4194e+00, 1.2603e+00, + 2DIAGNOSTIC, 2, -3.960574176818e-01, 1.797693134862e+308, 7.0264e+00, 6.0698e-01, + 2DIAGNOSTIC, 3, -3.962129316852e-01, 1.797693134862e+308, 7.6179e+00, 5.9147e-01, + 2DIAGNOSTIC, 4, -3.964842544266e-01, 1.797693134862e+308, 8.5008e+00, 8.8295e-01, + 2DIAGNOSTIC, 5, -3.965125233966e-01, 1.797693134862e+308, 9.3296e+00, 8.2878e-01, + 2DIAGNOSTIC, 6, -3.965124593277e-01, 1.797693134862e+308, 1.0009e+01, 6.7951e-01, + 2DIAGNOSTIC, 7, -3.965132617771e-01, 1.797693134862e+308, 1.0893e+01, 8.8366e-01, + 2DIAGNOSTIC, 8, -3.965130102186e-01, 1.797693134862e+308, 1.1630e+01, 7.3763e-01, + 2DIAGNOSTIC, 9, -3.965129313926e-01, 1.797693134862e+308, 1.2232e+01, 6.0144e-01, + 2DIAGNOSTIC, 10, -3.965125966551e-01, 9.748977446936e-05, 1.2900e+01, 6.6791e-01, + 2DIAGNOSTIC, 11, -3.965126111337e-01, 5.096245463206e-05, 1.3570e+01, 6.7053e-01, + 2DIAGNOSTIC, 12, -3.965126039698e-01, 2.205075205677e-05, 1.4549e+01, 9.7893e-01, + 2DIAGNOSTIC, 13, -3.965126171410e-01, 4.003813210265e-06, 1.5215e+01, 6.6605e-01, + 2DIAGNOSTIC, 14, -3.965124856479e-01, 2.241837802341e-06, 1.5882e+01, 6.6677e-01, + 2DIAGNOSTIC, 15, -3.965123522992e-01, 2.063284765708e-06, 1.6560e+01, 6.7794e-01, + 2DIAGNOSTIC, 16, -3.965122190805e-01, 1.902457158434e-06, 1.7138e+01, 5.7779e-01, + 2DIAGNOSTIC, 17, -3.965120954470e-01, 1.797148000700e-06, 1.7673e+01, 5.3547e-01, + 2DIAGNOSTIC, 18, -3.965119878880e-01, 1.696056179223e-06, 1.8259e+01, 5.8594e-01, + 2DIAGNOSTIC, 19, -3.965120550346e-01, 1.612237965937e-06, 1.8867e+01, 6.0793e-01, + 2DIAGNOSTIC, 20, -3.965123153330e-01, 1.539841563390e-06, 1.9553e+01, 6.8621e-01, + 2DIAGNOSTIC, 21, -3.965123025183e-01, 1.478906941632e-06, 2.0250e+01, 6.9622e-01, + 2DIAGNOSTIC, 22, -3.965124006081e-01, 1.429960270603e-06, 2.0853e+01, 6.0319e-01, + 2DIAGNOSTIC, 23, -3.965124185870e-01, 1.387858955773e-06, 2.1462e+01, 6.0884e-01, + 2DIAGNOSTIC, 24, -3.965125503276e-01, 1.348811735885e-06, 2.2068e+01, 6.0593e-01, + 2DIAGNOSTIC, 25, -3.965127554812e-01, 1.312598452222e-06, 2.2659e+01, 5.9154e-01, + 2DIAGNOSTIC, 26, -3.965125123986e-01, 1.264983892690e-06, 2.3361e+01, 7.0188e-01, + 2DIAGNOSTIC, 27, -3.965126493887e-01, 1.217835314947e-06, 2.4106e+01, 7.4541e-01, + 2DIAGNOSTIC, 28, -3.965124166480e-01, 1.161520569622e-06, 2.4754e+01, 6.4811e-01, + 2DIAGNOSTIC, 29, -3.965123235244e-01, 1.105941468633e-06, 2.5293e+01, 5.3837e-01, + 2DIAGNOSTIC, 30, -3.965122669825e-01, 1.058116274676e-06, 2.5983e+01, 6.9066e-01, + 2DIAGNOSTIC, 31, -3.965123747072e-01, 1.015772024236e-06, 2.6656e+01, 6.7266e-01, + Elapsed time (stage 1): 2.7012e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.125890475280e-01, 1.797693134862e+308, 2.4536e-01, 2.4536e-01, + 1DIAGNOSTIC, 2, -9.215558111093e-01, 1.797693134862e+308, 3.4062e-01, 9.5262e-02, + 1DIAGNOSTIC, 3, -9.294090952409e-01, 1.797693134862e+308, 4.3799e-01, 9.7371e-02, + 1DIAGNOSTIC, 4, -9.353914090416e-01, 1.797693134862e+308, 5.3688e-01, 9.8887e-02, + 1DIAGNOSTIC, 5, -9.405213522976e-01, 1.797693134862e+308, 6.3934e-01, 1.0246e-01, + 1DIAGNOSTIC, 6, -9.445062713781e-01, 1.797693134862e+308, 7.3947e-01, 1.0012e-01, + 1DIAGNOSTIC, 7, -9.476820673593e-01, 1.797693134862e+308, 8.3989e-01, 1.0042e-01, + 1DIAGNOSTIC, 8, -9.505129371785e-01, 1.797693134862e+308, 9.3526e-01, 9.5370e-02, + 1DIAGNOSTIC, 9, -9.529675873318e-01, 1.797693134862e+308, 1.0305e+00, 9.5273e-02, + 1DIAGNOSTIC, 10, -9.549504057321e-01, 2.757978119659e-03, 1.1267e+00, 9.6127e-02, + 1DIAGNOSTIC, 11, -9.564261337156e-01, 2.055209133278e-03, 1.2241e+00, 9.7419e-02, + 1DIAGNOSTIC, 12, -9.576160287668e-01, 1.539647972529e-03, 1.3218e+00, 9.7710e-02, + 1DIAGNOSTIC, 13, -9.584584032653e-01, 1.165229120478e-03, 1.4195e+00, 9.7664e-02, + 1DIAGNOSTIC, 14, -9.590836614529e-01, 8.796193590795e-04, 1.5152e+00, 9.5783e-02, + 1DIAGNOSTIC, 15, -9.586107215932e-01, 6.446588613328e-04, 1.6149e+00, 9.9630e-02, + 1DIAGNOSTIC, 16, -9.592048521065e-01, 4.661770280536e-04, 1.7193e+00, 1.0442e-01, + 1DIAGNOSTIC, 17, -9.587495710964e-01, 3.132363112115e-04, 1.8260e+00, 1.0673e-01, + 1DIAGNOSTIC, 18, -9.592585423487e-01, 2.038735663596e-04, 1.9305e+00, 1.0452e-01, + 1DIAGNOSTIC, 19, -9.587509562846e-01, 1.174982217204e-04, 2.0310e+00, 1.0048e-01, + 1DIAGNOSTIC, 20, -9.592109772580e-01, 6.571919388822e-05, 2.1328e+00, 1.0179e-01, + 1DIAGNOSTIC, 21, -9.586958196316e-01, 2.620396565552e-05, 2.2310e+00, 9.8237e-02, + 1DIAGNOSTIC, 22, -9.591355600383e-01, 1.006044038858e-05, 2.3297e+00, 9.8658e-02, + 1DIAGNOSTIC, 23, -9.586348234451e-01, -1.419298469481e-06, 2.4376e+00, 1.0785e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.208132509392e-01, 1.797693134862e+308, 3.3051e+00, 8.6749e-01, + 1DIAGNOSTIC, 2, -9.248323464867e-01, 1.797693134862e+308, 3.9736e+00, 6.6856e-01, + 1DIAGNOSTIC, 3, -9.287796686634e-01, 1.797693134862e+308, 4.6445e+00, 6.7090e-01, + 1DIAGNOSTIC, 4, -9.322001746549e-01, 1.797693134862e+308, 5.3048e+00, 6.6028e-01, + 1DIAGNOSTIC, 5, -9.345500251720e-01, 1.797693134862e+308, 5.9640e+00, 6.5922e-01, + 1DIAGNOSTIC, 6, -9.364802723338e-01, 1.797693134862e+308, 6.6043e+00, 6.4024e-01, + 1DIAGNOSTIC, 7, -9.380961909131e-01, 1.797693134862e+308, 7.2553e+00, 6.5110e-01, + 1DIAGNOSTIC, 8, -9.393890139753e-01, 1.797693134862e+308, 7.9052e+00, 6.4989e-01, + 1DIAGNOSTIC, 9, -9.404257291465e-01, 1.797693134862e+308, 8.5439e+00, 6.3863e-01, + 1DIAGNOSTIC, 10, -9.413562914079e-01, 1.363394658497e-03, 9.2060e+00, 6.6217e-01, + 1DIAGNOSTIC, 11, -9.421913622479e-01, 1.016168155086e-03, 9.8732e+00, 6.6718e-01, + 1DIAGNOSTIC, 12, -9.429769713642e-01, 7.563572817891e-04, 1.0548e+01, 6.7529e-01, + 1DIAGNOSTIC, 13, -9.437056270966e-01, 5.764537870967e-04, 1.1199e+01, 6.5084e-01, + 1DIAGNOSTIC, 14, -9.443921465023e-01, 4.584658281126e-04, 1.1842e+01, 6.4286e-01, + 1DIAGNOSTIC, 15, -9.450504927721e-01, 3.748053771358e-04, 1.2500e+01, 6.5814e-01, + 1DIAGNOSTIC, 16, -9.456760617511e-01, 3.153152663788e-04, 1.3162e+01, 6.6157e-01, + 1DIAGNOSTIC, 17, -9.462686595435e-01, 2.729161740557e-04, 1.3809e+01, 6.4674e-01, + 1DIAGNOSTIC, 18, -9.468386169567e-01, 2.412113231295e-04, 1.4442e+01, 6.3366e-01, + 1DIAGNOSTIC, 19, -9.473786997069e-01, 2.154950015445e-04, 1.5106e+01, 6.6409e-01, + 1DIAGNOSTIC, 20, -9.478799275873e-01, 1.939000650237e-04, 1.5756e+01, 6.4948e-01, + 1DIAGNOSTIC, 21, -9.483527989004e-01, 1.750673579377e-04, 1.6416e+01, 6.6029e-01, + 1DIAGNOSTIC, 22, -9.487964328952e-01, 1.584431602729e-04, 1.7091e+01, 6.7462e-01, + 1DIAGNOSTIC, 23, -9.492238975134e-01, 1.435920638742e-04, 1.7740e+01, 6.4947e-01, + 1DIAGNOSTIC, 24, -9.496198276254e-01, 1.301080198836e-04, 1.8385e+01, 6.4458e-01, + 1DIAGNOSTIC, 25, -9.500065815732e-01, 1.180897333457e-04, 1.9019e+01, 6.3455e-01, + 1DIAGNOSTIC, 26, -9.503674342034e-01, 1.073286765408e-04, 1.9675e+01, 6.5520e-01, + 1DIAGNOSTIC, 27, -9.507003161168e-01, 9.759013557320e-05, 2.0329e+01, 6.5485e-01, + 1DIAGNOSTIC, 28, -9.510069998883e-01, 8.878632715521e-05, 2.1003e+01, 6.7383e-01, + 1DIAGNOSTIC, 29, -9.512926854347e-01, 8.079984917226e-05, 2.1664e+01, 6.6047e-01, + 1DIAGNOSTIC, 30, -9.515574841233e-01, 7.341528900646e-05, 2.2333e+01, 6.6926e-01, + 1DIAGNOSTIC, 31, -9.518008744981e-01, 6.653818265785e-05, 2.3004e+01, 6.7126e-01, + 1DIAGNOSTIC, 32, -9.520187707505e-01, 6.003656223281e-05, 2.3668e+01, 6.6406e-01, + 1DIAGNOSTIC, 33, -9.522295319722e-01, 5.409139048852e-05, 2.4347e+01, 6.7865e-01, + 1DIAGNOSTIC, 34, -9.524254043492e-01, 4.862855769223e-05, 2.5020e+01, 6.7352e-01, + 1DIAGNOSTIC, 35, -9.526078026846e-01, 4.378177841514e-05, 2.5695e+01, 6.7404e-01, + 1DIAGNOSTIC, 36, -9.527784610202e-01, 3.951875961952e-05, 2.6355e+01, 6.6043e-01, + 1DIAGNOSTIC, 37, -9.529240133805e-01, 3.565433725083e-05, 2.7004e+01, 6.4867e-01, + 1DIAGNOSTIC, 38, -9.530721306523e-01, 3.224017139757e-05, 2.7644e+01, 6.3997e-01, + 1DIAGNOSTIC, 39, -9.532122106310e-01, 2.925028151993e-05, 2.8286e+01, 6.4230e-01, + 1DIAGNOSTIC, 40, -9.533425339294e-01, 2.663070771172e-05, 2.8931e+01, 6.4551e-01, + 1DIAGNOSTIC, 41, -9.534626912882e-01, 2.430940535781e-05, 2.9601e+01, 6.6946e-01, + 1DIAGNOSTIC, 42, -9.535771274442e-01, 2.220286659946e-05, 3.0237e+01, 6.3618e-01, + 1DIAGNOSTIC, 43, -9.536851163885e-01, 2.034685617580e-05, 3.0895e+01, 6.5799e-01, + 1DIAGNOSTIC, 44, -9.537874905636e-01, 1.871148784718e-05, 3.1577e+01, 6.8153e-01, + 1DIAGNOSTIC, 45, -9.538835193030e-01, 1.726348366985e-05, 3.2264e+01, 6.8731e-01, + 1DIAGNOSTIC, 46, -9.539745027869e-01, 1.598501715500e-05, 3.2937e+01, 6.7359e-01, + 1DIAGNOSTIC, 47, -9.540608698875e-01, 1.476026667094e-05, 3.3620e+01, 6.8228e-01, + 1DIAGNOSTIC, 48, -9.541418756536e-01, 1.365325256274e-05, 3.4297e+01, 6.7689e-01, + 1DIAGNOSTIC, 49, -9.542161809386e-01, 1.264418688764e-05, 3.4966e+01, 6.6939e-01, + 1DIAGNOSTIC, 50, -9.542889000006e-01, 1.173078522684e-05, 3.5629e+01, 6.6318e-01, + 1DIAGNOSTIC, 51, -9.543564886298e-01, 1.088053987631e-05, 3.6302e+01, 6.7268e-01, + 1DIAGNOSTIC, 52, -9.544168576292e-01, 1.007532265909e-05, 3.6970e+01, 6.6820e-01, + 1DIAGNOSTIC, 53, -9.544765469163e-01, 9.330715859214e-06, 3.7629e+01, 6.5939e-01, + 1DIAGNOSTIC, 54, -9.545280675533e-01, 8.620068221957e-06, 3.8285e+01, 6.5507e-01, + 1DIAGNOSTIC, 55, -9.545753935750e-01, 7.936566910460e-06, 3.8970e+01, 6.8544e-01, + 1DIAGNOSTIC, 56, -9.546206544318e-01, 7.291649605001e-06, 3.9636e+01, 6.6599e-01, + 1DIAGNOSTIC, 57, -9.546630006436e-01, 6.692268853355e-06, 4.0297e+01, 6.6142e-01, + 1DIAGNOSTIC, 58, -9.546961568392e-01, 6.106854031334e-06, 4.0981e+01, 6.8386e-01, + 1DIAGNOSTIC, 59, -9.547315916453e-01, 5.558441817228e-06, 4.1652e+01, 6.7126e-01, + 1DIAGNOSTIC, 60, -9.547661472794e-01, 5.075254062431e-06, 4.2337e+01, 6.8442e-01, + 1DIAGNOSTIC, 61, -9.547968933613e-01, 4.647807488042e-06, 4.3019e+01, 6.8234e-01, + 1DIAGNOSTIC, 62, -9.548250869850e-01, 4.259622899898e-06, 4.3702e+01, 6.8225e-01, + 1DIAGNOSTIC, 63, -9.548512618096e-01, 3.927611815325e-06, 4.4374e+01, 6.7249e-01, + 1DIAGNOSTIC, 64, -9.548755264485e-01, 3.627421706832e-06, 4.5048e+01, 6.7359e-01, + 1DIAGNOSTIC, 65, -9.548982080214e-01, 3.353376126371e-06, 4.5726e+01, 6.7824e-01, + 1DIAGNOSTIC, 66, -9.549183252916e-01, 3.104607859711e-06, 4.6367e+01, 6.4114e-01, + 1DIAGNOSTIC, 67, -9.549303054177e-01, 2.851255356030e-06, 4.7034e+01, 6.6714e-01, + 1DIAGNOSTIC, 68, -9.549472990950e-01, 2.595443241542e-06, 4.7703e+01, 6.6845e-01, + 1DIAGNOSTIC, 69, -9.549619372613e-01, 2.356237296806e-06, 4.8359e+01, 6.5628e-01, + 1DIAGNOSTIC, 70, -9.549782564172e-01, 2.156124971986e-06, 4.9037e+01, 6.7858e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.179950425459e-01, 1.797693134862e+308, 5.4660e+01, 5.6227e+00, + 1DIAGNOSTIC, 2, -9.207051364708e-01, 1.797693134862e+308, 5.9997e+01, 5.3368e+00, + 1DIAGNOSTIC, 3, -9.230345357126e-01, 1.797693134862e+308, 6.5349e+01, 5.3518e+00, + 1DIAGNOSTIC, 4, -9.252752308709e-01, 1.797693134862e+308, 7.0643e+01, 5.2938e+00, + 1DIAGNOSTIC, 5, -9.274928511051e-01, 1.797693134862e+308, 7.5970e+01, 5.3270e+00, + 1DIAGNOSTIC, 6, -9.296706160511e-01, 1.797693134862e+308, 8.1294e+01, 5.3243e+00, + 1DIAGNOSTIC, 7, -9.317248248094e-01, 1.797693134862e+308, 8.6616e+01, 5.3224e+00, + 1DIAGNOSTIC, 8, -9.334867673711e-01, 1.797693134862e+308, 9.1932e+01, 5.3154e+00, + 1DIAGNOSTIC, 9, -9.350037801363e-01, 1.797693134862e+308, 9.7271e+01, 5.3397e+00, + 1DIAGNOSTIC, 10, -9.363444631892e-01, 1.275601350778e-03, 1.0261e+02, 5.3386e+00, + 1DIAGNOSTIC, 11, -9.374338317867e-01, 1.068860815218e-03, 1.0801e+02, 5.4037e+00, + 1DIAGNOSTIC, 12, -9.384323328199e-01, 8.946595968473e-04, 1.1335e+02, 5.3385e+00, + 1DIAGNOSTIC, 13, -9.392480065068e-01, 7.399522122341e-04, 1.1872e+02, 5.3673e+00, + 1DIAGNOSTIC, 14, -9.400121001816e-01, 6.053237926539e-04, 1.2410e+02, 5.3766e+00, + 1DIAGNOSTIC, 15, -9.407045467147e-01, 4.921857564620e-04, 1.2948e+02, 5.3883e+00, + 1DIAGNOSTIC, 16, -9.413316324809e-01, 4.011150092387e-04, 1.3482e+02, 5.3394e+00, + 1DIAGNOSTIC, 17, -9.419052725607e-01, 3.306494995973e-04, 1.4020e+02, 5.3720e+00, + 1DIAGNOSTIC, 18, -9.424296187425e-01, 2.759286946687e-04, 1.4556e+02, 5.3604e+00, + 1DIAGNOSTIC, 19, -9.429167338270e-01, 2.333139752028e-04, 1.5091e+02, 5.3529e+00, + 1DIAGNOSTIC, 20, -9.433649027806e-01, 2.003657107716e-04, 1.5625e+02, 5.3436e+00, + 1DIAGNOSTIC, 21, -9.437738889805e-01, 1.734734058356e-04, 1.6163e+02, 5.3821e+00, + 1DIAGNOSTIC, 22, -9.441497994285e-01, 1.517713023498e-04, 1.6701e+02, 5.3725e+00, + 1DIAGNOSTIC, 23, -9.444978582438e-01, 1.330880303306e-04, 1.7236e+02, 5.3503e+00, + 1DIAGNOSTIC, 24, -9.448178233476e-01, 1.171766022880e-04, 1.7771e+02, 5.3490e+00, + 1DIAGNOSTIC, 25, -9.451180927249e-01, 1.035772431379e-04, 1.8309e+02, 5.3794e+00, + 1DIAGNOSTIC, 26, -9.453984949898e-01, 9.187281631139e-05, 1.8842e+02, 5.3348e+00, + 1DIAGNOSTIC, 27, -9.456516487459e-01, 8.167991983267e-05, 1.9378e+02, 5.3624e+00, + 1DIAGNOSTIC, 28, -9.458771719606e-01, 7.264949524347e-05, 1.9912e+02, 5.3403e+00, + 1DIAGNOSTIC, 29, -9.460744444319e-01, 6.456025395304e-05, 2.0448e+02, 5.3594e+00, + 1DIAGNOSTIC, 30, -9.462476379448e-01, 5.721493607204e-05, 2.0982e+02, 5.3355e+00, + 1DIAGNOSTIC, 31, -9.463994240728e-01, 5.044427789342e-05, 2.1519e+02, 5.3750e+00, + 1DIAGNOSTIC, 32, -9.465376436700e-01, 4.422380251370e-05, 2.2054e+02, 5.3507e+00, + 1DIAGNOSTIC, 33, -9.466565071103e-01, 3.851525461147e-05, 2.2590e+02, 5.3567e+00, + 1DIAGNOSTIC, 34, -9.467728309582e-01, 3.341931949705e-05, 2.3122e+02, 5.3223e+00, + 1DIAGNOSTIC, 35, -9.468827886980e-01, 2.903343601604e-05, 2.3662e+02, 5.3977e+00, + 1DIAGNOSTIC, 36, -9.469882187152e-01, 2.542123486688e-05, 2.4198e+02, 5.3604e+00, + 1DIAGNOSTIC, 37, -9.470886032480e-01, 2.252560384661e-05, 2.4735e+02, 5.3648e+00, + 1DIAGNOSTIC, 38, -9.471879214854e-01, 2.027531902620e-05, 2.5270e+02, 5.3506e+00, + 1DIAGNOSTIC, 39, -9.472837578905e-01, 1.853380635103e-05, 2.5810e+02, 5.4037e+00, + 1DIAGNOSTIC, 40, -9.473792761510e-01, 1.719644323216e-05, 2.6345e+02, 5.3543e+00, + 1DIAGNOSTIC, 41, -9.474718091662e-01, 1.613806205930e-05, 2.6884e+02, 5.3907e+00, + 1DIAGNOSTIC, 42, -9.475615037335e-01, 1.528525039940e-05, 2.7420e+02, 5.3565e+00, + 1DIAGNOSTIC, 43, -9.476526791784e-01, 1.454255852096e-05, 2.7957e+02, 5.3654e+00, + 1DIAGNOSTIC, 44, -9.477412386028e-01, 1.390369699813e-05, 2.8492e+02, 5.3514e+00, + 1DIAGNOSTIC, 45, -9.478320804271e-01, 1.336441014337e-05, 2.9028e+02, 5.3598e+00, + 1DIAGNOSTIC, 46, -9.479254123689e-01, 1.292703768791e-05, 2.9561e+02, 5.3338e+00, + 1DIAGNOSTIC, 47, -9.480191116501e-01, 1.256852613191e-05, 3.0100e+02, 5.3916e+00, + 1DIAGNOSTIC, 48, -9.481133128986e-01, 1.228880460236e-05, 3.0636e+02, 5.3600e+00, + 1DIAGNOSTIC, 49, -9.482067036512e-01, 1.205804357765e-05, 3.1173e+02, 5.3626e+00, + 1DIAGNOSTIC, 50, -9.482963100332e-01, 1.184688434353e-05, 3.1707e+02, 5.3489e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.180331883105e-01, 1.797693134862e+308, 3.6131e+02, 4.4239e+01, + 1DIAGNOSTIC, 2, -9.185399000789e-01, 1.797693134862e+308, 4.0454e+02, 4.3224e+01, + 1DIAGNOSTIC, 3, -9.193061212780e-01, 1.797693134862e+308, 4.4777e+02, 4.3229e+01, + 1DIAGNOSTIC, 4, -9.201403909805e-01, 1.797693134862e+308, 4.9115e+02, 4.3383e+01, + 1DIAGNOSTIC, 5, -9.209428132779e-01, 1.797693134862e+308, 5.3432e+02, 4.3165e+01, + 1DIAGNOSTIC, 6, -9.217394585652e-01, 1.797693134862e+308, 5.7756e+02, 4.3246e+01, + 1DIAGNOSTIC, 7, -9.225747231559e-01, 1.797693134862e+308, 6.2106e+02, 4.3498e+01, + 1DIAGNOSTIC, 8, -9.234137412838e-01, 1.797693134862e+308, 6.6429e+02, 4.3235e+01, + 1DIAGNOSTIC, 9, -9.242507409108e-01, 1.797693134862e+308, 7.0750e+02, 4.3204e+01, + 1DIAGNOSTIC, 10, -9.250760663131e-01, 5.023819841088e-04, 7.5076e+02, 4.3265e+01, + 1DIAGNOSTIC, 11, -9.258805781042e-01, 4.670172464798e-04, 7.9421e+02, 4.3451e+01, + 1DIAGNOSTIC, 12, -9.266927039900e-01, 4.293366138987e-04, 8.3773e+02, 4.3517e+01, + 1DIAGNOSTIC, 13, -9.275145678959e-01, 3.960577860567e-04, 8.8128e+02, 4.3546e+01, + 1DIAGNOSTIC, 14, -9.283012702154e-01, 3.669931328699e-04, 9.2456e+02, 4.3280e+01, + 1DIAGNOSTIC, 15, -9.289901951702e-01, 3.387448518737e-04, 9.6814e+02, 4.3585e+01, + 1DIAGNOSTIC, 16, -9.297483092259e-01, 3.127487087449e-04, 1.0116e+03, 4.3471e+01, + 1DIAGNOSTIC, 17, -9.304600549438e-01, 2.888261245749e-04, 1.0551e+03, 4.3456e+01, + 1DIAGNOSTIC, 18, -9.310050027739e-01, 2.643511453781e-04, 1.0985e+03, 4.3465e+01, + 1DIAGNOSTIC, 19, -9.314328134367e-01, 2.383637703409e-04, 1.1421e+03, 4.3519e+01, + 1DIAGNOSTIC, 20, -9.317841064673e-01, 2.108986064346e-04, 1.1855e+03, 4.3427e+01, + Elapsed time (stage 2): 1186 + + +Total elapsed time: 1236 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:24 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-T1map_to-fsnative_InverseWarped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:24 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:27 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:31 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:34 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:34 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19098 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:34 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:37 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:37 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19148 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:38 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:41 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19192 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:41 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19197 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:41 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:22 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:24 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:24 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:25 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:26 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:28 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:28 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:29 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:30 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:32 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:32 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:42 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:53 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC010 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:53 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC010 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:53 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC010 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:54 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 20022 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:55 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:56 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 20066 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:57 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:57 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC010_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 70.183 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/logs/proc_func_19-03-2024-25438.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:54:53 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC010 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/QC/sub-PNC010_ses-01_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC010* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 70.233 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC010_ses-01 +========================reprocessing without filter=================== +sub-PNC010_ses-02 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC010 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC010 Session: ses-02 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC010 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC010 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:55:14 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:55:14 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz is 36.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:57:17 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:59:19 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:59:34 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.59 (mm) at sub-brick 2 +++ Max delta displ in automask = 0.52 (mm) at sub-brick 204 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:12:06 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:12:25 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz is 36.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:14:25 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:16:27 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz is 36.000000 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:18:29 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.722 -2.637 2.126 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.4 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -1.025 -4.963 3.895 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.3 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:23:04 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983051776885986,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:23:31 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x5636fc0dca50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [108.102, 67.7529, -105.613] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5636fbf53730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5636fc0f3350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5636fc0e3600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.8093, 125.469, -122.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5636fc0e5e40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5636fc8eff50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x5636fc8ee270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [108.102, 67.7529, -105.613] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5636fc0e2640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5636fd41a1c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x5636fc8eda00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [75.8093, 125.469, -122.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x5636fc0e9390) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x5636fdc14300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.882080392968e-01, 1.797693134862e+308, 4.1859e-02, 4.1859e-02, + 2DIAGNOSTIC, 2, -6.896795416929e-01, 1.797693134862e+308, 4.3057e-02, 1.1981e-03, + 2DIAGNOSTIC, 3, -6.920556149683e-01, 1.797693134862e+308, 4.4339e-02, 1.2820e-03, + 2DIAGNOSTIC, 4, -6.961953458371e-01, 1.797693134862e+308, 4.5570e-02, 1.2310e-03, + 2DIAGNOSTIC, 5, -7.012181609811e-01, 1.797693134862e+308, 4.6795e-02, 1.2250e-03, + 2DIAGNOSTIC, 6, -7.288724929481e-01, 1.797693134862e+308, 4.8100e-02, 1.3051e-03, + 2DIAGNOSTIC, 7, -7.488733686947e-01, 1.797693134862e+308, 4.9606e-02, 1.5059e-03, + 2DIAGNOSTIC, 8, -8.003170123977e-01, 1.797693134862e+308, 5.1287e-02, 1.6809e-03, + 2DIAGNOSTIC, 9, -8.075551901281e-01, 1.797693134862e+308, 5.4133e-02, 2.8460e-03, + 2DIAGNOSTIC, 10, -8.095297995973e-01, 1.272177872140e-02, 5.5751e-02, 1.6179e-03, + 2DIAGNOSTIC, 11, -8.124381488270e-01, 1.228012393756e-02, 5.7265e-02, 1.5140e-03, + 2DIAGNOSTIC, 12, -8.148177761732e-01, 1.092866869990e-02, 5.8697e-02, 1.4319e-03, + 2DIAGNOSTIC, 13, -8.158970668682e-01, 8.904375225230e-03, 6.0159e-02, 1.4629e-03, + 2DIAGNOSTIC, 14, -8.163641646260e-01, 6.516581315424e-03, 6.1643e-02, 1.4832e-03, + 2DIAGNOSTIC, 15, -8.167608655193e-01, 4.018750174596e-03, 6.3059e-02, 1.4160e-03, + 2DIAGNOSTIC, 16, -8.176208159588e-01, 2.150843806981e-03, 6.4775e-02, 1.7169e-03, + 2DIAGNOSTIC, 17, -8.181711656793e-01, 7.353157452817e-04, 6.6231e-02, 1.4551e-03, + 2DIAGNOSTIC, 18, -8.174966505949e-01, 4.542803732051e-04, 6.8636e-02, 2.4059e-03, + 2DIAGNOSTIC, 19, -8.177609276303e-01, 3.084875883467e-04, 7.0073e-02, 1.4369e-03, + 2DIAGNOSTIC, 20, -8.179068983369e-01, 1.874256394829e-04, 7.1512e-02, 1.4391e-03, + 2DIAGNOSTIC, 21, -8.181420829106e-01, 1.145251031390e-04, 7.3203e-02, 1.6901e-03, + 2DIAGNOSTIC, 22, -8.182700588753e-01, 7.908753263476e-05, 7.4889e-02, 1.6861e-03, + 2DIAGNOSTIC, 23, -8.184534695517e-01, 5.983022011882e-05, 7.6874e-02, 1.9851e-03, + 2DIAGNOSTIC, 24, -8.188594621830e-01, 5.006942116418e-05, 7.8413e-02, 1.5390e-03, + 2DIAGNOSTIC, 25, -8.189726009205e-01, 4.335562268803e-05, 7.9918e-02, 1.5049e-03, + 2DIAGNOSTIC, 26, -8.191847045098e-01, 4.786232428525e-05, 8.1397e-02, 1.4789e-03, + 2DIAGNOSTIC, 27, -8.200460453771e-01, 6.681883962440e-05, 8.3099e-02, 1.7021e-03, + 2DIAGNOSTIC, 28, -8.203928166838e-01, 7.361783604652e-05, 8.7778e-02, 4.6792e-03, + 2DIAGNOSTIC, 29, -8.203933207177e-01, 7.634312919069e-05, 8.9770e-02, 1.9922e-03, + 2DIAGNOSTIC, 30, -8.203958419184e-01, 7.369823580634e-05, 9.1717e-02, 1.9472e-03, + 2DIAGNOSTIC, 31, -8.203996610679e-01, 6.717477486926e-05, 9.3540e-02, 1.8229e-03, + 2DIAGNOSTIC, 32, -8.204050571624e-01, 5.613987501331e-05, 9.5009e-02, 1.4689e-03, + 2DIAGNOSTIC, 33, -8.204118814113e-01, 4.246634439110e-05, 9.6488e-02, 1.4789e-03, + 2DIAGNOSTIC, 34, -8.204193068215e-01, 3.016794792796e-05, 9.7965e-02, 1.4770e-03, + 2DIAGNOSTIC, 35, -8.204264856252e-01, 1.715245410815e-05, 9.9404e-02, 1.4391e-03, + 2DIAGNOSTIC, 36, -8.204325509762e-01, 5.302192843636e-06, 1.0083e-01, 1.4250e-03, + 2DIAGNOSTIC, 37, -8.204409518145e-01, 1.987524466372e-06, 1.0225e-01, 1.4219e-03, + 2DIAGNOSTIC, 38, -8.204496560146e-01, 2.082386728094e-06, 1.0368e-01, 1.4279e-03, + 2DIAGNOSTIC, 39, -8.204605652985e-01, 2.158772214409e-06, 1.0600e-01, 2.3260e-03, + 2DIAGNOSTIC, 40, -8.204642946784e-01, 2.159543977680e-06, 1.0808e-01, 2.0750e-03, + 2DIAGNOSTIC, 41, -8.204643540983e-01, 2.066428187057e-06, 1.0991e-01, 1.8280e-03, + 2DIAGNOSTIC, 42, -8.204643708817e-01, 1.902857047268e-06, 1.1164e-01, 1.7350e-03, + 2DIAGNOSTIC, 43, -8.204643755329e-01, 1.694549625449e-06, 1.1330e-01, 1.6561e-03, + 2DIAGNOSTIC, 44, -8.204643769136e-01, 1.464704408358e-06, 1.1586e-01, 2.5570e-03, + 2DIAGNOSTIC, 45, -8.204643770656e-01, 1.232539462142e-06, 1.1884e-01, 2.9829e-03, + 2DIAGNOSTIC, 46, -8.204643770712e-01, 1.009108298793e-06, 1.2159e-01, 2.7542e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.776080163689e-01, 1.797693134862e+308, 1.6802e-01, 4.6423e-02, + 2DIAGNOSTIC, 2, -4.773782688268e-01, 1.797693134862e+308, 1.7067e-01, 2.6550e-03, + 2DIAGNOSTIC, 3, -4.779731782073e-01, 1.797693134862e+308, 1.7333e-01, 2.6622e-03, + 2DIAGNOSTIC, 4, -4.785486941766e-01, 1.797693134862e+308, 1.7587e-01, 2.5330e-03, + 2DIAGNOSTIC, 5, -4.798362993078e-01, 1.797693134862e+308, 1.7813e-01, 2.2590e-03, + 2DIAGNOSTIC, 6, -4.894036995038e-01, 1.797693134862e+308, 1.8056e-01, 2.4340e-03, + 2DIAGNOSTIC, 7, -4.956936259943e-01, 1.797693134862e+308, 1.8294e-01, 2.3830e-03, + 2DIAGNOSTIC, 8, -4.969496630805e-01, 1.797693134862e+308, 1.8501e-01, 2.0649e-03, + 2DIAGNOSTIC, 9, -5.003625479776e-01, 1.797693134862e+308, 1.8715e-01, 2.1400e-03, + 2DIAGNOSTIC, 10, -5.219442044249e-01, 5.072518398533e-03, 1.9010e-01, 2.9540e-03, + 2DIAGNOSTIC, 11, -5.234752681336e-01, 5.711698432154e-03, 1.9334e-01, 3.2411e-03, + 2DIAGNOSTIC, 12, -5.244562205730e-01, 5.770532535230e-03, 1.9583e-01, 2.4831e-03, + 2DIAGNOSTIC, 13, -5.251901641686e-01, 5.378488567323e-03, 1.9852e-01, 2.6979e-03, + 2DIAGNOSTIC, 14, -5.268035952691e-01, 4.649000578462e-03, 2.0096e-01, 2.4321e-03, + 2DIAGNOSTIC, 15, -5.307683707611e-01, 3.773469262061e-03, 2.0415e-01, 3.1989e-03, + 2DIAGNOSTIC, 16, -5.476470595337e-01, 3.583378384221e-03, 2.1060e-01, 6.4468e-03, + 2DIAGNOSTIC, 17, -5.489637520033e-01, 3.337099890672e-03, 2.1309e-01, 2.4920e-03, + 2DIAGNOSTIC, 18, -5.516715067760e-01, 2.947808442781e-03, 2.1557e-01, 2.4750e-03, + 2DIAGNOSTIC, 19, -5.543212910378e-01, 2.495186140213e-03, 2.1806e-01, 2.4941e-03, + 2DIAGNOSTIC, 20, -5.566700272843e-01, 2.516498864968e-03, 2.2080e-01, 2.7380e-03, + 2DIAGNOSTIC, 21, -5.581179422986e-01, 2.372472785898e-03, 2.2413e-01, 3.3319e-03, + 2DIAGNOSTIC, 22, -5.607914262346e-01, 2.112520034361e-03, 2.2744e-01, 3.3119e-03, + 2DIAGNOSTIC, 23, -5.743829896428e-01, 2.022730041364e-03, 2.3109e-01, 3.6500e-03, + 2DIAGNOSTIC, 24, -5.840742571781e-01, 2.000423926556e-03, 2.3384e-01, 2.7461e-03, + 2DIAGNOSTIC, 25, -5.853383556621e-01, 1.894242556518e-03, 2.3662e-01, 2.7781e-03, + 2DIAGNOSTIC, 26, -5.877849365779e-01, 2.025559729222e-03, 2.3902e-01, 2.3990e-03, + 2DIAGNOSTIC, 27, -5.893386664699e-01, 2.012842835007e-03, 2.4177e-01, 2.7499e-03, + 2DIAGNOSTIC, 28, -5.906589007222e-01, 1.883128091582e-03, 2.4416e-01, 2.3892e-03, + 2DIAGNOSTIC, 29, -5.968433523656e-01, 1.743692296350e-03, 2.4678e-01, 2.6200e-03, + 2DIAGNOSTIC, 30, -6.048905083170e-01, 1.633217532644e-03, 2.4974e-01, 2.9650e-03, + 2DIAGNOSTIC, 31, -6.066529764560e-01, 1.432288530108e-03, 2.5260e-01, 2.8639e-03, + 2DIAGNOSTIC, 32, -6.075131567680e-01, 1.165843391579e-03, 2.5483e-01, 2.2221e-03, + 2DIAGNOSTIC, 33, -6.088762315730e-01, 1.041895198582e-03, 2.5711e-01, 2.2860e-03, + 2DIAGNOSTIC, 34, -6.177667050828e-01, 1.109927576435e-03, 2.5998e-01, 2.8641e-03, + 2DIAGNOSTIC, 35, -6.213617679887e-01, 1.134192933597e-03, 2.6222e-01, 2.2430e-03, + 2DIAGNOSTIC, 36, -6.226954345614e-01, 1.104264394959e-03, 2.6531e-01, 3.0911e-03, + 2DIAGNOSTIC, 37, -6.238895622047e-01, 1.013768928217e-03, 2.6763e-01, 2.3160e-03, + 2DIAGNOSTIC, 38, -6.242806814385e-01, 8.546399292170e-04, 2.6984e-01, 2.2130e-03, + 2DIAGNOSTIC, 39, -6.249252377216e-01, 7.086524267100e-04, 2.7239e-01, 2.5489e-03, + 2DIAGNOSTIC, 40, -6.255490008281e-01, 6.126294320305e-04, 2.7494e-01, 2.5530e-03, + 2DIAGNOSTIC, 41, -6.257446154932e-01, 4.890579322110e-04, 2.7716e-01, 2.2161e-03, + 2DIAGNOSTIC, 42, -6.258049890700e-01, 3.380340789549e-04, 2.7940e-01, 2.2371e-03, + 2DIAGNOSTIC, 43, -6.261300925501e-01, 1.802766529683e-04, 2.8193e-01, 2.5320e-03, + 2DIAGNOSTIC, 44, -6.289354811107e-01, 1.463589803276e-04, 2.8504e-01, 3.1171e-03, + 2DIAGNOSTIC, 45, -6.293827123649e-01, 1.442057905257e-04, 2.8769e-01, 2.6450e-03, + 2DIAGNOSTIC, 46, -6.297622101632e-01, 1.471585414562e-04, 2.9051e-01, 2.8160e-03, + 2DIAGNOSTIC, 47, -6.297305223462e-01, 1.488343162082e-04, 2.9383e-01, 3.3228e-03, + 2DIAGNOSTIC, 48, -6.298969336720e-01, 1.419619966544e-04, 2.9665e-01, 2.8260e-03, + 2DIAGNOSTIC, 49, -6.308416726575e-01, 1.374003845681e-04, 2.9922e-01, 2.5640e-03, + 2DIAGNOSTIC, 50, -6.311388170927e-01, 1.286753884095e-04, 3.0241e-01, 3.1960e-03, + 2DIAGNOSTIC, 51, -6.312308504608e-01, 1.113206766893e-04, 3.0466e-01, 2.2409e-03, + 2DIAGNOSTIC, 52, -6.312174813930e-01, 8.499855692458e-05, 3.0690e-01, 2.2440e-03, + 2DIAGNOSTIC, 53, -6.313447707825e-01, 5.526533276409e-05, 3.1060e-01, 3.7029e-03, + 2DIAGNOSTIC, 54, -6.313476680332e-01, 4.689554613477e-05, 3.1282e-01, 2.2168e-03, + 2DIAGNOSTIC, 55, -6.313650865414e-01, 3.843928467818e-05, 3.1509e-01, 2.2759e-03, + 2DIAGNOSTIC, 56, -6.314493171627e-01, 3.090950792610e-05, 3.1737e-01, 2.2800e-03, + 2DIAGNOSTIC, 57, -6.314523131516e-01, 2.058973721158e-05, 3.1989e-01, 2.5170e-03, + 2DIAGNOSTIC, 58, -6.314541510156e-01, 9.967568358145e-06, 3.2216e-01, 2.2719e-03, + 2DIAGNOSTIC, 59, -6.314636033601e-01, 6.693310059949e-06, 3.2553e-01, 3.3622e-03, + 2DIAGNOSTIC, 60, -6.314699959180e-01, 5.410060480812e-06, 3.2893e-01, 3.4051e-03, + 2DIAGNOSTIC, 61, -6.314878653119e-01, 4.590387503219e-06, 3.3208e-01, 3.1469e-03, + 2DIAGNOSTIC, 62, -6.312897450132e-01, 1.719241071924e-06, 3.3465e-01, 2.5730e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.429586225625e-01, 1.797693134862e+308, 4.0194e-01, 6.7288e-02, + 2DIAGNOSTIC, 2, -4.440337990593e-01, 1.797693134862e+308, 4.1246e-01, 1.0520e-02, + 2DIAGNOSTIC, 3, -4.454658664543e-01, 1.797693134862e+308, 4.2278e-01, 1.0326e-02, + 2DIAGNOSTIC, 4, -4.472590191210e-01, 1.797693134862e+308, 4.3442e-01, 1.1639e-02, + 2DIAGNOSTIC, 5, -4.499683945352e-01, 1.797693134862e+308, 4.4543e-01, 1.1005e-02, + 2DIAGNOSTIC, 6, -4.568422129715e-01, 1.797693134862e+308, 4.5722e-01, 1.1793e-02, + 2DIAGNOSTIC, 7, -4.693974105533e-01, 1.797693134862e+308, 4.6868e-01, 1.1459e-02, + 2DIAGNOSTIC, 8, -4.714196601885e-01, 1.797693134862e+308, 4.8025e-01, 1.1570e-02, + 2DIAGNOSTIC, 9, -4.728055760144e-01, 1.797693134862e+308, 4.9537e-01, 1.5123e-02, + 2DIAGNOSTIC, 10, -4.735830068436e-01, 5.313182298974e-03, 5.0708e-01, 1.1709e-02, + 2DIAGNOSTIC, 11, -4.737754443334e-01, 4.751318047271e-03, 5.1753e-01, 1.0451e-02, + 2DIAGNOSTIC, 12, -4.745811960143e-01, 3.947531989238e-03, 5.3167e-01, 1.4141e-02, + 2DIAGNOSTIC, 13, -4.753096677614e-01, 3.017617612677e-03, 5.4334e-01, 1.1664e-02, + 2DIAGNOSTIC, 14, -4.766831131652e-01, 2.096984597242e-03, 5.5994e-01, 1.6601e-02, + 2DIAGNOSTIC, 15, -4.767123601625e-01, 1.221751771207e-03, 5.7169e-01, 1.1755e-02, + 2DIAGNOSTIC, 16, -4.778391910049e-01, 6.419956738258e-04, 5.8647e-01, 1.4780e-02, + 2DIAGNOSTIC, 17, -4.804458997452e-01, 6.163310439927e-04, 5.9981e-01, 1.3337e-02, + 2DIAGNOSTIC, 18, -4.812885895555e-01, 6.302735974218e-04, 6.1317e-01, 1.3354e-02, + 2DIAGNOSTIC, 19, -4.813151698884e-01, 6.295842145213e-04, 6.2646e-01, 1.3291e-02, + 2DIAGNOSTIC, 20, -4.814803034303e-01, 6.011067764667e-04, 6.3810e-01, 1.1644e-02, + 2DIAGNOSTIC, 21, -4.816683986179e-01, 5.303046330896e-04, 6.5271e-01, 1.4606e-02, + 2DIAGNOSTIC, 22, -4.816930058314e-01, 4.380807441070e-04, 6.6401e-01, 1.1299e-02, + 2DIAGNOSTIC, 23, -4.817047355212e-01, 3.316994585418e-04, 6.7532e-01, 1.1314e-02, + 2DIAGNOSTIC, 24, -4.816996942735e-01, 2.393177897127e-04, 6.8587e-01, 1.0555e-02, + 2DIAGNOSTIC, 25, -4.816907179989e-01, 1.329107827109e-04, 6.9706e-01, 1.1189e-02, + 2DIAGNOSTIC, 26, -4.816769649192e-01, 4.677753822208e-05, 7.0992e-01, 1.2855e-02, + 2DIAGNOSTIC, 27, -4.816795411454e-01, 2.066449699663e-05, 7.2048e-01, 1.0558e-02, + 2DIAGNOSTIC, 28, -4.816836839058e-01, 1.292454598463e-05, 7.3176e-01, 1.1284e-02, + 2DIAGNOSTIC, 29, -4.817018294163e-01, 5.499872241910e-06, 7.4226e-01, 1.0502e-02, + 2DIAGNOSTIC, 30, -4.817524784522e-01, 2.391479857124e-06, 7.5579e-01, 1.3529e-02, + 2DIAGNOSTIC, 31, -4.817648025291e-01, 3.221071446201e-06, 7.7018e-01, 1.4388e-02, + 2DIAGNOSTIC, 32, -4.817604495820e-01, 4.172275880759e-06, 7.8192e-01, 1.1743e-02, + 2DIAGNOSTIC, 33, -4.817557305786e-01, 4.906741984688e-06, 7.9486e-01, 1.2937e-02, + 2DIAGNOSTIC, 34, -4.817506922407e-01, 5.045132647680e-06, 8.0539e-01, 1.0532e-02, + 2DIAGNOSTIC, 35, -4.817463235189e-01, 4.550100921957e-06, 8.1585e-01, 1.0460e-02, + 2DIAGNOSTIC, 36, -4.817551436071e-01, 3.654157994387e-06, 8.2699e-01, 1.1136e-02, + 2DIAGNOSTIC, 37, -4.817659122975e-01, 2.770914446504e-06, 8.4056e-01, 1.3577e-02, + 2DIAGNOSTIC, 38, -4.817789073459e-01, 2.026585560477e-06, 8.5374e-01, 1.3173e-02, + 2DIAGNOSTIC, 39, -4.817702061108e-01, 1.333198006093e-06, 8.6547e-01, 1.1727e-02, + 2DIAGNOSTIC, 40, -4.817760176739e-01, 1.474304245023e-06, 8.7825e-01, 1.2780e-02, + 2DIAGNOSTIC, 41, -4.817857309658e-01, 1.862872863783e-06, 8.8822e-01, 9.9721e-03, + 2DIAGNOSTIC, 42, -4.817981027563e-01, 2.235525019788e-06, 9.0011e-01, 1.1892e-02, + 2DIAGNOSTIC, 43, -4.818027717105e-01, 2.447903272289e-06, 9.1015e-01, 1.0039e-02, + 2DIAGNOSTIC, 44, -4.818067046181e-01, 2.482150868351e-06, 9.2286e-01, 1.2708e-02, + 2DIAGNOSTIC, 45, -4.818041166198e-01, 2.256948817867e-06, 9.3423e-01, 1.1372e-02, + 2DIAGNOSTIC, 46, -4.818011510450e-01, 1.966065485099e-06, 9.4435e-01, 1.0118e-02, + 2DIAGNOSTIC, 47, -4.819826515672e-01, 4.003585806441e-06, 9.5573e-01, 1.1383e-02, + 2DIAGNOSTIC, 48, -4.820605365748e-01, 6.706751515623e-06, 9.6691e-01, 1.1179e-02, + 2DIAGNOSTIC, 49, -4.820888464025e-01, 8.958774890155e-06, 9.7835e-01, 1.1441e-02, + 2DIAGNOSTIC, 50, -4.821180466825e-01, 1.077867357890e-05, 1.0132e+00, 3.4807e-02, + 2DIAGNOSTIC, 51, -4.821180465309e-01, 1.166737103791e-05, 1.0480e+00, 3.4883e-02, + 2DIAGNOSTIC, 52, -4.821180465309e-01, 1.157444045845e-05, 1.0650e+00, 1.6997e-02, + 2DIAGNOSTIC, 53, -4.821180465309e-01, 1.046599137808e-05, 1.0765e+00, 1.1416e-02, + 2DIAGNOSTIC, 54, -4.821180465309e-01, 8.519638037205e-06, 1.0894e+00, 1.2997e-02, + 2DIAGNOSTIC, 55, -4.821180465309e-01, 5.887932498297e-06, 1.1023e+00, 1.2862e-02, + 2DIAGNOSTIC, 56, -4.821180465309e-01, 2.768688203068e-06, 1.1152e+00, 1.2851e-02, + 2DIAGNOSTIC, 57, -4.821180465309e-01, 1.432226912634e-06, 1.1267e+00, 1.1569e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.998694329819e-01, 1.797693134862e+308, 1.2953e+00, 1.6852e-01, + Elapsed time (stage 0): 1.3229e+00 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -9.445998796837e-01, 1.797693134862e+308, 4.0252e-02, 4.0252e-02, + 2DIAGNOSTIC, 2, -9.463545998202e-01, 1.797693134862e+308, 4.1764e-02, 1.5121e-03, + 2DIAGNOSTIC, 3, -9.474838858366e-01, 1.797693134862e+308, 4.3244e-02, 1.4799e-03, + 2DIAGNOSTIC, 4, -9.469018281264e-01, 1.797693134862e+308, 4.4475e-02, 1.2310e-03, + 2DIAGNOSTIC, 5, -9.467431145818e-01, 1.797693134862e+308, 4.5910e-02, 1.4350e-03, + 2DIAGNOSTIC, 6, -9.453410894745e-01, 1.797693134862e+308, 4.7048e-02, 1.1382e-03, + 2DIAGNOSTIC, 7, -9.476603346895e-01, 1.797693134862e+308, 4.8302e-02, 1.2538e-03, + 2DIAGNOSTIC, 8, -9.541276513006e-01, 1.797693134862e+308, 4.9699e-02, 1.3969e-03, + 2DIAGNOSTIC, 9, -9.562797916084e-01, 1.797693134862e+308, 5.1573e-02, 1.8742e-03, + 2DIAGNOSTIC, 10, -9.563874908375e-01, 7.590957716081e-04, 5.3170e-02, 1.5969e-03, + 2DIAGNOSTIC, 11, -9.568316177817e-01, 7.827415633509e-04, 5.4481e-02, 1.3111e-03, + 2DIAGNOSTIC, 12, -9.561619598040e-01, 7.577162352442e-04, 5.5990e-02, 1.5090e-03, + 2DIAGNOSTIC, 13, -9.552521864693e-01, 6.710405669241e-04, 5.7504e-02, 1.5140e-03, + 2DIAGNOSTIC, 14, -9.558616636643e-01, 5.364346044837e-04, 5.8832e-02, 1.3280e-03, + 2DIAGNOSTIC, 15, -9.555449642490e-01, 3.640964332063e-04, 6.0456e-02, 1.6241e-03, + 2DIAGNOSTIC, 16, -9.567797915764e-01, 1.778658714876e-04, 6.1870e-02, 1.4141e-03, + 2DIAGNOSTIC, 17, -9.576266468398e-01, 5.000709737300e-05, 6.3416e-02, 1.5459e-03, + 2DIAGNOSTIC, 18, -9.590699993359e-01, 6.226267179201e-05, 6.4942e-02, 1.5261e-03, + 2DIAGNOSTIC, 19, -9.586761730850e-01, 9.482565835940e-05, 6.6279e-02, 1.3371e-03, + 2DIAGNOSTIC, 20, -9.589408069920e-01, 1.210877035637e-04, 6.7604e-02, 1.3251e-03, + 2DIAGNOSTIC, 21, -9.618077407370e-01, 1.807729498221e-04, 6.8941e-02, 1.3371e-03, + 2DIAGNOSTIC, 22, -9.668760642285e-01, 2.766567791739e-04, 7.0486e-02, 1.5450e-03, + 2DIAGNOSTIC, 23, -9.712491067384e-01, 3.813857147057e-04, 7.2028e-02, 1.5421e-03, + 2DIAGNOSTIC, 24, -9.750944892788e-01, 4.970286216645e-04, 7.3349e-02, 1.3208e-03, + 2DIAGNOSTIC, 25, -1.002803561538e+00, 8.813808144491e-04, 7.4903e-02, 1.5540e-03, + 2DIAGNOSTIC, 26, -1.005598293631e+00, 1.189363935691e-03, 7.6874e-02, 1.9710e-03, + 2DIAGNOSTIC, 27, -1.005458318711e+00, 1.371290353591e-03, 7.8922e-02, 2.0480e-03, + 2DIAGNOSTIC, 28, -1.006929945062e+00, 1.445957384185e-03, 8.0691e-02, 1.7688e-03, + 2DIAGNOSTIC, 29, -1.012238998010e+00, 1.427940040411e-03, 8.2418e-02, 1.7269e-03, + 2DIAGNOSTIC, 30, -1.015529046486e+00, 1.305529343373e-03, 8.4434e-02, 2.0161e-03, + 2DIAGNOSTIC, 31, -1.016939604194e+00, 1.106830740247e-03, 8.5952e-02, 1.5180e-03, + 2DIAGNOSTIC, 32, -1.015545262500e+00, 8.543241552626e-04, 8.7268e-02, 1.3158e-03, + 2DIAGNOSTIC, 33, -1.019456066076e+00, 6.134054727258e-04, 8.9249e-02, 1.9810e-03, + 2DIAGNOSTIC, 34, -1.020396777215e+00, 3.620347219078e-04, 9.1823e-02, 2.5740e-03, + 2DIAGNOSTIC, 35, -1.023165727252e+00, 3.444316501582e-04, 9.3850e-02, 2.0270e-03, + 2DIAGNOSTIC, 36, -1.024679596380e+00, 3.306980234570e-04, 9.5775e-02, 1.9250e-03, + 2DIAGNOSTIC, 37, -1.058270064209e+00, 5.496672939068e-04, 9.7995e-02, 2.2202e-03, + 2DIAGNOSTIC, 38, -1.080162709787e+00, 8.738836021460e-04, 1.0028e-01, 2.2891e-03, + 2DIAGNOSTIC, 39, -1.085545254042e+00, 1.173454309270e-03, 1.0207e-01, 1.7848e-03, + 2DIAGNOSTIC, 40, -1.091802125677e+00, 1.417982328576e-03, 1.0362e-01, 1.5531e-03, + 2DIAGNOSTIC, 41, -1.102666822304e+00, 1.601412798247e-03, 1.0587e-01, 2.2502e-03, + 2DIAGNOSTIC, 42, -1.107282571331e+00, 1.638667532287e-03, 1.0761e-01, 1.7390e-03, + 2DIAGNOSTIC, 43, -1.110636609136e+00, 1.563571776424e-03, 1.0939e-01, 1.7772e-03, + 2DIAGNOSTIC, 44, -1.112946426722e+00, 1.367050380945e-03, 1.1111e-01, 1.7240e-03, + 2DIAGNOSTIC, 45, -1.115217155357e+00, 1.085522871679e-03, 1.1283e-01, 1.7149e-03, + 2DIAGNOSTIC, 46, -1.114877805959e+00, 7.162870585664e-04, 1.1434e-01, 1.5080e-03, + 2DIAGNOSTIC, 47, -1.115950501103e+00, 5.017483983861e-04, 1.1605e-01, 1.7099e-03, + 2DIAGNOSTIC, 48, -1.117437074954e+00, 3.868588870072e-04, 1.1783e-01, 1.7891e-03, + 2DIAGNOSTIC, 49, -1.117675812323e+00, 2.721701330674e-04, 1.1930e-01, 1.4689e-03, + 2DIAGNOSTIC, 50, -1.114667348688e+00, 1.536317232267e-04, 1.2150e-01, 2.1982e-03, + 2DIAGNOSTIC, 51, -1.114799473587e+00, 8.635027350523e-05, 1.2304e-01, 1.5399e-03, + 2DIAGNOSTIC, 52, -1.113869232971e+00, 3.307113147361e-05, 1.2462e-01, 1.5788e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.315061774189e-01, 1.797693134862e+308, 1.6849e-01, 4.3868e-02, + 2DIAGNOSTIC, 2, -7.316816026370e-01, 1.797693134862e+308, 1.7128e-01, 2.7909e-03, + 2DIAGNOSTIC, 3, -7.332632103348e-01, 1.797693134862e+308, 1.7409e-01, 2.8059e-03, + 2DIAGNOSTIC, 4, -7.356795313271e-01, 1.797693134862e+308, 1.7684e-01, 2.7549e-03, + 2DIAGNOSTIC, 5, -7.382699284896e-01, 1.797693134862e+308, 1.7925e-01, 2.4080e-03, + 2DIAGNOSTIC, 6, -7.393506367397e-01, 1.797693134862e+308, 1.8200e-01, 2.7502e-03, + 2DIAGNOSTIC, 7, -7.403431392064e-01, 1.797693134862e+308, 1.8600e-01, 3.9971e-03, + 2DIAGNOSTIC, 8, -7.403578276680e-01, 1.797693134862e+308, 1.8849e-01, 2.4948e-03, + 2DIAGNOSTIC, 9, -7.404039638150e-01, 1.797693134862e+308, 1.9086e-01, 2.3661e-03, + 2DIAGNOSTIC, 10, -7.404050977745e-01, 9.229800591343e-04, 1.9398e-01, 3.1199e-03, + 2DIAGNOSTIC, 11, -7.404468931200e-01, 6.847304064938e-04, 1.9672e-01, 2.7480e-03, + 2DIAGNOSTIC, 12, -7.404401868622e-01, 4.307930300990e-04, 1.9943e-01, 2.7049e-03, + 2DIAGNOSTIC, 13, -7.405295449328e-01, 2.262104188443e-04, 2.0201e-01, 2.5840e-03, + 2DIAGNOSTIC, 14, -7.408125795856e-01, 1.035574335763e-04, 2.0460e-01, 2.5909e-03, + 2DIAGNOSTIC, 15, -7.411470345489e-01, 6.245731690410e-05, 2.0740e-01, 2.7938e-03, + 2DIAGNOSTIC, 16, -7.418315539989e-01, 6.264593106683e-05, 2.1101e-01, 3.6089e-03, + 2DIAGNOSTIC, 17, -7.419483869665e-01, 8.208239683172e-05, 2.1385e-01, 2.8419e-03, + 2DIAGNOSTIC, 18, -7.418549353499e-01, 9.041388736002e-05, 2.1642e-01, 2.5671e-03, + 2DIAGNOSTIC, 19, -7.419125248230e-01, 9.193854995421e-05, 2.1898e-01, 2.5609e-03, + 2DIAGNOSTIC, 20, -7.420193134013e-01, 8.680687765822e-05, 2.2124e-01, 2.2669e-03, + 2DIAGNOSTIC, 21, -7.420809193191e-01, 7.591586282094e-05, 2.2379e-01, 2.5430e-03, + 2DIAGNOSTIC, 22, -7.421070967444e-01, 5.945839866500e-05, 2.2626e-01, 2.4741e-03, + 2DIAGNOSTIC, 23, -7.421005266645e-01, 4.055629195714e-05, 2.2890e-01, 2.6400e-03, + 2DIAGNOSTIC, 24, -7.421974689553e-01, 2.566325627569e-05, 2.3151e-01, 2.6078e-03, + 2DIAGNOSTIC, 25, -7.422178597059e-01, 1.475844643470e-05, 2.3412e-01, 2.6090e-03, + 2DIAGNOSTIC, 26, -7.422093491407e-01, 1.334669398879e-05, 2.3644e-01, 2.3232e-03, + 2DIAGNOSTIC, 27, -7.421627307467e-01, 1.199027293108e-05, 2.3876e-01, 2.3210e-03, + 2DIAGNOSTIC, 28, -7.422854124932e-01, 1.013780249632e-05, 2.4129e-01, 2.5280e-03, + 2DIAGNOSTIC, 29, -7.423176751782e-01, 8.650325158829e-06, 2.4379e-01, 2.4960e-03, + 2DIAGNOSTIC, 30, -7.421555218307e-01, 5.808762387212e-06, 2.4655e-01, 2.7659e-03, + 2DIAGNOSTIC, 31, -7.421704746920e-01, 3.749293784001e-06, 2.4938e-01, 2.8250e-03, + 2DIAGNOSTIC, 32, -7.421497586140e-01, 1.628920172865e-06, 2.5169e-01, 2.3110e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.539771186782e-01, 1.797693134862e+308, 3.1353e-01, 6.1847e-02, + 2DIAGNOSTIC, 2, -5.543539905059e-01, 1.797693134862e+308, 3.2488e-01, 1.1348e-02, + 2DIAGNOSTIC, 3, -5.549271848835e-01, 1.797693134862e+308, 3.3681e-01, 1.1929e-02, + 2DIAGNOSTIC, 4, -5.556417172424e-01, 1.797693134862e+308, 3.4899e-01, 1.2183e-02, + 2DIAGNOSTIC, 5, -5.567086831548e-01, 1.797693134862e+308, 3.6073e-01, 1.1733e-02, + 2DIAGNOSTIC, 6, -5.579049378957e-01, 1.797693134862e+308, 3.7194e-01, 1.1215e-02, + 2DIAGNOSTIC, 7, -5.591574329515e-01, 1.797693134862e+308, 3.8312e-01, 1.1176e-02, + 2DIAGNOSTIC, 8, -5.602923606005e-01, 1.797693134862e+308, 3.9631e-01, 1.3196e-02, + 2DIAGNOSTIC, 9, -5.607204738355e-01, 1.797693134862e+308, 4.1298e-01, 1.6665e-02, + 2DIAGNOSTIC, 10, -5.612289921502e-01, 9.422169066525e-04, 4.2482e-01, 1.1840e-02, + 2DIAGNOSTIC, 11, -5.613851596689e-01, 8.357664577496e-04, 4.3978e-01, 1.4961e-02, + 2DIAGNOSTIC, 12, -5.615097439658e-01, 6.932930535623e-04, 4.5153e-01, 1.1749e-02, + 2DIAGNOSTIC, 13, -5.615749138274e-01, 5.352466018885e-04, 4.6388e-01, 1.2353e-02, + 2DIAGNOSTIC, 14, -5.616701954589e-01, 3.806945341954e-04, 4.7794e-01, 1.4056e-02, + 2DIAGNOSTIC, 15, -5.617412210283e-01, 2.505140777377e-04, 4.9230e-01, 1.4363e-02, + 2DIAGNOSTIC, 16, -5.617277247053e-01, 1.508589442246e-04, 5.0617e-01, 1.3866e-02, + 2DIAGNOSTIC, 17, -5.617491934766e-01, 8.679337490240e-05, 5.1972e-01, 1.3556e-02, + 2DIAGNOSTIC, 18, -5.617635650131e-01, 5.433278749729e-05, 5.3318e-01, 1.3457e-02, + 2DIAGNOSTIC, 19, -5.617616769138e-01, 3.147803384761e-05, 5.4655e-01, 1.3375e-02, + 2DIAGNOSTIC, 20, -5.617645038635e-01, 2.106285082029e-05, 5.6285e-01, 1.6295e-02, + 2DIAGNOSTIC, 21, -5.617613221967e-01, 1.350003207871e-05, 5.7534e-01, 1.2486e-02, + 2DIAGNOSTIC, 22, -5.617547045906e-01, 8.235172955257e-06, 5.8727e-01, 1.1939e-02, + 2DIAGNOSTIC, 23, -5.617483181579e-01, 4.043578965253e-06, 5.9922e-01, 1.1941e-02, + 2DIAGNOSTIC, 24, -5.617602884692e-01, 2.182998951418e-06, 6.1260e-01, 1.3381e-02, + 2DIAGNOSTIC, 25, -5.617575684604e-01, 1.784828349907e-06, 6.2590e-01, 1.3308e-02, + 2DIAGNOSTIC, 26, -5.617558272017e-01, 1.066558290561e-06, 6.4073e-01, 1.4823e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.580159345006e-01, 1.797693134862e+308, 8.2411e-01, 1.8338e-01, + Elapsed time (stage 1): 8.4570e-01 + + +Total elapsed time: 2.1696e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:23:35 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 35 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 52 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 75.19% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 75.19% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[10573 8714 9914 11666 20841 3437 12116 2752 8334 5999 11113 13356 + 15899 4777 1452 7456 1540 254 419 877 994 271 407 383 + 0 188 162 0 0 185 0 181 0 0 209] +[46374 35663 24529 32194 23136 17895 10096 18923 7824 12496 6178 9042 + 12583 9856 11601 8367 9700 8285 8156 1858 5028 3123 5298 944 + 1670 2339 1669 1244 1575 1108 1494 1598 710 999 783] +[16221 3670 17707 1449 454 265 165 6848 1420 0 173 2415 + 12992 12024 1781 9525 0 2065 447 0 0 0 7630 426 + 3767 8396 11917 9558 13650 171 425 0 0 2123 0] +[ 1738 30325 5506 1629 2846 2917 5326 13722 1063 1944 2195 17932 + 868 866 12489 40516 3470 17710 5996 5606 876 1975 21164 7890 + 558 34221 782 759 843 2704 1445 1204 16367 6584 1441] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:33:08 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:33:13 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:36:56 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:36:56 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:36:56 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:37:06 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:37:09 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC010 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:38:16 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983051776885986,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:38:41 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:41:47 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:41:48 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:43:14 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:43:14 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55df99f06d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [76.2585, 125.918, -122.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55df99d7d730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f20ea92b010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55df99f0a020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 68.202, -106.063] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55df99f100c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f20e722e010 + Container manages memory: true + Size: 7207200 + Capacity: 7207200 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55df99f20840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [76.2585, 125.918, -122.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55df99f0c890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f20e255a010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x55df99f243e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 68.202, -106.063] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55df99f13130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f20dee5d010 + Container manages memory: true + Size: 7207200 + Capacity: 7207200 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.694845587300e-01, 1.797693134862e+308, 2.2790e-01, 2.2790e-01, + 2DIAGNOSTIC, 2, -4.712776770748e-01, 1.797693134862e+308, 2.2941e-01, 1.5080e-03, + 2DIAGNOSTIC, 3, -4.738000663495e-01, 1.797693134862e+308, 2.3075e-01, 1.3430e-03, + 2DIAGNOSTIC, 4, -4.776160090632e-01, 1.797693134862e+308, 2.3212e-01, 1.3659e-03, + 2DIAGNOSTIC, 5, -4.822564608066e-01, 1.797693134862e+308, 2.3348e-01, 1.3649e-03, + 2DIAGNOSTIC, 6, -4.907211436123e-01, 1.797693134862e+308, 2.3493e-01, 1.4520e-03, + 2DIAGNOSTIC, 7, -5.180831212006e-01, 1.797693134862e+308, 2.3633e-01, 1.3990e-03, + 2DIAGNOSTIC, 8, -5.790039385781e-01, 1.797693134862e+308, 2.3805e-01, 1.7231e-03, + 2DIAGNOSTIC, 9, -5.916496469083e-01, 1.797693134862e+308, 2.4116e-01, 3.1099e-03, + 2DIAGNOSTIC, 10, -5.937851473593e-01, 1.787055737640e-02, 2.4310e-01, 1.9319e-03, + 2DIAGNOSTIC, 11, -5.942368431743e-01, 1.769972521081e-02, 2.4478e-01, 1.6811e-03, + 2DIAGNOSTIC, 12, -5.990937095523e-01, 1.625771993183e-02, 2.4667e-01, 1.8950e-03, + 2DIAGNOSTIC, 13, -5.983751195118e-01, 1.363843189915e-02, 2.4841e-01, 1.7362e-03, + 2DIAGNOSTIC, 14, -6.026641772288e-01, 1.050864807336e-02, 2.5030e-01, 1.8950e-03, + 2DIAGNOSTIC, 15, -6.078630075244e-01, 7.262041114980e-03, 2.5216e-01, 1.8530e-03, + 2DIAGNOSTIC, 16, -6.089306872218e-01, 4.114577786475e-03, 2.5404e-01, 1.8821e-03, + 2DIAGNOSTIC, 17, -6.078961621811e-01, 1.752457499201e-03, 2.5567e-01, 1.6320e-03, + 2DIAGNOSTIC, 18, -6.074927755538e-01, 1.235462689277e-03, 2.5753e-01, 1.8589e-03, + 2DIAGNOSTIC, 19, -6.078640999357e-01, 1.012357209007e-03, 2.5912e-01, 1.5912e-03, + 2DIAGNOSTIC, 20, -6.082004526134e-01, 7.800740655310e-04, 2.6095e-01, 1.8258e-03, + 2DIAGNOSTIC, 21, -6.122681972365e-01, 6.052118573823e-04, 2.6324e-01, 2.2938e-03, + 2DIAGNOSTIC, 22, -6.140282957176e-01, 5.443803417398e-04, 2.6509e-01, 1.8542e-03, + 2DIAGNOSTIC, 23, -6.153477603271e-01, 4.511042181554e-04, 2.6696e-01, 1.8611e-03, + 2DIAGNOSTIC, 24, -6.160135712054e-01, 4.251327606300e-04, 2.6859e-01, 1.6320e-03, + 2DIAGNOSTIC, 25, -6.164598939374e-01, 4.732877637222e-04, 2.7043e-01, 1.8420e-03, + 2DIAGNOSTIC, 26, -6.181101480867e-01, 5.245038422716e-04, 2.7225e-01, 1.8229e-03, + 2DIAGNOSTIC, 27, -6.194061970654e-01, 5.261618112271e-04, 2.7412e-01, 1.8661e-03, + 2DIAGNOSTIC, 28, -6.190260809055e-01, 4.648464430650e-04, 2.7620e-01, 2.0771e-03, + 2DIAGNOSTIC, 29, -6.202652679709e-01, 3.934654639504e-04, 2.7799e-01, 1.7979e-03, + 2DIAGNOSTIC, 30, -6.199835359466e-01, 2.892976919034e-04, 2.7964e-01, 1.6491e-03, + 2DIAGNOSTIC, 31, -6.197308735254e-01, 2.247498961970e-04, 2.8126e-01, 1.6160e-03, + 2DIAGNOSTIC, 32, -6.190674416257e-01, 1.597341319890e-04, 2.8312e-01, 1.8609e-03, + 2DIAGNOSTIC, 33, -6.198719757679e-01, 1.156067551447e-04, 2.8473e-01, 1.6050e-03, + 2DIAGNOSTIC, 34, -6.195181264202e-01, 6.748738167789e-05, 2.8654e-01, 1.8101e-03, + 2DIAGNOSTIC, 35, -6.206059899836e-01, 3.689791931057e-05, 2.8837e-01, 1.8351e-03, + 2DIAGNOSTIC, 36, -6.215514117700e-01, 3.920586567375e-05, 2.9018e-01, 1.8079e-03, + 2DIAGNOSTIC, 37, -6.222939776084e-01, 6.457884221727e-05, 2.9613e-01, 5.9481e-03, + 2DIAGNOSTIC, 38, -6.222939767165e-01, 7.707261601404e-05, 2.9773e-01, 1.6060e-03, + 2DIAGNOSTIC, 39, -6.222939908059e-01, 9.720144693572e-05, 2.9935e-01, 1.6139e-03, + 2DIAGNOSTIC, 40, -6.222940146259e-01, 1.037429768649e-04, 3.0094e-01, 1.5941e-03, + 2DIAGNOSTIC, 41, -6.222940548905e-01, 9.717513485885e-05, 3.0254e-01, 1.6010e-03, + 2DIAGNOSTIC, 42, -6.222941229357e-01, 7.385628562443e-05, 3.0410e-01, 1.5600e-03, + 2DIAGNOSTIC, 43, -6.222942378805e-01, 5.409819242644e-05, 3.0577e-01, 1.6692e-03, + 2DIAGNOSTIC, 44, -6.222944319117e-01, 2.625189924046e-05, 3.0734e-01, 1.5681e-03, + 2DIAGNOSTIC, 45, -6.222947590430e-01, 8.666699305881e-06, 3.0894e-01, 1.6012e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.779931768375e-01, 1.797693134862e+308, 5.2857e-01, 2.1963e-01, + 2DIAGNOSTIC, 2, -4.770870550962e-01, 1.797693134862e+308, 5.3080e-01, 2.2311e-03, + 2DIAGNOSTIC, 3, -4.776381191293e-01, 1.797693134862e+308, 5.3299e-01, 2.1839e-03, + 2DIAGNOSTIC, 4, -4.776149207282e-01, 1.797693134862e+308, 5.3505e-01, 2.0590e-03, + 2DIAGNOSTIC, 5, -4.787936292504e-01, 1.797693134862e+308, 5.3745e-01, 2.4040e-03, + 2DIAGNOSTIC, 6, -4.812795311634e-01, 1.797693134862e+308, 5.4038e-01, 2.9280e-03, + 2DIAGNOSTIC, 7, -4.812729519110e-01, 1.797693134862e+308, 5.4284e-01, 2.4650e-03, + 2DIAGNOSTIC, 8, -4.812994407929e-01, 1.797693134862e+308, 5.4500e-01, 2.1520e-03, + 2DIAGNOSTIC, 9, -4.813090400132e-01, 1.797693134862e+308, 5.4742e-01, 2.4281e-03, + 2DIAGNOSTIC, 10, -4.813128441809e-01, 6.964100809386e-04, 5.4980e-01, 2.3739e-03, + 2DIAGNOSTIC, 11, -4.814180947821e-01, 6.116925638999e-04, 5.5204e-01, 2.2378e-03, + 2DIAGNOSTIC, 12, -4.815398582400e-01, 4.474030799171e-04, 5.5459e-01, 2.5511e-03, + 2DIAGNOSTIC, 13, -4.816609447224e-01, 3.013370208973e-04, 5.5694e-01, 2.3551e-03, + 2DIAGNOSTIC, 14, -4.810943833160e-01, 1.239490997416e-04, 5.5973e-01, 2.7850e-03, + 2DIAGNOSTIC, 15, -4.815421047194e-01, 2.128629111874e-05, 5.6279e-01, 3.0620e-03, + 2DIAGNOSTIC, 16, -4.814265782872e-01, 1.669173875878e-05, 5.7057e-01, 7.7860e-03, + 2DIAGNOSTIC, 17, -4.814265763720e-01, 1.091676426259e-05, 5.7277e-01, 2.1980e-03, + 2DIAGNOSTIC, 18, -4.814265872848e-01, 6.051676229156e-06, 5.7493e-01, 2.1601e-03, + 2DIAGNOSTIC, 19, -4.814266057307e-01, 1.872625627064e-06, 5.7711e-01, 2.1811e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.668909237123e-01, 1.797693134862e+308, 8.1869e-01, 2.4158e-01, + 2DIAGNOSTIC, 2, -3.674061871973e-01, 1.797693134862e+308, 8.3197e-01, 1.3274e-02, + 2DIAGNOSTIC, 3, -3.679864611707e-01, 1.797693134862e+308, 8.4729e-01, 1.5326e-02, + 2DIAGNOSTIC, 4, -3.683596219859e-01, 1.797693134862e+308, 8.5965e-01, 1.2353e-02, + 2DIAGNOSTIC, 5, -3.686518359642e-01, 1.797693134862e+308, 8.7179e-01, 1.2141e-02, + 2DIAGNOSTIC, 6, -3.692955387829e-01, 1.797693134862e+308, 8.8396e-01, 1.2172e-02, + 2DIAGNOSTIC, 7, -3.719926982376e-01, 1.797693134862e+308, 8.9789e-01, 1.3930e-02, + 2DIAGNOSTIC, 8, -3.722806731128e-01, 1.797693134862e+308, 9.0984e-01, 1.1945e-02, + 2DIAGNOSTIC, 9, -3.738942363975e-01, 1.797693134862e+308, 9.2209e-01, 1.2250e-02, + 2DIAGNOSTIC, 10, -3.874233025823e-01, 2.376599274391e-03, 9.3442e-01, 1.2330e-02, + 2DIAGNOSTIC, 11, -4.619349576701e-01, 8.001489011318e-03, 9.5457e-01, 2.0154e-02, + 2DIAGNOSTIC, 12, -4.949969966325e-01, 1.363930723600e-02, 9.8019e-01, 2.5622e-02, + 2DIAGNOSTIC, 13, -4.950716834712e-01, 1.703500238292e-02, 9.9275e-01, 1.2562e-02, + 2DIAGNOSTIC, 14, -4.955205667644e-01, 1.843534388758e-02, 1.0051e+00, 1.2297e-02, + 2DIAGNOSTIC, 15, -4.960879222156e-01, 1.799183788658e-02, 1.0171e+00, 1.2024e-02, + 2DIAGNOSTIC, 16, -4.966768985646e-01, 1.597365815387e-02, 1.0291e+00, 1.1977e-02, + 2DIAGNOSTIC, 17, -4.978130884644e-01, 1.290818752513e-02, 1.0414e+00, 1.2343e-02, + 2DIAGNOSTIC, 18, -5.000232277075e-01, 9.195733300545e-03, 1.0545e+00, 1.3059e-02, + 2DIAGNOSTIC, 19, -5.043451763617e-01, 5.333512154030e-03, 1.0677e+00, 1.3230e-02, + 2DIAGNOSTIC, 20, -5.091042117153e-01, 1.968973590602e-03, 1.0857e+00, 1.8024e-02, + 2DIAGNOSTIC, 21, -5.145060271207e-01, 1.239724835107e-03, 1.0984e+00, 1.2676e-02, + 2DIAGNOSTIC, 22, -5.255130715307e-01, 1.761836548898e-03, 1.1124e+00, 1.4020e-02, + 2DIAGNOSTIC, 23, -5.504139177016e-01, 2.747766001688e-03, 1.1267e+00, 1.4312e-02, + 2DIAGNOSTIC, 24, -5.569172288353e-01, 3.543746065848e-03, 1.1390e+00, 1.2290e-02, + 2DIAGNOSTIC, 25, -5.586961202957e-01, 3.995497876759e-03, 1.1534e+00, 1.4378e-02, + 2DIAGNOSTIC, 26, -5.618960830982e-01, 4.129989887771e-03, 1.1673e+00, 1.3883e-02, + 2DIAGNOSTIC, 27, -5.636448923856e-01, 3.927290375138e-03, 1.1822e+00, 1.4969e-02, + 2DIAGNOSTIC, 28, -5.660961889925e-01, 3.465708210573e-03, 1.2028e+00, 2.0604e-02, + 2DIAGNOSTIC, 29, -5.671173042704e-01, 2.826824203483e-03, 1.2144e+00, 1.1553e-02, + 2DIAGNOSTIC, 30, -5.701087013504e-01, 2.135270234778e-03, 1.2278e+00, 1.3419e-02, + 2DIAGNOSTIC, 31, -5.707534297870e-01, 1.412510852954e-03, 1.2402e+00, 1.2366e-02, + 2DIAGNOSTIC, 32, -5.714543189741e-01, 8.159206971613e-04, 1.2518e+00, 1.1640e-02, + 2DIAGNOSTIC, 33, -5.742560171171e-01, 6.776668276553e-04, 1.2640e+00, 1.2226e-02, + 2DIAGNOSTIC, 34, -5.764548041837e-01, 6.336294086595e-04, 1.2837e+00, 1.9705e-02, + 2DIAGNOSTIC, 35, -5.780744076221e-01, 5.875618099649e-04, 1.2963e+00, 1.2565e-02, + 2DIAGNOSTIC, 36, -5.788703895347e-01, 5.532974662960e-04, 1.3121e+00, 1.5755e-02, + 2DIAGNOSTIC, 37, -5.794526682267e-01, 5.052102808000e-04, 1.3260e+00, 1.3885e-02, + 2DIAGNOSTIC, 38, -5.802844706190e-01, 4.615479829965e-04, 1.3398e+00, 1.3838e-02, + 2DIAGNOSTIC, 39, -5.826809643577e-01, 4.250159318177e-04, 1.3542e+00, 1.4388e-02, + 2DIAGNOSTIC, 40, -5.833558082780e-01, 4.017549742949e-04, 1.3673e+00, 1.3072e-02, + 2DIAGNOSTIC, 41, -5.836848727311e-01, 3.558793482475e-04, 1.3835e+00, 1.6220e-02, + 2DIAGNOSTIC, 42, -5.837570289769e-01, 2.890878581831e-04, 1.3963e+00, 1.2797e-02, + 2DIAGNOSTIC, 43, -5.837944577997e-01, 2.350275938906e-04, 1.4146e+00, 1.8324e-02, + 2DIAGNOSTIC, 44, -5.837882328021e-01, 1.885500603630e-04, 1.4277e+00, 1.3151e-02, + 2DIAGNOSTIC, 45, -5.837835712832e-01, 1.463225680619e-04, 1.4395e+00, 1.1757e-02, + 2DIAGNOSTIC, 46, -5.837538553180e-01, 1.018907195234e-04, 1.4550e+00, 1.5495e-02, + 2DIAGNOSTIC, 47, -5.837626214384e-01, 5.711353846921e-05, 1.4688e+00, 1.3775e-02, + 2DIAGNOSTIC, 48, -5.837542364701e-01, 1.791732057623e-05, 1.4807e+00, 1.1969e-02, + 2DIAGNOSTIC, 49, -5.837505922392e-01, 5.687787873566e-06, 1.4927e+00, 1.1923e-02, + 2DIAGNOSTIC, 50, -5.837716221372e-01, 1.115867963572e-06, 1.5069e+00, 1.4215e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.956450813227e-01, 1.797693134862e+308, 1.9195e+00, 4.1260e-01, + 2DIAGNOSTIC, 2, -4.959177800561e-01, 1.797693134862e+308, 2.0069e+00, 8.7464e-02, + 2DIAGNOSTIC, 3, -4.961408773088e-01, 1.797693134862e+308, 2.0917e+00, 8.4808e-02, + 2DIAGNOSTIC, 4, -4.963834437295e-01, 1.797693134862e+308, 2.1740e+00, 8.2263e-02, + 2DIAGNOSTIC, 5, -4.969728447690e-01, 1.797693134862e+308, 2.2599e+00, 8.5869e-02, + 2DIAGNOSTIC, 6, -4.976016012351e-01, 1.797693134862e+308, 2.3552e+00, 9.5348e-02, + 2DIAGNOSTIC, 7, -4.979197987350e-01, 1.797693134862e+308, 2.4782e+00, 1.2293e-01, + 2DIAGNOSTIC, 8, -4.981440814401e-01, 1.797693134862e+308, 2.5588e+00, 8.0601e-02, + 2DIAGNOSTIC, 9, -4.983828514239e-01, 1.797693134862e+308, 2.6530e+00, 9.4264e-02, + 2DIAGNOSTIC, 10, -4.985389876142e-01, 4.190651684637e-04, 2.7848e+00, 1.3175e-01, + 2DIAGNOSTIC, 11, -4.985830914224e-01, 3.542971335523e-04, 2.8656e+00, 8.0810e-02, + 2DIAGNOSTIC, 12, -4.987129524920e-01, 2.881089749045e-04, 2.9499e+00, 8.4350e-02, + 2DIAGNOSTIC, 13, -4.987524975870e-01, 2.180705444403e-04, 3.0333e+00, 8.3395e-02, + 2DIAGNOSTIC, 14, -4.988363928100e-01, 1.514523642970e-04, 3.1295e+00, 9.6205e-02, + 2DIAGNOSTIC, 15, -4.989311940897e-01, 1.056323534799e-04, 3.2529e+00, 1.2334e-01, + 2DIAGNOSTIC, 16, -4.989632912701e-01, 7.945232372675e-05, 3.3802e+00, 1.2732e-01, + 2DIAGNOSTIC, 17, -4.989745204103e-01, 6.022710898670e-05, 3.5023e+00, 1.2208e-01, + 2DIAGNOSTIC, 18, -4.989734858760e-01, 4.470198513859e-05, 3.5964e+00, 9.4154e-02, + 2DIAGNOSTIC, 19, -4.989708493780e-01, 3.383785447410e-05, 3.6788e+00, 8.2346e-02, + 2DIAGNOSTIC, 20, -4.989687024591e-01, 2.544396743059e-05, 3.7724e+00, 9.3600e-02, + 2DIAGNOSTIC, 21, -4.989700823268e-01, 1.678897778519e-05, 3.8547e+00, 8.2376e-02, + 2DIAGNOSTIC, 22, -4.989706437660e-01, 1.090519329860e-05, 3.9369e+00, 8.2111e-02, + 2DIAGNOSTIC, 23, -4.989743262683e-01, 5.701905688014e-06, 4.0191e+00, 8.2223e-02, + 2DIAGNOSTIC, 24, -4.989838126952e-01, 2.696532838610e-06, 4.1437e+00, 1.2462e-01, + 2DIAGNOSTIC, 25, -4.989802722893e-01, 1.863536284605e-06, 4.2435e+00, 9.9843e-02, + 2DIAGNOSTIC, 26, -4.989797121485e-01, 1.728597160633e-06, 4.3437e+00, 1.0021e-01, + 2DIAGNOSTIC, 27, -4.989787455816e-01, 1.774386095908e-06, 4.4257e+00, 8.1986e-02, + 2DIAGNOSTIC, 28, -4.989799986832e-01, 1.763960062302e-06, 4.5078e+00, 8.2060e-02, + 2DIAGNOSTIC, 29, -4.989780890343e-01, 1.603147236455e-06, 4.6048e+00, 9.7030e-02, + 2DIAGNOSTIC, 30, -4.989802215778e-01, 1.407106384833e-06, 4.6877e+00, 8.2844e-02, + 2DIAGNOSTIC, 31, -4.989854798814e-01, 1.315833218135e-06, 4.7733e+00, 8.5675e-02, + 2DIAGNOSTIC, 32, -4.989981267622e-01, 1.434911503957e-06, 4.8566e+00, 8.3224e-02, + 2DIAGNOSTIC, 33, -4.990145978667e-01, 1.842982991072e-06, 4.9382e+00, 8.1609e-02, + 2DIAGNOSTIC, 34, -4.990348616711e-01, 2.640360340190e-06, 5.0330e+00, 9.4876e-02, + 2DIAGNOSTIC, 35, -4.990676410038e-01, 3.703325634614e-06, 5.1162e+00, 8.3170e-02, + 2DIAGNOSTIC, 36, -4.990893349866e-01, 4.767407390777e-06, 5.1971e+00, 8.0899e-02, + 2DIAGNOSTIC, 37, -4.991390782512e-01, 6.152675461106e-06, 5.2919e+00, 9.4744e-02, + 2DIAGNOSTIC, 38, -4.991642015169e-01, 7.343734874297e-06, 5.4003e+00, 1.0840e-01, + 2DIAGNOSTIC, 39, -4.991700217978e-01, 7.909556719188e-06, 5.5087e+00, 1.0846e-01, + 2DIAGNOSTIC, 40, -4.991719684079e-01, 7.835983463971e-06, 5.6190e+00, 1.1029e-01, + 2DIAGNOSTIC, 41, -4.991731864835e-01, 7.183079541170e-06, 5.7172e+00, 9.8174e-02, + 2DIAGNOSTIC, 42, -4.991817069721e-01, 6.228430104310e-06, 5.8126e+00, 9.5394e-02, + 2DIAGNOSTIC, 43, -4.991768181188e-01, 4.940410434605e-06, 5.9034e+00, 9.0775e-02, + 2DIAGNOSTIC, 44, -4.991769385183e-01, 3.576168604000e-06, 5.9803e+00, 7.6987e-02, + 2DIAGNOSTIC, 45, -4.991772136706e-01, 2.423665924029e-06, 6.0625e+00, 8.2162e-02, + 2DIAGNOSTIC, 46, -4.991788058369e-01, 1.431126107943e-06, 6.1436e+00, 8.1051e-02, + 2DIAGNOSTIC, 47, -4.991838496033e-01, 1.065004057849e-06, 6.2330e+00, 8.9422e-02, + 2DIAGNOSTIC, 48, -4.991923381962e-01, 1.073862935169e-06, 6.3256e+00, 9.2581e-02, + 2DIAGNOSTIC, 49, -4.991903527621e-01, 1.087143543566e-06, 6.4200e+00, 9.4398e-02, + 2DIAGNOSTIC, 50, -4.991847859381e-01, 1.019201630394e-06, 6.5146e+00, 9.4669e-02, + Elapsed time (stage 0): 6.6632e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.072463095406e-01, 1.797693134862e+308, 1.9299e-01, 1.9299e-01, + 2DIAGNOSTIC, 2, -8.083736925431e-01, 1.797693134862e+308, 1.9412e-01, 1.1280e-03, + 2DIAGNOSTIC, 3, -8.094454912965e-01, 1.797693134862e+308, 1.9529e-01, 1.1671e-03, + 2DIAGNOSTIC, 4, -8.120265635136e-01, 1.797693134862e+308, 1.9651e-01, 1.2219e-03, + 2DIAGNOSTIC, 5, -8.154371780423e-01, 1.797693134862e+308, 1.9794e-01, 1.4310e-03, + 2DIAGNOSTIC, 6, -8.173650851255e-01, 1.797693134862e+308, 1.9914e-01, 1.2000e-03, + 2DIAGNOSTIC, 7, -8.202235159535e-01, 1.797693134862e+308, 2.0039e-01, 1.2548e-03, + 2DIAGNOSTIC, 8, -8.328408861365e-01, 1.797693134862e+308, 2.0159e-01, 1.1990e-03, + 2DIAGNOSTIC, 9, -8.464572674166e-01, 1.797693134862e+308, 2.0302e-01, 1.4319e-03, + 2DIAGNOSTIC, 10, -8.545579828544e-01, 3.498887224346e-03, 2.0449e-01, 1.4679e-03, + 2DIAGNOSTIC, 11, -8.611144461853e-01, 3.910868164780e-03, 2.0621e-01, 1.7221e-03, + 2DIAGNOSTIC, 12, -8.691506478830e-01, 4.163259307575e-03, 2.0851e-01, 2.2950e-03, + 2DIAGNOSTIC, 13, -8.763277470150e-01, 4.206894269115e-03, 2.0994e-01, 1.4329e-03, + 2DIAGNOSTIC, 14, -8.793845262227e-01, 3.991173066596e-03, 2.1128e-01, 1.3361e-03, + 2DIAGNOSTIC, 15, -8.864188466356e-01, 3.678727389029e-03, 2.1286e-01, 1.5831e-03, + 2DIAGNOSTIC, 16, -8.931843245344e-01, 3.254553615224e-03, 2.1466e-01, 1.7951e-03, + 2DIAGNOSTIC, 17, -8.946100614614e-01, 2.662912352675e-03, 2.1802e-01, 3.3679e-03, + 2DIAGNOSTIC, 18, -8.946123595781e-01, 2.126664931731e-03, 2.1939e-01, 1.3661e-03, + 2DIAGNOSTIC, 19, -8.947404816130e-01, 1.694916435587e-03, 2.2115e-01, 1.7588e-03, + 2DIAGNOSTIC, 20, -8.941762933980e-01, 1.275202024303e-03, 2.2292e-01, 1.7741e-03, + 2DIAGNOSTIC, 21, -8.944383356635e-01, 8.832651401919e-04, 2.2469e-01, 1.7700e-03, + 2DIAGNOSTIC, 22, -8.939968184360e-01, 5.590939607001e-04, 2.2638e-01, 1.6861e-03, + 2DIAGNOSTIC, 23, -8.943262562410e-01, 3.217716572563e-04, 2.2818e-01, 1.8029e-03, + 2DIAGNOSTIC, 24, -8.945446013854e-01, 1.186422932535e-04, 2.2979e-01, 1.6050e-03, + 2DIAGNOSTIC, 25, -8.941039305589e-01, 6.041764098477e-06, 2.3139e-01, 1.6000e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.871660209473e-01, 1.797693134862e+308, 4.2482e-01, 1.9343e-01, + 2DIAGNOSTIC, 2, -7.881988365923e-01, 1.797693134862e+308, 4.2718e-01, 2.3551e-03, + 2DIAGNOSTIC, 3, -7.903384571126e-01, 1.797693134862e+308, 4.2937e-01, 2.1901e-03, + 2DIAGNOSTIC, 4, -7.931395404291e-01, 1.797693134862e+308, 4.3154e-01, 2.1701e-03, + 2DIAGNOSTIC, 5, -7.961105775481e-01, 1.797693134862e+308, 4.3371e-01, 2.1720e-03, + 2DIAGNOSTIC, 6, -8.000697067745e-01, 1.797693134862e+308, 4.3618e-01, 2.4691e-03, + 2DIAGNOSTIC, 7, -8.053003615229e-01, 1.797693134862e+308, 4.3885e-01, 2.6710e-03, + 2DIAGNOSTIC, 8, -8.073391358740e-01, 1.797693134862e+308, 4.4087e-01, 2.0230e-03, + 2DIAGNOSTIC, 9, -8.087501558466e-01, 1.797693134862e+308, 4.4314e-01, 2.2669e-03, + 2DIAGNOSTIC, 10, -8.112891972607e-01, 2.150300739311e-03, 4.4599e-01, 2.8460e-03, + 2DIAGNOSTIC, 11, -8.123012548756e-01, 1.923630600507e-03, 4.4850e-01, 2.5198e-03, + 2DIAGNOSTIC, 12, -8.123295793384e-01, 1.592713812546e-03, 4.5188e-01, 3.3710e-03, + 2DIAGNOSTIC, 13, -8.123067451144e-01, 1.228040248916e-03, 4.5406e-01, 2.1870e-03, + 2DIAGNOSTIC, 14, -8.128177380334e-01, 8.892220924067e-04, 4.5621e-01, 2.1431e-03, + 2DIAGNOSTIC, 15, -8.134278932427e-01, 5.976708197393e-04, 4.5857e-01, 2.3620e-03, + 2DIAGNOSTIC, 16, -8.141948611840e-01, 3.897003739504e-04, 4.6066e-01, 2.0871e-03, + 2DIAGNOSTIC, 17, -8.148349861033e-01, 2.925652972018e-04, 4.6272e-01, 2.0630e-03, + 2DIAGNOSTIC, 18, -8.159701848336e-01, 2.418476456067e-04, 4.6509e-01, 2.3730e-03, + 2DIAGNOSTIC, 19, -8.164170269342e-01, 2.072385766362e-04, 4.6749e-01, 2.3980e-03, + 2DIAGNOSTIC, 20, -8.165263637868e-01, 2.031337322501e-04, 4.7256e-01, 5.0740e-03, + 2DIAGNOSTIC, 21, -8.167043967576e-01, 2.007941882287e-04, 4.7466e-01, 2.0931e-03, + 2DIAGNOSTIC, 22, -8.167098907497e-01, 1.806533491081e-04, 4.7678e-01, 2.1219e-03, + 2DIAGNOSTIC, 23, -8.167232003654e-01, 1.451622778173e-04, 4.7892e-01, 2.1410e-03, + 2DIAGNOSTIC, 24, -8.167450989335e-01, 1.068894518019e-04, 4.8110e-01, 2.1799e-03, + 2DIAGNOSTIC, 25, -8.167796094870e-01, 7.086238744437e-05, 4.8328e-01, 2.1830e-03, + 2DIAGNOSTIC, 26, -8.168332732135e-01, 4.216537863888e-05, 4.8550e-01, 2.2221e-03, + 2DIAGNOSTIC, 27, -8.167152059559e-01, 1.820166739487e-05, 4.8797e-01, 2.4621e-03, + 2DIAGNOSTIC, 28, -8.167600923138e-01, 9.105920847519e-06, 4.9010e-01, 2.1350e-03, + 2DIAGNOSTIC, 29, -8.166309168164e-01, 3.697119844756e-06, 4.9230e-01, 2.1951e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.913132561576e-01, 1.797693134862e+308, 7.0788e-01, 2.1558e-01, + 2DIAGNOSTIC, 2, -6.919041321960e-01, 1.797693134862e+308, 7.2061e-01, 1.2733e-02, + 2DIAGNOSTIC, 3, -6.926463383263e-01, 1.797693134862e+308, 7.3479e-01, 1.4179e-02, + 2DIAGNOSTIC, 4, -6.929977706003e-01, 1.797693134862e+308, 7.4936e-01, 1.4565e-02, + 2DIAGNOSTIC, 5, -6.932942304614e-01, 1.797693134862e+308, 7.6226e-01, 1.2899e-02, + 2DIAGNOSTIC, 6, -6.934522085568e-01, 1.797693134862e+308, 7.7602e-01, 1.3760e-02, + 2DIAGNOSTIC, 7, -6.939231551515e-01, 1.797693134862e+308, 7.8874e-01, 1.2726e-02, + 2DIAGNOSTIC, 8, -6.944748562507e-01, 1.797693134862e+308, 8.0552e-01, 1.6776e-02, + 2DIAGNOSTIC, 9, -6.947054780172e-01, 1.797693134862e+308, 8.2772e-01, 2.2204e-02, + 2DIAGNOSTIC, 10, -6.947040162258e-01, 3.138943586378e-04, 8.3978e-01, 1.2056e-02, + 2DIAGNOSTIC, 11, -6.950194950448e-01, 2.540386238697e-04, 8.5186e-01, 1.2083e-02, + 2DIAGNOSTIC, 12, -6.954241320458e-01, 2.146864408279e-04, 8.6389e-01, 1.2027e-02, + 2DIAGNOSTIC, 13, -6.954530430903e-01, 1.858146196800e-04, 8.7778e-01, 1.3896e-02, + 2DIAGNOSTIC, 14, -6.955238204095e-01, 1.569017538251e-04, 8.8976e-01, 1.1980e-02, + 2DIAGNOSTIC, 15, -6.954968942259e-01, 1.254527769557e-04, 9.0354e-01, 1.3776e-02, + 2DIAGNOSTIC, 16, -6.956325830810e-01, 9.394825141780e-05, 9.1563e-01, 1.2088e-02, + 2DIAGNOSTIC, 17, -6.962319907773e-01, 8.288139037066e-05, 9.2983e-01, 1.4204e-02, + 2DIAGNOSTIC, 18, -6.962644075497e-01, 7.839955676091e-05, 9.7757e-01, 4.7738e-02, + 2DIAGNOSTIC, 19, -6.962643287000e-01, 7.263897841402e-05, 9.9051e-01, 1.2939e-02, + 2DIAGNOSTIC, 20, -6.962643457118e-01, 6.095885005563e-05, 1.0035e+00, 1.3000e-02, + 2DIAGNOSTIC, 21, -6.962643744960e-01, 5.073815028269e-05, 1.0168e+00, 1.3289e-02, + 2DIAGNOSTIC, 22, -6.962644231408e-01, 4.417157335786e-05, 1.0304e+00, 1.3629e-02, + 2DIAGNOSTIC, 23, -6.962645053440e-01, 3.464373017460e-05, 1.0431e+00, 1.2666e-02, + 2DIAGNOSTIC, 24, -6.962646441432e-01, 2.420844312798e-05, 1.0559e+00, 1.2844e-02, + 2DIAGNOSTIC, 25, -6.962648782134e-01, 1.208779400268e-05, 1.0691e+00, 1.3197e-02, + 2DIAGNOSTIC, 26, -6.962652726826e-01, 1.760539834895e-06, 1.0821e+00, 1.2987e-02, + 2DIAGNOSTIC, 27, -6.962659271214e-01, 1.223578699423e-06, 1.0957e+00, 1.3579e-02, + 2DIAGNOSTIC, 28, -6.962670070766e-01, 1.210008143578e-06, 1.1092e+00, 1.3481e-02, + 2DIAGNOSTIC, 29, -6.962688211436e-01, 1.214772171146e-06, 1.1229e+00, 1.3699e-02, + 2DIAGNOSTIC, 30, -6.962718206668e-01, 1.248908932938e-06, 1.1365e+00, 1.3619e-02, + 2DIAGNOSTIC, 31, -6.962566622200e-01, 1.062909620438e-06, 1.1506e+00, 1.4072e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.875734013141e-01, 1.797693134862e+308, 1.5812e+00, 4.3061e-01, + 2DIAGNOSTIC, 2, -5.887793025081e-01, 1.797693134862e+308, 1.6803e+00, 9.9095e-02, + 2DIAGNOSTIC, 3, -5.899288970325e-01, 1.797693134862e+308, 1.7775e+00, 9.7209e-02, + 2DIAGNOSTIC, 4, -5.906198288983e-01, 1.797693134862e+308, 1.8740e+00, 9.6498e-02, + 2DIAGNOSTIC, 5, -5.910614939081e-01, 1.797693134862e+308, 1.9724e+00, 9.8463e-02, + 2DIAGNOSTIC, 6, -5.916896672310e-01, 1.797693134862e+308, 2.0859e+00, 1.1348e-01, + 2DIAGNOSTIC, 7, -5.930442385321e-01, 1.797693134862e+308, 2.2106e+00, 1.2467e-01, + 2DIAGNOSTIC, 8, -5.932013647287e-01, 1.797693134862e+308, 2.3050e+00, 9.4383e-02, + 2DIAGNOSTIC, 9, -5.932821290353e-01, 1.797693134862e+308, 2.5394e+00, 2.3444e-01, + 2DIAGNOSTIC, 10, -5.932819881308e-01, 6.365231730301e-04, 2.6258e+00, 8.6395e-02, + 2DIAGNOSTIC, 11, -5.932815125038e-01, 4.626270020722e-04, 2.7210e+00, 9.5179e-02, + 2DIAGNOSTIC, 12, -5.932833433999e-01, 3.232604630337e-04, 2.8159e+00, 9.4882e-02, + 2DIAGNOSTIC, 13, -5.932824287561e-01, 2.184349239701e-04, 2.8982e+00, 8.2361e-02, + 2DIAGNOSTIC, 14, -5.932802185090e-01, 1.331497332377e-04, 2.9934e+00, 9.5181e-02, + 2DIAGNOSTIC, 15, -5.932793680283e-01, 6.144762920954e-05, 3.0788e+00, 8.5355e-02, + 2DIAGNOSTIC, 16, -5.932793267910e-01, 1.106559323004e-05, 3.1751e+00, 9.6280e-02, + 2DIAGNOSTIC, 17, -5.932796037140e-01, 3.941738888055e-06, 3.2577e+00, 8.2628e-02, + 2DIAGNOSTIC, 18, -5.932813421369e-01, 1.593925692864e-06, 3.3531e+00, 9.5383e-02, + 2DIAGNOSTIC, 19, -5.932766307594e-01, 1.431702489986e-06, 3.4580e+00, 1.0490e-01, + 2DIAGNOSTIC, 20, -5.932725887986e-01, 1.213074892752e-06, 3.5646e+00, 1.0665e-01, + Elapsed time (stage 1): 3.6884e+00 + + +Total elapsed time: 1.0356e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:43:27 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:43:28 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55f81b3f14f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 68.202, -106.063] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f81b3f6fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f04120b0010 + Container manages memory: true + Size: 7207200 + Capacity: 7207200 + + Moving image = Image (0x55f81b3f2850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 68.202, -106.063] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f81b3eff30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f040e9b3010 + Container manages memory: true + Size: 7207200 + Capacity: 7207200 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55f81b409b80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 68.202, -106.063] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f81b3f6550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f040b2b6010 + Container manages memory: true + Size: 7207200 + Capacity: 7207200 + + Moving image = Image (0x55f81b40ed70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 68.202, -106.063] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f81b40cc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f0407bb9010 + Container manages memory: true + Size: 7207200 + Capacity: 7207200 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55f81b410f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 68.202, -106.063] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f81b40f3a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f04044bc010 + Container manages memory: true + Size: 7207200 + Capacity: 7207200 + + Moving image = Image (0x55f81b411540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 225, 143] + Spacing: [1, 1, 1] + Origin: [108.551, 68.202, -106.063] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55f81b4114d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f0400dbf010 + Container manages memory: true + Size: 7207200 + Capacity: 7207200 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.105182851420e-01, 1.797693134862e+308, 1.8426e-01, 1.8425e-01, + 2DIAGNOSTIC, 2, -6.138446697817e-01, 1.797693134862e+308, 1.8657e-01, 2.3110e-03, + 2DIAGNOSTIC, 3, -6.189039902221e-01, 1.797693134862e+308, 1.8871e-01, 2.1391e-03, + 2DIAGNOSTIC, 4, -6.270567198259e-01, 1.797693134862e+308, 1.9073e-01, 2.0239e-03, + 2DIAGNOSTIC, 5, -6.357192084472e-01, 1.797693134862e+308, 1.9276e-01, 2.0330e-03, + 2DIAGNOSTIC, 6, -6.414747285283e-01, 1.797693134862e+308, 1.9507e-01, 2.3072e-03, + 2DIAGNOSTIC, 7, -6.426487258359e-01, 1.797693134862e+308, 1.9728e-01, 2.2109e-03, + 2DIAGNOSTIC, 8, -6.426992495568e-01, 1.797693134862e+308, 1.9926e-01, 1.9820e-03, + 2DIAGNOSTIC, 9, -6.426231562466e-01, 1.797693134862e+308, 2.0179e-01, 2.5291e-03, + 2DIAGNOSTIC, 10, -6.428440788189e-01, 3.709878837532e-03, 2.0477e-01, 2.9759e-03, + 2DIAGNOSTIC, 11, -6.434684997344e-01, 2.653222216877e-03, 2.0762e-01, 2.8548e-03, + 2DIAGNOSTIC, 12, -6.435466701366e-01, 1.666637839952e-03, 2.1059e-01, 2.9659e-03, + 2DIAGNOSTIC, 13, -6.435566387495e-01, 8.575007037025e-04, 2.1272e-01, 2.1300e-03, + 2DIAGNOSTIC, 14, -6.435689724701e-01, 3.441045065761e-04, 2.1522e-01, 2.4991e-03, + 2DIAGNOSTIC, 15, -6.436530614440e-01, 1.248927587656e-04, 2.1826e-01, 3.0429e-03, + 2DIAGNOSTIC, 16, -6.435884466621e-01, 7.969874488344e-05, 2.2053e-01, 2.2712e-03, + 2DIAGNOSTIC, 17, -6.435926140163e-01, 6.368547855802e-05, 2.2273e-01, 2.1992e-03, + 2DIAGNOSTIC, 18, -6.435989030271e-01, 4.554436327032e-05, 2.2518e-01, 2.4478e-03, + 2DIAGNOSTIC, 19, -6.440222941854e-01, 3.344439459115e-05, 2.2761e-01, 2.4290e-03, + 2DIAGNOSTIC, 20, -6.445311894306e-01, 3.520914559733e-05, 2.3058e-01, 2.9750e-03, + 2DIAGNOSTIC, 21, -6.445387174518e-01, 4.685580605191e-05, 2.3297e-01, 2.3880e-03, + 2DIAGNOSTIC, 22, -6.445438648189e-01, 5.517668111511e-05, 2.3515e-01, 2.1811e-03, + 2DIAGNOSTIC, 23, -6.444129352942e-01, 5.552228999308e-05, 2.3758e-01, 2.4309e-03, + 2DIAGNOSTIC, 24, -6.441536187305e-01, 4.603661123076e-05, 2.4086e-01, 3.2771e-03, + 2DIAGNOSTIC, 25, -6.440176416048e-01, 3.215666985731e-05, 2.4355e-01, 2.6851e-03, + 2DIAGNOSTIC, 26, -6.440176618941e-01, 1.540358134657e-05, 2.4571e-01, 2.1620e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.510405411917e-01, 1.797693134862e+308, 4.6639e-01, 2.2069e-01, + 2DIAGNOSTIC, 2, -5.516301610954e-01, 1.797693134862e+308, 4.8120e-01, 1.4813e-02, + 2DIAGNOSTIC, 3, -5.517296371793e-01, 1.797693134862e+308, 4.9575e-01, 1.4548e-02, + 2DIAGNOSTIC, 4, -5.517286748704e-01, 1.797693134862e+308, 5.0876e-01, 1.3010e-02, + 2DIAGNOSTIC, 5, -5.517825595887e-01, 1.797693134862e+308, 5.2383e-01, 1.5063e-02, + 2DIAGNOSTIC, 6, -5.517847447215e-01, 1.797693134862e+308, 5.3701e-01, 1.3185e-02, + 2DIAGNOSTIC, 7, -5.517941090064e-01, 1.797693134862e+308, 5.5054e-01, 1.3533e-02, + 2DIAGNOSTIC, 8, -5.518593605286e-01, 1.797693134862e+308, 5.6469e-01, 1.4146e-02, + 2DIAGNOSTIC, 9, -5.518765042238e-01, 1.797693134862e+308, 5.7923e-01, 1.4540e-02, + 2DIAGNOSTIC, 10, -5.518852559452e-01, 6.406637808327e-05, 5.9421e-01, 1.4979e-02, + 2DIAGNOSTIC, 11, -5.518585218808e-01, 2.656532394368e-05, 6.0959e-01, 1.5385e-02, + 2DIAGNOSTIC, 12, -5.518586236484e-01, 1.845451760428e-05, 6.2484e-01, 1.5243e-02, + 2DIAGNOSTIC, 13, -5.518424200198e-01, 1.343805352480e-05, 6.4036e-01, 1.5523e-02, + 2DIAGNOSTIC, 14, -5.518388332881e-01, 7.902640403332e-06, 6.5406e-01, 1.3695e-02, + 2DIAGNOSTIC, 15, -5.518269468618e-01, 4.064979398408e-06, 6.7033e-01, 1.6276e-02, + 2DIAGNOSTIC, 16, -5.518406616551e-01, 1.080850727045e-06, 6.8527e-01, 1.4939e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.640478970565e-01, 1.797693134862e+308, 1.0433e+00, 3.5804e-01, + 2DIAGNOSTIC, 2, -4.648509166569e-01, 1.797693134862e+308, 1.1405e+00, 9.7239e-02, + 2DIAGNOSTIC, 3, -4.652183451016e-01, 1.797693134862e+308, 1.2590e+00, 1.1850e-01, + 2DIAGNOSTIC, 4, -4.652719503746e-01, 1.797693134862e+308, 1.3753e+00, 1.1626e-01, + 2DIAGNOSTIC, 5, -4.652764369127e-01, 1.797693134862e+308, 1.4840e+00, 1.0867e-01, + 2DIAGNOSTIC, 6, -4.652747926159e-01, 1.797693134862e+308, 1.5796e+00, 9.5627e-02, + 2DIAGNOSTIC, 7, -4.652732639569e-01, 1.797693134862e+308, 1.6584e+00, 7.8742e-02, + 2DIAGNOSTIC, 8, -4.652760556062e-01, 1.797693134862e+308, 1.7583e+00, 9.9919e-02, + 2DIAGNOSTIC, 9, -4.652837859867e-01, 1.797693134862e+308, 1.9277e+00, 1.6944e-01, + 2DIAGNOSTIC, 10, -4.652842893568e-01, 1.043366879520e-04, 2.0369e+00, 1.0919e-01, + 2DIAGNOSTIC, 11, -4.652846606090e-01, 3.062468292905e-05, 2.1301e+00, 9.3186e-02, + 2DIAGNOSTIC, 12, -4.652810036105e-01, 6.925509377351e-06, 2.2213e+00, 9.1185e-02, + 2DIAGNOSTIC, 13, -4.652819434208e-01, 3.732429995226e-06, 2.3386e+00, 1.1734e-01, + 2DIAGNOSTIC, 14, -4.652808012287e-01, 3.151945687285e-06, 2.4308e+00, 9.2153e-02, + 2DIAGNOSTIC, 15, -4.652796584000e-01, 2.705616663948e-06, 2.5201e+00, 8.9357e-02, + 2DIAGNOSTIC, 16, -4.652771603423e-01, 2.112620613448e-06, 2.5994e+00, 7.9260e-02, + 2DIAGNOSTIC, 17, -4.652776853604e-01, 1.546123484096e-06, 2.7035e+00, 1.0414e-01, + 2DIAGNOSTIC, 18, -4.652784345723e-01, 1.183631132655e-06, 2.7987e+00, 9.5234e-02, + 2DIAGNOSTIC, 19, -4.652782870664e-01, 1.153859178801e-06, 2.8928e+00, 9.4053e-02, + 2DIAGNOSTIC, 20, -4.652761675203e-01, 1.126549630373e-06, 3.0118e+00, 1.1904e-01, + 2DIAGNOSTIC, 21, -4.652757014931e-01, 1.148530490470e-06, 3.1204e+00, 1.0855e-01, + 2DIAGNOSTIC, 22, -4.652724241870e-01, 1.008051449071e-06, 3.2150e+00, 9.4620e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.014938270061e-01, 1.797693134862e+308, 4.4407e+00, 1.2257e+00, + 2DIAGNOSTIC, 2, -4.017463166921e-01, 1.797693134862e+308, 5.7233e+00, 1.2825e+00, + 2DIAGNOSTIC, 3, -4.017462904653e-01, 1.797693134862e+308, 6.2522e+00, 5.2890e-01, + 2DIAGNOSTIC, 4, -4.017464008559e-01, 1.797693134862e+308, 7.0232e+00, 7.7106e-01, + 2DIAGNOSTIC, 5, -4.017465287998e-01, 1.797693134862e+308, 7.5829e+00, 5.5966e-01, + 2DIAGNOSTIC, 6, -4.017463829701e-01, 1.797693134862e+308, 8.2008e+00, 6.1793e-01, + 2DIAGNOSTIC, 7, -4.017464147508e-01, 1.797693134862e+308, 8.8153e+00, 6.1447e-01, + 2DIAGNOSTIC, 8, -4.017462330755e-01, 1.797693134862e+308, 9.4147e+00, 5.9942e-01, + 2DIAGNOSTIC, 9, -4.017462508055e-01, 1.797693134862e+308, 9.9634e+00, 5.4873e-01, + 2DIAGNOSTIC, 10, -4.017461187234e-01, 2.102221395311e-05, 1.0578e+01, 6.1426e-01, + 2DIAGNOSTIC, 11, -4.017459855987e-01, 2.845717757091e-06, 1.1159e+01, 5.8131e-01, + 2DIAGNOSTIC, 12, -4.017456593464e-01, 2.569986580464e-06, 1.1815e+01, 6.5573e-01, + 2DIAGNOSTIC, 13, -4.017455758544e-01, 2.338260397181e-06, 1.2367e+01, 5.5230e-01, + 2DIAGNOSTIC, 14, -4.017453885545e-01, 2.145241882093e-06, 1.2914e+01, 5.4724e-01, + 2DIAGNOSTIC, 15, -4.017452771899e-01, 1.990491775239e-06, 1.3472e+01, 5.5751e-01, + 2DIAGNOSTIC, 16, -4.017449957432e-01, 1.848170766316e-06, 1.4044e+01, 5.7199e-01, + 2DIAGNOSTIC, 17, -4.017447505512e-01, 1.727155046212e-06, 1.4595e+01, 5.5148e-01, + 2DIAGNOSTIC, 18, -4.017446926418e-01, 1.623514333172e-06, 1.5213e+01, 6.1796e-01, + 2DIAGNOSTIC, 19, -4.017449316350e-01, 1.553472951554e-06, 1.5827e+01, 6.1330e-01, + 2DIAGNOSTIC, 20, -4.017446947889e-01, 1.488278869068e-06, 1.6353e+01, 5.2676e-01, + 2DIAGNOSTIC, 21, -4.017448983868e-01, 1.441871159039e-06, 1.7148e+01, 7.9426e-01, + 2DIAGNOSTIC, 22, -4.017446537988e-01, 1.388101780929e-06, 1.7752e+01, 6.0480e-01, + 2DIAGNOSTIC, 23, -4.017447008124e-01, 1.343483065859e-06, 1.8279e+01, 5.2643e-01, + 2DIAGNOSTIC, 24, -4.017444443179e-01, 1.292973938603e-06, 1.8742e+01, 4.6283e-01, + 2DIAGNOSTIC, 25, -4.017442162802e-01, 1.240245231030e-06, 1.9361e+01, 6.1910e-01, + 2DIAGNOSTIC, 26, -4.017444165020e-01, 1.192737478076e-06, 1.9985e+01, 6.2397e-01, + 2DIAGNOSTIC, 27, -4.017443284353e-01, 1.142682755383e-06, 2.0533e+01, 5.4819e-01, + 2DIAGNOSTIC, 28, -4.017442821829e-01, 1.096815733105e-06, 2.1221e+01, 6.8788e-01, + 2DIAGNOSTIC, 29, -4.017443380132e-01, 1.065349872001e-06, 2.1857e+01, 6.3600e-01, + 2DIAGNOSTIC, 30, -4.017440811341e-01, 1.027145574248e-06, 2.2473e+01, 6.1621e-01, + 2DIAGNOSTIC, 31, -4.017441393694e-01, 1.000717925831e-06, 2.3024e+01, 5.5124e-01, + Elapsed time (stage 0): 2.3403e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.364130492927e-01, 1.797693134862e+308, 1.6562e-01, 1.6562e-01, + 2DIAGNOSTIC, 2, -6.382402671279e-01, 1.797693134862e+308, 1.6766e-01, 2.0440e-03, + 2DIAGNOSTIC, 3, -6.407205947376e-01, 1.797693134862e+308, 1.6965e-01, 1.9829e-03, + 2DIAGNOSTIC, 4, -6.441882506921e-01, 1.797693134862e+308, 1.7165e-01, 2.0020e-03, + 2DIAGNOSTIC, 5, -6.476035426516e-01, 1.797693134862e+308, 1.7357e-01, 1.9219e-03, + 2DIAGNOSTIC, 6, -6.503651481004e-01, 1.797693134862e+308, 1.7553e-01, 1.9579e-03, + 2DIAGNOSTIC, 7, -6.522676351546e-01, 1.797693134862e+308, 1.7800e-01, 2.4700e-03, + 2DIAGNOSTIC, 8, -6.529478490790e-01, 1.797693134862e+308, 1.8096e-01, 2.9650e-03, + 2DIAGNOSTIC, 9, -6.529967711388e-01, 1.797693134862e+308, 1.8290e-01, 1.9350e-03, + 2DIAGNOSTIC, 10, -6.531262571444e-01, 1.866810290228e-03, 1.8516e-01, 2.2640e-03, + 2DIAGNOSTIC, 11, -6.532947814967e-01, 1.395030215316e-03, 1.8733e-01, 2.1670e-03, + 2DIAGNOSTIC, 12, -6.534833369278e-01, 9.506853293833e-04, 1.8944e-01, 2.1119e-03, + 2DIAGNOSTIC, 13, -6.536740584371e-01, 5.786223789028e-04, 1.9155e-01, 2.1071e-03, + 2DIAGNOSTIC, 14, -6.538982320643e-01, 3.221344995060e-04, 1.9372e-01, 2.1679e-03, + 2DIAGNOSTIC, 15, -6.541854864246e-01, 1.775401263592e-04, 1.9590e-01, 2.1801e-03, + 2DIAGNOSTIC, 16, -6.552092220044e-01, 1.371661550322e-04, 1.9863e-01, 2.7339e-03, + 2DIAGNOSTIC, 17, -6.553756271371e-01, 1.412460148451e-04, 2.0159e-01, 2.9631e-03, + 2DIAGNOSTIC, 18, -6.554581757325e-01, 1.507751939425e-04, 2.0378e-01, 2.1820e-03, + 2DIAGNOSTIC, 19, -6.555319231746e-01, 1.485918625404e-04, 2.0592e-01, 2.1420e-03, + 2DIAGNOSTIC, 20, -6.565135296559e-01, 1.570724255508e-04, 2.0865e-01, 2.7311e-03, + 2DIAGNOSTIC, 21, -6.566439816962e-01, 1.555548853872e-04, 2.1091e-01, 2.2650e-03, + 2DIAGNOSTIC, 22, -6.578236772759e-01, 1.670091952802e-04, 2.1470e-01, 3.7899e-03, + 2DIAGNOSTIC, 23, -6.578274387803e-01, 1.655736103365e-04, 2.1688e-01, 2.1729e-03, + 2DIAGNOSTIC, 24, -6.578903578432e-01, 1.544125500948e-04, 2.1941e-01, 2.5339e-03, + 2DIAGNOSTIC, 25, -6.580466475829e-01, 1.370632005171e-04, 2.2166e-01, 2.2531e-03, + 2DIAGNOSTIC, 26, -6.581038222158e-01, 1.261276645967e-04, 2.2421e-01, 2.5508e-03, + 2DIAGNOSTIC, 27, -6.581169093783e-01, 1.070698389098e-04, 2.2676e-01, 2.5489e-03, + 2DIAGNOSTIC, 28, -6.580684453974e-01, 8.008577211966e-05, 2.2934e-01, 2.5749e-03, + 2DIAGNOSTIC, 29, -6.580347048675e-01, 4.802657695688e-05, 2.3188e-01, 2.5380e-03, + 2DIAGNOSTIC, 30, -6.579047839035e-01, 2.615589662042e-05, 2.3410e-01, 2.2252e-03, + 2DIAGNOSTIC, 31, -6.580178888991e-01, 6.302988771432e-06, 2.3634e-01, 2.2371e-03, + 2DIAGNOSTIC, 32, -6.584296270391e-01, 8.798223626712e-06, 2.3886e-01, 2.5210e-03, + 2DIAGNOSTIC, 33, -6.589762357370e-01, 1.751319462849e-05, 2.4197e-01, 3.1121e-03, + 2DIAGNOSTIC, 34, -6.590457685521e-01, 2.569196379878e-05, 2.4479e-01, 2.8231e-03, + 2DIAGNOSTIC, 35, -6.589392973860e-01, 3.180307099354e-05, 2.4737e-01, 2.5711e-03, + 2DIAGNOSTIC, 36, -6.589032976369e-01, 3.499141205704e-05, 2.4989e-01, 2.5229e-03, + 2DIAGNOSTIC, 37, -6.585536914563e-01, 3.069694783000e-05, 2.5215e-01, 2.2640e-03, + 2DIAGNOSTIC, 38, -6.585271557529e-01, 2.290971146026e-05, 2.5437e-01, 2.2159e-03, + 2DIAGNOSTIC, 39, -6.587029973664e-01, 1.505879851404e-05, 2.5688e-01, 2.5129e-03, + 2DIAGNOSTIC, 40, -6.588550160055e-01, 6.498756869942e-06, 2.5921e-01, 2.3260e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.464229050396e-01, 1.797693134862e+308, 4.5426e-01, 1.9505e-01, + 2DIAGNOSTIC, 2, -5.472588964078e-01, 1.797693134862e+308, 4.6901e-01, 1.4751e-02, + 2DIAGNOSTIC, 3, -5.479547070656e-01, 1.797693134862e+308, 4.8353e-01, 1.4522e-02, + 2DIAGNOSTIC, 4, -5.486560914453e-01, 1.797693134862e+308, 4.9863e-01, 1.5102e-02, + 2DIAGNOSTIC, 5, -5.493802718480e-01, 1.797693134862e+308, 5.1299e-01, 1.4353e-02, + 2DIAGNOSTIC, 6, -5.505511797013e-01, 1.797693134862e+308, 5.2743e-01, 1.4440e-02, + 2DIAGNOSTIC, 7, -5.530706589781e-01, 1.797693134862e+308, 5.4794e-01, 2.0516e-02, + 2DIAGNOSTIC, 8, -5.535554548892e-01, 1.797693134862e+308, 5.6245e-01, 1.4509e-02, + 2DIAGNOSTIC, 9, -5.538763997768e-01, 1.797693134862e+308, 5.7670e-01, 1.4253e-02, + 2DIAGNOSTIC, 10, -5.543421995362e-01, 1.029890067057e-03, 5.9630e-01, 1.9601e-02, + 2DIAGNOSTIC, 11, -5.545120345938e-01, 8.876668246655e-04, 6.1571e-01, 1.9408e-02, + 2DIAGNOSTIC, 12, -5.545257583810e-01, 7.246920765428e-04, 6.2964e-01, 1.3926e-02, + 2DIAGNOSTIC, 13, -5.547056818479e-01, 5.563991255972e-04, 6.4355e-01, 1.3915e-02, + 2DIAGNOSTIC, 14, -5.548342791304e-01, 3.933779754437e-04, 6.5751e-01, 1.3959e-02, + 2DIAGNOSTIC, 15, -5.549322103606e-01, 2.445229528710e-04, 6.7153e-01, 1.4020e-02, + 2DIAGNOSTIC, 16, -5.550707758573e-01, 1.322147755600e-04, 6.8758e-01, 1.6046e-02, + 2DIAGNOSTIC, 17, -5.551095055289e-01, 9.850094007251e-05, 7.0946e-01, 2.1883e-02, + 2DIAGNOSTIC, 18, -5.550969890242e-01, 7.306263728998e-05, 7.2609e-01, 1.6628e-02, + 2DIAGNOSTIC, 19, -5.551339684339e-01, 5.309518789413e-05, 7.4059e-01, 1.4496e-02, + 2DIAGNOSTIC, 20, -5.551721034007e-01, 4.318450096213e-05, 7.5400e-01, 1.3411e-02, + 2DIAGNOSTIC, 21, -5.551885840975e-01, 3.491379363622e-05, 7.6744e-01, 1.3447e-02, + 2DIAGNOSTIC, 22, -5.552117923587e-01, 2.508405796431e-05, 7.8311e-01, 1.5666e-02, + 2DIAGNOSTIC, 23, -5.552288341132e-01, 1.829901907531e-05, 7.9782e-01, 1.4711e-02, + 2DIAGNOSTIC, 24, -5.552207082800e-01, 1.305090926546e-05, 8.1384e-01, 1.6016e-02, + 2DIAGNOSTIC, 25, -5.552425194330e-01, 9.507572020520e-06, 8.3374e-01, 1.9901e-02, + 2DIAGNOSTIC, 26, -5.552311468833e-01, 7.944866696870e-06, 8.4791e-01, 1.4169e-02, + 2DIAGNOSTIC, 27, -5.552186531685e-01, 6.390742025818e-06, 8.6216e-01, 1.4257e-02, + 2DIAGNOSTIC, 28, -5.552220213534e-01, 4.287128004404e-06, 8.7597e-01, 1.3809e-02, + 2DIAGNOSTIC, 29, -5.552242782916e-01, 2.709612296224e-06, 8.9517e-01, 1.9199e-02, + 2DIAGNOSTIC, 30, -5.552250941840e-01, 1.744583025431e-06, 9.0898e-01, 1.3808e-02, + 2DIAGNOSTIC, 31, -5.552255426430e-01, 1.051651590651e-06, 9.2280e-01, 1.3818e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.639500048127e-01, 1.797693134862e+308, 1.2618e+00, 3.3896e-01, + 2DIAGNOSTIC, 2, -4.648999429623e-01, 1.797693134862e+308, 1.3603e+00, 9.8591e-02, + 2DIAGNOSTIC, 3, -4.656666848912e-01, 1.797693134862e+308, 1.4580e+00, 9.7651e-02, + 2DIAGNOSTIC, 4, -4.659957027877e-01, 1.797693134862e+308, 1.5578e+00, 9.9781e-02, + 2DIAGNOSTIC, 5, -4.661819810165e-01, 1.797693134862e+308, 1.6563e+00, 9.8563e-02, + 2DIAGNOSTIC, 6, -4.664055418235e-01, 1.797693134862e+308, 1.7550e+00, 9.8626e-02, + 2DIAGNOSTIC, 7, -4.665847699657e-01, 1.797693134862e+308, 1.8932e+00, 1.3818e-01, + 2DIAGNOSTIC, 8, -4.666539886724e-01, 1.797693134862e+308, 1.9959e+00, 1.0273e-01, + 2DIAGNOSTIC, 9, -4.666996256492e-01, 1.797693134862e+308, 2.1069e+00, 1.1098e-01, + 2DIAGNOSTIC, 10, -4.667956018459e-01, 3.339338462765e-04, 2.2316e+00, 1.2471e-01, + 2DIAGNOSTIC, 11, -4.668356596050e-01, 2.061351029667e-04, 2.3420e+00, 1.1041e-01, + 2DIAGNOSTIC, 12, -4.668544455130e-01, 1.297364866315e-04, 2.4448e+00, 1.0279e-01, + 2DIAGNOSTIC, 13, -4.668590289796e-01, 8.961804432711e-05, 2.5531e+00, 1.0828e-01, + 2DIAGNOSTIC, 14, -4.668636810655e-01, 6.183473456474e-05, 2.6820e+00, 1.2898e-01, + 2DIAGNOSTIC, 15, -4.668658237650e-01, 3.978374919061e-05, 2.7758e+00, 9.3734e-02, + 2DIAGNOSTIC, 16, -4.668678182178e-01, 2.545601905177e-05, 2.8741e+00, 9.8280e-02, + 2DIAGNOSTIC, 17, -4.668686088772e-01, 1.709818730749e-05, 2.9721e+00, 9.8030e-02, + 2DIAGNOSTIC, 18, -4.668702516043e-01, 1.067527201863e-05, 3.1112e+00, 1.3909e-01, + 2DIAGNOSTIC, 19, -4.668704026383e-01, 5.505942836131e-06, 3.2119e+00, 1.0075e-01, + 2DIAGNOSTIC, 20, -4.668704857375e-01, 3.397974318954e-06, 3.3117e+00, 9.9736e-02, + 2DIAGNOSTIC, 21, -4.668706255113e-01, 2.476681970599e-06, 3.4112e+00, 9.9552e-02, + 2DIAGNOSTIC, 22, -4.668716342581e-01, 2.095862468146e-06, 3.7505e+00, 3.3928e-01, + 2DIAGNOSTIC, 23, -4.668716342525e-01, 1.805409499386e-06, 4.0915e+00, 3.4105e-01, + 2DIAGNOSTIC, 24, -4.668716342525e-01, 1.617305794809e-06, 4.2040e+00, 1.1248e-01, + 2DIAGNOSTIC, 25, -4.668716342525e-01, 1.468999581582e-06, 4.3208e+00, 1.1676e-01, + 2DIAGNOSTIC, 26, -4.668716342525e-01, 1.360282387425e-06, 4.4326e+00, 1.1184e-01, + 2DIAGNOSTIC, 27, -4.668716342525e-01, 1.263274162326e-06, 4.5384e+00, 1.0573e-01, + 2DIAGNOSTIC, 28, -4.668716342525e-01, 1.200883822314e-06, 4.6632e+00, 1.2480e-01, + 2DIAGNOSTIC, 29, -4.668716342525e-01, 1.140255172220e-06, 4.7735e+00, 1.1035e-01, + 2DIAGNOSTIC, 30, -4.668716342525e-01, 1.081492786201e-06, 4.8855e+00, 1.1204e-01, + 2DIAGNOSTIC, 31, -4.668716342525e-01, 1.026763056959e-06, 4.9951e+00, 1.0954e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.010827082902e-01, 1.797693134862e+308, 6.2514e+00, 1.2563e+00, + 2DIAGNOSTIC, 2, -4.013720325502e-01, 1.797693134862e+308, 6.8531e+00, 6.0167e-01, + 2DIAGNOSTIC, 3, -4.014815563093e-01, 1.797693134862e+308, 7.4455e+00, 5.9247e-01, + 2DIAGNOSTIC, 4, -4.015970440744e-01, 1.797693134862e+308, 8.3110e+00, 8.6551e-01, + 2DIAGNOSTIC, 5, -4.016216190841e-01, 1.797693134862e+308, 8.9221e+00, 6.1104e-01, + 2DIAGNOSTIC, 6, -4.016351644173e-01, 1.797693134862e+308, 9.5226e+00, 6.0053e-01, + 2DIAGNOSTIC, 7, -4.016785103972e-01, 1.797693134862e+308, 1.0860e+01, 1.3377e+00, + 2DIAGNOSTIC, 8, -4.016785164513e-01, 1.797693134862e+308, 1.1631e+01, 7.7110e-01, + 2DIAGNOSTIC, 9, -4.016785166734e-01, 1.797693134862e+308, 1.2532e+01, 9.0029e-01, + 2DIAGNOSTIC, 10, -4.016785166879e-01, 7.694040600893e-05, 1.4514e+01, 1.9819e+00, + 2DIAGNOSTIC, 11, -4.016785166879e-01, 3.953322231222e-05, 1.5225e+01, 7.1173e-01, + 2DIAGNOSTIC, 12, -4.016785166879e-01, 2.201534952766e-05, 1.5975e+01, 7.4939e-01, + 2DIAGNOSTIC, 13, -4.016785166879e-01, 1.124637598612e-05, 1.6838e+01, 8.6332e-01, + 2DIAGNOSTIC, 14, -4.016785166879e-01, 7.063429772178e-06, 1.7529e+01, 6.9068e-01, + 2DIAGNOSTIC, 15, -4.016785166879e-01, 4.166762208130e-06, 1.8204e+01, 6.7511e-01, + 2DIAGNOSTIC, 16, -4.016785166879e-01, 1.988804361489e-06, 1.9034e+01, 8.3001e-01, + 2DIAGNOSTIC, 17, -4.016785166879e-01, 1.871533395710e-06, 1.9709e+01, 6.7478e-01, + 2DIAGNOSTIC, 18, -4.016785166879e-01, 1.767531662818e-06, 2.0318e+01, 6.0889e-01, + 2DIAGNOSTIC, 19, -4.016785166879e-01, 1.674487525451e-06, 2.0921e+01, 6.0312e-01, + 2DIAGNOSTIC, 20, -4.016785166879e-01, 1.590749796894e-06, 2.1748e+01, 8.2748e-01, + 2DIAGNOSTIC, 21, -4.016785166879e-01, 1.514988301407e-06, 2.2435e+01, 6.8691e-01, + 2DIAGNOSTIC, 22, -4.016785166879e-01, 1.446115213077e-06, 2.3098e+01, 6.6263e-01, + 2DIAGNOSTIC, 23, -4.016785166879e-01, 1.383231919512e-06, 2.3770e+01, 6.7251e-01, + 2DIAGNOSTIC, 24, -4.016785166879e-01, 1.325589596757e-06, 2.4601e+01, 8.3080e-01, + 2DIAGNOSTIC, 25, -4.016785166879e-01, 1.272559248235e-06, 2.5271e+01, 6.6948e-01, + 2DIAGNOSTIC, 26, -4.016785166879e-01, 1.223608657640e-06, 2.5940e+01, 6.6986e-01, + 2DIAGNOSTIC, 27, -4.016785166879e-01, 1.178284465053e-06, 2.6577e+01, 6.3693e-01, + 2DIAGNOSTIC, 28, -4.016785166879e-01, 1.136198083583e-06, 2.7328e+01, 7.5112e-01, + 2DIAGNOSTIC, 29, -4.016785166879e-01, 1.097014530396e-06, 2.7959e+01, 6.3086e-01, + 2DIAGNOSTIC, 30, -4.016785166879e-01, 1.060443491796e-06, 2.8588e+01, 6.2828e-01, + 2DIAGNOSTIC, 31, -4.016785166879e-01, 1.026232117785e-06, 2.9258e+01, 6.7053e-01, + Elapsed time (stage 1): 2.9640e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.101367660484e-01, 1.797693134862e+308, 2.2132e-01, 2.2132e-01, + 1DIAGNOSTIC, 2, -9.199071010654e-01, 1.797693134862e+308, 3.1731e-01, 9.5984e-02, + 1DIAGNOSTIC, 3, -9.274026376889e-01, 1.797693134862e+308, 4.1222e-01, 9.4908e-02, + 1DIAGNOSTIC, 4, -9.336856334490e-01, 1.797693134862e+308, 5.0872e-01, 9.6500e-02, + 1DIAGNOSTIC, 5, -9.390201993514e-01, 1.797693134862e+308, 6.0217e-01, 9.3450e-02, + 1DIAGNOSTIC, 6, -9.430252032070e-01, 1.797693134862e+308, 6.9769e-01, 9.5528e-02, + 1DIAGNOSTIC, 7, -9.466846055920e-01, 1.797693134862e+308, 7.9177e-01, 9.4074e-02, + 1DIAGNOSTIC, 8, -9.499215896784e-01, 1.797693134862e+308, 8.8594e-01, 9.4172e-02, + 1DIAGNOSTIC, 9, -9.524546661821e-01, 1.797693134862e+308, 9.7806e-01, 9.2117e-02, + 1DIAGNOSTIC, 10, -9.544965129084e-01, 2.892787456442e-03, 1.0744e+00, 9.6297e-02, + 1DIAGNOSTIC, 11, -9.563360445891e-01, 2.174970095164e-03, 1.1715e+00, 9.7152e-02, + 1DIAGNOSTIC, 12, -9.576252693790e-01, 1.659319625450e-03, 1.2668e+00, 9.5293e-02, + 1DIAGNOSTIC, 13, -9.582482860897e-01, 1.260695397642e-03, 1.3636e+00, 9.6797e-02, + 1DIAGNOSTIC, 14, -9.580262248805e-01, 9.344968243959e-04, 1.4633e+00, 9.9680e-02, + 1DIAGNOSTIC, 15, -9.586793359214e-01, 6.868313360710e-04, 1.5604e+00, 9.7104e-02, + 1DIAGNOSTIC, 16, -9.586538485215e-01, 4.811272860816e-04, 1.6601e+00, 9.9742e-02, + 1DIAGNOSTIC, 17, -9.591300782211e-01, 3.279755820843e-04, 1.7525e+00, 9.2384e-02, + 1DIAGNOSTIC, 18, -9.590279441540e-01, 2.136440024829e-04, 1.8453e+00, 9.2835e-02, + 1DIAGNOSTIC, 19, -9.593364891593e-01, 1.366083157254e-04, 1.9444e+00, 9.9046e-02, + 1DIAGNOSTIC, 20, -9.592517715883e-01, 8.358404212334e-05, 2.0372e+00, 9.2777e-02, + 1DIAGNOSTIC, 21, -9.594955422429e-01, 5.729390555092e-05, 2.1323e+00, 9.5185e-02, + 1DIAGNOSTIC, 22, -9.594207166732e-01, 4.446859807573e-05, 2.2328e+00, 1.0042e-01, + 1DIAGNOSTIC, 23, -9.595658723525e-01, 3.895662449618e-05, 2.3313e+00, 9.8537e-02, + 1DIAGNOSTIC, 24, -9.595014938327e-01, 2.660873672760e-05, 2.4303e+00, 9.9000e-02, + 1DIAGNOSTIC, 25, -9.596568675683e-01, 2.263554920132e-05, 2.5274e+00, 9.7115e-02, + 1DIAGNOSTIC, 26, -9.595905139489e-01, 1.572110572587e-05, 2.6303e+00, 1.0292e-01, + 1DIAGNOSTIC, 27, -9.596939681404e-01, 1.446161461887e-05, 2.7389e+00, 1.0861e-01, + 1DIAGNOSTIC, 28, -9.596401474598e-01, 1.028096264048e-05, 2.8403e+00, 1.0135e-01, + 1DIAGNOSTIC, 29, -9.597227398667e-01, 9.616453490166e-06, 2.9359e+00, 9.5619e-02, + 1DIAGNOSTIC, 30, -9.596821594392e-01, 6.855811676101e-06, 3.0315e+00, 9.5540e-02, + 1DIAGNOSTIC, 31, -9.597469574139e-01, 6.739260348734e-06, 3.1272e+00, 9.5744e-02, + 1DIAGNOSTIC, 32, -9.597179905164e-01, 5.077917397490e-06, 3.2228e+00, 9.5610e-02, + 1DIAGNOSTIC, 33, -9.597765671011e-01, 5.007639710092e-06, 3.3150e+00, 9.2149e-02, + 1DIAGNOSTIC, 34, -9.597520714343e-01, 3.729809868298e-06, 3.4140e+00, 9.9007e-02, + 1DIAGNOSTIC, 35, -9.597991510434e-01, 4.014129423309e-06, 3.5110e+00, 9.7067e-02, + 1DIAGNOSTIC, 36, -9.597788993712e-01, 3.239270277268e-06, 3.6124e+00, 1.0136e-01, + 1DIAGNOSTIC, 37, -9.598211818338e-01, 3.478512699641e-06, 3.7069e+00, 9.4498e-02, + 1DIAGNOSTIC, 38, -9.597961832710e-01, 2.812376540547e-06, 3.8034e+00, 9.6516e-02, + 1DIAGNOSTIC, 39, -9.598369606606e-01, 2.953780535921e-06, 3.8973e+00, 9.3928e-02, + 1DIAGNOSTIC, 40, -9.598079369382e-01, 2.346442391461e-06, 3.9946e+00, 9.7270e-02, + 1DIAGNOSTIC, 41, -9.598431101805e-01, 2.362703678524e-06, 4.0898e+00, 9.5237e-02, + 1DIAGNOSTIC, 42, -9.598054605592e-01, 1.737391225904e-06, 4.1847e+00, 9.4814e-02, + 1DIAGNOSTIC, 43, -9.598335696686e-01, 1.662911839555e-06, 4.2797e+00, 9.5014e-02, + 1DIAGNOSTIC, 44, -9.597904833679e-01, 1.032612079743e-06, 4.3747e+00, 9.5055e-02, + 1DIAGNOSTIC, 45, -9.598132815675e-01, 8.758053058819e-07, 4.4697e+00, 9.4974e-02, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.232502108416e-01, 1.797693134862e+308, 5.2613e+00, 7.9162e-01, + 1DIAGNOSTIC, 2, -9.269481738913e-01, 1.797693134862e+308, 5.9202e+00, 6.5883e-01, + 1DIAGNOSTIC, 3, -9.311351010051e-01, 1.797693134862e+308, 6.5904e+00, 6.7022e-01, + 1DIAGNOSTIC, 4, -9.340608300840e-01, 1.797693134862e+308, 7.2534e+00, 6.6307e-01, + 1DIAGNOSTIC, 5, -9.363090583705e-01, 1.797693134862e+308, 7.9139e+00, 6.6043e-01, + 1DIAGNOSTIC, 6, -9.380640599757e-01, 1.797693134862e+308, 8.5820e+00, 6.6811e-01, + 1DIAGNOSTIC, 7, -9.394964217221e-01, 1.797693134862e+308, 9.2442e+00, 6.6223e-01, + 1DIAGNOSTIC, 8, -9.406085657020e-01, 1.797693134862e+308, 9.8961e+00, 6.5194e-01, + 1DIAGNOSTIC, 9, -9.414726458910e-01, 1.797693134862e+308, 1.0557e+01, 6.6044e-01, + 1DIAGNOSTIC, 10, -9.422362935118e-01, 1.253644034814e-03, 1.1228e+01, 6.7159e-01, + 1DIAGNOSTIC, 11, -9.429281508469e-01, 9.172547331510e-04, 1.1891e+01, 6.6330e-01, + 1DIAGNOSTIC, 12, -9.435616734680e-01, 6.628537627467e-04, 1.2540e+01, 6.4844e-01, + 1DIAGNOSTIC, 13, -9.441063251739e-01, 4.973994863689e-04, 1.3193e+01, 6.5341e-01, + 1DIAGNOSTIC, 14, -9.445961908888e-01, 3.839116294512e-04, 1.3852e+01, 6.5878e-01, + 1DIAGNOSTIC, 15, -9.450362819974e-01, 3.044939220893e-04, 1.4499e+01, 6.4673e-01, + 1DIAGNOSTIC, 16, -9.454374243962e-01, 2.476156274513e-04, 1.5155e+01, 6.5664e-01, + 1DIAGNOSTIC, 17, -9.458039829080e-01, 2.064907958166e-04, 1.5815e+01, 6.5983e-01, + 1DIAGNOSTIC, 18, -9.461408656325e-01, 1.751489792027e-04, 1.6458e+01, 6.4222e-01, + 1DIAGNOSTIC, 19, -9.464472205428e-01, 1.494732297817e-04, 1.7105e+01, 6.4783e-01, + 1DIAGNOSTIC, 20, -9.467301979689e-01, 1.282768411313e-04, 1.7746e+01, 6.4032e-01, + 1DIAGNOSTIC, 21, -9.469920674331e-01, 1.108603344642e-04, 1.8410e+01, 6.6408e-01, + 1DIAGNOSTIC, 22, -9.472344272883e-01, 9.671233618100e-05, 1.9085e+01, 6.7480e-01, + 1DIAGNOSTIC, 23, -9.474598681100e-01, 8.487730509820e-05, 1.9751e+01, 6.6690e-01, + 1DIAGNOSTIC, 24, -9.476690205390e-01, 7.489579011280e-05, 2.0418e+01, 6.6642e-01, + 1DIAGNOSTIC, 25, -9.478705408358e-01, 6.646307999610e-05, 2.1085e+01, 6.6735e-01, + 1DIAGNOSTIC, 26, -9.480501050485e-01, 5.920682021233e-05, 2.1724e+01, 6.3891e-01, + 1DIAGNOSTIC, 27, -9.482210992551e-01, 5.296398474628e-05, 2.2379e+01, 6.5516e-01, + 1DIAGNOSTIC, 28, -9.483727414695e-01, 4.748365924792e-05, 2.3050e+01, 6.7068e-01, + 1DIAGNOSTIC, 29, -9.485220737619e-01, 4.268867448498e-05, 2.3686e+01, 6.3586e-01, + 1DIAGNOSTIC, 30, -9.486721092039e-01, 3.858045653418e-05, 2.4322e+01, 6.3580e-01, + 1DIAGNOSTIC, 31, -9.488130047483e-01, 3.505297884983e-05, 2.4959e+01, 6.3691e-01, + 1DIAGNOSTIC, 32, -9.489462226900e-01, 3.201764521682e-05, 2.5608e+01, 6.4952e-01, + 1DIAGNOSTIC, 33, -9.490586481634e-01, 2.927317982201e-05, 2.6258e+01, 6.4971e-01, + 1DIAGNOSTIC, 34, -9.491701559972e-01, 2.681167543426e-05, 2.6893e+01, 6.3527e-01, + 1DIAGNOSTIC, 35, -9.492624274210e-01, 2.452823471845e-05, 2.7549e+01, 6.5595e-01, + 1DIAGNOSTIC, 36, -9.493628770869e-01, 2.243952667740e-05, 2.8204e+01, 6.5462e-01, + 1DIAGNOSTIC, 37, -9.494495200468e-01, 2.048361368922e-05, 2.8852e+01, 6.4816e-01, + 1DIAGNOSTIC, 38, -9.495405473498e-01, 1.866343792080e-05, 2.9495e+01, 6.4324e-01, + 1DIAGNOSTIC, 39, -9.496268359855e-01, 1.703400349676e-05, 3.0162e+01, 6.6685e-01, + 1DIAGNOSTIC, 40, -9.497000322982e-01, 1.559791177812e-05, 3.0794e+01, 6.3253e-01, + 1DIAGNOSTIC, 41, -9.497771790805e-01, 1.440145122137e-05, 3.1438e+01, 6.4330e-01, + 1DIAGNOSTIC, 42, -9.498533787989e-01, 1.344413495907e-05, 3.2098e+01, 6.6065e-01, + 1DIAGNOSTIC, 43, -9.499259765985e-01, 1.259555448721e-05, 3.2766e+01, 6.6806e-01, + 1DIAGNOSTIC, 44, -9.499944176054e-01, 1.186938525536e-05, 3.3428e+01, 6.6187e-01, + 1DIAGNOSTIC, 45, -9.500587081617e-01, 1.114275013202e-05, 3.4073e+01, 6.4474e-01, + 1DIAGNOSTIC, 46, -9.501097738204e-01, 1.042925922210e-05, 3.4727e+01, 6.5420e-01, + 1DIAGNOSTIC, 47, -9.501702553585e-01, 9.744193731578e-06, 3.5397e+01, 6.7015e-01, + 1DIAGNOSTIC, 48, -9.502264734415e-01, 9.128438297031e-06, 3.6067e+01, 6.6988e-01, + 1DIAGNOSTIC, 49, -9.502825012139e-01, 8.590171589103e-06, 3.6744e+01, 6.7717e-01, + 1DIAGNOSTIC, 50, -9.503355987662e-01, 8.062409708950e-06, 3.7413e+01, 6.6867e-01, + 1DIAGNOSTIC, 51, -9.503891330957e-01, 7.605212379393e-06, 3.8074e+01, 6.6092e-01, + 1DIAGNOSTIC, 52, -9.504366963630e-01, 7.202214985645e-06, 3.8746e+01, 6.7209e-01, + 1DIAGNOSTIC, 53, -9.504830849039e-01, 6.847932130242e-06, 3.9422e+01, 6.7607e-01, + 1DIAGNOSTIC, 54, -9.505208617174e-01, 6.490130292230e-06, 4.0394e+01, 9.7177e-01, + 1DIAGNOSTIC, 55, -9.505617927804e-01, 6.148998278225e-06, 4.1036e+01, 6.4252e-01, + 1DIAGNOSTIC, 56, -9.506035675399e-01, 5.775858442549e-06, 4.1677e+01, 6.4020e-01, + 1DIAGNOSTIC, 57, -9.506381844541e-01, 5.409821436594e-06, 4.2344e+01, 6.6715e-01, + 1DIAGNOSTIC, 58, -9.506748101217e-01, 5.065889717097e-06, 4.3015e+01, 6.7085e-01, + 1DIAGNOSTIC, 59, -9.507098879927e-01, 4.758147087711e-06, 4.3683e+01, 6.6789e-01, + 1DIAGNOSTIC, 60, -9.507474557860e-01, 4.502994962081e-06, 4.4338e+01, 6.5527e-01, + 1DIAGNOSTIC, 61, -9.507846723988e-01, 4.314946510729e-06, 4.4971e+01, 6.3297e-01, + 1DIAGNOSTIC, 62, -9.508203781605e-01, 4.165981238865e-06, 4.5618e+01, 6.4685e-01, + 1DIAGNOSTIC, 63, -9.508531605288e-01, 4.044108939619e-06, 4.6269e+01, 6.5171e-01, + 1DIAGNOSTIC, 64, -9.508865267920e-01, 3.915134336750e-06, 4.6942e+01, 6.7274e-01, + 1DIAGNOSTIC, 65, -9.509266527326e-01, 3.830609275505e-06, 4.7628e+01, 6.8591e-01, + 1DIAGNOSTIC, 66, -9.509584807685e-01, 3.756794738897e-06, 4.8619e+01, 9.9096e-01, + 1DIAGNOSTIC, 67, -9.509891926233e-01, 3.659118420308e-06, 4.9281e+01, 6.6197e-01, + 1DIAGNOSTIC, 68, -9.510282954437e-01, 3.589248502398e-06, 4.9913e+01, 6.3162e-01, + 1DIAGNOSTIC, 69, -9.510576520183e-01, 3.496142967508e-06, 5.0580e+01, 6.6788e-01, + 1DIAGNOSTIC, 70, -9.510884654505e-01, 3.402610360219e-06, 5.1260e+01, 6.7927e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.142190407230e-01, 1.797693134862e+308, 5.6859e+01, 5.5995e+00, + 1DIAGNOSTIC, 2, -9.177676375380e-01, 1.797693134862e+308, 6.2169e+01, 5.3100e+00, + 1DIAGNOSTIC, 3, -9.206482653704e-01, 1.797693134862e+308, 6.7499e+01, 5.3301e+00, + 1DIAGNOSTIC, 4, -9.233334033994e-01, 1.797693134862e+308, 7.2804e+01, 5.3051e+00, + 1DIAGNOSTIC, 5, -9.257613518698e-01, 1.797693134862e+308, 7.8145e+01, 5.3407e+00, + 1DIAGNOSTIC, 6, -9.279636401926e-01, 1.797693134862e+308, 8.3462e+01, 5.3169e+00, + 1DIAGNOSTIC, 7, -9.299660656544e-01, 1.797693134862e+308, 8.8797e+01, 5.3348e+00, + 1DIAGNOSTIC, 8, -9.315383956583e-01, 1.797693134862e+308, 9.4126e+01, 5.3289e+00, + 1DIAGNOSTIC, 9, -9.328756848869e-01, 1.797693134862e+308, 9.9475e+01, 5.3490e+00, + 1DIAGNOSTIC, 10, -9.340520047099e-01, 1.358145136726e-03, 1.0480e+02, 5.3217e+00, + 1DIAGNOSTIC, 11, -9.349934116236e-01, 1.080917976142e-03, 1.1015e+02, 5.3576e+00, + 1DIAGNOSTIC, 12, -9.359837844433e-01, 8.682712218186e-04, 1.1552e+02, 5.3684e+00, + 1DIAGNOSTIC, 13, -9.367621703911e-01, 6.955177601616e-04, 1.2093e+02, 5.4123e+00, + 1DIAGNOSTIC, 14, -9.374588501844e-01, 5.578008208325e-04, 1.2628e+02, 5.3405e+00, + 1DIAGNOSTIC, 15, -9.380896907529e-01, 4.495230710169e-04, 1.3164e+02, 5.3643e+00, + 1DIAGNOSTIC, 16, -9.386625114995e-01, 3.661692296015e-04, 1.3699e+02, 5.3510e+00, + 1DIAGNOSTIC, 17, -9.391865111635e-01, 3.040356040749e-04, 1.4235e+02, 5.3643e+00, + 1DIAGNOSTIC, 18, -9.396629229132e-01, 2.552627989109e-04, 1.4776e+02, 5.4072e+00, + 1DIAGNOSTIC, 19, -9.401025442456e-01, 2.163782791689e-04, 1.5313e+02, 5.3634e+00, + 1DIAGNOSTIC, 20, -9.405207671929e-01, 1.855396366808e-04, 1.5848e+02, 5.3563e+00, + 1DIAGNOSTIC, 21, -9.409064816381e-01, 1.594978930739e-04, 1.6387e+02, 5.3854e+00, + 1DIAGNOSTIC, 22, -9.412639847231e-01, 1.395543551407e-04, 1.6922e+02, 5.3530e+00, + 1DIAGNOSTIC, 23, -9.416028643603e-01, 1.230589961124e-04, 1.7458e+02, 5.3639e+00, + 1DIAGNOSTIC, 24, -9.419237119998e-01, 1.092966482058e-04, 1.7994e+02, 5.3551e+00, + 1DIAGNOSTIC, 25, -9.422225805136e-01, 9.768361008538e-05, 1.8534e+02, 5.4031e+00, + 1DIAGNOSTIC, 26, -9.425090712060e-01, 8.783623893623e-05, 1.9070e+02, 5.3626e+00, + 1DIAGNOSTIC, 27, -9.427756997103e-01, 7.936550322608e-05, 1.9609e+02, 5.3852e+00, + 1DIAGNOSTIC, 28, -9.430315150355e-01, 7.198700211753e-05, 2.0145e+02, 5.3599e+00, + 1DIAGNOSTIC, 29, -9.432745270528e-01, 6.549490320092e-05, 2.0681e+02, 5.3586e+00, + 1DIAGNOSTIC, 30, -9.434926442594e-01, 5.971517208165e-05, 2.1216e+02, 5.3514e+00, + 1DIAGNOSTIC, 31, -9.436925710900e-01, 5.443047451875e-05, 2.1755e+02, 5.3885e+00, + 1DIAGNOSTIC, 32, -9.438779572473e-01, 4.950879131489e-05, 2.2293e+02, 5.3841e+00, + 1DIAGNOSTIC, 33, -9.440528013816e-01, 4.495406127666e-05, 2.2830e+02, 5.3715e+00, + 1DIAGNOSTIC, 34, -9.442183635085e-01, 4.078165646516e-05, 2.3366e+02, 5.3562e+00, + 1DIAGNOSTIC, 35, -9.443725392517e-01, 3.694236404860e-05, 2.3907e+02, 5.4114e+00, + 1DIAGNOSTIC, 36, -9.445214954452e-01, 3.351945004047e-05, 2.4442e+02, 5.3520e+00, + 1DIAGNOSTIC, 37, -9.446604229364e-01, 3.046089329752e-05, 2.4978e+02, 5.3564e+00, + 1DIAGNOSTIC, 38, -9.447964895373e-01, 2.783352298660e-05, 2.5516e+02, 5.3809e+00, + 1DIAGNOSTIC, 39, -9.449259182371e-01, 2.562909076763e-05, 2.6053e+02, 5.3647e+00, + 1DIAGNOSTIC, 40, -9.450506128627e-01, 2.373588640707e-05, 2.6587e+02, 5.3454e+00, + 1DIAGNOSTIC, 41, -9.451695436945e-01, 2.207529728215e-05, 2.7122e+02, 5.3515e+00, + 1DIAGNOSTIC, 42, -9.452832035437e-01, 2.059199389874e-05, 2.7659e+02, 5.3692e+00, + 1DIAGNOSTIC, 43, -9.453964743041e-01, 1.928874089633e-05, 2.8196e+02, 5.3652e+00, + 1DIAGNOSTIC, 44, -9.455056536097e-01, 1.814022235947e-05, 2.8731e+02, 5.3503e+00, + 1DIAGNOSTIC, 45, -9.456177659397e-01, 1.714767119305e-05, 2.9268e+02, 5.3776e+00, + 1DIAGNOSTIC, 46, -9.457281125592e-01, 1.631190445487e-05, 2.9804e+02, 5.3533e+00, + 1DIAGNOSTIC, 47, -9.458382931393e-01, 1.560160054394e-05, 3.0343e+02, 5.3896e+00, + 1DIAGNOSTIC, 48, -9.459440149159e-01, 1.499796530305e-05, 3.0876e+02, 5.3320e+00, + 1DIAGNOSTIC, 49, -9.460482596911e-01, 1.447161697340e-05, 3.1414e+02, 5.3775e+00, + 1DIAGNOSTIC, 50, -9.461469778788e-01, 1.397702454258e-05, 3.1947e+02, 5.3377e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.176579042662e-01, 1.797693134862e+308, 3.6379e+02, 4.4310e+01, + 1DIAGNOSTIC, 2, -9.184240824007e-01, 1.797693134862e+308, 4.0736e+02, 4.3571e+01, + 1DIAGNOSTIC, 3, -9.194587242532e-01, 1.797693134862e+308, 4.5103e+02, 4.3677e+01, + 1DIAGNOSTIC, 4, -9.206604556136e-01, 1.797693134862e+308, 4.9472e+02, 4.3684e+01, + 1DIAGNOSTIC, 5, -9.218723169273e-01, 1.797693134862e+308, 5.3831e+02, 4.3596e+01, + 1DIAGNOSTIC, 6, -9.232255618453e-01, 1.797693134862e+308, 5.8176e+02, 4.3450e+01, + 1DIAGNOSTIC, 7, -9.246471291985e-01, 1.797693134862e+308, 6.2516e+02, 4.3398e+01, + 1DIAGNOSTIC, 8, -9.258925123770e-01, 1.797693134862e+308, 6.6858e+02, 4.3418e+01, + 1DIAGNOSTIC, 9, -9.270436873982e-01, 1.797693134862e+308, 7.1218e+02, 4.3606e+01, + 1DIAGNOSTIC, 10, -9.280381600081e-01, 7.582175011851e-04, 7.5574e+02, 4.3551e+01, + 1DIAGNOSTIC, 11, -9.289244023589e-01, 6.910079157288e-04, 7.9909e+02, 4.3355e+01, + 1DIAGNOSTIC, 12, -9.297294489369e-01, 6.130272943913e-04, 8.4269e+02, 4.3601e+01, + 1DIAGNOSTIC, 13, -9.304652358120e-01, 5.332941301047e-04, 8.8623e+02, 4.3542e+01, + 1DIAGNOSTIC, 14, -9.310779878106e-01, 4.562016104282e-04, 9.3005e+02, 4.3814e+01, + 1DIAGNOSTIC, 15, -9.316677440661e-01, 3.844735148763e-04, 9.7402e+02, 4.3975e+01, + 1DIAGNOSTIC, 16, -9.321264817190e-01, 3.209824465247e-04, 1.0177e+03, 4.3713e+01, + 1DIAGNOSTIC, 17, -9.325548648729e-01, 2.686606328942e-04, 1.0616e+03, 4.3821e+01, + 1DIAGNOSTIC, 18, -9.329656011094e-01, 2.254093852746e-04, 1.1054e+03, 4.3870e+01, + 1DIAGNOSTIC, 19, -9.333655321450e-01, 1.907465125234e-04, 1.1493e+03, 4.3825e+01, + 1DIAGNOSTIC, 20, -9.337532507589e-01, 1.629284908337e-04, 1.1932e+03, 4.3914e+01, + Elapsed time (stage 2): 1194 + + +Total elapsed time: 1247 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:04:52 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:04:52 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:04:55 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:04:59 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:02 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:03 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7442 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:03 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:06 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:06 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7618 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:06 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:09 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:09 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7752 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:10 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7758 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:10 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:58 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:00 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:00 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:01 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:02 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:04 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:04 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:05 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:06 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:09 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:09 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:09 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:18 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:29 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC010 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:30 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC010 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:30 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC010 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:30 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 10496 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:32 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:32 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 10578 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:34 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:34 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC010_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 72.367 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/logs/proc_func_19-03-2024-27513.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:07:36 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC010 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/QC/sub-PNC010_ses-02_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC010* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 72.433 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC010_ses-02 +========================reprocessing without filter=================== +sub-PNC010_ses-03 +/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found + + +micapipe -sub PNC010 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica + + +------------------------------------------------------------- + MICA pipeline - (Version v0.2.3 'Northern flicker') + Subject: PNC010 Session: ses-03 +------------------------------------------------------------- + Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt + +[ INFO ]..... Inputs:  + Topup Config : DEFAULT + ICA fix training : DEFAULT + Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold + Phase scan : DEFAULT + Reverse Phase : DEFAULT + Perform NSR : 0 + Perform GSR : 0 + No FIX : 0 + Longitudinal ses : FALSE + Drop TR : FALSE + Surface : fastsurfer + +[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  +/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz + +[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  + +[ WARNING ]..... Subject PNC010 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  + +[ WARNING ]..... Subject PNC010 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  + +[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  + +[ INFO ]..... ICA-FIX pipeline will be run!  + +[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  + +[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  + + +------------------------------------------------------------- + functional MRI processing + micapipe v0.2.3 'Northern flicker', LOCAL-MICA +------------------------------------------------------------- + +[ INFO ]..... MICA pipe - Software versions  + MRtrix3..... 3.0.1-26-g0f28beae + /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo + FSL......... 6.0 + /data_/mica1/01_programs/fsl-6-0-3 + ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') + /data/mica1/01_programs/afni-20.2.06/3dresample + ANTS........  2.3.4.dev187-gb37e8 + /data/mica1/01_programs/ants-2.3.4/bin + WorkBench... 1.4.2 + /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command + FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 + /data/mica1/01_programs/freesurfer-7.3.2 + fix......... /data_/mica1/01_programs/fix/fix + /data_/mica1/01_programs/fix + python...... 3.9.13 + /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python + R........... 4.3.1 + /usr/bin/R + conda....... conda 4.10.3 + /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda + +[ INFO ]..... Variables for functional processing  + T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w.nii.gz + T1 surface :  + mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz + mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.json + mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz + mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.json + mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz + mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.json + Main phase scan : file not found + Main reverse phase : file not found + TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf + ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData + Saving temporal dir: TRUE + Parallel processing : 10 threads + proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold + tagMRI: me_task-rest_bold + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:07:54 EDT 2024: +COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03  + +[ INFO ]..... Processing mainScan scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:07:54 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:09:59 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:12:00 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reoMean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:12:14 EDT 2024: +COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz  +++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: RW Cox +++ Coarse del was 10, replaced with 7 +++ Max displacement in automask = 0.44 (mm) at sub-brick 12 +++ Max delta displ in automask = 0.42 (mm) at sub-brick 208 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:24:26 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mcMean.nii.gz  + +[ INFO ]..... Processing mainScan2 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:24:45 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:26:45 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_reo.nii.gz  + +[ INFO ]..... Processing mainScan3 scan  + func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:28:45 EDT 2024: +COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz  +** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 + Warnings of this type will be muted for this session. + Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. +*+ WARNING: If you are performing spatial transformations on an oblique dset, + such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz, + or viewing/combining it with volumes of differing obliquity, + you should consider running: + 3dWarp -deoblique + on this and other oblique datasets in the same session. + See 3dWarp -help for details. +++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:30:45 EDT 2024: +COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_reo.nii.gz  + +[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  + +[ INFO ]..... Apply motion correction to echos  +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.820 -2.741 2.733 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.6 +++ ########################################################### +++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] +++ Authored by: Zhark the Registrator +++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_reo.nii.gz +++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mcMean.nii.gz +++ You might want to use '-master' when using '-1D*_apply' +++ Loading datasets into memory + + -cmass x y z shifts = -0.943 -5.246 4.649 + + shift search range is +/- = 71.295 71.295 45.133 +++ master dataset for output = base +++ OpenMP thread count = 10 +++ ========== Applying transformation to 210 sub-bricks ========== +volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 +++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_mc.nii.gz +++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 +++ ########################################################### + Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz + EchoNumber : 1 2 3 + EchoTime : 0.0108 0.0273 0.0438 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:35:18 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:35:46 EDT 2024: +COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + MI histogram bins: 32 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x558af4684a50) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1706 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1489 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [111.102, 65.3677, -109.238] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558af44fb730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1486 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558af469b350 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x558af468b600) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1707 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1704 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [78.8093, 126.536, -121.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558af468de40) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1701 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558af4e97f50 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x558af4e96270) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2138 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1921 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [118, 118, 75] + Spacing: [1.89831, 1.89831, 1.9] + Origin: [111.102, 65.3677, -109.238] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.9 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526316 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558af468a640) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1918 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558af59c21c0 + Container manages memory: true + Size: 1044300 + Capacity: 1044300 + + Moving image = Image (0x558af4e95a00) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2139 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2136 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [84, 128, 136] + Spacing: [1.89831, 1.89831, 1.89831] + Origin: [78.8093, 126.536, -121.5] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1.89831 0 0 +0 -1.89831 0 +0 0 1.89831 + + PointToIndexMatrix: +-0.526786 0 0 +0 -0.526786 0 +0 0 0.526786 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558af4691390) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2133 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x558af61bc300 + Container manages memory: true + Size: 1462272 + Capacity: 1462272 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x0 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.333586418182e-01, 1.797693134862e+308, 4.2823e-02, 4.2822e-02, + 2DIAGNOSTIC, 2, -7.357801091179e-01, 1.797693134862e+308, 4.4213e-02, 1.3900e-03, + 2DIAGNOSTIC, 3, -7.389389933113e-01, 1.797693134862e+308, 4.5536e-02, 1.3230e-03, + 2DIAGNOSTIC, 4, -7.441255674915e-01, 1.797693134862e+308, 4.6777e-02, 1.2410e-03, + 2DIAGNOSTIC, 5, -7.514125021584e-01, 1.797693134862e+308, 4.8049e-02, 1.2720e-03, + 2DIAGNOSTIC, 6, -7.557981218207e-01, 1.797693134862e+308, 4.9320e-02, 1.2710e-03, + 2DIAGNOSTIC, 7, -7.873560989734e-01, 1.797693134862e+308, 5.0827e-02, 1.5070e-03, + 2DIAGNOSTIC, 8, -8.036067449418e-01, 1.797693134862e+308, 5.2093e-02, 1.2660e-03, + 2DIAGNOSTIC, 9, -8.233852470156e-01, 1.797693134862e+308, 5.3618e-02, 1.5249e-03, + 2DIAGNOSTIC, 10, -8.488978352984e-01, 9.512076629325e-03, 5.5314e-02, 1.6959e-03, + 2DIAGNOSTIC, 11, -8.532607656179e-01, 9.904337041314e-03, 5.7005e-02, 1.6909e-03, + 2DIAGNOSTIC, 12, -8.447775637689e-01, 9.169875508955e-03, 5.8891e-02, 1.8859e-03, + 2DIAGNOSTIC, 13, -8.506160825919e-01, 7.985007414477e-03, 6.0793e-02, 1.9021e-03, + 2DIAGNOSTIC, 14, -8.514526478051e-01, 6.405292412170e-03, 6.2306e-02, 1.5130e-03, + 2DIAGNOSTIC, 15, -8.516951939640e-01, 4.644881639998e-03, 6.3798e-02, 1.4920e-03, + 2DIAGNOSTIC, 16, -8.518316361567e-01, 2.785037752071e-03, 6.5717e-02, 1.9190e-03, + 2DIAGNOSTIC, 17, -8.520227135603e-01, 1.567614476731e-03, 6.7241e-02, 1.5240e-03, + 2DIAGNOSTIC, 18, -8.522463707404e-01, 6.659781650047e-04, 6.8927e-02, 1.6861e-03, + 2DIAGNOSTIC, 19, -8.533160916689e-01, 1.722408522095e-04, 7.1336e-02, 2.4090e-03, + 2DIAGNOSTIC, 20, -8.535990146262e-01, 1.632292777034e-04, 7.3093e-02, 1.7569e-03, + 2DIAGNOSTIC, 21, -8.537937244285e-01, 2.214098926346e-04, 7.4543e-02, 1.4501e-03, + 2DIAGNOSTIC, 22, -8.539289031896e-01, 1.190997406372e-04, 7.6049e-02, 1.5061e-03, + 2DIAGNOSTIC, 23, -8.540572851877e-01, 1.049464483496e-04, 7.7969e-02, 1.9200e-03, + 2DIAGNOSTIC, 24, -8.541221331134e-01, 9.507049101925e-05, 7.9410e-02, 1.4410e-03, + 2DIAGNOSTIC, 25, -8.541687291600e-01, 8.116417217346e-05, 8.1081e-02, 1.6711e-03, + 2DIAGNOSTIC, 26, -8.542364989277e-01, 6.374045828319e-05, 8.2744e-02, 1.6630e-03, + 2DIAGNOSTIC, 27, -8.543763233053e-01, 4.610730862960e-05, 8.4503e-02, 1.7591e-03, + 2DIAGNOSTIC, 28, -8.543974554139e-01, 2.820539551963e-05, 8.5998e-02, 1.4951e-03, + 2DIAGNOSTIC, 29, -8.544313826901e-01, 2.210609721084e-05, 8.7522e-02, 1.5240e-03, + 2DIAGNOSTIC, 30, -8.545047951314e-01, 1.851574820742e-05, 9.0130e-02, 2.6081e-03, + 2DIAGNOSTIC, 31, -8.545151722543e-01, 1.574209282534e-05, 9.1659e-02, 1.5290e-03, + 2DIAGNOSTIC, 32, -8.545200763035e-01, 1.322103089851e-05, 9.3278e-02, 1.6191e-03, + 2DIAGNOSTIC, 33, -8.545259889780e-01, 1.109764447714e-05, 9.4782e-02, 1.5042e-03, + 2DIAGNOSTIC, 34, -8.545369084273e-01, 8.917290848759e-06, 9.6281e-02, 1.4989e-03, + 2DIAGNOSTIC, 35, -8.545558638981e-01, 6.736929298777e-06, 9.7727e-02, 1.4460e-03, + 2DIAGNOSTIC, 36, -8.546310185352e-01, 5.450255181363e-06, 9.9647e-02, 1.9200e-03, + 2DIAGNOSTIC, 37, -8.546547673055e-01, 5.306288648494e-06, 1.0184e-01, 2.1942e-03, + 2DIAGNOSTIC, 38, -8.546576652858e-01, 4.969331218584e-06, 1.0368e-01, 1.8351e-03, + 2DIAGNOSTIC, 39, -8.546617029717e-01, 4.584457172524e-06, 1.0551e-01, 1.8351e-03, + 2DIAGNOSTIC, 40, -8.546631552470e-01, 4.496573120315e-06, 1.0729e-01, 1.7769e-03, + 2DIAGNOSTIC, 41, -8.546656419907e-01, 4.158494163901e-06, 1.0910e-01, 1.8110e-03, + 2DIAGNOSTIC, 42, -8.546690720619e-01, 3.580248928395e-06, 1.1094e-01, 1.8439e-03, + 2DIAGNOSTIC, 43, -8.546737007759e-01, 2.852724419296e-06, 1.1238e-01, 1.4410e-03, + 2DIAGNOSTIC, 44, -8.546919604457e-01, 2.189314622283e-06, 1.1609e-01, 3.7031e-03, + 2DIAGNOSTIC, 45, -8.546919876455e-01, 1.543760152902e-06, 1.1822e-01, 2.1300e-03, + 2DIAGNOSTIC, 46, -8.546919888397e-01, 1.401333530000e-06, 1.2029e-01, 2.0730e-03, + 2DIAGNOSTIC, 47, -8.546919889053e-01, 1.371839149555e-06, 1.2259e-01, 2.2969e-03, + 2DIAGNOSTIC, 48, -8.546919889085e-01, 1.297455012143e-06, 1.2604e-01, 3.4480e-03, + 2DIAGNOSTIC, 49, -8.546919889088e-01, 1.192768406051e-06, 1.2961e-01, 3.5710e-03, + 2DIAGNOSTIC, 50, -8.546919889088e-01, 1.051274793804e-06, 1.3379e-01, 4.1800e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.012040602850e-01, 1.797693134862e+308, 1.8137e-01, 4.7579e-02, + 2DIAGNOSTIC, 2, -5.013987638942e-01, 1.797693134862e+308, 1.8422e-01, 2.8579e-03, + 2DIAGNOSTIC, 3, -5.033077474768e-01, 1.797693134862e+308, 1.8726e-01, 3.0410e-03, + 2DIAGNOSTIC, 4, -5.053594400636e-01, 1.797693134862e+308, 1.8968e-01, 2.4190e-03, + 2DIAGNOSTIC, 5, -5.076363973700e-01, 1.797693134862e+308, 1.9197e-01, 2.2850e-03, + 2DIAGNOSTIC, 6, -5.113437829793e-01, 1.797693134862e+308, 1.9445e-01, 2.4819e-03, + 2DIAGNOSTIC, 7, -5.144162520706e-01, 1.797693134862e+308, 1.9681e-01, 2.3620e-03, + 2DIAGNOSTIC, 8, -5.157670395477e-01, 1.797693134862e+308, 1.9893e-01, 2.1210e-03, + 2DIAGNOSTIC, 9, -5.206768601223e-01, 1.797693134862e+308, 2.0105e-01, 2.1169e-03, + 2DIAGNOSTIC, 10, -5.246868999157e-01, 3.004161658408e-03, 2.0373e-01, 2.6770e-03, + 2DIAGNOSTIC, 11, -5.323625485108e-01, 3.264237412412e-03, 2.0758e-01, 3.8490e-03, + 2DIAGNOSTIC, 12, -5.338777649788e-01, 3.258777333086e-03, 2.1011e-01, 2.5320e-03, + 2DIAGNOSTIC, 13, -5.350113466316e-01, 3.093321682740e-03, 2.1236e-01, 2.2550e-03, + 2DIAGNOSTIC, 14, -5.357694832045e-01, 2.783767581758e-03, 2.1472e-01, 2.3592e-03, + 2DIAGNOSTIC, 15, -5.365176443783e-01, 2.368511775228e-03, 2.1698e-01, 2.2531e-03, + 2DIAGNOSTIC, 16, -5.377081627559e-01, 1.952783526559e-03, 2.1947e-01, 2.4948e-03, + 2DIAGNOSTIC, 17, -5.413755817812e-01, 1.624439095736e-03, 2.2198e-01, 2.5129e-03, + 2DIAGNOSTIC, 18, -5.530334183736e-01, 1.573495220352e-03, 2.2445e-01, 2.4700e-03, + 2DIAGNOSTIC, 19, -5.632398227642e-01, 1.804098871369e-03, 2.2660e-01, 2.1479e-03, + 2DIAGNOSTIC, 20, -5.734835801571e-01, 2.217482326438e-03, 2.2962e-01, 3.0229e-03, + 2DIAGNOSTIC, 21, -5.811267129927e-01, 2.771353516163e-03, 2.3295e-01, 3.3231e-03, + 2DIAGNOSTIC, 22, -5.815351131554e-01, 3.058135772444e-03, 2.3515e-01, 2.2039e-03, + 2DIAGNOSTIC, 23, -5.818617408460e-01, 3.066748087492e-03, 2.3762e-01, 2.4700e-03, + 2DIAGNOSTIC, 24, -5.821194347303e-01, 2.808869646747e-03, 2.3979e-01, 2.1710e-03, + 2DIAGNOSTIC, 25, -5.830650355394e-01, 2.345407166193e-03, 2.4253e-01, 2.7399e-03, + 2DIAGNOSTIC, 26, -5.870122058333e-01, 1.804448925255e-03, 2.4508e-01, 2.5470e-03, + 2DIAGNOSTIC, 27, -5.885376017260e-01, 1.234869574728e-03, 2.4734e-01, 2.2602e-03, + 2DIAGNOSTIC, 28, -5.893291685298e-01, 8.251150787405e-04, 2.4989e-01, 2.5511e-03, + 2DIAGNOSTIC, 29, -5.896440730570e-01, 5.548315808983e-04, 2.5247e-01, 2.5792e-03, + 2DIAGNOSTIC, 30, -5.900556595247e-01, 4.326631215750e-04, 2.5503e-01, 2.5611e-03, + 2DIAGNOSTIC, 31, -5.929042470206e-01, 4.523919935640e-04, 2.5754e-01, 2.5072e-03, + 2DIAGNOSTIC, 32, -5.928055726682e-01, 4.314346006335e-04, 2.6094e-01, 3.4039e-03, + 2DIAGNOSTIC, 33, -5.931574993938e-01, 3.831575203172e-04, 2.6318e-01, 2.2359e-03, + 2DIAGNOSTIC, 34, -5.944972503418e-01, 3.269628968927e-04, 2.6573e-01, 2.5530e-03, + 2DIAGNOSTIC, 35, -5.944221689630e-01, 2.540843097931e-04, 2.6813e-01, 2.4030e-03, + 2DIAGNOSTIC, 36, -5.949275765887e-01, 2.241316656831e-04, 2.7080e-01, 2.6698e-03, + 2DIAGNOSTIC, 37, -5.950441246292e-01, 1.971869609710e-04, 2.7323e-01, 2.4300e-03, + 2DIAGNOSTIC, 38, -5.947601373095e-01, 1.603690719725e-04, 2.7565e-01, 2.4149e-03, + 2DIAGNOSTIC, 39, -5.950988142427e-01, 1.191276546447e-04, 2.7798e-01, 2.3279e-03, + 2DIAGNOSTIC, 40, -5.953957512436e-01, 7.663821082384e-05, 2.8050e-01, 2.5282e-03, + 2DIAGNOSTIC, 41, -5.959226577235e-01, 7.108848167938e-05, 2.8335e-01, 2.8481e-03, + 2DIAGNOSTIC, 42, -5.959289675674e-01, 5.795823502664e-05, 2.9235e-01, 9.0001e-03, + 2DIAGNOSTIC, 43, -5.959289655867e-01, 4.396827395171e-05, 2.9460e-01, 2.2430e-03, + 2DIAGNOSTIC, 44, -5.959289823974e-01, 4.207825232056e-05, 2.9694e-01, 2.3420e-03, + 2DIAGNOSTIC, 45, -5.959290108165e-01, 3.519856075028e-05, 2.9926e-01, 2.3220e-03, + 2DIAGNOSTIC, 46, -5.959290588505e-01, 3.076142020720e-05, 3.0158e-01, 2.3248e-03, + 2DIAGNOSTIC, 47, -5.959291400122e-01, 2.506295919932e-05, 3.0391e-01, 2.3251e-03, + 2DIAGNOSTIC, 48, -5.959292770748e-01, 1.433581499800e-05, 3.0617e-01, 2.2609e-03, + 2DIAGNOSTIC, 49, -5.959295083303e-01, 6.219940275349e-06, 3.0839e-01, 2.2190e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.208515671752e-01, 1.797693134862e+308, 3.7037e-01, 6.1984e-02, + 2DIAGNOSTIC, 2, -4.214306264716e-01, 1.797693134862e+308, 3.8142e-01, 1.1050e-02, + 2DIAGNOSTIC, 3, -4.222654678919e-01, 1.797693134862e+308, 3.9207e-01, 1.0642e-02, + 2DIAGNOSTIC, 4, -4.234670159425e-01, 1.797693134862e+308, 4.0268e-01, 1.0610e-02, + 2DIAGNOSTIC, 5, -4.265311016348e-01, 1.797693134862e+308, 4.1336e-01, 1.0687e-02, + 2DIAGNOSTIC, 6, -4.329298863740e-01, 1.797693134862e+308, 4.2385e-01, 1.0491e-02, + 2DIAGNOSTIC, 7, -4.369456944792e-01, 1.797693134862e+308, 4.3444e-01, 1.0589e-02, + 2DIAGNOSTIC, 8, -4.416181355362e-01, 1.797693134862e+308, 4.4500e-01, 1.0560e-02, + 2DIAGNOSTIC, 9, -4.464724626361e-01, 1.797693134862e+308, 4.5547e-01, 1.0472e-02, + 2DIAGNOSTIC, 10, -4.605399191472e-01, 5.414572018322e-03, 4.6920e-01, 1.3730e-02, + 2DIAGNOSTIC, 11, -4.773044001416e-01, 6.689193354880e-03, 4.8429e-01, 1.5084e-02, + 2DIAGNOSTIC, 12, -4.794452495230e-01, 7.265867326358e-03, 4.9800e-01, 1.3716e-02, + 2DIAGNOSTIC, 13, -4.795990062193e-01, 7.161770955656e-03, 5.0890e-01, 1.0894e-02, + 2DIAGNOSTIC, 14, -4.796767203375e-01, 6.494183199447e-03, 5.2123e-01, 1.2331e-02, + 2DIAGNOSTIC, 15, -4.796973043140e-01, 5.447837785989e-03, 5.3320e-01, 1.1971e-02, + 2DIAGNOSTIC, 16, -4.796848877473e-01, 4.282708785704e-03, 5.4332e-01, 1.0115e-02, + 2DIAGNOSTIC, 17, -4.796956689570e-01, 3.021311125643e-03, 5.5350e-01, 1.0189e-02, + 2DIAGNOSTIC, 18, -4.797616218114e-01, 1.805137059414e-03, 5.6502e-01, 1.1516e-02, + 2DIAGNOSTIC, 19, -4.798590827792e-01, 7.144423426984e-04, 5.7653e-01, 1.1515e-02, + 2DIAGNOSTIC, 20, -4.801056972716e-01, 1.039169261285e-04, 5.8962e-01, 1.3081e-02, + 2DIAGNOSTIC, 21, -4.803022550206e-01, 4.475951609809e-05, 6.0776e-01, 1.8148e-02, + 2DIAGNOSTIC, 22, -4.803759302553e-01, 4.947082271275e-05, 6.1872e-01, 1.0957e-02, + 2DIAGNOSTIC, 23, -4.804131845930e-01, 5.442794963854e-05, 6.3107e-01, 1.2353e-02, + 2DIAGNOSTIC, 24, -4.805490249667e-01, 5.947975534702e-05, 6.4453e-01, 1.3454e-02, + 2DIAGNOSTIC, 25, -4.805760631823e-01, 5.969186721953e-05, 6.5691e-01, 1.2378e-02, + 2DIAGNOSTIC, 26, -4.805815720708e-01, 5.421979842129e-05, 6.6731e-01, 1.0405e-02, + 2DIAGNOSTIC, 27, -4.805839002975e-01, 4.456841946220e-05, 6.7712e-01, 9.8100e-03, + 2DIAGNOSTIC, 28, -4.805875506961e-01, 3.312722063427e-05, 6.8696e-01, 9.8391e-03, + 2DIAGNOSTIC, 29, -4.805908796714e-01, 2.149225684397e-05, 6.9658e-01, 9.6231e-03, + 2DIAGNOSTIC, 30, -4.805875022389e-01, 1.359424996018e-05, 7.0792e-01, 1.1336e-02, + 2DIAGNOSTIC, 31, -4.805843250960e-01, 8.865141888276e-06, 7.2157e-01, 1.3654e-02, + 2DIAGNOSTIC, 32, -4.805908041350e-01, 5.251811562669e-06, 7.4213e-01, 2.0555e-02, + 2DIAGNOSTIC, 33, -4.805966881547e-01, 2.190400107321e-06, 7.5278e-01, 1.0654e-02, + 2DIAGNOSTIC, 34, -4.805799295986e-01, 1.320107103651e-06, 7.6354e-01, 1.0761e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.024556395944e-01, 1.797693134862e+308, 9.7179e-01, 2.0824e-01, + Elapsed time (stage 0): 9.9946e-01 + + +Stage 1 + iterations = 1000x500x250x0 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.964712799383e-01, 1.797693134862e+308, 4.6925e-02, 4.6924e-02, + 2DIAGNOSTIC, 2, -8.984089582394e-01, 1.797693134862e+308, 4.8034e-02, 1.1089e-03, + 2DIAGNOSTIC, 3, -9.020166238957e-01, 1.797693134862e+308, 4.9317e-02, 1.2829e-03, + 2DIAGNOSTIC, 4, -9.049130241656e-01, 1.797693134862e+308, 5.0425e-02, 1.1079e-03, + 2DIAGNOSTIC, 5, -9.072929489355e-01, 1.797693134862e+308, 5.1539e-02, 1.1141e-03, + 2DIAGNOSTIC, 6, -9.110282159627e-01, 1.797693134862e+308, 5.2853e-02, 1.3139e-03, + 2DIAGNOSTIC, 7, -9.117538742682e-01, 1.797693134862e+308, 5.4080e-02, 1.2269e-03, + 2DIAGNOSTIC, 8, -9.158681296195e-01, 1.797693134862e+308, 5.5162e-02, 1.0819e-03, + 2DIAGNOSTIC, 9, -9.225876659245e-01, 1.797693134862e+308, 5.6244e-02, 1.0819e-03, + 2DIAGNOSTIC, 10, -9.296464168934e-01, 2.121747248504e-03, 5.7553e-02, 1.3089e-03, + 2DIAGNOSTIC, 11, -9.384780983630e-01, 2.288780317077e-03, 5.8891e-02, 1.3380e-03, + 2DIAGNOSTIC, 12, -9.525426785742e-01, 2.630362871223e-03, 6.1554e-02, 2.6631e-03, + 2DIAGNOSTIC, 13, -9.518904118056e-01, 2.744948846490e-03, 6.3100e-02, 1.5459e-03, + 2DIAGNOSTIC, 14, -9.532562909063e-01, 2.691467160916e-03, 6.4423e-02, 1.3230e-03, + 2DIAGNOSTIC, 15, -9.557447015774e-01, 2.499325031313e-03, 6.5776e-02, 1.3530e-03, + 2DIAGNOSTIC, 16, -9.602050085530e-01, 2.257128726734e-03, 6.7112e-02, 1.3368e-03, + 2DIAGNOSTIC, 17, -9.697674328599e-01, 2.016650062071e-03, 6.8413e-02, 1.3001e-03, + 2DIAGNOSTIC, 18, -9.816744917997e-01, 1.885604735592e-03, 6.9752e-02, 1.3399e-03, + 2DIAGNOSTIC, 19, -9.950216987883e-01, 1.914147542960e-03, 7.1267e-02, 1.5149e-03, + 2DIAGNOSTIC, 20, -1.002568347556e+00, 1.979421620084e-03, 7.2777e-02, 1.5099e-03, + 2DIAGNOSTIC, 21, -1.015251523182e+00, 2.157105397889e-03, 7.5090e-02, 2.3129e-03, + 2DIAGNOSTIC, 22, -1.016346485516e+00, 2.321238876314e-03, 7.6413e-02, 1.3230e-03, + 2DIAGNOSTIC, 23, -1.018864871706e+00, 2.278074696016e-03, 7.7717e-02, 1.3041e-03, + 2DIAGNOSTIC, 24, -1.021971498925e+00, 2.081257905200e-03, 7.9232e-02, 1.5152e-03, + 2DIAGNOSTIC, 25, -1.023352302377e+00, 1.751570284962e-03, 8.0555e-02, 1.3230e-03, + 2DIAGNOSTIC, 26, -1.024040919630e+00, 1.342252020854e-03, 8.1874e-02, 1.3189e-03, + 2DIAGNOSTIC, 27, -1.026772195686e+00, 9.731501194720e-04, 8.3263e-02, 1.3890e-03, + 2DIAGNOSTIC, 28, -1.031036429154e+00, 7.092608343085e-04, 8.4772e-02, 1.5090e-03, + 2DIAGNOSTIC, 29, -1.032371790597e+00, 5.453537299116e-04, 8.6334e-02, 1.5621e-03, + 2DIAGNOSTIC, 30, -1.034652633195e+00, 4.352110642760e-04, 8.7666e-02, 1.3311e-03, + 2DIAGNOSTIC, 31, -1.034963677592e+00, 4.149971129881e-04, 8.9391e-02, 1.7250e-03, + 2DIAGNOSTIC, 32, -1.038013156679e+00, 3.945210972437e-04, 9.1347e-02, 1.9560e-03, + 2DIAGNOSTIC, 33, -1.038084783248e+00, 3.593218898758e-04, 9.2839e-02, 1.4930e-03, + 2DIAGNOSTIC, 34, -1.039217304650e+00, 3.287547578847e-04, 9.4414e-02, 1.5750e-03, + 2DIAGNOSTIC, 35, -1.039876627631e+00, 2.863781837396e-04, 9.5721e-02, 1.3061e-03, + 2DIAGNOSTIC, 36, -1.039490799237e+00, 2.215757252834e-04, 9.7023e-02, 1.3020e-03, + 2DIAGNOSTIC, 37, -1.040258266555e+00, 1.662709968603e-04, 9.8541e-02, 1.5190e-03, + 2DIAGNOSTIC, 38, -1.040865204699e+00, 1.351306855947e-04, 9.9961e-02, 1.4198e-03, + 2DIAGNOSTIC, 39, -1.040569556459e+00, 1.002533096479e-04, 1.0131e-01, 1.3521e-03, + 2DIAGNOSTIC, 40, -1.041521201025e+00, 8.138254553894e-05, 1.0284e-01, 1.5240e-03, + 2DIAGNOSTIC, 41, -1.042192830750e+00, 6.209582591153e-05, 1.0496e-01, 2.1219e-03, + 2DIAGNOSTIC, 42, -1.041335033215e+00, 5.292478773078e-05, 1.0652e-01, 1.5559e-03, + 2DIAGNOSTIC, 43, -1.041429879273e+00, 4.037697568961e-05, 1.0786e-01, 1.3421e-03, + 2DIAGNOSTIC, 44, -1.042664892729e+00, 4.000079988189e-05, 1.0924e-01, 1.3869e-03, + 2DIAGNOSTIC, 45, -1.043004277317e+00, 4.203060504171e-05, 1.1098e-01, 1.7378e-03, + 2DIAGNOSTIC, 46, -1.043150453060e+00, 3.837691454462e-05, 1.1269e-01, 1.7130e-03, + 2DIAGNOSTIC, 47, -1.043195381088e+00, 3.638979677947e-05, 1.1428e-01, 1.5869e-03, + 2DIAGNOSTIC, 48, -1.043287746507e+00, 3.544074379163e-05, 1.1581e-01, 1.5321e-03, + 2DIAGNOSTIC, 49, -1.043318411571e+00, 2.933989782266e-05, 1.1735e-01, 1.5361e-03, + 2DIAGNOSTIC, 50, -1.043319347369e+00, 2.596671189675e-05, 1.1898e-01, 1.6270e-03, + 2DIAGNOSTIC, 51, -1.043319656743e+00, 2.430693618711e-05, 1.2110e-01, 2.1219e-03, + 2DIAGNOSTIC, 52, -1.043319665356e+00, 1.584098757543e-05, 1.2345e-01, 2.3549e-03, + 2DIAGNOSTIC, 53, -1.043319665491e+00, 6.594875338949e-06, 1.2577e-01, 2.3131e-03, + 2DIAGNOSTIC, 54, -1.043319665494e+00, 3.591128811799e-06, 1.2790e-01, 2.1300e-03, + 2DIAGNOSTIC, 55, -1.043319665494e+00, 2.156284474808e-06, 1.3005e-01, 2.1551e-03, + 2DIAGNOSTIC, 56, -1.043319665494e+00, 1.368053300539e-06, 1.3193e-01, 1.8792e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.049760541304e-01, 1.797693134862e+308, 1.8127e-01, 4.9342e-02, + 2DIAGNOSTIC, 2, -7.060852743847e-01, 1.797693134862e+308, 1.8467e-01, 3.3970e-03, + 2DIAGNOSTIC, 3, -7.080403489723e-01, 1.797693134862e+308, 1.8824e-01, 3.5720e-03, + 2DIAGNOSTIC, 4, -7.102479986665e-01, 1.797693134862e+308, 1.9095e-01, 2.7030e-03, + 2DIAGNOSTIC, 5, -7.126462094785e-01, 1.797693134862e+308, 1.9342e-01, 2.4700e-03, + 2DIAGNOSTIC, 6, -7.165958122410e-01, 1.797693134862e+308, 1.9597e-01, 2.5570e-03, + 2DIAGNOSTIC, 7, -7.226787392692e-01, 1.797693134862e+308, 1.9874e-01, 2.7709e-03, + 2DIAGNOSTIC, 8, -7.265467164844e-01, 1.797693134862e+308, 2.0159e-01, 2.8481e-03, + 2DIAGNOSTIC, 9, -7.298252587945e-01, 1.797693134862e+308, 2.0570e-01, 4.1051e-03, + 2DIAGNOSTIC, 10, -7.300686539816e-01, 2.591679519012e-03, 2.0820e-01, 2.5020e-03, + 2DIAGNOSTIC, 11, -7.310316430202e-01, 2.357203200029e-03, 2.1077e-01, 2.5690e-03, + 2DIAGNOSTIC, 12, -7.325441059822e-01, 2.034579715708e-03, 2.1337e-01, 2.5980e-03, + 2DIAGNOSTIC, 13, -7.330537342793e-01, 1.650973617522e-03, 2.1598e-01, 2.6171e-03, + 2DIAGNOSTIC, 14, -7.345208679037e-01, 1.277521435178e-03, 2.1855e-01, 2.5659e-03, + 2DIAGNOSTIC, 15, -7.362809679367e-01, 9.471572340719e-04, 2.2183e-01, 3.2859e-03, + 2DIAGNOSTIC, 16, -7.374397289813e-01, 6.946931110527e-04, 2.2533e-01, 3.4940e-03, + 2DIAGNOSTIC, 17, -7.375740879982e-01, 5.503218606071e-04, 2.2849e-01, 3.1629e-03, + 2DIAGNOSTIC, 18, -7.373991053349e-01, 4.508816075584e-04, 2.3122e-01, 2.7251e-03, + 2DIAGNOSTIC, 19, -7.377122234384e-01, 3.949878707369e-04, 2.3392e-01, 2.7010e-03, + 2DIAGNOSTIC, 20, -7.383194256086e-01, 3.239203111338e-04, 2.3677e-01, 2.8510e-03, + 2DIAGNOSTIC, 21, -7.386506501918e-01, 2.527724625547e-04, 2.4091e-01, 4.1430e-03, + 2DIAGNOSTIC, 22, -7.387481064198e-01, 1.938586770224e-04, 2.4427e-01, 3.3541e-03, + 2DIAGNOSTIC, 23, -7.388648711983e-01, 1.329673216468e-04, 2.4822e-01, 3.9549e-03, + 2DIAGNOSTIC, 24, -7.387947313562e-01, 8.699732410675e-05, 2.5129e-01, 3.0658e-03, + 2DIAGNOSTIC, 25, -7.387604046807e-01, 6.298414380562e-05, 2.5400e-01, 2.7120e-03, + 2DIAGNOSTIC, 26, -7.387330717192e-01, 5.190110042790e-05, 2.5791e-01, 3.9160e-03, + 2DIAGNOSTIC, 27, -7.387542352642e-01, 3.933474659561e-05, 2.6155e-01, 3.6321e-03, + 2DIAGNOSTIC, 28, -7.386613855391e-01, 2.035846369555e-05, 2.6476e-01, 3.2089e-03, + 2DIAGNOSTIC, 29, -7.387215047353e-01, 5.789124279794e-06, 2.6776e-01, 3.0050e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.510924753277e-01, 1.797693134862e+308, 3.3756e-01, 6.9798e-02, + 2DIAGNOSTIC, 2, -5.513406927256e-01, 1.797693134862e+308, 3.5186e-01, 1.4300e-02, + 2DIAGNOSTIC, 3, -5.517839700420e-01, 1.797693134862e+308, 3.6654e-01, 1.4680e-02, + 2DIAGNOSTIC, 4, -5.524783056626e-01, 1.797693134862e+308, 3.8069e-01, 1.4155e-02, + 2DIAGNOSTIC, 5, -5.530511221164e-01, 1.797693134862e+308, 3.9452e-01, 1.3830e-02, + 2DIAGNOSTIC, 6, -5.537045027141e-01, 1.797693134862e+308, 4.0832e-01, 1.3798e-02, + 2DIAGNOSTIC, 7, -5.542480133936e-01, 1.797693134862e+308, 4.2372e-01, 1.5403e-02, + 2DIAGNOSTIC, 8, -5.543566290294e-01, 1.797693134862e+308, 4.3924e-01, 1.5516e-02, + 2DIAGNOSTIC, 9, -5.543661464377e-01, 1.797693134862e+308, 4.5356e-01, 1.4320e-02, + 2DIAGNOSTIC, 10, -5.543717078111e-01, 4.483332986985e-04, 4.6789e-01, 1.4331e-02, + 2DIAGNOSTIC, 11, -5.543774700128e-01, 3.448792047278e-04, 4.8539e-01, 1.7501e-02, + 2DIAGNOSTIC, 12, -5.543755816586e-01, 2.382891165066e-04, 4.9978e-01, 1.4390e-02, + 2DIAGNOSTIC, 13, -5.543733640711e-01, 1.440408039591e-04, 5.1485e-01, 1.5066e-02, + 2DIAGNOSTIC, 14, -5.543714633943e-01, 7.581398264767e-05, 5.2722e-01, 1.2369e-02, + 2DIAGNOSTIC, 15, -5.543710401175e-01, 2.921733024942e-05, 5.4115e-01, 1.3928e-02, + 2DIAGNOSTIC, 16, -5.543700964164e-01, 6.447054758704e-06, 5.5393e-01, 1.2783e-02, + 2DIAGNOSTIC, 17, -5.543712429408e-01, 2.309372351572e-06, 5.6862e-01, 1.4688e-02, + 2DIAGNOSTIC, 18, -5.543706452392e-01, 1.669139563239e-06, 5.8213e-01, 1.3513e-02, + 2DIAGNOSTIC, 19, -5.543741220206e-01, 1.455016152299e-06, 5.9422e-01, 1.2090e-02, + 2DIAGNOSTIC, 20, -5.543715495084e-01, 1.352043112239e-06, 6.0791e-01, 1.3694e-02, + 2DIAGNOSTIC, 21, -5.543771543063e-01, 1.561894272403e-06, 6.2169e-01, 1.3775e-02, + 2DIAGNOSTIC, 22, -5.543724021847e-01, 1.590833890057e-06, 6.3392e-01, 1.2233e-02, + 2DIAGNOSTIC, 23, -5.543742138698e-01, 1.598978378599e-06, 6.4762e-01, 1.3700e-02, + 2DIAGNOSTIC, 24, -5.543779673177e-01, 1.624985977534e-06, 6.6137e-01, 1.3753e-02, + 2DIAGNOSTIC, 25, -5.543739645320e-01, 1.527540632956e-06, 6.7476e-01, 1.3386e-02, + 2DIAGNOSTIC, 26, -5.543747564585e-01, 1.413458607324e-06, 6.8812e-01, 1.3355e-02, + 2DIAGNOSTIC, 27, -5.543784183243e-01, 1.382552399322e-06, 7.0318e-01, 1.5060e-02, + 2DIAGNOSTIC, 28, -5.543818317976e-01, 1.382116939633e-06, 7.1654e-01, 1.3362e-02, + 2DIAGNOSTIC, 29, -5.543715533216e-01, 1.237672845156e-06, 7.3040e-01, 1.3863e-02, + 2DIAGNOSTIC, 30, -5.543698240859e-01, 1.020459238978e-06, 7.4247e-01, 1.2073e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.555541529452e-01, 1.797693134862e+308, 9.7414e-01, 2.3167e-01, + Elapsed time (stage 1): 9.9902e-01 + + +Total elapsed time: 1.9997e+00 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:35:50 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean_mask.nii.gz -u int  +Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. +Failed to import duecredit due to No module named 'duecredit' +INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana +INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_mc.nii.gz'] +INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/figures +INFO tedana:tedana_workflow:561 Using user-defined mask +INFO tedana:tedana_workflow:609 Computing T2* map +INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates +INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcom_bold.nii.gz +INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO pca:tedpca:315 Selected 34 components with mdl dimensionality detection +INFO ica:tedica:83 ICA with random seed 42 converged in 77 iterations +INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results +INFO collect:generate_metrics:123 Calculating weight maps +INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data +INFO collect:generate_metrics:145 Calculating z-statistic maps +INFO collect:generate_metrics:155 Calculating F-statistic maps +INFO collect:generate_metrics:165 Thresholding z-statistic maps +INFO collect:generate_metrics:172 Calculating T2* F-statistic maps +INFO collect:generate_metrics:179 Calculating S0 F-statistic maps +INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps +INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps +INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps +INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps +INFO collect:generate_metrics:213 Calculating kappa and rho +INFO collect:generate_metrics:222 Calculating variance explained +INFO collect:generate_metrics:228 Calculating normalized variance explained +INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide + dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum +INFO collect:generate_metrics:257 Calculating signal-noise t-statistics +INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps +INFO collect:generate_metrics:306 Calculating decision table score +INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 +INFO io:denoise_ts:374 Variance explained by decomposition: 78.67% +INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcomAccepted_bold.nii.gz +INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcomRejected_bold.nii.gz +INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcomDenoised_bold.nii.gz +INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-ICA_components.nii.gz +INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-ICAAccepted_components.nii.gz +INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz +INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. +INFO io:denoise_ts:374 Variance explained by decomposition: 78.67% +/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. + nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) +INFO tedana:tedana_workflow:918 Generating dynamic report +INFO tedana:tedana_workflow:921 Workflow completed +[15075 11507 33135 3496 2066 19510 6273 824 7861 3880 5123 8483 + 12919 3919 1423 1609 218 5867 3997 1244 1306 234 1054 223 + 219 341 0 0 0 0 0 0 0 0] +[84093 31799 23232 29732 27105 11157 23773 5731 11366 11261 10710 11908 + 6936 8139 6212 6992 3148 3687 5352 1838 1331 851 1638 1092 + 1569 2300 688 2087 1493 776 841 411 0 545] +[ 0 276 16403 596 25932 1457 845 200 10284 4939 707 0 + 7858 0 1432 1315 15132 0 737 0 361 0 0 0 + 1102 670 0 6558 4929 10432 9835 10426 5588 362] +[ 0 2364 1086 14687 482 4584 9512 364 436 28579 17445 9661 + 10099 817 16151 2370 78976 3317 2328 996 4895 336 13990 1260 + 8088 2168 1357 1638 1028 390 2343 506 573 9975] + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:45:24 EDT 2024: +COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:45:29 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_metric_FD.1D --fd  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:13 EDT 2024: +COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.1D  + +[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:13 EDT 2024: +COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz  +renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz' + +[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  + +[ INFO ]..... Generating a func binary mask  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:13 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:23 EDT 2024: +COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:26 EDT 2024: +COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain_mask.nii.gz  +Configuring model on the CPU +Running SynthStrip model version 1 +Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz +Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz +Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain_mask.nii.gz +If you use SynthStrip in your analysis, please cite: +---------------------------------------------------- +SynthStrip: Skull-Stripping for Any Brain Image. +A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. +NeuroImage 206 (2022), 119474. + +[ INFO ]..... Subject PNC010 has MELODIC outputs  + +[ INFO ]..... Creating a synthetic T1nativepro image for registration  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:50:33 EDT 2024: +COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-nativepro_desc-T1wbold.nii.gz  + +[ INFO ]..... Registering func MRI to nativepro  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:50:58 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:54:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:54:05 EDT 2024: +COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  +SynthSeg-robust 2.0 +using CPU, hiding all CUDA_VISIBLE_DEVICES +using 10 threads +predicting 1/1 + +segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthseg.nii.gz + +If you use the new robust version of SynthSeg in a publication, please cite: +Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining +B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:55:23 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:55:24 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,0]  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz + Mask images: + Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,0] + Number of threads: 10 + Spline distance: 26 + Transform type: a + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz +Dimension = 3 +Number of stages = 2 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x558b30e20d20) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1698 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1483 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [79.2585, 126.986, -121.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558b30c97730) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1480 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f990aded010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x558b30e24020) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1699 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1696 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [111.551, 65.8168, -109.688] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558b30e2a0c0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1693 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f990772e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x558b30e3a840) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2126 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1911 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [160, 243, 259] + Spacing: [1, 1, 1] + Origin: [79.2585, 126.986, -121.949] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558b30e26890) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1908 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f9902a5a010 + Container manages memory: true + Size: 10069920 + Capacity: 10069920 + + Moving image = Image (0x558b30e3e3e0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2127 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2124 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [111.551, 65.8168, -109.688] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x558b30e2d130) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2121 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f98ff39b010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 2 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.711532671357e-01, 1.797693134862e+308, 2.3786e-01, 2.3786e-01, + 2DIAGNOSTIC, 2, -5.737409791843e-01, 1.797693134862e+308, 2.3925e-01, 1.3850e-03, + 2DIAGNOSTIC, 3, -5.769863702869e-01, 1.797693134862e+308, 2.4058e-01, 1.3351e-03, + 2DIAGNOSTIC, 4, -5.785221848645e-01, 1.797693134862e+308, 2.4198e-01, 1.3969e-03, + 2DIAGNOSTIC, 5, -5.812499161245e-01, 1.797693134862e+308, 2.4357e-01, 1.5879e-03, + 2DIAGNOSTIC, 6, -5.832024489121e-01, 1.797693134862e+308, 2.4517e-01, 1.6000e-03, + 2DIAGNOSTIC, 7, -5.836773276445e-01, 1.797693134862e+308, 2.4689e-01, 1.7211e-03, + 2DIAGNOSTIC, 8, -5.853802821690e-01, 1.797693134862e+308, 2.4858e-01, 1.6949e-03, + 2DIAGNOSTIC, 9, -5.856115325718e-01, 1.797693134862e+308, 2.5031e-01, 1.7240e-03, + 2DIAGNOSTIC, 10, -5.851356943216e-01, 1.617738944593e-03, 2.5193e-01, 1.6210e-03, + 2DIAGNOSTIC, 11, -5.852010698876e-01, 1.139931631688e-03, 2.5378e-01, 1.8551e-03, + 2DIAGNOSTIC, 12, -5.861565350401e-01, 7.824083303284e-04, 2.5566e-01, 1.8790e-03, + 2DIAGNOSTIC, 13, -5.868023264496e-01, 5.544553513102e-04, 2.5730e-01, 1.6351e-03, + 2DIAGNOSTIC, 14, -5.879045778050e-01, 3.990289125126e-04, 2.5898e-01, 1.6811e-03, + 2DIAGNOSTIC, 15, -5.916323762616e-01, 4.373110559149e-04, 2.6086e-01, 1.8780e-03, + 2DIAGNOSTIC, 16, -6.035629817295e-01, 8.502127600243e-04, 2.6326e-01, 2.4030e-03, + 2DIAGNOSTIC, 17, -6.057420500019e-01, 1.200607512690e-03, 2.6685e-01, 3.5939e-03, + 2DIAGNOSTIC, 18, -6.058391204997e-01, 1.451735302707e-03, 2.6889e-01, 2.0411e-03, + 2DIAGNOSTIC, 19, -6.065810027021e-01, 1.571567978619e-03, 2.7096e-01, 2.0680e-03, + 2DIAGNOSTIC, 20, -6.072466956167e-01, 1.536062342582e-03, 2.7269e-01, 1.7228e-03, + 2DIAGNOSTIC, 21, -6.078700138184e-01, 1.371692760270e-03, 2.7433e-01, 1.6470e-03, + 2DIAGNOSTIC, 22, -6.081237775480e-01, 1.120875993040e-03, 2.7600e-01, 1.6720e-03, + 2DIAGNOSTIC, 23, -6.086645105074e-01, 8.169878034152e-04, 2.7785e-01, 1.8501e-03, + 2DIAGNOSTIC, 24, -6.086869308672e-01, 4.863858285970e-04, 2.7945e-01, 1.5919e-03, + 2DIAGNOSTIC, 25, -6.082869168138e-01, 1.951600379190e-04, 2.8086e-01, 1.4179e-03, + 2DIAGNOSTIC, 26, -6.083020278202e-01, 1.280655692878e-04, 2.8303e-01, 2.1610e-03, + 2DIAGNOSTIC, 27, -6.083151512136e-01, 9.306005319652e-05, 2.8494e-01, 1.9178e-03, + 2DIAGNOSTIC, 28, -6.078683907143e-01, 4.564542284582e-05, 2.8670e-01, 1.7571e-03, + 2DIAGNOSTIC, 29, -6.089022474897e-01, 2.671802863139e-05, 2.8868e-01, 1.9751e-03, + 2DIAGNOSTIC, 30, -6.089194975229e-01, 1.699081645289e-05, 2.9089e-01, 2.2109e-03, + 2DIAGNOSTIC, 31, -6.084465935846e-01, 8.800806080907e-06, 2.9286e-01, 1.9760e-03, + 2DIAGNOSTIC, 32, -6.084470852620e-01, 4.340490452448e-06, 2.9491e-01, 2.0518e-03, + 2DIAGNOSTIC, 33, -6.089255447999e-01, 1.445644625612e-05, 2.9711e-01, 2.1989e-03, + 2DIAGNOSTIC, 34, -6.089303348137e-01, 2.271321056063e-05, 2.9878e-01, 1.6649e-03, + 2DIAGNOSTIC, 35, -6.089328258847e-01, 2.295763981751e-05, 3.0066e-01, 1.8840e-03, + 2DIAGNOSTIC, 36, -6.089381616928e-01, 2.171850637583e-05, 3.0256e-01, 1.8950e-03, + 2DIAGNOSTIC, 37, -6.089425123067e-01, 1.911938264713e-05, 3.0446e-01, 1.9031e-03, + 2DIAGNOSTIC, 38, -6.084727575388e-01, 2.895067049306e-06, 3.0635e-01, 1.8930e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.646958249230e-01, 1.797693134862e+308, 5.3742e-01, 2.3107e-01, + 2DIAGNOSTIC, 2, -4.638307726255e-01, 1.797693134862e+308, 5.4012e-01, 2.6939e-03, + 2DIAGNOSTIC, 3, -4.642916976633e-01, 1.797693134862e+308, 5.4224e-01, 2.1231e-03, + 2DIAGNOSTIC, 4, -4.647245815017e-01, 1.797693134862e+308, 5.4450e-01, 2.2552e-03, + 2DIAGNOSTIC, 5, -4.657254253801e-01, 1.797693134862e+308, 5.4657e-01, 2.0700e-03, + 2DIAGNOSTIC, 6, -4.699122732206e-01, 1.797693134862e+308, 5.4867e-01, 2.1091e-03, + 2DIAGNOSTIC, 7, -4.772526863622e-01, 1.797693134862e+308, 5.5076e-01, 2.0828e-03, + 2DIAGNOSTIC, 8, -4.882894305428e-01, 1.797693134862e+308, 5.5322e-01, 2.4612e-03, + 2DIAGNOSTIC, 9, -4.974700971786e-01, 1.797693134862e+308, 5.5620e-01, 2.9769e-03, + 2DIAGNOSTIC, 10, -5.046251773499e-01, 5.537521154322e-03, 5.5941e-01, 3.2198e-03, + 2DIAGNOSTIC, 11, -5.061622939884e-01, 6.062942547536e-03, 5.6191e-01, 2.4951e-03, + 2DIAGNOSTIC, 12, -5.076628392539e-01, 5.986112648665e-03, 5.6408e-01, 2.1749e-03, + 2DIAGNOSTIC, 13, -5.093193379533e-01, 5.474089893290e-03, 5.6655e-01, 2.4700e-03, + 2DIAGNOSTIC, 14, -5.100871668883e-01, 4.589886747289e-03, 5.7002e-01, 3.4659e-03, + 2DIAGNOSTIC, 15, -5.100492248505e-01, 3.449661601241e-03, 5.7223e-01, 2.2099e-03, + 2DIAGNOSTIC, 16, -5.116551569914e-01, 2.355150123378e-03, 5.7446e-01, 2.2321e-03, + 2DIAGNOSTIC, 17, -5.132419234969e-01, 1.478037516789e-03, 5.7699e-01, 2.5251e-03, + 2DIAGNOSTIC, 18, -5.135493321778e-01, 9.244272363307e-04, 5.7983e-01, 2.8441e-03, + 2DIAGNOSTIC, 19, -5.135203425719e-01, 6.199082093742e-04, 5.8241e-01, 2.5780e-03, + 2DIAGNOSTIC, 20, -5.135599468566e-01, 4.976042916805e-04, 5.8479e-01, 2.3758e-03, + 2DIAGNOSTIC, 21, -5.139078165977e-01, 3.917766060979e-04, 5.8743e-01, 2.6479e-03, + 2DIAGNOSTIC, 22, -5.144441031090e-01, 3.105094367653e-04, 5.9000e-01, 2.5659e-03, + 2DIAGNOSTIC, 23, -5.166473141690e-01, 3.033214377097e-04, 5.9312e-01, 3.1190e-03, + 2DIAGNOSTIC, 24, -5.168028959500e-01, 2.903702557808e-04, 5.9632e-01, 3.2060e-03, + 2DIAGNOSTIC, 25, -5.169262214287e-01, 2.535075686113e-04, 5.9887e-01, 2.5492e-03, + 2DIAGNOSTIC, 26, -5.172165912378e-01, 2.371111220086e-04, 6.0154e-01, 2.6619e-03, + 2DIAGNOSTIC, 27, -5.173871449632e-01, 2.361657781980e-04, 6.0410e-01, 2.5659e-03, + 2DIAGNOSTIC, 28, -5.174156225234e-01, 2.193238879462e-04, 6.0666e-01, 2.5589e-03, + 2DIAGNOSTIC, 29, -5.175594033060e-01, 1.854753892844e-04, 6.0922e-01, 2.5580e-03, + 2DIAGNOSTIC, 30, -5.181671311196e-01, 1.492994032929e-04, 6.1200e-01, 2.7828e-03, + 2DIAGNOSTIC, 31, -5.191914971323e-01, 1.264482929672e-04, 6.1618e-01, 4.1828e-03, + 2DIAGNOSTIC, 32, -5.197181401522e-01, 1.105264162295e-04, 6.1888e-01, 2.6970e-03, + 2DIAGNOSTIC, 33, -5.196969865546e-01, 1.227225387384e-04, 6.2192e-01, 3.0370e-03, + 2DIAGNOSTIC, 34, -5.197629702697e-01, 1.266698325366e-04, 6.2541e-01, 3.4931e-03, + 2DIAGNOSTIC, 35, -5.198643780316e-01, 1.218464596193e-04, 6.2772e-01, 2.3041e-03, + 2DIAGNOSTIC, 36, -5.199191125951e-01, 1.108035011312e-04, 6.2994e-01, 2.2230e-03, + 2DIAGNOSTIC, 37, -5.200022241028e-01, 9.376909392494e-05, 6.3275e-01, 2.8090e-03, + 2DIAGNOSTIC, 38, -5.201821414179e-01, 7.216947507507e-05, 6.3590e-01, 3.1509e-03, + 2DIAGNOSTIC, 39, -5.203828903173e-01, 4.986829454087e-05, 6.3941e-01, 3.5129e-03, + 2DIAGNOSTIC, 40, -5.205074942654e-01, 3.393739675082e-05, 6.4249e-01, 3.0770e-03, + 2DIAGNOSTIC, 41, -5.206998599018e-01, 3.211425951407e-05, 6.4558e-01, 3.0949e-03, + 2DIAGNOSTIC, 42, -5.208687128854e-01, 3.668257412123e-05, 6.4821e-01, 2.6240e-03, + 2DIAGNOSTIC, 43, -5.215483671020e-01, 4.613170434646e-05, 6.5083e-01, 2.6209e-03, + 2DIAGNOSTIC, 44, -5.218677368047e-01, 5.546011113839e-05, 6.5313e-01, 2.3069e-03, + 2DIAGNOSTIC, 45, -5.224803515688e-01, 6.802171206844e-05, 6.5545e-01, 2.3150e-03, + 2DIAGNOSTIC, 46, -5.298340296874e-01, 1.635981196621e-04, 6.5806e-01, 2.6081e-03, + 2DIAGNOSTIC, 47, -5.300195087956e-01, 2.401176258039e-04, 6.6187e-01, 3.8102e-03, + 2DIAGNOSTIC, 48, -5.307397839636e-01, 3.017858541945e-04, 6.6436e-01, 2.4920e-03, + 2DIAGNOSTIC, 49, -5.317231173705e-01, 3.465284263982e-04, 6.6655e-01, 2.1882e-03, + 2DIAGNOSTIC, 50, -5.330479404820e-01, 3.718816298647e-04, 6.6873e-01, 2.1849e-03, + 2DIAGNOSTIC, 51, -5.337319434633e-01, 3.687380898312e-04, 6.7123e-01, 2.4941e-03, + 2DIAGNOSTIC, 52, -5.344314979917e-01, 3.394351357923e-04, 6.7374e-01, 2.5129e-03, + 2DIAGNOSTIC, 53, -5.344339686326e-01, 2.871243116539e-04, 6.7594e-01, 2.2020e-03, + 2DIAGNOSTIC, 54, -5.344829194069e-01, 2.138556214292e-04, 6.7812e-01, 2.1780e-03, + 2DIAGNOSTIC, 55, -5.348060436070e-01, 1.301697967082e-04, 6.8028e-01, 2.1622e-03, + 2DIAGNOSTIC, 56, -5.351623057667e-01, 1.134177092946e-04, 6.8251e-01, 2.2249e-03, + 2DIAGNOSTIC, 57, -5.365348168648e-01, 1.015141051133e-04, 6.8535e-01, 2.8379e-03, + 2DIAGNOSTIC, 58, -5.373797096091e-01, 9.495909492124e-05, 6.9304e-01, 7.6959e-03, + 2DIAGNOSTIC, 59, -5.373796980480e-01, 8.857788048493e-05, 6.9523e-01, 2.1839e-03, + 2DIAGNOSTIC, 60, -5.373797978889e-01, 8.629716704945e-05, 6.9747e-01, 2.2418e-03, + 2DIAGNOSTIC, 61, -5.373799666715e-01, 8.188374648047e-05, 6.9962e-01, 2.1510e-03, + 2DIAGNOSTIC, 62, -5.373802519406e-01, 7.583136161415e-05, 7.0178e-01, 2.1620e-03, + 2DIAGNOSTIC, 63, -5.373807339271e-01, 6.266473118156e-05, 7.0395e-01, 2.1670e-03, + 2DIAGNOSTIC, 64, -5.373815478202e-01, 4.449887153996e-05, 7.0620e-01, 2.2490e-03, + 2DIAGNOSTIC, 65, -5.373829208482e-01, 2.560198600011e-05, 7.0846e-01, 2.2681e-03, + 2DIAGNOSTIC, 66, -5.373852332295e-01, 7.632313987958e-06, 7.1070e-01, 2.2330e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.149793570195e-01, 1.797693134862e+308, 9.6638e-01, 2.5569e-01, + 2DIAGNOSTIC, 2, -4.159929695307e-01, 1.797693134862e+308, 9.7872e-01, 1.2335e-02, + 2DIAGNOSTIC, 3, -4.171740876438e-01, 1.797693134862e+308, 9.9093e-01, 1.2208e-02, + 2DIAGNOSTIC, 4, -4.197223355721e-01, 1.797693134862e+308, 1.0029e+00, 1.1993e-02, + 2DIAGNOSTIC, 5, -4.210634467407e-01, 1.797693134862e+308, 1.0153e+00, 1.2420e-02, + 2DIAGNOSTIC, 6, -4.220994762808e-01, 1.797693134862e+308, 1.0277e+00, 1.2384e-02, + 2DIAGNOSTIC, 7, -4.235283790723e-01, 1.797693134862e+308, 1.0401e+00, 1.2348e-02, + 2DIAGNOSTIC, 8, -4.253975133939e-01, 1.797693134862e+308, 1.0542e+00, 1.4080e-02, + 2DIAGNOSTIC, 9, -4.285925263389e-01, 1.797693134862e+308, 1.0681e+00, 1.3940e-02, + 2DIAGNOSTIC, 10, -4.297618583917e-01, 2.261013995823e-03, 1.0803e+00, 1.2189e-02, + 2DIAGNOSTIC, 11, -4.321956654546e-01, 2.183849909708e-03, 1.0928e+00, 1.2556e-02, + 2DIAGNOSTIC, 12, -4.376999025388e-01, 2.285489488861e-03, 1.1074e+00, 1.4580e-02, + 2DIAGNOSTIC, 13, -4.586770766363e-01, 3.282387452652e-03, 1.1211e+00, 1.3695e-02, + 2DIAGNOSTIC, 14, -4.872964008443e-01, 5.253996774255e-03, 1.1372e+00, 1.6069e-02, + 2DIAGNOSTIC, 15, -5.148420165401e-01, 7.660413378279e-03, 1.1512e+00, 1.4006e-02, + 2DIAGNOSTIC, 16, -5.326855327208e-01, 9.751141467668e-03, 1.1667e+00, 1.5478e-02, + 2DIAGNOSTIC, 17, -5.458219911819e-01, 1.119093875938e-02, 1.1804e+00, 1.3730e-02, + 2DIAGNOSTIC, 18, -5.491801321260e-01, 1.158602910064e-02, 1.1932e+00, 1.2836e-02, + 2DIAGNOSTIC, 19, -5.533144990007e-01, 1.109569308191e-02, 1.2087e+00, 1.5451e-02, + 2DIAGNOSTIC, 20, -5.607530058843e-01, 9.893913453419e-03, 1.2203e+00, 1.1607e-02, + 2DIAGNOSTIC, 21, -5.649585036248e-01, 8.104497285848e-03, 1.2323e+00, 1.2031e-02, + 2DIAGNOSTIC, 22, -5.769198870382e-01, 6.226741168901e-03, 1.2481e+00, 1.5736e-02, + 2DIAGNOSTIC, 23, -5.792522333091e-01, 4.556916494091e-03, 1.2691e+00, 2.0998e-02, + 2DIAGNOSTIC, 24, -5.796134665754e-01, 3.333195782642e-03, 1.2810e+00, 1.1988e-02, + 2DIAGNOSTIC, 25, -5.818677280356e-01, 2.605374075242e-03, 1.2930e+00, 1.1992e-02, + 2DIAGNOSTIC, 26, -5.832537868894e-01, 2.119425514315e-03, 1.3055e+00, 1.2471e-02, + 2DIAGNOSTIC, 27, -5.843673839323e-01, 1.777943496059e-03, 1.3175e+00, 1.2015e-02, + 2DIAGNOSTIC, 28, -5.872299786761e-01, 1.424809298113e-03, 1.3300e+00, 1.2461e-02, + 2DIAGNOSTIC, 29, -5.933604136525e-01, 1.166408934437e-03, 1.3440e+00, 1.4003e-02, + 2DIAGNOSTIC, 30, -5.996995661623e-01, 1.075426579529e-03, 1.3725e+00, 2.8558e-02, + 2DIAGNOSTIC, 31, -5.996446419184e-01, 9.580241013899e-04, 1.3844e+00, 1.1885e-02, + 2DIAGNOSTIC, 32, -5.997017499747e-01, 9.704279797528e-04, 1.3982e+00, 1.3792e-02, + 2DIAGNOSTIC, 33, -5.997720087943e-01, 9.319468897106e-04, 1.4118e+00, 1.3618e-02, + 2DIAGNOSTIC, 34, -5.998231629308e-01, 8.120980866749e-04, 1.4237e+00, 1.1823e-02, + 2DIAGNOSTIC, 35, -5.999452331763e-01, 6.590380374069e-04, 1.4373e+00, 1.3613e-02, + 2DIAGNOSTIC, 36, -5.999645683684e-01, 4.760064121845e-04, 1.4491e+00, 1.1847e-02, + 2DIAGNOSTIC, 37, -6.000375795047e-01, 2.781903838077e-04, 1.4628e+00, 1.3663e-02, + 2DIAGNOSTIC, 38, -6.000829386894e-01, 1.060309275214e-04, 1.4745e+00, 1.1687e-02, + 2DIAGNOSTIC, 39, -6.001605850656e-01, 1.740845330652e-05, 1.4863e+00, 1.1788e-02, + 2DIAGNOSTIC, 40, -6.002278110972e-01, 1.847234964124e-05, 1.4990e+00, 1.2742e-02, + 2DIAGNOSTIC, 41, -6.003360004090e-01, 1.848672790461e-05, 1.5138e+00, 1.4826e-02, + 2DIAGNOSTIC, 42, -6.004400318344e-01, 1.885174649107e-05, 1.5265e+00, 1.2636e-02, + 2DIAGNOSTIC, 43, -6.005050374438e-01, 1.914082413553e-05, 1.5383e+00, 1.1874e-02, + 2DIAGNOSTIC, 44, -6.007002716116e-01, 2.061476110760e-05, 1.5505e+00, 1.2122e-02, + 2DIAGNOSTIC, 45, -6.011064843725e-01, 2.630425278597e-05, 1.5627e+00, 1.2261e-02, + 2DIAGNOSTIC, 46, -6.021084921640e-01, 4.089448736295e-05, 1.5804e+00, 1.7696e-02, + 2DIAGNOSTIC, 47, -6.022737743844e-01, 5.338369264522e-05, 1.5942e+00, 1.3760e-02, + 2DIAGNOSTIC, 48, -6.023383917502e-01, 6.160218785609e-05, 1.6081e+00, 1.3974e-02, + 2DIAGNOSTIC, 49, -6.023993478815e-01, 6.524746931795e-05, 1.6220e+00, 1.3825e-02, + 2DIAGNOSTIC, 50, -6.024091457296e-01, 6.325702541327e-05, 1.6376e+00, 1.5669e-02, + 2DIAGNOSTIC, 51, -6.023872415108e-01, 5.608201043881e-05, 1.6519e+00, 1.4305e-02, + 2DIAGNOSTIC, 52, -6.024137944236e-01, 4.523920234384e-05, 1.6671e+00, 1.5203e-02, + 2DIAGNOSTIC, 53, -6.024071595889e-01, 3.127881464365e-05, 1.6792e+00, 1.2080e-02, + 2DIAGNOSTIC, 54, -6.024251222964e-01, 1.702382900818e-05, 1.6933e+00, 1.4059e-02, + 2DIAGNOSTIC, 55, -6.024596299876e-01, 5.676973005648e-06, 1.7057e+00, 1.2445e-02, + 2DIAGNOSTIC, 56, -6.024876739140e-01, 3.778301185628e-06, 1.7179e+00, 1.2163e-02, + 2DIAGNOSTIC, 57, -6.026526982577e-01, 4.631451491221e-06, 1.7318e+00, 1.3920e-02, + 2DIAGNOSTIC, 58, -6.027503782328e-01, 6.457894616334e-06, 1.7439e+00, 1.2088e-02, + 2DIAGNOSTIC, 59, -6.029010062910e-01, 9.493627284682e-06, 1.7562e+00, 1.2319e-02, + 2DIAGNOSTIC, 60, -6.029310982553e-01, 1.190259762408e-05, 1.7704e+00, 1.4225e-02, + 2DIAGNOSTIC, 61, -6.030627592143e-01, 1.406790578269e-05, 1.7931e+00, 2.2636e-02, + 2DIAGNOSTIC, 62, -6.031413055160e-01, 1.570224221668e-05, 1.8072e+00, 1.4101e-02, + 2DIAGNOSTIC, 63, -6.031293935913e-01, 1.565219385419e-05, 1.8195e+00, 1.2327e-02, + 2DIAGNOSTIC, 64, -6.031335050872e-01, 1.434747178095e-05, 1.8331e+00, 1.3624e-02, + 2DIAGNOSTIC, 65, -6.031194736871e-01, 1.193650107669e-05, 1.8489e+00, 1.5791e-02, + 2DIAGNOSTIC, 66, -6.031392766643e-01, 8.850094843669e-06, 1.8608e+00, 1.1833e-02, + 2DIAGNOSTIC, 67, -6.030888361674e-01, 5.910610119890e-06, 1.8728e+00, 1.1996e-02, + 2DIAGNOSTIC, 68, -6.031082068751e-01, 3.417161901918e-06, 1.8862e+00, 1.3402e-02, + 2DIAGNOSTIC, 69, -6.030928682612e-01, 1.726479127349e-06, 1.9000e+00, 1.3819e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.024128176884e-01, 1.797693134862e+308, 2.3169e+00, 4.1688e-01, + 2DIAGNOSTIC, 2, -5.027222098116e-01, 1.797693134862e+308, 2.4012e+00, 8.4354e-02, + 2DIAGNOSTIC, 3, -5.029041396814e-01, 1.797693134862e+308, 2.4849e+00, 8.3677e-02, + 2DIAGNOSTIC, 4, -5.032236658680e-01, 1.797693134862e+308, 2.5826e+00, 9.7690e-02, + 2DIAGNOSTIC, 5, -5.034095253664e-01, 1.797693134862e+308, 2.7069e+00, 1.2430e-01, + 2DIAGNOSTIC, 6, -5.034629021475e-01, 1.797693134862e+308, 2.8440e+00, 1.3709e-01, + 2DIAGNOSTIC, 7, -5.034879728783e-01, 1.797693134862e+308, 2.9212e+00, 7.7201e-02, + 2DIAGNOSTIC, 8, -5.035476803653e-01, 1.797693134862e+308, 2.9992e+00, 7.8043e-02, + 2DIAGNOSTIC, 9, -5.036042857012e-01, 1.797693134862e+308, 3.0783e+00, 7.9081e-02, + 2DIAGNOSTIC, 10, -5.036874208119e-01, 1.516692420837e-04, 3.1542e+00, 7.5858e-02, + 2DIAGNOSTIC, 11, -5.037222891250e-01, 1.066043956048e-04, 3.2304e+00, 7.6287e-02, + 2DIAGNOSTIC, 12, -5.037945281367e-01, 7.779670462510e-05, 3.3110e+00, 8.0585e-02, + 2DIAGNOSTIC, 13, -5.038814807583e-01, 5.798503419019e-05, 3.3951e+00, 8.4086e-02, + 2DIAGNOSTIC, 14, -5.040213962904e-01, 5.421373297503e-05, 3.4910e+00, 9.5834e-02, + 2DIAGNOSTIC, 15, -5.041129016863e-01, 5.649987896220e-05, 3.6133e+00, 1.2236e-01, + 2DIAGNOSTIC, 16, -5.041635112436e-01, 5.719029117086e-05, 3.7231e+00, 1.0975e-01, + 2DIAGNOSTIC, 17, -5.041657460686e-01, 5.364393935217e-05, 3.8398e+00, 1.1670e-01, + 2DIAGNOSTIC, 18, -5.041677809221e-01, 4.763686295284e-05, 3.9402e+00, 1.0039e-01, + 2DIAGNOSTIC, 19, -5.041631499497e-01, 3.946662588384e-05, 4.0365e+00, 9.6346e-02, + 2DIAGNOSTIC, 20, -5.041623178439e-01, 3.090307862776e-05, 4.1348e+00, 9.8267e-02, + 2DIAGNOSTIC, 21, -5.041601621846e-01, 2.130598487327e-05, 4.2358e+00, 1.0101e-01, + 2DIAGNOSTIC, 22, -5.041610184071e-01, 1.262019302091e-05, 4.3381e+00, 1.0233e-01, + 2DIAGNOSTIC, 23, -5.041622627653e-01, 5.755374226132e-06, 4.4421e+00, 1.0403e-01, + 2DIAGNOSTIC, 24, -5.041604420962e-01, 2.253670797016e-06, 4.5443e+00, 1.0218e-01, + 2DIAGNOSTIC, 25, -5.041645216944e-01, 1.073740105231e-06, 4.6463e+00, 1.0197e-01, + 2DIAGNOSTIC, 26, -5.041689094144e-01, 1.192538952352e-06, 4.7289e+00, 8.2624e-02, + 2DIAGNOSTIC, 27, -5.041697494800e-01, 1.364668881614e-06, 4.8124e+00, 8.3524e-02, + 2DIAGNOSTIC, 28, -5.041765897178e-01, 1.689133060805e-06, 4.9095e+00, 9.7096e-02, + 2DIAGNOSTIC, 29, -5.042044640295e-01, 2.389392371085e-06, 4.9918e+00, 8.2306e-02, + 2DIAGNOSTIC, 30, -5.042630772458e-01, 3.994321888669e-06, 5.0753e+00, 8.3477e-02, + 2DIAGNOSTIC, 31, -5.042881986536e-01, 5.611085684878e-06, 5.1736e+00, 9.8295e-02, + 2DIAGNOSTIC, 32, -5.043039681909e-01, 6.992343447511e-06, 5.2523e+00, 7.8663e-02, + 2DIAGNOSTIC, 33, -5.043298861029e-01, 8.198142280688e-06, 5.3511e+00, 9.8790e-02, + 2DIAGNOSTIC, 34, -5.043559503038e-01, 9.033323785344e-06, 5.5021e+00, 1.5105e-01, + 2DIAGNOSTIC, 35, -5.043759321579e-01, 9.417065405380e-06, 5.5983e+00, 9.6157e-02, + 2DIAGNOSTIC, 36, -5.043790310278e-01, 9.087342630745e-06, 5.6944e+00, 9.6092e-02, + 2DIAGNOSTIC, 37, -5.043753753974e-01, 7.970395380655e-06, 5.8042e+00, 1.0987e-01, + 2DIAGNOSTIC, 38, -5.043758089469e-01, 6.345923768573e-06, 5.9059e+00, 1.0167e-01, + 2DIAGNOSTIC, 39, -5.043746989219e-01, 4.641768298484e-06, 6.0484e+00, 1.4253e-01, + 2DIAGNOSTIC, 40, -5.043730736083e-01, 3.453411764512e-06, 6.1483e+00, 9.9893e-02, + 2DIAGNOSTIC, 41, -5.043680322522e-01, 2.348589621056e-06, 6.2476e+00, 9.9321e-02, + 2DIAGNOSTIC, 42, -5.043664443040e-01, 1.337420910356e-06, 6.3347e+00, 8.7062e-02, + Elapsed time (stage 0): 6.4760e+00 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [12, 12, 12] + Shrink factors (level 2 out of 4): [8, 8, 8] + Shrink factors (level 3 out of 4): [4, 4, 4] + Shrink factors (level 4 out of 4): [2, 2, 2] + smoothing sigmas per level: [4, 3, 2, 1] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -8.039911036890e-01, 1.797693134862e+308, 2.0776e-01, 2.0776e-01, + 2DIAGNOSTIC, 2, -8.063011561410e-01, 1.797693134862e+308, 2.0893e-01, 1.1692e-03, + 2DIAGNOSTIC, 3, -8.106072392398e-01, 1.797693134862e+308, 2.1010e-01, 1.1699e-03, + 2DIAGNOSTIC, 4, -8.146238210157e-01, 1.797693134862e+308, 2.1126e-01, 1.1580e-03, + 2DIAGNOSTIC, 5, -8.204014202401e-01, 1.797693134862e+308, 2.1241e-01, 1.1520e-03, + 2DIAGNOSTIC, 6, -8.289069463608e-01, 1.797693134862e+308, 2.1360e-01, 1.1871e-03, + 2DIAGNOSTIC, 7, -8.457594422512e-01, 1.797693134862e+308, 2.1551e-01, 1.9090e-03, + 2DIAGNOSTIC, 8, -8.534300615372e-01, 1.797693134862e+308, 2.1668e-01, 1.1678e-03, + 2DIAGNOSTIC, 9, -8.623717805713e-01, 1.797693134862e+308, 2.1795e-01, 1.2751e-03, + 2DIAGNOSTIC, 10, -8.747614531442e-01, 5.664733935411e-03, 2.1966e-01, 1.7121e-03, + 2DIAGNOSTIC, 11, -8.852438833799e-01, 5.766998021373e-03, 2.2179e-01, 2.1250e-03, + 2DIAGNOSTIC, 12, -8.867458371099e-01, 5.434205660450e-03, 2.2409e-01, 2.2988e-03, + 2DIAGNOSTIC, 13, -8.869454159583e-01, 4.787271023608e-03, 2.2556e-01, 1.4780e-03, + 2DIAGNOSTIC, 14, -8.857745179188e-01, 3.876578421568e-03, 2.2733e-01, 1.7691e-03, + 2DIAGNOSTIC, 15, -8.853337709501e-01, 2.855760517725e-03, 2.2876e-01, 1.4231e-03, + 2DIAGNOSTIC, 16, -8.850718954961e-01, 1.868500025759e-03, 2.3011e-01, 1.3499e-03, + 2DIAGNOSTIC, 17, -8.865887030463e-01, 1.189691551409e-03, 2.3170e-01, 1.5969e-03, + 2DIAGNOSTIC, 18, -8.870666018349e-01, 6.298725250065e-04, 2.3309e-01, 1.3831e-03, + 2DIAGNOSTIC, 19, -8.864075781539e-01, 2.141639626300e-04, 2.3463e-01, 1.5409e-03, + 2DIAGNOSTIC, 20, -8.873928939755e-01, 3.927264290394e-05, 2.3621e-01, 1.5860e-03, + 2DIAGNOSTIC, 21, -8.895731254442e-01, 7.581694202468e-05, 2.3839e-01, 2.1789e-03, + 2DIAGNOSTIC, 22, -8.903542415289e-01, 1.345038051001e-04, 2.4038e-01, 1.9929e-03, + 2DIAGNOSTIC, 23, -8.902569403816e-01, 1.774329339879e-04, 2.4278e-01, 2.3999e-03, + 2DIAGNOSTIC, 24, -8.897093321049e-01, 1.778597393266e-04, 2.4496e-01, 2.1710e-03, + 2DIAGNOSTIC, 25, -8.879125543359e-01, 1.328191151861e-04, 2.4719e-01, 2.2311e-03, + 2DIAGNOSTIC, 26, -8.890275243158e-01, 8.912055708879e-05, 2.4913e-01, 1.9441e-03, + 2DIAGNOSTIC, 27, -8.900263167906e-01, 6.992982846951e-05, 2.5081e-01, 1.6820e-03, + 2DIAGNOSTIC, 28, -8.901090296548e-01, 5.249091904670e-05, 2.5503e-01, 4.2210e-03, + 2DIAGNOSTIC, 29, -8.901418723494e-01, 2.499677541572e-05, 2.5648e-01, 1.4460e-03, + 2DIAGNOSTIC, 30, -8.904139778671e-01, 1.071490632769e-05, 2.5792e-01, 1.4381e-03, + 2DIAGNOSTIC, 31, -8.907426515283e-01, 2.232931889879e-05, 2.5971e-01, 1.7910e-03, + 2DIAGNOSTIC, 32, -8.909436040262e-01, 4.059076242820e-05, 2.6132e-01, 1.6060e-03, + 2DIAGNOSTIC, 33, -8.904248511088e-01, 4.797627147316e-05, 2.6284e-01, 1.5271e-03, + 2DIAGNOSTIC, 34, -8.907060012166e-01, 4.888230190526e-05, 2.6438e-01, 1.5361e-03, + 2DIAGNOSTIC, 35, -8.911063928093e-01, 3.185558684189e-05, 2.6585e-01, 1.4739e-03, + 2DIAGNOSTIC, 36, -8.916759075749e-01, 2.762753405466e-05, 2.6733e-01, 1.4801e-03, + 2DIAGNOSTIC, 37, -8.927718506807e-01, 3.944785136468e-05, 2.6910e-01, 1.7681e-03, + 2DIAGNOSTIC, 38, -8.914532275407e-01, 3.635873731888e-05, 2.7095e-01, 1.8480e-03, + 2DIAGNOSTIC, 39, -8.930171644232e-01, 4.381510353287e-05, 2.7242e-01, 1.4739e-03, + 2DIAGNOSTIC, 40, -8.932602215246e-01, 5.042350300588e-05, 2.7408e-01, 1.6561e-03, + 2DIAGNOSTIC, 41, -8.934174688815e-01, 5.556291742752e-05, 2.7600e-01, 1.9190e-03, + 2DIAGNOSTIC, 42, -8.934983480825e-01, 5.765820336581e-05, 2.7740e-01, 1.4000e-03, + 2DIAGNOSTIC, 43, -8.935798445212e-01, 5.108791023149e-05, 2.7885e-01, 1.4529e-03, + 2DIAGNOSTIC, 44, -8.937475580134e-01, 4.326193870716e-05, 2.8075e-01, 1.9009e-03, + 2DIAGNOSTIC, 45, -8.937869594922e-01, 3.462069902125e-05, 2.8224e-01, 1.4861e-03, + 2DIAGNOSTIC, 46, -8.939099709311e-01, 2.783103174887e-05, 2.8415e-01, 1.9119e-03, + 2DIAGNOSTIC, 47, -8.932949880900e-01, 2.245383782437e-05, 2.8560e-01, 1.4460e-03, + 2DIAGNOSTIC, 48, -8.933414626153e-01, 6.493951001697e-06, 2.8706e-01, 1.4620e-03, + 2DIAGNOSTIC, 49, -8.934846813815e-01, 1.821432833164e-06, 2.8842e-01, 1.3661e-03, + 2DIAGNOSTIC, 50, -8.946966871670e-01, 6.526913838178e-06, 2.9065e-01, 2.2240e-03, + 2DIAGNOSTIC, 51, -8.950918350949e-01, 1.378830643815e-05, 2.9202e-01, 1.3740e-03, + 2DIAGNOSTIC, 52, -8.951074107080e-01, 2.020103041604e-05, 2.9352e-01, 1.5001e-03, + 2DIAGNOSTIC, 53, -8.951407297756e-01, 2.532768955079e-05, 2.9508e-01, 1.5581e-03, + 2DIAGNOSTIC, 54, -8.952035102148e-01, 2.920093459112e-05, 2.9639e-01, 1.3120e-03, + 2DIAGNOSTIC, 55, -8.944946646680e-01, 2.605690185489e-05, 2.9794e-01, 1.5490e-03, + 2DIAGNOSTIC, 56, -8.945177104500e-01, 2.160051756655e-05, 3.0026e-01, 2.3160e-03, + 2DIAGNOSTIC, 57, -8.945355814562e-01, 1.195976224739e-05, 3.0166e-01, 1.4060e-03, + 2DIAGNOSTIC, 58, -8.945475705149e-01, 1.910880413094e-06, 3.0295e-01, 1.2851e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -7.781350298739e-01, 1.797693134862e+308, 5.2116e-01, 2.1821e-01, + 2DIAGNOSTIC, 2, -7.786287033689e-01, 1.797693134862e+308, 5.2365e-01, 2.4941e-03, + 2DIAGNOSTIC, 3, -7.808313347143e-01, 1.797693134862e+308, 5.2610e-01, 2.4512e-03, + 2DIAGNOSTIC, 4, -7.829698986513e-01, 1.797693134862e+308, 5.2862e-01, 2.5170e-03, + 2DIAGNOSTIC, 5, -7.871610941804e-01, 1.797693134862e+308, 5.3083e-01, 2.2089e-03, + 2DIAGNOSTIC, 6, -7.909236720151e-01, 1.797693134862e+308, 5.3333e-01, 2.4981e-03, + 2DIAGNOSTIC, 7, -7.933330794099e-01, 1.797693134862e+308, 5.3768e-01, 4.3468e-03, + 2DIAGNOSTIC, 8, -7.932771818049e-01, 1.797693134862e+308, 5.4001e-01, 2.3391e-03, + 2DIAGNOSTIC, 9, -7.933707621022e-01, 1.797693134862e+308, 5.4207e-01, 2.0528e-03, + 2DIAGNOSTIC, 10, -7.938970872578e-01, 1.549726593094e-03, 5.4460e-01, 2.5282e-03, + 2DIAGNOSTIC, 11, -7.941815607967e-01, 1.233412141182e-03, 5.4711e-01, 2.5160e-03, + 2DIAGNOSTIC, 12, -7.942170796411e-01, 8.751219343104e-04, 5.4946e-01, 2.3489e-03, + 2DIAGNOSTIC, 13, -7.947431555184e-01, 5.706625948607e-04, 5.5209e-01, 2.6338e-03, + 2DIAGNOSTIC, 14, -7.945519896718e-01, 3.072499555802e-04, 5.5445e-01, 2.3599e-03, + 2DIAGNOSTIC, 15, -7.948205874161e-01, 1.564909171873e-04, 5.5714e-01, 2.6841e-03, + 2DIAGNOSTIC, 16, -7.951290494851e-01, 1.003568428175e-04, 5.5940e-01, 2.2600e-03, + 2DIAGNOSTIC, 17, -7.951406888645e-01, 9.300848261853e-05, 5.6167e-01, 2.2740e-03, + 2DIAGNOSTIC, 18, -7.957330510767e-01, 8.893123225870e-05, 5.6394e-01, 2.2631e-03, + 2DIAGNOSTIC, 19, -7.956745658229e-01, 7.744851019798e-05, 5.6651e-01, 2.5709e-03, + 2DIAGNOSTIC, 20, -7.958598114321e-01, 7.295059485802e-05, 5.6880e-01, 2.2891e-03, + 2DIAGNOSTIC, 21, -7.962564595928e-01, 7.387831450192e-05, 5.7107e-01, 2.2762e-03, + 2DIAGNOSTIC, 22, -7.967217247418e-01, 7.570255026450e-05, 5.7334e-01, 2.2709e-03, + 2DIAGNOSTIC, 23, -7.974258088676e-01, 8.959106292599e-05, 5.7710e-01, 3.7580e-03, + 2DIAGNOSTIC, 24, -7.984900084772e-01, 1.068881596909e-04, 5.8067e-01, 3.5689e-03, + 2DIAGNOSTIC, 25, -8.003579180187e-01, 1.432641835777e-04, 5.8507e-01, 4.3960e-03, + 2DIAGNOSTIC, 26, -8.000694833720e-01, 1.632983521122e-04, 5.8738e-01, 2.3141e-03, + 2DIAGNOSTIC, 27, -7.995958306775e-01, 1.607310047679e-04, 5.9062e-01, 3.2411e-03, + 2DIAGNOSTIC, 28, -7.996071144952e-01, 1.514543032001e-04, 5.9321e-01, 2.5940e-03, + 2DIAGNOSTIC, 29, -7.994242507002e-01, 1.252642266836e-04, 5.9555e-01, 2.3310e-03, + 2DIAGNOSTIC, 30, -7.992468196041e-01, 8.881933949877e-05, 5.9784e-01, 2.2972e-03, + 2DIAGNOSTIC, 31, -7.994517901972e-01, 5.356003480460e-05, 6.0018e-01, 2.3341e-03, + 2DIAGNOSTIC, 32, -7.996616222710e-01, 2.333096259751e-05, 6.0293e-01, 2.7511e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.768193640841e-01, 1.797693134862e+308, 8.4387e-01, 2.4094e-01, + 2DIAGNOSTIC, 2, -6.784036759602e-01, 1.797693134862e+308, 8.5827e-01, 1.4403e-02, + 2DIAGNOSTIC, 3, -6.801594805354e-01, 1.797693134862e+308, 8.7143e-01, 1.3156e-02, + 2DIAGNOSTIC, 4, -6.812621594890e-01, 1.797693134862e+308, 8.8596e-01, 1.4525e-02, + 2DIAGNOSTIC, 5, -6.827031490511e-01, 1.797693134862e+308, 8.9886e-01, 1.2906e-02, + 2DIAGNOSTIC, 6, -6.845830206258e-01, 1.797693134862e+308, 9.1267e-01, 1.3811e-02, + 2DIAGNOSTIC, 7, -6.873978312659e-01, 1.797693134862e+308, 9.2762e-01, 1.4950e-02, + 2DIAGNOSTIC, 8, -6.907712344027e-01, 1.797693134862e+308, 9.4478e-01, 1.7161e-02, + 2DIAGNOSTIC, 9, -6.911890226346e-01, 1.797693134862e+308, 9.6017e-01, 1.5382e-02, + 2DIAGNOSTIC, 10, -6.914829411803e-01, 1.517031630457e-03, 9.7581e-01, 1.5648e-02, + 2DIAGNOSTIC, 11, -6.918926462926e-01, 1.307016983420e-03, 9.8915e-01, 1.3340e-02, + 2DIAGNOSTIC, 12, -6.927145540226e-01, 1.095646119042e-03, 1.0065e+00, 1.7348e-02, + 2DIAGNOSTIC, 13, -6.929857399903e-01, 8.809147293486e-04, 1.0201e+00, 1.3580e-02, + 2DIAGNOSTIC, 14, -6.931189740281e-01, 6.543745285194e-04, 1.0378e+00, 1.7715e-02, + 2DIAGNOSTIC, 15, -6.933334201971e-01, 4.455324127872e-04, 1.0587e+00, 2.0913e-02, + 2DIAGNOSTIC, 16, -6.933767433835e-01, 2.709053100985e-04, 1.0750e+00, 1.6248e-02, + 2DIAGNOSTIC, 17, -6.933688177384e-01, 1.580241519193e-04, 1.0910e+00, 1.6073e-02, + 2DIAGNOSTIC, 18, -6.933592979485e-01, 1.203998505915e-04, 1.1072e+00, 1.6196e-02, + 2DIAGNOSTIC, 19, -6.933460124544e-01, 8.470981244486e-05, 1.1215e+00, 1.4317e-02, + 2DIAGNOSTIC, 20, -6.933371893931e-01, 5.074993231494e-05, 1.1360e+00, 1.4445e-02, + 2DIAGNOSTIC, 21, -6.933355403761e-01, 2.309597175808e-05, 1.1522e+00, 1.6197e-02, + 2DIAGNOSTIC, 22, -6.933469201268e-01, 1.152201656528e-05, 1.1684e+00, 1.6237e-02, + 2DIAGNOSTIC, 23, -6.933342156736e-01, 4.637937681726e-06, 1.1846e+00, 1.6176e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.786366989915e-01, 1.797693134862e+308, 1.6137e+00, 4.2905e-01, + 2DIAGNOSTIC, 2, -5.793222150946e-01, 1.797693134862e+308, 1.7075e+00, 9.3843e-02, + 2DIAGNOSTIC, 3, -5.798057743518e-01, 1.797693134862e+308, 1.8012e+00, 9.3718e-02, + 2DIAGNOSTIC, 4, -5.801702908166e-01, 1.797693134862e+308, 1.8889e+00, 8.7714e-02, + 2DIAGNOSTIC, 5, -5.803526714136e-01, 1.797693134862e+308, 1.9727e+00, 8.3789e-02, + 2DIAGNOSTIC, 6, -5.804745841811e-01, 1.797693134862e+308, 2.0698e+00, 9.7081e-02, + 2DIAGNOSTIC, 7, -5.806155152406e-01, 1.797693134862e+308, 2.2286e+00, 1.5878e-01, + 2DIAGNOSTIC, 8, -5.806265582027e-01, 1.797693134862e+308, 2.3303e+00, 1.0173e-01, + 2DIAGNOSTIC, 9, -5.806210426355e-01, 1.797693134862e+308, 2.4334e+00, 1.0313e-01, + 2DIAGNOSTIC, 10, -5.806268876038e-01, 1.956741214197e-04, 2.5340e+00, 1.0052e-01, + 2DIAGNOSTIC, 11, -5.806261448444e-01, 1.137324855070e-04, 2.6347e+00, 1.0074e-01, + 2DIAGNOSTIC, 12, -5.806333947569e-01, 6.341616459256e-05, 2.7447e+00, 1.1002e-01, + 2DIAGNOSTIC, 13, -5.806354924973e-01, 3.339163958910e-05, 2.8416e+00, 9.6901e-02, + 2DIAGNOSTIC, 14, -5.806354823981e-01, 1.755132706636e-05, 2.9262e+00, 8.4562e-02, + 2DIAGNOSTIC, 15, -5.806340268459e-01, 8.286469427896e-06, 3.0244e+00, 9.8217e-02, + 2DIAGNOSTIC, 16, -5.806369403306e-01, 3.314724828674e-06, 3.1228e+00, 9.8445e-02, + 2DIAGNOSTIC, 17, -5.806475220387e-01, 3.156057855905e-06, 3.2264e+00, 1.0357e-01, + 2DIAGNOSTIC, 18, -5.806437363798e-01, 3.090142617394e-06, 3.3345e+00, 1.0810e-01, + 2DIAGNOSTIC, 19, -5.806476361702e-01, 2.872749562961e-06, 3.4305e+00, 9.6023e-02, + 2DIAGNOSTIC, 20, -5.806545606515e-01, 2.882665811575e-06, 3.5363e+00, 1.0575e-01, + 2DIAGNOSTIC, 21, -5.806754704002e-01, 3.230394946478e-06, 3.6584e+00, 1.2207e-01, + 2DIAGNOSTIC, 22, -5.806786879989e-01, 3.603552227505e-06, 3.7677e+00, 1.0938e-01, + 2DIAGNOSTIC, 23, -5.806797406743e-01, 3.816155200620e-06, 3.8637e+00, 9.5993e-02, + 2DIAGNOSTIC, 24, -5.806893650962e-01, 3.989793662694e-06, 3.9696e+00, 1.0586e-01, + 2DIAGNOSTIC, 25, -5.806926086438e-01, 3.925837068146e-06, 4.0646e+00, 9.4984e-02, + 2DIAGNOSTIC, 26, -5.806955731676e-01, 3.716007915940e-06, 4.1607e+00, 9.6085e-02, + 2DIAGNOSTIC, 27, -5.806963743291e-01, 3.497824100231e-06, 4.2574e+00, 9.6732e-02, + 2DIAGNOSTIC, 28, -5.807336206017e-01, 3.667014463582e-06, 4.3555e+00, 9.8139e-02, + 2DIAGNOSTIC, 29, -5.807721903281e-01, 4.284307559291e-06, 4.4680e+00, 1.1245e-01, + 2DIAGNOSTIC, 30, -5.807928237600e-01, 4.987815663944e-06, 4.5797e+00, 1.1176e-01, + 2DIAGNOSTIC, 31, -5.807886652673e-01, 5.546551830951e-06, 4.6925e+00, 1.1275e-01, + 2DIAGNOSTIC, 32, -5.807921705835e-01, 5.759746557546e-06, 4.8337e+00, 1.4125e-01, + 2DIAGNOSTIC, 33, -5.807914226474e-01, 5.500998925170e-06, 4.9492e+00, 1.1547e-01, + 2DIAGNOSTIC, 34, -5.807885089805e-01, 4.910219638710e-06, 5.0605e+00, 1.1132e-01, + 2DIAGNOSTIC, 35, -5.807856080352e-01, 3.982987324676e-06, 5.1895e+00, 1.2899e-01, + 2DIAGNOSTIC, 36, -5.807880735130e-01, 2.903381314114e-06, 5.3194e+00, 1.2985e-01, + 2DIAGNOSTIC, 37, -5.807862468824e-01, 1.670313555066e-06, 5.4280e+00, 1.0862e-01, + Elapsed time (stage 1): 5.5635e+00 + + +Total elapsed time: 1.2043e+01 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:55:39 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:55:40 EDT 2024: +COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  + +-------------------------------------------------------------------------------------- + Mapping parameters +-------------------------------------------------------------------------------------- + ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin + + Dimensionality: 3 + Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ + Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz + Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz + Mask images: + Initial transforms: + Number of threads: 10 + Spline distance: 26 + Transform type: s + CC radius: 4 + Precision: d + Use histogram matching 0 +====================================================================================== + antsRegistration call: +-------------------------------------------------------------------------------------- +/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox +-------------------------------------------------------------------------------------- +All_Command_lines_OK +Using double precision for computations. +============================================================================= +The composite transform comprises the following transforms (in order): + 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) +============================================================================= + number of levels = 4 + number of levels = 4 + number of levels = 4 + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz + fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz + moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz +Dimension = 3 +Number of stages = 3 +Use Histogram Matching false +Winsorize image intensities true +Lower quantile = 0.005 +Upper quantile = 0.995 +Stage 1 State + Image metric = Mattes + Fixed image = Image (0x55e8474744f0) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1727 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1512 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [111.551, 65.8168, -109.688] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e847479fa0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1509 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4436dec010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55e847475850) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 1728 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1725 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [111.551, 65.8168, -109.688] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e847472f30) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1722 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f443372d010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Rigid + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 2 State + Image metric = Mattes + Fixed image = Image (0x55e84748cb80) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2155 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 1940 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [111.551, 65.8168, -109.688] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e847479550) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 1937 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f443006e010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55e847491d70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2156 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2153 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [111.551, 65.8168, -109.688] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e84748fc00) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2150 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f442c9af010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = regular + Number of bins = 32 + Radius = 4 + Sampling percentage = 0.25 + Transform = Affine + Gradient step = 0.1 + Update field sigma (voxel space) = 0 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Stage 3 State + Image metric = CC + Fixed image = Image (0x55e847493f70) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2583 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2368 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [111.551, 65.8168, -109.688] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e8474923a0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2365 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f44292f0010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Moving image = Image (0x55e847494540) + RTTI typeinfo: itk::Image + Reference Count: 2 + Modified Time: 2584 + Debug: Off + Object Name: + Observers: + none + Source: (none) + Source output name: (none) + Release Data: Off + Data Released: False + Global Release Data: Off + PipelineMTime: 0 + UpdateMTime: 2581 + RealTimeStamp: 0 seconds + LargestPossibleRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + BufferedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + RequestedRegion: + Dimension: 3 + Index: [0, 0, 0] + Size: [224, 224, 143] + Spacing: [1, 1, 1] + Origin: [111.551, 65.8168, -109.688] + Direction: +-1 0 0 +0 -1 0 +0 0 1 + + IndexToPointMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + PointToIndexMatrix: +-1 0 0 +0 -1 0 +0 0 1 + + Inverse Direction: +-1 0 0 +0 -1 0 +0 0 1 + + PixelContainer: + ImportImageContainer (0x55e8474944d0) + RTTI typeinfo: itk::ImportImageContainer + Reference Count: 1 + Modified Time: 2578 + Debug: Off + Object Name: + Observers: + none + Pointer: 0x7f4425c31010 + Container manages memory: true + Size: 7175168 + Capacity: 7175168 + + Weighting = 1 + Sampling strategy = none + Number of bins = 32 + Radius = 4 + Sampling percentage = 1 + Transform = SyN + Gradient step = 0.1 + Update field sigma (voxel space) = 3 + Total field sigma (voxel space) = 0 + Update field time sigma = 0 + Total field time sigma = 0 + Number of time indices = 0 + Number of time point samples = 0 +Registration using 3 total stages. + +Stage 0 + iterations = 1000x500x250x100 + convergence threshold = 1e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 0.25) + +*** Running Euler3DTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.057587371540e-01, 1.797693134862e+308, 2.1710e-01, 2.1710e-01, + 2DIAGNOSTIC, 2, -6.093154662534e-01, 1.797693134862e+308, 2.1897e-01, 1.8699e-03, + 2DIAGNOSTIC, 3, -6.154835356281e-01, 1.797693134862e+308, 2.2079e-01, 1.8291e-03, + 2DIAGNOSTIC, 4, -6.252603400622e-01, 1.797693134862e+308, 2.2260e-01, 1.8070e-03, + 2DIAGNOSTIC, 5, -6.377656597441e-01, 1.797693134862e+308, 2.2449e-01, 1.8840e-03, + 2DIAGNOSTIC, 6, -6.473977598499e-01, 1.797693134862e+308, 2.2700e-01, 2.5151e-03, + 2DIAGNOSTIC, 7, -6.476144094815e-01, 1.797693134862e+308, 2.2888e-01, 1.8771e-03, + 2DIAGNOSTIC, 8, -6.476715401758e-01, 1.797693134862e+308, 2.3071e-01, 1.8280e-03, + 2DIAGNOSTIC, 9, -6.475124908419e-01, 1.797693134862e+308, 2.3259e-01, 1.8799e-03, + 2DIAGNOSTIC, 10, -6.477306130235e-01, 4.939479023189e-03, 2.3474e-01, 2.1579e-03, + 2DIAGNOSTIC, 11, -6.480226093947e-01, 3.552213223196e-03, 2.3681e-01, 2.0690e-03, + 2DIAGNOSTIC, 12, -6.492294175689e-01, 2.263721452805e-03, 2.3963e-01, 2.8210e-03, + 2DIAGNOSTIC, 13, -6.494986225464e-01, 1.194456653266e-03, 2.4681e-01, 7.1731e-03, + 2DIAGNOSTIC, 14, -6.494986208528e-01, 4.767139162796e-04, 2.4905e-01, 2.2440e-03, + 2DIAGNOSTIC, 15, -6.494986272964e-01, 1.766301019103e-04, 2.5126e-01, 2.2089e-03, + 2DIAGNOSTIC, 16, -6.494986381900e-01, 1.659755773992e-04, 2.5345e-01, 2.1858e-03, + 2DIAGNOSTIC, 17, -6.494986566037e-01, 1.465887730703e-04, 2.5563e-01, 2.1861e-03, + 2DIAGNOSTIC, 18, -6.494986877202e-01, 1.175121241551e-04, 2.5772e-01, 2.0878e-03, + 2DIAGNOSTIC, 19, -6.494987402783e-01, 7.748289974926e-05, 2.5999e-01, 2.2740e-03, + 2DIAGNOSTIC, 20, -6.494988289837e-01, 3.954054853708e-05, 2.6218e-01, 2.1882e-03, + 2DIAGNOSTIC, 21, -6.494989784997e-01, 7.225375595853e-06, 2.6433e-01, 2.1479e-03, + 2DIAGNOSTIC, 22, -6.494992298216e-01, 1.485239032747e-06, 2.6651e-01, 2.1849e-03, + 2DIAGNOSTIC, 23, -6.494996505647e-01, 1.434755422136e-06, 2.6867e-01, 2.1510e-03, + 2DIAGNOSTIC, 24, -6.495003534998e-01, 1.397908436541e-06, 2.7081e-01, 2.1431e-03, + 2DIAGNOSTIC, 25, -6.495015192427e-01, 1.379069086233e-06, 2.7290e-01, 2.0890e-03, + 2DIAGNOSTIC, 26, -6.495034076846e-01, 1.384816028627e-06, 2.7499e-01, 2.0969e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.456754662661e-01, 1.797693134862e+308, 4.9659e-01, 2.2160e-01, + 2DIAGNOSTIC, 2, -5.467733930698e-01, 1.797693134862e+308, 5.1130e-01, 1.4709e-02, + 2DIAGNOSTIC, 3, -5.473961990948e-01, 1.797693134862e+308, 5.2723e-01, 1.5934e-02, + 2DIAGNOSTIC, 4, -5.477281917377e-01, 1.797693134862e+308, 5.4117e-01, 1.3937e-02, + 2DIAGNOSTIC, 5, -5.478167987062e-01, 1.797693134862e+308, 5.5550e-01, 1.4333e-02, + 2DIAGNOSTIC, 6, -5.479516621552e-01, 1.797693134862e+308, 5.7050e-01, 1.4998e-02, + 2DIAGNOSTIC, 7, -5.479962210165e-01, 1.797693134862e+308, 5.8467e-01, 1.4165e-02, + 2DIAGNOSTIC, 8, -5.480722895910e-01, 1.797693134862e+308, 6.0005e-01, 1.5388e-02, + 2DIAGNOSTIC, 9, -5.481217913806e-01, 1.797693134862e+308, 6.1453e-01, 1.4480e-02, + 2DIAGNOSTIC, 10, -5.481243631376e-01, 2.237213183110e-04, 6.2922e-01, 1.4689e-02, + 2DIAGNOSTIC, 11, -5.481780846314e-01, 1.181934498992e-04, 6.5274e-01, 2.3518e-02, + 2DIAGNOSTIC, 12, -5.481829211718e-01, 6.698837766392e-05, 6.6738e-01, 1.4641e-02, + 2DIAGNOSTIC, 13, -5.481713639780e-01, 4.196514920206e-05, 6.8028e-01, 1.2898e-02, + 2DIAGNOSTIC, 14, -5.481600715217e-01, 2.881458101711e-05, 6.9321e-01, 1.2929e-02, + 2DIAGNOSTIC, 15, -5.481483902390e-01, 1.757855956830e-05, 7.0674e-01, 1.3528e-02, + 2DIAGNOSTIC, 16, -5.481362490849e-01, 1.029469919098e-05, 7.2007e-01, 1.3337e-02, + 2DIAGNOSTIC, 17, -5.481371248135e-01, 4.436569918172e-06, 7.3303e-01, 1.2952e-02, + 2DIAGNOSTIC, 18, -5.481377299217e-01, 1.183838625407e-06, 7.4887e-01, 1.5846e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.585621384141e-01, 1.797693134862e+308, 1.1113e+00, 3.6246e-01, + 2DIAGNOSTIC, 2, -4.592352385327e-01, 1.797693134862e+308, 1.2083e+00, 9.6936e-02, + 2DIAGNOSTIC, 3, -4.595714271950e-01, 1.797693134862e+308, 1.3042e+00, 9.5908e-02, + 2DIAGNOSTIC, 4, -4.596211851219e-01, 1.797693134862e+308, 1.3982e+00, 9.4036e-02, + 2DIAGNOSTIC, 5, -4.596785485160e-01, 1.797693134862e+308, 1.4930e+00, 9.4798e-02, + 2DIAGNOSTIC, 6, -4.597794534959e-01, 1.797693134862e+308, 1.6376e+00, 1.4463e-01, + 2DIAGNOSTIC, 7, -4.597731110869e-01, 1.797693134862e+308, 1.7974e+00, 1.5981e-01, + 2DIAGNOSTIC, 8, -4.597724624351e-01, 1.797693134862e+308, 1.9023e+00, 1.0487e-01, + 2DIAGNOSTIC, 9, -4.597733567768e-01, 1.797693134862e+308, 2.0059e+00, 1.0363e-01, + 2DIAGNOSTIC, 10, -4.597723312386e-01, 1.212448401672e-04, 2.1109e+00, 1.0492e-01, + 2DIAGNOSTIC, 11, -4.597714449824e-01, 5.131808305968e-05, 2.2188e+00, 1.0790e-01, + 2DIAGNOSTIC, 12, -4.597731570858e-01, 2.305361702878e-05, 2.3271e+00, 1.0832e-01, + 2DIAGNOSTIC, 13, -4.597708695773e-01, 1.322120036587e-05, 2.4368e+00, 1.0969e-01, + 2DIAGNOSTIC, 14, -4.597711232123e-01, 6.003618928455e-06, 2.5422e+00, 1.0546e-01, + 2DIAGNOSTIC, 15, -4.597712124869e-01, 1.654031877893e-06, 2.6471e+00, 1.0482e-01, + 2DIAGNOSTIC, 16, -4.597709590742e-01, 1.787301500231e-06, 2.7526e+00, 1.0554e-01, + 2DIAGNOSTIC, 17, -4.597709720207e-01, 1.693510664154e-06, 2.8595e+00, 1.0689e-01, + 2DIAGNOSTIC, 18, -4.597699415599e-01, 1.568127535996e-06, 2.9668e+00, 1.0730e-01, + 2DIAGNOSTIC, 19, -4.597683411022e-01, 1.453938779684e-06, 3.0603e+00, 9.3481e-02, + 2DIAGNOSTIC, 20, -4.597640423062e-01, 1.208343307559e-06, 3.1531e+00, 9.2794e-02, + 2DIAGNOSTIC, 21, -4.597671053315e-01, 1.086398206923e-06, 3.2580e+00, 1.0495e-01, + 2DIAGNOSTIC, 22, -4.597659588395e-01, 1.028915450389e-06, 3.3626e+00, 1.0455e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.972597676171e-01, 1.797693134862e+308, 4.8813e+00, 1.5187e+00, + 2DIAGNOSTIC, 2, -3.972623879221e-01, 1.797693134862e+308, 5.5112e+00, 6.2990e-01, + 2DIAGNOSTIC, 3, -3.972624997335e-01, 1.797693134862e+308, 6.1908e+00, 6.7968e-01, + 2DIAGNOSTIC, 4, -3.972626551455e-01, 1.797693134862e+308, 7.1374e+00, 9.4655e-01, + 2DIAGNOSTIC, 5, -3.972626367728e-01, 1.797693134862e+308, 7.7560e+00, 6.1865e-01, + 2DIAGNOSTIC, 6, -3.972625712413e-01, 1.797693134862e+308, 8.3373e+00, 5.8129e-01, + 2DIAGNOSTIC, 7, -3.972624764200e-01, 1.797693134862e+308, 8.8876e+00, 5.5027e-01, + 2DIAGNOSTIC, 8, -3.972621227669e-01, 1.797693134862e+308, 9.4947e+00, 6.0709e-01, + 2DIAGNOSTIC, 9, -3.972621981325e-01, 1.797693134862e+308, 1.0120e+01, 6.2530e-01, + 2DIAGNOSTIC, 10, -3.972621174904e-01, 3.311566718428e-06, 1.0743e+01, 6.2350e-01, + 2DIAGNOSTIC, 11, -3.972620491432e-01, 2.810567793762e-06, 1.1281e+01, 5.3768e-01, + 2DIAGNOSTIC, 12, -3.972618869799e-01, 2.547128736180e-06, 1.1891e+01, 6.0933e-01, + 2DIAGNOSTIC, 13, -3.972615631304e-01, 2.322067069141e-06, 1.2460e+01, 5.6968e-01, + 2DIAGNOSTIC, 14, -3.972615559856e-01, 2.148316124828e-06, 1.3053e+01, 5.9246e-01, + 2DIAGNOSTIC, 15, -3.972614256613e-01, 2.001465428197e-06, 1.3761e+01, 7.0790e-01, + 2DIAGNOSTIC, 16, -3.972614591300e-01, 1.882472681514e-06, 1.4324e+01, 5.6337e-01, + 2DIAGNOSTIC, 17, -3.972612216993e-01, 1.773698766520e-06, 1.4933e+01, 6.0919e-01, + 2DIAGNOSTIC, 18, -3.972611242113e-01, 1.668359462172e-06, 1.5475e+01, 5.4207e-01, + 2DIAGNOSTIC, 19, -3.972613536660e-01, 1.594789594890e-06, 1.6086e+01, 6.1125e-01, + 2DIAGNOSTIC, 20, -3.972614063814e-01, 1.534428335483e-06, 1.6708e+01, 6.2117e-01, + 2DIAGNOSTIC, 21, -3.972613119017e-01, 1.479529757334e-06, 1.7312e+01, 6.0419e-01, + 2DIAGNOSTIC, 22, -3.972612039766e-01, 1.424726423685e-06, 1.7816e+01, 5.0442e-01, + 2DIAGNOSTIC, 23, -3.972609758431e-01, 1.359614512898e-06, 1.8285e+01, 4.6856e-01, + 2DIAGNOSTIC, 24, -3.972610859919e-01, 1.305202114527e-06, 1.8857e+01, 5.7193e-01, + 2DIAGNOSTIC, 25, -3.972610929432e-01, 1.253095891524e-06, 1.9378e+01, 5.2117e-01, + 2DIAGNOSTIC, 26, -3.972608342968e-01, 1.200853562248e-06, 1.9904e+01, 5.2615e-01, + 2DIAGNOSTIC, 27, -3.972608449041e-01, 1.149096227851e-06, 2.0375e+01, 4.7078e-01, + 2DIAGNOSTIC, 28, -3.972607379968e-01, 1.098375592125e-06, 2.0926e+01, 5.5166e-01, + 2DIAGNOSTIC, 29, -3.972608525301e-01, 1.063038960060e-06, 2.1568e+01, 6.4198e-01, + 2DIAGNOSTIC, 30, -3.972605156302e-01, 1.026333072543e-06, 2.2107e+01, 5.3905e-01, + Elapsed time (stage 0): 2.2476e+01 + + +Stage 1 + iterations = 1000x500x250x100 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + regular sampling (percentage = 2.5000e-01) + +*** Running AffineTransform registration *** + +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -6.312877901407e-01, 1.797693134862e+308, 1.8198e-01, 1.8198e-01, + 2DIAGNOSTIC, 2, -6.326724137403e-01, 1.797693134862e+308, 1.8406e-01, 2.0761e-03, + 2DIAGNOSTIC, 3, -6.344782717655e-01, 1.797693134862e+308, 1.8606e-01, 2.0030e-03, + 2DIAGNOSTIC, 4, -6.364084102130e-01, 1.797693134862e+308, 1.8804e-01, 1.9751e-03, + 2DIAGNOSTIC, 5, -6.381154925617e-01, 1.797693134862e+308, 1.9003e-01, 1.9910e-03, + 2DIAGNOSTIC, 6, -6.396480042894e-01, 1.797693134862e+308, 1.9193e-01, 1.9071e-03, + 2DIAGNOSTIC, 7, -6.410897357987e-01, 1.797693134862e+308, 1.9381e-01, 1.8721e-03, + 2DIAGNOSTIC, 8, -6.431099381647e-01, 1.797693134862e+308, 1.9569e-01, 1.8802e-03, + 2DIAGNOSTIC, 9, -6.447969142335e-01, 1.797693134862e+308, 1.9812e-01, 2.4390e-03, + 2DIAGNOSTIC, 10, -6.461251931837e-01, 1.512766409966e-03, 2.0028e-01, 2.1589e-03, + 2DIAGNOSTIC, 11, -6.472494193864e-01, 1.344617713383e-03, 2.0317e-01, 2.8880e-03, + 2DIAGNOSTIC, 12, -6.482937742027e-01, 1.173323049250e-03, 2.0549e-01, 2.3179e-03, + 2DIAGNOSTIC, 13, -6.483700700784e-01, 9.855689750629e-04, 2.0765e-01, 2.1570e-03, + 2DIAGNOSTIC, 14, -6.489268885059e-01, 8.137567118585e-04, 2.1034e-01, 2.6939e-03, + 2DIAGNOSTIC, 15, -6.490739486563e-01, 6.450655945196e-04, 2.1269e-01, 2.3499e-03, + 2DIAGNOSTIC, 16, -6.492455769189e-01, 4.854980886298e-04, 2.1477e-01, 2.0750e-03, + 2DIAGNOSTIC, 17, -6.493382591943e-01, 3.394750366410e-04, 2.1732e-01, 2.5599e-03, + 2DIAGNOSTIC, 18, -6.494397420039e-01, 2.302650825045e-04, 2.1939e-01, 2.0690e-03, + 2DIAGNOSTIC, 19, -6.494138344705e-01, 1.497165275072e-04, 2.2147e-01, 2.0771e-03, + 2DIAGNOSTIC, 20, -6.493403702568e-01, 9.079578194525e-05, 2.2389e-01, 2.4230e-03, + 2DIAGNOSTIC, 21, -6.489358677051e-01, 4.392512199075e-05, 2.3114e-01, 7.2410e-03, + 2DIAGNOSTIC, 22, -6.489358191168e-01, 1.862099299323e-05, 2.3347e-01, 2.3379e-03, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -5.431822926051e-01, 1.797693134862e+308, 4.5033e-01, 2.1685e-01, + 2DIAGNOSTIC, 2, -5.440143827557e-01, 1.797693134862e+308, 4.6576e-01, 1.5433e-02, + 2DIAGNOSTIC, 3, -5.451898352408e-01, 1.797693134862e+308, 4.7947e-01, 1.3710e-02, + 2DIAGNOSTIC, 4, -5.467414113524e-01, 1.797693134862e+308, 4.9353e-01, 1.4060e-02, + 2DIAGNOSTIC, 5, -5.484732221757e-01, 1.797693134862e+308, 5.0756e-01, 1.4033e-02, + 2DIAGNOSTIC, 6, -5.504115425473e-01, 1.797693134862e+308, 5.2183e-01, 1.4267e-02, + 2DIAGNOSTIC, 7, -5.521487502892e-01, 1.797693134862e+308, 5.4408e-01, 2.2256e-02, + 2DIAGNOSTIC, 8, -5.525302469988e-01, 1.797693134862e+308, 5.5840e-01, 1.4318e-02, + 2DIAGNOSTIC, 9, -5.527361807450e-01, 1.797693134862e+308, 5.7477e-01, 1.6371e-02, + 2DIAGNOSTIC, 10, -5.530263268892e-01, 1.321683875026e-03, 5.9179e-01, 1.7013e-02, + 2DIAGNOSTIC, 11, -5.534207265597e-01, 1.067997089088e-03, 6.0787e-01, 1.6087e-02, + 2DIAGNOSTIC, 12, -5.536666556129e-01, 8.066110763196e-04, 6.2430e-01, 1.6425e-02, + 2DIAGNOSTIC, 13, -5.537297751918e-01, 5.622652931015e-04, 6.3915e-01, 1.4848e-02, + 2DIAGNOSTIC, 14, -5.537872609135e-01, 3.617270541754e-04, 6.5531e-01, 1.6162e-02, + 2DIAGNOSTIC, 15, -5.538490035198e-01, 2.159059331034e-04, 6.7557e-01, 2.0267e-02, + 2DIAGNOSTIC, 16, -5.538522068301e-01, 1.298184129755e-04, 6.9397e-01, 1.8397e-02, + 2DIAGNOSTIC, 17, -5.538526481762e-01, 9.464434628716e-05, 7.0791e-01, 1.3936e-02, + 2DIAGNOSTIC, 18, -5.538537095221e-01, 6.587538601794e-05, 7.2048e-01, 1.2577e-02, + 2DIAGNOSTIC, 19, -5.538572741362e-01, 3.987055063443e-05, 7.3323e-01, 1.2750e-02, + 2DIAGNOSTIC, 20, -5.538629328709e-01, 2.033167822682e-05, 7.4747e-01, 1.4236e-02, + 2DIAGNOSTIC, 21, -5.538719416126e-01, 1.067695334793e-05, 7.6201e-01, 1.4540e-02, + 2DIAGNOSTIC, 22, -5.539153035050e-01, 7.818693460254e-06, 7.7631e-01, 1.4301e-02, + 2DIAGNOSTIC, 23, -5.539580152460e-01, 6.941901416174e-06, 8.0018e-01, 2.3869e-02, + 2DIAGNOSTIC, 24, -5.539912739671e-01, 7.514892294370e-06, 8.1921e-01, 1.9030e-02, + 2DIAGNOSTIC, 25, -5.539957735181e-01, 8.827096360867e-06, 8.3399e-01, 1.4783e-02, + 2DIAGNOSTIC, 26, -5.540248704108e-01, 9.981353591274e-06, 8.5128e-01, 1.7287e-02, + 2DIAGNOSTIC, 27, -5.540336449447e-01, 1.038099088733e-05, 8.6665e-01, 1.5374e-02, + 2DIAGNOSTIC, 28, -5.540432062729e-01, 1.006647563243e-05, 8.8129e-01, 1.4631e-02, + 2DIAGNOSTIC, 29, -5.540575487780e-01, 9.252564536932e-06, 9.0017e-01, 1.8887e-02, + 2DIAGNOSTIC, 30, -5.540644866934e-01, 7.947040556767e-06, 9.1471e-01, 1.4534e-02, + 2DIAGNOSTIC, 31, -5.540700130252e-01, 6.305914531775e-06, 9.3693e-01, 2.2220e-02, + 2DIAGNOSTIC, 32, -5.540701294238e-01, 4.952670529093e-06, 9.5177e-01, 1.4846e-02, + 2DIAGNOSTIC, 33, -5.540703901512e-01, 3.968811728948e-06, 9.6617e-01, 1.4394e-02, + 2DIAGNOSTIC, 34, -5.540713345059e-01, 3.277772862378e-06, 9.8142e-01, 1.5252e-02, + 2DIAGNOSTIC, 35, -5.540734500951e-01, 2.489733107659e-06, 9.9553e-01, 1.4115e-02, + 2DIAGNOSTIC, 36, -5.540792555983e-01, 2.093268837888e-06, 1.0096e+00, 1.4113e-02, + 2DIAGNOSTIC, 37, -5.540863194312e-01, 1.821682072710e-06, 1.0257e+00, 1.6062e-02, + 2DIAGNOSTIC, 38, -5.540875596362e-01, 1.614586588795e-06, 1.0527e+00, 2.6961e-02, + 2DIAGNOSTIC, 39, -5.540875864299e-01, 1.533596159706e-06, 1.0817e+00, 2.9078e-02, + 2DIAGNOSTIC, 40, -5.540875864442e-01, 1.476509621824e-06, 1.1281e+00, 4.6361e-02, + 2DIAGNOSTIC, 41, -5.540875864442e-01, 1.425497603708e-06, 1.1454e+00, 1.7266e-02, + 2DIAGNOSTIC, 42, -5.540875864442e-01, 1.315194818469e-06, 1.1631e+00, 1.7723e-02, + 2DIAGNOSTIC, 43, -5.540875864442e-01, 1.160582046893e-06, 1.1795e+00, 1.6408e-02, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -4.585622515743e-01, 1.797693134862e+308, 1.5605e+00, 3.8096e-01, + 2DIAGNOSTIC, 2, -4.595963779037e-01, 1.797693134862e+308, 1.6599e+00, 9.9477e-02, + 2DIAGNOSTIC, 3, -4.606354770737e-01, 1.797693134862e+308, 1.7600e+00, 1.0007e-01, + 2DIAGNOSTIC, 4, -4.612746723212e-01, 1.797693134862e+308, 1.8601e+00, 1.0008e-01, + 2DIAGNOSTIC, 5, -4.615861687453e-01, 1.797693134862e+308, 1.9598e+00, 9.9716e-02, + 2DIAGNOSTIC, 6, -4.620799992883e-01, 1.797693134862e+308, 2.0860e+00, 1.2618e-01, + 2DIAGNOSTIC, 7, -4.621850466277e-01, 1.797693134862e+308, 2.1762e+00, 9.0234e-02, + 2DIAGNOSTIC, 8, -4.622505601027e-01, 1.797693134862e+308, 2.2663e+00, 9.0082e-02, + 2DIAGNOSTIC, 9, -4.623697504919e-01, 1.797693134862e+308, 2.3589e+00, 9.2609e-02, + 2DIAGNOSTIC, 10, -4.627151998642e-01, 5.093676578982e-04, 2.5091e+00, 1.5022e-01, + 2DIAGNOSTIC, 11, -4.631564073371e-01, 3.653057663304e-04, 2.6202e+00, 1.1107e-01, + 2DIAGNOSTIC, 12, -4.631615153503e-01, 2.647608510442e-04, 2.7170e+00, 9.6832e-02, + 2DIAGNOSTIC, 13, -4.631398877763e-01, 2.043573029925e-04, 2.8812e+00, 1.6412e-01, + 2DIAGNOSTIC, 14, -4.631388753776e-01, 1.624580691537e-04, 2.9880e+00, 1.0684e-01, + 2DIAGNOSTIC, 15, -4.631364466255e-01, 1.233997264487e-04, 3.0846e+00, 9.6618e-02, + 2DIAGNOSTIC, 16, -4.631406781925e-01, 9.690689539331e-05, 3.2400e+00, 1.5540e-01, + 2DIAGNOSTIC, 17, -4.631357585571e-01, 6.854581704937e-05, 3.3433e+00, 1.0324e-01, + 2DIAGNOSTIC, 18, -4.631351538054e-01, 3.969075616693e-05, 3.4579e+00, 1.1469e-01, + 2DIAGNOSTIC, 19, -4.631345477616e-01, 1.406231261868e-05, 3.5619e+00, 1.0396e-01, +DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 2DIAGNOSTIC, 1, -3.989597480685e-01, 1.797693134862e+308, 4.8528e+00, 1.2909e+00, + 2DIAGNOSTIC, 2, -3.991460357559e-01, 1.797693134862e+308, 5.5130e+00, 6.6022e-01, + 2DIAGNOSTIC, 3, -3.991511125887e-01, 1.797693134862e+308, 6.6514e+00, 1.1384e+00, + 2DIAGNOSTIC, 4, -3.991484201144e-01, 1.797693134862e+308, 7.2554e+00, 6.0394e-01, + 2DIAGNOSTIC, 5, -3.991475326960e-01, 1.797693134862e+308, 8.0917e+00, 8.3634e-01, + 2DIAGNOSTIC, 6, -3.991472038264e-01, 1.797693134862e+308, 8.8225e+00, 7.3077e-01, + 2DIAGNOSTIC, 7, -3.991470824120e-01, 1.797693134862e+308, 9.6279e+00, 8.0547e-01, + 2DIAGNOSTIC, 8, -3.991469202146e-01, 1.797693134862e+308, 1.0322e+01, 6.9365e-01, + 2DIAGNOSTIC, 9, -3.991469059596e-01, 1.797693134862e+308, 1.0941e+01, 6.1962e-01, + 2DIAGNOSTIC, 10, -3.991470023224e-01, 1.631123189205e-05, 1.1594e+01, 6.5276e-01, + 2DIAGNOSTIC, 11, -3.991472223522e-01, 2.647686651841e-06, 1.2197e+01, 6.0279e-01, + 2DIAGNOSTIC, 12, -3.991476169421e-01, 2.349470635710e-06, 1.3188e+01, 9.9159e-01, + 2DIAGNOSTIC, 13, -3.991476383471e-01, 2.406749082529e-06, 1.3872e+01, 6.8331e-01, + 2DIAGNOSTIC, 14, -3.991475997494e-01, 2.322003237507e-06, 1.4474e+01, 6.0258e-01, + 2DIAGNOSTIC, 15, -3.991473405626e-01, 2.190090394885e-06, 1.5137e+01, 6.6271e-01, + 2DIAGNOSTIC, 16, -3.991472293674e-01, 2.048856890827e-06, 1.5753e+01, 6.1611e-01, + 2DIAGNOSTIC, 17, -3.991470958114e-01, 1.907886744153e-06, 1.6361e+01, 6.0757e-01, + 2DIAGNOSTIC, 18, -3.991470910052e-01, 1.772654653884e-06, 1.7014e+01, 6.5386e-01, + 2DIAGNOSTIC, 19, -3.991472173261e-01, 1.655529856232e-06, 1.7589e+01, 5.7439e-01, + 2DIAGNOSTIC, 20, -3.991471347188e-01, 1.552271626494e-06, 1.8259e+01, 6.6966e-01, + 2DIAGNOSTIC, 21, -3.991470926503e-01, 1.468292698821e-06, 1.8844e+01, 5.8557e-01, + 2DIAGNOSTIC, 22, -3.991473741804e-01, 1.418161588426e-06, 1.9601e+01, 7.5651e-01, + 2DIAGNOSTIC, 23, -3.991473974246e-01, 1.375948752234e-06, 2.0365e+01, 7.6478e-01, + 2DIAGNOSTIC, 24, -3.991473425771e-01, 1.335271956039e-06, 2.1051e+01, 6.8609e-01, + 2DIAGNOSTIC, 25, -3.991471793703e-01, 1.285152251805e-06, 2.1662e+01, 6.1075e-01, + 2DIAGNOSTIC, 26, -3.991472560294e-01, 1.237023307225e-06, 2.2423e+01, 7.6119e-01, + 2DIAGNOSTIC, 27, -3.991472305100e-01, 1.186740406757e-06, 2.2982e+01, 5.5824e-01, + 2DIAGNOSTIC, 28, -3.991469933771e-01, 1.132895857237e-06, 2.3633e+01, 6.5173e-01, + 2DIAGNOSTIC, 29, -3.991470876029e-01, 1.088865051568e-06, 2.4316e+01, 6.8300e-01, + 2DIAGNOSTIC, 30, -3.991468521944e-01, 1.041022518258e-06, 2.5047e+01, 7.3092e-01, + Elapsed time (stage 1): 2.5431e+01 + + +Stage 2 + iterations = 100x70x50x20 + convergence threshold = 1.0000e-06 + convergence window size = 10 + number of levels = 4 + using the CC metric (radius = 4, weight = 1.0000e+00) + preprocessing: winsorizing the image intensities + Shrink factors (level 1 out of 4): [8, 8, 8] + Shrink factors (level 2 out of 4): [4, 4, 4] + Shrink factors (level 3 out of 4): [2, 2, 2] + Shrink factors (level 4 out of 4): [1, 1, 1] + smoothing sigmas per level: [3, 2, 1, 0] + Using default NONE metricSamplingStrategy + +*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** + +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.034574767590e-01, 1.797693134862e+308, 2.5613e-01, 2.5613e-01, + 1DIAGNOSTIC, 2, -9.124696178343e-01, 1.797693134862e+308, 3.7615e-01, 1.2001e-01, + 1DIAGNOSTIC, 3, -9.204296790382e-01, 1.797693134862e+308, 4.7337e-01, 9.7223e-02, + 1DIAGNOSTIC, 4, -9.277939755176e-01, 1.797693134862e+308, 5.6740e-01, 9.4035e-02, + 1DIAGNOSTIC, 5, -9.328878671361e-01, 1.797693134862e+308, 6.6589e-01, 9.8492e-02, + 1DIAGNOSTIC, 6, -9.378836211370e-01, 1.797693134862e+308, 7.6928e-01, 1.0338e-01, + 1DIAGNOSTIC, 7, -9.415115607689e-01, 1.797693134862e+308, 8.9693e-01, 1.2765e-01, + 1DIAGNOSTIC, 8, -9.447088735454e-01, 1.797693134862e+308, 9.9401e-01, 9.7081e-02, + 1DIAGNOSTIC, 9, -9.475688521859e-01, 1.797693134862e+308, 1.0894e+00, 9.5370e-02, + 1DIAGNOSTIC, 10, -9.501130287309e-01, 3.101668295718e-03, 1.1853e+00, 9.5969e-02, + 1DIAGNOSTIC, 11, -9.522273086015e-01, 2.374064783220e-03, 1.2882e+00, 1.0284e-01, + 1DIAGNOSTIC, 12, -9.539125476269e-01, 1.824956513606e-03, 1.3914e+00, 1.0317e-01, + 1DIAGNOSTIC, 13, -9.552684486241e-01, 1.411839740607e-03, 1.4921e+00, 1.0075e-01, + 1DIAGNOSTIC, 14, -9.564013835128e-01, 1.112993148923e-03, 1.5979e+00, 1.0584e-01, + 1DIAGNOSTIC, 15, -9.570965278739e-01, 8.681733752208e-04, 1.6959e+00, 9.7907e-02, + 1DIAGNOSTIC, 16, -9.570743814127e-01, 6.680568297195e-04, 1.7964e+00, 1.0057e-01, + 1DIAGNOSTIC, 17, -9.568343314020e-01, 4.902457756637e-04, 1.8959e+00, 9.9430e-02, + 1DIAGNOSTIC, 18, -9.568641503265e-01, 3.409407801345e-04, 1.9958e+00, 9.9986e-02, + 1DIAGNOSTIC, 19, -9.567353901991e-01, 2.186847329350e-04, 2.0982e+00, 1.0234e-01, + 1DIAGNOSTIC, 20, -9.567730444711e-01, 1.270297201554e-04, 2.1964e+00, 9.8208e-02, + 1DIAGNOSTIC, 21, -9.566819475309e-01, 6.128804993154e-05, 2.2966e+00, 1.0023e-01, + 1DIAGNOSTIC, 22, -9.567405010491e-01, 1.973562619397e-05, 2.3965e+00, 9.9828e-02, + 1DIAGNOSTIC, 23, -9.566809586329e-01, -3.264792428397e-06, 2.4988e+00, 1.0235e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.184563924849e-01, 1.797693134862e+308, 3.3145e+00, 8.1568e-01, + 1DIAGNOSTIC, 2, -9.223950033101e-01, 1.797693134862e+308, 3.9771e+00, 6.6261e-01, + 1DIAGNOSTIC, 3, -9.261379627302e-01, 1.797693134862e+308, 4.6432e+00, 6.6615e-01, + 1DIAGNOSTIC, 4, -9.290462636224e-01, 1.797693134862e+308, 5.3240e+00, 6.8074e-01, + 1DIAGNOSTIC, 5, -9.314011702049e-01, 1.797693134862e+308, 5.9698e+00, 6.4585e-01, + 1DIAGNOSTIC, 6, -9.333398060929e-01, 1.797693134862e+308, 6.6591e+00, 6.8927e-01, + 1DIAGNOSTIC, 7, -9.348770080004e-01, 1.797693134862e+308, 7.3495e+00, 6.9043e-01, + 1DIAGNOSTIC, 8, -9.361105130455e-01, 1.797693134862e+308, 8.0392e+00, 6.8962e-01, + 1DIAGNOSTIC, 9, -9.371956137093e-01, 1.797693134862e+308, 8.7296e+00, 6.9041e-01, + 1DIAGNOSTIC, 10, -9.381587539545e-01, 1.306386768498e-03, 9.4419e+00, 7.1235e-01, + 1DIAGNOSTIC, 11, -9.390267776723e-01, 9.822641849338e-04, 1.0122e+01, 6.8007e-01, + 1DIAGNOSTIC, 12, -9.398194966820e-01, 7.432686453057e-04, 1.0825e+01, 7.0298e-01, + 1DIAGNOSTIC, 13, -9.405450483457e-01, 5.780074669001e-04, 1.1509e+01, 6.8408e-01, + 1DIAGNOSTIC, 14, -9.412131698889e-01, 4.611266634507e-04, 1.2182e+01, 6.7258e-01, + 1DIAGNOSTIC, 15, -9.418382706862e-01, 3.777553773924e-04, 1.2860e+01, 6.7867e-01, + 1DIAGNOSTIC, 16, -9.424291992192e-01, 3.179475080654e-04, 1.3541e+01, 6.8025e-01, + 1DIAGNOSTIC, 17, -9.429595005030e-01, 2.726832789626e-04, 1.4210e+01, 6.6910e-01, + 1DIAGNOSTIC, 18, -9.434748124575e-01, 2.366416410788e-04, 1.4883e+01, 6.7319e-01, + 1DIAGNOSTIC, 19, -9.439578657429e-01, 2.074202302213e-04, 1.5565e+01, 6.8190e-01, + 1DIAGNOSTIC, 20, -9.444113589511e-01, 1.832616475985e-04, 1.6242e+01, 6.7713e-01, + 1DIAGNOSTIC, 21, -9.448375015026e-01, 1.629678686422e-04, 1.6920e+01, 6.7839e-01, + 1DIAGNOSTIC, 22, -9.452382066343e-01, 1.457154279372e-04, 1.7603e+01, 6.8244e-01, + 1DIAGNOSTIC, 23, -9.456273750479e-01, 1.309971830249e-04, 1.8284e+01, 6.8090e-01, + 1DIAGNOSTIC, 24, -9.459751677804e-01, 1.180290940724e-04, 1.8961e+01, 6.7702e-01, + 1DIAGNOSTIC, 25, -9.463066896576e-01, 1.065986002202e-04, 1.9636e+01, 6.7555e-01, + 1DIAGNOSTIC, 26, -9.466181969352e-01, 9.654048701496e-05, 2.0344e+01, 7.0815e-01, + 1DIAGNOSTIC, 27, -9.469041990267e-01, 8.729163721084e-05, 2.1026e+01, 6.8117e-01, + 1DIAGNOSTIC, 28, -9.471731014964e-01, 7.895879706389e-05, 2.1710e+01, 6.8464e-01, + 1DIAGNOSTIC, 29, -9.474253702874e-01, 7.143449836801e-05, 2.2395e+01, 6.8449e-01, + 1DIAGNOSTIC, 30, -9.476590304927e-01, 6.461010494212e-05, 2.3074e+01, 6.7968e-01, + 1DIAGNOSTIC, 31, -9.478770461339e-01, 5.842127837359e-05, 2.3747e+01, 6.7304e-01, + 1DIAGNOSTIC, 32, -9.480900590874e-01, 5.290858171211e-05, 2.4414e+01, 6.6670e-01, + 1DIAGNOSTIC, 33, -9.482874160283e-01, 4.811634736943e-05, 2.5093e+01, 6.7929e-01, + 1DIAGNOSTIC, 34, -9.484666123067e-01, 4.375615789003e-05, 2.5769e+01, 6.7530e-01, + 1DIAGNOSTIC, 35, -9.486335805108e-01, 3.982929637670e-05, 2.6441e+01, 6.7270e-01, + 1DIAGNOSTIC, 36, -9.487901096811e-01, 3.630155195726e-05, 2.7132e+01, 6.9082e-01, + 1DIAGNOSTIC, 37, -9.489378304597e-01, 3.309027742875e-05, 2.7819e+01, 6.8703e-01, + 1DIAGNOSTIC, 38, -9.490789719335e-01, 3.019605034692e-05, 2.8500e+01, 6.8081e-01, + 1DIAGNOSTIC, 39, -9.492130975817e-01, 2.760802234176e-05, 2.9179e+01, 6.7916e-01, + 1DIAGNOSTIC, 40, -9.493414698333e-01, 2.529488850778e-05, 2.9872e+01, 6.9278e-01, + 1DIAGNOSTIC, 41, -9.494638760025e-01, 2.323090380658e-05, 3.0552e+01, 6.8045e-01, + 1DIAGNOSTIC, 42, -9.495811284448e-01, 2.146457301791e-05, 3.1235e+01, 6.8213e-01, + 1DIAGNOSTIC, 43, -9.496932084902e-01, 1.994690496123e-05, 3.1925e+01, 6.9005e-01, + 1DIAGNOSTIC, 44, -9.498013846635e-01, 1.860823014399e-05, 3.2607e+01, 6.8256e-01, + 1DIAGNOSTIC, 45, -9.499132173999e-01, 1.746477337498e-05, 3.3288e+01, 6.8105e-01, + 1DIAGNOSTIC, 46, -9.500039823192e-01, 1.636660287823e-05, 3.3959e+01, 6.7088e-01, + 1DIAGNOSTIC, 47, -9.501089869801e-01, 1.541876823516e-05, 3.4640e+01, 6.8070e-01, + 1DIAGNOSTIC, 48, -9.501987910920e-01, 1.452948535518e-05, 3.5314e+01, 6.7375e-01, + 1DIAGNOSTIC, 49, -9.502887768076e-01, 1.370944334902e-05, 3.5990e+01, 6.7680e-01, + 1DIAGNOSTIC, 50, -9.503761818136e-01, 1.295483903197e-05, 3.6669e+01, 6.7914e-01, + 1DIAGNOSTIC, 51, -9.504607361441e-01, 1.225642808505e-05, 3.7342e+01, 6.7276e-01, + 1DIAGNOSTIC, 52, -9.505390874253e-01, 1.158828277332e-05, 3.8013e+01, 6.7074e-01, + 1DIAGNOSTIC, 53, -9.506213060725e-01, 1.098326130307e-05, 3.8688e+01, 6.7513e-01, + 1DIAGNOSTIC, 54, -9.507004688468e-01, 1.043433825486e-05, 3.9378e+01, 6.8950e-01, + 1DIAGNOSTIC, 55, -9.507876861949e-01, 1.003893585534e-05, 4.0063e+01, 6.8570e-01, + 1DIAGNOSTIC, 56, -9.508654000497e-01, 9.640281670591e-06, 4.0741e+01, 6.7738e-01, + 1DIAGNOSTIC, 57, -9.509331783377e-01, 9.286550334772e-06, 4.1428e+01, 6.8732e-01, + 1DIAGNOSTIC, 58, -9.510091758732e-01, 8.957791531761e-06, 4.2101e+01, 6.7288e-01, + 1DIAGNOSTIC, 59, -9.510847679941e-01, 8.664821708422e-06, 4.2776e+01, 6.7528e-01, + 1DIAGNOSTIC, 60, -9.511571447671e-01, 8.389909656549e-06, 4.3445e+01, 6.6930e-01, + 1DIAGNOSTIC, 61, -9.512254816316e-01, 8.113426207421e-06, 4.4126e+01, 6.8053e-01, + 1DIAGNOSTIC, 62, -9.512945084435e-01, 7.823085919428e-06, 4.4801e+01, 6.7545e-01, + 1DIAGNOSTIC, 63, -9.513620861370e-01, 7.545456936566e-06, 4.5478e+01, 6.7665e-01, + 1DIAGNOSTIC, 64, -9.514282712608e-01, 7.271220786281e-06, 4.6167e+01, 6.8896e-01, + 1DIAGNOSTIC, 65, -9.514932270205e-01, 7.048586589259e-06, 4.6837e+01, 6.6992e-01, + 1DIAGNOSTIC, 66, -9.515534429620e-01, 6.822966261370e-06, 4.7512e+01, 6.7548e-01, + 1DIAGNOSTIC, 67, -9.516099328138e-01, 6.543749299443e-06, 4.8180e+01, 6.6712e-01, + 1DIAGNOSTIC, 68, -9.516789246688e-01, 6.321778284652e-06, 4.8857e+01, 6.7765e-01, + 1DIAGNOSTIC, 69, -9.517395362491e-01, 6.126640501664e-06, 4.9535e+01, 6.7744e-01, + 1DIAGNOSTIC, 70, -9.517907930303e-01, 5.915175738610e-06, 5.0218e+01, 6.8334e-01, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.165162766222e-01, 1.797693134862e+308, 5.5889e+01, 5.6710e+00, + 1DIAGNOSTIC, 2, -9.187373101869e-01, 1.797693134862e+308, 6.1249e+01, 5.3603e+00, + 1DIAGNOSTIC, 3, -9.207691652366e-01, 1.797693134862e+308, 6.6630e+01, 5.3806e+00, + 1DIAGNOSTIC, 4, -9.226098693887e-01, 1.797693134862e+308, 7.1980e+01, 5.3504e+00, + 1DIAGNOSTIC, 5, -9.242380947421e-01, 1.797693134862e+308, 7.7425e+01, 5.4445e+00, + 1DIAGNOSTIC, 6, -9.256096086364e-01, 1.797693134862e+308, 8.2835e+01, 5.4105e+00, + 1DIAGNOSTIC, 7, -9.268527513521e-01, 1.797693134862e+308, 8.8227e+01, 5.3913e+00, + 1DIAGNOSTIC, 8, -9.279974419365e-01, 1.797693134862e+308, 9.3605e+01, 5.3788e+00, + 1DIAGNOSTIC, 9, -9.290574402146e-01, 1.797693134862e+308, 9.9082e+01, 5.4771e+00, + 1DIAGNOSTIC, 10, -9.300610091914e-01, 9.208654893571e-04, 1.0451e+02, 5.4250e+00, + 1DIAGNOSTIC, 11, -9.309128026689e-01, 7.510460355000e-04, 1.0993e+02, 5.4250e+00, + 1DIAGNOSTIC, 12, -9.317328927755e-01, 6.195507341274e-04, 1.1537e+02, 5.4415e+00, + 1DIAGNOSTIC, 13, -9.325204735784e-01, 5.184393476414e-04, 1.2075e+02, 5.3763e+00, + 1DIAGNOSTIC, 14, -9.332836836978e-01, 4.412992421525e-04, 1.2615e+02, 5.4036e+00, + 1DIAGNOSTIC, 15, -9.340217786108e-01, 3.822152254827e-04, 1.3161e+02, 5.4580e+00, + 1DIAGNOSTIC, 16, -9.347529665124e-01, 3.355112643270e-04, 1.3704e+02, 5.4242e+00, + 1DIAGNOSTIC, 17, -9.354744770702e-01, 2.986174220144e-04, 1.4246e+02, 5.4259e+00, + 1DIAGNOSTIC, 18, -9.361876458569e-01, 2.696414249353e-04, 1.4790e+02, 5.4337e+00, + 1DIAGNOSTIC, 19, -9.368932645553e-01, 2.469743633397e-04, 1.5334e+02, 5.4433e+00, + 1DIAGNOSTIC, 20, -9.375969383639e-01, 2.296082707477e-04, 1.5876e+02, 5.4204e+00, + 1DIAGNOSTIC, 21, -9.382947496418e-01, 2.149465540722e-04, 1.6418e+02, 5.4181e+00, + 1DIAGNOSTIC, 22, -9.389898158341e-01, 2.024854328044e-04, 1.6963e+02, 5.4479e+00, + 1DIAGNOSTIC, 23, -9.396691360592e-01, 1.915450814101e-04, 1.7506e+02, 5.4299e+00, + 1DIAGNOSTIC, 24, -9.403342819776e-01, 1.816489604595e-04, 1.8043e+02, 5.3791e+00, + 1DIAGNOSTIC, 25, -9.409714709019e-01, 1.721985545105e-04, 1.8584e+02, 5.4015e+00, + 1DIAGNOSTIC, 26, -9.415818568738e-01, 1.629521570984e-04, 1.9126e+02, 5.4233e+00, + 1DIAGNOSTIC, 27, -9.421694475483e-01, 1.537664981232e-04, 1.9668e+02, 5.4244e+00, + 1DIAGNOSTIC, 28, -9.427203046952e-01, 1.444394532428e-04, 2.0208e+02, 5.3995e+00, + 1DIAGNOSTIC, 29, -9.432179199064e-01, 1.347116684936e-04, 2.0755e+02, 5.4690e+00, + 1DIAGNOSTIC, 30, -9.436675616000e-01, 1.245735087769e-04, 2.1298e+02, 5.4315e+00, + 1DIAGNOSTIC, 31, -9.440708918330e-01, 1.140874094701e-04, 2.1842e+02, 5.4391e+00, + 1DIAGNOSTIC, 32, -9.444322752716e-01, 1.034734436051e-04, 2.2384e+02, 5.4132e+00, + 1DIAGNOSTIC, 33, -9.447514874099e-01, 9.287822886034e-05, 2.2928e+02, 5.4483e+00, + 1DIAGNOSTIC, 34, -9.450341787802e-01, 8.256310792997e-05, 2.3466e+02, 5.3753e+00, + 1DIAGNOSTIC, 35, -9.452862454276e-01, 7.272088635209e-05, 2.4011e+02, 5.4528e+00, + 1DIAGNOSTIC, 36, -9.455112338099e-01, 6.356788007702e-05, 2.4559e+02, 5.4823e+00, + 1DIAGNOSTIC, 37, -9.457125851541e-01, 5.534705298408e-05, 2.5106e+02, 5.4633e+00, + 1DIAGNOSTIC, 38, -9.458990286948e-01, 4.819720557540e-05, 2.5655e+02, 5.4878e+00, + 1DIAGNOSTIC, 39, -9.460671665234e-01, 4.202477964348e-05, 2.6204e+02, 5.4921e+00, + 1DIAGNOSTIC, 40, -9.462256830294e-01, 3.679457759945e-05, 2.6759e+02, 5.5532e+00, + 1DIAGNOSTIC, 41, -9.463695819970e-01, 3.238795766988e-05, 2.7304e+02, 5.4522e+00, + 1DIAGNOSTIC, 42, -9.465070830505e-01, 2.873640849642e-05, 2.7857e+02, 5.5238e+00, + 1DIAGNOSTIC, 43, -9.466322392047e-01, 2.568006907814e-05, 2.8396e+02, 5.3912e+00, + 1DIAGNOSTIC, 44, -9.467469584298e-01, 2.308609127524e-05, 2.8933e+02, 5.3764e+00, + 1DIAGNOSTIC, 45, -9.468536491212e-01, 2.085852344854e-05, 2.9477e+02, 5.4394e+00, + 1DIAGNOSTIC, 46, -9.469542974244e-01, 1.892124064916e-05, 3.0021e+02, 5.4314e+00, + 1DIAGNOSTIC, 47, -9.470488686093e-01, 1.720661960464e-05, 3.0562e+02, 5.4108e+00, + 1DIAGNOSTIC, 48, -9.471386922723e-01, 1.570442103025e-05, 3.1105e+02, 5.4370e+00, + 1DIAGNOSTIC, 49, -9.472254370144e-01, 1.437987326183e-05, 3.1652e+02, 5.4638e+00, + 1DIAGNOSTIC, 50, -9.473040570982e-01, 1.321230765222e-05, 3.2207e+02, 5.5547e+00, +XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST + 1DIAGNOSTIC, 1, -9.183418607669e-01, 1.797693134862e+308, 3.6903e+02, 4.6963e+01, + 1DIAGNOSTIC, 2, -9.190829203859e-01, 1.797693134862e+308, 4.1387e+02, 4.4832e+01, + 1DIAGNOSTIC, 3, -9.202785251920e-01, 1.797693134862e+308, 4.5787e+02, 4.4001e+01, + 1DIAGNOSTIC, 4, -9.215689034947e-01, 1.797693134862e+308, 5.0214e+02, 4.4272e+01, + 1DIAGNOSTIC, 5, -9.228517820073e-01, 1.797693134862e+308, 5.4723e+02, 4.5091e+01, + 1DIAGNOSTIC, 6, -9.240888821385e-01, 1.797693134862e+308, 5.9409e+02, 4.6859e+01, + 1DIAGNOSTIC, 7, -9.252809366725e-01, 1.797693134862e+308, 6.4113e+02, 4.7044e+01, + 1DIAGNOSTIC, 8, -9.264367354358e-01, 1.797693134862e+308, 6.8798e+02, 4.6850e+01, + 1DIAGNOSTIC, 9, -9.274172204838e-01, 1.797693134862e+308, 7.3370e+02, 4.5720e+01, + 1DIAGNOSTIC, 10, -9.282514354548e-01, 7.250200740077e-04, 7.7959e+02, 4.5886e+01, + 1DIAGNOSTIC, 11, -9.288784748083e-01, 6.387843034637e-04, 8.2408e+02, 4.4492e+01, + 1DIAGNOSTIC, 12, -9.293784507548e-01, 5.412967221997e-04, 8.7022e+02, 4.6142e+01, + 1DIAGNOSTIC, 13, -9.297792777695e-01, 4.474734165237e-04, 9.1428e+02, 4.4060e+01, + 1DIAGNOSTIC, 14, -9.301014837847e-01, 3.616190825235e-04, 9.5832e+02, 4.4036e+01, + 1DIAGNOSTIC, 15, -9.303756012890e-01, 2.859662743814e-04, 1.0025e+03, 4.4154e+01, + 1DIAGNOSTIC, 16, -9.306177587969e-01, 2.218448912789e-04, 1.0466e+03, 4.4171e+01, + 1DIAGNOSTIC, 17, -9.308551094193e-01, 1.705408529672e-04, 1.0906e+03, 4.3988e+01, + 1DIAGNOSTIC, 18, -9.309919750112e-01, 1.311289058971e-04, 1.1354e+03, 4.4810e+01, + 1DIAGNOSTIC, 19, -9.311262126729e-01, 1.016813380286e-04, 1.1797e+03, 4.4269e+01, + 1DIAGNOSTIC, 20, -9.311842154908e-01, 7.942063085706e-05, 1.2239e+03, 4.4224e+01, + Elapsed time (stage 2): 1224 + + +Total elapsed time: 1272 + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:29 EDT 2024: +COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:29 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-nativepro_desc-T1wbold.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) + 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:32 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-T1w.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-T1w.nii.gz + +[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  + +[ INFO ]..... Clean fMRI image has been processed (no FIX).  +cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc + +[ INFO ]..... Calculating tissue-specific and global signals changes  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:37 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:40 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:41 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5719 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:41 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:44 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5890 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:44 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +Default pixel value: 0 +Interpolation type: LinearInterpolateImageFunction +Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:47 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:47 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5991 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:47 EDT 2024: +COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain_mask.nii.gz -w  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +terminate called after throwing an instance of 'std::runtime_error' + what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5996 Aborted (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:48 EDT 2024: +COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc +(standard_in) 1: syntax error +Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc" + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:33 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine1.mat  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:35 EDT 2024: +COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine2.mat -inv  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:35 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:37 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:38 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:40 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:40 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:41 EDT 2024: +COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:42 EDT 2024: +COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii -trilinear + +ERROR: NAME OF FILE: sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsnative  +ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-*_surf-*.func.gii': No such file or directory + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-L mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-5k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-32k  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: +COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  + +While running: +/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii + +ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii +PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf + +File does not exist. + + +[ INFO ]..... Subject PNC010 hemi-R mapped to fsaverage5  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_mean  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:53 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_std  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:04 EDT 2024: +COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_tSNR.nii.gz  + +[ INFO ]..... Subject PNC010 volumetric tSNR calculated  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:05 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC010 hemi-L tSNR mapped to fsnative  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:05 EDT 2024: +COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  + +[ INFO ]..... Subject PNC010 hemi-R tSNR mapped to fsnative  + +[ INFO ]..... Getting subcortical timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:05 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6995 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:07 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_subcortical.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_subcortical.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz + +[ INFO ]..... Getting cerebellar timeseries  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:07 EDT 2024: +COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  +Using double precision for computations. +Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz + file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . +Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz +============================================================================= +The composite transform comprises the following transforms (in order): + 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) + 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) + 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) +============================================================================= +/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7038 Segmentation fault (core dumped) $l_command + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:09 EDT 2024: +COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_cerebellum.txt  + +7.3.2 +cwd +cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_cerebellum.txt +sysname Linux +hostname valentine.bic-wks.mni.mcgill.ca +machine x86_64 +user yiguz +whitesurfname white +UseRobust 0 +Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz +error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz +ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz +** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz' +** Program compile date = Dec 7 2020 + +[ INFO ]..... Running func post processing  + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:09 EDT 2024: +COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC010_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc 0 0 _space-func_desc-me FALSE 1  + +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- +surf directory found; lets get the party started! +-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- + +Traceback (most recent call last): + File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in + sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt + arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read + fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open + return ds.open(path, mode, encoding=encoding, newline=newline) + File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open + raise FileNotFoundError(f"{path} not found.") +FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. + + +------------------------------------------------------------- + proc_func processing ended in 72.200 minutes: + logs: + Steps completed : 15/19 + Status : INCOMPLETE + Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/logs/proc_func_19-03-2024-3145.txt +------------------------------------------------------------- + +yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:20:06 EDT 2024: +COMMAND -->  micapipe_procStatus_json PNC010 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/QC/sub-PNC010_ses-03_module-proc_func-desc-me_task-rest_bold.json  +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03 +micapipe tmp directory was not erased: + /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC010* + + +------------------------------------------------------------- + GLOBAL micapipe running time with LOCAL-MICA processing: 72.250 minutes  +------------------------------------------------------------- +---------------> DONE PROC-FUNC FOR RUN + sub-PNC010_ses-03 +:::::::::::::::::::::::done reprocessing, check if ready for tedana QC:::::::::::::::::::: diff --git a/submit_reprocess.sh b/submit_reprocess.sh new file mode 100755 index 00000000..db076ed7 --- /dev/null +++ b/submit_reprocess.sh @@ -0,0 +1,24 @@ +#!/bin/bash + +# this re-processes functional scans for the data release +# without bandpass + +MICAPIPE=/mica/mica1/03_projects/yigu/software/micapipe +qc_dir=/mica/mica1/03_projects/yigu/7t_funcQC/release +data_name="BIDS_PNI_release" + +IFS=$'\n' read -d '' -a subjlist < "${qc_dir}"/data/"${data_name}"_subjects.txt + +for subjid in ${subjlist[@]}; do + + for sesid in 01 02 03; do + + idBIDS=sub-${subjid}_ses-${sesid} + echo "========================reprocessing without filter===================" + echo $idBIDS + + sh ${MICAPIPE}/7tqc_functest.sh $subjid $sesid + + done +done +echo ":::::::::::::::::::::::done reprocessing, check if ready for tedana QC::::::::::::::::::::" \ No newline at end of file From cea175096e3c92abf563af2b5ed7ee61303ed9a2 Mon Sep 17 00:00:00 2001 From: Yigu Zhou <94867463+shyu2kko@users.noreply.github.com> Date: Thu, 21 Mar 2024 11:15:22 -0400 Subject: [PATCH 04/11] Delete 7tqc_functest.sh --- 7tqc_functest.sh | 37 ------------------------------------- 1 file changed, 37 deletions(-) delete mode 100755 7tqc_functest.sh diff --git a/7tqc_functest.sh b/7tqc_functest.sh deleted file mode 100755 index de0a1043..00000000 --- a/7tqc_functest.sh +++ /dev/null @@ -1,37 +0,0 @@ -#!/bin/bash - -# test micapipe functional processing -# with changed micapipe script as to save tedana outputs elsewhere -# MAKE SURE PROC SURF WAS RUN BEFORE -# MAKE SURE TO MAKE YOURSELF A MICAPIPE DEV - - -source ~/.bashrc -micapipe_dev # this function exists in ~/.bashrc - -testpath=/mica/mica1/03_projects/yigu/7t_funcQC/release # a micapipe directory will be created here which is great -tmpDir="${testpath}"/tmp_remask -bidsDir=/data/mica3/BIDS_PNI/data_release/rawdata -#bidsDir="${testpath}"/data/rawdata - - -#------set the subject and session MANUALLY-----# -subjid="PNC002" -sesid="02" - -#-------------call proc func----------# -MICAPIPE=/mica/mica1/03_projects/yigu/software/micapipe - -cd $MICAPIPE - -./micapipe -sub $subjid \ - -ses $sesid \ - -out $testpath \ - -bids $bidsDir \ - -tmpDir $tmpDir \ - -proc_func \ - -mainScanStr "task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold" \ - -nocleanup \ - -mica # this is required as environment. - -echo "---------------> DONE PROC-FUNC FOR RUN" -echo " sub-${subjid}_ses-${sesid}" From e7a9be519eb56d9632365e8c29842f75968ffe5c Mon Sep 17 00:00:00 2001 From: Yigu Zhou <94867463+shyu2kko@users.noreply.github.com> Date: Thu, 21 Mar 2024 11:15:54 -0400 Subject: [PATCH 05/11] Delete 7tqc_tedana.sh --- 7tqc_tedana.sh | 38 -------------------------------------- 1 file changed, 38 deletions(-) delete mode 100755 7tqc_tedana.sh diff --git a/7tqc_tedana.sh b/7tqc_tedana.sh deleted file mode 100755 index babc4ecd..00000000 --- a/7tqc_tedana.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/bash - -# this script resubmits proc_func temp files through tedana -# for testing - -source /home/bic/yiguz/.bashrc -micapipe_dev -source $MICAPIPE/functions/init.sh - -#-------figure out echo time------# -mainScanStr="task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold" -subject_bids="/mica/mica1/03_projects/yigu/7t_funcQC/data/rawdata/sub-PNC003/ses-01" -idBIDS="sub-PNC003_ses-01" -tmp="/mica/mica1/03_projects/yigu/7t_funcQC/tmp/3431_micapipe_proc-func_sub-PNC003_ses-01" - -IFS=',' read -ra func_json <<< $mainScanStr -for i in "${!func_json[@]}"; do - func_json[i]=$(ls "${subject_bids}/func/${idBIDS}_${func_json[$i]}".json 2>/dev/null) -done # Full path -mainScanJson=(${func_json[*]}) - - -unset EchoTime -for json in ${mainScanJson[*]}; do - EchoTime+=($(grep EchoTime "${json}" | awk -F ' ' '{print $2}' | awk -F ',' '{print $1}')) -done - -# retrieve scans for tedana -tedana_dir="${tmp}"/tedana -tmp_func_mask="${tmp}/mainScan01_mean_mask.nii.gz" -scans4tedana=("${tmp}"/mainScan_mc.nii.gz $(ls "${tmp}"/mainScan?_mc.nii.gz)) -echo "Files : ${scans4tedana[*]/${tmp}/}" -echo "EchoNumber : ${EchoNumber[*]}" -#echo "EchoTime :" "${EchoTime[*]}" - -mkdir -p "${tedana_dir}" - -tedana -d $(printf "%s " "${scans4tedana[@]}") -e $(printf "%s " "${EchoTime[@]}") --out-dir "${tedana_dir}" --mask "${tmp_func_mask}" From 79cee8587146d463b1db9fac14194186f5b01a20 Mon Sep 17 00:00:00 2001 From: Yigu Zhou <94867463+shyu2kko@users.noreply.github.com> Date: Thu, 21 Mar 2024 11:16:19 -0400 Subject: [PATCH 06/11] Delete micapipe --- micapipe | 1118 ------------------------------------------------------ 1 file changed, 1118 deletions(-) delete mode 100755 micapipe diff --git a/micapipe b/micapipe deleted file mode 100755 index dd2ae160..00000000 --- a/micapipe +++ /dev/null @@ -1,1118 +0,0 @@ -#!/bin/bash -# -# MICA BIDS structural processing -# -version() { - echo -e "\nMICAPIPE January 2024 (Version v0.2.3 'Northern flicker')\n" -} -#---------------- FUNCTION: HELP ----------------# -help() { -echo -e " -\033[38;5;141mCOMMAND:\033[0m - $(basename $0) - - -\033[38;5;141mARGUMENTS:\033[0m -\t\033[38;5;197m-sub\033[0m : Subject identification -\t\033[38;5;197m-out\033[0m : Output directory for the processed files . -\t\033[38;5;197m-bids\033[0m : Path to BIDS directory -\t\033[38;5;120m-ses\033[0m : OPTIONAL flag that indicates the session name (if omitted will manage as SINGLE session) - - Flags for basic stages of processing: -\t\033[38;5;197m-proc_structural\033[0m : Volumetric processing -\t\033[38;5;197m-proc_surf\033[0m : Cortical surface reconstruction processing -\t\t\t ( Requires: -proc_structural ) - - Flags for second stages of structural processing: -\t\033[38;5;197m-post_structural\033[0m : Post structural volumetric processing -\t\t\t ( Requires: -proc_structural and -proc_surf ) -\t\033[38;5;197m-proc_dwi\033[0m : DWI-Diffusion weighted images processing with MRtrix3 -\t\t\t ( Requires: -proc_structural ) -\t\033[38;5;197m-proc_asl\033[0m : ASL-Arterial spin labelling processing -\t\t\t ( Requires: -proc_structural ) -\t\033[38;5;197m-proc_flair\033[0m : T2/FLAIR processing -\t\t\t ( Requires: -proc_structural ) - - Flags for third stage, the connectome generation: -\t\033[38;5;197m-proc_func\033[0m : Funtional MRI processing and functional connectome generation -\t\t\t ( Requires: -proc_structural, -proc_surf and -post_structural ) -\t\033[38;5;197m-SC\033[0m : Structural connectome generation -\t\t\t ( Requires: -proc_dwi, -post_structural) -\t\033[38;5;197m-MPC\033[0m : Microstructural profiles and covariance analysis -\t\t\t ( Requires: -proc_surf and -post_structural ) -\t\033[38;5;197m-GD\033[0m : Geodesic distance analysis -\t\t\t ( Requires: -proc_surf and -post_structural ) -\t\033[38;5;197m-SWM\033[0m : Superficial White Matter generation and mapping -\t\t\t ( Requires: -post_structural ) -\t\033[38;5;197m-MPC_SWM\033[0m : MPC Superficial White Matter analysis -\t\t\t ( Requires: -post_structural ) - - Other functions: -\t\033[38;5;197m-cleanup\033[0m : Use this flag with a module flag to erase its outputs -\t\t\t ( Modules with multiple acquisitions require -acqStr (e.g. -proc_func, -MPC) -\t\033[38;5;197m-QC\033[0m : Creates a group level quality control report -\t\033[38;5;197m-QC_subj\033[0m : Creates a Subject quality control report - -\033[38;5;141mOPTIONAL ARGUMENTS FOR SUBMODULES:\033[0m -\t\033[38;5;197m-proc_structural\033[0m -\t \033[38;5;120m-T1wStr\033[0m : String to manually identify the main scan(s) for structural processing. separated by a comma, no blank spaces. -\t\t\t Default string is 'T1w.nii'. Multiple inputs example = '-T1wStr run-01_T1w,run-02_T1w' -\t \033[38;5;120m-uni\033[0m : Special workflow to use the UNI-T1map image as the structural reference (eg. 7T UNI-T1map). -\t\t\t Default = no processing of UNI-T1maps -\t \033[38;5;120m-mf\033[0m : Multiplying factor for the mp2rage denoising. Greater value removes more noise (eg. UNI-T1map use with -uni). -\t\t\t Default = 3 (7T), recomended value of 45 for 3T MP2RAGE - -\t\033[38;5;197m-proc_surf\033[0m -\t \033[38;5;120m-surf_dir\033[0m : If freesurfer/FastSurfer has been performed, it will create a symbolic link for compatibility -\t\t\t Prove full path to the subject's directory: e.g. /freesurfer/sub-001_ses-01 -\t \033[38;5;120m-freesurfer\033[0m : Use this option to reconstruct the cortical surface with Freesurfer 7. -\t\t\t Default surface reconstruction uses 'FastSurfer' -\t \033[38;5;120m-fs_licence\033[0m : Provide the full path to the freesurface licence. -\t\t\t e.g. /home/documents/licence.txt'. If you don't have a licence you can get one here: https://surfer.nmr.mgh.harvard.edu/registration.html -\t \033[38;5;120m-T1\033[0m : Overwrite the t1 input, MUST be 'nii.gz'. Use the full path to a T1w image to be processed. -\t\t\t By default micapipe uses t1nativepro to generate the surfaces. - - -\t\033[38;5;197m-post_structural\033[0m -\t \033[38;5;120m-atlas\033[0m : Registers only the selected the parcellations separated by a comma, no blank spaces (eg. economo,aparc). -\t\t\t Default is the 18 parcellations provided in the pipeline -\t \033[38;5;120m-freesurfer\033[0m : Use this option to reconstruct the cortical surface with Freesurfer 7. -\t\t\t Default surface reconstruction uses 'FastSurfer' - -\t\033[38;5;197m-proc_dwi\033[0m -\t \033[38;5;120m-dwi_main\033[0m : Full path to DWI with N number of directions and b0. If used, it will overwrite the defaults. -\t\t\t Default = //dwi/*_dir-AP_dwi.nii* -\t \033[38;5;120m-dwi_rpe\033[0m : DWI b0 image(s) with phase reversal encoding. If used, it will overwrite the defaults. -\t\t\t Default = //dwi/_dir-PA_dwi.nii* -\t\t\t Set to 'FALSE' if no DWI with reverse fase encoding will be provided -\t \033[38;5;120m-dwi_processed\033[0m : DWI processed, if file is provided the pre-processing of the DWIs will be skipped. -\t\t\t MUST be a mif (MRtrix image format) with bvecs, bvals, PhaseEncodingDirection and ReadoutTime encoded -\t \033[38;5;120m-rpe_all\033[0m : If all DWI directions & b-values are acquired twice this option can be used. -\t\t\t This option requires that both encoding contains the same number of volumes -\t \033[38;5;120m-regAffine\033[0m : Specify this option to perform an Affine registration ONLY from dwi to T1w. -\t\t\t Default is non linear registration SyN -\t \033[38;5;120m-dwi_acq\033[0m : Provide a string with this this flag to process new DWI acquisition. -\t\t\t This will create a new directory here: dwi/acq- -\t \033[38;5;120m-b0thr\033[0m : Specifies the b-value threshold for determining those image volumes that correspond to b=0. -\t\t\t Default = 61 . This value will vary from DWI acquisition and from scanner to scanner (3T or 7T) -\t \033[38;5;120m-no_bvalue_scaling\033[0m : Disable scaling of diffusion b-values by the square of the corresponding DW gradient norm. -\t\t\t Default is scaling. See more on MRtrix3 documentation -\t \033[38;5;120m-regSynth\033[0m : Specify this option to perform the registration based on synthseg. -\t \033[38;5;120m-dwi_upsample\033[0m : Use this flag to upsample the DWI to 1.25x1.25x1.25 to increase anatomical contrast (e.g. Low resolution DWI datasets). - -\t\033[38;5;197m-proc_func\033[0m -\t \033[38;5;120m-mainScanStr\033[0m : String to manually identify the main scan for func processing (eg. func/sub-001_.nii.gz) -\t\t\t Default='task-rest_acq-AP_bold' -\t\t\t Multiple strings separate by comma and no blank space for multiecho acquisitions ( e.g. 'echo1,echo2,echo3' ) -\t \033[38;5;120m-func_pe\033[0m : Full path to the main phase encoding scan for func processing -\t\t\t Default='task-rest_acq-APse_bold' -\t \033[38;5;120m-func_rpe\033[0m : Full path to the reverse phase encoding scan for func processing (If the path is wrong TOPUP won't run!) -\t\t\t Default='task-rest_acq-PAse_bold' -\t \033[38;5;120m-mainScanRun\033[0m : If multiple resting-state scans exist in the BIDS rawdata, -\t\t\t you must specify which scan to process ( e.g. '1' ) -\t \033[38;5;120m-phaseReversalRun\033[0m : If multiple phase encoding files exist in the BIDS rawdata (main phase), -\t\t\t you must specify which one to process ( e.g. '1' ) -\t \033[38;5;120m-topupConfig\033[0m : Path to specified config file for topup -\t\t\t ( distortion correction; eg. file.cnf ) -\t \033[38;5;120m-NSR\033[0m : Specify this option to perform white matter and CSF signal regression of timeseries -\t\t\t ( default = no white matter and CSF signal regression ) -\t \033[38;5;120m-GSR\033[0m : Specify this option to perform global, white matter and CSF signal regression of timeseries -\t\t\t ( default = no global, white matter and CSF signal regression ) -\t \033[38;5;120m-noFIX\033[0m : Specify this option to skip ICA-FIX processing. -\t\t\t ( default = FIX is run with specified training file ) -\t \033[38;5;120m-icafixTraining\033[0m : Path to specified ICA-FIX training file for nuisance signal regression ( file.RData ) -\t\t\t ( default = \$MICAPIPE/functions/MICAMTL_training_15HC_15PX.RData ) -\t \033[38;5;120m-sesAnat\033[0m : If longitudinal data is provided this flag allows to register the func session to the selected anatomical session -\t\t\t ( default processing is independent ) -\t \033[38;5;120m-dropTR\033[0m : Specify this option to drop the first five TRs. -\t\t\t ( default is FALSE ) -\t \033[38;5;120m-noFC\033[0m : Specify this option to skip the Functional Connectome generation (e.g. func-task). -\t\t\t ( default is FALSE ) - -\t\033[38;5;197m-SC\033[0m -\t \033[38;5;120m-tracts \033[0m : Number of streamlines, where 'M' stands for millions (default=40M) -\t \033[38;5;120m-keep_tck\033[0m : If provided, the tractogram will be copied to '/micapipe//dwi' -\t \033[38;5;120m-autoTract\033[0m : Automatic tractogram segmentation (This is an optional procedure) -\t \033[38;5;120m-filter\033[0m : Algorithm for tractogram filtering ( default = 'SIFT2' ['COMMIT2', 'both']) -\t \033[38;5;120m-dwi_acq\033[0m : Provide the acquisition name from DWI which will be use to generate the SC, if it is different from default. -\t \033[38;5;120m-weighted_SC\033[0m : Weight the SC by a quantitative map in DWI space (e.g. FA, ADC, qT1 or MT). None by default. -\t \033[38;5;120m-tck\033[0m : Provide a pre-calculated whole brain tractography (tck) in DWI space to generate the connectomes. - - -\t\033[38;5;197m-MPC\033[0m and \033[38;5;197m-MPC_SWM\033[0m -\t \033[38;5;120m-microstructural_img\033[0m : Path to scan on which MPC will be performed ( ./img.nii.gz ) -\t\t\t If left blank or omitted, defaults to using qT1 identified through BIDS directory structure -\t \033[38;5;120m-microstructural_reg\033[0m : Path to scan which will be register to the surface ( ./img_2reg.nii.gz ) -\t\t\t It MUST be on the same space as the main microstructural image!! -\t\t\t If it is EMPTY will try to find a T1map from here: anat/*mp2rage*T1map.nii* -\t\t\t Set to 'FALSE' to use microstructural_img for registrations -\t \033[38;5;120m-mpc_acq\033[0m : Provide a string with this this flag to process new quantitative map. -\t\t\t ( this will create a new directory here: anat/surf/micro_profiles/acq- ) -\t \033[38;5;120m-regSynth\033[0m : Specify this option to perform the registration based on synthseg. -\t \033[38;5;120m-reg_nonlinear\033[0m : Specify this option to perform the NON-Linear registration (e.g. MRI with strong geometric distortions). - -\t\033[38;5;197m-proc_asl\033[0m -\t \033[38;5;120m-aslScanStr\033[0m : String to manually identify the ASL scan for processing (eg. perf/sub-001_.nii[.gz]) -\t\t\t Default='asl' -\t \033[38;5;120m-m0ScanStr\033[0m : String to manually identify the M0 calibration scan for processing (eg. perf/sub-001_.nii[.gz]) -\t\t\t Default='m0scan' - -\t\033[38;5;197m-proc_flair\033[0m -\t \033[38;5;120m-flairScanStr\033[0m : String to manually identify the T2/FLAIR scan for processing (eg. anat/sub-001_.nii[.gz]) -\t\t\t Default='FLAIR' - -\t\033[38;5;197m-cleanup\033[0m -\t \033[38;5;120m-acqStr\033[0m : String to manually identify the acquisition to be erase - - -\033[38;5;141mOPTIONS:\033[0m -\t\033[38;5;197m-h|-help\033[0m : Print help -\t\033[38;5;197m-v|-version\033[0m : Print software version -\t\033[38;5;197m-force\033[0m : WARNING this will overwrite the subject directory -\t\033[38;5;197m-quiet\033[0m : Do not print comments -\t\033[38;5;197m-nocleanup\033[0m : Do not delete temporal directory at script completion -\t\033[38;5;197m-threads\033[0m : Number of threads (Default is 6) -\t\033[38;5;197m-tmpDir\033[0m : Specify location of temporary directory (Default is /tmp) -\t\033[38;5;197m-mica\033[0m : Only for MICA local processing -\t\033[38;5;197m-qsub\033[0m : Only for MICA network processing (SGE mica.q) -\t\033[38;5;197m-qall\033[0m : Only for MICA network processing (SGE all.q) - - -\033[38;5;141mUSAGE:\033[0m - \033[38;5;141m$(basename $0)\033[0m \033[38;5;197m-sub\033[0m \033[38;5;197m-out\033[0m \033[38;5;197m-bids\033[0m \033[38;5;197m-proc_structural\033[0m \033[38;5;197m-proc_surf\033[0m - \033[38;5;141m$(basename $0)\033[0m \033[38;5;197m-sub\033[0m \033[38;5;197m-out\033[0m \033[38;5;197m-bids\033[0m \033[38;5;197m-proc_dwi\033[0m - -\033[38;5;141mDOCUMENTATION:\033[0m - https://micapipe.readthedocs.io - -\033[38;5;141mREPOSITORY:\033[0m - https://github.com/MICA-MNI/micapipe - -\033[38;5;141mDEPENDENCIES:\033[0m - > AFNI 23.1.09 (https://afni.nimh.nih.gov/download) - > ANTs 2.3.3 (https://github.com/ANTsX/ANTs) - > FSL 6.0.2 (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki) - > Freesurfer 7.3.2 (https://surfer.nmr.mgh.harvard.edu/) - > MRtrix3 3.0.1 (https://www.mrtrix.org) - > workbench 1.4.2s - > python 3.9.15 - > R 3.6.3 - > FIX 1.06 (FMRIB's ICA-based Xnoiseifier) - - -McGill University, MNI, MICA-lab -https://github.com/MICA-MNI/micapipe -http://mica-mni.github.io/ -" -} - -# Source utilities functions from MICAPIPE -MICAPIPE=$(dirname $(realpath "$0")) -source "${MICAPIPE}/functions/utilities.sh" - -# -----------------------------------------------------------------------------------------------# -# ARGUMENTS -# Create VARIABLES -argCP="$@" -for arg in "$@" -do - case "$arg" in - -h|-help) - help - exit 1 - ;; - -v|-version) - version - exit 1 - ;; - -sub) - id=$2 - shift;shift - ;; - -out) - out=$2 - shift;shift - ;; - -bids) - BIDS=$2 - shift;shift - ;; - -ses) - SES=$2 - shift;shift - ;; - -proc_structural) - procVOL=TRUE - shift - ;; - -proc_surf) - procSurf=TRUE - shift - ;; - -proc_dwi) - procDWI=TRUE - shift - ;; - -dwi_processed) - dwi_processed="$2" - shift;shift; - ;; - -dwi_acq) - dwi_acq=TRUE - dwi_str=$2 - shift;shift - ;; - -b0thr) - b0thr=${2} - shift;shift; - ;; - -no_bvalue_scaling) - bvalscale=no - shift - ;; - -proc_func) - procFunc=TRUE - shift - ;; - -topupConfig) - configFileInput=TRUE - configFile=$2 - shift;shift - ;; - -icafixTraining) - icaFileInput=TRUE - trainingFile=$2 - shift;shift - ;; - -mainScanRun) - specMainScan=TRUE - thisMainScan=$2 - shift;shift - ;; - -mainScanStr) - mainScanStr=$2 - shift;shift - ;; - -func_pe) - func_pe=$2 - shift;shift - ;; - -func_rpe) - func_rpe=$2 - shift;shift - ;; - -sesAnat) - sesAnat=$2 - shift;shift - ;; - -phaseReversalRun) - specPhase=TRUE - thisPhase=$2 - shift;shift - ;; - -NSR) - NSR=TRUE - shift - ;; - -GSR) - GSReg=TRUE - shift - ;; - -regAffine) - regAffine=TRUE - shift - ;; - -noFIX) - skipFIX=TRUE - shift - ;; - -dropTR) - dropTR=TRUE - shift - ;; - -noFC) - noFC=TRUE - shift - ;; - -proc_flair) - procFLAIR=TRUE - shift - ;; - -flairScanStr) - flairScanStr="$2" - shift;shift; - ;; - -post_structural) - postVOL=TRUE - shift - ;; - -SC) - postDWI=TRUE - shift - ;; - -GD) - postGD=TRUE - shift - ;; - -MPC) - postMPC=TRUE - shift - ;; - -MPC_SWM) - MPC_SWM=TRUE - shift - ;; - -reg_nonlinear) - reg_nonlinear=TRUE - shift - ;; - -microstructural_img) - input_im=$2 - shift;shift - ;; - -microstructural_reg) - mpc_reg=$2 - shift;shift - ;; - -mpc_acq) - mpc_acq=TRUE - mpc_str=$2 - shift;shift - ;; - -regSynth) - synth_reg=TRUE - shift - ;; - -QC) - QCgroup=TRUE - shift - ;; - -QC_subj) - qcsubj=TRUE - shift - ;; - -mica) - mica=TRUE - shift - ;; - -tracts) - tracts=$2 - shift;shift - ;; - -keep_tck) - keep_tck=TRUE - shift - ;; - -autoTract) - autoTract=TRUE - shift - ;; - -weighted_SC) - weighted_SC=$2 - shift;shift - ;; - -tck) - tck_file=$2 - shift;shift - ;; - -tmpDir) - tmpDir=$2 - shift;shift; - ;; - -T1wStr) - T1wStr="$2" - shift;shift; - ;; - -atlas) - atlas="$2" - shift;shift; - ;; - -surf_dir) - surfdir=$2 - shift;shift; - ;; - -freesurfer) - FreeSurfer=TRUE - shift - ;; - -fs_licence) - fs_licence=$2 - shift;shift; - ;; - -T1) - t1="$2" - shift;shift; - ;; - -uni) - UNI=TRUE - shift - ;; - -mf) - MF="$2" - shift;shift; - ;; - -dwi_main) - dwi_main="$2" - shift;shift; - ;; - -dwi_rpe) - dwi_rpe="$2" - shift;shift; - ;; - -dwi_upsample) - dwi_upsample=TRUE - shift - ;; - -SWM) - SWM=TRUE - shift - ;; - -rpe_all) - rpe_all=TRUE - shift - ;; - -qsub) - micaq=TRUE - shift - ;; - -qall) - qall=TRUE - shift - ;; - -nocleanup) - nocleanup=TRUE - shift - ;; - -cleanup) - cleanup=TRUE - shift - ;; - -acqStr) - acqStr=$2 - shift;shift - ;; - -threads) - threads=$2 - shift;shift - ;; - -force) - force=TRUE - shift - ;; - -quiet) - quiet=TRUE - shift - ;; - -proc_asl) - procASL=TRUE - shift - ;; - -aslScanStr) - aslScanStr=$2 - shift;shift - ;; - -m0ScanStr) - m0ScanStr=$2 - shift;shift - ;; - -*) - Error "Unknown option ${1}" - exit 1 - ;; - esac -done - - -# Argument check out & WARNINGS -if [ "$QCgroup" = "TRUE" ]; then - if [ -z ${out} ]; then - Error "For Quality Control -out is mandatory!!! - -out : $out" - exit 1; - else - out=$(realpath $out) - Do_cmd python ${MICAPIPE}/functions/QC_group.py -out ${out} - exit 0 - fi -fi - - -# argument check out & WARNINGS -missing_arg - -runs=($procVOL $procSurf $postVOL $procDWI $procASL $procFLAIR $procFunc $procTask $postDWI $postGD $postMorph $postMPC $qtest $qcsubj $cleanup $SWM $MPC_SWM) -if [ "${#runs[@]}" -lt 1 ]; then -Error "A processing flag is missing: - -proc_structural - -proc_surfs - -post_structural - -proc_dwi - -proc_asl - -proc_flair - -proc_func - -SC - -MPC - -GD - -SWM - -MPC_SWM - -QC_subj - -cleanup" -exit 1; fi - - -# -----------------------------------------------------------------------------------------------# -# Call micapipe_cleanup within micapipe -echo -e "\n\nmicapipe ${argCP}" -if [[ $cleanup == "TRUE" ]]; then "${MICAPIPE}"/functions/micapipe_cleanup ${argCP/-cleanup/}; exit; fi - -# Optional arguments func -optarg_func=($configFile $trainingFile $thisMainScan $thisPhase) -if [[ $configFileInput == "TRUE" ]]; then optarg_func[0]=$configFile; else optarg_func[0]=DEFAULT; fi -if [[ $icaFileInput == "TRUE" ]]; then optarg_func[1]=$trainingFile; else optarg_func[1]=DEFAULT; fi -if [[ $specMainScan == "TRUE" ]]; then optarg_func[2]=$thisMainScan; else optarg_func[2]=DEFAULT; fi -if [[ $specPhase == "TRUE" ]]; then optarg_func[3]=$thisPhase; else optarg_func[3]=DEFAULT; fi -if [[ $NSR == "TRUE" ]]; then performNSR=1; else performNSR=0; fi -if [[ $GSReg == "TRUE" ]]; then performGSR=1; else performGSR=0; fi -if [[ $skipFIX == "TRUE" ]]; then noFIX=1; else noFIX=0; fi -if [[ $dropTR == "TRUE" ]]; then dropTR=TRUE; else dropTR=FALSE; fi -if [ -z "$mainScanStr" ]; then mainScanStr=DEFAULT; fi -if [ -z "$func_pe" ]; then func_pe=DEFAULT; else func_pe=$(realpath $func_pe); fi -if [ -z "$func_rpe" ]; then func_rpe=DEFAULT; else func_rpe=$(realpath $func_rpe); fi -if [ -z "$sesAnat" ]; then sesAnat=FALSE; fi -if [ -z "${regAffine}" ]; then regAffine=FALSE; else regAffine=TRUE; fi -if [ -z "${noFC}" ]; then noFC=FALSE; else noFC=TRUE; fi - -# Optional arguments mpc -if [[ ${mpc_acq} == "TRUE" ]]; then mpc_str=${mpc_str}; else mpc_str=DEFAULT; fi -if [ -z ${input_im} ]; then input_im=DEFAULT; else input_im=$(realpath $input_im); fi -if [ -z ${mpc_reg} ]; then - mpc_reg=DEFAULT -elif [ ${mpc_reg} == "FALSE" ]; then - mpc_reg=$(realpath $input_im) -else - mpc_reg=$(realpath $mpc_reg) -fi -if [[ ${synth_reg} == "TRUE" ]]; then synth_reg=${synth_reg}; else synth_reg="FALSE"; fi -if [[ ${reg_nonlinear} == "TRUE" ]]; then reg_nonlinear=${reg_nonlinear}; else reg_nonlinear="FALSE"; fi - -# Optional arguments SC -if [ -z ${tracts} ]; then tracts=40M; else tracts=$tracts; fi -if [ -z ${autoTract} ]; then autoTract=FALSE; else autoTract=TRUE; fi -if [ -z ${keep_tck} ]; then keep_tck=FALSE; else keep_tck=TRUE; fi -if [ -z ${weighted_SC} ]; then weighted_SC=FALSE; else weighted_SC=$(realpath ${weighted_SC}); fi -if [ -z ${tck_file} ]; then tck_file=FALSE; else tck_file=$(realpath ${tck_file}); fi - -# Optional arguments proc_dwi -# User provided DWI main phase -if [ -z ${dwi_main} ]; then - dwi_main=DEFAULT -else - IFS=',' read -ra dwis_main <<< $dwi_main - for i in "${!dwis_main[@]}"; do dwis_main[i]=$(realpath ${dwis_main[$i]}); done # Full path - dwi_main=$(IFS=','; echo "${dwis_main[*]}") -fi - -# User provided DWI reverse phase encoded -if [ -z ${dwi_rpe} ]; then - dwi_rpe=DEFAULT -elif [ ${dwi_rpe} == "FALSE" ]; then - dwi_rpe=${dwi_rpe} -else - IFS=',' read -ra dwis_rpe <<< $dwi_rpe - for i in "${!dwis_rpe[@]}"; do dwis_rpe[i]=$(realpath ${dwis_rpe[$i]}); done # Full path - dwi_rpe=$(IFS=','; echo "${dwis_rpe[*]}") -fi -if [ -z ${rpe_all} ]; then rpe_all="FALSE"; else rpe_all="TRUE"; fi -if [[ $dwi_acq == "TRUE" ]]; then dwi_str=${dwi_str}; else dwi_str=DEFAULT; fi -if [ -z ${b0thr} ]; then b0thr=61; else b0thr=${b0thr}; fi -if [ -z ${bvalscale} ]; then bvalscale=DEFAULT; else bvalscale=no; fi -if [[ $dwi_upsample == "TRUE" ]]; then dwi_upsample=${dwi_upsample}; else dwi_upsample="FALSE"; fi - -# Optional arguments proc_asl -if [ -z "${aslScanStr}" ]; then aslScanStr=DEFAULT; fi -if [ -z "${m0ScanStr}" ]; then m0ScanStr=DEFAULT; fi - -# Optional arguments proc_flair (DEFAULT is *FLAIR.nii*) -if [ -z "${flairScanStr}" ]; then flairScanStr=DEFAULT; fi - -# Get the real path of the Inputs -inputs_realpath - -# Number of session (Default is "ses-pre") -if [ -z ${SES} ]; then SES="SINGLE"; else SES="ses-${SES/ses-/}"; fi - -# Assigns variables names -bids_variables "$BIDS" "$id" "$out" "$SES" - -# Check BIDS Directory -if [ ! -d "${subject_bids}" ]; then Error "$id was not found on the BIDS directory\n\t Check ls ${subject_bids}"; exit 1; fi - -# Erase temporal files by default -if [ -z ${nocleanup} ]; then nocleanup=FALSE; fi - -# No print Do_cmd -if [ "$quiet" = "TRUE" ]; then export quiet=TRUE; fi - -# Temporal directory -if [ -z ${tmpDir} ]; then export tmpDir=/tmp; else tmpDir=$(realpath $tmpDir); fi - -# Surface directory (if already exists) -if [ -z ${surfdir} ]; then surfdir="FALSE"; else surfdir=$(realpath $surfdir); fi -if [ -z ${FreeSurfer} ]; then FreeSurfer="FALSE"; else FreeSurfer="TRUE"; fi -if [ -z ${t1} ]; then t1=DEFAULT; else t1=$(realpath $t1); fi - -# Altas selection (DEFAULT is the 18 of micapipe) -if [ -z ${atlas} ]; then atlas=DEFAULT; else atlas="$atlas"; fi - -# T1w image to process (DEFAULT is *T1w.nii*) -if [ -z ${T1wStr} ]; then T1wStr=DEFAULT; else T1wStr="$T1wStr"; fi -if [ -z ${UNI} ]; then UNI="FALSE"; else UNI="TRUE"; fi -if [ -z ${MF} ]; then MF=3; else MF="${MF}"; fi - -# Processed DWI -if [ -z ${dwi_processed} ]; then dwi_processed="FALSE"; else dwi_processed=$(realpath $dwi_processed); fi - -# -----------------------------------------------------------------------------------------------# -Title "MICA pipeline - (Version $Version) \n\t\tSubject: $id Session: $SES" - -# -----------------------------------------------------------------------------------------------# -# Launch the init file for local processing at MICA lab -if [ "$micaq" = "TRUE" ] || [ "$qall" = "TRUE" ] || [ "$mica" = "TRUE" ]; then - source "${MICAPIPE}/functions/init.sh" "$threads" -else - - # -----------------------------------------------------------------------------------------------# - # CHECK PACKAGES DEPENDENCIES - # Dicom to nifti X converter - if [[ -z $(which dcm2niix) ]]; then Error "Check your dcm2niix installation"; exit 1; fi - # tree display - if [[ -z $(which tree) ]]; then Warn "tree function was not found"; fi - # MRtrix3 - if [[ -z $(which mrinfo) ]]; then Error "MRtrix3 was not found"; exit 1; fi - # freesurfer - if [[ -z $(which recon-all) ]]; then Error "FreeSurfer was not found"; exit 1; fi - # FSL - if [[ -z $(which flirt) ]]; then Error "FSL was not found"; exit 1; fi - # AFNI - if [[ -z $(which 3dresample) ]]; then Error "AFNI was not found"; exit 1; fi - # ANTSx - if [[ -z $(which antsRegistration) ]]; then Error "ANTs was not found"; exit 1; fi - # workbench - if [[ -z $(which wb_command) ]]; then Error "WorkBench was not found"; exit 1; fi - # fix - if [[ -z $(which fix) ]]; then Warning "fix was not found, ICA-FIX will be skipped"; fi - # R - if [[ -z $(which R) ]]; then Warning "R was not found"; fi - # c3d - if [[ -z $(which c3d_affine_tool) ]]; then Warning "c3d was not found"; fi -fi - -# Freesurfer fs_licence -if [ -z ${fs_licence} ]; then Error "Freesurfer licence was not found: Use -fs_licence"; exit 1; else fs_licence=$(realpath $fs_licence); fi -if [ ! -f ${fs_licence} ]; then Error "Freesurfer licence file was not found: \n\t\t Check ls ${fs_licence}"; exit 1; fi -Note "Freesurfer licence:" ${fs_licence} -export FS_LICENSE=${fs_licence} -# Processing -if [[ -z $PROC ]]; then export PROC="LOCAL"; fi - -# Number of THREADS used by ANTs and workbench, default is 6 if not defined by -threads -if [[ -z $threads ]]; then export threads=6; fi - -# Directories check -if [[ ${force} == TRUE ]]; then - Warning "$id processing directory will be overwritten" - rm -rf $out/${subject}; -fi - -# -----------------------------------------------------------------------------------------------# -# Timer & Beginning -aloita=$(date +%s) - -# micapipe working Directory -if [ ! -d "${out}" ]; then Do_cmd mkdir -m 777 -p "$out"; fi - -# Create tmp dir -if [ ! -d ${tmpDir} ]; then Do_cmd mkdir -m 777 -p $tmpDir; fi - -# -----------------------------------------------------------------------------------------------# -# subject_dir -# Creates subject directory if it doesn't exist -if [ ! -d "${subject_dir}" ]; then - Info "Subject ${idBIDS} directory doesn't exist, creating..." - Do_cmd mkdir -m 770 -p "${subject_dir}"/{logs,xfm,dwi,func,anat,QC,parc,surf,maps} -fi - -# Pipeline description json -micapipe_json -if [ ! -f "${out}/dataset_description.json" ]; then micapipe_json; fi -if [ ! -f "${out}/micapipe_processed_sub.csv" ]; then echo "Subject, Session, Module, Status, Progress, User, Workstation, Date, Processing.time, Processing, Version" > "${out}/micapipe_processed_sub.csv"; fi - -# -----------------------------------------------------------------------------------------------# -# Structural processing: Volumetric -# -----------------------------------------------------------------------------------------------# -if [ "$procVOL" = "TRUE" ]; then - log_file_str=$dir_logs/proc_structural_$(date +'%Y-%m-%d_%H.%M.%S') - COMMAND="${scriptDir}/01_proc-structural.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $T1wStr $UNI $MF" - # mica.q - Structural processing: Volumetric - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - Structural processing: Volumetric" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_volumetric -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC - # all.q - Structural processing: Volumetric - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - Structural processing: Volumetric" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_volumetric -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC - else - # LOCAL Structural processing: Volumetric - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# # # Surface processing: Freesurfer | FastSurfer -if [ "$procSurf" = "TRUE" ]; then - log_file_str=$dir_logs/proc_surf_$(date +'%Y-%m-%d_%H.%M.%S') - COMMAND="${scriptDir}/01_proc-surf.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $surfdir $FreeSurfer $fs_licence $t1" - # mica.q - Surface processing - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - Surface processing" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_surf -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC - # all.q - Surface processing - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - Surface processing" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_surf -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC - else - # LOCAL - Surface processing - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# POST Structural processing mica-02 -# -----------------------------------------------------------------------------------------------# -# # # POST Structural processing -# REQUIRES -proc_structural and -proc_surf -if [ "$postVOL" = "TRUE" ]; then - log_file_str=$dir_logs/post_structural_$(date +'%Y-%m-%d_%H.%M.%S') - COMMAND="${scriptDir}/02_post-structural.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $atlas $FreeSurfer" - # mica.q - POST Structural processing - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - POST Structural processing" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_pstStruc -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - # all.q - POST Structural processing - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - POST Structural processing" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_pstStruc -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - else - # LOCAL - post_structural processing - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# # # Diffusion processing -# -----------------------------------------------------------------------------------------------# -# Diffusion processing -if [ "$procDWI" = "TRUE" ]; then - if [[ ${dwi_str} != "DEFAULT" ]]; then log_str=_${dwi_str}; else log_str=""; fi - log_file_str=$dir_logs/proc_dwi_$(date +'%Y-%m-%d_%H.%M.%S')${log_str} - COMMAND="${scriptDir}/02_proc-dwi.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $dwi_main $dwi_rpe $dwi_processed $rpe_all $regAffine $dwi_str $b0thr $bvalscale $synth_reg $dwi_upsample" - # mica.q - Diffusion processing - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - Diffusion processing" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_dwi -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - # all.q - Diffusion processing - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - Diffusion processing" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_dwi -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - else - # LOCAL - Diffusion processing - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# # # Arterial spin labelling processing -# -----------------------------------------------------------------------------------------------# -# Arterial spin labelling processing -if [ "$procASL" = "TRUE" ]; then - log_file_str=$dir_logs/proc_asl_$(date +'%Y-%m-%d_%H.%M.%S') - COMMAND="${scriptDir}/02_proc-asl.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $aslScanStr $m0ScanStr" - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - Arterial spin labelling processing" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_asl -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - # all.q - POST Structural processing - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - Arterial spin labelling processing" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_asl -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - else - # LOCAL - post_structural processing - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# # # T2/FLAIR processing -# -----------------------------------------------------------------------------------------------# -# T2/FLAIR processing -if [ "$procFLAIR" = "TRUE" ]; then - log_file_str=$dir_logs/proc_flair_$(date +'%Y-%m-%d_%H.%M.%S') - COMMAND="${scriptDir}/02_proc-flair.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $flairScanStr" - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - T2/FLAIR processing" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_flair -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - # all.q - flair processing - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - T2/FLAIR processing" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_flair -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - else - # LOCAL - flair processing - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# POST Microstructural profile covariance mica-03 -# -----------------------------------------------------------------------------------------------# -# Generates microstructural profiles and covariance matrices -# REQUIRES -proc_structural and -proc_surf -if [ "$postMPC" = "TRUE" ]; then - rand=${RANDOM} - log_file_str="$dir_logs/MPC_$(date +'%d-%m-%Y')-${rand}" - COMMAND="${scriptDir}/03_MPC.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir ${input_im} ${mpc_reg} ${mpc_str} ${synth_reg} ${reg_nonlinear}" - jobName="q${rand}_mpc" - # mica.q - Microstructural profile covariance - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - Microstructural profile covariance" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=6G -N "${jobName}" -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - qsub -q mica.q -hold_jid "${jobName}" -N "${jobName/q/r}" "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" - # all.q - Microstructural profile covariance - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - Microstructural profile covariance" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N "${jobName}" -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - qsub -q all.q -hold_jid "${jobName}" -N "${jobName/q/r}" "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" - else - # LOCAL - Microstructural-Structural processing - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# POST Geodesic distance mica-03 -# -----------------------------------------------------------------------------------------------# -# Generates geodesic distance matrices calculated along cortical surface mesh -# REQUIRES -post-structural and -proc_surf -if [ "$postGD" = "TRUE" ]; then - log_file_str=$dir_logs/GD_$(date +'%Y-%m-%d_%H.%M.%S') - COMMAND="${scriptDir}/03_GD.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir" - # mica.q - Geodesic distance - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - Geodesic distance" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_gd -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - # all.q - Geodesic distance - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - Geodesic distance" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_gd -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - else - # LOCAL - Geodesic distance processing - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# Superficial White Matter -# -----------------------------------------------------------------------------------------------# -# Generates superficial white matter surfaces 01,02 and 03 -# REQUIRES -post-structural -if [ "$SWM" = "TRUE" ]; then - log_file_str=$dir_logs/SWM_$(date +'%Y-%m-%d_%H.%M.%S') - COMMAND="${scriptDir}/03_SWM.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir" - # Command running - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt -fi - - -# -----------------------------------------------------------------------------------------------# -# Microstructural Profile Covariance - Superficial White Matter -# -----------------------------------------------------------------------------------------------# -# Generates superficial white matter surfaces based MPC -# REQUIRES -post-structural -if [ "$MPC_SWM" = "TRUE" ]; then - rand=${RANDOM} - log_file_str="$dir_logs/MPC-SWM_$(date +'%Y-%m-%d_%H.%M.%S')-${rand}" - COMMAND="${scriptDir}/03_MPC-SWM.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir ${input_im} ${mpc_reg} ${mpc_str} ${synth_reg} ${reg_nonlinear}" - # Command running - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" -fi - - -# -----------------------------------------------------------------------------------------------# -# SC: Structural Connectome processing (tractography) -# -----------------------------------------------------------------------------------------------# -# REQUIRES -proc_dwi -if [ "$postDWI" = "TRUE" ]; then - if [[ ${dwi_str} != "DEFAULT" ]]; then log_str=_${dwi_str}; else log_str=""; fi - log_file_str=$dir_logs/SC-${tracts}_$(date +'%Y-%m-%d_%H.%M.%S')${log_str} - COMMAND="${scriptDir}/03_SC.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $tracts $autoTract $keep_tck $dwi_str $weighted_SC $tck_file" - # mica.q - post-DWI processing (tractography) - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - POST DWI processing (tractography)" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - qsub -q mica.q -pe smp $threads -l h_vmem=1.5G -N q${id}_SC -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - # all.q - post-DWI processing (tractography) - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - POST DWI processing (tractography)" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - qsub -q all.q -pe all.pe $threads -l h_vmem=1.5G -N q${id}_SC -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - else - # LOCAL - post-DWI processing (tractography) - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# # # functional MRI -# -----------------------------------------------------------------------------------------------# -if [ "$procFunc" = "TRUE" ]; then - rand=${RANDOM} - log_file_str=$dir_logs/proc_func_$(date +'%d-%m-%Y')"-${rand}" - COMMAND="${scriptDir}/02_proc-func.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir ${optarg_func[0]} ${optarg_func[1]} ${optarg_func[2]} ${optarg_func[3]} ${mainScanStr} ${func_pe} ${func_rpe} ${performNSR} ${performGSR} ${noFIX} ${sesAnat} ${dropTR} ${noFC}" - jobName="q${rand}_fun" - # mica.q - Resting state fMRI processing - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - fMRI processing" - Warning "This option only works on the MICA workstations" - export PROC="qsub-MICA" - # Info "Setting a warper to run on mica.q" - Do_cmd qsub -q mica.q -pe smp $threads -l h_vmem=6G -N ${jobName} -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - qsub -q mica.q -hold_jid "${jobName}" -N "${jobName/q/r}" "${scriptDir}"/rename_log.sh "${log_file_str}" "tagMRI" "${rand}" - # all.q - Resting state fMRI processing - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - fMRI processing" - Warning "This option only works on the McGill BIC network" - export PROC="qsub-all.q" - # Info "Setting a warper to run on all.q" - Do_cmd qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N ${jobName} -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - qsub -q all.q -hold_jid "${jobName}" -N "${jobName/q/r}" "${scriptDir}"/rename_log.sh "${log_file_str}" "tagMRI" "${rand}" - else - # LOCAL - Resting state fMRI processing - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - "${scriptDir}"/rename_log.sh "${log_file_str}" "tagMRI" "${rand}" - fi -fi - - -# -----------------------------------------------------------------------------------------------# -# # # Individual QC -# -----------------------------------------------------------------------------------------------# -if [ "$qcsubj" = "TRUE" ]; then - rand=${RANDOM} - log_file_str=$dir_logs/qc_subj_$(date +'%d-%m-%Y')"-${rand}" - COMMAND="${scriptDir}/QC.sh -sub $id -ses "${SES}" -out ${out/\/micapipe_v0.2.0/} -bids $BIDS -tmpDir $tmpDir -threads $threads -PROC" - jobName="q${rand}_qc" - # mica.q - Subject QC - if [[ $micaq == "TRUE" ]]; then - Info "MICA qsub - QC Subject processing" - # Info "Setting a warper to run on mica.q" - Do_cmd qsub -q mica.q -pe smp $threads -l h_vmem=6G -N ${jobName} -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC - # all.q - Subject QC - elif [[ $qall == "TRUE" ]]; then - Info "all.q qsub - QC Subject processing" - # Info "Setting a warper to run on all.q" - Do_cmd qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N ${jobName} -e ${log_file_str}.e -o ${log_file_str}.txt \ - $COMMAND $PROC - else - # LOCAL - Subject QC - $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt - fi -fi - -# -----------------------------------------------------------------------------------------------# -# Total Running Time -lopuu=$(date +%s) -eri=$(echo "$lopuu - $aloita" | bc) -eri=$(echo print $eri/60 | perl) - -# Cleanup if processing was local -if [ $PROC == "LOCAL" ] || [ "$mica" = "TRUE" ]; then - cleanup "$tmpDir/*_micapipe*-${id}*" "$nocleanup" "$here" -fi -Title "GLOBAL micapipe running time with $PROC processing:\033[38;5;220m $(printf "%0.3f\n" ${eri}) minutes \033[38;5;141m" From b5a1268073ebe027adcc3eac68e5779edf1937bc Mon Sep 17 00:00:00 2001 From: Yigu Zhou <94867463+shyu2kko@users.noreply.github.com> Date: Thu, 21 Mar 2024 11:16:35 -0400 Subject: [PATCH 07/11] Delete submit_reprocess.sh --- submit_reprocess.sh | 24 ------------------------ 1 file changed, 24 deletions(-) delete mode 100755 submit_reprocess.sh diff --git a/submit_reprocess.sh b/submit_reprocess.sh deleted file mode 100755 index db076ed7..00000000 --- a/submit_reprocess.sh +++ /dev/null @@ -1,24 +0,0 @@ -#!/bin/bash - -# this re-processes functional scans for the data release -# without bandpass - -MICAPIPE=/mica/mica1/03_projects/yigu/software/micapipe -qc_dir=/mica/mica1/03_projects/yigu/7t_funcQC/release -data_name="BIDS_PNI_release" - -IFS=$'\n' read -d '' -a subjlist < "${qc_dir}"/data/"${data_name}"_subjects.txt - -for subjid in ${subjlist[@]}; do - - for sesid in 01 02 03; do - - idBIDS=sub-${subjid}_ses-${sesid} - echo "========================reprocessing without filter===================" - echo $idBIDS - - sh ${MICAPIPE}/7tqc_functest.sh $subjid $sesid - - done -done -echo ":::::::::::::::::::::::done reprocessing, check if ready for tedana QC::::::::::::::::::::" \ No newline at end of file From c614ae77510c51466cc8941ed6137bf31577eb6b Mon Sep 17 00:00:00 2001 From: Yigu Zhou <94867463+shyu2kko@users.noreply.github.com> Date: Thu, 21 Mar 2024 11:16:58 -0400 Subject: [PATCH 08/11] Delete nohup.out --- nohup.out | 94640 ---------------------------------------------------- 1 file changed, 94640 deletions(-) delete mode 100644 nohup.out diff --git a/nohup.out b/nohup.out deleted file mode 100644 index ae016aae..00000000 --- a/nohup.out +++ /dev/null @@ -1,94640 +0,0 @@ -========================reprocessing without filter=================== -sub-PNC001_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC001 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC001 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC001 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC001 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 22:57:24 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 22:57:24 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-1_bold.nii.gz is 37.500004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 22:59:28 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:01:34 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:01:48 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.34 (mm) at sub-brick 177 -++ Max delta displ in automask = 0.23 (mm) at sub-brick 206 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:15:02 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:15:20 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-2_bold.nii.gz is 37.500004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:17:28 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:19:37 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-01/func/sub-PNC001_ses-01_task-rest_echo-3_bold.nii.gz is 37.500004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:21:49 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.683 -2.097 1.790 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.5 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.727 -3.371 3.159 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 73.1 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:26:37 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.899999737739563 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:27:05 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x556f002b96f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [107.102, 60.5536, -118.798] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556f00130730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x556f002d0320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x556f002bcfa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.8093, 121.5, -129.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556f002c2e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x556f00acd230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x556f00acb5c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [107.102, 60.5536, -118.798] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556f002bf3f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x556f015f7450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x556f00ac9da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.8093, 121.5, -129.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556f002c6360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x556f01df1780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.684097482949e-01, 1.797693134862e+308, 2.1739e-01, 2.1739e-01, - 2DIAGNOSTIC, 2, -7.722058692756e-01, 1.797693134862e+308, 2.1879e-01, 1.4009e-03, - 2DIAGNOSTIC, 3, -7.739926935655e-01, 1.797693134862e+308, 2.2022e-01, 1.4319e-03, - 2DIAGNOSTIC, 4, -7.757289564199e-01, 1.797693134862e+308, 2.2166e-01, 1.4360e-03, - 2DIAGNOSTIC, 5, -7.785032033207e-01, 1.797693134862e+308, 2.2309e-01, 1.4281e-03, - 2DIAGNOSTIC, 6, -7.849556631314e-01, 1.797693134862e+308, 2.2476e-01, 1.6661e-03, - 2DIAGNOSTIC, 7, -7.853440315376e-01, 1.797693134862e+308, 2.2633e-01, 1.5740e-03, - 2DIAGNOSTIC, 8, -7.863460767953e-01, 1.797693134862e+308, 2.2781e-01, 1.4830e-03, - 2DIAGNOSTIC, 9, -7.876342019866e-01, 1.797693134862e+308, 2.2928e-01, 1.4679e-03, - 2DIAGNOSTIC, 10, -7.867991199121e-01, 1.682817417802e-03, 2.3237e-01, 3.0921e-03, - 2DIAGNOSTIC, 11, -7.868787017038e-01, 1.258824581556e-03, 2.3391e-01, 1.5399e-03, - 2DIAGNOSTIC, 12, -7.872858629780e-01, 9.205518407312e-04, 2.3538e-01, 1.4639e-03, - 2DIAGNOSTIC, 13, -7.885327816167e-01, 6.378010561042e-04, 2.3687e-01, 1.4892e-03, - 2DIAGNOSTIC, 14, -7.900693312336e-01, 4.217495729682e-04, 2.3902e-01, 2.1560e-03, - 2DIAGNOSTIC, 15, -7.909384914716e-01, 2.803683992397e-04, 2.4048e-01, 1.4620e-03, - 2DIAGNOSTIC, 16, -7.917736996217e-01, 2.973735960695e-04, 2.4200e-01, 1.5140e-03, - 2DIAGNOSTIC, 17, -7.976603959519e-01, 4.182357544596e-04, 2.4346e-01, 1.4582e-03, - 2DIAGNOSTIC, 18, -8.149035737765e-01, 8.485538928156e-04, 2.4493e-01, 1.4770e-03, - 2DIAGNOSTIC, 19, -8.328186184858e-01, 1.508812528669e-03, 2.4663e-01, 1.6999e-03, - 2DIAGNOSTIC, 20, -8.101239353774e-01, 1.535444473459e-03, 2.5017e-01, 3.5400e-03, - 2DIAGNOSTIC, 21, -8.105719201337e-01, 1.445187510473e-03, 2.5166e-01, 1.4861e-03, - 2DIAGNOSTIC, 22, -8.121019567559e-01, 1.257520845851e-03, 2.5313e-01, 1.4760e-03, - 2DIAGNOSTIC, 23, -8.127011787512e-01, 9.853391625870e-04, 2.5458e-01, 1.4479e-03, - 2DIAGNOSTIC, 24, -8.131331048785e-01, 6.707681495836e-04, 2.5604e-01, 1.4620e-03, - 2DIAGNOSTIC, 25, -8.134156306702e-01, 3.451253030953e-04, 2.5751e-01, 1.4701e-03, - 2DIAGNOSTIC, 26, -8.146369147539e-01, 4.672914689343e-05, 2.5897e-01, 1.4510e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.324281030697e-01, 1.797693134862e+308, 3.0521e-01, 4.6249e-02, - 2DIAGNOSTIC, 2, -4.319020309533e-01, 1.797693134862e+308, 3.0772e-01, 2.5091e-03, - 2DIAGNOSTIC, 3, -4.329840687971e-01, 1.797693134862e+308, 3.1041e-01, 2.6839e-03, - 2DIAGNOSTIC, 4, -4.346966428035e-01, 1.797693134862e+308, 3.1294e-01, 2.5330e-03, - 2DIAGNOSTIC, 5, -4.361237075399e-01, 1.797693134862e+308, 3.1531e-01, 2.3720e-03, - 2DIAGNOSTIC, 6, -4.373333662910e-01, 1.797693134862e+308, 3.1760e-01, 2.2850e-03, - 2DIAGNOSTIC, 7, -4.466636378544e-01, 1.797693134862e+308, 3.2013e-01, 2.5308e-03, - 2DIAGNOSTIC, 8, -4.591480756284e-01, 1.797693134862e+308, 3.2237e-01, 2.2461e-03, - 2DIAGNOSTIC, 9, -4.689549573255e-01, 1.797693134862e+308, 3.2495e-01, 2.5790e-03, - 2DIAGNOSTIC, 10, -4.873821442237e-01, 7.095004225791e-03, 3.2818e-01, 3.2299e-03, - 2DIAGNOSTIC, 11, -5.017671478144e-01, 8.795020876305e-03, 3.3085e-01, 2.6650e-03, - 2DIAGNOSTIC, 12, -5.038514051326e-01, 9.467713571238e-03, 3.3364e-01, 2.7881e-03, - 2DIAGNOSTIC, 13, -5.149323941327e-01, 9.745163474623e-03, 3.3703e-01, 3.3972e-03, - 2DIAGNOSTIC, 14, -5.152270163885e-01, 9.179156206246e-03, 3.3942e-01, 2.3890e-03, - 2DIAGNOSTIC, 15, -5.335930010541e-01, 8.644929288380e-03, 3.4177e-01, 2.3479e-03, - 2DIAGNOSTIC, 16, -5.392476416986e-01, 7.629010465380e-03, 3.4411e-01, 2.3389e-03, - 2DIAGNOSTIC, 17, -5.512014015785e-01, 6.786815111001e-03, 3.4676e-01, 2.6479e-03, - 2DIAGNOSTIC, 18, -5.690322171986e-01, 6.409855627087e-03, 3.4907e-01, 2.3148e-03, - 2DIAGNOSTIC, 19, -5.908191530869e-01, 6.423086628268e-03, 3.5235e-01, 3.2759e-03, - 2DIAGNOSTIC, 20, -5.992430904572e-01, 6.589496392734e-03, 3.5758e-01, 5.2309e-03, - 2DIAGNOSTIC, 21, -5.995627455996e-01, 6.532616433899e-03, 3.6075e-01, 3.1700e-03, - 2DIAGNOSTIC, 22, -6.000756657782e-01, 5.947593407248e-03, 3.6351e-01, 2.7590e-03, - 2DIAGNOSTIC, 23, -6.009064346566e-01, 5.160341840598e-03, 3.6662e-01, 3.1099e-03, - 2DIAGNOSTIC, 24, -6.016592954358e-01, 3.976979523331e-03, 3.6948e-01, 2.8608e-03, - 2DIAGNOSTIC, 25, -6.019662422646e-01, 2.945991607685e-03, 3.7244e-01, 2.9659e-03, - 2DIAGNOSTIC, 26, -6.029599379024e-01, 1.875993861163e-03, 3.7545e-01, 3.0079e-03, - 2DIAGNOSTIC, 27, -6.044945809574e-01, 9.910942612018e-04, 3.7838e-01, 2.9302e-03, - 2DIAGNOSTIC, 28, -6.056054855254e-01, 4.413507807327e-04, 3.8130e-01, 2.9140e-03, - 2DIAGNOSTIC, 29, -6.082004964843e-01, 3.418191504259e-04, 3.8403e-01, 2.7330e-03, - 2DIAGNOSTIC, 30, -6.100897651796e-01, 4.012572210681e-04, 3.8718e-01, 3.1550e-03, - 2DIAGNOSTIC, 31, -6.106647282472e-01, 4.336292177133e-04, 3.9047e-01, 3.2861e-03, - 2DIAGNOSTIC, 32, -6.056998491957e-01, 3.492829853676e-04, 3.9402e-01, 3.5539e-03, - 2DIAGNOSTIC, 33, -6.077867001216e-01, 2.868017191730e-04, 3.9682e-01, 2.8000e-03, - 2DIAGNOSTIC, 34, -6.237024986813e-01, 4.570227314422e-04, 3.9967e-01, 2.8501e-03, - 2DIAGNOSTIC, 35, -6.315301359454e-01, 6.861843953767e-04, 4.0286e-01, 3.1879e-03, - 2DIAGNOSTIC, 36, -6.352717306656e-01, 9.043397298407e-04, 4.0832e-01, 5.4569e-03, - 2DIAGNOSTIC, 37, -6.352753343424e-01, 1.049714092813e-03, 4.1187e-01, 3.5481e-03, - 2DIAGNOSTIC, 38, -6.361808061732e-01, 1.114882495662e-03, 4.1444e-01, 2.5721e-03, - 2DIAGNOSTIC, 39, -6.374952922437e-01, 1.116704823971e-03, 4.1701e-01, 2.5749e-03, - 2DIAGNOSTIC, 40, -6.391603135099e-01, 1.054355406048e-03, 4.1967e-01, 2.6519e-03, - 2DIAGNOSTIC, 41, -6.412670857037e-01, 9.326022368670e-04, 4.2257e-01, 2.9089e-03, - 2DIAGNOSTIC, 42, -6.441658613637e-01, 7.064526862757e-04, 4.2600e-01, 3.4242e-03, - 2DIAGNOSTIC, 43, -6.444833810603e-01, 4.493989892540e-04, 4.2830e-01, 2.3050e-03, - 2DIAGNOSTIC, 44, -6.450814137011e-01, 3.508142747224e-04, 4.3060e-01, 2.2941e-03, - 2DIAGNOSTIC, 45, -6.458468977888e-01, 3.188815787693e-04, 4.3296e-01, 2.3649e-03, - 2DIAGNOSTIC, 46, -6.471010662300e-01, 3.123500089368e-04, 4.3565e-01, 2.6829e-03, - 2DIAGNOSTIC, 47, -6.474028604401e-01, 2.790298394571e-04, 4.3830e-01, 2.6569e-03, - 2DIAGNOSTIC, 48, -6.478668212121e-01, 2.351198205761e-04, 4.4076e-01, 2.4581e-03, - 2DIAGNOSTIC, 49, -6.505834171398e-01, 2.119682170315e-04, 4.4374e-01, 2.9769e-03, - 2DIAGNOSTIC, 50, -6.573388898485e-01, 2.520827310948e-04, 4.4715e-01, 3.4089e-03, - 2DIAGNOSTIC, 51, -6.627264331343e-01, 3.365598450709e-04, 4.5035e-01, 3.2001e-03, - 2DIAGNOSTIC, 52, -6.656793216547e-01, 4.403254981991e-04, 4.5391e-01, 3.5670e-03, - 2DIAGNOSTIC, 53, -6.669630729715e-01, 5.131199226528e-04, 4.5622e-01, 2.3069e-03, - 2DIAGNOSTIC, 54, -6.708747688187e-01, 5.747163619188e-04, 4.5884e-01, 2.6181e-03, - 2DIAGNOSTIC, 55, -6.722276311270e-01, 5.956179319447e-04, 4.6149e-01, 2.6550e-03, - 2DIAGNOSTIC, 56, -6.731520650123e-01, 5.771052384785e-04, 4.6407e-01, 2.5780e-03, - 2DIAGNOSTIC, 57, -6.733005758390e-01, 5.088527543200e-04, 4.6641e-01, 2.3360e-03, - 2DIAGNOSTIC, 58, -6.733038244884e-01, 3.990881926851e-04, 4.6906e-01, 2.6522e-03, - 2DIAGNOSTIC, 59, -6.733344424370e-01, 2.767299027696e-04, 4.7135e-01, 2.2941e-03, - 2DIAGNOSTIC, 60, -6.732873594747e-01, 1.853519182824e-04, 4.7604e-01, 4.6809e-03, - 2DIAGNOSTIC, 61, -6.732876335460e-01, 1.219542874062e-04, 4.7947e-01, 3.4370e-03, - 2DIAGNOSTIC, 62, -6.732876429725e-01, 7.229632264033e-05, 4.8264e-01, 3.1638e-03, - 2DIAGNOSTIC, 63, -6.732876461663e-01, 2.667383268834e-05, 4.8617e-01, 3.5291e-03, - 2DIAGNOSTIC, 64, -6.732876481192e-01, 9.181795333421e-06, 4.8948e-01, 3.3162e-03, - 2DIAGNOSTIC, 65, -6.732876485566e-01, 1.221844792121e-06, 4.9212e-01, 2.6391e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.957757026030e-01, 1.797693134862e+308, 5.6041e-01, 6.8289e-02, - 2DIAGNOSTIC, 2, -4.965363756068e-01, 1.797693134862e+308, 5.7217e-01, 1.1761e-02, - 2DIAGNOSTIC, 3, -4.978251444741e-01, 1.797693134862e+308, 5.8472e-01, 1.2554e-02, - 2DIAGNOSTIC, 4, -4.997686540757e-01, 1.797693134862e+308, 5.9732e-01, 1.2597e-02, - 2DIAGNOSTIC, 5, -5.021959200093e-01, 1.797693134862e+308, 6.0984e-01, 1.2522e-02, - 2DIAGNOSTIC, 6, -5.045422969313e-01, 1.797693134862e+308, 6.2177e-01, 1.1927e-02, - 2DIAGNOSTIC, 7, -5.067189034624e-01, 1.797693134862e+308, 6.3350e-01, 1.1727e-02, - 2DIAGNOSTIC, 8, -5.072583155262e-01, 1.797693134862e+308, 6.4679e-01, 1.3289e-02, - 2DIAGNOSTIC, 9, -5.077210800292e-01, 1.797693134862e+308, 6.6745e-01, 2.0661e-02, - 2DIAGNOSTIC, 10, -5.077743362262e-01, 1.814101255411e-03, 6.8177e-01, 1.4324e-02, - 2DIAGNOSTIC, 11, -5.079505635953e-01, 1.462063148344e-03, 6.9412e-01, 1.2349e-02, - 2DIAGNOSTIC, 12, -5.080444071139e-01, 1.077804225763e-03, 7.0760e-01, 1.3484e-02, - 2DIAGNOSTIC, 13, -5.080737526832e-01, 7.130351981824e-04, 7.1911e-01, 1.1510e-02, - 2DIAGNOSTIC, 14, -5.081083638788e-01, 4.154178473674e-04, 7.3087e-01, 1.1754e-02, - 2DIAGNOSTIC, 15, -5.081788645116e-01, 2.125934154198e-04, 7.4404e-01, 1.3175e-02, - 2DIAGNOSTIC, 16, -5.082623415249e-01, 9.966649519977e-05, 7.6202e-01, 1.7978e-02, - 2DIAGNOSTIC, 17, -5.082677147800e-01, 6.296995772487e-05, 7.7514e-01, 1.3120e-02, - 2DIAGNOSTIC, 18, -5.082685239141e-01, 4.135082781579e-05, 7.8773e-01, 1.2585e-02, - 2DIAGNOSTIC, 19, -5.082765564151e-01, 3.237000791781e-05, 7.9967e-01, 1.1944e-02, - 2DIAGNOSTIC, 20, -5.082803488276e-01, 2.289937165229e-05, 8.1022e-01, 1.0545e-02, - 2DIAGNOSTIC, 21, -5.083057964262e-01, 1.765825605203e-05, 8.2222e-01, 1.2003e-02, - 2DIAGNOSTIC, 22, -5.083655095813e-01, 1.530695522065e-05, 8.3569e-01, 1.3471e-02, - 2DIAGNOSTIC, 23, -5.083766557247e-01, 1.285005496660e-05, 8.4774e-01, 1.2054e-02, - 2DIAGNOSTIC, 24, -5.083704439392e-01, 1.018347158386e-05, 8.5979e-01, 1.2045e-02, - 2DIAGNOSTIC, 25, -5.083663745935e-01, 8.365341509761e-06, 8.7057e-01, 1.0782e-02, - 2DIAGNOSTIC, 26, -5.083574918896e-01, 7.622607105802e-06, 8.8236e-01, 1.1787e-02, - 2DIAGNOSTIC, 27, -5.083676608615e-01, 6.637378079953e-06, 8.9408e-01, 1.1723e-02, - 2DIAGNOSTIC, 28, -5.083902503772e-01, 5.665097322867e-06, 9.0599e-01, 1.1914e-02, - 2DIAGNOSTIC, 29, -5.084448073899e-01, 5.555626706066e-06, 9.3750e-01, 3.1507e-02, - 2DIAGNOSTIC, 30, -5.084455404796e-01, 5.101608020475e-06, 9.5167e-01, 1.4165e-02, - 2DIAGNOSTIC, 31, -5.084403239085e-01, 4.651212151513e-06, 9.6537e-01, 1.3708e-02, - 2DIAGNOSTIC, 32, -5.084351826613e-01, 4.849258987555e-06, 9.7872e-01, 1.3349e-02, - 2DIAGNOSTIC, 33, -5.084241691940e-01, 4.662999448776e-06, 9.9087e-01, 1.2142e-02, - 2DIAGNOSTIC, 34, -5.084250072312e-01, 4.037300533485e-06, 1.0033e+00, 1.2438e-02, - 2DIAGNOSTIC, 35, -5.084259025714e-01, 3.107158461021e-06, 1.0166e+00, 1.3324e-02, - 2DIAGNOSTIC, 36, -5.084212699665e-01, 1.821720048832e-06, 1.0304e+00, 1.3809e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.218905166807e-01, 1.797693134862e+308, 1.2492e+00, 2.1879e-01, - Elapsed time (stage 0): 1.3670e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -1.013993493343e+00, 1.797693134862e+308, 4.5016e-02, 4.5016e-02, - 2DIAGNOSTIC, 2, -1.015640820013e+00, 1.797693134862e+308, 4.6928e-02, 1.9121e-03, - 2DIAGNOSTIC, 3, -1.017950928370e+00, 1.797693134862e+308, 4.8564e-02, 1.6360e-03, - 2DIAGNOSTIC, 4, -1.020278227874e+00, 1.797693134862e+308, 5.0152e-02, 1.5881e-03, - 2DIAGNOSTIC, 5, -1.024731667969e+00, 1.797693134862e+308, 5.1809e-02, 1.6570e-03, - 2DIAGNOSTIC, 6, -1.030299963805e+00, 1.797693134862e+308, 5.3456e-02, 1.6470e-03, - 2DIAGNOSTIC, 7, -1.037666169952e+00, 1.797693134862e+308, 5.5342e-02, 1.8861e-03, - 2DIAGNOSTIC, 8, -1.064980618191e+00, 1.797693134862e+308, 5.7508e-02, 2.1651e-03, - 2DIAGNOSTIC, 9, -1.085635625928e+00, 1.797693134862e+308, 6.0294e-02, 2.7869e-03, - 2DIAGNOSTIC, 10, -1.085630412536e+00, 4.782736681163e-03, 6.2334e-02, 2.0392e-03, - 2DIAGNOSTIC, 11, -1.087330404565e+00, 4.871127745193e-03, 6.4267e-02, 1.9338e-03, - 2DIAGNOSTIC, 12, -1.089459313898e+00, 4.595508491597e-03, 6.6260e-02, 1.9929e-03, - 2DIAGNOSTIC, 13, -1.091447487861e+00, 4.028244328164e-03, 6.8265e-02, 2.0051e-03, - 2DIAGNOSTIC, 14, -1.093101521908e+00, 3.248951893434e-03, 7.0357e-02, 2.0919e-03, - 2DIAGNOSTIC, 15, -1.096903860520e+00, 2.434324579772e-03, 7.2907e-02, 2.5499e-03, - 2DIAGNOSTIC, 16, -1.098223994451e+00, 1.624044565067e-03, 7.5216e-02, 2.3091e-03, - 2DIAGNOSTIC, 17, -1.098653526523e+00, 8.774253818277e-04, 7.7800e-02, 2.5840e-03, - 2DIAGNOSTIC, 18, -1.097636419360e+00, 5.179344980262e-04, 8.0056e-02, 2.2559e-03, - 2DIAGNOSTIC, 19, -1.096484485893e+00, 4.243267788151e-04, 8.2038e-02, 1.9820e-03, - 2DIAGNOSTIC, 20, -1.094252415860e+00, 2.708508617408e-04, 8.4281e-02, 2.2430e-03, - 2DIAGNOSTIC, 21, -1.094530660202e+00, 1.321680038629e-04, 8.6272e-02, 1.9910e-03, - 2DIAGNOSTIC, 22, -1.093325764011e+00, 4.920250490509e-06, 8.8312e-02, 2.0399e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.924266901038e-01, 1.797693134862e+308, 1.3869e-01, 5.0380e-02, - 2DIAGNOSTIC, 2, -6.922974656178e-01, 1.797693134862e+308, 1.4197e-01, 3.2802e-03, - 2DIAGNOSTIC, 3, -6.941520491934e-01, 1.797693134862e+308, 1.4516e-01, 3.1900e-03, - 2DIAGNOSTIC, 4, -6.983789255039e-01, 1.797693134862e+308, 1.4773e-01, 2.5661e-03, - 2DIAGNOSTIC, 5, -7.043828553606e-01, 1.797693134862e+308, 1.5011e-01, 2.3849e-03, - 2DIAGNOSTIC, 6, -7.138605675996e-01, 1.797693134862e+308, 1.5240e-01, 2.2871e-03, - 2DIAGNOSTIC, 7, -7.251435647732e-01, 1.797693134862e+308, 1.5476e-01, 2.3601e-03, - 2DIAGNOSTIC, 8, -7.380514013425e-01, 1.797693134862e+308, 1.5855e-01, 3.7849e-03, - 2DIAGNOSTIC, 9, -7.397438361778e-01, 1.797693134862e+308, 1.6204e-01, 3.4990e-03, - 2DIAGNOSTIC, 10, -7.401310734509e-01, 5.339687900409e-03, 1.6551e-01, 3.4690e-03, - 2DIAGNOSTIC, 11, -7.402317103239e-01, 4.862874797280e-03, 1.6835e-01, 2.8379e-03, - 2DIAGNOSTIC, 12, -7.405055320780e-01, 4.033128080585e-03, 1.7109e-01, 2.7418e-03, - 2DIAGNOSTIC, 13, -7.411171382071e-01, 3.041425272452e-03, 1.7392e-01, 2.8279e-03, - 2DIAGNOSTIC, 14, -7.419275604298e-01, 2.062340718913e-03, 1.7674e-01, 2.8141e-03, - 2DIAGNOSTIC, 15, -7.425713710388e-01, 1.204981340651e-03, 1.7992e-01, 3.1810e-03, - 2DIAGNOSTIC, 16, -7.428005625597e-01, 5.819548438629e-04, 1.8310e-01, 3.1829e-03, - 2DIAGNOSTIC, 17, -7.427963027830e-01, 2.328984730146e-04, 1.8624e-01, 3.1402e-03, - 2DIAGNOSTIC, 18, -7.429679155069e-01, 1.855984050362e-04, 1.8905e-01, 2.8121e-03, - 2DIAGNOSTIC, 19, -7.433649528641e-01, 1.688355627779e-04, 1.9224e-01, 3.1850e-03, - 2DIAGNOSTIC, 20, -7.435148692687e-01, 1.484869404826e-04, 1.9507e-01, 2.8329e-03, - 2DIAGNOSTIC, 21, -7.437906152393e-01, 1.236167013535e-04, 1.9803e-01, 2.9602e-03, - 2DIAGNOSTIC, 22, -7.449354908564e-01, 1.148108793944e-04, 2.0128e-01, 3.2461e-03, - 2DIAGNOSTIC, 23, -7.453347141685e-01, 1.125663915293e-04, 2.0408e-01, 2.8040e-03, - 2DIAGNOSTIC, 24, -7.459132587012e-01, 1.223316338157e-04, 2.0658e-01, 2.5051e-03, - 2DIAGNOSTIC, 25, -7.467062065502e-01, 1.422425660154e-04, 2.0966e-01, 3.0730e-03, - 2DIAGNOSTIC, 26, -7.467279262902e-01, 1.509417138272e-04, 2.1242e-01, 2.7630e-03, - 2DIAGNOSTIC, 27, -7.473095922337e-01, 1.531689257322e-04, 2.1530e-01, 2.8839e-03, - 2DIAGNOSTIC, 28, -7.475416107173e-01, 1.461956215029e-04, 2.1842e-01, 3.1161e-03, - 2DIAGNOSTIC, 29, -7.475193437327e-01, 1.310860866089e-04, 2.2123e-01, 2.8059e-03, - 2DIAGNOSTIC, 30, -7.474705203037e-01, 1.061507115007e-04, 2.2371e-01, 2.4869e-03, - 2DIAGNOSTIC, 31, -7.474371414351e-01, 7.569749823215e-05, 2.2642e-01, 2.7030e-03, - 2DIAGNOSTIC, 32, -7.473861866155e-01, 5.330165859059e-05, 2.2879e-01, 2.3739e-03, - 2DIAGNOSTIC, 33, -7.473516989201e-01, 3.145445969049e-05, 2.3121e-01, 2.4219e-03, - 2DIAGNOSTIC, 34, -7.474169087889e-01, 1.518237048158e-05, 2.3398e-01, 2.7671e-03, - 2DIAGNOSTIC, 35, -7.473166277712e-01, 6.234242088898e-06, 2.3642e-01, 2.4440e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.520699146992e-01, 1.797693134862e+308, 3.0235e-01, 6.5924e-02, - 2DIAGNOSTIC, 2, -5.522088160240e-01, 1.797693134862e+308, 3.1592e-01, 1.3568e-02, - 2DIAGNOSTIC, 3, -5.524015113176e-01, 1.797693134862e+308, 3.2882e-01, 1.2902e-02, - 2DIAGNOSTIC, 4, -5.527454416772e-01, 1.797693134862e+308, 3.4168e-01, 1.2860e-02, - 2DIAGNOSTIC, 5, -5.531952646550e-01, 1.797693134862e+308, 3.5490e-01, 1.3222e-02, - 2DIAGNOSTIC, 6, -5.539754419355e-01, 1.797693134862e+308, 3.6777e-01, 1.2873e-02, - 2DIAGNOSTIC, 7, -5.557373389544e-01, 1.797693134862e+308, 3.8214e-01, 1.4364e-02, - 2DIAGNOSTIC, 8, -5.599563004598e-01, 1.797693134862e+308, 3.9778e-01, 1.5648e-02, - 2DIAGNOSTIC, 9, -5.756400619268e-01, 1.797693134862e+308, 4.2798e-01, 3.0192e-02, - 2DIAGNOSTIC, 10, -5.756811817760e-01, 2.594515569307e-03, 4.4303e-01, 1.5053e-02, - 2DIAGNOSTIC, 11, -5.762706821125e-01, 2.952220605363e-03, 4.5756e-01, 1.4527e-02, - 2DIAGNOSTIC, 12, -5.770766965559e-01, 3.032721483644e-03, 4.7254e-01, 1.4980e-02, - 2DIAGNOSTIC, 13, -5.779410011119e-01, 2.862666223056e-03, 4.8691e-01, 1.4373e-02, - 2DIAGNOSTIC, 14, -5.788396007127e-01, 2.493304059167e-03, 4.9957e-01, 1.2660e-02, - 2DIAGNOSTIC, 15, -5.798373927963e-01, 1.995847313452e-03, 5.1241e-01, 1.2842e-02, - 2DIAGNOSTIC, 16, -5.810924974680e-01, 1.450794578435e-03, 5.2571e-01, 1.3297e-02, - 2DIAGNOSTIC, 17, -5.822892010034e-01, 9.266597829995e-04, 5.4021e-01, 1.4503e-02, - 2DIAGNOSTIC, 18, -5.830807112602e-01, 5.033712311238e-04, 5.5719e-01, 1.6981e-02, - 2DIAGNOSTIC, 19, -5.834544174967e-01, 5.020288118617e-04, 5.6874e-01, 1.1552e-02, - 2DIAGNOSTIC, 20, -5.835625622566e-01, 4.581224555490e-04, 5.8049e-01, 1.1750e-02, - 2DIAGNOSTIC, 21, -5.836557092527e-01, 3.919138329603e-04, 5.9356e-01, 1.3069e-02, - 2DIAGNOSTIC, 22, -5.836949327434e-01, 3.141151895863e-04, 6.0511e-01, 1.1550e-02, - 2DIAGNOSTIC, 23, -5.838600989834e-01, 2.360415115386e-04, 6.1884e-01, 1.3727e-02, - 2DIAGNOSTIC, 24, -5.839875927491e-01, 1.637564676656e-04, 6.3859e-01, 1.9751e-02, - 2DIAGNOSTIC, 25, -5.840089957966e-01, 1.021198497362e-04, 6.5119e-01, 1.2600e-02, - 2DIAGNOSTIC, 26, -5.841205814296e-01, 6.160033206752e-05, 6.6384e-01, 1.2646e-02, - 2DIAGNOSTIC, 27, -5.842169686755e-01, 4.186080003127e-05, 6.7786e-01, 1.4025e-02, - 2DIAGNOSTIC, 28, -5.842510397034e-01, 3.411718928296e-05, 7.0188e-01, 2.4021e-02, - 2DIAGNOSTIC, 29, -5.842468699222e-01, 3.007962224758e-05, 7.1395e-01, 1.2063e-02, - 2DIAGNOSTIC, 30, -5.842522444506e-01, 2.547378578997e-05, 7.2594e-01, 1.1996e-02, - 2DIAGNOSTIC, 31, -5.842579072848e-01, 2.045433712948e-05, 7.3792e-01, 1.1974e-02, - 2DIAGNOSTIC, 32, -5.842678264800e-01, 1.459439868653e-05, 7.4965e-01, 1.1735e-02, - 2DIAGNOSTIC, 33, -5.842871840097e-01, 1.053111176306e-05, 7.6155e-01, 1.1896e-02, - 2DIAGNOSTIC, 34, -5.843177147594e-01, 8.127045456510e-06, 7.7352e-01, 1.1970e-02, - 2DIAGNOSTIC, 35, -5.843670498320e-01, 6.149493541288e-06, 7.8571e-01, 1.2192e-02, - 2DIAGNOSTIC, 36, -5.844689196926e-01, 6.667230358224e-06, 7.9916e-01, 1.3454e-02, - 2DIAGNOSTIC, 37, -5.846347577774e-01, 1.006313558885e-05, 8.1129e-01, 1.2127e-02, - 2DIAGNOSTIC, 38, -5.848911533579e-01, 1.613372192425e-05, 8.3089e-01, 1.9603e-02, - 2DIAGNOSTIC, 39, -5.849029104053e-01, 2.047296307995e-05, 8.4311e-01, 1.2216e-02, - 2DIAGNOSTIC, 40, -5.849143268716e-01, 2.298023760927e-05, 8.5801e-01, 1.4897e-02, - 2DIAGNOSTIC, 41, -5.849718005657e-01, 2.402959193894e-05, 8.7045e-01, 1.2444e-02, - 2DIAGNOSTIC, 42, -5.850277547909e-01, 2.352505174579e-05, 8.8539e-01, 1.4943e-02, - 2DIAGNOSTIC, 43, -5.850706216978e-01, 2.153336049206e-05, 9.0206e-01, 1.6664e-02, - 2DIAGNOSTIC, 44, -5.850975391522e-01, 1.830864809011e-05, 9.1387e-01, 1.1817e-02, - 2DIAGNOSTIC, 45, -5.851397148782e-01, 1.458678367360e-05, 9.2738e-01, 1.3504e-02, - 2DIAGNOSTIC, 46, -5.851448977821e-01, 1.081560721184e-05, 9.3910e-01, 1.1724e-02, - 2DIAGNOSTIC, 47, -5.851553969543e-01, 8.004456441401e-06, 9.5128e-01, 1.2181e-02, - 2DIAGNOSTIC, 48, -5.851663515359e-01, 7.350369415925e-06, 9.6350e-01, 1.2217e-02, - 2DIAGNOSTIC, 49, -5.851940636073e-01, 6.483262821530e-06, 9.7588e-01, 1.2380e-02, - 2DIAGNOSTIC, 50, -5.852322988929e-01, 5.565044011713e-06, 9.8929e-01, 1.3408e-02, - 2DIAGNOSTIC, 51, -5.852799150167e-01, 5.208925463983e-06, 1.0062e+00, 1.6925e-02, - 2DIAGNOSTIC, 52, -5.852918039423e-01, 5.059724930489e-06, 1.0184e+00, 1.2193e-02, - 2DIAGNOSTIC, 53, -5.853050655201e-01, 5.013286515844e-06, 1.0307e+00, 1.2288e-02, - 2DIAGNOSTIC, 54, -5.853233524570e-01, 4.946658545286e-06, 1.0432e+00, 1.2475e-02, - 2DIAGNOSTIC, 55, -5.853969971619e-01, 5.489752147068e-06, 1.0568e+00, 1.3638e-02, - 2DIAGNOSTIC, 56, -5.854768319796e-01, 6.266164533985e-06, 1.0735e+00, 1.6734e-02, - 2DIAGNOSTIC, 57, -5.854799451902e-01, 6.577696979305e-06, 1.0919e+00, 1.8347e-02, - 2DIAGNOSTIC, 58, -5.854787939955e-01, 6.401717634500e-06, 1.1064e+00, 1.4471e-02, - 2DIAGNOSTIC, 59, -5.854755381162e-01, 5.876248500639e-06, 1.1206e+00, 1.4284e-02, - 2DIAGNOSTIC, 60, -5.854722032656e-01, 5.120627813705e-06, 1.1331e+00, 1.2497e-02, - 2DIAGNOSTIC, 61, -5.854728456691e-01, 4.324907719205e-06, 1.1460e+00, 1.2889e-02, - 2DIAGNOSTIC, 62, -5.854739994245e-01, 3.297340122943e-06, 1.1605e+00, 1.4519e-02, - 2DIAGNOSTIC, 63, -5.854746046166e-01, 2.155575689736e-06, 1.1736e+00, 1.3044e-02, - 2DIAGNOSTIC, 64, -5.854738563677e-01, 1.017860320175e-06, 1.1889e+00, 1.5297e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.817510752875e-01, 1.797693134862e+308, 1.3812e+00, 1.9227e-01, - Elapsed time (stage 1): 1.4063e+00 - - -Total elapsed time: 2.7745e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:27:13 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 34 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 76 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 83.43% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 83.43% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[15555 12257 12499 3826 21499 15814 1031 0 0 1980 1373 6265 - 0 2832 571 1082 483 6748 551 1175 0 0 0 0 - 373 223 0 0 0 0 0 191 0 0] -[186958 94557 98486 40832 17225 19670 21702 5380 9554 15305 - 13629 9980 9934 8946 9739 11120 2346 7041 2580 1168 - 1292 1087 1308 1604 784 928 350 914 1188 990 - 785 607 0 576] -[ 0 937 13474 10448 2268 9813 495 593 14772 210 2111 13669 - 19529 627 527 5425 13356 1950 0 0 0 0 418 186 - 579 0 11163 383 0 9208 0 0 179 242] -[ 0 19398 1867 0 32947 734 14934 8529 160146 7885 - 0 264 427 512 16107 0 147344 22582 2512 944 - 2229 225 5435 2675 462 1043 152378 15556 1454 173 - 2628 5427 4636 3008] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:37:39 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:37:44 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:31 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:31 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:31 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:42 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:41:47 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC001 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:43:04 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.899999737739563 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:43:29 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:46:28 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:46:29 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:47:49 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:47:49 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55e24e138d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [75.2585, 121.949, -129.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e24dfaf730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc9d3f83010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55e24e13c020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 61.0027, -119.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e24e1420c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc9d08c4010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55e24e152840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [75.2585, 121.949, -129.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e24e13e890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc9cbbf0010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55e24e1563e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 61.0027, -119.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e24e145130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc9c8531010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.877033114309e-01, 1.797693134862e+308, 2.5204e-01, 2.5204e-01, - 2DIAGNOSTIC, 2, -4.901131791822e-01, 1.797693134862e+308, 2.5338e-01, 1.3390e-03, - 2DIAGNOSTIC, 3, -4.933533540394e-01, 1.797693134862e+308, 2.5473e-01, 1.3490e-03, - 2DIAGNOSTIC, 4, -4.967956689342e-01, 1.797693134862e+308, 2.5603e-01, 1.2951e-03, - 2DIAGNOSTIC, 5, -5.087479400760e-01, 1.797693134862e+308, 2.5739e-01, 1.3661e-03, - 2DIAGNOSTIC, 6, -5.162271248019e-01, 1.797693134862e+308, 2.5870e-01, 1.3061e-03, - 2DIAGNOSTIC, 7, -5.331212362346e-01, 1.797693134862e+308, 2.5999e-01, 1.2910e-03, - 2DIAGNOSTIC, 8, -5.776495245995e-01, 1.797693134862e+308, 2.6186e-01, 1.8730e-03, - 2DIAGNOSTIC, 9, -6.198207397678e-01, 1.797693134862e+308, 2.6468e-01, 2.8181e-03, - 2DIAGNOSTIC, 10, -6.207125220599e-01, 1.721780923458e-02, 2.6633e-01, 1.6429e-03, - 2DIAGNOSTIC, 11, -6.208748152057e-01, 1.731545436775e-02, 2.6820e-01, 1.8702e-03, - 2DIAGNOSTIC, 12, -6.201401836327e-01, 1.595037563372e-02, 2.6981e-01, 1.6141e-03, - 2DIAGNOSTIC, 13, -6.204157746072e-01, 1.350247502721e-02, 2.7137e-01, 1.5609e-03, - 2DIAGNOSTIC, 14, -6.212872167547e-01, 1.035068764578e-02, 2.7298e-01, 1.6060e-03, - 2DIAGNOSTIC, 15, -6.222722385908e-01, 7.176166372116e-03, 2.7500e-01, 2.0232e-03, - 2DIAGNOSTIC, 16, -6.225901195139e-01, 4.050406386760e-03, 2.7661e-01, 1.6141e-03, - 2DIAGNOSTIC, 17, -6.228188651283e-01, 1.436242664357e-03, 2.7845e-01, 1.8392e-03, - 2DIAGNOSTIC, 18, -6.241973595964e-01, 2.376884927703e-04, 2.8033e-01, 1.8759e-03, - 2DIAGNOSTIC, 19, -6.252949011233e-01, 2.756123732247e-04, 2.8219e-01, 1.8570e-03, - 2DIAGNOSTIC, 20, -6.253936338712e-01, 3.074215325922e-04, 2.8405e-01, 1.8671e-03, - 2DIAGNOSTIC, 21, -6.249256956074e-01, 3.019222405584e-04, 2.8567e-01, 1.6170e-03, - 2DIAGNOSTIC, 22, -6.255471669614e-01, 2.674018822419e-04, 2.8778e-01, 2.1071e-03, - 2DIAGNOSTIC, 23, -6.256197962582e-01, 2.174332216921e-04, 2.8938e-01, 1.6000e-03, - 2DIAGNOSTIC, 24, -6.262717136121e-01, 1.815345646164e-04, 2.9117e-01, 1.7889e-03, - 2DIAGNOSTIC, 25, -6.266542305897e-01, 1.583524622289e-04, 2.9350e-01, 2.3310e-03, - 2DIAGNOSTIC, 26, -6.267726838624e-01, 1.310075913234e-04, 2.9534e-01, 1.8480e-03, - 2DIAGNOSTIC, 27, -6.268067662226e-01, 9.791600685749e-05, 2.9695e-01, 1.6079e-03, - 2DIAGNOSTIC, 28, -6.263892003241e-01, 7.406531739028e-05, 2.9880e-01, 1.8461e-03, - 2DIAGNOSTIC, 29, -6.268983555174e-01, 7.167593390312e-05, 3.0048e-01, 1.6789e-03, - 2DIAGNOSTIC, 30, -6.264788698017e-01, 5.758874083132e-05, 3.0210e-01, 1.6181e-03, - 2DIAGNOSTIC, 31, -6.266031978579e-01, 3.385275001520e-05, 3.0392e-01, 1.8280e-03, - 2DIAGNOSTIC, 32, -6.266372726517e-01, 1.851969414449e-05, 3.0629e-01, 2.3630e-03, - 2DIAGNOSTIC, 33, -6.266715497502e-01, 3.853641910523e-06, 3.0794e-01, 1.6561e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.707629494228e-01, 1.797693134862e+308, 5.5903e-01, 2.5109e-01, - 2DIAGNOSTIC, 2, -4.696469049592e-01, 1.797693134862e+308, 5.6160e-01, 2.5702e-03, - 2DIAGNOSTIC, 3, -4.747426802525e-01, 1.797693134862e+308, 5.6430e-01, 2.7041e-03, - 2DIAGNOSTIC, 4, -4.761020184679e-01, 1.797693134862e+308, 5.6686e-01, 2.5592e-03, - 2DIAGNOSTIC, 5, -4.755039943030e-01, 1.797693134862e+308, 5.6892e-01, 2.0549e-03, - 2DIAGNOSTIC, 6, -4.778647396206e-01, 1.797693134862e+308, 5.7159e-01, 2.6689e-03, - 2DIAGNOSTIC, 7, -4.795068317081e-01, 1.797693134862e+308, 5.7420e-01, 2.6121e-03, - 2DIAGNOSTIC, 8, -4.790952010813e-01, 1.797693134862e+308, 5.7729e-01, 3.0940e-03, - 2DIAGNOSTIC, 9, -4.798012494356e-01, 1.797693134862e+308, 5.7981e-01, 2.5141e-03, - 2DIAGNOSTIC, 10, -4.812655031815e-01, 1.459257121131e-03, 5.8232e-01, 2.5139e-03, - 2DIAGNOSTIC, 11, -4.845743311445e-01, 1.365804016960e-03, 5.8612e-01, 3.7959e-03, - 2DIAGNOSTIC, 12, -4.894467228009e-01, 1.339262756769e-03, 5.8841e-01, 2.2981e-03, - 2DIAGNOSTIC, 13, -4.901031522840e-01, 1.454896002912e-03, 5.9067e-01, 2.2571e-03, - 2DIAGNOSTIC, 14, -4.906791417032e-01, 1.510054556389e-03, 5.9294e-01, 2.2690e-03, - 2DIAGNOSTIC, 15, -4.913923420995e-01, 1.423730879509e-03, 5.9612e-01, 3.1829e-03, - 2DIAGNOSTIC, 16, -4.916364189610e-01, 1.309785228949e-03, 5.9838e-01, 2.2531e-03, - 2DIAGNOSTIC, 17, -4.918658829565e-01, 1.152701900223e-03, 6.0093e-01, 2.5539e-03, - 2DIAGNOSTIC, 18, -4.920660071627e-01, 9.011868919793e-04, 6.0319e-01, 2.2640e-03, - 2DIAGNOSTIC, 19, -4.934325952323e-01, 6.594322604016e-04, 6.0543e-01, 2.2390e-03, - 2DIAGNOSTIC, 20, -4.941166881284e-01, 4.422202749772e-04, 6.0864e-01, 3.2029e-03, - 2DIAGNOSTIC, 21, -4.942909007753e-01, 2.988383412625e-04, 6.1180e-01, 3.1660e-03, - 2DIAGNOSTIC, 22, -4.943411049138e-01, 2.727600789924e-04, 6.1406e-01, 2.2562e-03, - 2DIAGNOSTIC, 23, -4.947146891908e-01, 2.498246840402e-04, 6.1629e-01, 2.2290e-03, - 2DIAGNOSTIC, 24, -4.950253599535e-01, 2.260353095533e-04, 6.1857e-01, 2.2800e-03, - 2DIAGNOSTIC, 25, -4.936937929076e-01, 1.681427998455e-04, 6.2114e-01, 2.5718e-03, - 2DIAGNOSTIC, 26, -4.939007769857e-01, 1.105872523774e-04, 6.2338e-01, 2.2440e-03, - 2DIAGNOSTIC, 27, -4.957033204095e-01, 9.107148789426e-05, 6.2687e-01, 3.4831e-03, - 2DIAGNOSTIC, 28, -4.958326343607e-01, 6.915100716190e-05, 6.2915e-01, 2.2810e-03, - 2DIAGNOSTIC, 29, -4.959397718696e-01, 7.206150948934e-05, 6.3172e-01, 2.5699e-03, - 2DIAGNOSTIC, 30, -4.958490616686e-01, 8.057725845673e-05, 6.3398e-01, 2.2581e-03, - 2DIAGNOSTIC, 31, -4.960900948106e-01, 8.898402043495e-05, 6.3652e-01, 2.5492e-03, - 2DIAGNOSTIC, 32, -4.962879413755e-01, 9.182943397782e-05, 6.3873e-01, 2.2080e-03, - 2DIAGNOSTIC, 33, -4.964196146692e-01, 9.418097354288e-05, 6.4102e-01, 2.2910e-03, - 2DIAGNOSTIC, 34, -4.966042370220e-01, 9.723210509624e-05, 6.4328e-01, 2.2590e-03, - 2DIAGNOSTIC, 35, -4.979618961124e-01, 9.168040105733e-05, 6.4616e-01, 2.8791e-03, - 2DIAGNOSTIC, 36, -4.984506427278e-01, 8.763632609482e-05, 6.4871e-01, 2.5461e-03, - 2DIAGNOSTIC, 37, -4.974072594227e-01, 8.743747481485e-05, 6.5253e-01, 3.8180e-03, - 2DIAGNOSTIC, 38, -4.976847838421e-01, 8.604823253353e-05, 6.5474e-01, 2.2149e-03, - 2DIAGNOSTIC, 39, -4.978247418829e-01, 8.010522030380e-05, 6.5700e-01, 2.2571e-03, - 2DIAGNOSTIC, 40, -4.981357563874e-01, 6.944115410537e-05, 6.5925e-01, 2.2511e-03, - 2DIAGNOSTIC, 41, -4.988546874233e-01, 6.614758062214e-05, 6.6156e-01, 2.3122e-03, - 2DIAGNOSTIC, 42, -5.003986579830e-01, 8.109387680329e-05, 6.6391e-01, 2.3460e-03, - 2DIAGNOSTIC, 43, -5.018865039924e-01, 1.093007040561e-04, 6.6792e-01, 4.0171e-03, - 2DIAGNOSTIC, 44, -5.020798165997e-01, 1.299177682291e-04, 6.7012e-01, 2.1980e-03, - 2DIAGNOSTIC, 45, -5.021272903864e-01, 1.554085429336e-04, 6.7262e-01, 2.4951e-03, - 2DIAGNOSTIC, 46, -5.022521839018e-01, 1.732108968709e-04, 6.7512e-01, 2.5051e-03, - 2DIAGNOSTIC, 47, -5.020857632678e-01, 1.584171960731e-04, 6.7730e-01, 2.1791e-03, - 2DIAGNOSTIC, 48, -5.020248340087e-01, 1.316028204041e-04, 6.7952e-01, 2.2218e-03, - 2DIAGNOSTIC, 49, -5.021685329616e-01, 9.691673605558e-05, 6.8172e-01, 2.1961e-03, - 2DIAGNOSTIC, 50, -5.023404932138e-01, 6.014662057295e-05, 6.8399e-01, 2.2671e-03, - 2DIAGNOSTIC, 51, -5.028166958730e-01, 3.233972785802e-05, 6.8648e-01, 2.4939e-03, - 2DIAGNOSTIC, 52, -5.028624760737e-01, 1.970877236824e-05, 6.8961e-01, 3.1340e-03, - 2DIAGNOSTIC, 53, -5.032371182421e-01, 2.605683381985e-05, 6.9217e-01, 2.5580e-03, - 2DIAGNOSTIC, 54, -5.033317811829e-01, 3.271367085173e-05, 6.9445e-01, 2.2790e-03, - 2DIAGNOSTIC, 55, -5.038633978818e-01, 4.200954854746e-05, 6.9702e-01, 2.5649e-03, - 2DIAGNOSTIC, 56, -5.049521396344e-01, 5.936175850591e-05, 6.9982e-01, 2.8021e-03, - 2DIAGNOSTIC, 57, -5.051690664529e-01, 7.074325971698e-05, 7.0206e-01, 2.2380e-03, - 2DIAGNOSTIC, 58, -5.050164005581e-01, 7.300481333268e-05, 7.0461e-01, 2.5508e-03, - 2DIAGNOSTIC, 59, -5.054991766491e-01, 7.453906228076e-05, 7.0679e-01, 2.1868e-03, - 2DIAGNOSTIC, 60, -5.059279033832e-01, 7.435131644327e-05, 7.0936e-01, 2.5640e-03, - 2DIAGNOSTIC, 61, -5.063215770535e-01, 7.502824767467e-05, 7.1153e-01, 2.1751e-03, - 2DIAGNOSTIC, 62, -5.061370643324e-01, 6.717247031392e-05, 7.1401e-01, 2.4760e-03, - 2DIAGNOSTIC, 63, -5.053619467268e-01, 4.985893181698e-05, 7.1649e-01, 2.4829e-03, - 2DIAGNOSTIC, 64, -5.053677727890e-01, 2.941674176041e-05, 7.1898e-01, 2.4910e-03, - 2DIAGNOSTIC, 65, -5.055686358533e-01, 1.282350434810e-05, 7.2163e-01, 2.6510e-03, - 2DIAGNOSTIC, 66, -5.057282486292e-01, 6.183801945100e-06, 7.2465e-01, 3.0169e-03, - 2DIAGNOSTIC, 67, -5.057704590263e-01, 1.585457369779e-06, 7.2717e-01, 2.5170e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.759007612773e-01, 1.797693134862e+308, 9.8881e-01, 2.6164e-01, - 2DIAGNOSTIC, 2, -3.767633307335e-01, 1.797693134862e+308, 1.0012e+00, 1.2400e-02, - 2DIAGNOSTIC, 3, -3.786248392525e-01, 1.797693134862e+308, 1.0139e+00, 1.2687e-02, - 2DIAGNOSTIC, 4, -3.800447181702e-01, 1.797693134862e+308, 1.0264e+00, 1.2491e-02, - 2DIAGNOSTIC, 5, -3.817584522830e-01, 1.797693134862e+308, 1.0385e+00, 1.2144e-02, - 2DIAGNOSTIC, 6, -3.831788083374e-01, 1.797693134862e+308, 1.0511e+00, 1.2595e-02, - 2DIAGNOSTIC, 7, -3.858061773763e-01, 1.797693134862e+308, 1.0638e+00, 1.2706e-02, - 2DIAGNOSTIC, 8, -3.876935212759e-01, 1.797693134862e+308, 1.0837e+00, 1.9898e-02, - 2DIAGNOSTIC, 9, -3.892103826695e-01, 1.797693134862e+308, 1.0963e+00, 1.2521e-02, - 2DIAGNOSTIC, 10, -3.901514294576e-01, 2.557644091146e-03, 1.1109e+00, 1.4695e-02, - 2DIAGNOSTIC, 11, -3.933657465673e-01, 2.447024968338e-03, 1.1275e+00, 1.6556e-02, - 2DIAGNOSTIC, 12, -3.952783646712e-01, 2.299036329919e-03, 1.1429e+00, 1.5388e-02, - 2DIAGNOSTIC, 13, -4.063426514254e-01, 2.691779365567e-03, 1.1554e+00, 1.2514e-02, - 2DIAGNOSTIC, 14, -4.374444988260e-01, 4.444979949795e-03, 1.1681e+00, 1.2675e-02, - 2DIAGNOSTIC, 15, -4.620563367451e-01, 6.740506287598e-03, 1.1837e+00, 1.5592e-02, - 2DIAGNOSTIC, 16, -4.648658408403e-01, 8.266288375578e-03, 1.1960e+00, 1.2305e-02, - 2DIAGNOSTIC, 17, -5.094238757106e-01, 1.074398711361e-02, 1.2119e+00, 1.5921e-02, - 2DIAGNOSTIC, 18, -5.150037167898e-01, 1.213644061501e-02, 1.2238e+00, 1.1897e-02, - 2DIAGNOSTIC, 19, -5.205956130452e-01, 1.247728227316e-02, 1.2359e+00, 1.2140e-02, - 2DIAGNOSTIC, 20, -5.309386517599e-01, 1.200247073951e-02, 1.2535e+00, 1.7549e-02, - 2DIAGNOSTIC, 21, -5.341442269253e-01, 1.068262608201e-02, 1.2674e+00, 1.3965e-02, - 2DIAGNOSTIC, 22, -5.364296804443e-01, 8.641618501434e-03, 1.2819e+00, 1.4418e-02, - 2DIAGNOSTIC, 23, -5.436022463921e-01, 6.508442034929e-03, 1.2964e+00, 1.4500e-02, - 2DIAGNOSTIC, 24, -5.675819479527e-01, 5.445150916232e-03, 1.3110e+00, 1.4678e-02, - 2DIAGNOSTIC, 25, -5.715759479222e-01, 4.701692928501e-03, 1.3236e+00, 1.2599e-02, - 2DIAGNOSTIC, 26, -5.761585134101e-01, 3.747205178064e-03, 1.3381e+00, 1.4495e-02, - 2DIAGNOSTIC, 27, -5.796295177821e-01, 3.641822494145e-03, 1.3576e+00, 1.9427e-02, - 2DIAGNOSTIC, 28, -5.819486610547e-01, 3.374432750991e-03, 1.3706e+00, 1.3018e-02, - 2DIAGNOSTIC, 29, -5.866228083563e-01, 3.015814351000e-03, 1.3853e+00, 1.4749e-02, - 2DIAGNOSTIC, 30, -5.938690429297e-01, 2.753315125508e-03, 1.4001e+00, 1.4757e-02, - 2DIAGNOSTIC, 31, -5.956364179852e-01, 2.353051815650e-03, 1.4147e+00, 1.4583e-02, - 2DIAGNOSTIC, 32, -5.960873663200e-01, 1.816766759025e-03, 1.4271e+00, 1.2420e-02, - 2DIAGNOSTIC, 33, -5.968631211475e-01, 1.282423323613e-03, 1.4414e+00, 1.4281e-02, - 2DIAGNOSTIC, 34, -6.002558099242e-01, 1.134714987206e-03, 1.4579e+00, 1.6503e-02, - 2DIAGNOSTIC, 35, -6.018940170034e-01, 9.791237937307e-04, 1.4708e+00, 1.2895e-02, - 2DIAGNOSTIC, 36, -6.024392853313e-01, 8.230997323476e-04, 1.4836e+00, 1.2837e-02, - 2DIAGNOSTIC, 37, -6.029017447525e-01, 6.628638173441e-04, 1.4983e+00, 1.4667e-02, - 2DIAGNOSTIC, 38, -6.028012390684e-01, 4.830802843427e-04, 1.5152e+00, 1.6931e-02, - 2DIAGNOSTIC, 39, -6.030496218669e-01, 3.369757534093e-04, 1.5302e+00, 1.5009e-02, - 2DIAGNOSTIC, 40, -6.030951637589e-01, 2.695632325604e-04, 1.5462e+00, 1.6015e-02, - 2DIAGNOSTIC, 41, -6.031285903576e-01, 2.057077038328e-04, 1.5589e+00, 1.2664e-02, - 2DIAGNOSTIC, 42, -6.031573422291e-01, 1.329084103971e-04, 1.5715e+00, 1.2615e-02, - 2DIAGNOSTIC, 43, -6.032832091624e-01, 6.232827176430e-05, 1.5859e+00, 1.4380e-02, - 2DIAGNOSTIC, 44, -6.032400720084e-01, 3.138424638862e-05, 1.6014e+00, 1.5515e-02, - 2DIAGNOSTIC, 45, -6.032101762874e-01, 1.875610692839e-05, 1.6158e+00, 1.4379e-02, - 2DIAGNOSTIC, 46, -6.032364890973e-01, 1.179086139178e-05, 1.6303e+00, 1.4485e-02, - 2DIAGNOSTIC, 47, -6.032826648411e-01, 1.009959282221e-05, 1.6427e+00, 1.2446e-02, - 2DIAGNOSTIC, 48, -6.032890491454e-01, 6.420628866268e-06, 1.6573e+00, 1.4619e-02, - 2DIAGNOSTIC, 49, -6.033189711823e-01, 5.476943699106e-06, 1.6720e+00, 1.4692e-02, - 2DIAGNOSTIC, 50, -6.033691566366e-01, 5.186068475205e-06, 1.6881e+00, 1.6049e-02, - 2DIAGNOSTIC, 51, -6.033574900124e-01, 4.697753374232e-06, 1.7015e+00, 1.3433e-02, - 2DIAGNOSTIC, 52, -6.033114354576e-01, 3.628067112047e-06, 1.7138e+00, 1.2320e-02, - 2DIAGNOSTIC, 53, -6.033134415399e-01, 3.652599339682e-06, 1.7262e+00, 1.2384e-02, - 2DIAGNOSTIC, 54, -6.033142821715e-01, 2.975568290112e-06, 1.7399e+00, 1.3686e-02, - 2DIAGNOSTIC, 55, -6.033318569009e-01, 1.968693755384e-06, 1.7540e+00, 1.4078e-02, - 2DIAGNOSTIC, 56, -6.033503391313e-01, 1.294347881913e-06, 1.7699e+00, 1.5971e-02, - 2DIAGNOSTIC, 57, -6.033847812151e-01, 1.352279350084e-06, 1.7861e+00, 1.6130e-02, - 2DIAGNOSTIC, 58, -6.033715579626e-01, 1.268943249439e-06, 1.8057e+00, 1.9636e-02, - 2DIAGNOSTIC, 59, -6.033718210334e-01, 1.385978278205e-06, 1.8196e+00, 1.3934e-02, - 2DIAGNOSTIC, 60, -6.033552331247e-01, 1.718942706719e-06, 1.8318e+00, 1.2110e-02, - 2DIAGNOSTIC, 61, -6.033387301395e-01, 1.697471771249e-06, 1.8459e+00, 1.4117e-02, - 2DIAGNOSTIC, 62, -6.033222020624e-01, 1.036889526570e-06, 1.8599e+00, 1.4026e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.998057679723e-01, 1.797693134862e+308, 2.2938e+00, 4.3389e-01, - 2DIAGNOSTIC, 2, -5.001475865066e-01, 1.797693134862e+308, 2.3817e+00, 8.7922e-02, - 2DIAGNOSTIC, 3, -5.002379223996e-01, 1.797693134862e+308, 2.4812e+00, 9.9486e-02, - 2DIAGNOSTIC, 4, -5.002433308401e-01, 1.797693134862e+308, 2.5952e+00, 1.1400e-01, - 2DIAGNOSTIC, 5, -5.002430160772e-01, 1.797693134862e+308, 2.6939e+00, 9.8707e-02, - 2DIAGNOSTIC, 6, -5.002392187547e-01, 1.797693134862e+308, 2.7941e+00, 1.0022e-01, - 2DIAGNOSTIC, 7, -5.002386557369e-01, 1.797693134862e+308, 2.8934e+00, 9.9218e-02, - 2DIAGNOSTIC, 8, -5.002349196839e-01, 1.797693134862e+308, 3.0071e+00, 1.1375e-01, - 2DIAGNOSTIC, 9, -5.002322381769e-01, 1.797693134862e+308, 3.0941e+00, 8.7038e-02, - 2DIAGNOSTIC, 10, -5.002331974730e-01, 3.139038694105e-05, 3.1763e+00, 8.2145e-02, - 2DIAGNOSTIC, 11, -5.002316887042e-01, 6.420793844136e-06, 3.2701e+00, 9.3839e-02, - 2DIAGNOSTIC, 12, -5.002338425436e-01, 1.466328284835e-06, 3.3680e+00, 9.7890e-02, - 2DIAGNOSTIC, 13, -5.002325969787e-01, 1.265864557551e-06, 3.4511e+00, 8.3080e-02, - 2DIAGNOSTIC, 14, -5.002328108010e-01, 1.431404694399e-06, 3.5636e+00, 1.1252e-01, - 2DIAGNOSTIC, 15, -5.002391607154e-01, 1.882310022142e-06, 3.6622e+00, 9.8565e-02, - 2DIAGNOSTIC, 16, -5.002371797070e-01, 2.084352716467e-06, 3.7485e+00, 8.6333e-02, - 2DIAGNOSTIC, 17, -5.002345771398e-01, 2.154700583366e-06, 3.8504e+00, 1.0189e-01, - 2DIAGNOSTIC, 18, -5.002360640749e-01, 2.127312634381e-06, 3.9382e+00, 8.7843e-02, - 2DIAGNOSTIC, 19, -5.002374276098e-01, 2.025859120146e-06, 4.0508e+00, 1.1252e-01, - 2DIAGNOSTIC, 20, -5.002338387877e-01, 1.823918673288e-06, 4.1377e+00, 8.6933e-02, - 2DIAGNOSTIC, 21, -5.002337236694e-01, 1.577954334787e-06, 4.2379e+00, 1.0016e-01, - 2DIAGNOSTIC, 22, -5.002332438565e-01, 1.396079998967e-06, 4.3336e+00, 9.5753e-02, - 2DIAGNOSTIC, 23, -5.002307242553e-01, 1.140976483030e-06, 4.4130e+00, 7.9405e-02, - 2DIAGNOSTIC, 24, -5.002337200842e-01, 1.001096423224e-06, 4.5081e+00, 9.5119e-02, - 2DIAGNOSTIC, 25, -5.002371218216e-01, 1.124072586539e-06, 4.6039e+00, 9.5721e-02, - 2DIAGNOSTIC, 26, -5.002390517076e-01, 1.251075627505e-06, 4.6898e+00, 8.5988e-02, - 2DIAGNOSTIC, 27, -5.002382135503e-01, 1.292994207210e-06, 4.7877e+00, 9.7841e-02, - 2DIAGNOSTIC, 28, -5.002358926146e-01, 1.305212129231e-06, 4.8979e+00, 1.1020e-01, - 2DIAGNOSTIC, 29, -5.002353777996e-01, 1.319745726140e-06, 5.0028e+00, 1.0489e-01, - 2DIAGNOSTIC, 30, -5.002344648811e-01, 1.224212244209e-06, 5.0918e+00, 8.8975e-02, - 2DIAGNOSTIC, 31, -5.002340663910e-01, 1.109409095097e-06, 5.1872e+00, 9.5470e-02, - Elapsed time (stage 0): 5.3380e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.924056977014e-01, 1.797693134862e+308, 2.1563e-01, 2.1563e-01, - 2DIAGNOSTIC, 2, -7.945502365383e-01, 1.797693134862e+308, 2.1695e-01, 1.3139e-03, - 2DIAGNOSTIC, 3, -7.994270402790e-01, 1.797693134862e+308, 2.1824e-01, 1.2958e-03, - 2DIAGNOSTIC, 4, -8.072393426723e-01, 1.797693134862e+308, 2.1952e-01, 1.2729e-03, - 2DIAGNOSTIC, 5, -8.180778101041e-01, 1.797693134862e+308, 2.2087e-01, 1.3540e-03, - 2DIAGNOSTIC, 6, -8.296005351073e-01, 1.797693134862e+308, 2.2220e-01, 1.3270e-03, - 2DIAGNOSTIC, 7, -8.469875161987e-01, 1.797693134862e+308, 2.2351e-01, 1.3180e-03, - 2DIAGNOSTIC, 8, -8.665094250210e-01, 1.797693134862e+308, 2.2575e-01, 2.2402e-03, - 2DIAGNOSTIC, 9, -8.735708120663e-01, 1.797693134862e+308, 2.2709e-01, 1.3402e-03, - 2DIAGNOSTIC, 10, -8.767827160976e-01, 7.564995652126e-03, 2.2861e-01, 1.5109e-03, - 2DIAGNOSTIC, 11, -8.876774400747e-01, 7.199050873356e-03, 2.3039e-01, 1.7869e-03, - 2DIAGNOSTIC, 12, -8.909437558288e-01, 6.393822879967e-03, 2.3205e-01, 1.6592e-03, - 2DIAGNOSTIC, 13, -8.955481828754e-01, 5.382090461237e-03, 2.3423e-01, 2.1770e-03, - 2DIAGNOSTIC, 14, -8.964176383105e-01, 4.243735772722e-03, 2.3591e-01, 1.6840e-03, - 2DIAGNOSTIC, 15, -8.986149455404e-01, 3.172503723266e-03, 2.3735e-01, 1.4360e-03, - 2DIAGNOSTIC, 16, -9.003868214188e-01, 2.221481831617e-03, 2.3915e-01, 1.8051e-03, - 2DIAGNOSTIC, 17, -9.001172034648e-01, 1.507448795696e-03, 2.4095e-01, 1.7920e-03, - 2DIAGNOSTIC, 18, -9.019890864617e-01, 1.130297775668e-03, 2.4251e-01, 1.5671e-03, - 2DIAGNOSTIC, 19, -9.050935703171e-01, 8.670433865106e-04, 2.4468e-01, 2.1710e-03, - 2DIAGNOSTIC, 20, -9.059219369833e-01, 6.123541638038e-04, 2.4624e-01, 1.5600e-03, - 2DIAGNOSTIC, 21, -9.059243096723e-01, 4.962307528163e-04, 2.4802e-01, 1.7719e-03, - 2DIAGNOSTIC, 22, -9.062319246767e-01, 3.976968428438e-04, 2.4975e-01, 1.7331e-03, - 2DIAGNOSTIC, 23, -9.051075811997e-01, 3.204485763703e-04, 2.5122e-01, 1.4751e-03, - 2DIAGNOSTIC, 24, -9.055408554747e-01, 2.367482512517e-04, 2.5279e-01, 1.5619e-03, - 2DIAGNOSTIC, 25, -9.053676866268e-01, 1.633866501182e-04, 2.5452e-01, 1.7331e-03, - 2DIAGNOSTIC, 26, -9.049847550239e-01, 9.888251329793e-05, 2.5618e-01, 1.6608e-03, - 2DIAGNOSTIC, 27, -9.052358259221e-01, 3.006099932713e-05, 2.5777e-01, 1.5929e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.809847714050e-01, 1.797693134862e+308, 4.6952e-01, 2.1175e-01, - 2DIAGNOSTIC, 2, -7.819917168135e-01, 1.797693134862e+308, 4.7196e-01, 2.4381e-03, - 2DIAGNOSTIC, 3, -7.840962828528e-01, 1.797693134862e+308, 4.7402e-01, 2.0649e-03, - 2DIAGNOSTIC, 4, -7.864017374781e-01, 1.797693134862e+308, 4.7596e-01, 1.9341e-03, - 2DIAGNOSTIC, 5, -7.895838711976e-01, 1.797693134862e+308, 4.7796e-01, 2.0020e-03, - 2DIAGNOSTIC, 6, -7.956690747069e-01, 1.797693134862e+308, 4.8003e-01, 2.0649e-03, - 2DIAGNOSTIC, 7, -8.052262985121e-01, 1.797693134862e+308, 4.8239e-01, 2.3661e-03, - 2DIAGNOSTIC, 8, -8.068146616461e-01, 1.797693134862e+308, 4.8475e-01, 2.3620e-03, - 2DIAGNOSTIC, 9, -8.074605655044e-01, 1.797693134862e+308, 4.8709e-01, 2.3320e-03, - 2DIAGNOSTIC, 10, -8.079874121509e-01, 2.685567732731e-03, 4.9057e-01, 3.4888e-03, - 2DIAGNOSTIC, 11, -8.083751139967e-01, 2.329407698277e-03, 4.9312e-01, 2.5470e-03, - 2DIAGNOSTIC, 12, -8.093337350031e-01, 1.878459148917e-03, 4.9540e-01, 2.2800e-03, - 2DIAGNOSTIC, 13, -8.096876894686e-01, 1.395811368602e-03, 4.9795e-01, 2.5530e-03, - 2DIAGNOSTIC, 14, -8.100483388992e-01, 9.275814019433e-04, 5.0053e-01, 2.5790e-03, - 2DIAGNOSTIC, 15, -8.099475509102e-01, 5.103609688163e-04, 5.0310e-01, 2.5618e-03, - 2DIAGNOSTIC, 16, -8.098531197289e-01, 2.269378329405e-04, 5.0537e-01, 2.2779e-03, - 2DIAGNOSTIC, 17, -8.098052981034e-01, 1.542249575432e-04, 5.0826e-01, 2.8880e-03, - 2DIAGNOSTIC, 18, -8.098712303219e-01, 1.078526655443e-04, 5.1085e-01, 2.5930e-03, - 2DIAGNOSTIC, 19, -8.097280229048e-01, 6.585884314593e-05, 5.1344e-01, 2.5811e-03, - 2DIAGNOSTIC, 20, -8.095899917267e-01, 2.922827621603e-05, 5.1571e-01, 2.2762e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.794498779824e-01, 1.797693134862e+308, 7.5435e-01, 2.3864e-01, - 2DIAGNOSTIC, 2, -6.806223565207e-01, 1.797693134862e+308, 7.6799e-01, 1.3635e-02, - 2DIAGNOSTIC, 3, -6.820578648403e-01, 1.797693134862e+308, 7.8149e-01, 1.3503e-02, - 2DIAGNOSTIC, 4, -6.833657926486e-01, 1.797693134862e+308, 7.9499e-01, 1.3496e-02, - 2DIAGNOSTIC, 5, -6.850040973907e-01, 1.797693134862e+308, 8.0860e-01, 1.3619e-02, - 2DIAGNOSTIC, 6, -6.872378022419e-01, 1.797693134862e+308, 8.2412e-01, 1.5513e-02, - 2DIAGNOSTIC, 7, -6.900341679286e-01, 1.797693134862e+308, 8.5613e-01, 3.2015e-02, - 2DIAGNOSTIC, 8, -6.900743756260e-01, 1.797693134862e+308, 8.7036e-01, 1.4228e-02, - 2DIAGNOSTIC, 9, -6.901085016203e-01, 1.797693134862e+308, 8.8347e-01, 1.3108e-02, - 2DIAGNOSTIC, 10, -6.901504652003e-01, 1.167619065003e-03, 8.9703e-01, 1.3563e-02, - 2DIAGNOSTIC, 11, -6.901892701629e-01, 9.140793386391e-04, 9.1223e-01, 1.5199e-02, - 2DIAGNOSTIC, 12, -6.902650569675e-01, 6.625395693552e-04, 9.2554e-01, 1.3308e-02, - 2DIAGNOSTIC, 13, -6.902404989019e-01, 4.354501687182e-04, 9.3881e-01, 1.3271e-02, - 2DIAGNOSTIC, 14, -6.903384032142e-01, 2.439681053337e-04, 9.5416e-01, 1.5348e-02, - 2DIAGNOSTIC, 15, -6.903825508588e-01, 1.015567566356e-04, 9.6756e-01, 1.3402e-02, - 2DIAGNOSTIC, 16, -6.904480208986e-01, 2.522522216568e-05, 9.8105e-01, 1.3490e-02, - 2DIAGNOSTIC, 17, -6.905493030676e-01, 2.619021080166e-05, 9.9635e-01, 1.5298e-02, - 2DIAGNOSTIC, 18, -6.905893841082e-01, 2.661138428307e-05, 1.0118e+00, 1.5467e-02, - 2DIAGNOSTIC, 19, -6.906253126239e-01, 2.620817078752e-05, 1.0297e+00, 1.7910e-02, - 2DIAGNOSTIC, 20, -6.906239873632e-01, 2.438826438269e-05, 1.0479e+00, 1.8210e-02, - 2DIAGNOSTIC, 21, -6.906186301101e-01, 2.124960715705e-05, 1.0662e+00, 1.8286e-02, - 2DIAGNOSTIC, 22, -6.906068569611e-01, 1.777973608798e-05, 1.0829e+00, 1.6661e-02, - 2DIAGNOSTIC, 23, -6.905773143546e-01, 1.207537694408e-05, 1.0973e+00, 1.4415e-02, - 2DIAGNOSTIC, 24, -6.905721908665e-01, 7.459662837987e-06, 1.1117e+00, 1.4427e-02, - 2DIAGNOSTIC, 25, -6.906137139604e-01, 4.044793325796e-06, 1.1272e+00, 1.5500e-02, - 2DIAGNOSTIC, 26, -6.906499249238e-01, 2.192467208888e-06, 1.1487e+00, 2.1476e-02, - 2DIAGNOSTIC, 27, -6.906612251476e-01, 2.091667196523e-06, 1.1650e+00, 1.6275e-02, - 2DIAGNOSTIC, 28, -6.906387200828e-01, 2.174449419357e-06, 1.1814e+00, 1.6395e-02, - 2DIAGNOSTIC, 29, -6.906408157036e-01, 2.711631272023e-06, 1.1976e+00, 1.6222e-02, - 2DIAGNOSTIC, 30, -6.906204968286e-01, 2.743173860523e-06, 1.2130e+00, 1.5372e-02, - 2DIAGNOSTIC, 31, -6.905494681217e-01, 1.588329428849e-06, 1.2264e+00, 1.3396e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.740927949921e-01, 1.797693134862e+308, 1.6578e+00, 4.3145e-01, - 2DIAGNOSTIC, 2, -5.748744302925e-01, 1.797693134862e+308, 1.7558e+00, 9.7975e-02, - 2DIAGNOSTIC, 3, -5.757845805170e-01, 1.797693134862e+308, 1.8559e+00, 1.0015e-01, - 2DIAGNOSTIC, 4, -5.764704679908e-01, 1.797693134862e+308, 1.9532e+00, 9.7219e-02, - 2DIAGNOSTIC, 5, -5.771200606208e-01, 1.797693134862e+308, 2.0516e+00, 9.8484e-02, - 2DIAGNOSTIC, 6, -5.780650043437e-01, 1.797693134862e+308, 2.1646e+00, 1.1298e-01, - 2DIAGNOSTIC, 7, -5.802360783276e-01, 1.797693134862e+308, 2.3226e+00, 1.5799e-01, - 2DIAGNOSTIC, 8, -5.806474628290e-01, 1.797693134862e+308, 2.4242e+00, 1.0155e-01, - 2DIAGNOSTIC, 9, -5.809333135165e-01, 1.797693134862e+308, 2.5386e+00, 1.1442e-01, - 2DIAGNOSTIC, 10, -5.811206859490e-01, 8.711175835489e-04, 2.6649e+00, 1.2626e-01, - 2DIAGNOSTIC, 11, -5.812506119390e-01, 7.257211716904e-04, 2.8469e+00, 1.8209e-01, - 2DIAGNOSTIC, 12, -5.812787876676e-01, 5.711703129525e-04, 2.9425e+00, 9.5531e-02, - 2DIAGNOSTIC, 13, -5.813547225677e-01, 4.261061101536e-04, 3.0406e+00, 9.8145e-02, - 2DIAGNOSTIC, 14, -5.814580774866e-01, 2.918097231934e-04, 3.1387e+00, 9.8127e-02, - 2DIAGNOSTIC, 15, -5.815774843217e-01, 1.742108357725e-04, 3.2374e+00, 9.8689e-02, - 2DIAGNOSTIC, 16, -5.816853492910e-01, 8.614474983468e-05, 3.3344e+00, 9.6998e-02, - 2DIAGNOSTIC, 17, -5.817500706356e-01, 6.506092944697e-05, 3.4311e+00, 9.6628e-02, - 2DIAGNOSTIC, 18, -5.818248643559e-01, 5.362445857373e-05, 3.5245e+00, 9.3391e-02, - 2DIAGNOSTIC, 19, -5.819778757151e-01, 4.977686358189e-05, 3.6198e+00, 9.5385e-02, - 2DIAGNOSTIC, 20, -5.826275258483e-01, 6.217788677321e-05, 3.7132e+00, 9.3323e-02, - 2DIAGNOSTIC, 21, -5.831441640697e-01, 8.245586550779e-05, 3.8811e+00, 1.6798e-01, - 2DIAGNOSTIC, 22, -5.831808952732e-01, 9.465478394233e-05, 3.9914e+00, 1.1025e-01, - 2DIAGNOSTIC, 23, -5.832109887587e-01, 9.962342281131e-05, 4.0860e+00, 9.4623e-02, - 2DIAGNOSTIC, 24, -5.832393933295e-01, 9.769095472630e-05, 4.1845e+00, 9.8486e-02, - 2DIAGNOSTIC, 25, -5.833120504769e-01, 9.034571255843e-05, 4.2824e+00, 9.7929e-02, - 2DIAGNOSTIC, 26, -5.837099789076e-01, 8.450584097530e-05, 4.4119e+00, 1.2946e-01, - 2DIAGNOSTIC, 27, -5.846593222680e-01, 8.958929828665e-05, 4.5412e+00, 1.2932e-01, - 2DIAGNOSTIC, 28, -5.847542956129e-01, 8.876100582522e-05, 4.7004e+00, 1.5921e-01, - 2DIAGNOSTIC, 29, -5.847559483563e-01, 8.236867343558e-05, 4.7988e+00, 9.8381e-02, - 2DIAGNOSTIC, 30, -5.848136494847e-01, 8.025082536330e-05, 4.8984e+00, 9.9613e-02, - 2DIAGNOSTIC, 31, -5.848510511865e-01, 7.934319035702e-05, 5.0114e+00, 1.1295e-01, - 2DIAGNOSTIC, 32, -5.848661042173e-01, 7.159637642469e-05, 5.1240e+00, 1.1263e-01, - 2DIAGNOSTIC, 33, -5.848612645723e-01, 5.803546392807e-05, 5.2372e+00, 1.1319e-01, - 2DIAGNOSTIC, 34, -5.848673822657e-01, 4.062233048333e-05, 5.3349e+00, 9.7704e-02, - 2DIAGNOSTIC, 35, -5.848806843914e-01, 2.164630524545e-05, 5.4472e+00, 1.1233e-01, - 2DIAGNOSTIC, 36, -5.848909034616e-01, 6.926251258740e-06, 5.5749e+00, 1.2768e-01, - 2DIAGNOSTIC, 37, -5.848928761656e-01, 4.961375836315e-06, 5.7191e+00, 1.4421e-01, - 2DIAGNOSTIC, 38, -5.848893089074e-01, 3.904877324511e-06, 5.8257e+00, 1.0662e-01, - 2DIAGNOSTIC, 39, -5.848870298866e-01, 2.593014799799e-06, 5.9653e+00, 1.3962e-01, - 2DIAGNOSTIC, 40, -5.848856210790e-01, 1.850417964876e-06, 6.0789e+00, 1.1356e-01, - 2DIAGNOSTIC, 41, -5.848840245862e-01, 1.462318520568e-06, 6.1906e+00, 1.1169e-01, - 2DIAGNOSTIC, 42, -5.848806351493e-01, 1.167369461937e-06, 6.3052e+00, 1.1456e-01, - Elapsed time (stage 1): 6.4426e+00 - - -Total elapsed time: 1.1783e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:48:04 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Sun Mar 17 23:48:05 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5636137614f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 61.0027, -119.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x563613766fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f8ec8b02010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x563613762850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 61.0027, -119.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56361375ff30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f8ec5443010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x563613779b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 61.0027, -119.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x563613766550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f8ec1d84010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x56361377ed70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 61.0027, -119.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56361377cc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f8ebe6c5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x563613780f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 61.0027, -119.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56361377f3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f8ebb006010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x563613781540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 61.0027, -119.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5636137814d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f8eb7947010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.884072991055e-01, 1.797693134862e+308, 2.3478e-01, 2.3477e-01, - 2DIAGNOSTIC, 2, -5.920994404289e-01, 1.797693134862e+308, 2.3728e-01, 2.5010e-03, - 2DIAGNOSTIC, 3, -5.981833624861e-01, 1.797693134862e+308, 2.3949e-01, 2.2149e-03, - 2DIAGNOSTIC, 4, -6.073828113237e-01, 1.797693134862e+308, 2.4211e-01, 2.6169e-03, - 2DIAGNOSTIC, 5, -6.210812163253e-01, 1.797693134862e+308, 2.4481e-01, 2.7001e-03, - 2DIAGNOSTIC, 6, -6.366497188258e-01, 1.797693134862e+308, 2.4743e-01, 2.6181e-03, - 2DIAGNOSTIC, 7, -6.434380444677e-01, 1.797693134862e+308, 2.4982e-01, 2.3980e-03, - 2DIAGNOSTIC, 8, -6.461167366257e-01, 1.797693134862e+308, 2.5303e-01, 3.2079e-03, - 2DIAGNOSTIC, 9, -6.462339020703e-01, 1.797693134862e+308, 2.5535e-01, 2.3198e-03, - 2DIAGNOSTIC, 10, -6.466098335638e-01, 7.240794464180e-03, 2.5761e-01, 2.2540e-03, - 2DIAGNOSTIC, 11, -6.468206617378e-01, 5.672810581980e-03, 2.6006e-01, 2.4581e-03, - 2DIAGNOSTIC, 12, -6.468282266597e-01, 4.006638637972e-03, 2.6221e-01, 2.1470e-03, - 2DIAGNOSTIC, 13, -6.468950850738e-01, 2.461032437893e-03, 2.6433e-01, 2.1150e-03, - 2DIAGNOSTIC, 14, -6.471723091088e-01, 1.221607757820e-03, 2.6651e-01, 2.1791e-03, - 2DIAGNOSTIC, 15, -6.475567943010e-01, 4.535903313475e-04, 2.6871e-01, 2.2061e-03, - 2DIAGNOSTIC, 16, -6.480374419576e-01, 1.890078477826e-04, 2.7087e-01, 2.1570e-03, - 2DIAGNOSTIC, 17, -6.493417738704e-01, 1.509180259703e-04, 2.7356e-01, 2.6929e-03, - 2DIAGNOSTIC, 18, -6.500278914227e-01, 1.866654157566e-04, 2.7625e-01, 2.6901e-03, - 2DIAGNOSTIC, 19, -6.497449742384e-01, 1.973012078086e-04, 2.8321e-01, 6.9571e-03, - 2DIAGNOSTIC, 20, -6.497449482578e-01, 1.976264136263e-04, 2.8539e-01, 2.1818e-03, - 2DIAGNOSTIC, 21, -6.497449936517e-01, 1.841336973131e-04, 2.8752e-01, 2.1279e-03, - 2DIAGNOSTIC, 22, -6.497450703972e-01, 1.545435569064e-04, 2.8967e-01, 2.1570e-03, - 2DIAGNOSTIC, 23, -6.497452001107e-01, 1.143558877870e-04, 2.9180e-01, 2.1260e-03, - 2DIAGNOSTIC, 24, -6.497454192772e-01, 7.249078280953e-05, 2.9399e-01, 2.1880e-03, - 2DIAGNOSTIC, 25, -6.497457895652e-01, 3.446718894141e-05, 2.9615e-01, 2.1570e-03, - 2DIAGNOSTIC, 26, -6.497464145476e-01, 3.959991805066e-06, 2.9834e-01, 2.1901e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.530012392191e-01, 1.797693134862e+308, 5.3653e-01, 2.3820e-01, - 2DIAGNOSTIC, 2, -5.538513183629e-01, 1.797693134862e+308, 5.5026e-01, 1.3731e-02, - 2DIAGNOSTIC, 3, -5.544151323462e-01, 1.797693134862e+308, 5.6741e-01, 1.7147e-02, - 2DIAGNOSTIC, 4, -5.545665835266e-01, 1.797693134862e+308, 5.8611e-01, 1.8701e-02, - 2DIAGNOSTIC, 5, -5.545852057104e-01, 1.797693134862e+308, 6.0116e-01, 1.5043e-02, - 2DIAGNOSTIC, 6, -5.545722807806e-01, 1.797693134862e+308, 6.1563e-01, 1.4476e-02, - 2DIAGNOSTIC, 7, -5.545759714348e-01, 1.797693134862e+308, 6.3003e-01, 1.4403e-02, - 2DIAGNOSTIC, 8, -5.545725912826e-01, 1.797693134862e+308, 6.4506e-01, 1.5025e-02, - 2DIAGNOSTIC, 9, -5.545770159278e-01, 1.797693134862e+308, 6.5854e-01, 1.3482e-02, - 2DIAGNOSTIC, 10, -5.546253572858e-01, 1.247370001816e-04, 6.7450e-01, 1.5959e-02, - 2DIAGNOSTIC, 11, -5.546176973019e-01, 4.726614322931e-05, 6.9033e-01, 1.5833e-02, - 2DIAGNOSTIC, 12, -5.545977285386e-01, 1.363546338314e-05, 7.0406e-01, 1.3726e-02, - 2DIAGNOSTIC, 13, -5.546103803814e-01, 6.801772144113e-06, 7.1848e-01, 1.4416e-02, - 2DIAGNOSTIC, 14, -5.546236519860e-01, 6.522167991893e-06, 7.3445e-01, 1.5977e-02, - 2DIAGNOSTIC, 15, -5.546430178367e-01, 7.156099565128e-06, 7.5012e-01, 1.5667e-02, - 2DIAGNOSTIC, 16, -5.546457805561e-01, 6.915826068515e-06, 7.6957e-01, 1.9452e-02, - 2DIAGNOSTIC, 17, -5.546423485172e-01, 6.307121126585e-06, 7.8603e-01, 1.6461e-02, - 2DIAGNOSTIC, 18, -5.546406567228e-01, 5.228706338005e-06, 7.9991e-01, 1.3874e-02, - 2DIAGNOSTIC, 19, -5.546197830110e-01, 3.442839696589e-06, 8.1585e-01, 1.5946e-02, - 2DIAGNOSTIC, 20, -5.546478197447e-01, 3.636897095691e-06, 8.2964e-01, 1.3789e-02, - 2DIAGNOSTIC, 21, -5.546663875283e-01, 3.882092912022e-06, 8.4357e-01, 1.3924e-02, - 2DIAGNOSTIC, 22, -5.546795721859e-01, 3.717385069393e-06, 8.5985e-01, 1.6288e-02, - 2DIAGNOSTIC, 23, -5.546914768912e-01, 3.908907048898e-06, 8.7781e-01, 1.7960e-02, - 2DIAGNOSTIC, 24, -5.546833605819e-01, 3.953473409597e-06, 8.9358e-01, 1.5771e-02, - 2DIAGNOSTIC, 25, -5.546852942340e-01, 4.183944262756e-06, 9.0776e-01, 1.4177e-02, - 2DIAGNOSTIC, 26, -5.546835021456e-01, 4.128419790486e-06, 9.2354e-01, 1.5776e-02, - 2DIAGNOSTIC, 27, -5.547031663102e-01, 4.108850830742e-06, 9.3914e-01, 1.5603e-02, - 2DIAGNOSTIC, 28, -5.546687892923e-01, 3.162667615041e-06, 9.5319e-01, 1.4045e-02, - 2DIAGNOSTIC, 29, -5.546643607635e-01, 1.659315083752e-06, 9.6712e-01, 1.3936e-02, - 2DIAGNOSTIC, 30, -5.546862492895e-01, 1.053521221615e-06, 9.8284e-01, 1.5719e-02, - 2DIAGNOSTIC, 31, -5.547313329806e-01, 1.512357904153e-06, 9.9865e-01, 1.5807e-02, - 2DIAGNOSTIC, 32, -5.547289330235e-01, 2.041944214576e-06, 1.0144e+00, 1.5773e-02, - 2DIAGNOSTIC, 33, -5.546829617091e-01, 1.937712609507e-06, 1.0285e+00, 1.4075e-02, - 2DIAGNOSTIC, 34, -5.547028629172e-01, 1.960770412448e-06, 1.0443e+00, 1.5832e-02, - 2DIAGNOSTIC, 35, -5.546956142036e-01, 1.778651870777e-06, 1.0599e+00, 1.5613e-02, - 2DIAGNOSTIC, 36, -5.547217800730e-01, 1.839788604071e-06, 1.0756e+00, 1.5673e-02, - 2DIAGNOSTIC, 37, -5.547276258871e-01, 2.171361947568e-06, 1.0919e+00, 1.6320e-02, - 2DIAGNOSTIC, 38, -5.547512294128e-01, 2.240426387561e-06, 1.1122e+00, 2.0307e-02, - 2DIAGNOSTIC, 39, -5.547432326129e-01, 2.003216899488e-06, 1.1274e+00, 1.5200e-02, - 2DIAGNOSTIC, 40, -5.547413009285e-01, 1.900909272327e-06, 1.1424e+00, 1.4989e-02, - 2DIAGNOSTIC, 41, -5.547422231660e-01, 2.269970120691e-06, 1.1561e+00, 1.3665e-02, - 2DIAGNOSTIC, 42, -5.547301419184e-01, 2.314008624944e-06, 1.1697e+00, 1.3652e-02, - 2DIAGNOSTIC, 43, -5.547327153996e-01, 1.686564798112e-06, 1.1857e+00, 1.5913e-02, - 2DIAGNOSTIC, 44, -5.547347794257e-01, 1.258432063174e-06, 1.2009e+00, 1.5241e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.598987234389e-01, 1.797693134862e+308, 1.5632e+00, 3.6228e-01, - 2DIAGNOSTIC, 2, -4.602368303066e-01, 1.797693134862e+308, 1.6569e+00, 9.3762e-02, - 2DIAGNOSTIC, 3, -4.603324277160e-01, 1.797693134862e+308, 1.7510e+00, 9.4081e-02, - 2DIAGNOSTIC, 4, -4.603848984859e-01, 1.797693134862e+308, 1.8447e+00, 9.3682e-02, - 2DIAGNOSTIC, 5, -4.604306554345e-01, 1.797693134862e+308, 1.9383e+00, 9.3642e-02, - 2DIAGNOSTIC, 6, -4.610828489576e-01, 1.797693134862e+308, 2.0861e+00, 1.4774e-01, - 2DIAGNOSTIC, 7, -4.612281718821e-01, 1.797693134862e+308, 2.2296e+00, 1.4350e-01, - 2DIAGNOSTIC, 8, -4.612262395472e-01, 1.797693134862e+308, 2.3358e+00, 1.0625e-01, - 2DIAGNOSTIC, 9, -4.612253189607e-01, 1.797693134862e+308, 2.4822e+00, 1.4639e-01, - 2DIAGNOSTIC, 10, -4.612254590318e-01, 2.079398098966e-04, 2.6019e+00, 1.1970e-01, - 2DIAGNOSTIC, 11, -4.612247817500e-01, 1.572965580847e-04, 2.7084e+00, 1.0647e-01, - 2DIAGNOSTIC, 12, -4.612225057295e-01, 1.181976316854e-04, 2.8002e+00, 9.1775e-02, - 2DIAGNOSTIC, 13, -4.612218902295e-01, 7.963098776438e-05, 2.9088e+00, 1.0860e-01, - 2DIAGNOSTIC, 14, -4.612227728406e-01, 4.231140588797e-05, 3.0040e+00, 9.5242e-02, - 2DIAGNOSTIC, 15, -4.612215481777e-01, 7.446109655168e-06, 3.1109e+00, 1.0687e-01, - 2DIAGNOSTIC, 16, -4.612203212782e-01, 1.381374351433e-06, 3.2169e+00, 1.0601e-01, - 2DIAGNOSTIC, 17, -4.612189209920e-01, 1.311252656774e-06, 3.3376e+00, 1.2072e-01, - 2DIAGNOSTIC, 18, -4.612167299216e-01, 1.160818615793e-06, 3.4503e+00, 1.1271e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.965903147827e-01, 1.797693134862e+308, 4.6919e+00, 1.2416e+00, - 2DIAGNOSTIC, 2, -3.967574062270e-01, 1.797693134862e+308, 5.2711e+00, 5.7920e-01, - 2DIAGNOSTIC, 3, -3.968430100656e-01, 1.797693134862e+308, 5.9214e+00, 6.5028e-01, - 2DIAGNOSTIC, 4, -3.968874720636e-01, 1.797693134862e+308, 7.0290e+00, 1.1076e+00, - 2DIAGNOSTIC, 5, -3.968859859222e-01, 1.797693134862e+308, 7.9356e+00, 9.0652e-01, - 2DIAGNOSTIC, 6, -3.968862791381e-01, 1.797693134862e+308, 8.5275e+00, 5.9192e-01, - 2DIAGNOSTIC, 7, -3.968862936155e-01, 1.797693134862e+308, 9.0843e+00, 5.5684e-01, - 2DIAGNOSTIC, 8, -3.968860208401e-01, 1.797693134862e+308, 9.6378e+00, 5.5346e-01, - 2DIAGNOSTIC, 9, -3.968860809634e-01, 1.797693134862e+308, 1.0225e+01, 5.8728e-01, - 2DIAGNOSTIC, 10, -3.968856290926e-01, 3.450855790620e-05, 1.0849e+01, 6.2379e-01, - 2DIAGNOSTIC, 11, -3.968859267771e-01, 1.362112064411e-05, 1.1628e+01, 7.7887e-01, - 2DIAGNOSTIC, 12, -3.968859273673e-01, 5.108705197460e-06, 1.2360e+01, 7.3229e-01, - 2DIAGNOSTIC, 13, -3.968857189494e-01, 2.317572627419e-06, 1.3020e+01, 6.6020e-01, - 2DIAGNOSTIC, 14, -3.968856262639e-01, 2.209673732462e-06, 1.3577e+01, 5.5646e-01, - 2DIAGNOSTIC, 15, -3.968855687666e-01, 2.047884242462e-06, 1.4164e+01, 5.8783e-01, - 2DIAGNOSTIC, 16, -3.968853841683e-01, 1.917471794677e-06, 1.4776e+01, 6.1112e-01, - 2DIAGNOSTIC, 17, -3.968853067788e-01, 1.806434829214e-06, 1.5330e+01, 5.5424e-01, - 2DIAGNOSTIC, 18, -3.968854182968e-01, 1.707336035342e-06, 1.6023e+01, 6.9310e-01, - 2DIAGNOSTIC, 19, -3.968854627960e-01, 1.628624253854e-06, 1.6643e+01, 6.1967e-01, - 2DIAGNOSTIC, 20, -3.968853723646e-01, 1.542213380300e-06, 1.7291e+01, 6.4838e-01, - 2DIAGNOSTIC, 21, -3.968851384887e-01, 1.470869470263e-06, 1.7930e+01, 6.3887e-01, - 2DIAGNOSTIC, 22, -3.968850418302e-01, 1.407375173054e-06, 1.8479e+01, 5.4916e-01, - 2DIAGNOSTIC, 23, -3.968849775204e-01, 1.344387923846e-06, 1.9019e+01, 5.4025e-01, - 2DIAGNOSTIC, 24, -3.968851109870e-01, 1.291322963240e-06, 1.9634e+01, 6.1422e-01, - 2DIAGNOSTIC, 25, -3.968851265900e-01, 1.244574898612e-06, 2.0265e+01, 6.3138e-01, - 2DIAGNOSTIC, 26, -3.968850289478e-01, 1.196520699610e-06, 2.0900e+01, 6.3558e-01, - 2DIAGNOSTIC, 27, -3.968850075590e-01, 1.152048689460e-06, 2.1511e+01, 6.1095e-01, - 2DIAGNOSTIC, 28, -3.968848947388e-01, 1.113044506722e-06, 2.2079e+01, 5.6755e-01, - 2DIAGNOSTIC, 29, -3.968853318101e-01, 1.090739055569e-06, 2.2736e+01, 6.5656e-01, - 2DIAGNOSTIC, 30, -3.968853782298e-01, 1.069214750703e-06, 2.3376e+01, 6.4038e-01, - 2DIAGNOSTIC, 31, -3.968851155882e-01, 1.036955730636e-06, 2.4016e+01, 6.4039e-01, - 2DIAGNOSTIC, 32, -3.968850283462e-01, 1.002023791913e-06, 2.4683e+01, 6.6690e-01, - Elapsed time (stage 0): 2.5053e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.284591350135e-01, 1.797693134862e+308, 2.0340e-01, 2.0340e-01, - 2DIAGNOSTIC, 2, -6.303795620054e-01, 1.797693134862e+308, 2.0560e-01, 2.2051e-03, - 2DIAGNOSTIC, 3, -6.326893948567e-01, 1.797693134862e+308, 2.0781e-01, 2.2070e-03, - 2DIAGNOSTIC, 4, -6.352274666239e-01, 1.797693134862e+308, 2.0998e-01, 2.1708e-03, - 2DIAGNOSTIC, 5, -6.373873054186e-01, 1.797693134862e+308, 2.1221e-01, 2.2361e-03, - 2DIAGNOSTIC, 6, -6.392785988291e-01, 1.797693134862e+308, 2.1461e-01, 2.3901e-03, - 2DIAGNOSTIC, 7, -6.411480893694e-01, 1.797693134862e+308, 2.1728e-01, 2.6760e-03, - 2DIAGNOSTIC, 8, -6.421834797224e-01, 1.797693134862e+308, 2.2052e-01, 3.2392e-03, - 2DIAGNOSTIC, 9, -6.424092623199e-01, 1.797693134862e+308, 2.2287e-01, 2.3491e-03, - 2DIAGNOSTIC, 10, -6.432542248351e-01, 1.566272209814e-03, 2.2585e-01, 2.9821e-03, - 2DIAGNOSTIC, 11, -6.434275431773e-01, 1.212835354382e-03, 2.2855e-01, 2.7020e-03, - 2DIAGNOSTIC, 12, -6.436100899174e-01, 8.871232042015e-04, 2.3126e-01, 2.7089e-03, - 2DIAGNOSTIC, 13, -6.437940267957e-01, 6.163985008830e-04, 2.3397e-01, 2.7089e-03, - 2DIAGNOSTIC, 14, -6.445671004395e-01, 4.334184006951e-04, 2.3732e-01, 3.3531e-03, - 2DIAGNOSTIC, 15, -6.450990804279e-01, 3.140224114524e-04, 2.4011e-01, 2.7819e-03, - 2DIAGNOSTIC, 16, -6.450700472806e-01, 2.314768086974e-04, 2.4320e-01, 3.0951e-03, - 2DIAGNOSTIC, 17, -6.455700331399e-01, 1.995281885200e-04, 2.4603e-01, 2.8238e-03, - 2DIAGNOSTIC, 18, -6.457881363852e-01, 1.836530550576e-04, 2.4860e-01, 2.5699e-03, - 2DIAGNOSTIC, 19, -6.458038040699e-01, 1.574210654630e-04, 2.5103e-01, 2.4309e-03, - 2DIAGNOSTIC, 20, -6.458698839022e-01, 1.395339335618e-04, 2.5327e-01, 2.2409e-03, - 2DIAGNOSTIC, 21, -6.460633499294e-01, 1.184265635418e-04, 2.5551e-01, 2.2469e-03, - 2DIAGNOSTIC, 22, -6.461342972571e-01, 9.342661055176e-05, 2.5777e-01, 2.2550e-03, - 2DIAGNOSTIC, 23, -6.466637521578e-01, 7.535323100139e-05, 2.6059e-01, 2.8219e-03, - 2DIAGNOSTIC, 24, -6.467185135998e-01, 6.676992934766e-05, 2.6337e-01, 2.7840e-03, - 2DIAGNOSTIC, 25, -6.467274642974e-01, 6.256860145892e-05, 2.6561e-01, 2.2380e-03, - 2DIAGNOSTIC, 26, -6.467513290759e-01, 5.273643785304e-05, 2.6817e-01, 2.5580e-03, - 2DIAGNOSTIC, 27, -6.467689050383e-01, 4.712626733035e-05, 2.7039e-01, 2.2149e-03, - 2DIAGNOSTIC, 28, -6.468166248512e-01, 4.169155482670e-05, 2.7288e-01, 2.4931e-03, - 2DIAGNOSTIC, 29, -6.469752275045e-01, 3.542980763213e-05, 2.7636e-01, 3.4821e-03, - 2DIAGNOSTIC, 30, -6.469036878029e-01, 2.626022939885e-05, 2.7880e-01, 2.4350e-03, - 2DIAGNOSTIC, 31, -6.469183994005e-01, 1.840455552581e-05, 2.8114e-01, 2.3429e-03, - 2DIAGNOSTIC, 32, -6.469438673397e-01, 1.053986109242e-05, 2.8378e-01, 2.6381e-03, - 2DIAGNOSTIC, 33, -6.471060977149e-01, 1.145306682044e-05, 2.8598e-01, 2.2068e-03, - 2DIAGNOSTIC, 34, -6.471208061980e-01, 1.213704937643e-05, 2.8862e-01, 2.6319e-03, - 2DIAGNOSTIC, 35, -6.472837763703e-01, 1.392273067909e-05, 2.9204e-01, 3.4230e-03, - 2DIAGNOSTIC, 36, -6.474204868269e-01, 1.635034780748e-05, 2.9433e-01, 2.2910e-03, - 2DIAGNOSTIC, 37, -6.474277637858e-01, 1.743037818843e-05, 2.9646e-01, 2.1341e-03, - 2DIAGNOSTIC, 38, -6.474329252107e-01, 1.744400260709e-05, 2.9857e-01, 2.1021e-03, - 2DIAGNOSTIC, 39, -6.473052692973e-01, 1.626302910056e-05, 3.0094e-01, 2.3780e-03, - 2DIAGNOSTIC, 40, -6.473091845199e-01, 1.295627558196e-05, 3.0304e-01, 2.0928e-03, - 2DIAGNOSTIC, 41, -6.471762068305e-01, 7.346123279881e-06, 3.0512e-01, 2.0819e-03, - 2DIAGNOSTIC, 42, -6.471780598766e-01, 1.657058992983e-06, 3.0774e-01, 2.6212e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.478255209177e-01, 1.797693134862e+308, 5.2325e-01, 2.1551e-01, - 2DIAGNOSTIC, 2, -5.487433511889e-01, 1.797693134862e+308, 5.3787e-01, 1.4622e-02, - 2DIAGNOSTIC, 3, -5.497028727410e-01, 1.797693134862e+308, 5.5288e-01, 1.5011e-02, - 2DIAGNOSTIC, 4, -5.508289349912e-01, 1.797693134862e+308, 5.6777e-01, 1.4888e-02, - 2DIAGNOSTIC, 5, -5.519056209639e-01, 1.797693134862e+308, 5.8275e-01, 1.4977e-02, - 2DIAGNOSTIC, 6, -5.532280095612e-01, 1.797693134862e+308, 5.9931e-01, 1.6567e-02, - 2DIAGNOSTIC, 7, -5.540581118020e-01, 1.797693134862e+308, 6.2127e-01, 2.1960e-02, - 2DIAGNOSTIC, 8, -5.545457799632e-01, 1.797693134862e+308, 6.3610e-01, 1.4829e-02, - 2DIAGNOSTIC, 9, -5.547305093564e-01, 1.797693134862e+308, 6.5091e-01, 1.4812e-02, - 2DIAGNOSTIC, 10, -5.551622106611e-01, 9.140493857422e-04, 6.7359e-01, 2.2674e-02, - 2DIAGNOSTIC, 11, -5.552478903635e-01, 7.224441670555e-04, 6.9075e-01, 1.7159e-02, - 2DIAGNOSTIC, 12, -5.553444130912e-01, 5.414141286428e-04, 7.0568e-01, 1.4935e-02, - 2DIAGNOSTIC, 13, -5.555223874498e-01, 3.845337180853e-04, 7.2068e-01, 1.4998e-02, - 2DIAGNOSTIC, 14, -5.556310157614e-01, 2.604089761019e-04, 7.3549e-01, 1.4806e-02, - 2DIAGNOSTIC, 15, -5.558194032795e-01, 1.717262255492e-04, 7.5232e-01, 1.6835e-02, - 2DIAGNOSTIC, 16, -5.560889634252e-01, 1.290992716230e-04, 7.8225e-01, 2.9931e-02, - 2DIAGNOSTIC, 17, -5.560852984621e-01, 1.044395755024e-04, 7.9699e-01, 1.4734e-02, - 2DIAGNOSTIC, 18, -5.560903412881e-01, 8.722247239467e-05, 8.1145e-01, 1.4468e-02, - 2DIAGNOSTIC, 19, -5.560856847856e-01, 6.853527761267e-05, 8.2605e-01, 1.4595e-02, - 2DIAGNOSTIC, 20, -5.560999666650e-01, 5.688064862145e-05, 8.4059e-01, 1.4538e-02, - 2DIAGNOSTIC, 21, -5.561221073367e-01, 4.371536939966e-05, 8.5811e-01, 1.7519e-02, - 2DIAGNOSTIC, 22, -5.561451679168e-01, 3.054799184947e-05, 8.7741e-01, 1.9309e-02, - 2DIAGNOSTIC, 23, -5.561261564204e-01, 1.942635630456e-05, 8.9427e-01, 1.6854e-02, - 2DIAGNOSTIC, 24, -5.561331098860e-01, 9.991274205028e-06, 9.0890e-01, 1.4630e-02, - 2DIAGNOSTIC, 25, -5.561304862679e-01, 4.144451474966e-06, 9.2386e-01, 1.4960e-02, - 2DIAGNOSTIC, 26, -5.561471993187e-01, 4.111721785272e-06, 9.3879e-01, 1.4935e-02, - 2DIAGNOSTIC, 27, -5.561581608279e-01, 3.933740554955e-06, 9.5580e-01, 1.7005e-02, - 2DIAGNOSTIC, 28, -5.561682601355e-01, 3.799263610160e-06, 9.7289e-01, 1.7096e-02, - 2DIAGNOSTIC, 29, -5.561707465060e-01, 3.390086796486e-06, 9.8874e-01, 1.5846e-02, - 2DIAGNOSTIC, 30, -5.561774345380e-01, 3.141647676820e-06, 1.0040e+00, 1.5247e-02, - 2DIAGNOSTIC, 31, -5.562016866099e-01, 3.461306865571e-06, 1.0209e+00, 1.6903e-02, - 2DIAGNOSTIC, 32, -5.562124609732e-01, 4.067774382006e-06, 1.0356e+00, 1.4751e-02, - 2DIAGNOSTIC, 33, -5.561999314476e-01, 3.855168802511e-06, 1.0544e+00, 1.8722e-02, - 2DIAGNOSTIC, 34, -5.562048152131e-01, 3.577776935597e-06, 1.0709e+00, 1.6523e-02, - 2DIAGNOSTIC, 35, -5.561843624281e-01, 2.720283901712e-06, 1.0858e+00, 1.4867e-02, - 2DIAGNOSTIC, 36, -5.561928825307e-01, 2.094798900266e-06, 1.1008e+00, 1.4998e-02, - 2DIAGNOSTIC, 37, -5.562049504639e-01, 1.695986546681e-06, 1.1158e+00, 1.5090e-02, - 2DIAGNOSTIC, 38, -5.562214548763e-01, 1.597006443959e-06, 1.1306e+00, 1.4784e-02, - 2DIAGNOSTIC, 39, -5.562474091607e-01, 1.805985673998e-06, 1.1489e+00, 1.8312e-02, - 2DIAGNOSTIC, 40, -5.562514840179e-01, 2.037463242642e-06, 1.1714e+00, 2.2465e-02, - 2DIAGNOSTIC, 41, -5.562535867810e-01, 2.468023217902e-06, 1.1868e+00, 1.5397e-02, - 2DIAGNOSTIC, 42, -5.562544919258e-01, 2.861419827454e-06, 1.2014e+00, 1.4561e-02, - 2DIAGNOSTIC, 43, -5.562571389698e-01, 2.910772046425e-06, 1.2161e+00, 1.4773e-02, - 2DIAGNOSTIC, 44, -5.562646324735e-01, 2.898462697794e-06, 1.2322e+00, 1.6105e-02, - 2DIAGNOSTIC, 45, -5.562649288965e-01, 2.447529709598e-06, 1.2509e+00, 1.8691e-02, - 2DIAGNOSTIC, 46, -5.562653552318e-01, 1.953234442038e-06, 1.2714e+00, 2.0428e-02, - 2DIAGNOSTIC, 47, -5.562657624075e-01, 1.495069903996e-06, 1.2863e+00, 1.4922e-02, - 2DIAGNOSTIC, 48, -5.562688770191e-01, 1.179110135238e-06, 1.3011e+00, 1.4790e-02, - 2DIAGNOSTIC, 49, -5.562727307577e-01, 1.135021525860e-06, 1.3158e+00, 1.4748e-02, - 2DIAGNOSTIC, 50, -5.562727757761e-01, 1.087316389484e-06, 1.3307e+00, 1.4911e-02, - 2DIAGNOSTIC, 51, -5.562730831649e-01, 1.024668672245e-06, 1.3478e+00, 1.7044e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.612448949312e-01, 1.797693134862e+308, 1.7371e+00, 3.8936e-01, - 2DIAGNOSTIC, 2, -4.619625122940e-01, 1.797693134862e+308, 1.8389e+00, 1.0182e-01, - 2DIAGNOSTIC, 3, -4.625111438909e-01, 1.797693134862e+308, 1.9437e+00, 1.0475e-01, - 2DIAGNOSTIC, 4, -4.627596439587e-01, 1.797693134862e+308, 2.0492e+00, 1.0555e-01, - 2DIAGNOSTIC, 5, -4.629284710798e-01, 1.797693134862e+308, 2.1594e+00, 1.1020e-01, - 2DIAGNOSTIC, 6, -4.632753309883e-01, 1.797693134862e+308, 2.3023e+00, 1.4281e-01, - 2DIAGNOSTIC, 7, -4.632977100718e-01, 1.797693134862e+308, 2.4186e+00, 1.1633e-01, - 2DIAGNOSTIC, 8, -4.633016612302e-01, 1.797693134862e+308, 2.5333e+00, 1.1475e-01, - 2DIAGNOSTIC, 9, -4.633053869792e-01, 1.797693134862e+308, 2.6613e+00, 1.2797e-01, - 2DIAGNOSTIC, 10, -4.633079034083e-01, 2.549530337727e-04, 2.7660e+00, 1.0472e-01, - 2DIAGNOSTIC, 11, -4.633097612793e-01, 1.482796857255e-04, 2.8666e+00, 1.0060e-01, - 2DIAGNOSTIC, 12, -4.633118869475e-01, 8.259882993863e-05, 2.9956e+00, 1.2899e-01, - 2DIAGNOSTIC, 13, -4.633120259356e-01, 4.575012582043e-05, 3.1787e+00, 1.8305e-01, - 2DIAGNOSTIC, 14, -4.633120269921e-01, 2.111983621143e-05, 3.5278e+00, 3.4919e-01, - 2DIAGNOSTIC, 15, -4.633120269920e-01, 4.570525274861e-06, 3.6967e+00, 1.6886e-01, - 2DIAGNOSTIC, 16, -4.633120269920e-01, 3.152413149660e-06, 3.8119e+00, 1.1520e-01, - 2DIAGNOSTIC, 17, -4.633120269920e-01, 2.599712033535e-06, 3.9302e+00, 1.1828e-01, - 2DIAGNOSTIC, 18, -4.633120269920e-01, 2.174084456269e-06, 4.0618e+00, 1.3161e-01, - 2DIAGNOSTIC, 19, -4.633120269920e-01, 1.875542701646e-06, 4.1924e+00, 1.3061e-01, - 2DIAGNOSTIC, 20, -4.633120269920e-01, 1.664703236905e-06, 4.3118e+00, 1.1944e-01, - 2DIAGNOSTIC, 21, -4.633120269920e-01, 1.519692624262e-06, 4.4313e+00, 1.1947e-01, - 2DIAGNOSTIC, 22, -4.633120269920e-01, 1.446677060077e-06, 4.5504e+00, 1.1904e-01, - 2DIAGNOSTIC, 23, -4.633120269920e-01, 1.383718991929e-06, 4.6701e+00, 1.1978e-01, - 2DIAGNOSTIC, 24, -4.633120269920e-01, 1.326036913954e-06, 4.7857e+00, 1.1557e-01, - 2DIAGNOSTIC, 25, -4.633120269920e-01, 1.272971485826e-06, 4.8883e+00, 1.0263e-01, - 2DIAGNOSTIC, 26, -4.633120269920e-01, 1.223989785949e-06, 5.0070e+00, 1.1862e-01, - 2DIAGNOSTIC, 27, -4.633120269920e-01, 1.178637877158e-06, 5.1233e+00, 1.1633e-01, - 2DIAGNOSTIC, 28, -4.633120269920e-01, 1.136526696477e-06, 5.2376e+00, 1.1429e-01, - 2DIAGNOSTIC, 29, -4.633120269920e-01, 1.097320865603e-06, 5.3815e+00, 1.4396e-01, - 2DIAGNOSTIC, 30, -4.633120269920e-01, 1.060729740286e-06, 5.5142e+00, 1.3262e-01, - 2DIAGNOSTIC, 31, -4.633120269920e-01, 1.026500192340e-06, 5.6351e+00, 1.2095e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.962111721376e-01, 1.797693134862e+308, 7.1250e+00, 1.4899e+00, - 2DIAGNOSTIC, 2, -3.962881472342e-01, 1.797693134862e+308, 7.7423e+00, 6.1729e-01, - 2DIAGNOSTIC, 3, -3.963722787414e-01, 1.797693134862e+308, 8.3556e+00, 6.1327e-01, - 2DIAGNOSTIC, 4, -3.964924170864e-01, 1.797693134862e+308, 9.1435e+00, 7.8796e-01, - 2DIAGNOSTIC, 5, -3.965134809555e-01, 1.797693134862e+308, 9.8361e+00, 6.9259e-01, - 2DIAGNOSTIC, 6, -3.965316715810e-01, 1.797693134862e+308, 1.0523e+01, 6.8725e-01, - 2DIAGNOSTIC, 7, -3.965757119177e-01, 1.797693134862e+308, 1.1139e+01, 6.1528e-01, - 2DIAGNOSTIC, 8, -3.965852497563e-01, 1.797693134862e+308, 1.1841e+01, 7.0259e-01, - 2DIAGNOSTIC, 9, -3.965972969832e-01, 1.797693134862e+308, 1.2534e+01, 6.9255e-01, - 2DIAGNOSTIC, 10, -3.966107332348e-01, 6.490526261539e-05, 1.3139e+01, 6.0542e-01, - 2DIAGNOSTIC, 11, -3.975998114363e-01, 1.093698586227e-04, 1.4002e+01, 8.6258e-01, - 2DIAGNOSTIC, 12, -3.984483980378e-01, 1.903339291904e-04, 1.4814e+01, 8.1257e-01, - 2DIAGNOSTIC, 13, -3.984522612112e-01, 2.458511626038e-04, 1.5962e+01, 1.1472e+00, - 2DIAGNOSTIC, 14, -3.984536347797e-01, 2.788642869392e-04, 1.7062e+01, 1.1000e+00, - 2DIAGNOSTIC, 15, -3.984535166266e-01, 2.836929162446e-04, 1.7771e+01, 7.0919e-01, - 2DIAGNOSTIC, 16, -3.984534312111e-01, 2.619812081656e-04, 1.8493e+01, 7.2198e-01, - 2DIAGNOSTIC, 17, -3.984534665925e-01, 2.200018058529e-04, 1.9196e+01, 7.0342e-01, - 2DIAGNOSTIC, 18, -3.984533569817e-01, 1.634317893141e-04, 1.9886e+01, 6.8958e-01, - 2DIAGNOSTIC, 19, -3.984533284496e-01, 9.926113459142e-05, 2.0491e+01, 6.0549e-01, - 2DIAGNOSTIC, 20, -3.984530904005e-01, 3.228327318099e-05, 2.1249e+01, 7.5757e-01, - 2DIAGNOSTIC, 21, -3.984530349752e-01, 1.691385597136e-06, 2.1850e+01, 6.0139e-01, - 2DIAGNOSTIC, 22, -3.984528964764e-01, 1.441056512466e-06, 2.2638e+01, 7.8822e-01, - 2DIAGNOSTIC, 23, -3.984529653799e-01, 1.334260808526e-06, 2.3330e+01, 6.9158e-01, - 2DIAGNOSTIC, 24, -3.984528811809e-01, 1.279656945123e-06, 2.3934e+01, 6.0360e-01, - 2DIAGNOSTIC, 25, -3.984528389643e-01, 1.229593432441e-06, 2.4532e+01, 5.9867e-01, - 2DIAGNOSTIC, 26, -3.984530126953e-01, 1.190113416864e-06, 2.5215e+01, 6.8284e-01, - 2DIAGNOSTIC, 27, -3.984531659022e-01, 1.161775753329e-06, 2.5903e+01, 6.8800e-01, - 2DIAGNOSTIC, 28, -3.984529887400e-01, 1.129744738447e-06, 2.6506e+01, 6.0318e-01, - 2DIAGNOSTIC, 29, -3.984528895681e-01, 1.097944632683e-06, 2.7207e+01, 7.0059e-01, - 2DIAGNOSTIC, 30, -3.984529353410e-01, 1.063884553482e-06, 2.7916e+01, 7.0930e-01, - 2DIAGNOSTIC, 31, -3.984526236393e-01, 1.023279060014e-06, 2.8780e+01, 8.6350e-01, - Elapsed time (stage 1): 2.9198e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.017896946772e-01, 1.797693134862e+308, 2.9508e-01, 2.9507e-01, - 1DIAGNOSTIC, 2, -9.108819540315e-01, 1.797693134862e+308, 4.0234e-01, 1.0727e-01, - 1DIAGNOSTIC, 3, -9.184149534984e-01, 1.797693134862e+308, 5.0738e-01, 1.0504e-01, - 1DIAGNOSTIC, 4, -9.246874395280e-01, 1.797693134862e+308, 6.0632e-01, 9.8934e-02, - 1DIAGNOSTIC, 5, -9.297960859000e-01, 1.797693134862e+308, 7.0768e-01, 1.0137e-01, - 1DIAGNOSTIC, 6, -9.335258973397e-01, 1.797693134862e+308, 8.0185e-01, 9.4164e-02, - 1DIAGNOSTIC, 7, -9.368891612846e-01, 1.797693134862e+308, 9.0484e-01, 1.0300e-01, - 1DIAGNOSTIC, 8, -9.398527866005e-01, 1.797693134862e+308, 1.0023e+00, 9.7433e-02, - 1DIAGNOSTIC, 9, -9.424547030661e-01, 1.797693134862e+308, 1.0939e+00, 9.1669e-02, - 1DIAGNOSTIC, 10, -9.447603385819e-01, 2.817318611959e-03, 1.1874e+00, 9.3457e-02, - 1DIAGNOSTIC, 11, -9.468034605108e-01, 2.132763336590e-03, 1.2805e+00, 9.3048e-02, - 1DIAGNOSTIC, 12, -9.485757812622e-01, 1.646283370504e-03, 1.3787e+00, 9.8277e-02, - 1DIAGNOSTIC, 13, -9.502479830099e-01, 1.300494593859e-03, 1.4766e+00, 9.7907e-02, - 1DIAGNOSTIC, 14, -9.516590510131e-01, 1.051813386914e-03, 1.5763e+00, 9.9624e-02, - 1DIAGNOSTIC, 15, -9.530243760084e-01, 8.708772258769e-04, 1.6781e+00, 1.0184e-01, - 1DIAGNOSTIC, 16, -9.542140059379e-01, 7.254271442961e-04, 1.7785e+00, 1.0036e-01, - 1DIAGNOSTIC, 17, -9.553140494070e-01, 6.094226095270e-04, 1.8771e+00, 9.8594e-02, - 1DIAGNOSTIC, 18, -9.563124978141e-01, 5.162593411982e-04, 1.9817e+00, 1.0460e-01, - 1DIAGNOSTIC, 19, -9.572253171218e-01, 4.406741671177e-04, 2.0876e+00, 1.0591e-01, - 1DIAGNOSTIC, 20, -9.580587500682e-01, 3.788425388257e-04, 2.1881e+00, 1.0058e-01, - 1DIAGNOSTIC, 21, -9.588382121364e-01, 3.279684898089e-04, 2.2916e+00, 1.0348e-01, - 1DIAGNOSTIC, 22, -9.595072592707e-01, 2.843555042283e-04, 2.3952e+00, 1.0360e-01, - 1DIAGNOSTIC, 23, -9.601082644635e-01, 2.476004695808e-04, 2.5006e+00, 1.0534e-01, - 1DIAGNOSTIC, 24, -9.606490686910e-01, 2.150624232709e-04, 2.6082e+00, 1.0764e-01, - 1DIAGNOSTIC, 25, -9.611374206607e-01, 1.871549487197e-04, 2.7174e+00, 1.0918e-01, - 1DIAGNOSTIC, 26, -9.615748612896e-01, 1.625308870877e-04, 2.8177e+00, 1.0038e-01, - 1DIAGNOSTIC, 27, -9.619651583300e-01, 1.409585287956e-04, 2.9117e+00, 9.3956e-02, - 1DIAGNOSTIC, 28, -9.623103084226e-01, 1.220139423963e-04, 3.0079e+00, 9.6241e-02, - 1DIAGNOSTIC, 29, -9.626400412978e-01, 1.056932923857e-04, 3.1032e+00, 9.5225e-02, - 1DIAGNOSTIC, 30, -9.629198321761e-01, 9.157128740253e-05, 3.2111e+00, 1.0791e-01, - 1DIAGNOSTIC, 31, -9.631703028013e-01, 7.965424282774e-05, 3.3088e+00, 9.7766e-02, - 1DIAGNOSTIC, 32, -9.633946875142e-01, 6.931310720373e-05, 3.4151e+00, 1.0629e-01, - 1DIAGNOSTIC, 33, -9.635903784461e-01, 6.027315454055e-05, 3.5122e+00, 9.7015e-02, - 1DIAGNOSTIC, 34, -9.637623176144e-01, 5.234115094797e-05, 3.6110e+00, 9.8882e-02, - 1DIAGNOSTIC, 35, -9.639131432926e-01, 4.538362590449e-05, 3.7180e+00, 1.0697e-01, - 1DIAGNOSTIC, 36, -9.640497303656e-01, 3.930401580418e-05, 3.8202e+00, 1.0224e-01, - 1DIAGNOSTIC, 37, -9.640881678442e-01, 3.331880051881e-05, 3.9217e+00, 1.0144e-01, - 1DIAGNOSTIC, 38, -9.641944534998e-01, 2.808445860591e-05, 4.0264e+00, 1.0471e-01, - 1DIAGNOSTIC, 39, -9.642538970929e-01, 2.346341140400e-05, 4.1250e+00, 9.8644e-02, - 1DIAGNOSTIC, 40, -9.643341654678e-01, 1.957094786081e-05, 4.2294e+00, 1.0440e-01, - 1DIAGNOSTIC, 41, -9.642399696772e-01, 1.518862479400e-05, 4.3297e+00, 1.0025e-01, - 1DIAGNOSTIC, 42, -9.640900954850e-01, 1.018649180665e-05, 4.4268e+00, 9.7165e-02, - 1DIAGNOSTIC, 43, -9.640738293219e-01, 5.775038923295e-06, 4.5203e+00, 9.3436e-02, - 1DIAGNOSTIC, 44, -9.640624260488e-01, 2.129568076610e-06, 4.6205e+00, 1.0020e-01, - 1DIAGNOSTIC, 45, -9.639736586348e-01, -1.109205670362e-06, 4.7160e+00, 9.5498e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.266306428677e-01, 1.797693134862e+308, 5.5559e+00, 8.3993e-01, - 1DIAGNOSTIC, 2, -9.300475343744e-01, 1.797693134862e+308, 6.2339e+00, 6.7800e-01, - 1DIAGNOSTIC, 3, -9.337096129347e-01, 1.797693134862e+308, 6.9384e+00, 7.0446e-01, - 1DIAGNOSTIC, 4, -9.367985688515e-01, 1.797693134862e+308, 7.6121e+00, 6.7378e-01, - 1DIAGNOSTIC, 5, -9.391768655883e-01, 1.797693134862e+308, 8.2817e+00, 6.6954e-01, - 1DIAGNOSTIC, 6, -9.412631540024e-01, 1.797693134862e+308, 8.9529e+00, 6.7120e-01, - 1DIAGNOSTIC, 7, -9.428511162995e-01, 1.797693134862e+308, 9.6254e+00, 6.7255e-01, - 1DIAGNOSTIC, 8, -9.441455219870e-01, 1.797693134862e+308, 1.0333e+01, 7.0750e-01, - 1DIAGNOSTIC, 9, -9.452406737177e-01, 1.797693134862e+308, 1.1008e+01, 6.7531e-01, - 1DIAGNOSTIC, 10, -9.460825449260e-01, 1.311967873278e-03, 1.1693e+01, 6.8488e-01, - 1DIAGNOSTIC, 11, -9.468092867786e-01, 9.953060183985e-04, 1.2355e+01, 6.6184e-01, - 1DIAGNOSTIC, 12, -9.474531742234e-01, 7.436142501228e-04, 1.3046e+01, 6.9111e-01, - 1DIAGNOSTIC, 13, -9.480246830302e-01, 5.611930580971e-04, 1.3719e+01, 6.7339e-01, - 1DIAGNOSTIC, 14, -9.485401090237e-01, 4.311593705383e-04, 1.4395e+01, 6.7588e-01, - 1DIAGNOSTIC, 15, -9.489991072030e-01, 3.357690981578e-04, 1.5077e+01, 6.8139e-01, - 1DIAGNOSTIC, 16, -9.494294310425e-01, 2.687287410584e-04, 1.5754e+01, 6.7730e-01, - 1DIAGNOSTIC, 17, -9.498254809902e-01, 2.198395629535e-04, 1.6429e+01, 6.7455e-01, - 1DIAGNOSTIC, 18, -9.501871253810e-01, 1.836488027361e-04, 1.7101e+01, 6.7215e-01, - 1DIAGNOSTIC, 19, -9.505246249416e-01, 1.569061983495e-04, 1.7781e+01, 6.8052e-01, - 1DIAGNOSTIC, 20, -9.508409929912e-01, 1.356658115955e-04, 1.8466e+01, 6.8481e-01, - 1DIAGNOSTIC, 21, -9.511315798298e-01, 1.183761754646e-04, 1.9142e+01, 6.7608e-01, - 1DIAGNOSTIC, 22, -9.514059959423e-01, 1.041664624623e-04, 1.9824e+01, 6.8196e-01, - 1DIAGNOSTIC, 23, -9.516487211142e-01, 9.210785859665e-05, 2.0511e+01, 6.8641e-01, - 1DIAGNOSTIC, 24, -9.518757647658e-01, 8.175375384324e-05, 2.1182e+01, 6.7157e-01, - 1DIAGNOSTIC, 25, -9.520960134662e-01, 7.274978531984e-05, 2.1855e+01, 6.7333e-01, - 1DIAGNOSTIC, 26, -9.523018197991e-01, 6.498072880932e-05, 2.2544e+01, 6.8824e-01, - 1DIAGNOSTIC, 27, -9.524987500142e-01, 5.830494056997e-05, 2.3204e+01, 6.6004e-01, - 1DIAGNOSTIC, 28, -9.526818909015e-01, 5.249552523374e-05, 2.3872e+01, 6.6813e-01, - 1DIAGNOSTIC, 29, -9.528540692001e-01, 4.745451957440e-05, 2.4542e+01, 6.7033e-01, - 1DIAGNOSTIC, 30, -9.530087828541e-01, 4.302527939037e-05, 2.5213e+01, 6.7048e-01, - 1DIAGNOSTIC, 31, -9.531606380025e-01, 3.914207490635e-05, 2.5874e+01, 6.6131e-01, - 1DIAGNOSTIC, 32, -9.533047384715e-01, 3.576983495312e-05, 2.6547e+01, 6.7277e-01, - 1DIAGNOSTIC, 33, -9.534435672036e-01, 3.273193781610e-05, 2.7219e+01, 6.7237e-01, - 1DIAGNOSTIC, 34, -9.535792926061e-01, 3.001947085872e-05, 2.7898e+01, 6.7872e-01, - 1DIAGNOSTIC, 35, -9.537094659925e-01, 2.766705193520e-05, 2.8573e+01, 6.7553e-01, - 1DIAGNOSTIC, 36, -9.538352125734e-01, 2.562967843651e-05, 2.9248e+01, 6.7505e-01, - 1DIAGNOSTIC, 37, -9.539560623259e-01, 2.389155225225e-05, 2.9929e+01, 6.8094e-01, - 1DIAGNOSTIC, 38, -9.540724625515e-01, 2.238562870418e-05, 3.0617e+01, 6.8751e-01, - 1DIAGNOSTIC, 39, -9.541837138092e-01, 2.105665302212e-05, 3.1289e+01, 6.7210e-01, - 1DIAGNOSTIC, 40, -9.542930311403e-01, 1.981789869195e-05, 3.1966e+01, 6.7748e-01, - 1DIAGNOSTIC, 41, -9.543966752739e-01, 1.866909774398e-05, 3.2646e+01, 6.7963e-01, - 1DIAGNOSTIC, 42, -9.544988087891e-01, 1.760234653794e-05, 3.3324e+01, 6.7797e-01, - 1DIAGNOSTIC, 43, -9.545887913124e-01, 1.654976566880e-05, 3.4003e+01, 6.7860e-01, - 1DIAGNOSTIC, 44, -9.546895701609e-01, 1.562653888122e-05, 3.4681e+01, 6.7860e-01, - 1DIAGNOSTIC, 45, -9.547663020777e-01, 1.467641529136e-05, 3.5355e+01, 6.7411e-01, - 1DIAGNOSTIC, 46, -9.548470219089e-01, 1.376055110561e-05, 3.6034e+01, 6.7893e-01, - 1DIAGNOSTIC, 47, -9.549099454202e-01, 1.278851893384e-05, 3.6705e+01, 6.7120e-01, - 1DIAGNOSTIC, 48, -9.549789523521e-01, 1.184121624654e-05, 3.7388e+01, 6.8280e-01, - 1DIAGNOSTIC, 49, -9.550429965082e-01, 1.091796623431e-05, 3.8067e+01, 6.7861e-01, - 1DIAGNOSTIC, 50, -9.550974585668e-01, 1.001492142952e-05, 3.8748e+01, 6.8090e-01, - 1DIAGNOSTIC, 51, -9.551571733753e-01, 9.196752816840e-06, 3.9453e+01, 7.0517e-01, - 1DIAGNOSTIC, 52, -9.552054911473e-01, 8.443828465259e-06, 4.0130e+01, 6.7710e-01, - 1DIAGNOSTIC, 53, -9.552533917535e-01, 7.734881539396e-06, 4.0814e+01, 6.8407e-01, - 1DIAGNOSTIC, 54, -9.552987016715e-01, 7.168390434749e-06, 4.1555e+01, 7.4126e-01, - 1DIAGNOSTIC, 55, -9.553352268912e-01, 6.597554786193e-06, 4.2248e+01, 6.9268e-01, - 1DIAGNOSTIC, 56, -9.553715879695e-01, 6.089053396465e-06, 4.2923e+01, 6.7501e-01, - 1DIAGNOSTIC, 57, -9.553972729991e-01, 5.525804062254e-06, 4.3595e+01, 6.7199e-01, - 1DIAGNOSTIC, 58, -9.554223794362e-01, 4.984567273072e-06, 4.4274e+01, 6.7922e-01, - 1DIAGNOSTIC, 59, -9.554419177714e-01, 4.454271728883e-06, 4.4947e+01, 6.7318e-01, - 1DIAGNOSTIC, 60, -9.554690009833e-01, 3.966262711312e-06, 4.5632e+01, 6.8417e-01, - 1DIAGNOSTIC, 61, -9.554917093544e-01, 3.562836209718e-06, 4.6310e+01, 6.7889e-01, - 1DIAGNOSTIC, 62, -9.555107967921e-01, 3.200708899361e-06, 4.6983e+01, 6.7279e-01, - 1DIAGNOSTIC, 63, -9.555282571719e-01, 2.898503590112e-06, 4.7647e+01, 6.6336e-01, - 1DIAGNOSTIC, 64, -9.555452857393e-01, 2.663815434557e-06, 4.8311e+01, 6.6479e-01, - 1DIAGNOSTIC, 65, -9.555608411955e-01, 2.463238705723e-06, 4.8993e+01, 6.8147e-01, - 1DIAGNOSTIC, 66, -9.555746495372e-01, 2.303175389941e-06, 4.9670e+01, 6.7734e-01, - 1DIAGNOSTIC, 67, -9.555871580612e-01, 2.141010483868e-06, 5.0342e+01, 6.7224e-01, - 1DIAGNOSTIC, 68, -9.555990681181e-01, 1.984906375960e-06, 5.1015e+01, 6.7294e-01, - 1DIAGNOSTIC, 69, -9.556040455180e-01, 1.791013658750e-06, 5.1700e+01, 6.8446e-01, - 1DIAGNOSTIC, 70, -9.556134752389e-01, 1.629170941070e-06, 5.2391e+01, 6.9159e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.081700934717e-01, 1.797693134862e+308, 5.8127e+01, 5.7354e+00, - 1DIAGNOSTIC, 2, -9.111396536220e-01, 1.797693134862e+308, 6.3550e+01, 5.4236e+00, - 1DIAGNOSTIC, 3, -9.140779383039e-01, 1.797693134862e+308, 6.8982e+01, 5.4311e+00, - 1DIAGNOSTIC, 4, -9.168828479997e-01, 1.797693134862e+308, 7.4382e+01, 5.4005e+00, - 1DIAGNOSTIC, 5, -9.196057501068e-01, 1.797693134862e+308, 7.9737e+01, 5.3547e+00, - 1DIAGNOSTIC, 6, -9.219563453435e-01, 1.797693134862e+308, 8.5065e+01, 5.3282e+00, - 1DIAGNOSTIC, 7, -9.240023887805e-01, 1.797693134862e+308, 9.0416e+01, 5.3511e+00, - 1DIAGNOSTIC, 8, -9.256412955093e-01, 1.797693134862e+308, 9.5743e+01, 5.3269e+00, - 1DIAGNOSTIC, 9, -9.270323955997e-01, 1.797693134862e+308, 1.0113e+02, 5.3826e+00, - 1DIAGNOSTIC, 10, -9.282365548288e-01, 1.417977621549e-03, 1.0650e+02, 5.3768e+00, - 1DIAGNOSTIC, 11, -9.293026058085e-01, 1.148428684525e-03, 1.1187e+02, 5.3643e+00, - 1DIAGNOSTIC, 12, -9.301130462711e-01, 9.174175889464e-04, 1.1729e+02, 5.4208e+00, - 1DIAGNOSTIC, 13, -9.309584249992e-01, 7.284275789283e-04, 1.2264e+02, 5.3488e+00, - 1DIAGNOSTIC, 14, -9.316053873445e-01, 5.756531458027e-04, 1.2798e+02, 5.3439e+00, - 1DIAGNOSTIC, 15, -9.321805270477e-01, 4.579414684164e-04, 1.3337e+02, 5.3914e+00, - 1DIAGNOSTIC, 16, -9.326955231868e-01, 3.676758534244e-04, 1.3872e+02, 5.3533e+00, - 1DIAGNOSTIC, 17, -9.331612860740e-01, 2.993732254087e-04, 1.4414e+02, 5.4110e+00, - 1DIAGNOSTIC, 18, -9.335914211679e-01, 2.461355839638e-04, 1.4949e+02, 5.3586e+00, - 1DIAGNOSTIC, 19, -9.339791948512e-01, 2.042939214749e-04, 1.5488e+02, 5.3862e+00, - 1DIAGNOSTIC, 20, -9.343229886073e-01, 1.713105810436e-04, 1.6025e+02, 5.3645e+00, - 1DIAGNOSTIC, 21, -9.346526280329e-01, 1.458879696827e-04, 1.6561e+02, 5.3662e+00, - 1DIAGNOSTIC, 22, -9.349545067554e-01, 1.245836743854e-04, 1.7100e+02, 5.3841e+00, - 1DIAGNOSTIC, 23, -9.352317417201e-01, 1.084236662637e-04, 1.7636e+02, 5.3615e+00, - 1DIAGNOSTIC, 24, -9.354861278475e-01, 9.495885461664e-05, 1.8169e+02, 5.3309e+00, - 1DIAGNOSTIC, 25, -9.357255307286e-01, 8.365347233349e-05, 1.8710e+02, 5.4115e+00, - 1DIAGNOSTIC, 26, -9.359505041072e-01, 7.408767365471e-05, 1.9249e+02, 5.3861e+00, - 1DIAGNOSTIC, 27, -9.361603499243e-01, 6.593545241560e-05, 1.9789e+02, 5.4013e+00, - 1DIAGNOSTIC, 28, -9.363539947721e-01, 5.899746298075e-05, 2.0333e+02, 5.4475e+00, - 1DIAGNOSTIC, 29, -9.365335650137e-01, 5.299564369628e-05, 2.0878e+02, 5.4431e+00, - 1DIAGNOSTIC, 30, -9.367036297825e-01, 4.766419492431e-05, 2.1421e+02, 5.4278e+00, - 1DIAGNOSTIC, 31, -9.368599135628e-01, 4.300151438017e-05, 2.1963e+02, 5.4297e+00, - 1DIAGNOSTIC, 32, -9.370114555018e-01, 3.893471913254e-05, 2.2506e+02, 5.4294e+00, - 1DIAGNOSTIC, 33, -9.371503926596e-01, 3.532560740530e-05, 2.3047e+02, 5.4064e+00, - 1DIAGNOSTIC, 34, -9.372825461703e-01, 3.210075404787e-05, 2.3591e+02, 5.4360e+00, - 1DIAGNOSTIC, 35, -9.374046121353e-01, 2.921683748971e-05, 2.4136e+02, 5.4519e+00, - 1DIAGNOSTIC, 36, -9.375222734281e-01, 2.667434339892e-05, 2.4679e+02, 5.4268e+00, - 1DIAGNOSTIC, 37, -9.376351995499e-01, 2.444738217157e-05, 2.5220e+02, 5.4181e+00, - 1DIAGNOSTIC, 38, -9.377389972575e-01, 2.245221534290e-05, 2.5771e+02, 5.5036e+00, - 1DIAGNOSTIC, 39, -9.378352652437e-01, 2.063301852650e-05, 2.6320e+02, 5.4917e+00, - 1DIAGNOSTIC, 40, -9.379244218716e-01, 1.897076757747e-05, 2.6979e+02, 6.5946e+00, - 1DIAGNOSTIC, 41, -9.380074091479e-01, 1.741423605083e-05, 2.7700e+02, 7.2106e+00, - 1DIAGNOSTIC, 42, -9.380880414070e-01, 1.600996004624e-05, 2.8399e+02, 6.9861e+00, - 1DIAGNOSTIC, 43, -9.381684450220e-01, 1.475103892126e-05, 2.9116e+02, 7.1656e+00, - 1DIAGNOSTIC, 44, -9.382424180719e-01, 1.362197037592e-05, 2.9808e+02, 6.9239e+00, - 1DIAGNOSTIC, 45, -9.383099469282e-01, 1.257931231936e-05, 3.0531e+02, 7.2266e+00, - 1DIAGNOSTIC, 46, -9.383726257844e-01, 1.162762957004e-05, 3.1258e+02, 7.2696e+00, - 1DIAGNOSTIC, 47, -9.384299028091e-01, 1.076057181526e-05, 3.1955e+02, 6.9706e+00, - 1DIAGNOSTIC, 48, -9.384799369786e-01, 9.928419369691e-06, 3.2683e+02, 7.2796e+00, - 1DIAGNOSTIC, 49, -9.385285206301e-01, 9.133072899719e-06, 3.3389e+02, 7.0630e+00, - 1DIAGNOSTIC, 50, -9.385782621320e-01, 8.393706718166e-06, 3.4101e+02, 7.1214e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.053953452478e-01, 1.797693134862e+308, 4.0001e+02, 5.9000e+01, - 1DIAGNOSTIC, 2, -9.069880470059e-01, 1.797693134862e+308, 4.5326e+02, 5.3250e+01, - 1DIAGNOSTIC, 3, -9.087125101709e-01, 1.797693134862e+308, 4.9721e+02, 4.3946e+01, - 1DIAGNOSTIC, 4, -9.102081535995e-01, 1.797693134862e+308, 5.4692e+02, 4.9709e+01, - 1DIAGNOSTIC, 5, -9.117872875380e-01, 1.797693134862e+308, 5.9534e+02, 4.8421e+01, - 1DIAGNOSTIC, 6, -9.133153257957e-01, 1.797693134862e+308, 6.4659e+02, 5.1252e+01, - 1DIAGNOSTIC, 7, -9.146649280755e-01, 1.797693134862e+308, 6.9717e+02, 5.0584e+01, - 1DIAGNOSTIC, 8, -9.159486680500e-01, 1.797693134862e+308, 7.4756e+02, 5.0388e+01, - 1DIAGNOSTIC, 9, -9.171865706905e-01, 1.797693134862e+308, 7.9890e+02, 5.1343e+01, - 1DIAGNOSTIC, 10, -9.183903234355e-01, 9.165726459974e-04, 8.4724e+02, 4.8336e+01, - 1DIAGNOSTIC, 11, -9.194748755425e-01, 7.955395644845e-04, 8.9777e+02, 5.0529e+01, - 1DIAGNOSTIC, 12, -9.203725961335e-01, 6.873812371735e-04, 9.5014e+02, 5.2376e+01, - 1DIAGNOSTIC, 13, -9.210998420354e-01, 5.922345132838e-04, 1.0032e+03, 5.3040e+01, - 1DIAGNOSTIC, 14, -9.216795690059e-01, 5.026709483676e-04, 1.0557e+03, 5.2512e+01, - 1DIAGNOSTIC, 15, -9.221464480478e-01, 4.212260142491e-04, 1.1086e+03, 5.2946e+01, - 1DIAGNOSTIC, 16, -9.226317193537e-01, 3.502082889364e-04, 1.1615e+03, 5.2891e+01, - 1DIAGNOSTIC, 17, -9.228402406712e-01, 2.835764680496e-04, 1.2138e+03, 5.2282e+01, - 1DIAGNOSTIC, 18, -9.231051355138e-01, 2.248310348281e-04, 1.2664e+03, 5.2537e+01, - 1DIAGNOSTIC, 19, -9.233492331740e-01, 1.755306541023e-04, 1.3181e+03, 5.1734e+01, - 1DIAGNOSTIC, 20, -9.234928237684e-01, 1.355997073375e-04, 1.3694e+03, 5.1302e+01, - Elapsed time (stage 2): 1370 - - -Total elapsed time: 1424 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:29 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:29 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:32 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:36 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:40 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 14904 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:40 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:44 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 14956 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:44 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/anat/sub-PNC001_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:47 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:47 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15001 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:47 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15007 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:12:47 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:16 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:18 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:18 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:23 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:23 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:24 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:25 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/surf/sub-PNC001_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:28 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:37 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:49 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01/sub-PNC001_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC001 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:50 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC001 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:50 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC001 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15786 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:52 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:53 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc/sub-PNC001_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/xfm/sub-PNC001_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15829 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:54 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:13:54 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC001_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 76.600 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/logs/proc_func_17-03-2024-6776.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:14:00 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC001 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-01/QC/sub-PNC001_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/30257_micapipe_proc-func_sub-PNC001_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC001* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 76.817 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC001_ses-01 -========================reprocessing without filter=================== -sub-PNC001_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC001 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC001 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC001 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC001 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:14:04 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:14:04 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-1_bold.nii.gz is 38.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:16:20 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:18:37 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:18:52 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.75 (mm) at sub-brick 1 -++ Max delta displ in automask = 0.23 (mm) at sub-brick 91 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:32:54 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:33:12 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-2_bold.nii.gz is 38.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:35:30 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:37:46 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-02/func/sub-PNC001_ses-02_task-rest_echo-3_bold.nii.gz is 38.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:40:05 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.291 -2.799 2.676 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 75.5 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.288 -4.325 4.955 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 77.5 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:45:11 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:45:41 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5557cec446f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.3, 55.9598, -117.921] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5557ceabb730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5557cec5b320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5557cec47fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [78.064, 115.969, -133.842] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5557cec4de10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5557cf458230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5557cf4565c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.3, 55.9598, -117.921] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5557cec4a3f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5557cff82450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5557cf454da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [78.064, 115.969, -133.842] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5557cec51360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5557d077c780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.953753978840e-01, 1.797693134862e+308, 4.5794e-02, 4.5793e-02, - 2DIAGNOSTIC, 2, -7.986732697681e-01, 1.797693134862e+308, 4.7128e-02, 1.3340e-03, - 2DIAGNOSTIC, 3, -8.060505216898e-01, 1.797693134862e+308, 4.8919e-02, 1.7910e-03, - 2DIAGNOSTIC, 4, -8.168256004761e-01, 1.797693134862e+308, 5.0973e-02, 2.0540e-03, - 2DIAGNOSTIC, 5, -8.277713596338e-01, 1.797693134862e+308, 5.2968e-02, 1.9951e-03, - 2DIAGNOSTIC, 6, -8.369639497220e-01, 1.797693134862e+308, 5.4808e-02, 1.8401e-03, - 2DIAGNOSTIC, 7, -8.488297350840e-01, 1.797693134862e+308, 5.6023e-02, 1.2150e-03, - 2DIAGNOSTIC, 8, -8.584894125115e-01, 1.797693134862e+308, 5.8091e-02, 2.0678e-03, - 2DIAGNOSTIC, 9, -8.697841667389e-01, 1.797693134862e+308, 6.0293e-02, 2.2020e-03, - 2DIAGNOSTIC, 10, -8.715641561677e-01, 6.539735833138e-03, 6.1813e-02, 1.5202e-03, - 2DIAGNOSTIC, 11, -8.760583452725e-01, 5.809838584380e-03, 6.3581e-02, 1.7679e-03, - 2DIAGNOSTIC, 12, -8.773571633748e-01, 4.814351950264e-03, 6.5015e-02, 1.4341e-03, - 2DIAGNOSTIC, 13, -8.790425530012e-01, 3.773661685811e-03, 6.6460e-02, 1.4451e-03, - 2DIAGNOSTIC, 14, -8.815478634328e-01, 2.859258626817e-03, 6.8401e-02, 1.9410e-03, - 2DIAGNOSTIC, 15, -8.868038252806e-01, 2.170541366501e-03, 7.0068e-02, 1.6670e-03, - 2DIAGNOSTIC, 16, -8.898344620387e-01, 1.623392793226e-03, 7.1992e-02, 1.9240e-03, - 2DIAGNOSTIC, 17, -8.923482365606e-01, 1.273168754632e-03, 7.3445e-02, 1.4529e-03, - 2DIAGNOSTIC, 18, -8.928115567115e-01, 1.029008091660e-03, 7.4911e-02, 1.4660e-03, - 2DIAGNOSTIC, 19, -8.956045566105e-01, 9.625032410951e-04, 7.6602e-02, 1.6909e-03, - 2DIAGNOSTIC, 20, -8.973548749881e-01, 8.683192482706e-04, 7.8026e-02, 1.4241e-03, - 2DIAGNOSTIC, 21, -8.975308295503e-01, 7.752200018677e-04, 7.9540e-02, 1.5140e-03, - 2DIAGNOSTIC, 22, -8.995557124589e-01, 6.695827008534e-04, 8.1749e-02, 2.2089e-03, - 2DIAGNOSTIC, 23, -9.008124095690e-01, 5.528948796256e-04, 8.4396e-02, 2.6469e-03, - 2DIAGNOSTIC, 24, -9.019633574886e-01, 4.427732342250e-04, 8.5946e-02, 1.5500e-03, - 2DIAGNOSTIC, 25, -9.027784858117e-01, 3.789456667852e-04, 8.7474e-02, 1.5280e-03, - 2DIAGNOSTIC, 26, -9.036093354271e-01, 3.329519555558e-04, 8.9423e-02, 1.9491e-03, - 2DIAGNOSTIC, 27, -9.042728336866e-01, 2.978720243842e-04, 9.0961e-02, 1.5380e-03, - 2DIAGNOSTIC, 28, -9.052079113651e-01, 2.527287651814e-04, 9.2487e-02, 1.5261e-03, - 2DIAGNOSTIC, 29, -9.062302634166e-01, 2.293712575718e-04, 9.4438e-02, 1.9510e-03, - 2DIAGNOSTIC, 30, -9.068527671108e-01, 2.119067966602e-04, 9.5764e-02, 1.3261e-03, - 2DIAGNOSTIC, 31, -9.077622665646e-01, 1.866851593147e-04, 9.7108e-02, 1.3440e-03, - 2DIAGNOSTIC, 32, -9.090928491999e-01, 1.792354406376e-04, 9.8405e-02, 1.2970e-03, - 2DIAGNOSTIC, 33, -9.171084965559e-01, 2.458373374692e-04, 1.0033e-01, 1.9209e-03, - 2DIAGNOSTIC, 34, -9.195815032958e-01, 3.174502493364e-04, 1.0263e-01, 2.3022e-03, - 2DIAGNOSTIC, 35, -9.196483683925e-01, 3.631617862293e-04, 1.0392e-01, 1.2910e-03, - 2DIAGNOSTIC, 36, -9.191860703734e-01, 3.764246003833e-04, 1.0524e-01, 1.3249e-03, - 2DIAGNOSTIC, 37, -9.195654512592e-01, 3.622685895396e-04, 1.0658e-01, 1.3380e-03, - 2DIAGNOSTIC, 38, -9.198748379438e-01, 3.235903171697e-04, 1.0789e-01, 1.3070e-03, - 2DIAGNOSTIC, 39, -9.203377963178e-01, 2.679210728779e-04, 1.0937e-01, 1.4851e-03, - 2DIAGNOSTIC, 40, -9.208481175172e-01, 1.996661856584e-04, 1.1067e-01, 1.2980e-03, - 2DIAGNOSTIC, 41, -9.210824356368e-01, 1.256550809555e-04, 1.1237e-01, 1.6961e-03, - 2DIAGNOSTIC, 42, -9.212808789505e-01, 5.355314040838e-05, 1.1408e-01, 1.7099e-03, - 2DIAGNOSTIC, 43, -9.214908326823e-01, 4.055091144238e-05, 1.1536e-01, 1.2801e-03, - 2DIAGNOSTIC, 44, -9.216552910263e-01, 4.345265199440e-05, 1.1688e-01, 1.5199e-03, - 2DIAGNOSTIC, 45, -9.230593840417e-01, 5.267739113682e-05, 1.1980e-01, 2.9199e-03, - 2DIAGNOSTIC, 46, -9.231012447123e-01, 5.331594841474e-05, 1.2188e-01, 2.0859e-03, - 2DIAGNOSTIC, 47, -9.220028520813e-01, 4.413903138809e-05, 1.2341e-01, 1.5290e-03, - 2DIAGNOSTIC, 48, -9.209004645996e-01, 2.624218494967e-05, 1.2495e-01, 1.5328e-03, - 2DIAGNOSTIC, 49, -9.209233996861e-01, 9.822966288126e-06, 1.2640e-01, 1.4570e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.119777678373e-01, 1.797693134862e+308, 1.7180e-01, 4.5395e-02, - 2DIAGNOSTIC, 2, -5.123343860118e-01, 1.797693134862e+308, 1.7436e-01, 2.5599e-03, - 2DIAGNOSTIC, 3, -5.143613283785e-01, 1.797693134862e+308, 1.7684e-01, 2.4860e-03, - 2DIAGNOSTIC, 4, -5.159432749435e-01, 1.797693134862e+308, 1.7926e-01, 2.4190e-03, - 2DIAGNOSTIC, 5, -5.175451781427e-01, 1.797693134862e+308, 1.8156e-01, 2.2960e-03, - 2DIAGNOSTIC, 6, -5.201240083907e-01, 1.797693134862e+308, 1.8376e-01, 2.1970e-03, - 2DIAGNOSTIC, 7, -5.293531249105e-01, 1.797693134862e+308, 1.8628e-01, 2.5280e-03, - 2DIAGNOSTIC, 8, -5.350686784305e-01, 1.797693134862e+308, 1.8916e-01, 2.8782e-03, - 2DIAGNOSTIC, 9, -5.379742292018e-01, 1.797693134862e+308, 1.9136e-01, 2.1942e-03, - 2DIAGNOSTIC, 10, -5.396478388716e-01, 3.874273436851e-03, 1.9377e-01, 2.4149e-03, - 2DIAGNOSTIC, 11, -5.422646676674e-01, 3.800901201025e-03, 1.9616e-01, 2.3842e-03, - 2DIAGNOSTIC, 12, -5.448068893768e-01, 3.520154562322e-03, 1.9955e-01, 3.3948e-03, - 2DIAGNOSTIC, 13, -5.477537361418e-01, 3.165923793625e-03, 2.0323e-01, 3.6829e-03, - 2DIAGNOSTIC, 14, -5.481307005023e-01, 2.654201011666e-03, 2.0584e-01, 2.6071e-03, - 2DIAGNOSTIC, 15, -5.492759216150e-01, 2.074351559065e-03, 2.0843e-01, 2.5899e-03, - 2DIAGNOSTIC, 16, -5.513114075851e-01, 1.527026241087e-03, 2.1104e-01, 2.6081e-03, - 2DIAGNOSTIC, 17, -5.529513225689e-01, 1.240151089643e-03, 2.1364e-01, 2.6000e-03, - 2DIAGNOSTIC, 18, -5.621819033709e-01, 1.309701165105e-03, 2.1630e-01, 2.6650e-03, - 2DIAGNOSTIC, 19, -6.205284618043e-01, 2.935564475376e-03, 2.1978e-01, 3.4752e-03, - 2DIAGNOSTIC, 20, -7.105386879628e-01, 6.407784058465e-03, 2.2314e-01, 3.3631e-03, - 2DIAGNOSTIC, 21, -7.131344648526e-01, 8.950051387412e-03, 2.2911e-01, 5.9662e-03, - 2DIAGNOSTIC, 22, -7.141355542682e-01, 1.049717040902e-02, 2.3176e-01, 2.6562e-03, - 2DIAGNOSTIC, 23, -7.166705176786e-01, 1.104613468053e-02, 2.3456e-01, 2.7912e-03, - 2DIAGNOSTIC, 24, -7.181191680681e-01, 1.052239348052e-02, 2.3761e-01, 3.0541e-03, - 2DIAGNOSTIC, 25, -7.189067520300e-01, 9.077523369188e-03, 2.4060e-01, 2.9879e-03, - 2DIAGNOSTIC, 26, -7.190948285334e-01, 6.976520508432e-03, 2.4305e-01, 2.4509e-03, - 2DIAGNOSTIC, 27, -7.192903487820e-01, 4.479341255913e-03, 2.4538e-01, 2.3370e-03, - 2DIAGNOSTIC, 28, -7.202090198474e-01, 1.940677416297e-03, 2.4816e-01, 2.7750e-03, - 2DIAGNOSTIC, 29, -7.211902728181e-01, 3.554657930344e-04, 2.5202e-01, 3.8640e-03, - 2DIAGNOSTIC, 30, -7.220159624076e-01, 2.848408086540e-04, 2.5458e-01, 2.5589e-03, - 2DIAGNOSTIC, 31, -7.220124927854e-01, 2.323187223867e-04, 2.5710e-01, 2.5220e-03, - 2DIAGNOSTIC, 32, -7.222258591505e-01, 1.791666089370e-04, 2.6009e-01, 2.9860e-03, - 2DIAGNOSTIC, 33, -7.224708667763e-01, 1.513141401603e-04, 2.6372e-01, 3.6271e-03, - 2DIAGNOSTIC, 34, -7.224951323527e-01, 1.304846090621e-04, 2.6644e-01, 2.7189e-03, - 2DIAGNOSTIC, 35, -7.224444586393e-01, 1.084289765433e-04, 2.6903e-01, 2.5930e-03, - 2DIAGNOSTIC, 36, -7.223931265195e-01, 7.964999699919e-05, 2.7157e-01, 2.5411e-03, - 2DIAGNOSTIC, 37, -7.224824247367e-01, 4.864715295758e-05, 2.7409e-01, 2.5148e-03, - 2DIAGNOSTIC, 38, -7.225669209968e-01, 2.658828927646e-05, 2.7695e-01, 2.8620e-03, - 2DIAGNOSTIC, 39, -7.227910388370e-01, 1.701608662582e-05, 2.7985e-01, 2.8980e-03, - 2DIAGNOSTIC, 40, -7.232414323354e-01, 2.079624698222e-05, 2.8271e-01, 2.8660e-03, - 2DIAGNOSTIC, 41, -7.232826994478e-01, 2.276865945868e-05, 2.8553e-01, 2.8150e-03, - 2DIAGNOSTIC, 42, -7.232735054232e-01, 2.470152943605e-05, 2.8800e-01, 2.4700e-03, - 2DIAGNOSTIC, 43, -7.233216884711e-01, 2.732186766578e-05, 2.9042e-01, 2.4230e-03, - 2DIAGNOSTIC, 44, -7.237665823373e-01, 3.195694943670e-05, 2.9375e-01, 3.3259e-03, - 2DIAGNOSTIC, 45, -7.238457447313e-01, 3.350332474899e-05, 2.9735e-01, 3.6080e-03, - 2DIAGNOSTIC, 46, -7.236832786507e-01, 2.984286174522e-05, 3.0066e-01, 3.3059e-03, - 2DIAGNOSTIC, 47, -7.237417660072e-01, 2.515017614975e-05, 3.0301e-01, 2.3530e-03, - 2DIAGNOSTIC, 48, -7.238250770147e-01, 1.982859330181e-05, 3.0532e-01, 2.3100e-03, - 2DIAGNOSTIC, 49, -7.239637425650e-01, 1.593562826462e-05, 3.0819e-01, 2.8701e-03, - 2DIAGNOSTIC, 50, -7.244183884339e-01, 1.860534851124e-05, 3.1066e-01, 2.4641e-03, - 2DIAGNOSTIC, 51, -7.248683188966e-01, 2.363686479255e-05, 3.1301e-01, 2.3489e-03, - 2DIAGNOSTIC, 52, -7.251808232741e-01, 2.878365380122e-05, 3.1538e-01, 2.3758e-03, - 2DIAGNOSTIC, 53, -7.252069085670e-01, 3.152682969200e-05, 3.1777e-01, 2.3839e-03, - 2DIAGNOSTIC, 54, -7.255076674550e-01, 3.718997690979e-05, 3.2074e-01, 2.9750e-03, - 2DIAGNOSTIC, 55, -7.255721780056e-01, 4.020068253221e-05, 3.2296e-01, 2.2190e-03, - 2DIAGNOSTIC, 56, -7.255949379143e-01, 3.817351535262e-05, 3.2551e-01, 2.5489e-03, - 2DIAGNOSTIC, 57, -7.257331066689e-01, 3.414033295520e-05, 3.2808e-01, 2.5730e-03, - 2DIAGNOSTIC, 58, -7.256713052850e-01, 2.722685992373e-05, 3.3060e-01, 2.5191e-03, - 2DIAGNOSTIC, 59, -7.264163329870e-01, 2.440009967093e-05, 3.3303e-01, 2.4259e-03, - 2DIAGNOSTIC, 60, -7.264827852072e-01, 2.288513138933e-05, 3.3548e-01, 2.4500e-03, - 2DIAGNOSTIC, 61, -7.266485044349e-01, 2.360026724477e-05, 3.3798e-01, 2.5058e-03, - 2DIAGNOSTIC, 62, -7.266696419322e-01, 2.444048285880e-05, 3.4052e-01, 2.5401e-03, - 2DIAGNOSTIC, 63, -7.266766046834e-01, 2.313021712053e-05, 3.4276e-01, 2.2409e-03, - 2DIAGNOSTIC, 64, -7.266843022750e-01, 2.168212068150e-05, 3.4527e-01, 2.5060e-03, - 2DIAGNOSTIC, 65, -7.268060085551e-01, 1.943727155039e-05, 3.4774e-01, 2.4688e-03, - 2DIAGNOSTIC, 66, -7.268097939387e-01, 1.562462789217e-05, 3.5021e-01, 2.4719e-03, - 2DIAGNOSTIC, 67, -7.268124852390e-01, 1.145041986008e-05, 3.5264e-01, 2.4331e-03, - 2DIAGNOSTIC, 68, -7.268130261176e-01, 5.874788507304e-06, 3.5508e-01, 2.4371e-03, - 2DIAGNOSTIC, 69, -7.268131723818e-01, 4.520055712418e-06, 3.5780e-01, 2.7161e-03, - 2DIAGNOSTIC, 70, -7.268131896466e-01, 3.181786350410e-06, 3.6022e-01, 2.4250e-03, - 2DIAGNOSTIC, 71, -7.268131976580e-01, 2.603618550465e-06, 3.6274e-01, 2.5210e-03, - 2DIAGNOSTIC, 72, -7.268132039861e-01, 1.972752754664e-06, 3.6524e-01, 2.5001e-03, - 2DIAGNOSTIC, 73, -7.268132081923e-01, 1.263803094727e-06, 3.6746e-01, 2.2202e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.595801091595e-01, 1.797693134862e+308, 4.3346e-01, 6.6000e-02, - 2DIAGNOSTIC, 2, -5.598933650003e-01, 1.797693134862e+308, 4.4455e-01, 1.1089e-02, - 2DIAGNOSTIC, 3, -5.602769418206e-01, 1.797693134862e+308, 4.5495e-01, 1.0401e-02, - 2DIAGNOSTIC, 4, -5.608028813673e-01, 1.797693134862e+308, 4.6535e-01, 1.0400e-02, - 2DIAGNOSTIC, 5, -5.610671532823e-01, 1.797693134862e+308, 4.7572e-01, 1.0363e-02, - 2DIAGNOSTIC, 6, -5.615205963557e-01, 1.797693134862e+308, 4.8611e-01, 1.0391e-02, - 2DIAGNOSTIC, 7, -5.619063114524e-01, 1.797693134862e+308, 5.0196e-01, 1.5853e-02, - 2DIAGNOSTIC, 8, -5.622891811412e-01, 1.797693134862e+308, 5.1264e-01, 1.0679e-02, - 2DIAGNOSTIC, 9, -5.625327331572e-01, 1.797693134862e+308, 5.2322e-01, 1.0579e-02, - 2DIAGNOSTIC, 10, -5.626891922696e-01, 3.788032963243e-04, 5.3846e-01, 1.5246e-02, - 2DIAGNOSTIC, 11, -5.627877398411e-01, 3.181752952000e-04, 5.4926e-01, 1.0798e-02, - 2DIAGNOSTIC, 12, -5.628894064074e-01, 2.566151006381e-04, 5.6008e-01, 1.0821e-02, - 2DIAGNOSTIC, 13, -5.630655397806e-01, 2.029173329693e-04, 5.7507e-01, 1.4990e-02, - 2DIAGNOSTIC, 14, -5.631515694366e-01, 1.606677884277e-04, 5.8688e-01, 1.1809e-02, - 2DIAGNOSTIC, 15, -5.632200929700e-01, 1.206699124822e-04, 5.9787e-01, 1.0987e-02, - 2DIAGNOSTIC, 16, -5.632884331636e-01, 9.120757244598e-05, 6.0830e-01, 1.0428e-02, - 2DIAGNOSTIC, 17, -5.634239770940e-01, 7.227484603115e-05, 6.1887e-01, 1.0568e-02, - 2DIAGNOSTIC, 18, -5.635968386331e-01, 6.430155550417e-05, 6.3748e-01, 1.8614e-02, - 2DIAGNOSTIC, 19, -5.636372534858e-01, 5.876616480919e-05, 6.5003e-01, 1.2552e-02, - 2DIAGNOSTIC, 20, -5.636404046703e-01, 5.258293365891e-05, 6.6308e-01, 1.3052e-02, - 2DIAGNOSTIC, 21, -5.636572346635e-01, 4.506313829393e-05, 6.7698e-01, 1.3898e-02, - 2DIAGNOSTIC, 22, -5.636765830409e-01, 3.680798939855e-05, 6.9324e-01, 1.6255e-02, - 2DIAGNOSTIC, 23, -5.636832366988e-01, 2.988341141569e-05, 7.0641e-01, 1.3171e-02, - 2DIAGNOSTIC, 24, -5.636804546757e-01, 2.261951349984e-05, 7.1935e-01, 1.2946e-02, - 2DIAGNOSTIC, 25, -5.636768937075e-01, 1.530615756093e-05, 7.3144e-01, 1.2084e-02, - 2DIAGNOSTIC, 26, -5.636751693358e-01, 8.505283882430e-06, 7.4476e-01, 1.3322e-02, - 2DIAGNOSTIC, 27, -5.636747564482e-01, 3.960520480448e-06, 7.5695e-01, 1.2193e-02, - 2DIAGNOSTIC, 28, -5.636840144274e-01, 2.744507966272e-06, 7.6856e-01, 1.1608e-02, - 2DIAGNOSTIC, 29, -5.636993652875e-01, 2.434923896767e-06, 7.7966e-01, 1.1100e-02, - 2DIAGNOSTIC, 30, -5.637333030126e-01, 2.637348694753e-06, 7.9181e-01, 1.2151e-02, - 2DIAGNOSTIC, 31, -5.637742227727e-01, 3.600262710110e-06, 8.0288e-01, 1.1069e-02, - 2DIAGNOSTIC, 32, -5.638496323581e-01, 5.741587737064e-06, 8.1387e-01, 1.0994e-02, - 2DIAGNOSTIC, 33, -5.644949166580e-01, 1.725752209999e-05, 8.2775e-01, 1.3875e-02, - 2DIAGNOSTIC, 34, -5.645630143879e-01, 2.726159425737e-05, 8.3857e-01, 1.0825e-02, - 2DIAGNOSTIC, 35, -5.647110764788e-01, 3.636852479582e-05, 8.5520e-01, 1.6629e-02, - 2DIAGNOSTIC, 36, -5.648511396364e-01, 4.362522958744e-05, 8.6749e-01, 1.2283e-02, - 2DIAGNOSTIC, 37, -5.648785100696e-01, 4.672759765218e-05, 8.7828e-01, 1.0790e-02, - 2DIAGNOSTIC, 38, -5.648877404789e-01, 4.544462883537e-05, 8.8907e-01, 1.0794e-02, - 2DIAGNOSTIC, 39, -5.649256710989e-01, 4.065283744868e-05, 8.9971e-01, 1.0636e-02, - 2DIAGNOSTIC, 40, -5.649989636762e-01, 3.373670491821e-05, 9.1159e-01, 1.1889e-02, - 2DIAGNOSTIC, 41, -5.651275041751e-01, 2.612855719170e-05, 9.2209e-01, 1.0497e-02, - 2DIAGNOSTIC, 42, -5.652919108917e-01, 1.912233273044e-05, 9.3410e-01, 1.2013e-02, - 2DIAGNOSTIC, 43, -5.653243959972e-01, 1.863807551451e-05, 9.4828e-01, 1.4174e-02, - 2DIAGNOSTIC, 44, -5.653460672626e-01, 1.749549705303e-05, 9.5840e-01, 1.0121e-02, - 2DIAGNOSTIC, 45, -5.653905713345e-01, 1.692554384468e-05, 9.6999e-01, 1.1589e-02, - 2DIAGNOSTIC, 46, -5.654888282065e-01, 1.740243901467e-05, 9.8010e-01, 1.0114e-02, - 2DIAGNOSTIC, 47, -5.656469365102e-01, 1.820770175388e-05, 9.9339e-01, 1.3289e-02, - 2DIAGNOSTIC, 48, -5.657576758103e-01, 1.854022829695e-05, 1.0063e+00, 1.2953e-02, - 2DIAGNOSTIC, 49, -5.658562015741e-01, 1.856932419867e-05, 1.0176e+00, 1.1305e-02, - 2DIAGNOSTIC, 50, -5.658632960564e-01, 1.767752391025e-05, 1.0290e+00, 1.1334e-02, - 2DIAGNOSTIC, 51, -5.658602665676e-01, 1.639216103693e-05, 1.0405e+00, 1.1484e-02, - 2DIAGNOSTIC, 52, -5.658750375204e-01, 1.536545594989e-05, 1.0518e+00, 1.1343e-02, - 2DIAGNOSTIC, 53, -5.658786429490e-01, 1.328954253650e-05, 1.0631e+00, 1.1255e-02, - 2DIAGNOSTIC, 54, -5.658581434195e-01, 1.008762602884e-05, 1.0744e+00, 1.1328e-02, - 2DIAGNOSTIC, 55, -5.658705396016e-01, 6.623846525184e-06, 1.0861e+00, 1.1728e-02, - 2DIAGNOSTIC, 56, -5.658504877684e-01, 3.388032970477e-06, 1.0965e+00, 1.0420e-02, - 2DIAGNOSTIC, 57, -5.658563009635e-01, 1.429358635376e-06, 1.1085e+00, 1.2000e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.740378765121e-01, 1.797693134862e+308, 1.2850e+00, 1.7644e-01, - Elapsed time (stage 0): 1.3143e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -1.035658852149e+00, 1.797693134862e+308, 3.5966e-02, 3.5965e-02, - 2DIAGNOSTIC, 2, -1.038060033757e+00, 1.797693134862e+308, 3.7203e-02, 1.2369e-03, - 2DIAGNOSTIC, 3, -1.041995554734e+00, 1.797693134862e+308, 3.8633e-02, 1.4300e-03, - 2DIAGNOSTIC, 4, -1.044611475694e+00, 1.797693134862e+308, 3.9839e-02, 1.2062e-03, - 2DIAGNOSTIC, 5, -1.047004351117e+00, 1.797693134862e+308, 4.1280e-02, 1.4410e-03, - 2DIAGNOSTIC, 6, -1.047593603736e+00, 1.797693134862e+308, 4.2490e-02, 1.2100e-03, - 2DIAGNOSTIC, 7, -1.051442935778e+00, 1.797693134862e+308, 4.3971e-02, 1.4811e-03, - 2DIAGNOSTIC, 8, -1.058255801964e+00, 1.797693134862e+308, 4.5369e-02, 1.3978e-03, - 2DIAGNOSTIC, 9, -1.060738110643e+00, 1.797693134862e+308, 4.6526e-02, 1.1570e-03, - 2DIAGNOSTIC, 10, -1.061580995808e+00, 1.641109293248e-03, 4.8026e-02, 1.5001e-03, - 2DIAGNOSTIC, 11, -1.064308819999e+00, 1.493180357879e-03, 5.0102e-02, 2.0759e-03, - 2DIAGNOSTIC, 12, -1.066902128648e+00, 1.345318267883e-03, 5.2097e-02, 1.9948e-03, - 2DIAGNOSTIC, 13, -1.067264556350e+00, 1.184434739887e-03, 5.3384e-02, 1.2870e-03, - 2DIAGNOSTIC, 14, -1.069757218532e+00, 1.037740638301e-03, 5.4629e-02, 1.2448e-03, - 2DIAGNOSTIC, 15, -1.075556538114e+00, 9.646910362846e-04, 5.6431e-02, 1.8022e-03, - 2DIAGNOSTIC, 16, -1.076867763710e+00, 8.416884115950e-04, 5.7913e-02, 1.4820e-03, - 2DIAGNOSTIC, 17, -1.076570547903e+00, 7.102288266317e-04, 5.9788e-02, 1.8749e-03, - 2DIAGNOSTIC, 18, -1.077476196939e+00, 6.444536367279e-04, 6.1070e-02, 1.2820e-03, - 2DIAGNOSTIC, 19, -1.077120279020e+00, 5.559213178007e-04, 6.2400e-02, 1.3301e-03, - 2DIAGNOSTIC, 20, -1.076622228686e+00, 4.277150939037e-04, 6.3726e-02, 1.3258e-03, - 2DIAGNOSTIC, 21, -1.078009002117e+00, 3.240595924268e-04, 6.5244e-02, 1.5180e-03, - 2DIAGNOSTIC, 22, -1.082230385245e+00, 2.834144313140e-04, 6.7182e-02, 1.9381e-03, - 2DIAGNOSTIC, 23, -1.081850985230e+00, 2.185928372988e-04, 6.8806e-02, 1.6241e-03, - 2DIAGNOSTIC, 24, -1.080882103898e+00, 1.551409941847e-04, 7.0142e-02, 1.3359e-03, - 2DIAGNOSTIC, 25, -1.080147698838e+00, 1.372388601547e-04, 7.1686e-02, 1.5440e-03, - 2DIAGNOSTIC, 26, -1.080625380739e+00, 1.260953518814e-04, 7.3006e-02, 1.3201e-03, - 2DIAGNOSTIC, 27, -1.080049504449e+00, 9.391692265860e-05, 7.4522e-02, 1.5159e-03, - 2DIAGNOSTIC, 28, -1.081170587177e+00, 7.491001026991e-05, 7.5862e-02, 1.3402e-03, - 2DIAGNOSTIC, 29, -1.081026909996e+00, 4.649925273203e-05, 7.7545e-02, 1.6830e-03, - 2DIAGNOSTIC, 30, -1.088011657304e+00, 7.351314490895e-05, 7.9517e-02, 1.9720e-03, - 2DIAGNOSTIC, 31, -1.110184174886e+00, 2.910671201503e-04, 8.1699e-02, 2.1820e-03, - 2DIAGNOSTIC, 32, -1.123052180087e+00, 6.039898029844e-04, 8.4438e-02, 2.7390e-03, - 2DIAGNOSTIC, 33, -1.132673469184e+00, 9.141079570254e-04, 8.6173e-02, 1.7350e-03, - 2DIAGNOSTIC, 34, -1.139194910579e+00, 1.163234127421e-03, 8.7720e-02, 1.5471e-03, - 2DIAGNOSTIC, 35, -1.145563485842e+00, 1.328840135144e-03, 9.0028e-02, 2.3081e-03, - 2DIAGNOSTIC, 36, -1.147046571763e+00, 1.370227565474e-03, 9.1601e-02, 1.5728e-03, - 2DIAGNOSTIC, 37, -1.149215752823e+00, 1.289578175073e-03, 9.2951e-02, 1.3499e-03, - 2DIAGNOSTIC, 38, -1.152477650277e+00, 1.123003621885e-03, 9.4414e-02, 1.4629e-03, - 2DIAGNOSTIC, 39, -1.156143292867e+00, 8.827671748254e-04, 9.6337e-02, 1.9228e-03, - 2DIAGNOSTIC, 40, -1.159145188618e+00, 6.334272299473e-04, 9.8087e-02, 1.7500e-03, - 2DIAGNOSTIC, 41, -1.161775271006e+00, 4.935649407956e-04, 9.9836e-02, 1.7490e-03, - 2DIAGNOSTIC, 42, -1.166511745977e+00, 4.223158435643e-04, 1.0181e-01, 1.9748e-03, - 2DIAGNOSTIC, 43, -1.167890603993e+00, 3.796769114978e-04, 1.0355e-01, 1.7409e-03, - 2DIAGNOSTIC, 44, -1.171740296843e+00, 3.632752923698e-04, 1.0555e-01, 1.9979e-03, - 2DIAGNOSTIC, 45, -1.182345921318e+00, 4.105243782506e-04, 1.0719e-01, 1.6429e-03, - 2DIAGNOSTIC, 46, -1.198602157161e+00, 5.146034967726e-04, 1.0917e-01, 1.9779e-03, - 2DIAGNOSTIC, 47, -1.203330676131e+00, 6.005943189730e-04, 1.1099e-01, 1.8232e-03, - 2DIAGNOSTIC, 48, -1.205325852713e+00, 6.543671422207e-04, 1.1262e-01, 1.6258e-03, - 2DIAGNOSTIC, 49, -1.211550609792e+00, 6.960355295740e-04, 1.1419e-01, 1.5728e-03, - 2DIAGNOSTIC, 50, -1.217249358760e+00, 7.122950748691e-04, 1.1559e-01, 1.4021e-03, - 2DIAGNOSTIC, 51, -1.220069270775e+00, 6.848745661874e-04, 1.1804e-01, 2.4450e-03, - 2DIAGNOSTIC, 52, -1.220426282529e+00, 6.187504739681e-04, 1.1936e-01, 1.3170e-03, - 2DIAGNOSTIC, 53, -1.220971482790e+00, 5.069833104071e-04, 1.2065e-01, 1.2939e-03, - 2DIAGNOSTIC, 54, -1.221471129604e+00, 3.711378749908e-04, 1.2195e-01, 1.2960e-03, - 2DIAGNOSTIC, 55, -1.221788342166e+00, 2.533515398316e-04, 1.2327e-01, 1.3220e-03, - 2DIAGNOSTIC, 56, -1.222054418980e+00, 1.905269996823e-04, 1.2460e-01, 1.3349e-03, - 2DIAGNOSTIC, 57, -1.222637866048e+00, 1.359475546685e-04, 1.2612e-01, 1.5218e-03, - 2DIAGNOSTIC, 58, -1.223115727473e+00, 8.085502538873e-05, 1.2902e-01, 2.8980e-03, - 2DIAGNOSTIC, 59, -1.223123160806e+00, 4.620442553851e-05, 1.3050e-01, 1.4791e-03, - 2DIAGNOSTIC, 60, -1.223161946024e+00, 3.231170240376e-05, 1.3256e-01, 2.0611e-03, - 2DIAGNOSTIC, 61, -1.223214468967e+00, 2.774874658115e-05, 1.3447e-01, 1.9050e-03, - 2DIAGNOSTIC, 62, -1.223278774484e+00, 2.237045799281e-05, 1.3621e-01, 1.7428e-03, - 2DIAGNOSTIC, 63, -1.223351592913e+00, 1.747813022908e-05, 1.3766e-01, 1.4451e-03, - 2DIAGNOSTIC, 64, -1.223422659689e+00, 1.336619800198e-05, 1.3909e-01, 1.4291e-03, - 2DIAGNOSTIC, 65, -1.223494425021e+00, 9.681471059304e-06, 1.4078e-01, 1.6911e-03, - 2DIAGNOSTIC, 66, -1.223607568159e+00, 6.629536056717e-06, 1.4269e-01, 1.9150e-03, - 2DIAGNOSTIC, 67, -1.223630400823e+00, 5.292753441841e-06, 1.4538e-01, 2.6920e-03, - 2DIAGNOSTIC, 68, -1.223634121814e+00, 5.312383324216e-06, 1.4771e-01, 2.3260e-03, - 2DIAGNOSTIC, 69, -1.223640927914e+00, 4.922876846506e-06, 1.5002e-01, 2.3119e-03, - 2DIAGNOSTIC, 70, -1.223649458096e+00, 4.283075309697e-06, 1.5235e-01, 2.3270e-03, - 2DIAGNOSTIC, 71, -1.223671291331e+00, 3.550228720735e-06, 1.5473e-01, 2.3861e-03, - 2DIAGNOSTIC, 72, -1.223680049153e+00, 2.791436581412e-06, 1.5632e-01, 1.5891e-03, - 2DIAGNOSTIC, 73, -1.223681667395e+00, 2.087187840205e-06, 1.5790e-01, 1.5731e-03, - 2DIAGNOSTIC, 74, -1.223684420863e+00, 1.494586767894e-06, 1.5950e-01, 1.6060e-03, - 2DIAGNOSTIC, 75, -1.223692679272e+00, 1.073659276901e-06, 1.6248e-01, 2.9740e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.026384477455e-01, 1.797693134862e+308, 2.0723e-01, 4.4750e-02, - 2DIAGNOSTIC, 2, -8.022706433001e-01, 1.797693134862e+308, 2.1013e-01, 2.9049e-03, - 2DIAGNOSTIC, 3, -8.034347136763e-01, 1.797693134862e+308, 2.1304e-01, 2.9089e-03, - 2DIAGNOSTIC, 4, -8.050243066335e-01, 1.797693134862e+308, 2.1555e-01, 2.5141e-03, - 2DIAGNOSTIC, 5, -8.088190108147e-01, 1.797693134862e+308, 2.1769e-01, 2.1369e-03, - 2DIAGNOSTIC, 6, -8.108073131864e-01, 1.797693134862e+308, 2.1987e-01, 2.1832e-03, - 2DIAGNOSTIC, 7, -8.144209355757e-01, 1.797693134862e+308, 2.2240e-01, 2.5251e-03, - 2DIAGNOSTIC, 8, -8.178683264250e-01, 1.797693134862e+308, 2.2490e-01, 2.5022e-03, - 2DIAGNOSTIC, 9, -8.195371298117e-01, 1.797693134862e+308, 2.2806e-01, 3.1540e-03, - 2DIAGNOSTIC, 10, -8.208190620381e-01, 1.690214806826e-03, 2.3413e-01, 6.0740e-03, - 2DIAGNOSTIC, 11, -8.207993227099e-01, 1.554333445592e-03, 2.3667e-01, 2.5399e-03, - 2DIAGNOSTIC, 12, -8.211534768508e-01, 1.302194309485e-03, 2.3940e-01, 2.7301e-03, - 2DIAGNOSTIC, 13, -8.217258757837e-01, 1.017701972838e-03, 2.4206e-01, 2.6641e-03, - 2DIAGNOSTIC, 14, -8.226466400630e-01, 7.425841027637e-04, 2.4467e-01, 2.6081e-03, - 2DIAGNOSTIC, 15, -8.237280851300e-01, 5.504285042980e-04, 2.4727e-01, 2.6011e-03, - 2DIAGNOSTIC, 16, -8.248460698060e-01, 3.988625098415e-04, 2.4977e-01, 2.5010e-03, - 2DIAGNOSTIC, 17, -8.259723303064e-01, 3.245192773720e-04, 2.5228e-01, 2.5101e-03, - 2DIAGNOSTIC, 18, -8.271758102178e-01, 3.177559184555e-04, 2.5514e-01, 2.8541e-03, - 2DIAGNOSTIC, 19, -8.275954028205e-01, 3.196684950715e-04, 2.5911e-01, 3.9701e-03, - 2DIAGNOSTIC, 20, -8.275798815215e-01, 3.140333038203e-04, 2.6165e-01, 2.5439e-03, - 2DIAGNOSTIC, 21, -8.278961443123e-01, 2.849153842418e-04, 2.6417e-01, 2.5139e-03, - 2DIAGNOSTIC, 22, -8.280955783703e-01, 2.404855702913e-04, 2.6705e-01, 2.8880e-03, - 2DIAGNOSTIC, 23, -8.281916571207e-01, 1.873449796103e-04, 2.7011e-01, 3.0580e-03, - 2DIAGNOSTIC, 24, -8.282843278036e-01, 1.358226421099e-04, 2.7602e-01, 5.9052e-03, - 2DIAGNOSTIC, 25, -8.282609163960e-01, 9.052468869554e-05, 2.7865e-01, 2.6309e-03, - 2DIAGNOSTIC, 26, -8.282715627696e-01, 5.522220274905e-05, 2.8114e-01, 2.4891e-03, - 2DIAGNOSTIC, 27, -8.282889560429e-01, 3.172163174905e-05, 2.8363e-01, 2.4900e-03, - 2DIAGNOSTIC, 28, -8.283166593797e-01, 2.213704779503e-05, 2.8614e-01, 2.5160e-03, - 2DIAGNOSTIC, 29, -8.283853406316e-01, 1.713071822380e-05, 2.8868e-01, 2.5411e-03, - 2DIAGNOSTIC, 30, -8.284470790669e-01, 1.140539752736e-05, 2.9147e-01, 2.7812e-03, - 2DIAGNOSTIC, 31, -8.284981533411e-01, 9.133950456590e-06, 2.9385e-01, 2.3870e-03, - 2DIAGNOSTIC, 32, -8.285441618562e-01, 8.869743079912e-06, 2.9659e-01, 2.7370e-03, - 2DIAGNOSTIC, 33, -8.286136762390e-01, 9.577088069562e-06, 2.9899e-01, 2.3971e-03, - 2DIAGNOSTIC, 34, -8.286879714629e-01, 1.111343405767e-05, 3.0140e-01, 2.4121e-03, - 2DIAGNOSTIC, 35, -8.288541196428e-01, 1.298830460567e-05, 3.0388e-01, 2.4831e-03, - 2DIAGNOSTIC, 36, -8.291531433752e-01, 1.655400536638e-05, 3.0663e-01, 2.7511e-03, - 2DIAGNOSTIC, 37, -8.296845144841e-01, 2.350767153093e-05, 3.0967e-01, 3.0351e-03, - 2DIAGNOSTIC, 38, -8.298501024923e-01, 2.959425740123e-05, 3.1205e-01, 2.3851e-03, - 2DIAGNOSTIC, 39, -8.299401712422e-01, 3.406767852402e-05, 3.1502e-01, 2.9709e-03, - 2DIAGNOSTIC, 40, -8.300285405593e-01, 3.647668083392e-05, 3.1773e-01, 2.7049e-03, - 2DIAGNOSTIC, 41, -8.300504550079e-01, 3.593017405371e-05, 3.2040e-01, 2.6691e-03, - 2DIAGNOSTIC, 42, -8.300558219220e-01, 3.241751416312e-05, 3.2280e-01, 2.4002e-03, - 2DIAGNOSTIC, 43, -8.300786773369e-01, 2.679653192980e-05, 3.2517e-01, 2.3739e-03, - 2DIAGNOSTIC, 44, -8.301403588675e-01, 2.004709116214e-05, 3.2753e-01, 2.3601e-03, - 2DIAGNOSTIC, 45, -8.302026352015e-01, 1.348234665018e-05, 3.3018e-01, 2.6510e-03, - 2DIAGNOSTIC, 46, -8.303192083526e-01, 9.000895893334e-06, 3.3287e-01, 2.6870e-03, - 2DIAGNOSTIC, 47, -8.303476151679e-01, 7.994251938041e-06, 3.3618e-01, 3.3050e-03, - 2DIAGNOSTIC, 48, -8.304133614969e-01, 7.989974220638e-06, 3.3916e-01, 2.9879e-03, - 2DIAGNOSTIC, 49, -8.304405752675e-01, 8.087129180490e-06, 3.4155e-01, 2.3880e-03, - 2DIAGNOSTIC, 50, -8.304608012496e-01, 8.206683469261e-06, 3.4423e-01, 2.6801e-03, - 2DIAGNOSTIC, 51, -8.304880149421e-01, 7.925634870162e-06, 3.4688e-01, 2.6500e-03, - 2DIAGNOSTIC, 52, -8.304642043944e-01, 6.832262458113e-06, 3.5459e-01, 7.7050e-03, - 2DIAGNOSTIC, 53, -8.304642043847e-01, 5.338392892670e-06, 3.6236e-01, 7.7751e-03, - 2DIAGNOSTIC, 54, -8.304642043847e-01, 3.835846785916e-06, 3.6540e-01, 3.0379e-03, - 2DIAGNOSTIC, 55, -8.304642043847e-01, 2.449022271582e-06, 3.6849e-01, 3.0880e-03, - 2DIAGNOSTIC, 56, -8.304642043847e-01, 1.649573052338e-06, 3.7123e-01, 2.7421e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.144517357451e-01, 1.797693134862e+308, 4.3417e-01, 6.2945e-02, - 2DIAGNOSTIC, 2, -6.149959438196e-01, 1.797693134862e+308, 4.4731e-01, 1.3133e-02, - 2DIAGNOSTIC, 3, -6.158067440281e-01, 1.797693134862e+308, 4.5989e-01, 1.2582e-02, - 2DIAGNOSTIC, 4, -6.168611352897e-01, 1.797693134862e+308, 4.7259e-01, 1.2697e-02, - 2DIAGNOSTIC, 5, -6.179676052982e-01, 1.797693134862e+308, 4.8535e-01, 1.2767e-02, - 2DIAGNOSTIC, 6, -6.190017808675e-01, 1.797693134862e+308, 4.9838e-01, 1.3025e-02, - 2DIAGNOSTIC, 7, -6.196419178736e-01, 1.797693134862e+308, 5.1583e-01, 1.7452e-02, - 2DIAGNOSTIC, 8, -6.197664603990e-01, 1.797693134862e+308, 5.2836e-01, 1.2532e-02, - 2DIAGNOSTIC, 9, -6.198385293595e-01, 1.797693134862e+308, 5.4076e-01, 1.2397e-02, - 2DIAGNOSTIC, 10, -6.199279821747e-01, 6.451818416637e-04, 5.5441e-01, 1.3652e-02, - 2DIAGNOSTIC, 11, -6.199592778241e-01, 4.878385687778e-04, 5.7216e-01, 1.7751e-02, - 2DIAGNOSTIC, 12, -6.199730310244e-01, 3.344599061489e-04, 5.8622e-01, 1.4057e-02, - 2DIAGNOSTIC, 13, -6.199794931579e-01, 2.035662322272e-04, 5.9854e-01, 1.2317e-02, - 2DIAGNOSTIC, 14, -6.200111481480e-01, 1.084650011557e-04, 6.1131e-01, 1.2770e-02, - 2DIAGNOSTIC, 15, -6.200947047536e-01, 5.214725904415e-05, 6.2911e-01, 1.7799e-02, - 2DIAGNOSTIC, 16, -6.201524906785e-01, 2.912121952868e-05, 6.4366e-01, 1.4555e-02, - 2DIAGNOSTIC, 17, -6.202597814081e-01, 2.646093801819e-05, 6.5797e-01, 1.4306e-02, - 2DIAGNOSTIC, 18, -6.203712812360e-01, 2.780311219354e-05, 6.7046e-01, 1.2490e-02, - 2DIAGNOSTIC, 19, -6.205003857052e-01, 3.136168967594e-05, 6.8315e-01, 1.2690e-02, - 2DIAGNOSTIC, 20, -6.205833812325e-01, 3.569592342526e-05, 6.9571e-01, 1.2568e-02, - 2DIAGNOSTIC, 21, -6.206864726660e-01, 3.936657094593e-05, 7.1169e-01, 1.5973e-02, - 2DIAGNOSTIC, 22, -6.207585251141e-01, 4.094403581478e-05, 7.2961e-01, 1.7921e-02, - 2DIAGNOSTIC, 23, -6.207878940410e-01, 3.938027673424e-05, 7.4256e-01, 1.2954e-02, - 2DIAGNOSTIC, 24, -6.208667268534e-01, 3.647644784059e-05, 7.5577e-01, 1.3208e-02, - 2DIAGNOSTIC, 25, -6.209082320314e-01, 3.277237901743e-05, 7.6894e-01, 1.3169e-02, - 2DIAGNOSTIC, 26, -6.209882911950e-01, 2.879406901672e-05, 7.8154e-01, 1.2605e-02, - 2DIAGNOSTIC, 27, -6.211535488324e-01, 2.710292100493e-05, 7.9931e-01, 1.7771e-02, - 2DIAGNOSTIC, 28, -6.211801068203e-01, 2.526523547842e-05, 8.1379e-01, 1.4471e-02, - 2DIAGNOSTIC, 29, -6.212303524464e-01, 2.412840991958e-05, 8.2821e-01, 1.4428e-02, - 2DIAGNOSTIC, 30, -6.213642201070e-01, 2.418516574788e-05, 8.4225e-01, 1.4037e-02, - 2DIAGNOSTIC, 31, -6.213939507986e-01, 2.393551550581e-05, 8.5633e-01, 1.4079e-02, - 2DIAGNOSTIC, 32, -6.214165467216e-01, 2.287560548287e-05, 8.6867e-01, 1.2342e-02, - 2DIAGNOSTIC, 33, -6.214346353618e-01, 2.046691315266e-05, 8.8127e-01, 1.2599e-02, - 2DIAGNOSTIC, 34, -6.214458574028e-01, 1.758041888134e-05, 8.9379e-01, 1.2521e-02, - 2DIAGNOSTIC, 35, -6.214696712125e-01, 1.410525109271e-05, 9.0951e-01, 1.5719e-02, - 2DIAGNOSTIC, 36, -6.215187151794e-01, 1.115001867489e-05, 9.3191e-01, 2.2397e-02, - 2DIAGNOSTIC, 37, -6.215195559962e-01, 9.442552366283e-06, 9.4378e-01, 1.1872e-02, - 2DIAGNOSTIC, 38, -6.215212241655e-01, 7.362689786867e-06, 9.5568e-01, 1.1897e-02, - 2DIAGNOSTIC, 39, -6.215235566657e-01, 5.354236832237e-06, 9.6797e-01, 1.2293e-02, - 2DIAGNOSTIC, 40, -6.215265304549e-01, 4.570855416362e-06, 9.8117e-01, 1.3197e-02, - 2DIAGNOSTIC, 41, -6.215291059603e-01, 3.813396009002e-06, 9.9383e-01, 1.2660e-02, - 2DIAGNOSTIC, 42, -6.215345381875e-01, 3.105853532297e-06, 1.0077e+00, 1.3866e-02, - 2DIAGNOSTIC, 43, -6.215440416012e-01, 2.508040336687e-06, 1.0243e+00, 1.6559e-02, - 2DIAGNOSTIC, 44, -6.215443234379e-01, 1.885269875431e-06, 1.0362e+00, 1.1956e-02, - 2DIAGNOSTIC, 45, -6.215445931888e-01, 1.411784850792e-06, 1.0756e+00, 3.9406e-02, - 2DIAGNOSTIC, 46, -6.215445931849e-01, 1.381205176874e-06, 1.1161e+00, 4.0444e-02, - 2DIAGNOSTIC, 47, -6.215445931849e-01, 1.293254759969e-06, 1.1305e+00, 1.4456e-02, - 2DIAGNOSTIC, 48, -6.215445931849e-01, 1.164397104372e-06, 1.1466e+00, 1.6123e-02, - 2DIAGNOSTIC, 49, -6.215445931849e-01, 1.014601485900e-06, 1.1615e+00, 1.4846e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.032260086856e-01, 1.797693134862e+308, 1.3628e+00, 2.0128e-01, - Elapsed time (stage 1): 1.3836e+00 - - -Total elapsed time: 2.6990e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:45:45 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 45 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 77 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 90.05% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 90.05% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[14038 21190 23780 9438 7577 645 0 18404 16308 10340 13019 1769 - 19365 1684 5669 1924 2931 228 234 470 283 578 2146 1019 - 234 2798 1750 1432 768 750 784 249 433 236 506 796 - 201 498 217 537 496 525 277 471 197] -[147499 125247 121666 60175 65082 27201 22239 36821 40017 48802 - 42437 41809 25340 28900 23026 23492 17515 16530 13434 16597 - 8815 10699 9991 8629 8636 10144 8862 9331 2834 6300 - 6374 7945 6116 7074 5839 5985 6074 5207 5391 7218 - 5942 5344 4605 5823 2165] -[ 261 202 4474 201 412 2783 16065 3950 440 0 0 697 - 16624 417 688 885 433 1920 1286 0 200 507 0 22278 - 633 13867 0 0 485 0 212 36357 14236 3811 1192 0 - 17231 2102 6717 1658 244 0 485 9609 701] -[ 25533 9164 3084 9961 9704 41882 6837 46045 7929 2643 - 10521 22084 3618 3818 6151 7720 16111 37340 9772 2099 - 6777 6519 5192 120878 11629 152835 9219 11058 2583 5468 - 6447 7456 143268 6279 20310 5967 3320 49267 5152 46235 - 21084 10420 6269 2187 12103] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:57:17 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 00:57:22 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:11 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:11 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:22 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:26 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC001 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:01:39 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:02:04 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:03:56 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:03:57 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:05:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:05:21 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5600f804cd20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.5131, 116.418, -134.291] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f7ec3730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4f81d17010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5600f8050020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.749, 56.4089, -118.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f80560c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4f7e658010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5600f8066840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.5131, 116.418, -134.291] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f8052890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4f79984010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5600f806a3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.749, 56.4089, -118.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f8059130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4f762c5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.542870470039e-01, 1.797693134862e+308, 2.2696e-01, 2.2696e-01, - 2DIAGNOSTIC, 2, -5.551591374351e-01, 1.797693134862e+308, 2.2828e-01, 1.3220e-03, - 2DIAGNOSTIC, 3, -5.582031995662e-01, 1.797693134862e+308, 2.2951e-01, 1.2290e-03, - 2DIAGNOSTIC, 4, -5.609258788583e-01, 1.797693134862e+308, 2.3066e-01, 1.1511e-03, - 2DIAGNOSTIC, 5, -5.625864910145e-01, 1.797693134862e+308, 2.3213e-01, 1.4670e-03, - 2DIAGNOSTIC, 6, -5.637661434345e-01, 1.797693134862e+308, 2.3357e-01, 1.4429e-03, - 2DIAGNOSTIC, 7, -5.649797919651e-01, 1.797693134862e+308, 2.3487e-01, 1.2989e-03, - 2DIAGNOSTIC, 8, -5.675111377196e-01, 1.797693134862e+308, 2.3619e-01, 1.3220e-03, - 2DIAGNOSTIC, 9, -5.949152079192e-01, 1.797693134862e+308, 2.3785e-01, 1.6620e-03, - 2DIAGNOSTIC, 10, -6.159382037310e-01, 5.240270175826e-03, 2.3974e-01, 1.8852e-03, - 2DIAGNOSTIC, 11, -6.402624941624e-01, 7.262434482414e-03, 2.4176e-01, 2.0161e-03, - 2DIAGNOSTIC, 12, -6.463833954309e-01, 8.543566275168e-03, 2.4418e-01, 2.4271e-03, - 2DIAGNOSTIC, 13, -6.463312313949e-01, 8.964609706116e-03, 2.4583e-01, 1.6451e-03, - 2DIAGNOSTIC, 14, -6.481905387203e-01, 8.663921367717e-03, 2.4771e-01, 1.8799e-03, - 2DIAGNOSTIC, 15, -6.506787868402e-01, 7.735787946061e-03, 2.4972e-01, 2.0080e-03, - 2DIAGNOSTIC, 16, -6.517823569499e-01, 6.292112666002e-03, 2.5168e-01, 1.9650e-03, - 2DIAGNOSTIC, 17, -6.546707451814e-01, 4.580969935004e-03, 2.5429e-01, 2.6131e-03, - 2DIAGNOSTIC, 18, -6.554569760034e-01, 2.735894991881e-03, 2.5640e-01, 2.1050e-03, - 2DIAGNOSTIC, 19, -6.561347895697e-01, 1.533687915771e-03, 2.5819e-01, 1.7891e-03, - 2DIAGNOSTIC, 20, -6.580310440634e-01, 8.376494466133e-04, 2.6002e-01, 1.8291e-03, - 2DIAGNOSTIC, 21, -6.618331926091e-01, 7.515925527411e-04, 2.6165e-01, 1.6320e-03, - 2DIAGNOSTIC, 22, -6.804062627848e-01, 1.119967000515e-03, 2.6395e-01, 2.2960e-03, - 2DIAGNOSTIC, 23, -6.805172612667e-01, 1.340394499517e-03, 2.6538e-01, 1.4341e-03, - 2DIAGNOSTIC, 24, -6.824643516788e-01, 1.492842133616e-03, 2.6711e-01, 1.7259e-03, - 2DIAGNOSTIC, 25, -6.834474559453e-01, 1.559546459567e-03, 2.6889e-01, 1.7869e-03, - 2DIAGNOSTIC, 26, -6.830735468055e-01, 1.483807447206e-03, 2.7045e-01, 1.5621e-03, - 2DIAGNOSTIC, 27, -6.827329427987e-01, 1.313411222418e-03, 2.7203e-01, 1.5750e-03, - 2DIAGNOSTIC, 28, -6.831101629636e-01, 1.051664494469e-03, 2.7380e-01, 1.7710e-03, - 2DIAGNOSTIC, 29, -6.833915920335e-01, 7.290431984666e-04, 2.7536e-01, 1.5550e-03, - 2DIAGNOSTIC, 30, -6.830651571619e-01, 3.857300759211e-04, 2.7691e-01, 1.5502e-03, - 2DIAGNOSTIC, 31, -6.834420655286e-01, 8.334720494712e-05, 2.7864e-01, 1.7331e-03, - 2DIAGNOSTIC, 32, -6.854048782038e-01, 8.033450990406e-05, 2.8123e-01, 2.5940e-03, - 2DIAGNOSTIC, 33, -6.871175849136e-01, 9.308775372027e-05, 2.8272e-01, 1.4920e-03, - 2DIAGNOSTIC, 34, -6.879087709730e-01, 1.312712444469e-04, 2.8437e-01, 1.6479e-03, - 2DIAGNOSTIC, 35, -6.885655817637e-01, 1.761049440779e-04, 2.8618e-01, 1.8070e-03, - 2DIAGNOSTIC, 36, -6.902546724136e-01, 2.180993171340e-04, 2.8820e-01, 2.0161e-03, - 2DIAGNOSTIC, 37, -6.907064226691e-01, 2.373871603710e-04, 2.8987e-01, 1.6761e-03, - 2DIAGNOSTIC, 38, -6.912553026341e-01, 2.435282111104e-04, 2.9235e-01, 2.4800e-03, - 2DIAGNOSTIC, 39, -6.914732830335e-01, 2.323407217054e-04, 2.9406e-01, 1.7099e-03, - 2DIAGNOSTIC, 40, -6.912960351433e-01, 1.944964234811e-04, 2.9585e-01, 1.7860e-03, - 2DIAGNOSTIC, 41, -6.918639277683e-01, 1.498520997105e-04, 2.9824e-01, 2.3940e-03, - 2DIAGNOSTIC, 42, -6.915083665423e-01, 1.093882280002e-04, 2.9992e-01, 1.6761e-03, - 2DIAGNOSTIC, 43, -6.916362319316e-01, 7.942061847755e-05, 3.0156e-01, 1.6460e-03, - 2DIAGNOSTIC, 44, -6.912672369899e-01, 4.763099904968e-05, 3.0305e-01, 1.4842e-03, - 2DIAGNOSTIC, 45, -6.914709655691e-01, 2.092549374203e-05, 3.0563e-01, 2.5790e-03, - 2DIAGNOSTIC, 46, -6.915429426512e-01, 1.000337836275e-05, 3.0724e-01, 1.6119e-03, - 2DIAGNOSTIC, 47, -6.916097710273e-01, 3.312321126606e-06, 3.0888e-01, 1.6451e-03, - 2DIAGNOSTIC, 48, -6.919022565653e-01, 4.308957654558e-06, 3.1097e-01, 2.0900e-03, - 2DIAGNOSTIC, 49, -6.920618242478e-01, 8.299363888385e-06, 3.1263e-01, 1.6510e-03, - 2DIAGNOSTIC, 50, -6.921260708654e-01, 1.023381144749e-05, 3.1429e-01, 1.6611e-03, - 2DIAGNOSTIC, 51, -6.922573859892e-01, 1.717369512124e-05, 3.1618e-01, 1.8919e-03, - 2DIAGNOSTIC, 52, -6.915268315022e-01, 1.316040519252e-05, 3.1806e-01, 1.8790e-03, - 2DIAGNOSTIC, 53, -6.922667072856e-01, 1.543433758716e-05, 3.1970e-01, 1.6391e-03, - 2DIAGNOSTIC, 54, -7.061681633547e-01, 1.239486590985e-04, 3.2153e-01, 1.8320e-03, - 2DIAGNOSTIC, 55, -7.733974048639e-01, 7.398165870347e-04, 3.2346e-01, 1.9290e-03, - 2DIAGNOSTIC, 56, -8.257190991522e-01, 1.644502141127e-03, 3.2572e-01, 2.2628e-03, - 2DIAGNOSTIC, 57, -8.308570042005e-01, 2.387762354536e-03, 3.2764e-01, 1.9190e-03, - 2DIAGNOSTIC, 58, -8.358389247889e-01, 2.920020372670e-03, 3.2947e-01, 1.8260e-03, - 2DIAGNOSTIC, 59, -8.365621293359e-01, 3.158512269602e-03, 3.3154e-01, 2.0781e-03, - 2DIAGNOSTIC, 60, -8.375259552961e-01, 3.082945482603e-03, 3.3368e-01, 2.1338e-03, - 2DIAGNOSTIC, 61, -8.377774972853e-01, 2.711919901016e-03, 3.3552e-01, 1.8461e-03, - 2DIAGNOSTIC, 62, -8.373215105715e-01, 2.094158176683e-03, 3.3716e-01, 1.6379e-03, - 2DIAGNOSTIC, 63, -8.369224738020e-01, 1.309758083484e-03, 3.3870e-01, 1.5409e-03, - 2DIAGNOSTIC, 64, -8.359665318201e-01, 5.054949424255e-04, 3.4056e-01, 1.8580e-03, - 2DIAGNOSTIC, 65, -8.365672950445e-01, 1.052539508852e-04, 3.4236e-01, 1.8020e-03, - 2DIAGNOSTIC, 66, -8.375523687406e-01, 4.148420778402e-05, 3.4416e-01, 1.7979e-03, - 2DIAGNOSTIC, 67, -8.396652308388e-01, 1.960426657153e-05, 3.4577e-01, 1.6069e-03, - 2DIAGNOSTIC, 68, -8.529515160126e-01, 1.063609277914e-04, 3.4831e-01, 2.5480e-03, - 2DIAGNOSTIC, 69, -8.557756669347e-01, 1.987242730662e-04, 3.4993e-01, 1.6141e-03, - 2DIAGNOSTIC, 70, -8.573559081138e-01, 2.840610054970e-04, 3.5146e-01, 1.5340e-03, - 2DIAGNOSTIC, 71, -8.585026692646e-01, 3.481517260190e-04, 3.5300e-01, 1.5399e-03, - 2DIAGNOSTIC, 72, -8.649770631491e-01, 4.100759903472e-04, 3.5534e-01, 2.3389e-03, - 2DIAGNOSTIC, 73, -8.665995061090e-01, 4.354054685011e-04, 3.5687e-01, 1.5240e-03, - 2DIAGNOSTIC, 74, -8.668909493038e-01, 4.143274147133e-04, 3.5836e-01, 1.4930e-03, - 2DIAGNOSTIC, 75, -8.673057354780e-01, 3.610726615567e-04, 3.6002e-01, 1.6620e-03, - 2DIAGNOSTIC, 76, -8.681212530486e-01, 2.848643679198e-04, 3.6146e-01, 1.4410e-03, - 2DIAGNOSTIC, 77, -8.692809100400e-01, 1.982366752083e-04, 3.6358e-01, 2.1141e-03, - 2DIAGNOSTIC, 78, -8.704764400171e-01, 1.683214592192e-04, 3.6522e-01, 1.6410e-03, - 2DIAGNOSTIC, 79, -8.686337534261e-01, 1.283511187953e-04, 3.6687e-01, 1.6520e-03, - 2DIAGNOSTIC, 80, -8.768089455672e-01, 1.260766575696e-04, 3.6850e-01, 1.6339e-03, - 2DIAGNOSTIC, 81, -8.771169596057e-01, 1.168061740761e-04, 3.7015e-01, 1.6470e-03, - 2DIAGNOSTIC, 82, -8.809163212685e-01, 1.457301348594e-04, 3.7167e-01, 1.5171e-03, - 2DIAGNOSTIC, 83, -8.863382642146e-01, 1.930992154124e-04, 3.7350e-01, 1.8370e-03, - 2DIAGNOSTIC, 84, -9.088507232066e-01, 3.259231806863e-04, 3.7507e-01, 1.5690e-03, - 2DIAGNOSTIC, 85, -9.603553330000e-01, 6.576138000473e-04, 3.7678e-01, 1.7118e-03, - 2DIAGNOSTIC, 86, -9.909969625904e-01, 1.051584614045e-03, 3.7859e-01, 1.8070e-03, - 2DIAGNOSTIC, 87, -9.914194651643e-01, 1.339610169625e-03, 3.8052e-01, 1.9319e-03, - 2DIAGNOSTIC, 88, -9.981950855963e-01, 1.529569642385e-03, 3.8207e-01, 1.5421e-03, - 2DIAGNOSTIC, 89, -9.977193012177e-01, 1.554588944519e-03, 3.8347e-01, 1.4069e-03, - 2DIAGNOSTIC, 90, -1.002345812315e+00, 1.479641607986e-03, 3.8506e-01, 1.5891e-03, - 2DIAGNOSTIC, 91, -1.004565210230e+00, 1.273107360084e-03, 3.8694e-01, 1.8768e-03, - 2DIAGNOSTIC, 92, -1.007111731467e+00, 9.792043831519e-04, 3.8864e-01, 1.7021e-03, - 2DIAGNOSTIC, 93, -1.006333763763e+00, 6.197802949727e-04, 3.9002e-01, 1.3781e-03, - 2DIAGNOSTIC, 94, -1.006756816116e+00, 2.982199139432e-04, 3.9170e-01, 1.6861e-03, - 2DIAGNOSTIC, 95, -1.008119943018e+00, 1.618505065048e-04, 3.9323e-01, 1.5230e-03, - 2DIAGNOSTIC, 96, -1.009853714931e+00, 1.392146681717e-04, 3.9493e-01, 1.7002e-03, - 2DIAGNOSTIC, 97, -1.007941681191e+00, 9.733875754893e-05, 3.9816e-01, 3.2349e-03, - 2DIAGNOSTIC, 98, -1.008787191065e+00, 7.681393647377e-05, 3.9957e-01, 1.4040e-03, - 2DIAGNOSTIC, 99, -1.008135469123e+00, 4.490930063360e-05, 4.0104e-01, 1.4729e-03, - 2DIAGNOSTIC, 100, -1.009326769923e+00, 3.066597910253e-05, 4.0244e-01, 1.3959e-03, - 2DIAGNOSTIC, 101, -1.009571487116e+00, 2.234706258287e-05, 4.0405e-01, 1.6110e-03, - 2DIAGNOSTIC, 102, -1.009724931039e+00, 2.205375497411e-05, 4.0537e-01, 1.3242e-03, - 2DIAGNOSTIC, 103, -1.008996478230e+00, 1.450431724584e-05, 4.0670e-01, 1.3301e-03, - 2DIAGNOSTIC, 104, -1.009205042035e+00, 7.921400654037e-06, 4.0807e-01, 1.3719e-03, - 2DIAGNOSTIC, 105, -1.010380437877e+00, 9.232984820149e-06, 4.0945e-01, 1.3750e-03, - 2DIAGNOSTIC, 106, -1.010886271194e+00, 1.730967316462e-05, 4.1135e-01, 1.9019e-03, - 2DIAGNOSTIC, 107, -1.011004121207e+00, 1.747196984594e-05, 4.1337e-01, 2.0239e-03, - 2DIAGNOSTIC, 108, -1.011168752897e+00, 1.957711590721e-05, 4.1494e-01, 1.5650e-03, - 2DIAGNOSTIC, 109, -1.011370427540e+00, 1.819938177542e-05, 4.1637e-01, 1.4338e-03, - 2DIAGNOSTIC, 110, -1.013372448564e+00, 2.538835865801e-05, 4.1786e-01, 1.4839e-03, - 2DIAGNOSTIC, 111, -1.015931292372e+00, 3.876983688133e-05, 4.1993e-01, 2.0700e-03, - 2DIAGNOSTIC, 112, -1.016023006372e+00, 4.888838940675e-05, 4.2128e-01, 1.3552e-03, - 2DIAGNOSTIC, 113, -1.016060533141e+00, 5.214354920560e-05, 4.2288e-01, 1.5991e-03, - 2DIAGNOSTIC, 114, -1.016202838440e+00, 5.142226075982e-05, 4.2476e-01, 1.8780e-03, - 2DIAGNOSTIC, 115, -1.016332243484e+00, 4.961546201204e-05, 4.2621e-01, 1.4510e-03, - 2DIAGNOSTIC, 116, -1.016381923656e+00, 4.461789023205e-05, 4.2761e-01, 1.4050e-03, - 2DIAGNOSTIC, 117, -1.016447218263e+00, 3.605995951788e-05, 4.2915e-01, 1.5390e-03, - 2DIAGNOSTIC, 118, -1.016469557522e+00, 2.496142855262e-05, 4.3105e-01, 1.8978e-03, - 2DIAGNOSTIC, 119, -1.016494507258e+00, 1.230142085933e-05, 4.3252e-01, 1.4729e-03, - 2DIAGNOSTIC, 120, -1.016683092372e+00, 4.918266033360e-06, 4.3422e-01, 1.6911e-03, - 2DIAGNOSTIC, 121, -1.017950893625e+00, 8.266979790051e-06, 4.3587e-01, 1.6580e-03, - 2DIAGNOSTIC, 122, -1.017183948333e+00, 8.758458302813e-06, 4.3758e-01, 1.7071e-03, - 2DIAGNOSTIC, 123, -1.018218435933e+00, 1.156076082755e-05, 4.4277e-01, 5.1930e-03, - 2DIAGNOSTIC, 124, -1.018218431563e+00, 1.355687385521e-05, 4.4428e-01, 1.5109e-03, - 2DIAGNOSTIC, 125, -1.018218527999e+00, 1.456697780397e-05, 4.4559e-01, 1.3011e-03, - 2DIAGNOSTIC, 126, -1.018218691009e+00, 1.430398325657e-05, 4.4710e-01, 1.5140e-03, - 2DIAGNOSTIC, 127, -1.018218966477e+00, 1.288803006483e-05, 4.4843e-01, 1.3280e-03, - 2DIAGNOSTIC, 128, -1.018219431783e+00, 1.036288080082e-05, 4.4984e-01, 1.4079e-03, - 2DIAGNOSTIC, 129, -1.018220217156e+00, 6.962873585252e-06, 4.5133e-01, 1.4980e-03, - 2DIAGNOSTIC, 130, -1.018221543710e+00, 3.407406195114e-06, 4.5269e-01, 1.3530e-03, - 2DIAGNOSTIC, 131, -1.018223778824e+00, 3.028867042639e-06, 4.5417e-01, 1.4830e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.914815113364e-01, 1.797693134862e+308, 7.0719e-01, 2.5302e-01, - 2DIAGNOSTIC, 2, -8.910457929944e-01, 1.797693134862e+308, 7.0940e-01, 2.2111e-03, - 2DIAGNOSTIC, 3, -8.922840448763e-01, 1.797693134862e+308, 7.1147e-01, 2.0661e-03, - 2DIAGNOSTIC, 4, -8.936007482829e-01, 1.797693134862e+308, 7.1355e-01, 2.0781e-03, - 2DIAGNOSTIC, 5, -8.945820919261e-01, 1.797693134862e+308, 7.1555e-01, 2.0061e-03, - 2DIAGNOSTIC, 6, -8.952479694135e-01, 1.797693134862e+308, 7.1803e-01, 2.4781e-03, - 2DIAGNOSTIC, 7, -8.954573775974e-01, 1.797693134862e+308, 7.1994e-01, 1.9112e-03, - 2DIAGNOSTIC, 8, -8.970793551930e-01, 1.797693134862e+308, 7.2208e-01, 2.1398e-03, - 2DIAGNOSTIC, 9, -8.984467372141e-01, 1.797693134862e+308, 7.2482e-01, 2.7380e-03, - 2DIAGNOSTIC, 10, -9.001425979938e-01, 6.215070646621e-04, 7.2722e-01, 2.3980e-03, - 2DIAGNOSTIC, 11, -9.004771536709e-01, 6.059295973655e-04, 7.2960e-01, 2.3811e-03, - 2DIAGNOSTIC, 12, -9.007411901575e-01, 5.348243476703e-04, 7.3162e-01, 2.0261e-03, - 2DIAGNOSTIC, 13, -9.009518135648e-01, 4.614262802412e-04, 7.3366e-01, 2.0390e-03, - 2DIAGNOSTIC, 14, -9.026950915360e-01, 4.249914208951e-04, 7.3575e-01, 2.0909e-03, - 2DIAGNOSTIC, 15, -9.048076750063e-01, 4.187083115609e-04, 7.3844e-01, 2.6870e-03, - 2DIAGNOSTIC, 16, -9.052637464353e-01, 3.969626393259e-04, 7.4357e-01, 5.1310e-03, - 2DIAGNOSTIC, 17, -9.052643362402e-01, 3.459557380283e-04, 7.4572e-01, 2.1460e-03, - 2DIAGNOSTIC, 18, -9.052875704308e-01, 2.980663966852e-04, 7.4791e-01, 2.1961e-03, - 2DIAGNOSTIC, 19, -9.053218285349e-01, 2.499382049712e-04, 7.5007e-01, 2.1539e-03, - 2DIAGNOSTIC, 20, -9.053683588726e-01, 2.103760327385e-04, 7.5221e-01, 2.1439e-03, - 2DIAGNOSTIC, 21, -9.051882502624e-01, 1.575972736909e-04, 7.5441e-01, 2.2020e-03, - 2DIAGNOSTIC, 22, -9.052444456274e-01, 1.004480234986e-04, 7.5658e-01, 2.1620e-03, - 2DIAGNOSTIC, 23, -9.053013391153e-01, 4.242676242581e-05, 7.5874e-01, 2.1629e-03, - 2DIAGNOSTIC, 24, -9.053818584285e-01, 8.625116164403e-06, 7.6092e-01, 2.1789e-03, - 2DIAGNOSTIC, 25, -9.052609021441e-01, 1.829635786710e-06, 7.6311e-01, 2.1901e-03, - 2DIAGNOSTIC, 26, -9.054071913501e-01, 2.925602755562e-06, 7.6527e-01, 2.1651e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.654562500222e-01, 1.797693134862e+308, 1.0271e+00, 2.6182e-01, - 2DIAGNOSTIC, 2, -7.666995278344e-01, 1.797693134862e+308, 1.0405e+00, 1.3434e-02, - 2DIAGNOSTIC, 3, -7.676859972642e-01, 1.797693134862e+308, 1.0544e+00, 1.3854e-02, - 2DIAGNOSTIC, 4, -7.687384844232e-01, 1.797693134862e+308, 1.0677e+00, 1.3320e-02, - 2DIAGNOSTIC, 5, -7.699951874614e-01, 1.797693134862e+308, 1.0816e+00, 1.3920e-02, - 2DIAGNOSTIC, 6, -7.718736480107e-01, 1.797693134862e+308, 1.0978e+00, 1.6221e-02, - 2DIAGNOSTIC, 7, -7.747142587223e-01, 1.797693134862e+308, 1.1215e+00, 2.3656e-02, - 2DIAGNOSTIC, 8, -7.745231541223e-01, 1.797693134862e+308, 1.1347e+00, 1.3231e-02, - 2DIAGNOSTIC, 9, -7.747341281898e-01, 1.797693134862e+308, 1.1484e+00, 1.3671e-02, - 2DIAGNOSTIC, 10, -7.748857180415e-01, 9.008290822283e-04, 1.1622e+00, 1.3789e-02, - 2DIAGNOSTIC, 11, -7.750663103620e-01, 7.214097747634e-04, 1.1759e+00, 1.3702e-02, - 2DIAGNOSTIC, 12, -7.754144868986e-01, 5.549447266040e-04, 1.1895e+00, 1.3634e-02, - 2DIAGNOSTIC, 13, -7.758855108389e-01, 4.056740130387e-04, 1.2053e+00, 1.5755e-02, - 2DIAGNOSTIC, 14, -7.760531638012e-01, 2.738977330653e-04, 1.2211e+00, 1.5830e-02, - 2DIAGNOSTIC, 15, -7.768643846460e-01, 1.851929839150e-04, 1.2512e+00, 3.0047e-02, - 2DIAGNOSTIC, 16, -7.768906855245e-01, 1.323619391362e-04, 1.2674e+00, 1.6276e-02, - 2DIAGNOSTIC, 17, -7.768944159369e-01, 1.355904970783e-04, 1.2817e+00, 1.4273e-02, - 2DIAGNOSTIC, 18, -7.768765633987e-01, 1.218896678153e-04, 1.2959e+00, 1.4167e-02, - 2DIAGNOSTIC, 19, -7.768865470158e-01, 1.027213320391e-04, 1.3121e+00, 1.6257e-02, - 2DIAGNOSTIC, 20, -7.768738815810e-01, 7.849304371024e-05, 1.3253e+00, 1.3210e-02, - 2DIAGNOSTIC, 21, -7.769158471447e-01, 5.322623400442e-05, 1.3386e+00, 1.3211e-02, - 2DIAGNOSTIC, 22, -7.769434598740e-01, 3.171865239959e-05, 1.3519e+00, 1.3376e-02, - 2DIAGNOSTIC, 23, -7.770091472927e-01, 1.790687272812e-05, 1.3670e+00, 1.5118e-02, - 2DIAGNOSTIC, 24, -7.769847720862e-01, 5.529514580924e-06, 1.3807e+00, 1.3674e-02, - 2DIAGNOSTIC, 25, -7.769964377548e-01, 5.847063991225e-06, 1.3939e+00, 1.3215e-02, - 2DIAGNOSTIC, 26, -7.770711552167e-01, 7.129374505900e-06, 1.4092e+00, 1.5286e-02, - 2DIAGNOSTIC, 27, -7.771559272282e-01, 8.924703633797e-06, 1.4254e+00, 1.6194e-02, - 2DIAGNOSTIC, 28, -7.771508328071e-01, 9.531535570734e-06, 1.4399e+00, 1.4530e-02, - 2DIAGNOSTIC, 29, -7.772221067785e-01, 1.038018615027e-05, 1.4553e+00, 1.5381e-02, - 2DIAGNOSTIC, 30, -7.774199616483e-01, 1.254785779860e-05, 1.4767e+00, 2.1423e-02, - 2DIAGNOSTIC, 31, -7.774552468263e-01, 1.432053688089e-05, 1.4923e+00, 1.5570e-02, - 2DIAGNOSTIC, 32, -7.774140023181e-01, 1.455346111486e-05, 1.5106e+00, 1.8323e-02, - 2DIAGNOSTIC, 33, -7.774089225677e-01, 1.423098269526e-05, 1.5247e+00, 1.4100e-02, - 2DIAGNOSTIC, 34, -7.773973989203e-01, 1.228386744711e-05, 1.5390e+00, 1.4278e-02, - 2DIAGNOSTIC, 35, -7.774282334023e-01, 9.759562715282e-06, 1.5576e+00, 1.8551e-02, - 2DIAGNOSTIC, 36, -7.774345302531e-01, 7.322709850703e-06, 1.5751e+00, 1.7567e-02, - 2DIAGNOSTIC, 37, -7.774125293006e-01, 5.075074214940e-06, 1.5887e+00, 1.3590e-02, - 2DIAGNOSTIC, 38, -7.773918578640e-01, 2.319531639781e-06, 1.6017e+00, 1.2999e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.474893518770e-01, 1.797693134862e+308, 2.0927e+00, 4.9100e-01, - 2DIAGNOSTIC, 2, -6.483432069232e-01, 1.797693134862e+308, 2.1825e+00, 8.9725e-02, - 2DIAGNOSTIC, 3, -6.485591896673e-01, 1.797693134862e+308, 2.2733e+00, 9.0876e-02, - 2DIAGNOSTIC, 4, -6.486071858584e-01, 1.797693134862e+308, 2.3629e+00, 8.9550e-02, - 2DIAGNOSTIC, 5, -6.486930163854e-01, 1.797693134862e+308, 2.4620e+00, 9.9136e-02, - 2DIAGNOSTIC, 6, -6.487335732735e-01, 1.797693134862e+308, 2.5764e+00, 1.1436e-01, - 2DIAGNOSTIC, 7, -6.487609985763e-01, 1.797693134862e+308, 2.6663e+00, 8.9963e-02, - 2DIAGNOSTIC, 8, -6.487738374146e-01, 1.797693134862e+308, 2.7673e+00, 1.0098e-01, - 2DIAGNOSTIC, 9, -6.488109507729e-01, 1.797693134862e+308, 2.8848e+00, 1.1752e-01, - 2DIAGNOSTIC, 10, -6.488225656497e-01, 8.955569163660e-05, 2.9736e+00, 8.8769e-02, - 2DIAGNOSTIC, 11, -6.489975239379e-01, 4.550572797164e-05, 3.0891e+00, 1.1554e-01, - 2DIAGNOSTIC, 12, -6.490306279054e-01, 3.703356157717e-05, 3.1907e+00, 1.0160e-01, - 2DIAGNOSTIC, 13, -6.490247576712e-01, 3.388371262528e-05, 3.2932e+00, 1.0248e-01, - 2DIAGNOSTIC, 14, -6.490233688645e-01, 2.982429643007e-05, 3.3945e+00, 1.0123e-01, - 2DIAGNOSTIC, 15, -6.490193392673e-01, 2.614806016710e-05, 3.4932e+00, 9.8704e-02, - 2DIAGNOSTIC, 16, -6.490198069599e-01, 2.176562238415e-05, 3.5950e+00, 1.0189e-01, - 2DIAGNOSTIC, 17, -6.490179812500e-01, 1.671204710539e-05, 3.6945e+00, 9.9503e-02, - 2DIAGNOSTIC, 18, -6.490160931230e-01, 1.116208065496e-05, 3.7819e+00, 8.7322e-02, - 2DIAGNOSTIC, 19, -6.490216794323e-01, 6.366239584131e-06, 3.8854e+00, 1.0349e-01, - 2DIAGNOSTIC, 20, -6.490228809670e-01, 1.788587851902e-06, 3.9960e+00, 1.1067e-01, - 2DIAGNOSTIC, 21, -6.490221955091e-01, 1.242530720258e-06, 4.0875e+00, 9.1521e-02, - 2DIAGNOSTIC, 22, -6.490177896936e-01, 1.347939598446e-06, 4.1965e+00, 1.0892e-01, - 2DIAGNOSTIC, 23, -6.490256684198e-01, 1.494564387354e-06, 4.3006e+00, 1.0408e-01, - 2DIAGNOSTIC, 24, -6.490219068391e-01, 1.519265913977e-06, 4.3914e+00, 9.0807e-02, - 2DIAGNOSTIC, 25, -6.490273213245e-01, 1.548536164742e-06, 4.4999e+00, 1.0859e-01, - 2DIAGNOSTIC, 26, -6.490278425726e-01, 1.567501564749e-06, 4.5952e+00, 9.5275e-02, - 2DIAGNOSTIC, 27, -6.490418745244e-01, 1.753575429225e-06, 4.7305e+00, 1.3532e-01, - 2DIAGNOSTIC, 28, -6.490429681252e-01, 1.850830130434e-06, 4.8210e+00, 9.0426e-02, - 2DIAGNOSTIC, 29, -6.490507527290e-01, 2.076529228665e-06, 4.9417e+00, 1.2076e-01, - 2DIAGNOSTIC, 30, -6.490520066451e-01, 2.230940900745e-06, 5.0609e+00, 1.1915e-01, - 2DIAGNOSTIC, 31, -6.490571108644e-01, 2.329207803228e-06, 5.1795e+00, 1.1858e-01, - 2DIAGNOSTIC, 32, -6.490564432109e-01, 2.222556557706e-06, 5.3419e+00, 1.6245e-01, - 2DIAGNOSTIC, 33, -6.490493141834e-01, 2.018244995329e-06, 5.4473e+00, 1.0537e-01, - 2DIAGNOSTIC, 34, -6.490493325352e-01, 1.680481875758e-06, 5.7862e+00, 3.3891e-01, - 2DIAGNOSTIC, 35, -6.490493325351e-01, 1.359087608833e-06, 6.0002e+00, 2.1398e-01, - 2DIAGNOSTIC, 36, -6.490493325351e-01, 1.013422831257e-06, 6.1029e+00, 1.0274e-01, - Elapsed time (stage 0): 6.2500e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.935376860893e-01, 1.797693134862e+308, 2.1646e-01, 2.1646e-01, - 2DIAGNOSTIC, 2, -9.975597763366e-01, 1.797693134862e+308, 2.1780e-01, 1.3430e-03, - 2DIAGNOSTIC, 3, -1.000223538724e+00, 1.797693134862e+308, 2.1914e-01, 1.3361e-03, - 2DIAGNOSTIC, 4, -1.005584856517e+00, 1.797693134862e+308, 2.2062e-01, 1.4801e-03, - 2DIAGNOSTIC, 5, -1.008367947526e+00, 1.797693134862e+308, 2.2207e-01, 1.4470e-03, - 2DIAGNOSTIC, 6, -1.009261662507e+00, 1.797693134862e+308, 2.2333e-01, 1.2650e-03, - 2DIAGNOSTIC, 7, -1.012411944487e+00, 1.797693134862e+308, 2.2480e-01, 1.4648e-03, - 2DIAGNOSTIC, 8, -1.017715059012e+00, 1.797693134862e+308, 2.2631e-01, 1.5130e-03, - 2DIAGNOSTIC, 9, -1.021378402389e+00, 1.797693134862e+308, 2.2783e-01, 1.5230e-03, - 2DIAGNOSTIC, 10, -1.020322150294e+00, 1.784261366742e-03, 2.2959e-01, 1.7529e-03, - 2DIAGNOSTIC, 11, -1.019295854115e+00, 1.417279387672e-03, 2.3218e-01, 2.5971e-03, - 2DIAGNOSTIC, 12, -1.019366276867e+00, 1.081991246078e-03, 2.3366e-01, 1.4811e-03, - 2DIAGNOSTIC, 13, -1.018718702616e+00, 7.394972075250e-04, 2.3515e-01, 1.4899e-03, - 2DIAGNOSTIC, 14, -1.019016156191e+00, 4.910552893770e-04, 2.3670e-01, 1.5478e-03, - 2DIAGNOSTIC, 15, -1.019321631723e+00, 2.908930980395e-04, 2.3821e-01, 1.5080e-03, - 2DIAGNOSTIC, 16, -1.018790096130e+00, 9.648482168231e-05, 2.3971e-01, 1.4982e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.939729396530e-01, 1.797693134862e+308, 4.6231e-01, 2.2260e-01, - 2DIAGNOSTIC, 2, -8.940230193614e-01, 1.797693134862e+308, 4.6474e-01, 2.4309e-03, - 2DIAGNOSTIC, 3, -8.950878157746e-01, 1.797693134862e+308, 4.6718e-01, 2.4421e-03, - 2DIAGNOSTIC, 4, -8.973604875609e-01, 1.797693134862e+308, 4.7008e-01, 2.8989e-03, - 2DIAGNOSTIC, 5, -8.981228004999e-01, 1.797693134862e+308, 4.7267e-01, 2.5949e-03, - 2DIAGNOSTIC, 6, -8.986456640046e-01, 1.797693134862e+308, 4.7472e-01, 2.0511e-03, - 2DIAGNOSTIC, 7, -9.015577098136e-01, 1.797693134862e+308, 4.7708e-01, 2.3561e-03, - 2DIAGNOSTIC, 8, -9.021014827025e-01, 1.797693134862e+308, 4.7971e-01, 2.6329e-03, - 2DIAGNOSTIC, 9, -9.024317398832e-01, 1.797693134862e+308, 4.8293e-01, 3.2170e-03, - 2DIAGNOSTIC, 10, -9.020899527606e-01, 7.127498877699e-04, 4.8577e-01, 2.8441e-03, - 2DIAGNOSTIC, 11, -9.018368266253e-01, 5.729154964293e-04, 4.8802e-01, 2.2461e-03, - 2DIAGNOSTIC, 12, -9.017489365083e-01, 4.034395866342e-04, 4.9026e-01, 2.2440e-03, - 2DIAGNOSTIC, 13, -9.018466434063e-01, 2.503671497856e-04, 4.9251e-01, 2.2490e-03, - 2DIAGNOSTIC, 14, -9.019639170327e-01, 1.510432188123e-04, 4.9477e-01, 2.2540e-03, - 2DIAGNOSTIC, 15, -9.021656621765e-01, 7.237003959414e-05, 4.9737e-01, 2.6028e-03, - 2DIAGNOSTIC, 16, -9.021225267538e-01, 5.235192008568e-06, 5.0006e-01, 2.6910e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.859031990892e-01, 1.797693134862e+308, 7.5046e-01, 2.5040e-01, - 2DIAGNOSTIC, 2, -7.879423751436e-01, 1.797693134862e+308, 7.6403e-01, 1.3568e-02, - 2DIAGNOSTIC, 3, -7.903267940539e-01, 1.797693134862e+308, 7.7754e-01, 1.3510e-02, - 2DIAGNOSTIC, 4, -7.922867411472e-01, 1.797693134862e+308, 7.9096e-01, 1.3419e-02, - 2DIAGNOSTIC, 5, -7.933906422405e-01, 1.797693134862e+308, 8.0405e-01, 1.3086e-02, - 2DIAGNOSTIC, 6, -7.937968101909e-01, 1.797693134862e+308, 8.1965e-01, 1.5604e-02, - 2DIAGNOSTIC, 7, -7.939141047548e-01, 1.797693134862e+308, 8.3511e-01, 1.5456e-02, - 2DIAGNOSTIC, 8, -7.940126380982e-01, 1.797693134862e+308, 8.6840e-01, 3.3294e-02, - 2DIAGNOSTIC, 9, -7.939975855445e-01, 1.797693134862e+308, 8.8385e-01, 1.5450e-02, - 2DIAGNOSTIC, 10, -7.940021651846e-01, 6.062133532195e-04, 8.9784e-01, 1.3989e-02, - 2DIAGNOSTIC, 11, -7.939854605372e-01, 3.540120278654e-04, 9.1413e-01, 1.6287e-02, - 2DIAGNOSTIC, 12, -7.939924201083e-01, 1.727162706834e-04, 9.2815e-01, 1.4020e-02, - 2DIAGNOSTIC, 13, -7.939791064115e-01, 6.836550661289e-05, 9.4205e-01, 1.3904e-02, - 2DIAGNOSTIC, 14, -7.939952052066e-01, 2.294429531755e-05, 9.5602e-01, 1.3968e-02, - 2DIAGNOSTIC, 15, -7.939934351111e-01, 7.831313576873e-06, 9.7184e-01, 1.5822e-02, - 2DIAGNOSTIC, 16, -7.940177854891e-01, 3.685867255243e-06, 9.8622e-01, 1.4382e-02, - 2DIAGNOSTIC, 17, -7.939984133607e-01, 1.866325197754e-06, 1.0017e+00, 1.5523e-02, - 2DIAGNOSTIC, 18, -7.939530257402e-01, 1.331679159465e-06, 1.0153e+00, 1.3561e-02, - 2DIAGNOSTIC, 19, -7.939953074808e-01, 1.426999608298e-06, 1.0350e+00, 1.9646e-02, - 2DIAGNOSTIC, 20, -7.939818623628e-01, 1.343974078159e-06, 1.0509e+00, 1.5952e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.576097760385e-01, 1.797693134862e+308, 1.5208e+00, 4.6991e-01, - 2DIAGNOSTIC, 2, -6.581944414275e-01, 1.797693134862e+308, 1.6135e+00, 9.2672e-02, - 2DIAGNOSTIC, 3, -6.585550654657e-01, 1.797693134862e+308, 1.7059e+00, 9.2439e-02, - 2DIAGNOSTIC, 4, -6.589945725790e-01, 1.797693134862e+308, 1.7998e+00, 9.3920e-02, - 2DIAGNOSTIC, 5, -6.596603033622e-01, 1.797693134862e+308, 1.9155e+00, 1.1564e-01, - 2DIAGNOSTIC, 6, -6.597799959293e-01, 1.797693134862e+308, 2.0607e+00, 1.4518e-01, - 2DIAGNOSTIC, 7, -6.598438025061e-01, 1.797693134862e+308, 2.1529e+00, 9.2238e-02, - 2DIAGNOSTIC, 8, -6.598681691851e-01, 1.797693134862e+308, 2.2455e+00, 9.2579e-02, - 2DIAGNOSTIC, 9, -6.599589786545e-01, 1.797693134862e+308, 2.3374e+00, 9.1887e-02, - 2DIAGNOSTIC, 10, -6.601361982957e-01, 2.362408026838e-04, 2.4305e+00, 9.3156e-02, - 2DIAGNOSTIC, 11, -6.602448521494e-01, 1.681180339105e-04, 2.6114e+00, 1.8083e-01, - 2DIAGNOSTIC, 12, -6.602494501964e-01, 1.178835116797e-04, 2.7373e+00, 1.2598e-01, - 2DIAGNOSTIC, 13, -6.602466879087e-01, 7.686124065896e-05, 2.8512e+00, 1.1383e-01, - 2DIAGNOSTIC, 14, -6.602437611817e-01, 4.786230751540e-05, 2.9672e+00, 1.1604e-01, - 2DIAGNOSTIC, 15, -6.602410306654e-01, 3.744860580281e-05, 3.0853e+00, 1.1810e-01, - 2DIAGNOSTIC, 16, -6.602378722590e-01, 2.816744656219e-05, 3.2035e+00, 1.1819e-01, - 2DIAGNOSTIC, 17, -6.602320876796e-01, 1.911132124359e-05, 3.3464e+00, 1.4288e-01, - 2DIAGNOSTIC, 18, -6.602300100310e-01, 1.003746950614e-05, 3.4392e+00, 9.2783e-02, - 2DIAGNOSTIC, 19, -6.602279804661e-01, 3.082608669470e-06, 3.5467e+00, 1.0755e-01, - Elapsed time (stage 1): 3.6853e+00 - - -Total elapsed time: 9.9384e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:05:33 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:05:34 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5599f1f094f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.749, 56.4089, -118.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5599f1f0efa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7c239e5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5599f1f0a850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.749, 56.4089, -118.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5599f1f07f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7c20326010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5599f1f21b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.749, 56.4089, -118.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5599f1f0e550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7c1cc67010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5599f1f26d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.749, 56.4089, -118.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5599f1f24c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7c195a8010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x5599f1f28f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.749, 56.4089, -118.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5599f1f273a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7c15ee9010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5599f1f29540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.749, 56.4089, -118.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5599f1f294d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7c1282a010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.138507566848e-01, 1.797693134862e+308, 2.2445e-01, 2.2445e-01, - 2DIAGNOSTIC, 2, -7.149834144551e-01, 1.797693134862e+308, 2.2664e-01, 2.1961e-03, - 2DIAGNOSTIC, 3, -7.156963943618e-01, 1.797693134862e+308, 2.2872e-01, 2.0721e-03, - 2DIAGNOSTIC, 4, -7.161083954340e-01, 1.797693134862e+308, 2.3088e-01, 2.1648e-03, - 2DIAGNOSTIC, 5, -7.161940234091e-01, 1.797693134862e+308, 2.3314e-01, 2.2571e-03, - 2DIAGNOSTIC, 6, -7.165144565353e-01, 1.797693134862e+308, 2.3559e-01, 2.4509e-03, - 2DIAGNOSTIC, 7, -7.172797677538e-01, 1.797693134862e+308, 2.3808e-01, 2.4958e-03, - 2DIAGNOSTIC, 8, -7.176910097461e-01, 1.797693134862e+308, 2.4047e-01, 2.3820e-03, - 2DIAGNOSTIC, 9, -7.195870055028e-01, 1.797693134862e+308, 2.4337e-01, 2.8999e-03, - 2DIAGNOSTIC, 10, -7.192571605032e-01, 4.563602334689e-04, 2.4592e-01, 2.5501e-03, - 2DIAGNOSTIC, 11, -7.188458897307e-01, 3.719810571053e-04, 2.4839e-01, 2.4710e-03, - 2DIAGNOSTIC, 12, -7.189574880946e-01, 3.100019954708e-04, 2.5059e-01, 2.2042e-03, - 2DIAGNOSTIC, 13, -7.187986985266e-01, 2.456351014222e-04, 2.5282e-01, 2.2311e-03, - 2DIAGNOSTIC, 14, -7.188768321001e-01, 1.817240705439e-04, 2.5544e-01, 2.6159e-03, - 2DIAGNOSTIC, 15, -7.190332624542e-01, 1.164785816791e-04, 2.6270e-01, 7.2601e-03, - 2DIAGNOSTIC, 16, -7.190332579041e-01, 5.723853823843e-05, 2.6503e-01, 2.3270e-03, - 2DIAGNOSTIC, 17, -7.190332898130e-01, 1.793804041788e-05, 2.6727e-01, 2.2471e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.218212883008e-01, 1.797693134862e+308, 4.9554e-01, 2.2827e-01, - 2DIAGNOSTIC, 2, -6.237158787862e-01, 1.797693134862e+308, 5.0985e-01, 1.4304e-02, - 2DIAGNOSTIC, 3, -6.259896247219e-01, 1.797693134862e+308, 5.2411e-01, 1.4259e-02, - 2DIAGNOSTIC, 4, -6.278958848551e-01, 1.797693134862e+308, 5.3843e-01, 1.4325e-02, - 2DIAGNOSTIC, 5, -6.290593646227e-01, 1.797693134862e+308, 5.5306e-01, 1.4630e-02, - 2DIAGNOSTIC, 6, -6.294035621018e-01, 1.797693134862e+308, 5.7782e-01, 2.4759e-02, - 2DIAGNOSTIC, 7, -6.294379880180e-01, 1.797693134862e+308, 5.9423e-01, 1.6405e-02, - 2DIAGNOSTIC, 8, -6.296572052518e-01, 1.797693134862e+308, 6.1065e-01, 1.6425e-02, - 2DIAGNOSTIC, 9, -6.297295680774e-01, 1.797693134862e+308, 6.3259e-01, 2.1936e-02, - 2DIAGNOSTIC, 10, -6.297456441046e-01, 7.516857084806e-04, 6.4720e-01, 1.4612e-02, - 2DIAGNOSTIC, 11, -6.297287278806e-01, 4.500787238978e-04, 6.6673e-01, 1.9530e-02, - 2DIAGNOSTIC, 12, -6.297182578859e-01, 2.289425059775e-04, 6.8344e-01, 1.6713e-02, - 2DIAGNOSTIC, 13, -6.297061236144e-01, 9.885425609395e-05, 6.9754e-01, 1.4094e-02, - 2DIAGNOSTIC, 14, -6.297044376718e-01, 3.918742976529e-05, 7.1141e-01, 1.3874e-02, - 2DIAGNOSTIC, 15, -6.297327651538e-01, 1.986322340723e-05, 7.2759e-01, 1.6178e-02, - 2DIAGNOSTIC, 16, -6.297448238157e-01, 1.146176808479e-05, 7.4710e-01, 1.9510e-02, - 2DIAGNOSTIC, 17, -6.297365042624e-01, 3.743169811700e-06, 7.6361e-01, 1.6515e-02, - 2DIAGNOSTIC, 18, -6.297138179206e-01, 1.621339315479e-06, 7.7802e-01, 1.4409e-02, - 2DIAGNOSTIC, 19, -6.296965266083e-01, 1.044591408803e-06, 7.9479e-01, 1.6770e-02, - 2DIAGNOSTIC, 20, -6.297000664066e-01, 1.021661485981e-06, 8.1119e-01, 1.6393e-02, - 2DIAGNOSTIC, 21, -6.297163923026e-01, 1.023529484515e-06, 8.2692e-01, 1.5733e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.216688298740e-01, 1.797693134862e+308, 1.2319e+00, 4.0494e-01, - 2DIAGNOSTIC, 2, -5.217104848749e-01, 1.797693134862e+308, 1.3257e+00, 9.3793e-02, - 2DIAGNOSTIC, 3, -5.217696305474e-01, 1.797693134862e+308, 1.4210e+00, 9.5304e-02, - 2DIAGNOSTIC, 4, -5.219346895041e-01, 1.797693134862e+308, 1.5194e+00, 9.8399e-02, - 2DIAGNOSTIC, 5, -5.221326217895e-01, 1.797693134862e+308, 1.6158e+00, 9.6478e-02, - 2DIAGNOSTIC, 6, -5.224376799996e-01, 1.797693134862e+308, 1.8296e+00, 2.1372e-01, - 2DIAGNOSTIC, 7, -5.224385490168e-01, 1.797693134862e+308, 1.9360e+00, 1.0643e-01, - 2DIAGNOSTIC, 8, -5.224373461039e-01, 1.797693134862e+308, 2.0985e+00, 1.6247e-01, - 2DIAGNOSTIC, 9, -5.224383400882e-01, 1.797693134862e+308, 2.2114e+00, 1.1298e-01, - 2DIAGNOSTIC, 10, -5.224351242386e-01, 1.205693092041e-04, 2.3230e+00, 1.1158e-01, - 2DIAGNOSTIC, 11, -5.224329453369e-01, 9.195090770082e-05, 2.4185e+00, 9.5434e-02, - 2DIAGNOSTIC, 12, -5.224329218958e-01, 6.211684710325e-05, 2.5285e+00, 1.1005e-01, - 2DIAGNOSTIC, 13, -5.224304480714e-01, 3.398561069554e-05, 2.6273e+00, 9.8758e-02, - 2DIAGNOSTIC, 14, -5.224298911814e-01, 1.332931196357e-05, 2.7372e+00, 1.0989e-01, - 2DIAGNOSTIC, 15, -5.224288513928e-01, 1.246191167870e-06, 2.8457e+00, 1.0859e-01, - 2DIAGNOSTIC, 16, -5.224295825302e-01, 1.155277901954e-06, 2.9578e+00, 1.1211e-01, - 2DIAGNOSTIC, 17, -5.224272103027e-01, 1.102703438331e-06, 3.0684e+00, 1.1051e-01, - 2DIAGNOSTIC, 18, -5.224257743225e-01, 1.047264116052e-06, 3.2036e+00, 1.3528e-01, - 2DIAGNOSTIC, 19, -5.224250119152e-01, 1.074285316094e-06, 3.3113e+00, 1.0771e-01, - 2DIAGNOSTIC, 20, -5.224245781895e-01, 1.055220608760e-06, 3.4189e+00, 1.0759e-01, - 2DIAGNOSTIC, 21, -5.224241379755e-01, 1.018508652591e-06, 3.5200e+00, 1.0103e-01, - 2DIAGNOSTIC, 22, -5.224244390192e-01, 1.040470368689e-06, 3.6136e+00, 9.3678e-02, - 2DIAGNOSTIC, 23, -5.224259728086e-01, 1.076965302500e-06, 3.7224e+00, 1.0875e-01, - 2DIAGNOSTIC, 24, -5.224286349834e-01, 1.186244056879e-06, 3.8308e+00, 1.0838e-01, - 2DIAGNOSTIC, 25, -5.224251046724e-01, 1.197928796472e-06, 3.9407e+00, 1.0997e-01, - 2DIAGNOSTIC, 26, -5.224252459028e-01, 1.238275348411e-06, 4.0517e+00, 1.1098e-01, - 2DIAGNOSTIC, 27, -5.224249314127e-01, 1.220368965743e-06, 4.1605e+00, 1.0881e-01, - 2DIAGNOSTIC, 28, -5.224246089724e-01, 1.164164070568e-06, 4.2548e+00, 9.4301e-02, - 2DIAGNOSTIC, 29, -5.224251136743e-01, 1.104037679202e-06, 4.3663e+00, 1.1145e-01, - 2DIAGNOSTIC, 30, -5.224229086765e-01, 1.000618665981e-06, 4.4756e+00, 1.0931e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.495592557166e-01, 1.797693134862e+308, 5.8017e+00, 1.3261e+00, - 2DIAGNOSTIC, 2, -4.497091088690e-01, 1.797693134862e+308, 6.4137e+00, 6.1200e-01, - 2DIAGNOSTIC, 3, -4.498269044599e-01, 1.797693134862e+308, 7.2229e+00, 8.0924e-01, - 2DIAGNOSTIC, 4, -4.498481871525e-01, 1.797693134862e+308, 8.5601e+00, 1.3372e+00, - 2DIAGNOSTIC, 5, -4.498496811327e-01, 1.797693134862e+308, 9.2881e+00, 7.2806e-01, - 2DIAGNOSTIC, 6, -4.498492390863e-01, 1.797693134862e+308, 9.9574e+00, 6.6927e-01, - 2DIAGNOSTIC, 7, -4.498485400413e-01, 1.797693134862e+308, 1.0604e+01, 6.4673e-01, - 2DIAGNOSTIC, 8, -4.498478371104e-01, 1.797693134862e+308, 1.1395e+01, 7.9074e-01, - 2DIAGNOSTIC, 9, -4.498477809416e-01, 1.797693134862e+308, 1.2082e+01, 6.8742e-01, - 2DIAGNOSTIC, 10, -4.498475246656e-01, 2.998411414236e-05, 1.2646e+01, 5.6331e-01, - 2DIAGNOSTIC, 11, -4.498474790628e-01, 1.180233475780e-05, 1.3409e+01, 7.6371e-01, - 2DIAGNOSTIC, 12, -4.498475258157e-01, 3.582577284195e-06, 1.4058e+01, 6.4855e-01, - 2DIAGNOSTIC, 13, -4.498474045597e-01, 2.234003492946e-06, 1.4631e+01, 5.7323e-01, - 2DIAGNOSTIC, 14, -4.498473115495e-01, 2.051433668049e-06, 1.5282e+01, 6.5076e-01, - 2DIAGNOSTIC, 15, -4.498474106531e-01, 1.980452384032e-06, 1.5851e+01, 5.6899e-01, - 2DIAGNOSTIC, 16, -4.498470906417e-01, 1.901369819368e-06, 1.6516e+01, 6.6552e-01, - 2DIAGNOSTIC, 17, -4.498468409611e-01, 1.805219733537e-06, 1.7269e+01, 7.5313e-01, - 2DIAGNOSTIC, 18, -4.498464825560e-01, 1.688774117235e-06, 1.7992e+01, 7.2255e-01, - 2DIAGNOSTIC, 19, -4.498463716436e-01, 1.586682242781e-06, 1.8656e+01, 6.6363e-01, - 2DIAGNOSTIC, 20, -4.498462425288e-01, 1.490594443210e-06, 1.9338e+01, 6.8196e-01, - 2DIAGNOSTIC, 21, -4.498461276307e-01, 1.408087647148e-06, 1.9918e+01, 5.8048e-01, - 2DIAGNOSTIC, 22, -4.498458833876e-01, 1.337682539328e-06, 2.0550e+01, 6.3143e-01, - 2DIAGNOSTIC, 23, -4.498459983732e-01, 1.283620829372e-06, 2.1195e+01, 6.4596e-01, - 2DIAGNOSTIC, 24, -4.498459204465e-01, 1.238489815002e-06, 2.1784e+01, 5.8891e-01, - 2DIAGNOSTIC, 25, -4.498458585129e-01, 1.206151352053e-06, 2.2421e+01, 6.3694e-01, - 2DIAGNOSTIC, 26, -4.498457963260e-01, 1.173420000534e-06, 2.3078e+01, 6.5683e-01, - 2DIAGNOSTIC, 27, -4.498452889363e-01, 1.130365988804e-06, 2.3670e+01, 5.9148e-01, - 2DIAGNOSTIC, 28, -4.498453670346e-01, 1.088838223917e-06, 2.4316e+01, 6.4670e-01, - 2DIAGNOSTIC, 29, -4.498453826343e-01, 1.052346065414e-06, 2.5136e+01, 8.1941e-01, - 2DIAGNOSTIC, 30, -4.498454658817e-01, 1.021452339746e-06, 2.5798e+01, 6.6221e-01, - Elapsed time (stage 0): 2.6186e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.219866703126e-01, 1.797693134862e+308, 1.9863e-01, 1.9862e-01, - 2DIAGNOSTIC, 2, -7.234859752969e-01, 1.797693134862e+308, 2.0146e-01, 2.8341e-03, - 2DIAGNOSTIC, 3, -7.255549751226e-01, 1.797693134862e+308, 2.0425e-01, 2.7931e-03, - 2DIAGNOSTIC, 4, -7.277348301667e-01, 1.797693134862e+308, 2.0689e-01, 2.6391e-03, - 2DIAGNOSTIC, 5, -7.300563863582e-01, 1.797693134862e+308, 2.0910e-01, 2.2130e-03, - 2DIAGNOSTIC, 6, -7.334391216783e-01, 1.797693134862e+308, 2.1149e-01, 2.3861e-03, - 2DIAGNOSTIC, 7, -7.340897765627e-01, 1.797693134862e+308, 2.1430e-01, 2.8059e-03, - 2DIAGNOSTIC, 8, -7.349985342359e-01, 1.797693134862e+308, 2.1756e-01, 3.2599e-03, - 2DIAGNOSTIC, 9, -7.362106962873e-01, 1.797693134862e+308, 2.1983e-01, 2.2719e-03, - 2DIAGNOSTIC, 10, -7.372953102072e-01, 1.426448065819e-03, 2.2263e-01, 2.8040e-03, - 2DIAGNOSTIC, 11, -7.392156668164e-01, 1.216599460741e-03, 2.2488e-01, 2.2471e-03, - 2DIAGNOSTIC, 12, -7.395275689227e-01, 9.904828420381e-04, 2.2757e-01, 2.6948e-03, - 2DIAGNOSTIC, 13, -7.394548123050e-01, 7.708490535449e-04, 2.3024e-01, 2.6629e-03, - 2DIAGNOSTIC, 14, -7.390230371392e-01, 5.613921657575e-04, 2.3389e-01, 3.6530e-03, - 2DIAGNOSTIC, 15, -7.389330160738e-01, 3.844459726506e-04, 2.3612e-01, 2.2330e-03, - 2DIAGNOSTIC, 16, -7.389497842859e-01, 2.763189195750e-04, 2.3844e-01, 2.3160e-03, - 2DIAGNOSTIC, 17, -7.389749431250e-01, 1.708138794714e-04, 2.4069e-01, 2.2500e-03, - 2DIAGNOSTIC, 18, -7.388564137797e-01, 7.869858059362e-05, 2.4299e-01, 2.3038e-03, - 2DIAGNOSTIC, 19, -7.389076701851e-01, 1.512179566259e-05, 2.4558e-01, 2.5890e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.248280851706e-01, 1.797693134862e+308, 4.7185e-01, 2.2626e-01, - 2DIAGNOSTIC, 2, -6.255397051061e-01, 1.797693134862e+308, 4.8708e-01, 1.5230e-02, - 2DIAGNOSTIC, 3, -6.267100560338e-01, 1.797693134862e+308, 5.0247e-01, 1.5393e-02, - 2DIAGNOSTIC, 4, -6.285455967771e-01, 1.797693134862e+308, 5.1950e-01, 1.7035e-02, - 2DIAGNOSTIC, 5, -6.302558370939e-01, 1.797693134862e+308, 5.3723e-01, 1.7722e-02, - 2DIAGNOSTIC, 6, -6.303017685821e-01, 1.797693134862e+308, 5.5386e-01, 1.6636e-02, - 2DIAGNOSTIC, 7, -6.303503792500e-01, 1.797693134862e+308, 5.7098e-01, 1.7114e-02, - 2DIAGNOSTIC, 8, -6.304009187356e-01, 1.797693134862e+308, 5.8572e-01, 1.4744e-02, - 2DIAGNOSTIC, 9, -6.304639464763e-01, 1.797693134862e+308, 6.0059e-01, 1.4874e-02, - 2DIAGNOSTIC, 10, -6.305172984176e-01, 6.103305481842e-04, 6.1563e-01, 1.5030e-02, - 2DIAGNOSTIC, 11, -6.305707304713e-01, 4.046463299820e-04, 6.3075e-01, 1.5120e-02, - 2DIAGNOSTIC, 12, -6.308467424912e-01, 2.350634876435e-04, 6.4938e-01, 1.8634e-02, - 2DIAGNOSTIC, 13, -6.309477537401e-01, 1.134750259709e-04, 6.7247e-01, 2.3091e-02, - 2DIAGNOSTIC, 14, -6.309788036496e-01, 5.788186828061e-05, 6.8991e-01, 1.7444e-02, - 2DIAGNOSTIC, 15, -6.310625814252e-01, 5.875025861976e-05, 7.0513e-01, 1.5211e-02, - 2DIAGNOSTIC, 16, -6.311197727684e-01, 5.716303956925e-05, 7.2046e-01, 1.5334e-02, - 2DIAGNOSTIC, 17, -6.311423884441e-01, 5.243818087942e-05, 7.3572e-01, 1.5257e-02, - 2DIAGNOSTIC, 18, -6.311688831883e-01, 4.545657084655e-05, 7.5104e-01, 1.5324e-02, - 2DIAGNOSTIC, 19, -6.312303851866e-01, 3.818850980707e-05, 7.6807e-01, 1.7034e-02, - 2DIAGNOSTIC, 20, -6.312415580187e-01, 2.972617567253e-05, 7.8608e-01, 1.8001e-02, - 2DIAGNOSTIC, 21, -6.312470408783e-01, 2.057257577413e-05, 8.0423e-01, 1.8150e-02, - 2DIAGNOSTIC, 22, -6.312598955251e-01, 1.637898542625e-05, 8.2156e-01, 1.7336e-02, - 2DIAGNOSTIC, 23, -6.312747009008e-01, 1.342858002300e-05, 8.3921e-01, 1.7646e-02, - 2DIAGNOSTIC, 24, -6.312755023022e-01, 1.014346408692e-05, 8.5650e-01, 1.7288e-02, - 2DIAGNOSTIC, 25, -6.312758029560e-01, 7.792387963772e-06, 8.7163e-01, 1.5139e-02, - 2DIAGNOSTIC, 26, -6.312760951138e-01, 6.019254710381e-06, 9.2198e-01, 5.0349e-02, - 2DIAGNOSTIC, 27, -6.312760951080e-01, 4.301863522911e-06, 9.6654e-01, 4.4552e-02, - 2DIAGNOSTIC, 28, -6.312760951080e-01, 2.810057952718e-06, 9.8335e-01, 1.6814e-02, - 2DIAGNOSTIC, 29, -6.312760951080e-01, 2.217882570418e-06, 1.0031e+00, 1.9745e-02, - 2DIAGNOSTIC, 30, -6.312760951080e-01, 1.730781161141e-06, 1.0200e+00, 1.6949e-02, - 2DIAGNOSTIC, 31, -6.312760951080e-01, 1.288909014685e-06, 1.0369e+00, 1.6876e-02, - 2DIAGNOSTIC, 32, -6.312760951080e-01, 1.025235417375e-06, 1.0546e+00, 1.7641e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.226523253128e-01, 1.797693134862e+308, 1.4485e+00, 3.9398e-01, - 2DIAGNOSTIC, 2, -5.232534758390e-01, 1.797693134862e+308, 1.5506e+00, 1.0202e-01, - 2DIAGNOSTIC, 3, -5.234248494160e-01, 1.797693134862e+308, 1.6590e+00, 1.0841e-01, - 2DIAGNOSTIC, 4, -5.234800837381e-01, 1.797693134862e+308, 1.7672e+00, 1.0828e-01, - 2DIAGNOSTIC, 5, -5.235991654256e-01, 1.797693134862e+308, 1.9166e+00, 1.4932e-01, - 2DIAGNOSTIC, 6, -5.236545298281e-01, 1.797693134862e+308, 2.0627e+00, 1.4617e-01, - 2DIAGNOSTIC, 7, -5.236655528450e-01, 1.797693134862e+308, 2.1769e+00, 1.1411e-01, - 2DIAGNOSTIC, 8, -5.236764927583e-01, 1.797693134862e+308, 2.2857e+00, 1.0888e-01, - 2DIAGNOSTIC, 9, -5.236842713652e-01, 1.797693134862e+308, 2.3941e+00, 1.0838e-01, - 2DIAGNOSTIC, 10, -5.236965181977e-01, 9.509569988855e-05, 2.5046e+00, 1.1049e-01, - 2DIAGNOSTIC, 11, -5.237006227316e-01, 4.562246203967e-05, 2.6515e+00, 1.4688e-01, - 2DIAGNOSTIC, 12, -5.237033744173e-01, 2.777047581955e-05, 2.7620e+00, 1.1056e-01, - 2DIAGNOSTIC, 13, -5.237045754925e-01, 1.763252004179e-05, 2.8672e+00, 1.0519e-01, - 2DIAGNOSTIC, 14, -5.237064890978e-01, 9.674560676506e-06, 2.9851e+00, 1.1791e-01, - 2DIAGNOSTIC, 15, -5.237125219632e-01, 6.574997404071e-06, 3.1473e+00, 1.6221e-01, - 2DIAGNOSTIC, 16, -5.237133070451e-01, 5.348970789743e-06, 3.5088e+00, 3.6140e-01, - 2DIAGNOSTIC, 17, -5.237133070423e-01, 4.309684646472e-06, 3.8354e+00, 3.2660e-01, - 2DIAGNOSTIC, 18, -5.237133070423e-01, 3.492447234972e-06, 3.9571e+00, 1.2170e-01, - 2DIAGNOSTIC, 19, -5.237133070423e-01, 2.814981548131e-06, 4.0774e+00, 1.2039e-01, - 2DIAGNOSTIC, 20, -5.237133070423e-01, 2.426894302646e-06, 4.1979e+00, 1.2043e-01, - 2DIAGNOSTIC, 21, -5.237133070423e-01, 2.102198932846e-06, 4.3489e+00, 1.5098e-01, - 2DIAGNOSTIC, 22, -5.237133070423e-01, 1.822175291918e-06, 4.4786e+00, 1.2977e-01, - 2DIAGNOSTIC, 23, -5.237133070423e-01, 1.560398634803e-06, 4.6093e+00, 1.3072e-01, - 2DIAGNOSTIC, 24, -5.237133070423e-01, 1.343420346869e-06, 4.7403e+00, 1.3099e-01, - 2DIAGNOSTIC, 25, -5.237133070423e-01, 1.272628654798e-06, 4.8701e+00, 1.2974e-01, - 2DIAGNOSTIC, 26, -5.237133070423e-01, 1.223672883757e-06, 4.9872e+00, 1.1715e-01, - 2DIAGNOSTIC, 27, -5.237133070423e-01, 1.178344021149e-06, 5.1025e+00, 1.1523e-01, - 2DIAGNOSTIC, 28, -5.237133070423e-01, 1.136253461077e-06, 5.2209e+00, 1.1846e-01, - 2DIAGNOSTIC, 29, -5.237133070423e-01, 1.097066154088e-06, 5.3362e+00, 1.1531e-01, - 2DIAGNOSTIC, 30, -5.237133070423e-01, 1.060491730834e-06, 5.4375e+00, 1.0132e-01, - 2DIAGNOSTIC, 31, -5.237133070423e-01, 1.026277294446e-06, 5.5530e+00, 1.1550e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.495346537627e-01, 1.797693134862e+308, 6.8585e+00, 1.3054e+00, - 2DIAGNOSTIC, 2, -4.496801623029e-01, 1.797693134862e+308, 7.8287e+00, 9.7025e-01, - 2DIAGNOSTIC, 3, -4.496955490212e-01, 1.797693134862e+308, 8.4972e+00, 6.6844e-01, - 2DIAGNOSTIC, 4, -4.498071660664e-01, 1.797693134862e+308, 9.2393e+00, 7.4211e-01, - 2DIAGNOSTIC, 5, -4.498521406655e-01, 1.797693134862e+308, 9.8874e+00, 6.4816e-01, - 2DIAGNOSTIC, 6, -4.498759345944e-01, 1.797693134862e+308, 1.0516e+01, 6.2866e-01, - 2DIAGNOSTIC, 7, -4.499069380742e-01, 1.797693134862e+308, 1.1159e+01, 6.4297e-01, - 2DIAGNOSTIC, 8, -4.499749590561e-01, 1.797693134862e+308, 1.1982e+01, 8.2319e-01, - 2DIAGNOSTIC, 9, -4.499777092179e-01, 1.797693134862e+308, 1.2726e+01, 7.4404e-01, - 2DIAGNOSTIC, 10, -4.499858046801e-01, 6.369625066958e-05, 1.3425e+01, 6.9875e-01, - 2DIAGNOSTIC, 11, -4.499993071289e-01, 4.625088085644e-05, 1.5536e+01, 2.1114e+00, - 2DIAGNOSTIC, 12, -4.499993070872e-01, 3.551488434074e-05, 1.6191e+01, 6.5441e-01, - 2DIAGNOSTIC, 13, -4.499993072162e-01, 2.405367870953e-05, 1.6873e+01, 6.8248e-01, - 2DIAGNOSTIC, 14, -4.499993074334e-01, 1.727703815810e-05, 1.7519e+01, 6.4582e-01, - 2DIAGNOSTIC, 15, -4.499993077986e-01, 1.195396341094e-05, 1.8171e+01, 6.5155e-01, - 2DIAGNOSTIC, 16, -4.499993084104e-01, 7.323098904152e-06, 1.8829e+01, 6.5871e-01, - 2DIAGNOSTIC, 17, -4.499993094285e-01, 3.829952734645e-06, 1.9496e+01, 6.6646e-01, - 2DIAGNOSTIC, 18, -4.499993112011e-01, 2.939756981755e-06, 2.0146e+01, 6.4971e-01, - 2DIAGNOSTIC, 19, -4.499993141523e-01, 2.123891731140e-06, 2.0803e+01, 6.5782e-01, - 2DIAGNOSTIC, 20, -4.499993193248e-01, 1.591498117196e-06, 2.1488e+01, 6.8459e-01, - 2DIAGNOSTIC, 21, -4.499993278851e-01, 1.516169651508e-06, 2.2131e+01, 6.4337e-01, - 2DIAGNOSTIC, 22, -4.499993412418e-01, 1.447961932459e-06, 2.2784e+01, 6.5305e-01, - 2DIAGNOSTIC, 23, -4.499993600397e-01, 1.386030608438e-06, 2.3445e+01, 6.6014e-01, - 2DIAGNOSTIC, 24, -4.499993880113e-01, 1.329736058382e-06, 2.4078e+01, 6.3355e-01, - 2DIAGNOSTIC, 25, -4.499994186784e-01, 1.278331849194e-06, 2.4802e+01, 7.2428e-01, - 2DIAGNOSTIC, 26, -4.499994244734e-01, 1.230488063296e-06, 2.6109e+01, 1.3071e+00, - 2DIAGNOSTIC, 27, -4.499994244834e-01, 1.185576844649e-06, 2.8175e+01, 2.0651e+00, - 2DIAGNOSTIC, 28, -4.499994244834e-01, 1.143233460156e-06, 2.8932e+01, 7.5745e-01, - 2DIAGNOSTIC, 29, -4.499994244834e-01, 1.103204323123e-06, 2.9634e+01, 7.0158e-01, - 2DIAGNOSTIC, 30, -4.499994244834e-01, 1.065361031227e-06, 3.0357e+01, 7.2298e-01, - 2DIAGNOSTIC, 31, -4.499994244834e-01, 1.029672245453e-06, 3.1118e+01, 7.6126e-01, - Elapsed time (stage 1): 3.1521e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.229685933343e-01, 1.797693134862e+308, 2.5812e-01, 2.5812e-01, - 1DIAGNOSTIC, 2, -9.375578283307e-01, 1.797693134862e+308, 3.5930e-01, 1.0118e-01, - 1DIAGNOSTIC, 3, -9.473947278734e-01, 1.797693134862e+308, 4.5844e-01, 9.9139e-02, - 1DIAGNOSTIC, 4, -9.537944247735e-01, 1.797693134862e+308, 5.6162e-01, 1.0318e-01, - 1DIAGNOSTIC, 5, -9.582618857804e-01, 1.797693134862e+308, 6.6235e-01, 1.0072e-01, - 1DIAGNOSTIC, 6, -9.615435411389e-01, 1.797693134862e+308, 7.6926e-01, 1.0692e-01, - 1DIAGNOSTIC, 7, -9.643713153203e-01, 1.797693134862e+308, 8.6920e-01, 9.9941e-02, - 1DIAGNOSTIC, 8, -9.665719518681e-01, 1.797693134862e+308, 9.7030e-01, 1.0110e-01, - 1DIAGNOSTIC, 9, -9.680730486036e-01, 1.797693134862e+308, 1.0676e+00, 9.7262e-02, - 1DIAGNOSTIC, 10, -9.686200641178e-01, 2.719172242099e-03, 1.1727e+00, 1.0511e-01, - 1DIAGNOSTIC, 11, -9.687980998487e-01, 1.736460344317e-03, 1.2759e+00, 1.0324e-01, - 1DIAGNOSTIC, 12, -9.690038332598e-01, 1.125975843219e-03, 1.3815e+00, 1.0559e-01, - 1DIAGNOSTIC, 13, -9.689649487892e-01, 7.298762681023e-04, 1.4882e+00, 1.0669e-01, - 1DIAGNOSTIC, 14, -9.690437711616e-01, 4.605740175823e-04, 1.5961e+00, 1.0791e-01, - 1DIAGNOSTIC, 15, -9.689754398073e-01, 2.718149528583e-04, 1.6983e+00, 1.0223e-01, - 1DIAGNOSTIC, 16, -9.689504771791e-01, 1.417782621312e-04, 1.8020e+00, 1.0365e-01, - 1DIAGNOSTIC, 17, -9.689236157184e-01, 6.237589426267e-05, 1.9053e+00, 1.0336e-01, - 1DIAGNOSTIC, 18, -9.689261215444e-01, 2.190582786633e-05, 2.0108e+00, 1.0543e-01, - 1DIAGNOSTIC, 19, -9.688854543794e-01, 6.398082379962e-06, 2.1156e+00, 1.0484e-01, - 1DIAGNOSTIC, 20, -9.688497726966e-01, -4.542827784504e-07, 2.2206e+00, 1.0500e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.287608506221e-01, 1.797693134862e+308, 3.0592e+00, 8.3859e-01, - 1DIAGNOSTIC, 2, -9.324810354729e-01, 1.797693134862e+308, 3.7534e+00, 6.9424e-01, - 1DIAGNOSTIC, 3, -9.365495225937e-01, 1.797693134862e+308, 4.4408e+00, 6.8739e-01, - 1DIAGNOSTIC, 4, -9.400511774848e-01, 1.797693134862e+308, 5.1119e+00, 6.7105e-01, - 1DIAGNOSTIC, 5, -9.426159592581e-01, 1.797693134862e+308, 5.7830e+00, 6.7117e-01, - 1DIAGNOSTIC, 6, -9.451690646766e-01, 1.797693134862e+308, 6.5309e+00, 7.4788e-01, - 1DIAGNOSTIC, 7, -9.474344331685e-01, 1.797693134862e+308, 7.2102e+00, 6.7927e-01, - 1DIAGNOSTIC, 8, -9.493061730748e-01, 1.797693134862e+308, 7.8816e+00, 6.7144e-01, - 1DIAGNOSTIC, 9, -9.509131228990e-01, 1.797693134862e+308, 8.5672e+00, 6.8554e-01, - 1DIAGNOSTIC, 10, -9.521820239811e-01, 1.581679317644e-03, 9.2455e+00, 6.7832e-01, - 1DIAGNOSTIC, 11, -9.532735391237e-01, 1.250863041115e-03, 9.9354e+00, 6.8995e-01, - 1DIAGNOSTIC, 12, -9.542219452862e-01, 9.789752734799e-04, 1.0620e+01, 6.8490e-01, - 1DIAGNOSTIC, 13, -9.550456354246e-01, 7.727864766689e-04, 1.1306e+01, 6.8522e-01, - 1DIAGNOSTIC, 14, -9.557493769410e-01, 6.158024842477e-04, 1.2003e+01, 6.9758e-01, - 1DIAGNOSTIC, 15, -9.563556757598e-01, 4.865952651735e-04, 1.2686e+01, 6.8312e-01, - 1DIAGNOSTIC, 16, -9.568949705163e-01, 3.865507957402e-04, 1.3410e+01, 7.2343e-01, - 1DIAGNOSTIC, 17, -9.573780530794e-01, 3.108838764840e-04, 1.4117e+01, 7.0703e-01, - 1DIAGNOSTIC, 18, -9.578057092897e-01, 2.529396605902e-04, 1.4811e+01, 6.9419e-01, - 1DIAGNOSTIC, 19, -9.581864996608e-01, 2.088616766546e-04, 1.5524e+01, 7.1322e-01, - 1DIAGNOSTIC, 20, -9.585282717546e-01, 1.738070778051e-04, 1.6243e+01, 7.1856e-01, - 1DIAGNOSTIC, 21, -9.588239197115e-01, 1.456036655416e-04, 1.6927e+01, 6.8469e-01, - 1DIAGNOSTIC, 22, -9.590812864780e-01, 1.227246072598e-04, 1.7614e+01, 6.8656e-01, - 1DIAGNOSTIC, 23, -9.593019488004e-01, 1.039184666791e-04, 1.8303e+01, 6.8878e-01, - 1DIAGNOSTIC, 24, -9.594968519439e-01, 8.814139754834e-05, 1.8978e+01, 6.7481e-01, - 1DIAGNOSTIC, 25, -9.596778775091e-01, 7.478021892401e-05, 1.9656e+01, 6.7858e-01, - 1DIAGNOSTIC, 26, -9.598276972934e-01, 6.335659862706e-05, 2.0389e+01, 7.3336e-01, - 1DIAGNOSTIC, 27, -9.599591708310e-01, 5.365019570185e-05, 2.1068e+01, 6.7839e-01, - 1DIAGNOSTIC, 28, -9.600691039265e-01, 4.535718630819e-05, 2.1785e+01, 7.1685e-01, - 1DIAGNOSTIC, 29, -9.601749344976e-01, 3.841120294992e-05, 2.2505e+01, 7.2069e-01, - 1DIAGNOSTIC, 30, -9.602803545010e-01, 3.279483898490e-05, 2.3243e+01, 7.3711e-01, - 1DIAGNOSTIC, 31, -9.603599633216e-01, 2.810074128285e-05, 2.3942e+01, 6.9961e-01, - 1DIAGNOSTIC, 32, -9.604317106473e-01, 2.417143871162e-05, 2.4643e+01, 7.0074e-01, - 1DIAGNOSTIC, 33, -9.604938604273e-01, 2.081123436222e-05, 2.5330e+01, 6.8764e-01, - 1DIAGNOSTIC, 34, -9.605487306284e-01, 1.792572143949e-05, 2.6019e+01, 6.8805e-01, - 1DIAGNOSTIC, 35, -9.606031924848e-01, 1.557136679878e-05, 2.6700e+01, 6.8144e-01, - 1DIAGNOSTIC, 36, -9.606500058258e-01, 1.356054011160e-05, 2.7367e+01, 6.6661e-01, - 1DIAGNOSTIC, 37, -9.606954607650e-01, 1.186393565398e-05, 2.8041e+01, 6.7439e-01, - 1DIAGNOSTIC, 38, -9.607280834943e-01, 1.031251530978e-05, 2.8733e+01, 6.9247e-01, - 1DIAGNOSTIC, 39, -9.607698149202e-01, 9.050833104540e-06, 2.9410e+01, 6.7654e-01, - 1DIAGNOSTIC, 40, -9.608050504817e-01, 8.101423948473e-06, 3.0088e+01, 6.7839e-01, - 1DIAGNOSTIC, 41, -9.608375415627e-01, 7.304425842177e-06, 3.0763e+01, 6.7458e-01, - 1DIAGNOSTIC, 42, -9.608686153220e-01, 6.643303198581e-06, 3.1513e+01, 7.4981e-01, - 1DIAGNOSTIC, 43, -9.609036039833e-01, 6.116804345407e-06, 3.2245e+01, 7.3239e-01, - 1DIAGNOSTIC, 44, -9.609209932866e-01, 5.580547761990e-06, 3.2929e+01, 6.8345e-01, - 1DIAGNOSTIC, 45, -9.609453750679e-01, 5.120629373207e-06, 3.3661e+01, 7.3194e-01, - 1DIAGNOSTIC, 46, -9.609680096850e-01, 4.701820443050e-06, 3.4418e+01, 7.5700e-01, - 1DIAGNOSTIC, 47, -9.609862342926e-01, 4.315872198138e-06, 3.5130e+01, 7.1251e-01, - 1DIAGNOSTIC, 48, -9.610018369867e-01, 3.891326273944e-06, 3.5834e+01, 7.0404e-01, - 1DIAGNOSTIC, 49, -9.610187253156e-01, 3.527943607105e-06, 3.6527e+01, 6.9325e-01, - 1DIAGNOSTIC, 50, -9.610286618606e-01, 3.168904843739e-06, 3.7212e+01, 6.8468e-01, - 1DIAGNOSTIC, 51, -9.610493387790e-01, 2.888135269542e-06, 3.7894e+01, 6.8205e-01, - 1DIAGNOSTIC, 52, -9.610638071088e-01, 2.655654874013e-06, 3.8580e+01, 6.8606e-01, - 1DIAGNOSTIC, 53, -9.610766926666e-01, 2.503290559640e-06, 3.9275e+01, 6.9472e-01, - 1DIAGNOSTIC, 54, -9.610829715018e-01, 2.302420654521e-06, 3.9969e+01, 6.9449e-01, - 1DIAGNOSTIC, 55, -9.610951478175e-01, 2.140669424458e-06, 4.0651e+01, 6.8173e-01, - 1DIAGNOSTIC, 56, -9.611060225438e-01, 2.009716656617e-06, 4.1351e+01, 6.9991e-01, - 1DIAGNOSTIC, 57, -9.611117872675e-01, 1.867460082402e-06, 4.2033e+01, 6.8250e-01, - 1DIAGNOSTIC, 58, -9.611233385974e-01, 1.742787524277e-06, 4.2727e+01, 6.9325e-01, - 1DIAGNOSTIC, 59, -9.611333952671e-01, 1.643001913521e-06, 4.3423e+01, 6.9589e-01, - 1DIAGNOSTIC, 60, -9.611351413135e-01, 1.495820815767e-06, 4.4110e+01, 6.8728e-01, - 1DIAGNOSTIC, 61, -9.611436372868e-01, 1.402125771068e-06, 4.4797e+01, 6.8741e-01, - 1DIAGNOSTIC, 62, -9.611515853824e-01, 1.332708712914e-06, 4.5484e+01, 6.8649e-01, - 1DIAGNOSTIC, 63, -9.611570605015e-01, 1.272391891023e-06, 4.6169e+01, 6.8507e-01, - 1DIAGNOSTIC, 64, -9.611639712361e-01, 1.200241608625e-06, 4.6853e+01, 6.8456e-01, - 1DIAGNOSTIC, 65, -9.611721145339e-01, 1.154907502660e-06, 4.7538e+01, 6.8432e-01, - 1DIAGNOSTIC, 66, -9.611798033298e-01, 1.130086444309e-06, 4.8231e+01, 6.9326e-01, - 1DIAGNOSTIC, 67, -9.611870900909e-01, 1.099911931587e-06, 4.8919e+01, 6.8761e-01, - 1DIAGNOSTIC, 68, -9.611911750082e-01, 1.077693919299e-06, 4.9601e+01, 6.8188e-01, - 1DIAGNOSTIC, 69, -9.611966507861e-01, 1.064809058012e-06, 5.0286e+01, 6.8580e-01, - 1DIAGNOSTIC, 70, -9.612028559592e-01, 1.026955005182e-06, 5.0977e+01, 6.9111e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.141188521025e-01, 1.797693134862e+308, 5.6804e+01, 5.8269e+00, - 1DIAGNOSTIC, 2, -9.174331854373e-01, 1.797693134862e+308, 6.2282e+01, 5.4780e+00, - 1DIAGNOSTIC, 3, -9.212880995511e-01, 1.797693134862e+308, 6.7803e+01, 5.5208e+00, - 1DIAGNOSTIC, 4, -9.244310358137e-01, 1.797693134862e+308, 7.3382e+01, 5.5793e+00, - 1DIAGNOSTIC, 5, -9.269968862883e-01, 1.797693134862e+308, 7.8906e+01, 5.5234e+00, - 1DIAGNOSTIC, 6, -9.291359205512e-01, 1.797693134862e+308, 8.4579e+01, 5.6731e+00, - 1DIAGNOSTIC, 7, -9.309588148438e-01, 1.797693134862e+308, 9.0072e+01, 5.4927e+00, - 1DIAGNOSTIC, 8, -9.325470065826e-01, 1.797693134862e+308, 9.5660e+01, 5.5883e+00, - 1DIAGNOSTIC, 9, -9.339686162932e-01, 1.797693134862e+308, 1.0131e+02, 5.6523e+00, - 1DIAGNOSTIC, 10, -9.352281060870e-01, 1.440489901574e-03, 1.0686e+02, 5.5458e+00, - 1DIAGNOSTIC, 11, -9.361894668659e-01, 1.131765656725e-03, 1.1246e+02, 5.5970e+00, - 1DIAGNOSTIC, 12, -9.370279456879e-01, 8.780445967183e-04, 1.1799e+02, 5.5389e+00, - 1DIAGNOSTIC, 13, -9.377803244231e-01, 6.918038016335e-04, 1.2355e+02, 5.5522e+00, - 1DIAGNOSTIC, 14, -9.384657531506e-01, 5.523452258017e-04, 1.2905e+02, 5.5075e+00, - 1DIAGNOSTIC, 15, -9.389760994272e-01, 4.432722072816e-04, 1.3472e+02, 5.6657e+00, - 1DIAGNOSTIC, 16, -9.394668455718e-01, 3.571579805851e-04, 1.4044e+02, 5.7169e+00, - 1DIAGNOSTIC, 17, -9.399464853916e-01, 2.894541447932e-04, 1.4597e+02, 5.5337e+00, - 1DIAGNOSTIC, 18, -9.404252843960e-01, 2.373296835582e-04, 1.5146e+02, 5.4856e+00, - 1DIAGNOSTIC, 19, -9.409059707580e-01, 1.990020652148e-04, 1.5693e+02, 5.4750e+00, - 1DIAGNOSTIC, 20, -9.413791685113e-01, 1.723247865222e-04, 1.6248e+02, 5.5475e+00, - 1DIAGNOSTIC, 21, -9.418204053172e-01, 1.524219296963e-04, 1.6794e+02, 5.4581e+00, - 1DIAGNOSTIC, 22, -9.422235837828e-01, 1.372200289883e-04, 1.7335e+02, 5.4166e+00, - 1DIAGNOSTIC, 23, -9.425767870344e-01, 1.250710290405e-04, 1.7882e+02, 5.4637e+00, - 1DIAGNOSTIC, 24, -9.428906060185e-01, 1.148815490265e-04, 1.8427e+02, 5.4506e+00, - 1DIAGNOSTIC, 25, -9.431709054176e-01, 1.043477293991e-04, 1.8980e+02, 5.5305e+00, - 1DIAGNOSTIC, 26, -9.434235217065e-01, 9.352031035009e-05, 1.9527e+02, 5.4767e+00, - 1DIAGNOSTIC, 27, -9.436573928198e-01, 8.274194702097e-05, 2.0075e+02, 5.4730e+00, - 1DIAGNOSTIC, 28, -9.438697127353e-01, 7.245301641861e-05, 2.0617e+02, 5.4185e+00, - 1DIAGNOSTIC, 29, -9.440681710785e-01, 6.316870382951e-05, 2.1169e+02, 5.5195e+00, - 1DIAGNOSTIC, 30, -9.442521201004e-01, 5.520775735664e-05, 2.1718e+02, 5.4954e+00, - 1DIAGNOSTIC, 31, -9.444207229112e-01, 4.853455739873e-05, 2.2263e+02, 5.4540e+00, - 1DIAGNOSTIC, 32, -9.445791905678e-01, 4.304169986093e-05, 2.2809e+02, 5.4548e+00, - 1DIAGNOSTIC, 33, -9.447258704718e-01, 3.843509753041e-05, 2.3359e+02, 5.5016e+00, - 1DIAGNOSTIC, 34, -9.448514065361e-01, 3.441448999156e-05, 2.3901e+02, 5.4215e+00, - 1DIAGNOSTIC, 35, -9.449607150898e-01, 3.077965417998e-05, 2.4445e+02, 5.4349e+00, - 1DIAGNOSTIC, 36, -9.450566942555e-01, 2.740785935831e-05, 2.4985e+02, 5.4008e+00, - 1DIAGNOSTIC, 37, -9.451416792670e-01, 2.427562999989e-05, 2.5535e+02, 5.5004e+00, - 1DIAGNOSTIC, 38, -9.452107550200e-01, 2.129388953969e-05, 2.6085e+02, 5.5040e+00, - 1DIAGNOSTIC, 39, -9.452716660084e-01, 1.850763988968e-05, 2.6633e+02, 5.4805e+00, - 1DIAGNOSTIC, 40, -9.453281265507e-01, 1.597477708710e-05, 2.7182e+02, 5.4847e+00, - 1DIAGNOSTIC, 41, -9.453770119677e-01, 1.370383191832e-05, 2.7729e+02, 5.4717e+00, - 1DIAGNOSTIC, 42, -9.454182885674e-01, 1.172845897437e-05, 2.8275e+02, 5.4582e+00, - 1DIAGNOSTIC, 43, -9.454517840373e-01, 1.005160080884e-05, 2.8818e+02, 5.4289e+00, - 1DIAGNOSTIC, 44, -9.454796321327e-01, 8.604904786443e-06, 2.9357e+02, 5.3950e+00, - 1DIAGNOSTIC, 45, -9.455001689335e-01, 7.331456878965e-06, 2.9902e+02, 5.4446e+00, - 1DIAGNOSTIC, 46, -9.455165220607e-01, 6.209290444134e-06, 3.0443e+02, 5.4156e+00, - 1DIAGNOSTIC, 47, -9.455306916670e-01, 5.238577207113e-06, 3.0989e+02, 5.4615e+00, - 1DIAGNOSTIC, 48, -9.455385002578e-01, 4.350512256442e-06, 3.1533e+02, 5.4405e+00, - 1DIAGNOSTIC, 49, -9.455469803560e-01, 3.569252916898e-06, 3.2080e+02, 5.4638e+00, - 1DIAGNOSTIC, 50, -9.455508461706e-01, 2.900017201105e-06, 3.2622e+02, 5.4265e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.076490700021e-01, 1.797693134862e+308, 3.7137e+02, 4.5145e+01, - 1DIAGNOSTIC, 2, -9.087065862138e-01, 1.797693134862e+308, 4.1554e+02, 4.4167e+01, - 1DIAGNOSTIC, 3, -9.099732574662e-01, 1.797693134862e+308, 4.5989e+02, 4.4356e+01, - 1DIAGNOSTIC, 4, -9.111285347616e-01, 1.797693134862e+308, 5.0443e+02, 4.4536e+01, - 1DIAGNOSTIC, 5, -9.121571585478e-01, 1.797693134862e+308, 5.4939e+02, 4.4963e+01, - 1DIAGNOSTIC, 6, -9.131213624072e-01, 1.797693134862e+308, 5.9356e+02, 4.4164e+01, - 1DIAGNOSTIC, 7, -9.140453021134e-01, 1.797693134862e+308, 6.3777e+02, 4.4217e+01, - 1DIAGNOSTIC, 8, -9.149670995322e-01, 1.797693134862e+308, 6.8201e+02, 4.4236e+01, - 1DIAGNOSTIC, 9, -9.158975403603e-01, 1.797693134862e+308, 7.2630e+02, 4.4294e+01, - 1DIAGNOSTIC, 10, -9.168818750335e-01, 6.430234354609e-04, 7.7036e+02, 4.4063e+01, - 1DIAGNOSTIC, 11, -9.178252989687e-01, 5.679802710493e-04, 8.1529e+02, 4.4927e+01, - 1DIAGNOSTIC, 12, -9.189110017605e-01, 5.096529279965e-04, 8.5946e+02, 4.4172e+01, - 1DIAGNOSTIC, 13, -9.198257013679e-01, 4.659957405803e-04, 9.0352e+02, 4.4056e+01, - 1DIAGNOSTIC, 14, -9.208183881243e-01, 4.336660787831e-04, 9.4782e+02, 4.4295e+01, - 1DIAGNOSTIC, 15, -9.217555408928e-01, 4.064816697393e-04, 9.9210e+02, 4.4281e+01, - 1DIAGNOSTIC, 16, -9.225496261750e-01, 3.792946346945e-04, 1.0364e+03, 4.4266e+01, - 1DIAGNOSTIC, 17, -9.233023230372e-01, 3.508414326259e-04, 1.0810e+03, 4.4591e+01, - 1DIAGNOSTIC, 18, -9.240094259993e-01, 3.210733914337e-04, 1.1253e+03, 4.4317e+01, - 1DIAGNOSTIC, 19, -9.247004858890e-01, 2.909918928084e-04, 1.1698e+03, 4.4514e+01, - 1DIAGNOSTIC, 20, -9.252500596744e-01, 2.605116752694e-04, 1.2141e+03, 4.4357e+01, - Elapsed time (stage 2): 1215 - - -Total elapsed time: 1272 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:24 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:24 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:25 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:30 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:33 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:33 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7276 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:33 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:36 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:36 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7327 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:36 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/anat/sub-PNC001_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:39 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:39 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7370 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:39 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7375 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:40 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:43 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:45 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:45 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:46 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:47 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:49 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:49 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:50 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:51 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:53 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:53 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/surf/sub-PNC001_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:27:54 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:15 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02/sub-PNC001_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC001 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:15 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC001 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:16 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC001 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:16 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8009 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:18 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:18 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc/sub-PNC001_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/xfm/sub-PNC001_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8040 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:19 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:20 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC001_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 74.333 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/logs/proc_func_18-03-2024-5101.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:24 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC001 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-02/QC/sub-PNC001_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18784_micapipe_proc-func_sub-PNC001_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC001* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 74.383 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC001_ses-02 -========================reprocessing without filter=================== -sub-PNC001_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC001 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC001 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC001 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC001 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:29 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:28:29 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-1_bold.nii.gz is 38.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:30:39 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:32:48 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:33:02 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.35 (mm) at sub-brick 114 -++ Max delta displ in automask = 0.29 (mm) at sub-brick 189 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:46:24 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:46:50 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-2_bold.nii.gz is 38.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:49:05 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:51:37 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC001/ses-03/func/sub-PNC001_ses-03_task-rest_echo-3_bold.nii.gz is 38.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:53:59 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.731 -3.215 2.300 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 83.5 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.878 -4.386 4.300 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 97.6 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 01:59:49 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:00:53 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x56469608da50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [108.704, 59.2681, -109.004] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564695f04730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5646960a4350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x564696094600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.3624, 122.53, -125.641] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564696096e40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5646968a0f50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x56469689f270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [108.704, 59.2681, -109.004] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564696093640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5646973cb1c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x56469689ea00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.3624, 122.53, -125.641] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56469609a390) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x564697bc5300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.520512414807e-01, 1.797693134862e+308, 6.9439e-02, 6.9438e-02, - 2DIAGNOSTIC, 2, -7.542820326588e-01, 1.797693134862e+308, 7.1835e-02, 2.3959e-03, - 2DIAGNOSTIC, 3, -7.575725197056e-01, 1.797693134862e+308, 7.5384e-02, 3.5489e-03, - 2DIAGNOSTIC, 4, -7.657059549845e-01, 1.797693134862e+308, 7.8513e-02, 3.1290e-03, - 2DIAGNOSTIC, 5, -7.753983641018e-01, 1.797693134862e+308, 8.1005e-02, 2.4920e-03, - 2DIAGNOSTIC, 6, -7.852219943384e-01, 1.797693134862e+308, 8.3866e-02, 2.8610e-03, - 2DIAGNOSTIC, 7, -7.906619372037e-01, 1.797693134862e+308, 8.6488e-02, 2.6221e-03, - 2DIAGNOSTIC, 8, -8.199074174899e-01, 1.797693134862e+308, 9.2953e-02, 6.4650e-03, - 2DIAGNOSTIC, 9, -8.452431750762e-01, 1.797693134862e+308, 9.7346e-02, 4.3929e-03, - 2DIAGNOSTIC, 10, -8.573764149466e-01, 8.699461758847e-03, 1.0335e-01, 6.0050e-03, - 2DIAGNOSTIC, 11, -8.597115228211e-01, 8.764244626052e-03, 1.0675e-01, 3.3960e-03, - 2DIAGNOSTIC, 12, -8.739597049050e-01, 8.523370432398e-03, 1.0889e-01, 2.1439e-03, - 2DIAGNOSTIC, 13, -8.748709326952e-01, 7.651164961300e-03, 1.1196e-01, 3.0711e-03, - 2DIAGNOSTIC, 14, -8.650803240262e-01, 6.174545827258e-03, 1.1485e-01, 2.8892e-03, - 2DIAGNOSTIC, 15, -8.797751850128e-01, 4.916838518680e-03, 1.1717e-01, 2.3220e-03, - 2DIAGNOSTIC, 16, -8.849292750352e-01, 3.700525828917e-03, 1.2139e-01, 4.2150e-03, - 2DIAGNOSTIC, 17, -8.918247374296e-01, 2.532893826082e-03, 1.2795e-01, 6.5649e-03, - 2DIAGNOSTIC, 18, -9.063794420409e-01, 2.095074905046e-03, 1.3510e-01, 7.1449e-03, - 2DIAGNOSTIC, 19, -9.075650437072e-01, 1.985699558264e-03, 1.3871e-01, 3.6130e-03, - 2DIAGNOSTIC, 20, -9.120765950054e-01, 1.988857250923e-03, 1.4531e-01, 6.5989e-03, - 2DIAGNOSTIC, 21, -9.168605293425e-01, 1.911623925166e-03, 1.4960e-01, 4.2861e-03, - 2DIAGNOSTIC, 22, -9.328713163091e-01, 2.122666109513e-03, 1.5981e-01, 1.0218e-02, - 2DIAGNOSTIC, 23, -9.378318765535e-01, 2.199943332659e-03, 1.6701e-01, 7.2000e-03, - 2DIAGNOSTIC, 24, -9.404972268664e-01, 1.962927774481e-03, 1.7058e-01, 3.5701e-03, - 2DIAGNOSTIC, 25, -9.411553000272e-01, 1.771080337364e-03, 1.7535e-01, 4.7660e-03, - 2DIAGNOSTIC, 26, -9.412373478496e-01, 1.495227635809e-03, 1.7876e-01, 3.4151e-03, - 2DIAGNOSTIC, 27, -9.424248812513e-01, 1.192752864663e-03, 1.8306e-01, 4.2961e-03, - 2DIAGNOSTIC, 28, -9.425702607516e-01, 9.731018396953e-04, 1.8538e-01, 2.3150e-03, - 2DIAGNOSTIC, 29, -9.438824777701e-01, 7.080335205806e-04, 1.8836e-01, 2.9800e-03, - 2DIAGNOSTIC, 30, -9.443010478188e-01, 4.501275816054e-04, 1.9175e-01, 3.3948e-03, - 2DIAGNOSTIC, 31, -9.444235490098e-01, 2.155395039684e-04, 1.9623e-01, 4.4839e-03, - 2DIAGNOSTIC, 32, -9.434834963756e-01, 1.283066438197e-04, 1.9994e-01, 3.7081e-03, - 2DIAGNOSTIC, 33, -9.424674321892e-01, 7.297868937606e-05, 2.0361e-01, 3.6638e-03, - 2DIAGNOSTIC, 34, -9.425351809301e-01, 4.025757249006e-05, 2.0525e-01, 1.6420e-03, - 2DIAGNOSTIC, 35, -9.428251758695e-01, 1.429004882443e-05, 2.0682e-01, 1.5702e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.199024648572e-01, 1.797693134862e+308, 3.0673e-01, 9.9909e-02, - 2DIAGNOSTIC, 2, -5.206968349230e-01, 1.797693134862e+308, 3.1388e-01, 7.1549e-03, - 2DIAGNOSTIC, 3, -5.236769280076e-01, 1.797693134862e+308, 3.2118e-01, 7.2930e-03, - 2DIAGNOSTIC, 4, -5.273889361588e-01, 1.797693134862e+308, 3.2963e-01, 8.4550e-03, - 2DIAGNOSTIC, 5, -5.301132095043e-01, 1.797693134862e+308, 3.4143e-01, 1.1802e-02, - 2DIAGNOSTIC, 6, -5.330629193050e-01, 1.797693134862e+308, 3.5441e-01, 1.2977e-02, - 2DIAGNOSTIC, 7, -5.434115842886e-01, 1.797693134862e+308, 3.6509e-01, 1.0681e-02, - 2DIAGNOSTIC, 8, -5.506148129883e-01, 1.797693134862e+308, 3.7590e-01, 1.0809e-02, - 2DIAGNOSTIC, 9, -5.545137565256e-01, 1.797693134862e+308, 3.8289e-01, 6.9890e-03, - 2DIAGNOSTIC, 10, -5.556751844097e-01, 4.892684817204e-03, 3.9070e-01, 7.8142e-03, - 2DIAGNOSTIC, 11, -5.576373039754e-01, 4.576833277751e-03, 3.9722e-01, 6.5200e-03, - 2DIAGNOSTIC, 12, -5.639946319809e-01, 4.208098839023e-03, 4.0166e-01, 4.4420e-03, - 2DIAGNOSTIC, 13, -5.676479914255e-01, 3.771938255181e-03, 4.0623e-01, 4.5681e-03, - 2DIAGNOSTIC, 14, -5.716946903428e-01, 3.348557099651e-03, 4.1078e-01, 4.5488e-03, - 2DIAGNOSTIC, 15, -5.778394624709e-01, 2.990395296279e-03, 4.1639e-01, 5.6119e-03, - 2DIAGNOSTIC, 16, -5.839604246736e-01, 2.689323041577e-03, 4.1969e-01, 3.2940e-03, - 2DIAGNOSTIC, 17, -5.852805561259e-01, 2.523843635587e-03, 4.2247e-01, 2.7828e-03, - 2DIAGNOSTIC, 18, -5.912384338209e-01, 2.519113154476e-03, 4.2491e-01, 2.4409e-03, - 2DIAGNOSTIC, 19, -6.062823314153e-01, 2.787051516396e-03, 4.3066e-01, 5.7480e-03, - 2DIAGNOSTIC, 20, -6.064118091035e-01, 2.790914349464e-03, 4.3308e-01, 2.4250e-03, - 2DIAGNOSTIC, 21, -6.071334707170e-01, 2.601917980207e-03, 4.3563e-01, 2.5489e-03, - 2DIAGNOSTIC, 22, -6.082441739732e-01, 2.365380019877e-03, 4.3791e-01, 2.2769e-03, - 2DIAGNOSTIC, 23, -6.095655402232e-01, 2.036447192408e-03, 4.4759e-01, 9.6812e-03, - 2DIAGNOSTIC, 24, -6.114954811045e-01, 1.663734895930e-03, 4.6881e-01, 2.1218e-02, - 2DIAGNOSTIC, 25, -6.123898122723e-01, 1.305188597724e-03, 4.7551e-01, 6.7010e-03, - 2DIAGNOSTIC, 26, -6.129868813494e-01, 9.880678579319e-04, 4.8947e-01, 1.3960e-02, - 2DIAGNOSTIC, 27, -6.141683524121e-01, 6.496177151698e-04, 4.9556e-01, 6.0861e-03, - 2DIAGNOSTIC, 28, -6.162359983982e-01, 4.098102586147e-04, 5.0154e-01, 5.9798e-03, - 2DIAGNOSTIC, 29, -6.194837504581e-01, 4.599191060359e-04, 5.0741e-01, 5.8751e-03, - 2DIAGNOSTIC, 30, -6.253911633870e-01, 5.611718212650e-04, 5.1471e-01, 7.2961e-03, - 2DIAGNOSTIC, 31, -6.281634006144e-01, 6.562011699678e-04, 5.2402e-01, 9.3131e-03, - 2DIAGNOSTIC, 32, -6.314911004007e-01, 7.509285936574e-04, 5.2988e-01, 5.8560e-03, - 2DIAGNOSTIC, 33, -6.429546121884e-01, 9.564007085665e-04, 5.4483e-01, 1.4949e-02, - 2DIAGNOSTIC, 34, -6.475215738227e-01, 1.146206795957e-03, 5.5197e-01, 7.1428e-03, - 2DIAGNOSTIC, 35, -6.535816673167e-01, 1.311131943767e-03, 5.5749e-01, 5.5170e-03, - 2DIAGNOSTIC, 36, -6.603593840475e-01, 1.440658938091e-03, 5.6168e-01, 4.1921e-03, - 2DIAGNOSTIC, 37, -6.673741926617e-01, 1.530948185462e-03, 5.6534e-01, 3.6640e-03, - 2DIAGNOSTIC, 38, -6.707534123514e-01, 1.536435936137e-03, 5.8383e-01, 1.8489e-02, - 2DIAGNOSTIC, 39, -6.720088087046e-01, 1.449339301652e-03, 5.9494e-01, 1.1107e-02, - 2DIAGNOSTIC, 40, -6.744675322199e-01, 1.330454028472e-03, 6.0638e-01, 1.1439e-02, - 2DIAGNOSTIC, 41, -6.768853313986e-01, 1.151108829724e-03, 6.2095e-01, 1.4576e-02, - 2DIAGNOSTIC, 42, -6.790005993605e-01, 9.292358598395e-04, 6.4799e-01, 2.7041e-02, - 2DIAGNOSTIC, 43, -6.796569184913e-01, 7.632963225652e-04, 6.6627e-01, 1.8280e-02, - 2DIAGNOSTIC, 44, -6.796203552820e-01, 5.819006793803e-04, 6.7697e-01, 1.0697e-02, - 2DIAGNOSTIC, 45, -6.798173910989e-01, 4.186900730706e-04, 6.8416e-01, 7.1869e-03, - 2DIAGNOSTIC, 46, -6.801778687979e-01, 2.942039114445e-04, 6.9132e-01, 7.1580e-03, - 2DIAGNOSTIC, 47, -6.805391208138e-01, 2.199139265639e-04, 6.9521e-01, 3.8941e-03, - 2DIAGNOSTIC, 48, -6.810940737207e-01, 1.664148041705e-04, 6.9811e-01, 2.8999e-03, - 2DIAGNOSTIC, 49, -6.812503187978e-01, 1.127504636821e-04, 7.0072e-01, 2.6078e-03, - 2DIAGNOSTIC, 50, -6.811639928285e-01, 7.247709861050e-05, 7.0338e-01, 2.6591e-03, - 2DIAGNOSTIC, 51, -6.811801630343e-01, 4.872503762389e-05, 7.0569e-01, 2.3181e-03, - 2DIAGNOSTIC, 52, -6.811940766503e-01, 4.006689111664e-05, 7.0798e-01, 2.2860e-03, - 2DIAGNOSTIC, 53, -6.812068600568e-01, 3.378092119222e-05, 7.1018e-01, 2.2039e-03, - 2DIAGNOSTIC, 54, -6.812247086722e-01, 2.442097521916e-05, 7.1236e-01, 2.1801e-03, - 2DIAGNOSTIC, 55, -6.812494169282e-01, 1.503812946863e-05, 7.1442e-01, 2.0549e-03, - 2DIAGNOSTIC, 56, -6.813692913161e-01, 8.559995729449e-06, 7.2951e-01, 1.5088e-02, - 2DIAGNOSTIC, 57, -6.813815449476e-01, 4.416899038823e-06, 7.4843e-01, 1.8922e-02, - 2DIAGNOSTIC, 58, -6.813877118367e-01, 4.449609569458e-06, 7.6033e-01, 1.1897e-02, - 2DIAGNOSTIC, 59, -6.815838340926e-01, 6.867591279165e-06, 7.8082e-01, 2.0494e-02, - 2DIAGNOSTIC, 60, -6.817167510359e-01, 8.899760656957e-06, 8.0264e-01, 2.1815e-02, - 2DIAGNOSTIC, 61, -6.817222026044e-01, 1.019526321618e-05, 8.1800e-01, 1.5362e-02, - 2DIAGNOSTIC, 62, -6.816582977888e-01, 1.018514288705e-05, 8.2544e-01, 7.4420e-03, - 2DIAGNOSTIC, 63, -6.817587361120e-01, 1.009959614515e-05, 8.3298e-01, 7.5431e-03, - 2DIAGNOSTIC, 64, -6.817696966458e-01, 9.256683963274e-06, 8.4030e-01, 7.3168e-03, - 2DIAGNOSTIC, 65, -6.818138857312e-01, 8.038388403294e-06, 8.4235e-01, 2.0549e-03, - 2DIAGNOSTIC, 66, -6.816722944175e-01, 6.010318439432e-06, 8.4447e-01, 2.1160e-03, - 2DIAGNOSTIC, 67, -6.816337854625e-01, 3.408769676316e-06, 8.4663e-01, 2.1620e-03, - 2DIAGNOSTIC, 68, -6.822714390199e-01, 4.838681481011e-06, 8.4904e-01, 2.4049e-03, - 2DIAGNOSTIC, 69, -6.833627976390e-01, 1.402447139863e-05, 8.5204e-01, 3.0048e-03, - 2DIAGNOSTIC, 70, -6.845145579992e-01, 2.971466865018e-05, 8.5456e-01, 2.5129e-03, - 2DIAGNOSTIC, 71, -6.846823400708e-01, 4.318264295783e-05, 8.5681e-01, 2.2531e-03, - 2DIAGNOSTIC, 72, -6.846865339314e-01, 5.190804848081e-05, 8.7092e-01, 1.4114e-02, - 2DIAGNOSTIC, 73, -6.847682659661e-01, 5.655990488362e-05, 8.7610e-01, 5.1730e-03, - 2DIAGNOSTIC, 74, -6.848214645483e-01, 5.588636434625e-05, 8.7934e-01, 3.2430e-03, - 2DIAGNOSTIC, 75, -6.849060629420e-01, 5.059240107072e-05, 8.8228e-01, 2.9421e-03, - 2DIAGNOSTIC, 76, -6.848699024944e-01, 3.968128237161e-05, 9.0504e-01, 2.2764e-02, - 2DIAGNOSTIC, 77, -6.849366352524e-01, 2.554428685634e-05, 9.0932e-01, 4.2791e-03, - 2DIAGNOSTIC, 78, -6.849757157658e-01, 1.314099052532e-05, 9.1512e-01, 5.7979e-03, - 2DIAGNOSTIC, 79, -6.850184514788e-01, 6.049047980197e-06, 9.2946e-01, 1.4336e-02, - 2DIAGNOSTIC, 80, -6.850435514059e-01, 5.119884892914e-06, 9.3683e-01, 7.3700e-03, - 2DIAGNOSTIC, 81, -6.850517024525e-01, 4.739146373714e-06, 9.4899e-01, 1.2158e-02, - 2DIAGNOSTIC, 82, -6.850553129074e-01, 3.989905278990e-06, 9.5475e-01, 5.7650e-03, - 2DIAGNOSTIC, 83, -6.850680400608e-01, 3.410034944838e-06, 9.5756e-01, 2.8050e-03, - 2DIAGNOSTIC, 84, -6.851938477527e-01, 3.483924750343e-06, 9.6030e-01, 2.7409e-03, - 2DIAGNOSTIC, 85, -6.851987972109e-01, 3.717016661131e-06, 9.6698e-01, 6.6800e-03, - 2DIAGNOSTIC, 86, -6.851987972102e-01, 3.440866454393e-06, 9.6900e-01, 2.0239e-03, - 2DIAGNOSTIC, 87, -6.851987972410e-01, 3.225231731687e-06, 9.7097e-01, 1.9720e-03, - 2DIAGNOSTIC, 88, -6.851987972930e-01, 2.929887881763e-06, 9.7310e-01, 2.1269e-03, - 2DIAGNOSTIC, 89, -6.851987973807e-01, 2.593952774528e-06, 9.8707e-01, 1.3972e-02, - 2DIAGNOSTIC, 90, -6.851987975284e-01, 2.172358659935e-06, 9.9712e-01, 1.0051e-02, - 2DIAGNOSTIC, 91, -6.851987977760e-01, 1.636509484922e-06, 1.0022e+00, 5.0571e-03, - 2DIAGNOSTIC, 92, -6.851987981887e-01, 1.013907363722e-06, 1.0085e+00, 6.3581e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.219573346791e-01, 1.797693134862e+308, 1.1373e+00, 1.2876e-01, - 2DIAGNOSTIC, 2, -5.230755050195e-01, 1.797693134862e+308, 1.1543e+00, 1.6980e-02, - 2DIAGNOSTIC, 3, -5.250766049580e-01, 1.797693134862e+308, 1.1767e+00, 2.2419e-02, - 2DIAGNOSTIC, 4, -5.277000094231e-01, 1.797693134862e+308, 1.1962e+00, 1.9539e-02, - 2DIAGNOSTIC, 5, -5.299436168027e-01, 1.797693134862e+308, 1.2294e+00, 3.3202e-02, - 2DIAGNOSTIC, 6, -5.317777422062e-01, 1.797693134862e+308, 1.2456e+00, 1.6143e-02, - 2DIAGNOSTIC, 7, -5.324057865804e-01, 1.797693134862e+308, 1.2835e+00, 3.7879e-02, - 2DIAGNOSTIC, 8, -5.327761655318e-01, 1.797693134862e+308, 1.3359e+00, 5.2477e-02, - 2DIAGNOSTIC, 9, -5.327776583395e-01, 1.797693134862e+308, 1.3545e+00, 1.8597e-02, - 2DIAGNOSTIC, 10, -5.329537021572e-01, 1.473981011039e-03, 1.3919e+00, 3.7353e-02, - 2DIAGNOSTIC, 11, -5.329875093433e-01, 1.066089818254e-03, 1.4241e+00, 3.2173e-02, - 2DIAGNOSTIC, 12, -5.329944708478e-01, 6.813264793172e-04, 1.4553e+00, 3.1273e-02, - 2DIAGNOSTIC, 13, -5.330062022053e-01, 3.769023514504e-04, 1.4885e+00, 3.3218e-02, - 2DIAGNOSTIC, 14, -5.330662628301e-01, 1.836609011469e-04, 1.5076e+00, 1.9045e-02, - 2DIAGNOSTIC, 15, -5.331282217745e-01, 8.057238790656e-05, 1.5396e+00, 3.2011e-02, - 2DIAGNOSTIC, 16, -5.332164407071e-01, 4.707927738495e-05, 1.5638e+00, 2.4201e-02, - 2DIAGNOSTIC, 17, -5.333819482445e-01, 3.811561316866e-05, 1.5866e+00, 2.2772e-02, - 2DIAGNOSTIC, 18, -5.339133756946e-01, 5.361040861417e-05, 1.6342e+00, 4.7638e-02, - 2DIAGNOSTIC, 19, -5.341794990305e-01, 6.970408197513e-05, 1.6679e+00, 3.3691e-02, - 2DIAGNOSTIC, 20, -5.342378148144e-01, 8.410749650085e-05, 1.6898e+00, 2.1873e-02, - 2DIAGNOSTIC, 21, -5.342826705963e-01, 9.167417089583e-05, 1.7297e+00, 3.9898e-02, - 2DIAGNOSTIC, 22, -5.343959600027e-01, 9.305661322778e-05, 1.7526e+00, 2.2928e-02, - 2DIAGNOSTIC, 23, -5.350100992118e-01, 1.000153351756e-04, 1.7921e+00, 3.9543e-02, - 2DIAGNOSTIC, 24, -5.352714712462e-01, 1.038537904679e-04, 1.8182e+00, 2.6077e-02, - 2DIAGNOSTIC, 25, -5.353313359328e-01, 1.005274043176e-04, 1.8470e+00, 2.8817e-02, - 2DIAGNOSTIC, 26, -5.353653275644e-01, 9.096628374824e-05, 1.9042e+00, 5.7113e-02, - 2DIAGNOSTIC, 27, -5.353582107504e-01, 7.657313393464e-05, 1.9448e+00, 4.0636e-02, - 2DIAGNOSTIC, 28, -5.353620087539e-01, 6.599820211570e-05, 1.9671e+00, 2.2349e-02, - 2DIAGNOSTIC, 29, -5.353505465796e-01, 5.461231078891e-05, 1.9793e+00, 1.2145e-02, - 2DIAGNOSTIC, 30, -5.353561194972e-01, 4.021393197616e-05, 2.0015e+00, 2.2187e-02, - 2DIAGNOSTIC, 31, -5.353577744912e-01, 2.397235853761e-05, 2.0308e+00, 2.9345e-02, - 2DIAGNOSTIC, 32, -5.353603920321e-01, 8.281942891791e-06, 2.0897e+00, 5.8845e-02, - 2DIAGNOSTIC, 33, -5.353650442914e-01, 2.759341172026e-06, 2.1131e+00, 2.3418e-02, - 2DIAGNOSTIC, 34, -5.353726413795e-01, 1.591555404176e-06, 2.1567e+00, 4.3614e-02, - 2DIAGNOSTIC, 35, -5.353886105323e-01, 1.566488073219e-06, 2.1995e+00, 4.2818e-02, - 2DIAGNOSTIC, 36, -5.354050249408e-01, 2.223063009961e-06, 2.2428e+00, 4.3337e-02, - 2DIAGNOSTIC, 37, -5.354355858231e-01, 3.049271071483e-06, 2.2563e+00, 1.3447e-02, - 2DIAGNOSTIC, 38, -5.355859413427e-01, 5.784602465263e-06, 2.2720e+00, 1.5704e-02, - 2DIAGNOSTIC, 39, -5.356467225336e-01, 8.527698697240e-06, 2.3145e+00, 4.2516e-02, - 2DIAGNOSTIC, 40, -5.357109842019e-01, 1.133199538479e-05, 2.3828e+00, 6.8289e-02, - 2DIAGNOSTIC, 41, -5.358560800323e-01, 1.491405119458e-05, 2.4046e+00, 2.1791e-02, - 2DIAGNOSTIC, 42, -5.361198794776e-01, 2.031284440181e-05, 2.4244e+00, 1.9797e-02, - 2DIAGNOSTIC, 43, -5.365841955965e-01, 2.930974961637e-05, 2.4570e+00, 3.2571e-02, - 2DIAGNOSTIC, 44, -5.368856345236e-01, 3.879283045983e-05, 2.4846e+00, 2.7684e-02, - 2DIAGNOSTIC, 45, -5.371233229061e-01, 4.723422412226e-05, 2.5062e+00, 2.1596e-02, - 2DIAGNOSTIC, 46, -5.371851157115e-01, 5.179100448023e-05, 2.5177e+00, 1.1492e-02, - 2DIAGNOSTIC, 47, -5.371950444476e-01, 5.168344015703e-05, 2.5387e+00, 2.0970e-02, - 2DIAGNOSTIC, 48, -5.372042351318e-01, 4.841886410038e-05, 2.5928e+00, 5.4136e-02, - 2DIAGNOSTIC, 49, -5.372017474868e-01, 4.131787039077e-05, 2.6271e+00, 3.4270e-02, - 2DIAGNOSTIC, 50, -5.372387925649e-01, 3.170001940355e-05, 2.6540e+00, 2.6886e-02, - 2DIAGNOSTIC, 51, -5.372285450729e-01, 2.089093590006e-05, 2.6854e+00, 3.1411e-02, - 2DIAGNOSTIC, 52, -5.372219290851e-01, 1.113140069772e-05, 2.7050e+00, 1.9617e-02, - 2DIAGNOSTIC, 53, -5.372366196290e-01, 5.498886584250e-06, 2.7269e+00, 2.1827e-02, - 2DIAGNOSTIC, 54, -5.372562128361e-01, 2.702974780631e-06, 2.7594e+00, 3.2520e-02, - 2DIAGNOSTIC, 55, -5.372662831376e-01, 2.178068344173e-06, 2.7790e+00, 1.9658e-02, - 2DIAGNOSTIC, 56, -5.372688032866e-01, 2.129813801540e-06, 2.8093e+00, 3.0320e-02, - 2DIAGNOSTIC, 57, -5.372785763281e-01, 2.124538996489e-06, 2.8359e+00, 2.6597e-02, - 2DIAGNOSTIC, 58, -5.372905674074e-01, 2.163096241490e-06, 2.8803e+00, 4.4382e-02, - 2DIAGNOSTIC, 59, -5.372567743732e-01, 1.701260534639e-06, 2.9041e+00, 2.3742e-02, - 2DIAGNOSTIC, 60, -5.372714763266e-01, 1.615000719987e-06, 2.9364e+00, 3.2349e-02, - 2DIAGNOSTIC, 61, -5.372727292398e-01, 1.348538768008e-06, 2.9655e+00, 2.9124e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.489503279160e-01, 1.797693134862e+308, 3.2880e+00, 3.2247e-01, - Elapsed time (stage 0): 3.3759e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.518923823222e-01, 1.797693134862e+308, 8.9200e-02, 8.9200e-02, - 2DIAGNOSTIC, 2, -9.557558176902e-01, 1.797693134862e+308, 9.3001e-02, 3.8011e-03, - 2DIAGNOSTIC, 3, -9.611358086316e-01, 1.797693134862e+308, 9.7724e-02, 4.7231e-03, - 2DIAGNOSTIC, 4, -9.664009438013e-01, 1.797693134862e+308, 1.0227e-01, 4.5450e-03, - 2DIAGNOSTIC, 5, -9.717158656501e-01, 1.797693134862e+308, 1.0715e-01, 4.8759e-03, - 2DIAGNOSTIC, 6, -9.836064758128e-01, 1.797693134862e+308, 1.1201e-01, 4.8680e-03, - 2DIAGNOSTIC, 7, -9.882822563528e-01, 1.797693134862e+308, 1.3136e-01, 1.9342e-02, - 2DIAGNOSTIC, 8, -9.971592924638e-01, 1.797693134862e+308, 1.3980e-01, 8.4419e-03, - 2DIAGNOSTIC, 9, -9.979678469603e-01, 1.797693134862e+308, 1.4468e-01, 4.8859e-03, - 2DIAGNOSTIC, 10, -1.002938130248e+00, 3.648397766226e-03, 1.5161e-01, 6.9299e-03, - 2DIAGNOSTIC, 11, -1.012308562076e+00, 3.371653627164e-03, 1.5394e-01, 2.3260e-03, - 2DIAGNOSTIC, 12, -1.021454363252e+00, 3.143418238440e-03, 1.5588e-01, 1.9431e-03, - 2DIAGNOSTIC, 13, -1.024842951030e+00, 2.859316640882e-03, 1.5735e-01, 1.4670e-03, - 2DIAGNOSTIC, 14, -1.026303848496e+00, 2.499540794408e-03, 1.5876e-01, 1.4100e-03, - 2DIAGNOSTIC, 15, -1.028515918145e+00, 2.103141408925e-03, 1.7026e-01, 1.1501e-02, - 2DIAGNOSTIC, 16, -1.029804959510e+00, 1.797050446585e-03, 1.7723e-01, 6.9692e-03, - 2DIAGNOSTIC, 17, -1.030175733187e+00, 1.441920328210e-03, 1.8488e-01, 7.6520e-03, - 2DIAGNOSTIC, 18, -1.029693118634e+00, 1.129530032531e-03, 1.8989e-01, 5.0130e-03, - 2DIAGNOSTIC, 19, -1.030341333240e+00, 7.700954396224e-04, 1.9572e-01, 5.8250e-03, - 2DIAGNOSTIC, 20, -1.030544465922e+00, 4.472896991156e-04, 2.0143e-01, 5.7080e-03, - 2DIAGNOSTIC, 21, -1.029633748904e+00, 2.255451599427e-04, 2.0718e-01, 5.7521e-03, - 2DIAGNOSTIC, 22, -1.030392796406e+00, 1.307701351245e-04, 2.1508e-01, 7.8988e-03, - 2DIAGNOSTIC, 23, -1.030545626908e+00, 7.563142386154e-05, 2.2242e-01, 7.3409e-03, - 2DIAGNOSTIC, 24, -1.035386170926e+00, 9.162084559181e-05, 2.2856e-01, 6.1409e-03, - 2DIAGNOSTIC, 25, -1.036393964378e+00, 1.322520918737e-04, 2.3562e-01, 7.0579e-03, - 2DIAGNOSTIC, 26, -1.039178199696e+00, 2.018770866184e-04, 2.4244e-01, 6.8181e-03, - 2DIAGNOSTIC, 27, -1.039084712176e+00, 2.504866107902e-04, 2.4834e-01, 5.9030e-03, - 2DIAGNOSTIC, 28, -1.038724987469e+00, 2.635705021448e-04, 2.5722e-01, 8.8849e-03, - 2DIAGNOSTIC, 29, -1.042207415215e+00, 2.905731459387e-04, 2.6240e-01, 5.1801e-03, - 2DIAGNOSTIC, 30, -1.045378381582e+00, 3.188283834056e-04, 2.6807e-01, 5.6639e-03, - 2DIAGNOSTIC, 31, -1.046161914604e+00, 3.135861148945e-04, 2.7331e-01, 5.2450e-03, - 2DIAGNOSTIC, 32, -1.048204277466e+00, 3.047576467799e-04, 2.8069e-01, 7.3769e-03, - 2DIAGNOSTIC, 33, -1.050811758812e+00, 2.903366038386e-04, 2.8363e-01, 2.9392e-03, - 2DIAGNOSTIC, 34, -1.050838772107e+00, 2.884780882966e-04, 2.8547e-01, 1.8449e-03, - 2DIAGNOSTIC, 35, -1.052453702666e+00, 2.795909278021e-04, 2.8706e-01, 1.5900e-03, - 2DIAGNOSTIC, 36, -1.053396923489e+00, 2.737368508752e-04, 2.8867e-01, 1.6091e-03, - 2DIAGNOSTIC, 37, -1.055901885483e+00, 2.607726671080e-04, 2.9050e-01, 1.8249e-03, - 2DIAGNOSTIC, 38, -1.056745891755e+00, 2.263394726523e-04, 2.9200e-01, 1.5020e-03, - 2DIAGNOSTIC, 39, -1.055702787520e+00, 1.893432485845e-04, 2.9355e-01, 1.5490e-03, - 2DIAGNOSTIC, 40, -1.056016840870e+00, 1.611453637764e-04, 2.9487e-01, 1.3201e-03, - 2DIAGNOSTIC, 41, -1.058816031188e+00, 1.428713469423e-04, 2.9621e-01, 1.3409e-03, - 2DIAGNOSTIC, 42, -1.065754645266e+00, 1.699443020501e-04, 2.9781e-01, 1.5972e-03, - 2DIAGNOSTIC, 43, -1.077933085766e+00, 2.737862805755e-04, 3.0023e-01, 2.4240e-03, - 2DIAGNOSTIC, 44, -1.081967164628e+00, 3.708449714814e-04, 3.0159e-01, 1.3611e-03, - 2DIAGNOSTIC, 45, -1.082883417238e+00, 4.444584986050e-04, 3.1570e-01, 1.4108e-02, - 2DIAGNOSTIC, 46, -1.084086499386e+00, 4.855637153510e-04, 3.1742e-01, 1.7180e-03, - 2DIAGNOSTIC, 47, -1.086660665710e+00, 5.072672000425e-04, 3.2590e-01, 8.4801e-03, - 2DIAGNOSTIC, 48, -1.087241175088e+00, 4.865071097784e-04, 3.3657e-01, 1.0667e-02, - 2DIAGNOSTIC, 49, -1.087623949722e+00, 4.167367200027e-04, 3.4362e-01, 7.0531e-03, - 2DIAGNOSTIC, 50, -1.087880985461e+00, 3.143202697308e-04, 3.4662e-01, 3.0041e-03, - 2DIAGNOSTIC, 51, -1.088294576278e+00, 2.032885296104e-04, 3.4933e-01, 2.7039e-03, - 2DIAGNOSTIC, 52, -1.090819896734e+00, 1.254210512019e-04, 3.5471e-01, 5.3842e-03, - 2DIAGNOSTIC, 53, -1.091956698876e+00, 1.066032756837e-04, 3.5843e-01, 3.7200e-03, - 2DIAGNOSTIC, 54, -1.092748689607e+00, 1.029309124020e-04, 3.6707e-01, 8.6420e-03, - 2DIAGNOSTIC, 55, -1.093370473413e+00, 9.737787489794e-05, 3.7053e-01, 3.4621e-03, - 2DIAGNOSTIC, 56, -1.094244012348e+00, 9.253916262571e-05, 3.7418e-01, 3.6452e-03, - 2DIAGNOSTIC, 57, -1.094441884259e+00, 9.202723731066e-05, 3.7788e-01, 3.7022e-03, - 2DIAGNOSTIC, 58, -1.094801629873e+00, 8.708601858926e-05, 3.8239e-01, 4.5040e-03, - 2DIAGNOSTIC, 59, -1.096008491373e+00, 8.146108879670e-05, 3.8754e-01, 5.1541e-03, - 2DIAGNOSTIC, 60, -1.096798251033e+00, 7.297503368019e-05, 3.9281e-01, 5.2741e-03, - 2DIAGNOSTIC, 61, -1.097167090367e+00, 6.101278247525e-05, 3.9714e-01, 4.3230e-03, - 2DIAGNOSTIC, 62, -1.098060744097e+00, 5.861094354107e-05, 4.0153e-01, 4.3890e-03, - 2DIAGNOSTIC, 63, -1.098671338460e+00, 5.814300123860e-05, 4.0581e-01, 4.2820e-03, - 2DIAGNOSTIC, 64, -1.098989257092e+00, 5.672604472534e-05, 4.0986e-01, 4.0488e-03, - 2DIAGNOSTIC, 65, -1.099436394135e+00, 5.430559028234e-05, 4.1430e-01, 4.4451e-03, - 2DIAGNOSTIC, 66, -1.100236778679e+00, 5.367982324903e-05, 4.2114e-01, 6.8371e-03, - 2DIAGNOSTIC, 67, -1.100479368587e+00, 4.967619976949e-05, 4.2569e-01, 4.5500e-03, - 2DIAGNOSTIC, 68, -1.100776968654e+00, 4.357839945149e-05, 4.3030e-01, 4.6101e-03, - 2DIAGNOSTIC, 69, -1.102339919085e+00, 4.434066070785e-05, 4.3628e-01, 5.9850e-03, - 2DIAGNOSTIC, 70, -1.103413343100e+00, 4.789221034774e-05, 4.3935e-01, 3.0680e-03, - 2DIAGNOSTIC, 71, -1.103205027875e+00, 4.724208855622e-05, 4.4162e-01, 2.2669e-03, - 2DIAGNOSTIC, 72, -1.102242868736e+00, 4.195780838904e-05, 4.4575e-01, 4.1320e-03, - 2DIAGNOSTIC, 73, -1.102254548081e+00, 3.526937334224e-05, 4.4778e-01, 2.0320e-03, - 2DIAGNOSTIC, 74, -1.102287396883e+00, 2.652171061254e-05, 4.4980e-01, 2.0130e-03, - 2DIAGNOSTIC, 75, -1.102340767317e+00, 1.710243712887e-05, 4.5183e-01, 2.0349e-03, - 2DIAGNOSTIC, 76, -1.102422337952e+00, 9.542831085162e-06, 4.5354e-01, 1.7121e-03, - 2DIAGNOSTIC, 77, -1.102539079627e+00, 2.716570435251e-06, 4.5540e-01, 1.8568e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.461604375466e-01, 1.797693134862e+308, 5.2905e-01, 7.3645e-02, - 2DIAGNOSTIC, 2, -7.461866811012e-01, 1.797693134862e+308, 5.4904e-01, 1.9992e-02, - 2DIAGNOSTIC, 3, -7.477731431315e-01, 1.797693134862e+308, 5.5297e-01, 3.9361e-03, - 2DIAGNOSTIC, 4, -7.501978351298e-01, 1.797693134862e+308, 5.5794e-01, 4.9670e-03, - 2DIAGNOSTIC, 5, -7.541386696437e-01, 1.797693134862e+308, 5.6223e-01, 4.2939e-03, - 2DIAGNOSTIC, 6, -7.595095906952e-01, 1.797693134862e+308, 5.6431e-01, 2.0800e-03, - 2DIAGNOSTIC, 7, -7.653972582174e-01, 1.797693134862e+308, 5.6643e-01, 2.1200e-03, - 2DIAGNOSTIC, 8, -7.718621366334e-01, 1.797693134862e+308, 5.6863e-01, 2.1961e-03, - 2DIAGNOSTIC, 9, -7.776184524130e-01, 1.797693134862e+308, 5.7137e-01, 2.7411e-03, - 2DIAGNOSTIC, 10, -7.871507399272e-01, 3.491172420664e-03, 5.7462e-01, 3.2511e-03, - 2DIAGNOSTIC, 11, -7.884834791552e-01, 3.564500744947e-03, 5.7707e-01, 2.4440e-03, - 2DIAGNOSTIC, 12, -7.929335935548e-01, 3.445954712008e-03, 5.7953e-01, 2.4619e-03, - 2DIAGNOSTIC, 13, -7.978018323473e-01, 3.217211836909e-03, 5.8339e-01, 3.8581e-03, - 2DIAGNOSTIC, 14, -8.016597066498e-01, 2.891117684101e-03, 5.8979e-01, 6.4030e-03, - 2DIAGNOSTIC, 15, -8.023769625137e-01, 2.457673096064e-03, 5.9883e-01, 9.0370e-03, - 2DIAGNOSTIC, 16, -8.028087073880e-01, 1.989509633349e-03, 6.1015e-01, 1.1325e-02, - 2DIAGNOSTIC, 17, -8.029443799109e-01, 1.525468537288e-03, 6.1956e-01, 9.4130e-03, - 2DIAGNOSTIC, 18, -8.031884040272e-01, 1.107768802685e-03, 6.2590e-01, 6.3400e-03, - 2DIAGNOSTIC, 19, -8.037732564777e-01, 7.496568056186e-04, 6.4641e-01, 2.0505e-02, - 2DIAGNOSTIC, 20, -8.038688337891e-01, 5.353838947478e-04, 6.5465e-01, 8.2428e-03, - 2DIAGNOSTIC, 21, -8.043575700704e-01, 3.238486263650e-04, 6.6314e-01, 8.4889e-03, - 2DIAGNOSTIC, 22, -8.045771444798e-01, 1.776452048305e-04, 6.7007e-01, 6.9280e-03, - 2DIAGNOSTIC, 23, -8.046273543555e-01, 1.040252955425e-04, 6.8934e-01, 1.9270e-02, - 2DIAGNOSTIC, 24, -8.046582709674e-01, 8.557742173846e-05, 6.9807e-01, 8.7290e-03, - 2DIAGNOSTIC, 25, -8.047052900210e-01, 7.167589670989e-05, 7.1192e-01, 1.3850e-02, - 2DIAGNOSTIC, 26, -8.047526632533e-01, 5.890707063954e-05, 7.2173e-01, 9.8090e-03, - 2DIAGNOSTIC, 27, -8.049653903719e-01, 4.628291360406e-05, 7.3598e-01, 1.4255e-02, - 2DIAGNOSTIC, 28, -8.051253578692e-01, 3.535801257704e-05, 7.5111e-01, 1.5125e-02, - 2DIAGNOSTIC, 29, -8.072662556265e-01, 5.593190650054e-05, 7.5919e-01, 8.0791e-03, - 2DIAGNOSTIC, 30, -8.089418378845e-01, 9.038301606443e-05, 7.7617e-01, 1.6985e-02, - 2DIAGNOSTIC, 31, -8.098995570401e-01, 1.305979575828e-04, 7.8998e-01, 1.3808e-02, - 2DIAGNOSTIC, 32, -8.134059422058e-01, 1.980897904681e-04, 7.9551e-01, 5.5280e-03, - 2DIAGNOSTIC, 33, -8.153706481920e-01, 2.638318561609e-04, 8.1982e-01, 2.4317e-02, - 2DIAGNOSTIC, 34, -8.158180588587e-01, 3.052970597246e-04, 8.2777e-01, 7.9501e-03, - 2DIAGNOSTIC, 35, -8.164385980262e-01, 3.225912230892e-04, 8.3417e-01, 6.3968e-03, - 2DIAGNOSTIC, 36, -8.166888527681e-01, 3.114402860845e-04, 8.4423e-01, 1.0063e-02, - 2DIAGNOSTIC, 37, -8.167641540307e-01, 2.740316136814e-04, 8.5250e-01, 8.2688e-03, - 2DIAGNOSTIC, 38, -8.172274240326e-01, 2.179286299533e-04, 8.7257e-01, 2.0067e-02, - 2DIAGNOSTIC, 39, -8.172084222547e-01, 1.635212038175e-04, 8.8436e-01, 1.1792e-02, - 2DIAGNOSTIC, 40, -8.173383793543e-01, 1.129002948250e-04, 8.9761e-01, 1.3247e-02, - 2DIAGNOSTIC, 41, -8.174351336276e-01, 6.267555343450e-05, 9.1823e-01, 2.0616e-02, - 2DIAGNOSTIC, 42, -8.174686552239e-01, 3.868360131102e-05, 9.2965e-01, 1.1427e-02, - 2DIAGNOSTIC, 43, -8.174875909590e-01, 2.861081671829e-05, 9.3645e-01, 6.7990e-03, - 2DIAGNOSTIC, 44, -8.174786742897e-01, 1.978494096502e-05, 9.4868e-01, 1.2234e-02, - 2DIAGNOSTIC, 45, -8.174538206487e-01, 1.425474536884e-05, 9.5957e-01, 1.0885e-02, - 2DIAGNOSTIC, 46, -8.175168979635e-01, 1.011561908570e-05, 9.7384e-01, 1.4267e-02, - 2DIAGNOSTIC, 47, -8.175692365755e-01, 6.112106123671e-06, 9.8477e-01, 1.0932e-02, - 2DIAGNOSTIC, 48, -8.176390041724e-01, 5.725977882530e-06, 1.0124e+00, 2.7656e-02, - 2DIAGNOSTIC, 49, -8.176390009674e-01, 4.718826046010e-06, 1.0159e+00, 3.4320e-03, - 2DIAGNOSTIC, 50, -8.176390080218e-01, 4.286874034351e-06, 1.0327e+00, 1.6839e-02, - 2DIAGNOSTIC, 51, -8.176390199482e-01, 4.191240047746e-06, 1.0424e+00, 9.6979e-03, - 2DIAGNOSTIC, 52, -8.176390401061e-01, 3.970922540519e-06, 1.0465e+00, 4.1139e-03, - 2DIAGNOSTIC, 53, -8.176390741660e-01, 3.562518639449e-06, 1.0502e+00, 3.7251e-03, - 2DIAGNOSTIC, 54, -8.176391316837e-01, 2.841836557702e-06, 1.0567e+00, 6.4991e-03, - 2DIAGNOSTIC, 55, -8.176392287258e-01, 1.772900196151e-06, 1.0662e+00, 9.4950e-03, - 2DIAGNOSTIC, 56, -8.176393921971e-01, 1.025445421056e-06, 1.0770e+00, 1.0767e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.947514159820e-01, 1.797693134862e+308, 1.1916e+00, 1.1465e-01, - 2DIAGNOSTIC, 2, -5.954369177760e-01, 1.797693134862e+308, 1.2494e+00, 5.7736e-02, - 2DIAGNOSTIC, 3, -5.963731095786e-01, 1.797693134862e+308, 1.3036e+00, 5.4206e-02, - 2DIAGNOSTIC, 4, -5.976064261303e-01, 1.797693134862e+308, 1.3190e+00, 1.5440e-02, - 2DIAGNOSTIC, 5, -5.988698583234e-01, 1.797693134862e+308, 1.3439e+00, 2.4838e-02, - 2DIAGNOSTIC, 6, -5.998363455278e-01, 1.797693134862e+308, 1.3972e+00, 5.3309e-02, - 2DIAGNOSTIC, 7, -6.015729620416e-01, 1.797693134862e+308, 1.4519e+00, 5.4709e-02, - 2DIAGNOSTIC, 8, -6.017947369532e-01, 1.797693134862e+308, 1.4852e+00, 3.3277e-02, - 2DIAGNOSTIC, 9, -6.019754330754e-01, 1.797693134862e+308, 1.5302e+00, 4.5086e-02, - 2DIAGNOSTIC, 10, -6.021171232088e-01, 8.996894980326e-04, 1.5701e+00, 3.9845e-02, - 2DIAGNOSTIC, 11, -6.022155121730e-01, 7.149395076491e-04, 1.5992e+00, 2.9087e-02, - 2DIAGNOSTIC, 12, -6.023204183916e-01, 5.275943717547e-04, 1.6258e+00, 2.6585e-02, - 2DIAGNOSTIC, 13, -6.024616878055e-01, 3.605400693920e-04, 1.6653e+00, 3.9499e-02, - 2DIAGNOSTIC, 14, -6.026512363897e-01, 2.330107087670e-04, 1.7398e+00, 7.4581e-02, - 2DIAGNOSTIC, 15, -6.027341955859e-01, 1.437292831560e-04, 1.7719e+00, 3.2082e-02, - 2DIAGNOSTIC, 16, -6.027556684409e-01, 8.058455057572e-05, 1.8020e+00, 3.0037e-02, - 2DIAGNOSTIC, 17, -6.027898780689e-01, 6.693558243169e-05, 1.8284e+00, 2.6415e-02, - 2DIAGNOSTIC, 18, -6.028244188759e-01, 5.541362243115e-05, 1.8549e+00, 2.6575e-02, - 2DIAGNOSTIC, 19, -6.028349610513e-01, 4.476560520449e-05, 1.8896e+00, 3.4658e-02, - 2DIAGNOSTIC, 20, -6.028296024447e-01, 3.438905584117e-05, 1.9400e+00, 5.0433e-02, - 2DIAGNOSTIC, 21, -6.028441704112e-01, 2.453445519401e-05, 1.9783e+00, 3.8211e-02, - 2DIAGNOSTIC, 22, -6.028564234275e-01, 1.591567888579e-05, 2.0125e+00, 3.4221e-02, - 2DIAGNOSTIC, 23, -6.028625756427e-01, 9.621070267272e-06, 2.0499e+00, 3.7432e-02, - 2DIAGNOSTIC, 24, -6.028671180129e-01, 6.871662380552e-06, 2.0914e+00, 4.1487e-02, - 2DIAGNOSTIC, 25, -6.028697289411e-01, 5.449828372930e-06, 2.1350e+00, 4.3642e-02, - 2DIAGNOSTIC, 26, -6.028713772325e-01, 4.154816325493e-06, 2.1708e+00, 3.5773e-02, - 2DIAGNOSTIC, 27, -6.028679791165e-01, 3.198911781639e-06, 2.2284e+00, 5.7577e-02, - 2DIAGNOSTIC, 28, -6.028684428351e-01, 2.709623146545e-06, 2.2697e+00, 4.1332e-02, - 2DIAGNOSTIC, 29, -6.028686753157e-01, 2.287774259091e-06, 2.2939e+00, 2.4219e-02, - 2DIAGNOSTIC, 30, -6.028702443428e-01, 1.717450609895e-06, 2.3249e+00, 3.0951e-02, - 2DIAGNOSTIC, 31, -6.028754027811e-01, 1.418668227601e-06, 2.3673e+00, 4.2383e-02, - 2DIAGNOSTIC, 32, -6.028764533894e-01, 1.295740648506e-06, 2.3974e+00, 3.0122e-02, - 2DIAGNOSTIC, 33, -6.028790233200e-01, 1.276575794983e-06, 2.4244e+00, 2.7001e-02, - 2DIAGNOSTIC, 34, -6.028896199961e-01, 1.437998832156e-06, 2.4518e+00, 2.7377e-02, - 2DIAGNOSTIC, 35, -6.028963623718e-01, 1.663682659588e-06, 2.4822e+00, 3.0445e-02, - 2DIAGNOSTIC, 36, -6.029152401817e-01, 2.074306443865e-06, 2.5222e+00, 3.9982e-02, - 2DIAGNOSTIC, 37, -6.029435515265e-01, 2.663471819049e-06, 2.5521e+00, 2.9905e-02, - 2DIAGNOSTIC, 38, -6.030672528306e-01, 4.587215458488e-06, 2.6147e+00, 6.2608e-02, - 2DIAGNOSTIC, 39, -6.030709749085e-01, 6.065596701146e-06, 2.6554e+00, 4.0678e-02, - 2DIAGNOSTIC, 40, -6.030707457253e-01, 7.003243437980e-06, 2.6918e+00, 3.6435e-02, - 2DIAGNOSTIC, 41, -6.030753994285e-01, 7.436439501025e-06, 2.7500e+00, 5.8144e-02, - 2DIAGNOSTIC, 42, -6.030801509702e-01, 7.267963588346e-06, 2.8055e+00, 5.5494e-02, - 2DIAGNOSTIC, 43, -6.030890561656e-01, 6.587262048482e-06, 2.8453e+00, 3.9842e-02, - 2DIAGNOSTIC, 44, -6.031015691176e-01, 5.625061855412e-06, 2.8715e+00, 2.6214e-02, - 2DIAGNOSTIC, 45, -6.031165758502e-01, 4.482133105672e-06, 2.9253e+00, 5.3773e-02, - 2DIAGNOSTIC, 46, -6.031500799698e-01, 3.570687249536e-06, 2.9898e+00, 6.4493e-02, - 2DIAGNOSTIC, 47, -6.031487621371e-01, 2.651417864361e-06, 3.0174e+00, 2.7598e-02, - 2DIAGNOSTIC, 48, -6.031528301505e-01, 2.842342459525e-06, 3.0708e+00, 5.3444e-02, - 2DIAGNOSTIC, 49, -6.031625467291e-01, 2.948620939421e-06, 3.1610e+00, 9.0169e-02, - 2DIAGNOSTIC, 50, -6.031610638592e-01, 2.808437884496e-06, 3.2874e+00, 1.2645e-01, - 2DIAGNOSTIC, 51, -6.031610638588e-01, 2.506636251960e-06, 3.3595e+00, 7.2097e-02, - 2DIAGNOSTIC, 52, -6.031610638588e-01, 2.080528064646e-06, 3.3891e+00, 2.9571e-02, - 2DIAGNOSTIC, 53, -6.031610638588e-01, 1.611142571724e-06, 3.4040e+00, 1.4849e-02, - 2DIAGNOSTIC, 54, -6.031610638588e-01, 1.169636874181e-06, 3.4200e+00, 1.6065e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.923241702417e-01, 1.797693134862e+308, 3.7844e+00, 3.6441e-01, - Elapsed time (stage 1): 3.8616e+00 - - -Total elapsed time: 7.2382e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:01:02 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 37 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 102 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 83.10% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 83.10% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[20223 10324 39860 12228 31825 1236 12751 4301 2999 1521 1236 673 - 8180 1578 2030 433 446 2434 696 1191 0 0 0 234 - 0 485 0 371 0 0 213 0 0 0 0 0 - 0] -[114683 164316 33061 35937 19171 25026 21059 20713 20348 24718 - 23756 17829 17034 12836 11364 10029 8777 8041 7084 5271 - 2051 1540 2722 1498 1500 1596 1469 1000 3223 1186 - 625 1424 3895 1491 796 727 1160] -[ 0 15759 21416 848 13636 0 0 7810 4976 0 24673 0 - 0 0 0 469 205 6287 2332 207 908 0 0 0 - 24441 509 0 0 9186 0 0 0 0 596 14937 5419 - 0] -[ 2773 120721 151668 25038 3925 4280 4936 674 792 1444 - 1386 1067 1127 508 6928 5081 2944 1494 33721 14228 - 14148 9788 5608 1996 4939 7646 2148 2572 1282 2917 - 2449 7807 2886 19674 745 1128 4289] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:20:32 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:20:37 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:28:32 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:28:32 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:28:32 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:28:55 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:29:04 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC001 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:30:07 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:30:32 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:33:41 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:33:42 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:35:17 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:35:18 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x563188727d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.8116, 122.979, -126.09] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56318859e730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fa879868010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x56318872b020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [109.153, 59.7173, -109.454] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5631887310c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fa8761a9010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x563188741840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.8116, 122.979, -126.09] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56318872d890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fa8714d5010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5631887453e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [109.153, 59.7173, -109.454] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x563188734130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fa86de16010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.208520620024e-01, 1.797693134862e+308, 2.4684e-01, 2.4684e-01, - 2DIAGNOSTIC, 2, -5.236537413346e-01, 1.797693134862e+308, 2.4817e-01, 1.3368e-03, - 2DIAGNOSTIC, 3, -5.283279548449e-01, 1.797693134862e+308, 2.4967e-01, 1.4980e-03, - 2DIAGNOSTIC, 4, -5.322137495879e-01, 1.797693134862e+308, 2.5093e-01, 1.2610e-03, - 2DIAGNOSTIC, 5, -5.375510002376e-01, 1.797693134862e+308, 2.5225e-01, 1.3158e-03, - 2DIAGNOSTIC, 6, -5.598077844422e-01, 1.797693134862e+308, 2.5361e-01, 1.3602e-03, - 2DIAGNOSTIC, 7, -5.908947912557e-01, 1.797693134862e+308, 2.5490e-01, 1.2960e-03, - 2DIAGNOSTIC, 8, -6.144093803999e-01, 1.797693134862e+308, 2.5646e-01, 1.5569e-03, - 2DIAGNOSTIC, 9, -6.479551303579e-01, 1.797693134862e+308, 2.5842e-01, 1.9569e-03, - 2DIAGNOSTIC, 10, -6.496736149483e-01, 1.638831538343e-02, 2.6013e-01, 1.7109e-03, - 2DIAGNOSTIC, 11, -6.497428856690e-01, 1.585146493679e-02, 2.6182e-01, 1.6911e-03, - 2DIAGNOSTIC, 12, -6.477395884824e-01, 1.403888560455e-02, 2.6328e-01, 1.4551e-03, - 2DIAGNOSTIC, 13, -6.476014726909e-01, 1.143642751849e-02, 2.6531e-01, 2.0308e-03, - 2DIAGNOSTIC, 14, -6.483622432069e-01, 8.365481330829e-03, 2.6724e-01, 1.9350e-03, - 2DIAGNOSTIC, 15, -6.480236330621e-01, 5.136938539350e-03, 2.6875e-01, 1.5070e-03, - 2DIAGNOSTIC, 16, -6.453024582183e-01, 2.454228753972e-03, 2.7017e-01, 1.4212e-03, - 2DIAGNOSTIC, 17, -6.464995684969e-01, 7.777879597111e-04, 2.7179e-01, 1.6239e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.986142807321e-01, 1.797693134862e+308, 5.2250e-01, 2.5071e-01, - 2DIAGNOSTIC, 2, -4.992765745854e-01, 1.797693134862e+308, 5.2555e-01, 3.0479e-03, - 2DIAGNOSTIC, 3, -5.017985097811e-01, 1.797693134862e+308, 5.2853e-01, 2.9771e-03, - 2DIAGNOSTIC, 4, -5.053087746563e-01, 1.797693134862e+308, 5.3140e-01, 2.8780e-03, - 2DIAGNOSTIC, 5, -5.069208020946e-01, 1.797693134862e+308, 5.3384e-01, 2.4409e-03, - 2DIAGNOSTIC, 6, -5.079398198183e-01, 1.797693134862e+308, 5.3607e-01, 2.2261e-03, - 2DIAGNOSTIC, 7, -5.090517074467e-01, 1.797693134862e+308, 5.3853e-01, 2.4631e-03, - 2DIAGNOSTIC, 8, -5.105410262737e-01, 1.797693134862e+308, 5.4127e-01, 2.7390e-03, - 2DIAGNOSTIC, 9, -5.107430595664e-01, 1.797693134862e+308, 5.4426e-01, 2.9860e-03, - 2DIAGNOSTIC, 10, -5.108618821567e-01, 1.705787931449e-03, 5.4692e-01, 2.6588e-03, - 2DIAGNOSTIC, 11, -5.102805770983e-01, 1.258376976420e-03, 5.4929e-01, 2.3739e-03, - 2DIAGNOSTIC, 12, -5.117792083704e-01, 8.738211390931e-04, 5.5200e-01, 2.7108e-03, - 2DIAGNOSTIC, 13, -5.124650041210e-01, 6.023809154422e-04, 5.5466e-01, 2.6579e-03, - 2DIAGNOSTIC, 14, -5.126356067648e-01, 4.613445981388e-04, 5.5708e-01, 2.4199e-03, - 2DIAGNOSTIC, 15, -5.131346130087e-01, 3.774353135248e-04, 5.5941e-01, 2.3341e-03, - 2DIAGNOSTIC, 16, -5.136932536663e-01, 3.245386689883e-04, 5.6177e-01, 2.3551e-03, - 2DIAGNOSTIC, 17, -5.176554275523e-01, 4.124580333262e-04, 5.6505e-01, 3.2802e-03, - 2DIAGNOSTIC, 18, -5.197203241960e-01, 5.585508185305e-04, 5.6741e-01, 2.3589e-03, - 2DIAGNOSTIC, 19, -5.244729120196e-01, 7.824663114311e-04, 5.7086e-01, 3.4509e-03, - 2DIAGNOSTIC, 20, -5.259926031585e-01, 9.560421584334e-04, 5.7343e-01, 2.5661e-03, - 2DIAGNOSTIC, 21, -5.260987744787e-01, 1.010985748356e-03, 5.7597e-01, 2.5489e-03, - 2DIAGNOSTIC, 22, -5.263515414683e-01, 1.010960946402e-03, 5.7822e-01, 2.2480e-03, - 2DIAGNOSTIC, 23, -5.276380102860e-01, 9.630610755876e-04, 5.8081e-01, 2.5871e-03, - 2DIAGNOSTIC, 24, -5.282605863849e-01, 8.458800233200e-04, 5.8306e-01, 2.2531e-03, - 2DIAGNOSTIC, 25, -5.305807768424e-01, 7.218041803084e-04, 5.8534e-01, 2.2740e-03, - 2DIAGNOSTIC, 26, -5.367444164503e-01, 6.809943930915e-04, 5.8889e-01, 3.5510e-03, - 2DIAGNOSTIC, 27, -5.376858751034e-01, 6.768188860769e-04, 5.9241e-01, 3.5231e-03, - 2DIAGNOSTIC, 28, -5.379307444107e-01, 6.535661988530e-04, 5.9498e-01, 2.5730e-03, - 2DIAGNOSTIC, 29, -5.381835956664e-01, 6.660104037188e-04, 5.9721e-01, 2.2259e-03, - 2DIAGNOSTIC, 30, -5.384750022779e-01, 6.473011070599e-04, 5.9945e-01, 2.2380e-03, - 2DIAGNOSTIC, 31, -5.387462755561e-01, 5.736584026294e-04, 6.0189e-01, 2.4440e-03, - 2DIAGNOSTIC, 32, -5.389239472523e-01, 4.574049154844e-04, 6.0407e-01, 2.1808e-03, - 2DIAGNOSTIC, 33, -5.391032661608e-01, 3.312119708133e-04, 6.0653e-01, 2.4569e-03, - 2DIAGNOSTIC, 34, -5.394171677824e-01, 1.967079334250e-04, 6.0873e-01, 2.2030e-03, - 2DIAGNOSTIC, 35, -5.399218795481e-01, 9.289182118430e-05, 6.1099e-01, 2.2609e-03, - 2DIAGNOSTIC, 36, -5.406366268346e-01, 8.984625758328e-05, 6.1329e-01, 2.2962e-03, - 2DIAGNOSTIC, 37, -5.416408225053e-01, 1.069255681635e-04, 6.1594e-01, 2.6481e-03, - 2DIAGNOSTIC, 38, -5.420055846380e-01, 1.214717686271e-04, 6.1989e-01, 3.9511e-03, - 2DIAGNOSTIC, 39, -5.423689607012e-01, 1.323841001900e-04, 6.2210e-01, 2.2099e-03, - 2DIAGNOSTIC, 40, -5.424177984933e-01, 1.347479999574e-04, 6.2432e-01, 2.2230e-03, - 2DIAGNOSTIC, 41, -5.425519819155e-01, 1.294949325616e-04, 6.2684e-01, 2.5179e-03, - 2DIAGNOSTIC, 42, -5.426073702753e-01, 1.150795206008e-04, 6.2941e-01, 2.5730e-03, - 2DIAGNOSTIC, 43, -5.426994073030e-01, 9.383824109322e-05, 6.3196e-01, 2.5489e-03, - 2DIAGNOSTIC, 44, -5.434233380106e-01, 7.749255718202e-05, 6.3507e-01, 3.1121e-03, - 2DIAGNOSTIC, 45, -5.434592307874e-01, 6.076757578651e-05, 6.3723e-01, 2.1610e-03, - 2DIAGNOSTIC, 46, -5.435625749290e-01, 4.851438288035e-05, 6.3971e-01, 2.4710e-03, - 2DIAGNOSTIC, 47, -5.436043026756e-01, 4.425828642515e-05, 6.4186e-01, 2.1582e-03, - 2DIAGNOSTIC, 48, -5.434111643850e-01, 3.781487606626e-05, 6.4461e-01, 2.7509e-03, - 2DIAGNOSTIC, 49, -5.434266853296e-01, 3.221096561610e-05, 6.4706e-01, 2.4462e-03, - 2DIAGNOSTIC, 50, -5.434381920574e-01, 2.438539270681e-05, 6.4949e-01, 2.4312e-03, - 2DIAGNOSTIC, 51, -5.434487918964e-01, 1.619254419921e-05, 6.5163e-01, 2.1379e-03, - 2DIAGNOSTIC, 52, -5.433527606447e-01, 6.478631553439e-06, 6.5409e-01, 2.4619e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.121448280580e-01, 1.797693134862e+308, 9.1353e-01, 2.5944e-01, - 2DIAGNOSTIC, 2, -4.131220850948e-01, 1.797693134862e+308, 9.2722e-01, 1.3682e-02, - 2DIAGNOSTIC, 3, -4.145517746581e-01, 1.797693134862e+308, 9.4053e-01, 1.3312e-02, - 2DIAGNOSTIC, 4, -4.153852252569e-01, 1.797693134862e+308, 9.5327e-01, 1.2741e-02, - 2DIAGNOSTIC, 5, -4.163820360928e-01, 1.797693134862e+308, 9.6809e-01, 1.4818e-02, - 2DIAGNOSTIC, 6, -4.172615683312e-01, 1.797693134862e+308, 9.8086e-01, 1.2769e-02, - 2DIAGNOSTIC, 7, -4.181145363830e-01, 1.797693134862e+308, 9.9372e-01, 1.2866e-02, - 2DIAGNOSTIC, 8, -4.192735313326e-01, 1.797693134862e+308, 1.0087e+00, 1.5023e-02, - 2DIAGNOSTIC, 9, -4.211795045039e-01, 1.797693134862e+308, 1.0248e+00, 1.6035e-02, - 2DIAGNOSTIC, 10, -4.252684916655e-01, 1.698968726770e-03, 1.0371e+00, 1.2339e-02, - 2DIAGNOSTIC, 11, -4.270197749588e-01, 1.783562490579e-03, 1.0523e+00, 1.5151e-02, - 2DIAGNOSTIC, 12, -4.277046951890e-01, 1.787772423253e-03, 1.0656e+00, 1.3307e-02, - 2DIAGNOSTIC, 13, -4.294553138335e-01, 1.797636574768e-03, 1.0831e+00, 1.7524e-02, - 2DIAGNOSTIC, 14, -4.309062500189e-01, 1.749799683839e-03, 1.0982e+00, 1.5055e-02, - 2DIAGNOSTIC, 15, -4.361375772423e-01, 1.823873533951e-03, 1.1111e+00, 1.2991e-02, - 2DIAGNOSTIC, 16, -4.470133297040e-01, 2.206863633227e-03, 1.1262e+00, 1.5064e-02, - 2DIAGNOSTIC, 17, -4.587609727854e-01, 2.824063481995e-03, 1.1412e+00, 1.4995e-02, - 2DIAGNOSTIC, 18, -4.610525413816e-01, 3.229667192858e-03, 1.1541e+00, 1.2864e-02, - 2DIAGNOSTIC, 19, -4.653958867055e-01, 3.511619470492e-03, 1.1689e+00, 1.4790e-02, - 2DIAGNOSTIC, 20, -4.709972593486e-01, 3.753593967831e-03, 1.1816e+00, 1.2774e-02, - 2DIAGNOSTIC, 21, -4.776403826623e-01, 3.872769142728e-03, 1.1947e+00, 1.3081e-02, - 2DIAGNOSTIC, 22, -5.684871232024e-01, 6.268215869566e-03, 1.2178e+00, 2.3110e-02, - 2DIAGNOSTIC, 23, -5.885081637940e-01, 8.342060911676e-03, 1.2344e+00, 1.6580e-02, - 2DIAGNOSTIC, 24, -6.072422905547e-01, 9.949223987059e-03, 1.2501e+00, 1.5743e-02, - 2DIAGNOSTIC, 25, -6.236580555807e-01, 1.100782040156e-02, 1.2636e+00, 1.3444e-02, - 2DIAGNOSTIC, 26, -6.607372088599e-01, 1.200955382631e-02, 1.2813e+00, 1.7719e-02, - 2DIAGNOSTIC, 27, -6.893581078099e-01, 1.261430364574e-02, 1.2971e+00, 1.5756e-02, - 2DIAGNOSTIC, 28, -7.031248969564e-01, 1.229446062411e-02, 1.3124e+00, 1.5366e-02, - 2DIAGNOSTIC, 29, -7.199982761569e-01, 1.130286713533e-02, 1.3283e+00, 1.5848e-02, - 2DIAGNOSTIC, 30, -7.410728420719e-01, 9.863213975651e-03, 1.3428e+00, 1.4517e-02, - 2DIAGNOSTIC, 31, -7.546865344559e-01, 7.943873976832e-03, 1.3566e+00, 1.3834e-02, - 2DIAGNOSTIC, 32, -7.561418987074e-01, 7.035665292120e-03, 1.3711e+00, 1.4473e-02, - 2DIAGNOSTIC, 33, -7.566377193621e-01, 5.891824184118e-03, 1.3860e+00, 1.4909e-02, - 2DIAGNOSTIC, 34, -7.575341514726e-01, 4.605159398773e-03, 1.4009e+00, 1.4845e-02, - 2DIAGNOSTIC, 35, -7.581204965013e-01, 3.232628863305e-03, 1.4177e+00, 1.6831e-02, - 2DIAGNOSTIC, 36, -7.584942607374e-01, 2.197166403059e-03, 1.4322e+00, 1.4486e-02, - 2DIAGNOSTIC, 37, -7.586470095633e-01, 1.436177796838e-03, 1.4447e+00, 1.2516e-02, - 2DIAGNOSTIC, 38, -7.589433758884e-01, 7.842072826995e-04, 1.4571e+00, 1.2425e-02, - 2DIAGNOSTIC, 39, -7.592034735142e-01, 3.210781469010e-04, 1.4735e+00, 1.6375e-02, - 2DIAGNOSTIC, 40, -7.593463529804e-01, 1.210527295438e-04, 1.4954e+00, 2.1940e-02, - 2DIAGNOSTIC, 41, -7.593550408807e-01, 8.821561367250e-05, 1.5100e+00, 1.4529e-02, - 2DIAGNOSTIC, 42, -7.593929914175e-01, 6.687629635487e-05, 1.5251e+00, 1.5101e-02, - 2DIAGNOSTIC, 43, -7.594276006522e-01, 4.645428766563e-05, 1.5380e+00, 1.2948e-02, - 2DIAGNOSTIC, 44, -7.594144978827e-01, 3.254377587814e-05, 1.5523e+00, 1.4316e-02, - 2DIAGNOSTIC, 45, -7.594493271190e-01, 2.305868026085e-05, 1.5647e+00, 1.2368e-02, - 2DIAGNOSTIC, 46, -7.594421008642e-01, 1.585844855365e-05, 1.5789e+00, 1.4256e-02, - 2DIAGNOSTIC, 47, -7.594114834893e-01, 8.835151597584e-06, 1.5918e+00, 1.2868e-02, - 2DIAGNOSTIC, 48, -7.594352303553e-01, 4.550863184249e-06, 1.6065e+00, 1.4658e-02, - 2DIAGNOSTIC, 49, -7.594917131311e-01, 3.148519611296e-06, 1.6208e+00, 1.4351e-02, - 2DIAGNOSTIC, 50, -7.594800059397e-01, 2.815407670598e-06, 1.6343e+00, 1.3435e-02, - 2DIAGNOSTIC, 51, -7.594761198054e-01, 2.356240541641e-06, 1.6465e+00, 1.2221e-02, - 2DIAGNOSTIC, 52, -7.594833040921e-01, 2.180192166291e-06, 1.6612e+00, 1.4701e-02, - 2DIAGNOSTIC, 53, -7.595244155019e-01, 2.537639349334e-06, 1.6737e+00, 1.2475e-02, - 2DIAGNOSTIC, 54, -7.596136901336e-01, 3.327074754516e-06, 1.6860e+00, 1.2326e-02, - 2DIAGNOSTIC, 55, -7.597325352301e-01, 5.103658322632e-06, 1.7001e+00, 1.4109e-02, - 2DIAGNOSTIC, 56, -7.601813307238e-01, 9.999068524620e-06, 1.7143e+00, 1.4157e-02, - 2DIAGNOSTIC, 57, -7.601469408383e-01, 1.319056824624e-05, 1.7339e+00, 1.9668e-02, - 2DIAGNOSTIC, 58, -7.602652253115e-01, 1.620620457529e-05, 1.7462e+00, 1.2277e-02, - 2DIAGNOSTIC, 59, -7.602574675464e-01, 1.799725417231e-05, 1.7603e+00, 1.4142e-02, - 2DIAGNOSTIC, 60, -7.602959320811e-01, 1.823949766817e-05, 1.7727e+00, 1.2316e-02, - 2DIAGNOSTIC, 61, -7.602666830063e-01, 1.650045589515e-05, 1.7868e+00, 1.4196e-02, - 2DIAGNOSTIC, 62, -7.602965347169e-01, 1.358447840026e-05, 1.7991e+00, 1.2262e-02, - 2DIAGNOSTIC, 63, -7.604395764283e-01, 1.086794671486e-05, 1.8137e+00, 1.4592e-02, - 2DIAGNOSTIC, 64, -7.606244979009e-01, 9.153919149487e-06, 1.8342e+00, 2.0537e-02, - 2DIAGNOSTIC, 65, -7.606126718452e-01, 7.309845970221e-06, 1.8466e+00, 1.2372e-02, - 2DIAGNOSTIC, 66, -7.606160924573e-01, 7.971019267392e-06, 1.8614e+00, 1.4789e-02, - 2DIAGNOSTIC, 67, -7.606219127194e-01, 7.702737149739e-06, 1.8756e+00, 1.4231e-02, - 2DIAGNOSTIC, 68, -7.606313847684e-01, 7.563570974711e-06, 1.8879e+00, 1.2294e-02, - 2DIAGNOSTIC, 69, -7.605497915129e-01, 6.155805878667e-06, 1.9004e+00, 1.2513e-02, - 2DIAGNOSTIC, 70, -7.606234143792e-01, 4.992097884435e-06, 1.9196e+00, 1.9172e-02, - 2DIAGNOSTIC, 71, -7.606286792627e-01, 3.295705013017e-06, 1.9342e+00, 1.4559e-02, - 2DIAGNOSTIC, 72, -7.606301074372e-01, 1.560177882887e-06, 1.9487e+00, 1.4562e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.346567624654e-01, 1.797693134862e+308, 2.3740e+00, 4.2523e-01, - 2DIAGNOSTIC, 2, -6.349722809486e-01, 1.797693134862e+308, 2.4629e+00, 8.8897e-02, - 2DIAGNOSTIC, 3, -6.351679473225e-01, 1.797693134862e+308, 2.5516e+00, 8.8698e-02, - 2DIAGNOSTIC, 4, -6.352812071453e-01, 1.797693134862e+308, 2.6391e+00, 8.7553e-02, - 2DIAGNOSTIC, 5, -6.354935760193e-01, 1.797693134862e+308, 2.7801e+00, 1.4098e-01, - 2DIAGNOSTIC, 6, -6.355972212807e-01, 1.797693134862e+308, 2.8671e+00, 8.7009e-02, - 2DIAGNOSTIC, 7, -6.356293203322e-01, 1.797693134862e+308, 2.9502e+00, 8.3086e-02, - 2DIAGNOSTIC, 8, -6.356876516345e-01, 1.797693134862e+308, 3.0495e+00, 9.9268e-02, - 2DIAGNOSTIC, 9, -6.357863203716e-01, 1.797693134862e+308, 3.1634e+00, 1.1390e-01, - 2DIAGNOSTIC, 10, -6.358133009147e-01, 1.110760664110e-04, 3.2506e+00, 8.7251e-02, - 2DIAGNOSTIC, 11, -6.358293436948e-01, 7.898426789264e-05, 3.3376e+00, 8.7030e-02, - 2DIAGNOSTIC, 12, -6.358592918187e-01, 5.827991020127e-05, 3.4651e+00, 1.2744e-01, - 2DIAGNOSTIC, 13, -6.358609701539e-01, 4.250507145190e-05, 3.5673e+00, 1.0219e-01, - 2DIAGNOSTIC, 14, -6.358588443409e-01, 2.871373521389e-05, 3.6813e+00, 1.1403e-01, - 2DIAGNOSTIC, 15, -6.358542672446e-01, 2.048491248362e-05, 3.8368e+00, 1.5551e-01, - 2DIAGNOSTIC, 16, -6.358542673850e-01, 1.452701302836e-05, 3.9545e+00, 1.1768e-01, - 2DIAGNOSTIC, 17, -6.358542674196e-01, 8.941879556870e-06, 4.0755e+00, 1.2100e-01, - 2DIAGNOSTIC, 18, -6.358542674244e-01, 4.712617389289e-06, 4.1717e+00, 9.6212e-02, - 2DIAGNOSTIC, 19, -6.358542674253e-01, 2.976808909920e-06, 4.3065e+00, 1.3477e-01, - 2DIAGNOSTIC, 20, -6.358542674255e-01, 1.897153922480e-06, 4.4808e+00, 1.7429e-01, - 2DIAGNOSTIC, 21, -6.358542674255e-01, 1.215190452139e-06, 4.6311e+00, 1.5035e-01, - 2DIAGNOSTIC, 22, -6.358542674256e-01, 1.228894936818e-06, 4.8140e+00, 1.8290e-01, - 2DIAGNOSTIC, 23, -6.358542674256e-01, 1.294492843147e-06, 4.9156e+00, 1.0156e-01, - 2DIAGNOSTIC, 24, -6.358542674256e-01, 1.325805547361e-06, 5.0321e+00, 1.1653e-01, - 2DIAGNOSTIC, 25, -6.358542674255e-01, 1.272755302671e-06, 5.1515e+00, 1.1936e-01, - 2DIAGNOSTIC, 26, -6.358542674255e-01, 1.223789268583e-06, 5.2571e+00, 1.0562e-01, - 2DIAGNOSTIC, 27, -6.358542674255e-01, 1.178451851866e-06, 5.3914e+00, 1.3429e-01, - 2DIAGNOSTIC, 28, -6.358542674255e-01, 1.136353707888e-06, 5.4923e+00, 1.0093e-01, - 2DIAGNOSTIC, 29, -6.358542674255e-01, 1.097159601809e-06, 5.6078e+00, 1.1549e-01, - 2DIAGNOSTIC, 30, -6.358542674256e-01, 1.060579051242e-06, 5.7479e+00, 1.4012e-01, - 2DIAGNOSTIC, 31, -6.358542674255e-01, 1.026359071107e-06, 5.8599e+00, 1.1198e-01, - Elapsed time (stage 0): 6.0170e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.977039665206e-01, 1.797693134862e+308, 2.0730e-01, 2.0730e-01, - 2DIAGNOSTIC, 2, -9.994751009871e-01, 1.797693134862e+308, 2.0861e-01, 1.3161e-03, - 2DIAGNOSTIC, 3, -9.991724294794e-01, 1.797693134862e+308, 2.0989e-01, 1.2729e-03, - 2DIAGNOSTIC, 4, -1.001952970212e+00, 1.797693134862e+308, 2.1112e-01, 1.2312e-03, - 2DIAGNOSTIC, 5, -1.003622467957e+00, 1.797693134862e+308, 2.1250e-01, 1.3809e-03, - 2DIAGNOSTIC, 6, -1.006826011991e+00, 1.797693134862e+308, 2.1408e-01, 1.5810e-03, - 2DIAGNOSTIC, 7, -1.009938582962e+00, 1.797693134862e+308, 2.1548e-01, 1.4000e-03, - 2DIAGNOSTIC, 8, -1.011681348807e+00, 1.797693134862e+308, 2.2072e-01, 5.2390e-03, - 2DIAGNOSTIC, 9, -1.011681343211e+00, 1.797693134862e+308, 2.2198e-01, 1.2650e-03, - 2DIAGNOSTIC, 10, -1.011681403991e+00, 1.068401046240e-03, 2.2356e-01, 1.5750e-03, - 2DIAGNOSTIC, 11, -1.011681506745e+00, 8.823629492515e-04, 2.2509e-01, 1.5299e-03, - 2DIAGNOSTIC, 12, -1.011681680425e+00, 6.903201771156e-04, 2.2664e-01, 1.5559e-03, - 2DIAGNOSTIC, 13, -1.011681973899e+00, 4.582825277150e-04, 2.2819e-01, 1.5471e-03, - 2DIAGNOSTIC, 14, -1.011682469544e+00, 2.749133792516e-04, 2.2968e-01, 1.4839e-03, - 2DIAGNOSTIC, 15, -1.011683305919e+00, 1.221392083244e-04, 2.3121e-01, 1.5330e-03, - 2DIAGNOSTIC, 16, -1.011684715228e+00, 3.282378251381e-05, 2.3267e-01, 1.4570e-03, - 2DIAGNOSTIC, 17, -1.011687087931e+00, 2.052513888476e-06, 2.3419e-01, 1.5271e-03, - 2DIAGNOSTIC, 18, -1.011691076838e+00, 2.052013688365e-06, 2.3570e-01, 1.5030e-03, - 2DIAGNOSTIC, 19, -1.011697711288e+00, 2.122999856177e-06, 2.3719e-01, 1.4968e-03, - 2DIAGNOSTIC, 20, -1.011708632601e+00, 2.298719229035e-06, 2.3873e-01, 1.5368e-03, - 2DIAGNOSTIC, 21, -1.011726293678e+00, 2.627845456765e-06, 2.4018e-01, 1.4479e-03, - 2DIAGNOSTIC, 22, -1.011754106571e+00, 3.177816423457e-06, 2.4171e-01, 1.5371e-03, - 2DIAGNOSTIC, 23, -1.011796128219e+00, 4.030454616014e-06, 2.4321e-01, 1.4939e-03, - 2DIAGNOSTIC, 24, -1.011859083846e+00, 5.300273750161e-06, 2.4476e-01, 1.5471e-03, - 2DIAGNOSTIC, 25, -1.011952420893e+00, 7.144176006113e-06, 2.4629e-01, 1.5299e-03, - 2DIAGNOSTIC, 26, -1.012083863099e+00, 9.715595038685e-06, 2.4781e-01, 1.5218e-03, - 2DIAGNOSTIC, 27, -1.013174286452e+00, 2.266857946914e-05, 2.4925e-01, 1.4381e-03, - 2DIAGNOSTIC, 28, -1.013432167711e+00, 3.500852294579e-05, 2.5102e-01, 1.7750e-03, - 2DIAGNOSTIC, 29, -1.013733816491e+00, 4.635255058868e-05, 2.5252e-01, 1.4980e-03, - 2DIAGNOSTIC, 30, -1.013564733591e+00, 5.127395359111e-05, 2.5427e-01, 1.7531e-03, - 2DIAGNOSTIC, 31, -1.013260708095e+00, 4.858663173658e-05, 2.5668e-01, 2.4071e-03, - 2DIAGNOSTIC, 32, -1.014439555830e+00, 5.210635072823e-05, 2.5818e-01, 1.4999e-03, - 2DIAGNOSTIC, 33, -1.014554868336e+00, 5.149452238468e-05, 2.5994e-01, 1.7600e-03, - 2DIAGNOSTIC, 34, -1.014652056056e+00, 4.758971402807e-05, 2.6163e-01, 1.6880e-03, - 2DIAGNOSTIC, 35, -1.014740956464e+00, 4.121647107376e-05, 2.6333e-01, 1.7080e-03, - 2DIAGNOSTIC, 36, -1.014832458231e+00, 3.294055023947e-05, 2.6506e-01, 1.7290e-03, - 2DIAGNOSTIC, 37, -1.013598869858e+00, 2.078169909123e-05, 2.6679e-01, 1.7231e-03, - 2DIAGNOSTIC, 38, -1.014109585043e+00, 1.316871843862e-05, 2.6826e-01, 1.4780e-03, - 2DIAGNOSTIC, 39, -1.014197732880e+00, 7.510657499901e-06, 2.6999e-01, 1.7259e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.825680961556e-01, 1.797693134862e+308, 4.9551e-01, 2.2552e-01, - 2DIAGNOSTIC, 2, -8.821176571149e-01, 1.797693134862e+308, 4.9756e-01, 2.0509e-03, - 2DIAGNOSTIC, 3, -8.851107451160e-01, 1.797693134862e+308, 4.9951e-01, 1.9519e-03, - 2DIAGNOSTIC, 4, -8.864457657552e-01, 1.797693134862e+308, 5.0136e-01, 1.8499e-03, - 2DIAGNOSTIC, 5, -8.875662189481e-01, 1.797693134862e+308, 5.0376e-01, 2.3930e-03, - 2DIAGNOSTIC, 6, -8.874463315857e-01, 1.797693134862e+308, 5.0588e-01, 2.1250e-03, - 2DIAGNOSTIC, 7, -8.879041716083e-01, 1.797693134862e+308, 5.0827e-01, 2.3930e-03, - 2DIAGNOSTIC, 8, -8.883904892467e-01, 1.797693134862e+308, 5.1060e-01, 2.3260e-03, - 2DIAGNOSTIC, 9, -8.884278317458e-01, 1.797693134862e+308, 5.1291e-01, 2.3050e-03, - 2DIAGNOSTIC, 10, -8.888598054354e-01, 4.766485809190e-04, 5.1566e-01, 2.7559e-03, - 2DIAGNOSTIC, 11, -8.891684149292e-01, 3.577350249909e-04, 5.1899e-01, 3.3309e-03, - 2DIAGNOSTIC, 12, -8.911222771840e-01, 2.652794499594e-04, 5.2794e-01, 8.9481e-03, - 2DIAGNOSTIC, 13, -8.911222319373e-01, 2.351228872110e-04, 5.3030e-01, 2.3601e-03, - 2DIAGNOSTIC, 14, -8.911222845010e-01, 2.186599623864e-04, 5.3263e-01, 2.3301e-03, - 2DIAGNOSTIC, 15, -8.911223733515e-01, 2.094195296573e-04, 5.3497e-01, 2.3420e-03, - 2DIAGNOSTIC, 16, -8.911225234990e-01, 1.795214349562e-04, 5.3729e-01, 2.3210e-03, - 2DIAGNOSTIC, 17, -8.911227771174e-01, 1.446702644942e-04, 5.3970e-01, 2.4080e-03, - 2DIAGNOSTIC, 18, -8.911232048834e-01, 1.091970010992e-04, 5.4209e-01, 2.3909e-03, - 2DIAGNOSTIC, 19, -8.911239259436e-01, 6.854654473986e-05, 5.4439e-01, 2.3000e-03, - 2DIAGNOSTIC, 20, -8.911251388394e-01, 3.292113743791e-05, 5.4671e-01, 2.3160e-03, - 2DIAGNOSTIC, 21, -8.911271716783e-01, 1.655971987063e-06, 5.4905e-01, 2.3410e-03, - 2DIAGNOSTIC, 22, -8.911305580964e-01, 1.671288012373e-06, 5.5143e-01, 2.3799e-03, - 2DIAGNOSTIC, 23, -8.911362055376e-01, 1.741528760160e-06, 5.5383e-01, 2.3999e-03, - 2DIAGNOSTIC, 24, -8.911454603408e-01, 1.895202837512e-06, 5.5626e-01, 2.4300e-03, - 2DIAGNOSTIC, 25, -8.911599628728e-01, 2.167753752141e-06, 5.5867e-01, 2.4149e-03, - 2DIAGNOSTIC, 26, -8.911816487220e-01, 2.600642979883e-06, 5.6150e-01, 2.8300e-03, - 2DIAGNOSTIC, 27, -8.912121462230e-01, 3.231575211385e-06, 5.6459e-01, 3.0870e-03, - 2DIAGNOSTIC, 28, -8.912286070471e-01, 3.811045963219e-06, 5.6722e-01, 2.6240e-03, - 2DIAGNOSTIC, 29, -8.910279254097e-01, 1.895678632596e-06, 5.6964e-01, 2.4250e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.739437066052e-01, 1.797693134862e+308, 8.0680e-01, 2.3716e-01, - 2DIAGNOSTIC, 2, -7.749039364890e-01, 1.797693134862e+308, 8.2070e-01, 1.3904e-02, - 2DIAGNOSTIC, 3, -7.756788466391e-01, 1.797693134862e+308, 8.3414e-01, 1.3438e-02, - 2DIAGNOSTIC, 4, -7.766080158754e-01, 1.797693134862e+308, 8.4743e-01, 1.3289e-02, - 2DIAGNOSTIC, 5, -7.776529349975e-01, 1.797693134862e+308, 8.6283e-01, 1.5397e-02, - 2DIAGNOSTIC, 6, -7.783026216156e-01, 1.797693134862e+308, 8.8659e-01, 2.3766e-02, - 2DIAGNOSTIC, 7, -7.782108046269e-01, 1.797693134862e+308, 9.0105e-01, 1.4455e-02, - 2DIAGNOSTIC, 8, -7.782641384315e-01, 1.797693134862e+308, 9.1621e-01, 1.5167e-02, - 2DIAGNOSTIC, 9, -7.782500122974e-01, 1.797693134862e+308, 9.3160e-01, 1.5390e-02, - 2DIAGNOSTIC, 10, -7.782429407956e-01, 3.650513050122e-04, 9.4720e-01, 1.5596e-02, - 2DIAGNOSTIC, 11, -7.782556651523e-01, 2.361178251568e-04, 9.6272e-01, 1.5521e-02, - 2DIAGNOSTIC, 12, -7.782398582709e-01, 1.367023097263e-04, 9.7584e-01, 1.3121e-02, - 2DIAGNOSTIC, 13, -7.782522759356e-01, 6.254518207140e-05, 9.9068e-01, 1.4836e-02, - 2DIAGNOSTIC, 14, -7.782403917525e-01, 1.686677274422e-05, 1.0036e+00, 1.2921e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.453131620917e-01, 1.797693134862e+308, 1.4401e+00, 4.3655e-01, - 2DIAGNOSTIC, 2, -6.462399390253e-01, 1.797693134862e+308, 1.5369e+00, 9.6780e-02, - 2DIAGNOSTIC, 3, -6.469156695182e-01, 1.797693134862e+308, 1.6262e+00, 8.9285e-02, - 2DIAGNOSTIC, 4, -6.471626981479e-01, 1.797693134862e+308, 1.7168e+00, 9.0601e-02, - 2DIAGNOSTIC, 5, -6.473282738848e-01, 1.797693134862e+308, 1.8246e+00, 1.0782e-01, - 2DIAGNOSTIC, 6, -6.474061394157e-01, 1.797693134862e+308, 2.0207e+00, 1.9610e-01, - 2DIAGNOSTIC, 7, -6.474236782633e-01, 1.797693134862e+308, 2.1286e+00, 1.0791e-01, - 2DIAGNOSTIC, 8, -6.474212934888e-01, 1.797693134862e+308, 2.2372e+00, 1.0857e-01, - 2DIAGNOSTIC, 9, -6.474297126422e-01, 1.797693134862e+308, 2.3591e+00, 1.2188e-01, - 2DIAGNOSTIC, 10, -6.474333294880e-01, 1.634813191207e-04, 2.4671e+00, 1.0801e-01, - 2DIAGNOSTIC, 11, -6.474336428006e-01, 7.795278380850e-05, 2.5742e+00, 1.0706e-01, - 2DIAGNOSTIC, 12, -6.474320955700e-01, 3.330569866314e-05, 2.6672e+00, 9.3055e-02, - 2DIAGNOSTIC, 13, -6.474325537491e-01, 1.548083897203e-05, 2.7748e+00, 1.0759e-01, - 2DIAGNOSTIC, 14, -6.474357285864e-01, 6.752907038110e-06, 2.8937e+00, 1.1890e-01, - 2DIAGNOSTIC, 15, -6.474351430496e-01, 3.544557664742e-06, 2.9826e+00, 8.8876e-02, - 2DIAGNOSTIC, 16, -6.474334234949e-01, 2.687485006758e-06, 3.0770e+00, 9.4472e-02, - 2DIAGNOSTIC, 17, -6.474359174987e-01, 2.393405714229e-06, 3.1715e+00, 9.4466e-02, - 2DIAGNOSTIC, 18, -6.474369709747e-01, 2.043838447971e-06, 3.2655e+00, 9.4000e-02, - 2DIAGNOSTIC, 19, -6.474475572813e-01, 2.139984179333e-06, 3.3734e+00, 1.0793e-01, - 2DIAGNOSTIC, 20, -6.474507384545e-01, 2.326719303433e-06, 3.4981e+00, 1.2470e-01, - 2DIAGNOSTIC, 21, -6.474514076416e-01, 2.451380291965e-06, 3.6106e+00, 1.1241e-01, - 2DIAGNOSTIC, 22, -6.474512614859e-01, 2.446850817892e-06, 3.7279e+00, 1.1735e-01, - 2DIAGNOSTIC, 23, -6.474505241131e-01, 2.341314623178e-06, 3.8286e+00, 1.0069e-01, - 2DIAGNOSTIC, 24, -6.474485245761e-01, 2.173960432908e-06, 3.9380e+00, 1.0937e-01, - 2DIAGNOSTIC, 25, -6.474515751325e-01, 1.984463974862e-06, 4.0450e+00, 1.0708e-01, - 2DIAGNOSTIC, 26, -6.474620816866e-01, 1.890452844738e-06, 4.1517e+00, 1.0665e-01, - 2DIAGNOSTIC, 27, -6.474602360225e-01, 1.748813495461e-06, 4.2593e+00, 1.0759e-01, - 2DIAGNOSTIC, 28, -6.474599876403e-01, 1.576048078621e-06, 4.3660e+00, 1.0669e-01, - 2DIAGNOSTIC, 29, -6.474562421838e-01, 1.478700021838e-06, 4.4706e+00, 1.0461e-01, - 2DIAGNOSTIC, 30, -6.474524426184e-01, 1.342098940489e-06, 4.5732e+00, 1.0258e-01, - 2DIAGNOSTIC, 31, -6.474551239657e-01, 1.232859258384e-06, 4.6746e+00, 1.0145e-01, - 2DIAGNOSTIC, 32, -6.474559870767e-01, 1.118740571883e-06, 4.7771e+00, 1.0247e-01, - 2DIAGNOSTIC, 33, -6.474587216101e-01, 1.029450914784e-06, 4.8658e+00, 8.8730e-02, - 2DIAGNOSTIC, 34, -6.474655787500e-01, 1.002758423921e-06, 4.9816e+00, 1.1578e-01, - 2DIAGNOSTIC, 35, -6.474680172470e-01, 1.034957441106e-06, 5.0715e+00, 8.9854e-02, - 2DIAGNOSTIC, 36, -6.474651825013e-01, 1.147107775556e-06, 5.1642e+00, 9.2754e-02, - 2DIAGNOSTIC, 37, -6.474742015947e-01, 1.314286719720e-06, 5.2742e+00, 1.0995e-01, - 2DIAGNOSTIC, 38, -6.474807561050e-01, 1.499679599223e-06, 5.3656e+00, 9.1427e-02, - 2DIAGNOSTIC, 39, -6.474785728792e-01, 1.544511948674e-06, 5.4882e+00, 1.2258e-01, - 2DIAGNOSTIC, 40, -6.474813184929e-01, 1.508344728493e-06, 5.5901e+00, 1.0195e-01, - 2DIAGNOSTIC, 41, -6.474807767703e-01, 1.430177247397e-06, 5.6805e+00, 9.0387e-02, - 2DIAGNOSTIC, 42, -6.474791114447e-01, 1.283743732882e-06, 5.8019e+00, 1.2136e-01, - 2DIAGNOSTIC, 43, -6.474779650218e-01, 1.107369397003e-06, 5.9097e+00, 1.0783e-01, - Elapsed time (stage 1): 6.0410e+00 - - -Total elapsed time: 1.2061e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:35:32 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:35:33 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5561221eb4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [109.153, 59.7173, -109.454] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5561221f0fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3db1319010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5561221ec850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [109.153, 59.7173, -109.454] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5561221e9f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3dadc5a010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x556122203b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [109.153, 59.7173, -109.454] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5561221f0550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3daa59b010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x556122208d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [109.153, 59.7173, -109.454] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556122206c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3da6edc010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55612220af70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [109.153, 59.7173, -109.454] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5561222093a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3da381d010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55612220b540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [109.153, 59.7173, -109.454] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55612220b4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3da015e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.156121562483e-01, 1.797693134862e+308, 2.2492e-01, 2.2492e-01, - 2DIAGNOSTIC, 2, -7.171543896259e-01, 1.797693134862e+308, 2.2709e-01, 2.1729e-03, - 2DIAGNOSTIC, 3, -7.188985828130e-01, 1.797693134862e+308, 2.2927e-01, 2.1780e-03, - 2DIAGNOSTIC, 4, -7.198963723651e-01, 1.797693134862e+308, 2.3140e-01, 2.1269e-03, - 2DIAGNOSTIC, 5, -7.201275821999e-01, 1.797693134862e+308, 2.3379e-01, 2.3911e-03, - 2DIAGNOSTIC, 6, -7.202115321023e-01, 1.797693134862e+308, 2.3616e-01, 2.3711e-03, - 2DIAGNOSTIC, 7, -7.201382033647e-01, 1.797693134862e+308, 2.3822e-01, 2.0621e-03, - 2DIAGNOSTIC, 8, -7.200648787189e-01, 1.797693134862e+308, 2.4031e-01, 2.0919e-03, - 2DIAGNOSTIC, 9, -7.201484580115e-01, 1.797693134862e+308, 2.4236e-01, 2.0490e-03, - 2DIAGNOSTIC, 10, -7.203858570955e-01, 3.325287491248e-04, 2.4471e-01, 2.3489e-03, - 2DIAGNOSTIC, 11, -7.208611280751e-01, 1.875504812934e-04, 2.4867e-01, 3.9589e-03, - 2DIAGNOSTIC, 12, -7.208760907235e-01, 1.000872723621e-04, 2.5099e-01, 2.3181e-03, - 2DIAGNOSTIC, 13, -7.208818497031e-01, 7.004201784197e-05, 2.5348e-01, 2.4951e-03, - 2DIAGNOSTIC, 14, -7.208937581880e-01, 6.660664949863e-05, 2.5589e-01, 2.4049e-03, - 2DIAGNOSTIC, 15, -7.207622281584e-01, 6.010271683306e-05, 2.5829e-01, 2.3968e-03, - 2DIAGNOSTIC, 16, -7.207817849565e-01, 5.159168787269e-05, 2.6146e-01, 3.1691e-03, - 2DIAGNOSTIC, 17, -7.210669662702e-01, 4.450467630661e-05, 2.6852e-01, 7.0670e-03, - 2DIAGNOSTIC, 18, -7.210669648848e-01, 3.261546910449e-05, 2.7064e-01, 2.1138e-03, - 2DIAGNOSTIC, 19, -7.210669679297e-01, 2.092405198281e-05, 2.7276e-01, 2.1279e-03, - 2DIAGNOSTIC, 20, -7.210669730777e-01, 1.316945231482e-05, 2.7487e-01, 2.1060e-03, - 2DIAGNOSTIC, 21, -7.210669817792e-01, 1.398776211886e-05, 2.7703e-01, 2.1570e-03, - 2DIAGNOSTIC, 22, -7.210669964828e-01, 1.370944839315e-05, 2.7935e-01, 2.3229e-03, - 2DIAGNOSTIC, 23, -7.210670213163e-01, 1.236141432608e-05, 2.8161e-01, 2.2600e-03, - 2DIAGNOSTIC, 24, -7.210670632236e-01, 1.043578874486e-05, 2.8386e-01, 2.2500e-03, - 2DIAGNOSTIC, 25, -7.210671338439e-01, 5.779644109236e-06, 2.8616e-01, 2.3041e-03, - 2DIAGNOSTIC, 26, -7.210672525663e-01, 1.232702843967e-06, 2.8841e-01, 2.2418e-03, - 2DIAGNOSTIC, 27, -7.210674513378e-01, 1.192325930433e-06, 2.9060e-01, 2.1980e-03, - 2DIAGNOSTIC, 28, -7.210677818774e-01, 1.158195814768e-06, 2.9283e-01, 2.2290e-03, - 2DIAGNOSTIC, 29, -7.210683252566e-01, 1.131786879660e-06, 2.9503e-01, 2.1930e-03, - 2DIAGNOSTIC, 30, -7.210692015296e-01, 1.115398929767e-06, 2.9723e-01, 2.2039e-03, - 2DIAGNOSTIC, 31, -7.210705712570e-01, 1.112289022775e-06, 2.9970e-01, 2.4722e-03, - 2DIAGNOSTIC, 32, -7.210713733561e-01, 1.111068538145e-06, 3.0193e-01, 2.2309e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.164843456842e-01, 1.797693134862e+308, 5.5131e-01, 2.4937e-01, - 2DIAGNOSTIC, 2, -6.179171554826e-01, 1.797693134862e+308, 5.6594e-01, 1.4632e-02, - 2DIAGNOSTIC, 3, -6.188528885709e-01, 1.797693134862e+308, 5.7977e-01, 1.3832e-02, - 2DIAGNOSTIC, 4, -6.190695471315e-01, 1.797693134862e+308, 5.9345e-01, 1.3679e-02, - 2DIAGNOSTIC, 5, -6.191188762259e-01, 1.797693134862e+308, 6.1089e-01, 1.7439e-02, - 2DIAGNOSTIC, 6, -6.191287732892e-01, 1.797693134862e+308, 6.3054e-01, 1.9651e-02, - 2DIAGNOSTIC, 7, -6.190685544348e-01, 1.797693134862e+308, 6.4636e-01, 1.5817e-02, - 2DIAGNOSTIC, 8, -6.190741490286e-01, 1.797693134862e+308, 6.6175e-01, 1.5390e-02, - 2DIAGNOSTIC, 9, -6.190746067163e-01, 1.797693134862e+308, 6.7748e-01, 1.5731e-02, - 2DIAGNOSTIC, 10, -6.190692578417e-01, 1.755653099260e-04, 6.9164e-01, 1.4164e-02, - 2DIAGNOSTIC, 11, -6.190653340320e-01, 5.759414971662e-05, 7.0576e-01, 1.4113e-02, - 2DIAGNOSTIC, 12, -6.190600612910e-01, 8.175394207804e-06, 7.2131e-01, 1.5551e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.120582043806e-01, 1.797693134862e+308, 1.1022e+00, 3.8094e-01, - 2DIAGNOSTIC, 2, -5.124608772614e-01, 1.797693134862e+308, 1.2012e+00, 9.8927e-02, - 2DIAGNOSTIC, 3, -5.126332966437e-01, 1.797693134862e+308, 1.3012e+00, 1.0007e-01, - 2DIAGNOSTIC, 4, -5.127610585097e-01, 1.797693134862e+308, 1.3972e+00, 9.5983e-02, - 2DIAGNOSTIC, 5, -5.127734498895e-01, 1.797693134862e+308, 1.5087e+00, 1.1150e-01, - 2DIAGNOSTIC, 6, -5.129069073970e-01, 1.797693134862e+308, 1.6813e+00, 1.7260e-01, - 2DIAGNOSTIC, 7, -5.128974690365e-01, 1.797693134862e+308, 1.8263e+00, 1.4501e-01, - 2DIAGNOSTIC, 8, -5.128957435243e-01, 1.797693134862e+308, 1.9502e+00, 1.2388e-01, - 2DIAGNOSTIC, 9, -5.128911125087e-01, 1.797693134862e+308, 2.0697e+00, 1.1951e-01, - 2DIAGNOSTIC, 10, -5.128886340860e-01, 8.501559726018e-05, 2.1821e+00, 1.1238e-01, - 2DIAGNOSTIC, 11, -5.128859637498e-01, 4.295254207921e-05, 2.2805e+00, 9.8412e-02, - 2DIAGNOSTIC, 12, -5.128849982961e-01, 2.270058216657e-05, 2.3877e+00, 1.0715e-01, - 2DIAGNOSTIC, 13, -5.128854557224e-01, 1.107036141679e-05, 2.4822e+00, 9.4514e-02, - 2DIAGNOSTIC, 14, -5.128847129816e-01, 5.392157842066e-06, 2.5768e+00, 9.4584e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.446458766134e-01, 1.797693134862e+308, 3.8399e+00, 1.2631e+00, - 2DIAGNOSTIC, 2, -4.447823622431e-01, 1.797693134862e+308, 4.3833e+00, 5.4347e-01, - 2DIAGNOSTIC, 3, -4.447833670405e-01, 1.797693134862e+308, 5.1398e+00, 7.5643e-01, - 2DIAGNOSTIC, 4, -4.447812578718e-01, 1.797693134862e+308, 5.7824e+00, 6.4260e-01, - 2DIAGNOSTIC, 5, -4.447824078039e-01, 1.797693134862e+308, 6.3953e+00, 6.1292e-01, - 2DIAGNOSTIC, 6, -4.447811356576e-01, 1.797693134862e+308, 7.0078e+00, 6.1255e-01, - 2DIAGNOSTIC, 7, -4.447809853701e-01, 1.797693134862e+308, 7.7082e+00, 7.0040e-01, - 2DIAGNOSTIC, 8, -4.447812361524e-01, 1.797693134862e+308, 8.3471e+00, 6.3889e-01, - 2DIAGNOSTIC, 9, -4.447805787825e-01, 1.797693134862e+308, 8.9437e+00, 5.9657e-01, - 2DIAGNOSTIC, 10, -4.447801193309e-01, 1.154257068545e-05, 9.5589e+00, 6.1526e-01, - 2DIAGNOSTIC, 11, -4.447805055048e-01, 2.558315713927e-06, 1.0121e+01, 5.6178e-01, - 2DIAGNOSTIC, 12, -4.447805785245e-01, 2.370188447842e-06, 1.0820e+01, 6.9955e-01, - 2DIAGNOSTIC, 13, -4.447805722141e-01, 2.287763644554e-06, 1.1440e+01, 6.1972e-01, - 2DIAGNOSTIC, 14, -4.447804436760e-01, 2.127999179188e-06, 1.2065e+01, 6.2529e-01, - 2DIAGNOSTIC, 15, -4.447807570613e-01, 2.067265883268e-06, 1.2696e+01, 6.3048e-01, - 2DIAGNOSTIC, 16, -4.447809491062e-01, 1.975126289078e-06, 1.3602e+01, 9.0632e-01, - 2DIAGNOSTIC, 17, -4.447808378752e-01, 1.884103275535e-06, 1.4159e+01, 5.5717e-01, - 2DIAGNOSTIC, 18, -4.447807598794e-01, 1.809220329330e-06, 1.4789e+01, 6.2968e-01, - 2DIAGNOSTIC, 19, -4.447805575788e-01, 1.710227647472e-06, 1.5344e+01, 5.5537e-01, - 2DIAGNOSTIC, 20, -4.447807541573e-01, 1.608981737206e-06, 1.5966e+01, 6.2200e-01, - 2DIAGNOSTIC, 21, -4.447806318980e-01, 1.523153853808e-06, 1.6716e+01, 7.4965e-01, - 2DIAGNOSTIC, 22, -4.447801178386e-01, 1.431762481650e-06, 1.7622e+01, 9.0576e-01, - 2DIAGNOSTIC, 23, -4.447804556370e-01, 1.359672659317e-06, 1.8522e+01, 8.9983e-01, - 2DIAGNOSTIC, 24, -4.447804592720e-01, 1.291834743254e-06, 1.9336e+01, 8.1488e-01, - 2DIAGNOSTIC, 25, -4.447804753817e-01, 1.240626397975e-06, 2.0231e+01, 8.9416e-01, - 2DIAGNOSTIC, 26, -4.447805945312e-01, 1.204174038032e-06, 2.1327e+01, 1.0961e+00, - 2DIAGNOSTIC, 27, -4.447805829176e-01, 1.169514651164e-06, 2.2424e+01, 1.0970e+00, - 2DIAGNOSTIC, 28, -4.447804733727e-01, 1.133967492087e-06, 2.3320e+01, 8.9617e-01, - 2DIAGNOSTIC, 29, -4.447803461888e-01, 1.093548132505e-06, 2.4225e+01, 9.0490e-01, - 2DIAGNOSTIC, 30, -4.447800733814e-01, 1.054607082725e-06, 2.5022e+01, 7.9683e-01, - 2DIAGNOSTIC, 31, -4.447801510344e-01, 1.018241293969e-06, 2.5824e+01, 8.0260e-01, - Elapsed time (stage 0): 2.6341e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.151734623533e-01, 1.797693134862e+308, 2.4097e-01, 2.4097e-01, - 2DIAGNOSTIC, 2, -7.170970207953e-01, 1.797693134862e+308, 2.4449e-01, 3.5181e-03, - 2DIAGNOSTIC, 3, -7.193241683111e-01, 1.797693134862e+308, 2.4820e-01, 3.7100e-03, - 2DIAGNOSTIC, 4, -7.219046217341e-01, 1.797693134862e+308, 2.5162e-01, 3.4270e-03, - 2DIAGNOSTIC, 5, -7.242316017818e-01, 1.797693134862e+308, 2.5457e-01, 2.9452e-03, - 2DIAGNOSTIC, 6, -7.264144989917e-01, 1.797693134862e+308, 2.5792e-01, 3.3500e-03, - 2DIAGNOSTIC, 7, -7.274478622558e-01, 1.797693134862e+308, 2.6206e-01, 4.1449e-03, - 2DIAGNOSTIC, 8, -7.277225471467e-01, 1.797693134862e+308, 2.6716e-01, 5.0941e-03, - 2DIAGNOSTIC, 9, -7.276672198175e-01, 1.797693134862e+308, 2.7075e-01, 3.5930e-03, - 2DIAGNOSTIC, 10, -7.283212460422e-01, 1.229818045674e-03, 2.7454e-01, 3.7851e-03, - 2DIAGNOSTIC, 11, -7.285374546804e-01, 9.003224345011e-04, 2.7831e-01, 3.7789e-03, - 2DIAGNOSTIC, 12, -7.286137268714e-01, 6.103413059232e-04, 2.8123e-01, 2.9140e-03, - 2DIAGNOSTIC, 13, -7.287376755058e-01, 3.810640076632e-04, 2.8420e-01, 2.9700e-03, - 2DIAGNOSTIC, 14, -7.288428934395e-01, 2.248285495004e-04, 2.8808e-01, 3.8781e-03, - 2DIAGNOSTIC, 15, -7.288859815725e-01, 1.296308509885e-04, 2.9127e-01, 3.1979e-03, - 2DIAGNOSTIC, 16, -7.289140179494e-01, 8.806062506928e-05, 2.9578e-01, 4.5030e-03, - 2DIAGNOSTIC, 17, -7.289260547407e-01, 6.758814565284e-05, 2.9959e-01, 3.8161e-03, - 2DIAGNOSTIC, 18, -7.289372836906e-01, 4.978807012319e-05, 3.0331e-01, 3.7169e-03, - 2DIAGNOSTIC, 19, -7.289387712290e-01, 2.796079897670e-05, 3.0725e-01, 3.9361e-03, - 2DIAGNOSTIC, 20, -7.289394142829e-01, 1.861199049236e-05, 3.1056e-01, 3.3102e-03, - 2DIAGNOSTIC, 21, -7.289414867339e-01, 1.264911067395e-05, 3.1347e-01, 2.9089e-03, - 2DIAGNOSTIC, 22, -7.289437520766e-01, 7.553073181531e-06, 3.1701e-01, 3.5419e-03, - 2DIAGNOSTIC, 23, -7.289458907712e-01, 4.435983307557e-06, 3.2573e-01, 8.7252e-03, - 2DIAGNOSTIC, 24, -7.289458907533e-01, 2.995937959230e-06, 3.3480e-01, 9.0711e-03, - 2DIAGNOSTIC, 25, -7.289458907533e-01, 2.182190047807e-06, 3.3816e-01, 3.3579e-03, - 2DIAGNOSTIC, 26, -7.289458907533e-01, 1.764731290321e-06, 3.4151e-01, 3.3500e-03, - 2DIAGNOSTIC, 27, -7.289458907533e-01, 1.496913960758e-06, 3.4489e-01, 3.3741e-03, - 2DIAGNOSTIC, 28, -7.289458907533e-01, 1.374675284341e-06, 3.4806e-01, 3.1772e-03, - 2DIAGNOSTIC, 29, -7.289458907533e-01, 1.259177985276e-06, 3.5263e-01, 4.5629e-03, - 2DIAGNOSTIC, 30, -7.289458907533e-01, 1.144743474013e-06, 3.5807e-01, 5.4440e-03, - 2DIAGNOSTIC, 31, -7.289458907533e-01, 1.055610333790e-06, 3.6281e-01, 4.7390e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.091490273584e-01, 1.797693134862e+308, 6.3160e-01, 2.6879e-01, - 2DIAGNOSTIC, 2, -6.108907336718e-01, 1.797693134862e+308, 6.4999e-01, 1.8391e-02, - 2DIAGNOSTIC, 3, -6.129857974421e-01, 1.797693134862e+308, 6.7101e-01, 2.1019e-02, - 2DIAGNOSTIC, 4, -6.148945467241e-01, 1.797693134862e+308, 6.9114e-01, 2.0126e-02, - 2DIAGNOSTIC, 5, -6.163551615537e-01, 1.797693134862e+308, 7.1006e-01, 1.8926e-02, - 2DIAGNOSTIC, 6, -6.175361557268e-01, 1.797693134862e+308, 7.3086e-01, 2.0797e-02, - 2DIAGNOSTIC, 7, -6.192570778175e-01, 1.797693134862e+308, 7.6003e-01, 2.9171e-02, - 2DIAGNOSTIC, 8, -6.197526502704e-01, 1.797693134862e+308, 7.8054e-01, 2.0507e-02, - 2DIAGNOSTIC, 9, -6.198255229091e-01, 1.797693134862e+308, 7.9994e-01, 1.9399e-02, - 2DIAGNOSTIC, 10, -6.198682876395e-01, 1.179954817063e-03, 8.2493e-01, 2.4994e-02, - 2DIAGNOSTIC, 11, -6.198959555817e-01, 8.559107069022e-04, 8.4731e-01, 2.2382e-02, - 2DIAGNOSTIC, 12, -6.199121818505e-01, 5.753889353132e-04, 8.6790e-01, 2.0585e-02, - 2DIAGNOSTIC, 13, -6.199467254390e-01, 3.608573474201e-04, 8.8782e-01, 1.9917e-02, - 2DIAGNOSTIC, 14, -6.199616143672e-01, 2.077412664038e-04, 9.1213e-01, 2.4316e-02, - 2DIAGNOSTIC, 15, -6.199735725966e-01, 1.013906382558e-04, 9.4001e-01, 2.7874e-02, - 2DIAGNOSTIC, 16, -6.199762444300e-01, 3.211386724374e-05, 9.5952e-01, 1.9509e-02, - 2DIAGNOSTIC, 17, -6.199837049998e-01, 1.468104913500e-05, 9.8054e-01, 2.1024e-02, - 2DIAGNOSTIC, 18, -6.199860498449e-01, 1.068921819362e-05, 9.9945e-01, 1.8909e-02, - 2DIAGNOSTIC, 19, -6.199905083594e-01, 8.141101719449e-06, 1.0247e+00, 2.5254e-02, - 2DIAGNOSTIC, 20, -6.199919257765e-01, 6.257802157558e-06, 1.0446e+00, 1.9886e-02, - 2DIAGNOSTIC, 21, -6.199943842567e-01, 4.782586663539e-06, 1.0660e+00, 2.1379e-02, - 2DIAGNOSTIC, 22, -6.199984732730e-01, 3.546277711215e-06, 1.0893e+00, 2.3299e-02, - 2DIAGNOSTIC, 23, -6.200025140559e-01, 2.985089804605e-06, 1.1126e+00, 2.3381e-02, - 2DIAGNOSTIC, 24, -6.200031651577e-01, 2.612778177022e-06, 1.1361e+00, 2.3498e-02, - 2DIAGNOSTIC, 25, -6.200032326919e-01, 2.372671648238e-06, 1.1568e+00, 2.0623e-02, - 2DIAGNOSTIC, 26, -6.200033206017e-01, 2.094865473916e-06, 1.1762e+00, 1.9432e-02, - 2DIAGNOSTIC, 27, -6.200034464394e-01, 1.883734894403e-06, 1.2005e+00, 2.4264e-02, - 2DIAGNOSTIC, 28, -6.200034578897e-01, 1.657509647930e-06, 1.2313e+00, 3.0838e-02, - 2DIAGNOSTIC, 29, -6.200034581446e-01, 1.469067694965e-06, 1.2560e+00, 2.4700e-02, - 2DIAGNOSTIC, 30, -6.200034581995e-01, 1.280621974235e-06, 1.2812e+00, 2.5158e-02, - 2DIAGNOSTIC, 31, -6.200034582118e-01, 1.119265536149e-06, 1.3086e+00, 2.7439e-02, - 2DIAGNOSTIC, 32, -6.200034582134e-01, 1.016514412339e-06, 1.3365e+00, 2.7907e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.157838538228e-01, 1.797693134862e+308, 1.8210e+00, 4.8453e-01, - 2DIAGNOSTIC, 2, -5.163116418148e-01, 1.797693134862e+308, 1.9590e+00, 1.3800e-01, - 2DIAGNOSTIC, 3, -5.166364413830e-01, 1.797693134862e+308, 2.1003e+00, 1.4128e-01, - 2DIAGNOSTIC, 4, -5.168262606416e-01, 1.797693134862e+308, 2.2648e+00, 1.6448e-01, - 2DIAGNOSTIC, 5, -5.170744278005e-01, 1.797693134862e+308, 2.7495e+00, 4.8468e-01, - 2DIAGNOSTIC, 6, -5.170744253643e-01, 1.797693134862e+308, 2.8873e+00, 1.3786e-01, - 2DIAGNOSTIC, 7, -5.170744312477e-01, 1.797693134862e+308, 3.0281e+00, 1.4073e-01, - 2DIAGNOSTIC, 8, -5.170744411927e-01, 1.797693134862e+308, 3.1710e+00, 1.4297e-01, - 2DIAGNOSTIC, 9, -5.170744579980e-01, 1.797693134862e+308, 3.3150e+00, 1.4398e-01, - 2DIAGNOSTIC, 10, -5.170744864013e-01, 1.340897078607e-04, 3.4552e+00, 1.4021e-01, - 2DIAGNOSTIC, 11, -5.170745343584e-01, 6.887533091250e-05, 3.5915e+00, 1.3625e-01, - 2DIAGNOSTIC, 12, -5.170746151311e-01, 3.267161546637e-05, 3.7296e+00, 1.3814e-01, - 2DIAGNOSTIC, 13, -5.170747508516e-01, 1.296994087470e-05, 3.8772e+00, 1.4757e-01, - 2DIAGNOSTIC, 14, -5.170749783937e-01, 2.312753032543e-06, 4.0212e+00, 1.4403e-01, - 2DIAGNOSTIC, 15, -5.170753586617e-01, 2.184091569865e-06, 4.1639e+00, 1.4273e-01, - 2DIAGNOSTIC, 16, -5.170759890477e-01, 2.087110949497e-06, 4.3099e+00, 1.4598e-01, - 2DIAGNOSTIC, 17, -5.170770209100e-01, 2.025683766955e-06, 4.4533e+00, 1.4340e-01, - 2DIAGNOSTIC, 18, -5.170786748538e-01, 2.007119817175e-06, 4.6029e+00, 1.4961e-01, - 2DIAGNOSTIC, 19, -5.170811890980e-01, 2.040718506187e-06, 4.7391e+00, 1.3617e-01, - 2DIAGNOSTIC, 20, -5.170848522256e-01, 2.137235842505e-06, 4.8827e+00, 1.4357e-01, - 2DIAGNOSTIC, 21, -5.170901343412e-01, 2.311621427352e-06, 5.0267e+00, 1.4399e-01, - 2DIAGNOSTIC, 22, -5.170964844399e-01, 2.554313908533e-06, 5.1723e+00, 1.4564e-01, - 2DIAGNOSTIC, 23, -5.171025789960e-01, 2.818965462725e-06, 5.3209e+00, 1.4862e-01, - 2DIAGNOSTIC, 24, -5.171088959308e-01, 3.075507498410e-06, 5.4708e+00, 1.4982e-01, - 2DIAGNOSTIC, 25, -5.171181799900e-01, 3.358111330613e-06, 5.6036e+00, 1.3283e-01, - 2DIAGNOSTIC, 26, -5.171358713984e-01, 3.806296438057e-06, 5.7490e+00, 1.4541e-01, - 2DIAGNOSTIC, 27, -5.171535836647e-01, 4.351539798997e-06, 5.9085e+00, 1.5953e-01, - 2DIAGNOSTIC, 28, -5.171595156142e-01, 4.702870432270e-06, 6.1057e+00, 1.9719e-01, - 2DIAGNOSTIC, 29, -5.171622984552e-01, 4.797909617708e-06, 6.2413e+00, 1.3558e-01, - 2DIAGNOSTIC, 30, -5.171642799906e-01, 4.641193777292e-06, 6.3773e+00, 1.3595e-01, - 2DIAGNOSTIC, 31, -5.171675512841e-01, 4.301447171694e-06, 6.5790e+00, 2.0176e-01, - 2DIAGNOSTIC, 32, -5.171684808563e-01, 3.791494265160e-06, 6.7172e+00, 1.3818e-01, - 2DIAGNOSTIC, 33, -5.171685802463e-01, 3.151780099492e-06, 6.8536e+00, 1.3637e-01, - 2DIAGNOSTIC, 34, -5.171688596352e-01, 2.452245181438e-06, 6.9895e+00, 1.3598e-01, - 2DIAGNOSTIC, 35, -5.171695513992e-01, 1.801438398757e-06, 7.1450e+00, 1.5543e-01, - 2DIAGNOSTIC, 36, -5.171698832721e-01, 1.369936124044e-06, 7.2961e+00, 1.5112e-01, - 2DIAGNOSTIC, 37, -5.171702213158e-01, 1.181749282205e-06, 7.5193e+00, 2.2320e-01, - 2DIAGNOSTIC, 38, -5.171703023994e-01, 1.059757273512e-06, 7.6678e+00, 1.4854e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.443816993989e-01, 1.797693134862e+308, 9.2928e+00, 1.6250e+00, - 2DIAGNOSTIC, 2, -4.445734811419e-01, 1.797693134862e+308, 1.0161e+01, 8.6794e-01, - 2DIAGNOSTIC, 3, -4.447062969288e-01, 1.797693134862e+308, 1.1040e+01, 8.7914e-01, - 2DIAGNOSTIC, 4, -4.448309330936e-01, 1.797693134862e+308, 1.2341e+01, 1.3012e+00, - 2DIAGNOSTIC, 5, -4.448840324325e-01, 1.797693134862e+308, 1.3319e+01, 9.7760e-01, - 2DIAGNOSTIC, 6, -4.448858576257e-01, 1.797693134862e+308, 1.4194e+01, 8.7575e-01, - 2DIAGNOSTIC, 7, -4.448897048008e-01, 1.797693134862e+308, 1.5082e+01, 8.8708e-01, - 2DIAGNOSTIC, 8, -4.449026844990e-01, 1.797693134862e+308, 1.5958e+01, 8.7631e-01, - 2DIAGNOSTIC, 9, -4.449215669384e-01, 1.797693134862e+308, 1.6830e+01, 8.7195e-01, - 2DIAGNOSTIC, 10, -4.449984297395e-01, 7.260113103957e-05, 1.7704e+01, 8.7454e-01, - 2DIAGNOSTIC, 11, -4.461627191693e-01, 1.142359560631e-04, 2.0086e+01, 2.3812e+00, - 2DIAGNOSTIC, 12, -4.461624366785e-01, 1.473352141814e-04, 2.1363e+01, 1.2779e+00, - 2DIAGNOSTIC, 13, -4.461623898041e-01, 1.693837082114e-04, 2.2337e+01, 9.7393e-01, - 2DIAGNOSTIC, 14, -4.461619246404e-01, 1.795478817761e-04, 2.3315e+01, 9.7787e-01, - 2DIAGNOSTIC, 15, -4.461618946325e-01, 1.741951496990e-04, 2.4186e+01, 8.7067e-01, - 2DIAGNOSTIC, 16, -4.461618894438e-01, 1.530274849136e-04, 2.5147e+01, 9.6073e-01, - 2DIAGNOSTIC, 17, -4.461617236558e-01, 1.204670000780e-04, 2.6219e+01, 1.0727e+00, - 2DIAGNOSTIC, 18, -4.461616477209e-01, 8.172048777150e-05, 2.7090e+01, 8.7024e-01, - 2DIAGNOSTIC, 19, -4.461614696409e-01, 4.067669495179e-05, 2.8059e+01, 9.6928e-01, - 2DIAGNOSTIC, 20, -4.461615957077e-01, 1.510503203371e-06, 2.8934e+01, 8.7530e-01, - 2DIAGNOSTIC, 21, -4.461611663482e-01, 1.443264788063e-06, 2.9919e+01, 9.8497e-01, - 2DIAGNOSTIC, 22, -4.461613040464e-01, 1.385097823832e-06, 3.0782e+01, 8.6297e-01, - 2DIAGNOSTIC, 23, -4.461612154186e-01, 1.334348329697e-06, 3.1667e+01, 8.8443e-01, - 2DIAGNOSTIC, 24, -4.461616087402e-01, 1.290609673736e-06, 3.2844e+01, 1.1771e+00, - 2DIAGNOSTIC, 25, -4.461615586480e-01, 1.251426035451e-06, 3.3827e+01, 9.8360e-01, - 2DIAGNOSTIC, 26, -4.461611741918e-01, 1.208113616147e-06, 3.4800e+01, 9.7259e-01, - 2DIAGNOSTIC, 27, -4.461610994396e-01, 1.164349951024e-06, 3.5675e+01, 8.7534e-01, - 2DIAGNOSTIC, 28, -4.461610839427e-01, 1.122964896828e-06, 3.6744e+01, 1.0692e+00, - 2DIAGNOSTIC, 29, -4.461611499562e-01, 1.082901185029e-06, 3.7719e+01, 9.7502e-01, - 2DIAGNOSTIC, 30, -4.461610475574e-01, 1.047660291673e-06, 3.8584e+01, 8.6464e-01, - 2DIAGNOSTIC, 31, -4.461609853569e-01, 1.006129155878e-06, 3.9766e+01, 1.1823e+00, - Elapsed time (stage 1): 4.0263e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.250898848520e-01, 1.797693134862e+308, 2.9682e-01, 2.9682e-01, - 1DIAGNOSTIC, 2, -9.368045695585e-01, 1.797693134862e+308, 4.1182e-01, 1.1500e-01, - 1DIAGNOSTIC, 3, -9.444782443157e-01, 1.797693134862e+308, 5.3163e-01, 1.1981e-01, - 1DIAGNOSTIC, 4, -9.502802984637e-01, 1.797693134862e+308, 6.5069e-01, 1.1906e-01, - 1DIAGNOSTIC, 5, -9.545444317932e-01, 1.797693134862e+308, 7.7356e-01, 1.2287e-01, - 1DIAGNOSTIC, 6, -9.576083056416e-01, 1.797693134862e+308, 8.7983e-01, 1.0626e-01, - 1DIAGNOSTIC, 7, -9.603083590807e-01, 1.797693134862e+308, 9.8011e-01, 1.0029e-01, - 1DIAGNOSTIC, 8, -9.627888933560e-01, 1.797693134862e+308, 1.0787e+00, 9.8598e-02, - 1DIAGNOSTIC, 9, -9.646176453311e-01, 1.797693134862e+308, 1.1788e+00, 1.0013e-01, - 1DIAGNOSTIC, 10, -9.652082650920e-01, 2.464498993947e-03, 1.2767e+00, 9.7859e-02, - 1DIAGNOSTIC, 11, -9.656663505307e-01, 1.665041870114e-03, 1.3738e+00, 9.7119e-02, - 1DIAGNOSTIC, 12, -9.658658823361e-01, 1.144103147721e-03, 1.4714e+00, 9.7594e-02, - 1DIAGNOSTIC, 13, -9.664499946901e-01, 7.875503293334e-04, 1.5793e+00, 1.0789e-01, - 1DIAGNOSTIC, 14, -9.660873980162e-01, 5.248148915068e-04, 1.6826e+00, 1.0333e-01, - 1DIAGNOSTIC, 15, -9.665694173802e-01, 3.435046877519e-04, 1.7891e+00, 1.0642e-01, - 1DIAGNOSTIC, 16, -9.661748429130e-01, 2.026326043140e-04, 1.8991e+00, 1.1005e-01, - 1DIAGNOSTIC, 17, -9.668015932445e-01, 1.174520745573e-04, 1.9983e+00, 9.9198e-02, - 1DIAGNOSTIC, 18, -9.663620533241e-01, 6.375326086269e-05, 2.0919e+00, 9.3568e-02, - 1DIAGNOSTIC, 19, -9.670536077183e-01, 4.944569073058e-05, 2.1927e+00, 1.0084e-01, - 1DIAGNOSTIC, 20, -9.665789016120e-01, 3.354662836014e-05, 2.2930e+00, 1.0025e-01, - 1DIAGNOSTIC, 21, -9.673274969056e-01, 3.339268977674e-05, 2.3867e+00, 9.3690e-02, - 1DIAGNOSTIC, 22, -9.668927859612e-01, 2.662282825897e-05, 2.4774e+00, 9.0724e-02, - 1DIAGNOSTIC, 23, -9.675837226127e-01, 3.483151750056e-05, 2.5718e+00, 9.4415e-02, - 1DIAGNOSTIC, 24, -9.669939367571e-01, 2.711594163155e-05, 2.6663e+00, 9.4486e-02, - 1DIAGNOSTIC, 25, -9.676978019571e-01, 3.201420782707e-05, 2.7584e+00, 9.2144e-02, - 1DIAGNOSTIC, 26, -9.671546616023e-01, 2.255660867970e-05, 2.8563e+00, 9.7915e-02, - 1DIAGNOSTIC, 27, -9.678633021050e-01, 2.673971346852e-05, 2.9528e+00, 9.6424e-02, - 1DIAGNOSTIC, 28, -9.671903660099e-01, 1.608501946603e-05, 3.0532e+00, 1.0048e-01, - 1DIAGNOSTIC, 29, -9.679179631334e-01, 1.961781944995e-05, 3.1606e+00, 1.0739e-01, - 1DIAGNOSTIC, 30, -9.673679309837e-01, 1.067434115200e-05, 3.2666e+00, 1.0594e-01, - 1DIAGNOSTIC, 31, -9.680455715122e-01, 1.526325772375e-05, 3.3639e+00, 9.7337e-02, - 1DIAGNOSTIC, 32, -9.673221999074e-01, 7.186802207813e-06, 3.4606e+00, 9.6675e-02, - 1DIAGNOSTIC, 33, -9.680077296095e-01, 1.171088776235e-05, 3.5574e+00, 9.6830e-02, - 1DIAGNOSTIC, 34, -9.673887315977e-01, 4.103493913547e-06, 3.6530e+00, 9.5582e-02, - 1DIAGNOSTIC, 35, -9.680852099032e-01, 8.706665067190e-06, 3.7506e+00, 9.7626e-02, - 1DIAGNOSTIC, 36, -9.673458818399e-01, 1.474713904874e-06, 3.8479e+00, 9.7295e-02, - 1DIAGNOSTIC, 37, -9.680526496309e-01, 6.232413129855e-06, 3.9494e+00, 1.0148e-01, - 1DIAGNOSTIC, 38, -9.674646733012e-01, 1.202939102878e-07, 4.0519e+00, 1.0254e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.279790831652e-01, 1.797693134862e+308, 4.8959e+00, 8.4397e-01, - 1DIAGNOSTIC, 2, -9.321144273078e-01, 1.797693134862e+308, 5.5759e+00, 6.7995e-01, - 1DIAGNOSTIC, 3, -9.358270144676e-01, 1.797693134862e+308, 6.2534e+00, 6.7751e-01, - 1DIAGNOSTIC, 4, -9.391027897709e-01, 1.797693134862e+308, 6.9462e+00, 6.9283e-01, - 1DIAGNOSTIC, 5, -9.415415774446e-01, 1.797693134862e+308, 7.6391e+00, 6.9293e-01, - 1DIAGNOSTIC, 6, -9.440378433877e-01, 1.797693134862e+308, 8.3032e+00, 6.6405e-01, - 1DIAGNOSTIC, 7, -9.460519249720e-01, 1.797693134862e+308, 8.9692e+00, 6.6597e-01, - 1DIAGNOSTIC, 8, -9.478518978027e-01, 1.797693134862e+308, 9.6356e+00, 6.6642e-01, - 1DIAGNOSTIC, 9, -9.494567617999e-01, 1.797693134862e+308, 1.0317e+01, 6.8186e-01, - 1DIAGNOSTIC, 10, -9.507792228572e-01, 1.514078684199e-03, 1.1010e+01, 6.9272e-01, - 1DIAGNOSTIC, 11, -9.519148954304e-01, 1.193047292360e-03, 1.1667e+01, 6.5638e-01, - 1DIAGNOSTIC, 12, -9.527963316279e-01, 9.435891375255e-04, 1.2350e+01, 6.8372e-01, - 1DIAGNOSTIC, 13, -9.535586128851e-01, 7.502228336952e-04, 1.3034e+01, 6.8335e-01, - 1DIAGNOSTIC, 14, -9.542170032938e-01, 6.005483997334e-04, 1.3707e+01, 6.7361e-01, - 1DIAGNOSTIC, 15, -9.548173580405e-01, 4.764030275987e-04, 1.4392e+01, 6.8453e-01, - 1DIAGNOSTIC, 16, -9.554041840341e-01, 3.816875858484e-04, 1.5124e+01, 7.3241e-01, - 1DIAGNOSTIC, 17, -9.559447348653e-01, 3.078334860838e-04, 1.5797e+01, 6.7319e-01, - 1DIAGNOSTIC, 18, -9.564204924727e-01, 2.514615945862e-04, 1.6478e+01, 6.8042e-01, - 1DIAGNOSTIC, 19, -9.568409992273e-01, 2.095435580380e-04, 1.7154e+01, 6.7601e-01, - 1DIAGNOSTIC, 20, -9.572320996418e-01, 1.779010189556e-04, 1.7839e+01, 6.8491e-01, - 1DIAGNOSTIC, 21, -9.576169068108e-01, 1.543172648821e-04, 1.8515e+01, 6.7614e-01, - 1DIAGNOSTIC, 22, -9.579927438097e-01, 1.355216479807e-04, 1.9191e+01, 6.7650e-01, - 1DIAGNOSTIC, 23, -9.583616286996e-01, 1.203816101797e-04, 1.9868e+01, 6.7688e-01, - 1DIAGNOSTIC, 24, -9.586642043094e-01, 1.072018810295e-04, 2.0532e+01, 6.6384e-01, - 1DIAGNOSTIC, 25, -9.589451198081e-01, 9.556820502532e-05, 2.1213e+01, 6.8137e-01, - 1DIAGNOSTIC, 26, -9.591902123759e-01, 8.541602329647e-05, 2.1961e+01, 7.4785e-01, - 1DIAGNOSTIC, 27, -9.594144633900e-01, 7.644999388635e-05, 2.2638e+01, 6.7689e-01, - 1DIAGNOSTIC, 28, -9.596087760668e-01, 6.809013354628e-05, 2.3310e+01, 6.7156e-01, - 1DIAGNOSTIC, 29, -9.597851890618e-01, 6.006846954387e-05, 2.3987e+01, 6.7700e-01, - 1DIAGNOSTIC, 30, -9.599287223009e-01, 5.227073313054e-05, 2.4662e+01, 6.7517e-01, - 1DIAGNOSTIC, 31, -9.600716093089e-01, 4.515609488549e-05, 2.5335e+01, 6.7266e-01, - 1DIAGNOSTIC, 32, -9.601678040321e-01, 3.864441767554e-05, 2.6004e+01, 6.6929e-01, - 1DIAGNOSTIC, 33, -9.602885637538e-01, 3.334488806811e-05, 2.6685e+01, 6.8113e-01, - 1DIAGNOSTIC, 34, -9.601002513937e-01, 2.623991654885e-05, 2.7361e+01, 6.7583e-01, - 1DIAGNOSTIC, 35, -9.600480004346e-01, 1.912018873724e-05, 2.8037e+01, 6.7588e-01, - 1DIAGNOSTIC, 36, -9.599694835291e-01, 1.202016459823e-05, 2.8714e+01, 6.7692e-01, - 1DIAGNOSTIC, 37, -9.599771184808e-01, 6.074194737377e-06, 2.9426e+01, 7.1236e-01, - 1DIAGNOSTIC, 38, -9.599179879865e-01, 9.707915306842e-07, 3.0114e+01, 6.8784e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.097147435094e-01, 1.797693134862e+308, 3.5878e+01, 5.7639e+00, - 1DIAGNOSTIC, 2, -9.129034942239e-01, 1.797693134862e+308, 4.1244e+01, 5.3663e+00, - 1DIAGNOSTIC, 3, -9.162340099459e-01, 1.797693134862e+308, 4.6659e+01, 5.4148e+00, - 1DIAGNOSTIC, 4, -9.192509666314e-01, 1.797693134862e+308, 5.2064e+01, 5.4054e+00, - 1DIAGNOSTIC, 5, -9.220210830167e-01, 1.797693134862e+308, 5.7471e+01, 5.4071e+00, - 1DIAGNOSTIC, 6, -9.245146352339e-01, 1.797693134862e+308, 6.2962e+01, 5.4905e+00, - 1DIAGNOSTIC, 7, -9.267736068852e-01, 1.797693134862e+308, 6.8379e+01, 5.4176e+00, - 1DIAGNOSTIC, 8, -9.288786703231e-01, 1.797693134862e+308, 7.3834e+01, 5.4549e+00, - 1DIAGNOSTIC, 9, -9.306642631552e-01, 1.797693134862e+308, 7.9322e+01, 5.4873e+00, - 1DIAGNOSTIC, 10, -9.322534767806e-01, 1.570307970681e-03, 8.4758e+01, 5.4362e+00, - 1DIAGNOSTIC, 11, -9.334956274098e-01, 1.294986722502e-03, 9.0260e+01, 5.5021e+00, - 1DIAGNOSTIC, 12, -9.345644360643e-01, 1.057823427948e-03, 9.5669e+01, 5.4087e+00, - 1DIAGNOSTIC, 13, -9.356416900768e-01, 8.651747929998e-04, 1.0112e+02, 5.4550e+00, - 1DIAGNOSTIC, 14, -9.365714924702e-01, 7.073363509864e-04, 1.0650e+02, 5.3717e+00, - 1DIAGNOSTIC, 15, -9.372598025248e-01, 5.762287542707e-04, 1.1193e+02, 5.4345e+00, - 1DIAGNOSTIC, 16, -9.378721527174e-01, 4.679323595399e-04, 1.1749e+02, 5.5582e+00, - 1DIAGNOSTIC, 17, -9.384046189945e-01, 3.793128811569e-04, 1.2302e+02, 5.5281e+00, - 1DIAGNOSTIC, 18, -9.388761287970e-01, 3.090186747285e-04, 1.2846e+02, 5.4473e+00, - 1DIAGNOSTIC, 19, -9.392961007642e-01, 2.527218582777e-04, 1.3395e+02, 5.4870e+00, - 1DIAGNOSTIC, 20, -9.396730296488e-01, 2.085365900465e-04, 1.3944e+02, 5.4902e+00, - 1DIAGNOSTIC, 21, -9.400109978698e-01, 1.720962811246e-04, 1.4491e+02, 5.4663e+00, - 1DIAGNOSTIC, 22, -9.403169564155e-01, 1.418898976215e-04, 1.5038e+02, 5.4774e+00, - 1DIAGNOSTIC, 23, -9.405983958330e-01, 1.189880674304e-04, 1.5593e+02, 5.5460e+00, - 1DIAGNOSTIC, 24, -9.408569809451e-01, 1.019385862738e-04, 1.6141e+02, 5.4824e+00, - 1DIAGNOSTIC, 25, -9.410957095217e-01, 8.798893587454e-05, 1.6696e+02, 5.5433e+00, - 1DIAGNOSTIC, 26, -9.413195914647e-01, 7.665633727973e-05, 1.7245e+02, 5.4910e+00, - 1DIAGNOSTIC, 27, -9.415295903667e-01, 6.734611612811e-05, 1.7789e+02, 5.4447e+00, - 1DIAGNOSTIC, 28, -9.417296914850e-01, 5.968569276641e-05, 1.8334e+02, 5.4487e+00, - 1DIAGNOSTIC, 29, -9.419126650227e-01, 5.328303939324e-05, 1.8876e+02, 5.4167e+00, - 1DIAGNOSTIC, 30, -9.420788136616e-01, 4.782241648668e-05, 1.9417e+02, 5.4174e+00, - 1DIAGNOSTIC, 31, -9.422342573168e-01, 4.307878707261e-05, 1.9959e+02, 5.4175e+00, - 1DIAGNOSTIC, 32, -9.423761763035e-01, 3.885585400304e-05, 2.0502e+02, 5.4310e+00, - 1DIAGNOSTIC, 33, -9.425074756751e-01, 3.505778953979e-05, 2.1046e+02, 5.4399e+00, - 1DIAGNOSTIC, 34, -9.426246318428e-01, 3.156836131443e-05, 2.1587e+02, 5.4047e+00, - 1DIAGNOSTIC, 35, -9.427346264855e-01, 2.836365598100e-05, 2.2128e+02, 5.4163e+00, - 1DIAGNOSTIC, 36, -9.428306602637e-01, 2.539610663256e-05, 2.2673e+02, 5.4447e+00, - 1DIAGNOSTIC, 37, -9.429195129686e-01, 2.268173115343e-05, 2.3216e+02, 5.4286e+00, - 1DIAGNOSTIC, 38, -9.430010699009e-01, 2.025806148534e-05, 2.3756e+02, 5.4077e+00, - 1DIAGNOSTIC, 39, -9.430733304868e-01, 1.807299010259e-05, 2.4299e+02, 5.4232e+00, - 1DIAGNOSTIC, 40, -9.431427264587e-01, 1.611940309921e-05, 2.4840e+02, 5.4107e+00, - 1DIAGNOSTIC, 41, -9.432082294458e-01, 1.441634904029e-05, 2.5386e+02, 5.4652e+00, - 1DIAGNOSTIC, 42, -9.432672982426e-01, 1.292735657423e-05, 2.5929e+02, 5.4223e+00, - 1DIAGNOSTIC, 43, -9.433244202675e-01, 1.166047975566e-05, 2.6475e+02, 5.4611e+00, - 1DIAGNOSTIC, 44, -9.433796264714e-01, 1.058205389763e-05, 2.7017e+02, 5.4232e+00, - 1DIAGNOSTIC, 45, -9.434286113545e-01, 9.668276003766e-06, 2.7562e+02, 5.4464e+00, - 1DIAGNOSTIC, 46, -9.434686445967e-01, 8.823250202822e-06, 2.8101e+02, 5.3971e+00, - 1DIAGNOSTIC, 47, -9.435111291235e-01, 8.074795728879e-06, 2.8649e+02, 5.4721e+00, - 1DIAGNOSTIC, 48, -9.435479175798e-01, 7.388032456920e-06, 2.9188e+02, 5.3888e+00, - 1DIAGNOSTIC, 49, -9.435816556195e-01, 6.732568384033e-06, 2.9734e+02, 5.4631e+00, - 1DIAGNOSTIC, 50, -9.436142616693e-01, 6.131809946387e-06, 3.0275e+02, 5.4162e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.039066049819e-01, 1.797693134862e+308, 3.4762e+02, 4.4865e+01, - 1DIAGNOSTIC, 2, -9.047371155210e-01, 1.797693134862e+308, 3.9187e+02, 4.4251e+01, - 1DIAGNOSTIC, 3, -9.059663154810e-01, 1.797693134862e+308, 4.3607e+02, 4.4196e+01, - 1DIAGNOSTIC, 4, -9.071522326802e-01, 1.797693134862e+308, 4.8015e+02, 4.4082e+01, - 1DIAGNOSTIC, 5, -9.083076408281e-01, 1.797693134862e+308, 5.2441e+02, 4.4261e+01, - 1DIAGNOSTIC, 6, -9.095077044615e-01, 1.797693134862e+308, 5.7114e+02, 4.6733e+01, - 1DIAGNOSTIC, 7, -9.107074314730e-01, 1.797693134862e+308, 6.1538e+02, 4.4240e+01, - 1DIAGNOSTIC, 8, -9.119140643058e-01, 1.797693134862e+308, 6.5960e+02, 4.4221e+01, - 1DIAGNOSTIC, 9, -9.130831927174e-01, 1.797693134862e+308, 7.0395e+02, 4.4344e+01, - 1DIAGNOSTIC, 10, -9.141759873191e-01, 7.409368141940e-04, 7.4841e+02, 4.4467e+01, - 1DIAGNOSTIC, 11, -9.151883617710e-01, 6.752865920770e-04, 7.9296e+02, 4.4550e+01, - 1DIAGNOSTIC, 12, -9.160321178606e-01, 6.031799979063e-04, 8.3732e+02, 4.4356e+01, - 1DIAGNOSTIC, 13, -9.169273714075e-01, 5.384349179982e-04, 8.8183e+02, 4.4505e+01, - 1DIAGNOSTIC, 14, -9.176687408989e-01, 4.766705205491e-04, 9.2644e+02, 4.4616e+01, - 1DIAGNOSTIC, 15, -9.183527462739e-01, 4.176322374975e-04, 9.7099e+02, 4.4547e+01, - 1DIAGNOSTIC, 16, -9.188517484246e-01, 3.606084850016e-04, 1.0162e+03, 4.5178e+01, - 1DIAGNOSTIC, 17, -9.193770390102e-01, 3.086069172777e-04, 1.0608e+03, 4.4683e+01, - 1DIAGNOSTIC, 18, -9.197384514046e-01, 2.608237822803e-04, 1.1058e+03, 4.4925e+01, - 1DIAGNOSTIC, 19, -9.200624611146e-01, 2.182412910777e-04, 1.1502e+03, 4.4470e+01, - 1DIAGNOSTIC, 20, -9.203478058762e-01, 1.810034096299e-04, 1.1948e+03, 4.4587e+01, - Elapsed time (stage 2): 1195 - - -Total elapsed time: 1262 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:10 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:10 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:13 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:17 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:20 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 11306 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:20 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:23 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:23 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 11353 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:23 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/anat/sub-PNC001_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:26 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 11410 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:27 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 11415 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:57:27 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:01 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:02 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:02 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:03 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:04 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:06 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:06 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:07 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:08 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:10 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:10 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:10 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:10 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:11 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:11 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:11 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/surf/sub-PNC001_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC001_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC001 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:32 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03/sub-PNC001_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC001 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:32 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC001 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:32 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC001_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC001 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:33 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12421 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:35 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:35 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc/sub-PNC001_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/xfm/sub-PNC001_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12462 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:36 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:36 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC001_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC001_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 90.217 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/logs/proc_func_18-03-2024-10150.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:42 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC001 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC001/ses-03/QC/sub-PNC001_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/2376_micapipe_proc-func_sub-PNC001_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC001* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 90.250 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC001_ses-03 -========================reprocessing without filter=================== -sub-PNC002_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC002 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC002 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC002 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC002 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:58 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 02:58:58 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-1_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:01:05 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:03:10 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:03:24 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.60 (mm) at sub-brick 0 -++ Max delta displ in automask = 0.35 (mm) at sub-brick 170 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:16:22 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:16:40 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-2_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:18:50 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:21:00 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-01/func/sub-PNC002_ses-01_task-rest_echo-3_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:23:14 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.063 -3.485 2.889 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = 0.114 -6.442 5.377 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.8 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:27:59 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:28:27 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x56456e9336f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.8983, 1.9] - Origin: [110.102, 43.5788, -137.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.8983 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56456e7aa730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56456e94a320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x56456e936fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [77.8093, 111.5, -144.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56456e93ce10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56456f147230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x56456f1455c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.8983, 1.9] - Origin: [110.102, 43.5788, -137.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.8983 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56456e9393f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56456fc71450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x56456f143da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [77.8093, 111.5, -144.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56456e940360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56457046b780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.760778033437e-01, 1.797693134862e+308, 4.3955e-02, 4.3955e-02, - 2DIAGNOSTIC, 2, -6.771459668956e-01, 1.797693134862e+308, 4.5247e-02, 1.2920e-03, - 2DIAGNOSTIC, 3, -6.803471601733e-01, 1.797693134862e+308, 4.6518e-02, 1.2710e-03, - 2DIAGNOSTIC, 4, -6.938986899023e-01, 1.797693134862e+308, 4.8140e-02, 1.6220e-03, - 2DIAGNOSTIC, 5, -7.102924800985e-01, 1.797693134862e+308, 4.9771e-02, 1.6310e-03, - 2DIAGNOSTIC, 6, -7.116123628713e-01, 1.797693134862e+308, 5.1395e-02, 1.6239e-03, - 2DIAGNOSTIC, 7, -7.149203339307e-01, 1.797693134862e+308, 5.4002e-02, 2.6069e-03, - 2DIAGNOSTIC, 8, -7.180281743584e-01, 1.797693134862e+308, 5.5938e-02, 1.9360e-03, - 2DIAGNOSTIC, 9, -7.182453512936e-01, 1.797693134862e+308, 5.7461e-02, 1.5230e-03, - 2DIAGNOSTIC, 10, -7.190310609972e-01, 4.673366001767e-03, 5.9343e-02, 1.8821e-03, - 2DIAGNOSTIC, 11, -7.210624019956e-01, 3.636509743172e-03, 6.0856e-02, 1.5130e-03, - 2DIAGNOSTIC, 12, -7.223712293133e-01, 2.538115221954e-03, 6.2373e-02, 1.5168e-03, - 2DIAGNOSTIC, 13, -7.230217290598e-01, 1.495776477313e-03, 6.3898e-02, 1.5249e-03, - 2DIAGNOSTIC, 14, -7.251599163506e-01, 9.088124947253e-04, 6.5380e-02, 1.4820e-03, - 2DIAGNOSTIC, 15, -7.476158398452e-01, 1.354437414880e-03, 6.7110e-02, 1.7300e-03, - 2DIAGNOSTIC, 16, -7.497794077624e-01, 1.687032932471e-03, 6.8810e-02, 1.7009e-03, - 2DIAGNOSTIC, 17, -7.553020755212e-01, 2.032664946580e-03, 7.1034e-02, 2.2240e-03, - 2DIAGNOSTIC, 18, -7.620592632145e-01, 2.372060233488e-03, 7.3236e-02, 2.2020e-03, - 2DIAGNOSTIC, 19, -7.651980461514e-01, 2.519859646256e-03, 7.4795e-02, 1.5590e-03, - 2DIAGNOSTIC, 20, -7.735533379991e-01, 2.590164122260e-03, 7.6485e-02, 1.6899e-03, - 2DIAGNOSTIC, 21, -7.768005561969e-01, 2.506661001479e-03, 7.7952e-02, 1.4670e-03, - 2DIAGNOSTIC, 22, -7.782664681387e-01, 2.252553994318e-03, 7.9676e-02, 1.7240e-03, - 2DIAGNOSTIC, 23, -7.789295925192e-01, 1.838081035840e-03, 8.1153e-02, 1.4770e-03, - 2DIAGNOSTIC, 24, -7.800606162339e-01, 1.331950683314e-03, 8.3549e-02, 2.3959e-03, - 2DIAGNOSTIC, 25, -7.808150782065e-01, 1.102700318524e-03, 8.5021e-02, 1.4720e-03, - 2DIAGNOSTIC, 26, -7.812601001445e-01, 8.258335611603e-04, 8.6460e-02, 1.4391e-03, - 2DIAGNOSTIC, 27, -7.814065703060e-01, 5.734324904516e-04, 8.7928e-02, 1.4679e-03, - 2DIAGNOSTIC, 28, -7.815588918612e-01, 3.818470441853e-04, 8.9412e-02, 1.4839e-03, - 2DIAGNOSTIC, 29, -7.805234623640e-01, 1.935576760381e-04, 9.1368e-02, 1.9560e-03, - 2DIAGNOSTIC, 30, -7.819186814238e-01, 1.241348608804e-04, 9.3317e-02, 1.9491e-03, - 2DIAGNOSTIC, 31, -7.819610343824e-01, 8.741974811483e-05, 9.4801e-02, 1.4839e-03, - 2DIAGNOSTIC, 32, -7.824956339246e-01, 6.881411506712e-05, 9.6534e-02, 1.7328e-03, - 2DIAGNOSTIC, 33, -7.813803798257e-01, 3.967013088785e-05, 9.8020e-02, 1.4861e-03, - 2DIAGNOSTIC, 34, -7.814445775950e-01, 2.244324198834e-05, 9.9534e-02, 1.5140e-03, - 2DIAGNOSTIC, 35, -7.829141320740e-01, 2.797592796006e-05, 1.0173e-01, 2.1949e-03, - 2DIAGNOSTIC, 36, -7.818105324542e-01, 2.276557927756e-05, 1.0321e-01, 1.4811e-03, - 2DIAGNOSTIC, 37, -7.819059995005e-01, 1.877616104405e-05, 1.0516e-01, 1.9529e-03, - 2DIAGNOSTIC, 38, -7.820494740773e-01, 1.696630504154e-05, 1.0690e-01, 1.7359e-03, - 2DIAGNOSTIC, 39, -7.823060374009e-01, 5.641543481701e-06, 1.0888e-01, 1.9808e-03, - 2DIAGNOSTIC, 40, -7.823343049113e-01, 7.538036131249e-06, 1.1060e-01, 1.7211e-03, - 2DIAGNOSTIC, 41, -7.823396961842e-01, 9.042518554745e-06, 1.1213e-01, 1.5271e-03, - 2DIAGNOSTIC, 42, -7.823416755193e-01, 1.507160581993e-05, 1.1358e-01, 1.4489e-03, - 2DIAGNOSTIC, 43, -7.823548937471e-01, 9.742023419603e-06, 1.1506e-01, 1.4861e-03, - 2DIAGNOSTIC, 44, -7.823919505120e-01, 4.166666449659e-06, 1.1794e-01, 2.8791e-03, - 2DIAGNOSTIC, 45, -7.823939064302e-01, 1.109665651752e-05, 1.1990e-01, 1.9550e-03, - 2DIAGNOSTIC, 46, -7.823939836565e-01, 7.735755113723e-06, 1.2159e-01, 1.6968e-03, - 2DIAGNOSTIC, 47, -7.823940261652e-01, 4.614129169925e-06, 1.2332e-01, 1.7281e-03, - 2DIAGNOSTIC, 48, -7.823940901536e-01, 2.317842829357e-06, 1.2478e-01, 1.4610e-03, - 2DIAGNOSTIC, 49, -7.823943345253e-01, 1.917096404604e-06, 1.2625e-01, 1.4670e-03, - 2DIAGNOSTIC, 50, -7.823953737723e-01, 1.632462822060e-06, 1.2770e-01, 1.4482e-03, - 2DIAGNOSTIC, 51, -7.823985627712e-01, 1.333768249030e-06, 1.2914e-01, 1.4460e-03, - 2DIAGNOSTIC, 52, -7.824053086761e-01, 1.043693245727e-06, 1.3061e-01, 1.4689e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.768371746648e-01, 1.797693134862e+308, 1.7762e-01, 4.7007e-02, - 2DIAGNOSTIC, 2, -3.757914997991e-01, 1.797693134862e+308, 1.8046e-01, 2.8360e-03, - 2DIAGNOSTIC, 3, -3.761686490976e-01, 1.797693134862e+308, 1.8325e-01, 2.7912e-03, - 2DIAGNOSTIC, 4, -3.765740656842e-01, 1.797693134862e+308, 1.8619e-01, 2.9440e-03, - 2DIAGNOSTIC, 5, -3.770619383515e-01, 1.797693134862e+308, 1.8846e-01, 2.2671e-03, - 2DIAGNOSTIC, 6, -3.773960440251e-01, 1.797693134862e+308, 1.9058e-01, 2.1181e-03, - 2DIAGNOSTIC, 7, -3.791407486609e-01, 1.797693134862e+308, 1.9278e-01, 2.2058e-03, - 2DIAGNOSTIC, 8, -3.833517040501e-01, 1.797693134862e+308, 1.9604e-01, 3.2570e-03, - 2DIAGNOSTIC, 9, -3.839615922977e-01, 1.797693134862e+308, 1.9891e-01, 2.8691e-03, - 2DIAGNOSTIC, 10, -3.846061647198e-01, 1.592844775775e-03, 2.0126e-01, 2.3549e-03, - 2DIAGNOSTIC, 11, -3.884828096541e-01, 1.939182611243e-03, 2.0366e-01, 2.3930e-03, - 2DIAGNOSTIC, 12, -3.936456156630e-01, 2.298312610201e-03, 2.0600e-01, 2.3479e-03, - 2DIAGNOSTIC, 13, -3.979477813024e-01, 2.649465686861e-03, 2.0869e-01, 2.6851e-03, - 2DIAGNOSTIC, 14, -3.991754946196e-01, 2.794243535124e-03, 2.1142e-01, 2.7280e-03, - 2DIAGNOSTIC, 15, -4.010747818052e-01, 2.789015208112e-03, 2.1373e-01, 2.3160e-03, - 2DIAGNOSTIC, 16, -4.100913554585e-01, 2.953699771723e-03, 2.1621e-01, 2.4772e-03, - 2DIAGNOSTIC, 17, -4.289822198486e-01, 3.687523007189e-03, 2.1872e-01, 2.5051e-03, - 2DIAGNOSTIC, 18, -4.940654496093e-01, 6.711048573254e-03, 2.2150e-01, 2.7869e-03, - 2DIAGNOSTIC, 19, -5.362638583981e-01, 1.021913467444e-02, 2.2437e-01, 2.8720e-03, - 2DIAGNOSTIC, 20, -5.658461137834e-01, 1.332986998397e-02, 2.2751e-01, 3.1400e-03, - 2DIAGNOSTIC, 21, -5.807281354739e-01, 1.541480012129e-02, 2.3006e-01, 2.5420e-03, - 2DIAGNOSTIC, 22, -6.209375150702e-01, 1.712832444659e-02, 2.3250e-01, 2.4478e-03, - 2DIAGNOSTIC, 23, -6.246895729749e-01, 1.723231792658e-02, 2.3564e-01, 3.1362e-03, - 2DIAGNOSTIC, 24, -6.298686675676e-01, 1.589834471712e-02, 2.3894e-01, 3.3021e-03, - 2DIAGNOSTIC, 25, -6.325367399515e-01, 1.337866442995e-02, 2.4281e-01, 3.8722e-03, - 2DIAGNOSTIC, 26, -6.327940642800e-01, 1.011898003447e-02, 2.4509e-01, 2.2759e-03, - 2DIAGNOSTIC, 27, -6.331012434091e-01, 6.647924842994e-03, 2.4773e-01, 2.6369e-03, - 2DIAGNOSTIC, 28, -6.332904270830e-01, 4.279614109740e-03, 2.5011e-01, 2.3861e-03, - 2DIAGNOSTIC, 29, -6.334627791882e-01, 2.597270195299e-03, 2.5238e-01, 2.2709e-03, - 2DIAGNOSTIC, 30, -6.333593709166e-01, 1.399989988911e-03, 2.5468e-01, 2.2941e-03, - 2DIAGNOSTIC, 31, -6.334721300408e-01, 4.350370997198e-04, 2.5725e-01, 2.5711e-03, - 2DIAGNOSTIC, 32, -6.337347508340e-01, 2.382468130756e-04, 2.6014e-01, 2.8908e-03, - 2DIAGNOSTIC, 33, -6.338558604238e-01, 9.952418723154e-05, 2.6276e-01, 2.6240e-03, - 2DIAGNOSTIC, 34, -6.337951500007e-01, 4.631059794603e-05, 2.6505e-01, 2.2891e-03, - 2DIAGNOSTIC, 35, -6.337460073364e-01, 3.500945708647e-05, 2.6735e-01, 2.2931e-03, - 2DIAGNOSTIC, 36, -6.337727615352e-01, 2.566003433972e-05, 2.6964e-01, 2.2912e-03, - 2DIAGNOSTIC, 37, -6.338088116519e-01, 1.958745734936e-05, 2.7222e-01, 2.5799e-03, - 2DIAGNOSTIC, 38, -6.338527092003e-01, 1.542179336275e-05, 2.7455e-01, 2.3339e-03, - 2DIAGNOSTIC, 39, -6.335953140191e-01, 9.082929393230e-06, 2.7684e-01, 2.2910e-03, - 2DIAGNOSTIC, 40, -6.336892404018e-01, 2.389038646751e-06, 2.8006e-01, 3.2170e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.699857512081e-01, 1.797693134862e+308, 3.4919e-01, 6.9135e-02, - 2DIAGNOSTIC, 2, -4.704965054798e-01, 1.797693134862e+308, 3.6126e-01, 1.2066e-02, - 2DIAGNOSTIC, 3, -4.714984290956e-01, 1.797693134862e+308, 3.7318e-01, 1.1920e-02, - 2DIAGNOSTIC, 4, -4.734928212551e-01, 1.797693134862e+308, 3.8537e-01, 1.2193e-02, - 2DIAGNOSTIC, 5, -4.758601991558e-01, 1.797693134862e+308, 3.9814e-01, 1.2771e-02, - 2DIAGNOSTIC, 6, -4.777049475178e-01, 1.797693134862e+308, 4.1174e-01, 1.3592e-02, - 2DIAGNOSTIC, 7, -4.808881233556e-01, 1.797693134862e+308, 4.2675e-01, 1.5013e-02, - 2DIAGNOSTIC, 8, -4.825298379574e-01, 1.797693134862e+308, 4.4649e-01, 1.9743e-02, - 2DIAGNOSTIC, 9, -4.826174951460e-01, 1.797693134862e+308, 4.6008e-01, 1.3583e-02, - 2DIAGNOSTIC, 10, -4.828490801635e-01, 2.086807296251e-03, 4.7211e-01, 1.2033e-02, - 2DIAGNOSTIC, 11, -4.830601929964e-01, 1.763369128692e-03, 4.8398e-01, 1.1872e-02, - 2DIAGNOSTIC, 12, -4.834252774678e-01, 1.378338081916e-03, 4.9683e-01, 1.2847e-02, - 2DIAGNOSTIC, 13, -4.835069661030e-01, 9.766466312966e-04, 5.0803e-01, 1.1201e-02, - 2DIAGNOSTIC, 14, -4.835390059620e-01, 6.305816612186e-04, 5.1896e-01, 1.0929e-02, - 2DIAGNOSTIC, 15, -4.838015410087e-01, 3.783144788868e-04, 5.3291e-01, 1.3949e-02, - 2DIAGNOSTIC, 16, -4.838839134457e-01, 1.917907318935e-04, 5.4539e-01, 1.2487e-02, - 2DIAGNOSTIC, 17, -4.839128577863e-01, 1.202383600452e-04, 5.5806e-01, 1.2668e-02, - 2DIAGNOSTIC, 18, -4.839541294870e-01, 1.013304916824e-04, 5.7203e-01, 1.3964e-02, - 2DIAGNOSTIC, 19, -4.840214266771e-01, 8.005274546564e-05, 5.8854e-01, 1.6518e-02, - 2DIAGNOSTIC, 20, -4.840194315699e-01, 6.025247054754e-05, 5.9935e-01, 1.0805e-02, - 2DIAGNOSTIC, 21, -4.840526705398e-01, 4.349453584605e-05, 6.1081e-01, 1.1458e-02, - 2DIAGNOSTIC, 22, -4.840733712662e-01, 3.476392637791e-05, 6.2163e-01, 1.0826e-02, - 2DIAGNOSTIC, 23, -4.840959332130e-01, 2.642123380906e-05, 6.3521e-01, 1.3578e-02, - 2DIAGNOSTIC, 24, -4.840987862750e-01, 1.711482268764e-05, 6.4843e-01, 1.3222e-02, - 2DIAGNOSTIC, 25, -4.840966416448e-01, 1.320297708236e-05, 6.5889e-01, 1.0454e-02, - 2DIAGNOSTIC, 26, -4.840964688714e-01, 1.035393578792e-05, 6.6921e-01, 1.0323e-02, - 2DIAGNOSTIC, 27, -4.841125425012e-01, 7.822198415275e-06, 6.8091e-01, 1.1698e-02, - 2DIAGNOSTIC, 28, -4.841163348956e-01, 5.746586071886e-06, 6.9420e-01, 1.3291e-02, - 2DIAGNOSTIC, 29, -4.841162620546e-01, 4.763945785226e-06, 7.0763e-01, 1.3429e-02, - 2DIAGNOSTIC, 30, -4.841091866774e-01, 3.322625637785e-06, 7.1947e-01, 1.1847e-02, - 2DIAGNOSTIC, 31, -4.841060030602e-01, 2.332169252488e-06, 7.3009e-01, 1.0618e-02, - 2DIAGNOSTIC, 32, -4.841039296358e-01, 1.607040902143e-06, 7.4069e-01, 1.0594e-02, - 2DIAGNOSTIC, 33, -4.841086150750e-01, 1.349621185982e-06, 7.5186e-01, 1.1169e-02, - 2DIAGNOSTIC, 34, -4.841214401617e-01, 1.345387895042e-06, 7.6395e-01, 1.2097e-02, - 2DIAGNOSTIC, 35, -4.841329941121e-01, 1.462236248487e-06, 7.7449e-01, 1.0540e-02, - 2DIAGNOSTIC, 36, -4.841573390408e-01, 1.909261386122e-06, 7.8476e-01, 1.0264e-02, - 2DIAGNOSTIC, 37, -4.842050411100e-01, 3.242393696815e-06, 7.9658e-01, 1.1826e-02, - 2DIAGNOSTIC, 38, -4.842587214377e-01, 5.152473933057e-06, 8.0744e-01, 1.0858e-02, - 2DIAGNOSTIC, 39, -4.842822874332e-01, 6.897615434116e-06, 8.1772e-01, 1.0280e-02, - 2DIAGNOSTIC, 40, -4.844727568624e-01, 1.068584450894e-05, 8.3355e-01, 1.5828e-02, - 2DIAGNOSTIC, 41, -4.844953061828e-01, 1.355728637089e-05, 8.4362e-01, 1.0071e-02, - 2DIAGNOSTIC, 42, -4.845033733386e-01, 1.517151602686e-05, 8.5637e-01, 1.2755e-02, - 2DIAGNOSTIC, 43, -4.845276659092e-01, 1.576003560496e-05, 8.6996e-01, 1.3590e-02, - 2DIAGNOSTIC, 44, -4.845052687165e-01, 1.474738504396e-05, 8.8143e-01, 1.1466e-02, - 2DIAGNOSTIC, 45, -4.845331061022e-01, 1.293414731894e-05, 8.9291e-01, 1.1475e-02, - 2DIAGNOSTIC, 46, -4.845338178471e-01, 1.032400104694e-05, 9.0297e-01, 1.0065e-02, - 2DIAGNOSTIC, 47, -4.845372598030e-01, 7.563154499270e-06, 9.1327e-01, 1.0300e-02, - 2DIAGNOSTIC, 48, -4.845513375540e-01, 5.114417982718e-06, 9.2481e-01, 1.1540e-02, - 2DIAGNOSTIC, 49, -4.845556626126e-01, 2.612132420719e-06, 9.3479e-01, 9.9781e-03, - 2DIAGNOSTIC, 50, -4.845738103423e-01, 2.474068478472e-06, 9.4618e-01, 1.1395e-02, - 2DIAGNOSTIC, 51, -4.846012876004e-01, 2.735236031341e-06, 9.5741e-01, 1.1222e-02, - 2DIAGNOSTIC, 52, -4.846255803403e-01, 3.137648603723e-06, 9.7001e-01, 1.2605e-02, - 2DIAGNOSTIC, 53, -4.846131598500e-01, 3.421803065208e-06, 9.7992e-01, 9.9092e-03, - 2DIAGNOSTIC, 54, -4.846230768674e-01, 3.290519904848e-06, 9.9122e-01, 1.1305e-02, - 2DIAGNOSTIC, 55, -4.846154897280e-01, 3.119272365702e-06, 1.0036e+00, 1.2405e-02, - 2DIAGNOSTIC, 56, -4.845948448071e-01, 2.497134279154e-06, 1.0169e+00, 1.3298e-02, - 2DIAGNOSTIC, 57, -4.846022659034e-01, 1.825319084024e-06, 1.0273e+00, 1.0411e-02, - 2DIAGNOSTIC, 58, -4.846054008718e-01, 1.230175279830e-06, 1.0377e+00, 1.0370e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.016572278737e-01, 1.797693134862e+308, 1.2454e+00, 2.0774e-01, - Elapsed time (stage 0): 1.2745e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.806174515464e-01, 1.797693134862e+308, 3.7806e-02, 3.7806e-02, - 2DIAGNOSTIC, 2, -9.841347753939e-01, 1.797693134862e+308, 3.9242e-02, 1.4360e-03, - 2DIAGNOSTIC, 3, -9.895544472682e-01, 1.797693134862e+308, 4.0626e-02, 1.3840e-03, - 2DIAGNOSTIC, 4, -9.955238024179e-01, 1.797693134862e+308, 4.1770e-02, 1.1439e-03, - 2DIAGNOSTIC, 5, -1.001057257953e+00, 1.797693134862e+308, 4.2916e-02, 1.1461e-03, - 2DIAGNOSTIC, 6, -1.008836417613e+00, 1.797693134862e+308, 4.4079e-02, 1.1630e-03, - 2DIAGNOSTIC, 7, -1.020080253079e+00, 1.797693134862e+308, 4.5657e-02, 1.5781e-03, - 2DIAGNOSTIC, 8, -1.027175042731e+00, 1.797693134862e+308, 4.6786e-02, 1.1292e-03, - 2DIAGNOSTIC, 9, -1.028870439718e+00, 1.797693134862e+308, 4.8355e-02, 1.5690e-03, - 2DIAGNOSTIC, 10, -1.028780978477e+00, 3.572773218366e-03, 4.9882e-02, 1.5271e-03, - 2DIAGNOSTIC, 11, -1.028149464137e+00, 2.968485399019e-03, 5.1475e-02, 1.5922e-03, - 2DIAGNOSTIC, 12, -1.027185520937e+00, 2.256743312226e-03, 5.2853e-02, 1.3781e-03, - 2DIAGNOSTIC, 13, -1.026383347748e+00, 1.550124431195e-03, 5.4198e-02, 1.3449e-03, - 2DIAGNOSTIC, 14, -1.027053287499e+00, 9.398224845432e-04, 5.5539e-02, 1.3411e-03, - 2DIAGNOSTIC, 15, -1.027903805297e+00, 4.454728500529e-04, 5.6883e-02, 1.3440e-03, - 2DIAGNOSTIC, 16, -1.029118507126e+00, 1.266970561310e-04, 5.8407e-02, 1.5240e-03, - 2DIAGNOSTIC, 17, -1.030281004939e+00, 3.585241229674e-05, 6.0179e-02, 1.7729e-03, - 2DIAGNOSTIC, 18, -1.030750538174e+00, 6.886311412859e-05, 6.1875e-02, 1.6959e-03, - 2DIAGNOSTIC, 19, -1.030968846101e+00, 1.201135652543e-04, 6.3449e-02, 1.5738e-03, - 2DIAGNOSTIC, 20, -1.031341102263e+00, 1.589863591317e-04, 6.5063e-02, 1.6139e-03, - 2DIAGNOSTIC, 21, -1.031946255380e+00, 1.791089587617e-04, 6.6409e-02, 1.3459e-03, - 2DIAGNOSTIC, 22, -1.032409881669e+00, 1.745857819087e-04, 6.7993e-02, 1.5841e-03, - 2DIAGNOSTIC, 23, -1.031252902214e+00, 1.305092131443e-04, 6.9817e-02, 1.8241e-03, - 2DIAGNOSTIC, 24, -1.030116782871e+00, 7.323192345022e-05, 7.1408e-02, 1.5910e-03, - 2DIAGNOSTIC, 25, -1.031560027471e+00, 3.942472326101e-05, 7.2935e-02, 1.5271e-03, - 2DIAGNOSTIC, 26, -1.032701654045e+00, 2.869726657172e-05, 7.4275e-02, 1.3399e-03, - 2DIAGNOSTIC, 27, -1.033347483551e+00, 3.436745389872e-05, 7.6131e-02, 1.8561e-03, - 2DIAGNOSTIC, 28, -1.034807283124e+00, 5.614847455941e-05, 7.7748e-02, 1.6170e-03, - 2DIAGNOSTIC, 29, -1.035411022536e+00, 7.916183032684e-05, 7.9966e-02, 2.2180e-03, - 2DIAGNOSTIC, 30, -1.031872096145e+00, 6.351212770420e-05, 8.1930e-02, 1.9639e-03, - 2DIAGNOSTIC, 31, -1.034636819785e+00, 7.369916409511e-05, 8.5072e-02, 3.1419e-03, - 2DIAGNOSTIC, 32, -1.035104812564e+00, 8.366661721406e-05, 8.7000e-02, 1.9281e-03, - 2DIAGNOSTIC, 33, -1.036754650807e+00, 8.933947416490e-05, 8.8980e-02, 1.9801e-03, - 2DIAGNOSTIC, 34, -1.038037987127e+00, 8.735648754928e-05, 9.0585e-02, 1.6050e-03, - 2DIAGNOSTIC, 35, -1.036311702542e+00, 7.533226869794e-05, 9.2188e-02, 1.6029e-03, - 2DIAGNOSTIC, 36, -1.036052968229e+00, 6.421566312028e-05, 9.3751e-02, 1.5631e-03, - 2DIAGNOSTIC, 37, -1.036627249593e+00, 5.600352287865e-05, 9.5306e-02, 1.5550e-03, - 2DIAGNOSTIC, 38, -1.036766535921e+00, 5.393362014870e-05, 9.6907e-02, 1.6010e-03, - 2DIAGNOSTIC, 39, -1.042149656978e+00, 9.028197894600e-05, 9.8276e-02, 1.3690e-03, - 2DIAGNOSTIC, 40, -1.067367201045e+00, 2.650271058692e-04, 9.9822e-02, 1.5459e-03, - 2DIAGNOSTIC, 41, -1.083925662903e+00, 5.316553475302e-04, 1.0116e-01, 1.3342e-03, - 2DIAGNOSTIC, 42, -1.103830207526e+00, 8.667800100029e-04, 1.0334e-01, 2.1799e-03, - 2DIAGNOSTIC, 43, -1.106315175270e+00, 1.128761728379e-03, 1.0471e-01, 1.3721e-03, - 2DIAGNOSTIC, 44, -1.111209280115e+00, 1.310734680708e-03, 1.0605e-01, 1.3461e-03, - 2DIAGNOSTIC, 45, -1.115241272207e+00, 1.371204805808e-03, 1.0782e-01, 1.7679e-03, - 2DIAGNOSTIC, 46, -1.116027221023e+00, 1.298715020265e-03, 1.0918e-01, 1.3590e-03, - 2DIAGNOSTIC, 47, -1.114469126038e+00, 1.100782375779e-03, 1.1054e-01, 1.3571e-03, - 2DIAGNOSTIC, 48, -1.115110952287e+00, 8.132169589706e-04, 1.1191e-01, 1.3750e-03, - 2DIAGNOSTIC, 49, -1.114933354115e+00, 4.876101023379e-04, 1.1354e-01, 1.6251e-03, - 2DIAGNOSTIC, 50, -1.114673413210e+00, 2.636468664886e-04, 1.1490e-01, 1.3599e-03, - 2DIAGNOSTIC, 51, -1.114734805926e+00, 1.100127799675e-04, 1.1696e-01, 2.0571e-03, - 2DIAGNOSTIC, 52, -1.114282650484e+00, 5.416686549882e-05, 1.1852e-01, 1.5681e-03, - 2DIAGNOSTIC, 53, -1.113979369375e+00, 6.224087588182e-06, 1.1989e-01, 1.3640e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.442370877551e-01, 1.797693134862e+308, 1.6021e-01, 4.0319e-02, - 2DIAGNOSTIC, 2, -7.446342731043e-01, 1.797693134862e+308, 1.6296e-01, 2.7490e-03, - 2DIAGNOSTIC, 3, -7.463827340681e-01, 1.797693134862e+308, 1.6569e-01, 2.7339e-03, - 2DIAGNOSTIC, 4, -7.488296261004e-01, 1.797693134862e+308, 1.6830e-01, 2.6121e-03, - 2DIAGNOSTIC, 5, -7.513196095666e-01, 1.797693134862e+308, 1.7052e-01, 2.2190e-03, - 2DIAGNOSTIC, 6, -7.535514897830e-01, 1.797693134862e+308, 1.7281e-01, 2.2860e-03, - 2DIAGNOSTIC, 7, -7.554843630053e-01, 1.797693134862e+308, 1.7537e-01, 2.5630e-03, - 2DIAGNOSTIC, 8, -7.573485488608e-01, 1.797693134862e+308, 1.7870e-01, 3.3259e-03, - 2DIAGNOSTIC, 9, -7.578758502579e-01, 1.797693134862e+308, 1.8126e-01, 2.5680e-03, - 2DIAGNOSTIC, 10, -7.582079468003e-01, 1.391128581580e-03, 1.8409e-01, 2.8238e-03, - 2DIAGNOSTIC, 11, -7.586493259671e-01, 1.164631655321e-03, 1.8697e-01, 2.8851e-03, - 2DIAGNOSTIC, 12, -7.592040415046e-01, 9.010826089112e-04, 1.8981e-01, 2.8350e-03, - 2DIAGNOSTIC, 13, -7.597574278927e-01, 6.626359285087e-04, 1.9326e-01, 3.4530e-03, - 2DIAGNOSTIC, 14, -7.609326682823e-01, 4.951982561795e-04, 1.9568e-01, 2.4211e-03, - 2DIAGNOSTIC, 15, -7.614801973377e-01, 3.806251451565e-04, 1.9904e-01, 3.3622e-03, - 2DIAGNOSTIC, 16, -7.619627974961e-01, 3.090144806561e-04, 2.0177e-01, 2.7301e-03, - 2DIAGNOSTIC, 17, -7.623143102725e-01, 2.672547689156e-04, 2.0477e-01, 2.9922e-03, - 2DIAGNOSTIC, 18, -7.624100544095e-01, 2.463003380195e-04, 2.0781e-01, 3.0441e-03, - 2DIAGNOSTIC, 19, -7.624034837773e-01, 2.150297837496e-04, 2.1038e-01, 2.5690e-03, - 2DIAGNOSTIC, 20, -7.623559904794e-01, 1.723408399422e-04, 2.1267e-01, 2.2919e-03, - 2DIAGNOSTIC, 21, -7.623777055150e-01, 1.261522782367e-04, 2.1526e-01, 2.5911e-03, - 2DIAGNOSTIC, 22, -7.624180759494e-01, 8.267830327312e-05, 2.1761e-01, 2.3501e-03, - 2DIAGNOSTIC, 23, -7.624338502021e-01, 4.431272431180e-05, 2.1995e-01, 2.3391e-03, - 2DIAGNOSTIC, 24, -7.625281286153e-01, 2.493065339464e-05, 2.2230e-01, 2.3441e-03, - 2DIAGNOSTIC, 25, -7.627164885492e-01, 1.579810214884e-05, 2.2496e-01, 2.6650e-03, - 2DIAGNOSTIC, 26, -7.628321669690e-01, 1.444385490207e-05, 2.2763e-01, 2.6681e-03, - 2DIAGNOSTIC, 27, -7.628745870337e-01, 1.736190267821e-05, 2.3028e-01, 2.6472e-03, - 2DIAGNOSTIC, 28, -7.629094427510e-01, 2.032583822673e-05, 2.3265e-01, 2.3780e-03, - 2DIAGNOSTIC, 29, -7.629217245977e-01, 2.136374163810e-05, 2.3501e-01, 2.3520e-03, - 2DIAGNOSTIC, 30, -7.630931647172e-01, 2.192593944126e-05, 2.3736e-01, 2.3520e-03, - 2DIAGNOSTIC, 31, -7.633182974586e-01, 2.338229398872e-05, 2.3999e-01, 2.6309e-03, - 2DIAGNOSTIC, 32, -7.636618170535e-01, 2.710226149281e-05, 2.4259e-01, 2.5990e-03, - 2DIAGNOSTIC, 33, -7.636770326139e-01, 2.843015447899e-05, 2.4646e-01, 3.8688e-03, - 2DIAGNOSTIC, 34, -7.637231131091e-01, 2.865217562040e-05, 2.4909e-01, 2.6350e-03, - 2DIAGNOSTIC, 35, -7.637304582000e-01, 2.830512103209e-05, 2.5143e-01, 2.3432e-03, - 2DIAGNOSTIC, 36, -7.636996523187e-01, 2.619577292982e-05, 2.5375e-01, 2.3201e-03, - 2DIAGNOSTIC, 37, -7.637221491602e-01, 2.241877032311e-05, 2.5608e-01, 2.3251e-03, - 2DIAGNOSTIC, 38, -7.637816338831e-01, 1.774516182262e-05, 2.5873e-01, 2.6541e-03, - 2DIAGNOSTIC, 39, -7.637408199762e-01, 1.143387117430e-05, 2.6139e-01, 2.6529e-03, - 2DIAGNOSTIC, 40, -7.639643912549e-01, 8.121323191473e-06, 2.6466e-01, 3.2711e-03, - 2DIAGNOSTIC, 41, -7.640952382233e-01, 7.388080008268e-06, 2.6698e-01, 2.3270e-03, - 2DIAGNOSTIC, 42, -7.642753874161e-01, 1.070384871752e-05, 2.6936e-01, 2.3758e-03, - 2DIAGNOSTIC, 43, -7.646950893625e-01, 1.667345697097e-05, 2.7262e-01, 3.2630e-03, - 2DIAGNOSTIC, 44, -7.649000811697e-01, 2.291010129803e-05, 2.7496e-01, 2.3370e-03, - 2DIAGNOSTIC, 45, -7.649793138206e-01, 2.746682182773e-05, 2.7823e-01, 3.2721e-03, - 2DIAGNOSTIC, 46, -7.650450253041e-01, 2.956999979070e-05, 2.8203e-01, 3.7980e-03, - 2DIAGNOSTIC, 47, -7.650466858630e-01, 2.900139528630e-05, 2.8441e-01, 2.3839e-03, - 2DIAGNOSTIC, 48, -7.650550972439e-01, 2.626915048547e-05, 2.8683e-01, 2.4130e-03, - 2DIAGNOSTIC, 49, -7.650678657319e-01, 2.093364985557e-05, 2.8958e-01, 2.7559e-03, - 2DIAGNOSTIC, 50, -7.650828667719e-01, 1.567122791261e-05, 2.9200e-01, 2.4159e-03, - 2DIAGNOSTIC, 51, -7.650587007632e-01, 9.968657403776e-06, 2.9440e-01, 2.4009e-03, - 2DIAGNOSTIC, 52, -7.650777687313e-01, 4.967440115758e-06, 2.9684e-01, 2.4390e-03, - 2DIAGNOSTIC, 53, -7.650539472421e-01, 2.494936434484e-06, 2.9931e-01, 2.4731e-03, - 2DIAGNOSTIC, 54, -7.650362875635e-01, 1.219686960631e-06, 3.0175e-01, 2.4359e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.727389112475e-01, 1.797693134862e+308, 3.6243e-01, 6.0677e-02, - 2DIAGNOSTIC, 2, -5.733013485382e-01, 1.797693134862e+308, 3.7569e-01, 1.3264e-02, - 2DIAGNOSTIC, 3, -5.740316541037e-01, 1.797693134862e+308, 3.8759e-01, 1.1903e-02, - 2DIAGNOSTIC, 4, -5.748188632458e-01, 1.797693134862e+308, 3.9976e-01, 1.2172e-02, - 2DIAGNOSTIC, 5, -5.756037512755e-01, 1.797693134862e+308, 4.1142e-01, 1.1652e-02, - 2DIAGNOSTIC, 6, -5.764554471224e-01, 1.797693134862e+308, 4.2329e-01, 1.1871e-02, - 2DIAGNOSTIC, 7, -5.772453572311e-01, 1.797693134862e+308, 4.3685e-01, 1.3562e-02, - 2DIAGNOSTIC, 8, -5.778243967781e-01, 1.797693134862e+308, 4.5476e-01, 1.7910e-02, - 2DIAGNOSTIC, 9, -5.779153277687e-01, 1.797693134862e+308, 4.7015e-01, 1.5395e-02, - 2DIAGNOSTIC, 10, -5.781587811970e-01, 6.639503444897e-04, 4.8332e-01, 1.3170e-02, - 2DIAGNOSTIC, 11, -5.785785741988e-01, 5.511583760285e-04, 4.9611e-01, 1.2783e-02, - 2DIAGNOSTIC, 12, -5.787897485143e-01, 4.388551103815e-04, 5.0812e-01, 1.2012e-02, - 2DIAGNOSTIC, 13, -5.789519216291e-01, 3.380125818317e-04, 5.2232e-01, 1.4200e-02, - 2DIAGNOSTIC, 14, -5.791603813680e-01, 2.562353082248e-04, 5.4090e-01, 1.8581e-02, - 2DIAGNOSTIC, 15, -5.791979272333e-01, 1.888445968901e-04, 5.5339e-01, 1.2487e-02, - 2DIAGNOSTIC, 16, -5.792660091112e-01, 1.405248354614e-04, 5.6545e-01, 1.2063e-02, - 2DIAGNOSTIC, 17, -5.793242015334e-01, 1.092815593590e-04, 5.7758e-01, 1.2125e-02, - 2DIAGNOSTIC, 18, -5.793625011641e-01, 8.855944603425e-05, 5.9109e-01, 1.3519e-02, - 2DIAGNOSTIC, 19, -5.793528097426e-01, 6.403773970338e-05, 6.0778e-01, 1.6689e-02, - 2DIAGNOSTIC, 20, -5.793511844761e-01, 4.196537619143e-05, 6.2732e-01, 1.9537e-02, - 2DIAGNOSTIC, 21, -5.793520360785e-01, 2.805956406288e-05, 6.4141e-01, 1.4087e-02, - 2DIAGNOSTIC, 22, -5.793499322778e-01, 1.755021051774e-05, 6.5701e-01, 1.5604e-02, - 2DIAGNOSTIC, 23, -5.793488302773e-01, 9.785121335197e-06, 6.7048e-01, 1.3472e-02, - 2DIAGNOSTIC, 24, -5.793477278876e-01, 6.146807972486e-06, 6.8244e-01, 1.1957e-02, - 2DIAGNOSTIC, 25, -5.793468783690e-01, 3.058473284544e-06, 6.9485e-01, 1.2405e-02, - 2DIAGNOSTIC, 26, -5.793464085805e-01, 1.293571667040e-06, 7.0807e-01, 1.3228e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.773841771124e-01, 1.797693134862e+308, 8.9994e-01, 1.9187e-01, - Elapsed time (stage 1): 9.2372e-01 - - -Total elapsed time: 2.1993e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:28:31 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 43 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 319 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 85.08% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 85.08% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[11132 16251 15890 6869 22781 5227 1871 3459 3445 2003 1500 197 - 229 520 0 0 0 181 290 206 0 0 286 0 - 0 0 0 214 0 0 0 0 0 0 0 0 - 0 0 0 0 0 0 0] -[129430 88489 89910 52481 68993 32243 42718 37771 20736 26615 - 11125 19180 15746 8420 13618 21563 4881 12750 8580 4153 - 3536 3843 14959 7658 6227 11702 2859 1203 1991 656 - 184 736 827 459 599 573 408 498 672 0 - 205 455 661] -[12085 0 229 0 0 0 0 0 7788 1169 9438 7141 - 0 0 0 226 0 7404 1537 30329 1203 0 0 0 - 0 9175 0 0 277 0 302 0 0 0 349 234 - 0 10073 0 322 821 8727 0] -[ 364 240 9361 8282 10712 1213 1649 4778 84972 12493 - 101979 803 4850 10945 556 5316 2646 68101 10301 866 - 23614 520 1109 1668 619 1760 1210 2337 16110 425 - 4153 1818 605 6826 12887 4350 4288 90410 666 20384 - 23708 89178 864] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:39:17 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:39:22 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:11 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:11 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:21 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:24 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC002 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:43:37 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:44:02 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:45:50 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:45:51 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:47:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:47:11 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x560bc3b11d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.2584, 111.949, -144.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x560bc3988730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f81af4fd010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x560bc3b15020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 44.028, -137.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x560bc3b1b0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f81abe3e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x560bc3b2b840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.2584, 111.949, -144.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x560bc3b17890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f81a716a010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x560bc3b2f3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 44.028, -137.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x560bc3b1e130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f81a3aab010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.150078067932e-01, 1.797693134862e+308, 2.4088e-01, 2.4088e-01, - 2DIAGNOSTIC, 2, -5.172565042030e-01, 1.797693134862e+308, 2.4233e-01, 1.4460e-03, - 2DIAGNOSTIC, 3, -5.194525519718e-01, 1.797693134862e+308, 2.4374e-01, 1.4160e-03, - 2DIAGNOSTIC, 4, -5.213206352038e-01, 1.797693134862e+308, 2.4511e-01, 1.3630e-03, - 2DIAGNOSTIC, 5, -5.241454755664e-01, 1.797693134862e+308, 2.4650e-01, 1.3981e-03, - 2DIAGNOSTIC, 6, -5.261692676625e-01, 1.797693134862e+308, 2.4807e-01, 1.5709e-03, - 2DIAGNOSTIC, 7, -5.358315070586e-01, 1.797693134862e+308, 2.4967e-01, 1.5960e-03, - 2DIAGNOSTIC, 8, -5.374944302351e-01, 1.797693134862e+308, 2.5136e-01, 1.6940e-03, - 2DIAGNOSTIC, 9, -5.382883167230e-01, 1.797693134862e+308, 2.5315e-01, 1.7910e-03, - 2DIAGNOSTIC, 10, -5.384888187855e-01, 3.324716436465e-03, 2.5496e-01, 1.8070e-03, - 2DIAGNOSTIC, 11, -5.382924641431e-01, 2.810320307256e-03, 2.5662e-01, 1.6601e-03, - 2DIAGNOSTIC, 12, -5.386675099651e-01, 2.242383465411e-03, 2.5830e-01, 1.6809e-03, - 2DIAGNOSTIC, 13, -5.394454495230e-01, 1.681189963355e-03, 2.6069e-01, 2.3909e-03, - 2DIAGNOSTIC, 14, -5.396193946811e-01, 1.129587711604e-03, 2.6234e-01, 1.6510e-03, - 2DIAGNOSTIC, 15, -5.398619280410e-01, 6.624903116010e-04, 2.6396e-01, 1.6189e-03, - 2DIAGNOSTIC, 16, -5.433818428309e-01, 3.713189291425e-04, 2.6562e-01, 1.6589e-03, - 2DIAGNOSTIC, 17, -5.482795998635e-01, 5.334400580359e-04, 2.6754e-01, 1.9140e-03, - 2DIAGNOSTIC, 18, -5.527319394097e-01, 8.046087267521e-04, 2.6922e-01, 1.6811e-03, - 2DIAGNOSTIC, 19, -5.755063380569e-01, 1.626679408633e-03, 2.7119e-01, 1.9760e-03, - 2DIAGNOSTIC, 20, -5.974484909216e-01, 2.775788154465e-03, 2.7334e-01, 2.1460e-03, - 2DIAGNOSTIC, 21, -6.007483404646e-01, 3.614671405910e-03, 2.7598e-01, 2.6369e-03, - 2DIAGNOSTIC, 22, -6.037153781093e-01, 4.121761930968e-03, 2.7786e-01, 1.8828e-03, - 2DIAGNOSTIC, 23, -6.033159270923e-01, 4.209470445448e-03, 2.8390e-01, 6.0420e-03, - 2DIAGNOSTIC, 24, -6.033159218103e-01, 3.894366186830e-03, 2.8551e-01, 1.6091e-03, - 2DIAGNOSTIC, 25, -6.033160256224e-01, 3.239557742092e-03, 2.8717e-01, 1.6551e-03, - 2DIAGNOSTIC, 26, -6.033162011608e-01, 2.408121782679e-03, 2.8878e-01, 1.6119e-03, - 2DIAGNOSTIC, 27, -6.033164979743e-01, 1.518740541713e-03, 2.9044e-01, 1.6601e-03, - 2DIAGNOSTIC, 28, -6.033169998272e-01, 6.302999773028e-04, 2.9204e-01, 1.6069e-03, - 2DIAGNOSTIC, 29, -6.033178482982e-01, 1.384846572751e-04, 2.9368e-01, 1.6379e-03, - 2DIAGNOSTIC, 30, -6.033192826087e-01, 3.873830000577e-05, 2.9532e-01, 1.6370e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.698368728522e-01, 1.797693134862e+308, 5.2446e-01, 2.2914e-01, - 2DIAGNOSTIC, 2, -4.688723095833e-01, 1.797693134862e+308, 5.2655e-01, 2.0881e-03, - 2DIAGNOSTIC, 3, -4.694818927056e-01, 1.797693134862e+308, 5.2841e-01, 1.8620e-03, - 2DIAGNOSTIC, 4, -4.720313142283e-01, 1.797693134862e+308, 5.3035e-01, 1.9469e-03, - 2DIAGNOSTIC, 5, -4.833082629028e-01, 1.797693134862e+308, 5.3293e-01, 2.5771e-03, - 2DIAGNOSTIC, 6, -5.166572343586e-01, 1.797693134862e+308, 5.3693e-01, 4.0028e-03, - 2DIAGNOSTIC, 7, -5.168416162203e-01, 1.797693134862e+308, 5.3881e-01, 1.8730e-03, - 2DIAGNOSTIC, 8, -5.169098690032e-01, 1.797693134862e+308, 5.4069e-01, 1.8849e-03, - 2DIAGNOSTIC, 9, -5.172833965134e-01, 1.797693134862e+308, 5.4260e-01, 1.9121e-03, - 2DIAGNOSTIC, 10, -5.177896093788e-01, 8.615922662468e-03, 5.4477e-01, 2.1632e-03, - 2DIAGNOSTIC, 11, -5.182345392534e-01, 7.231469229254e-03, 5.4691e-01, 2.1439e-03, - 2DIAGNOSTIC, 12, -5.183796748246e-01, 5.405100264343e-03, 5.4962e-01, 2.7089e-03, - 2DIAGNOSTIC, 13, -5.184151393824e-01, 3.438501367431e-03, 5.5175e-01, 2.1269e-03, - 2DIAGNOSTIC, 14, -5.183523176231e-01, 1.554920388265e-03, 5.5417e-01, 2.4209e-03, - 2DIAGNOSTIC, 15, -5.182813155809e-01, 1.750340216998e-04, 5.5626e-01, 2.0902e-03, - 2DIAGNOSTIC, 16, -5.181419315670e-01, 1.277694688036e-04, 5.5875e-01, 2.4941e-03, - 2DIAGNOSTIC, 17, -5.181759647508e-01, 8.218467821719e-05, 5.6116e-01, 2.4099e-03, - 2DIAGNOSTIC, 18, -5.181132613278e-01, 3.449953871472e-05, 5.6367e-01, 2.5120e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.798337703677e-01, 1.797693134862e+308, 8.1226e-01, 2.4858e-01, - 2DIAGNOSTIC, 2, -3.805112857148e-01, 1.797693134862e+308, 8.2435e-01, 1.2094e-02, - 2DIAGNOSTIC, 3, -3.815293987486e-01, 1.797693134862e+308, 8.3640e-01, 1.2044e-02, - 2DIAGNOSTIC, 4, -3.829871529989e-01, 1.797693134862e+308, 8.4832e-01, 1.1924e-02, - 2DIAGNOSTIC, 5, -3.850794511384e-01, 1.797693134862e+308, 8.6027e-01, 1.1952e-02, - 2DIAGNOSTIC, 6, -3.873426294174e-01, 1.797693134862e+308, 8.7263e-01, 1.2356e-02, - 2DIAGNOSTIC, 7, -3.930539077716e-01, 1.797693134862e+308, 8.8470e-01, 1.2070e-02, - 2DIAGNOSTIC, 8, -3.992051079890e-01, 1.797693134862e+308, 8.9851e-01, 1.3811e-02, - 2DIAGNOSTIC, 9, -4.039563260237e-01, 1.797693134862e+308, 9.1220e-01, 1.3690e-02, - 2DIAGNOSTIC, 10, -4.059900743505e-01, 4.676629613338e-03, 9.2850e-01, 1.6301e-02, - 2DIAGNOSTIC, 11, -4.105385770502e-01, 4.859975835250e-03, 9.4395e-01, 1.5450e-02, - 2DIAGNOSTIC, 12, -4.232619388066e-01, 5.361956369718e-03, 9.5808e-01, 1.4129e-02, - 2DIAGNOSTIC, 13, -5.028577275141e-01, 9.573556413022e-03, 9.7475e-01, 1.6670e-02, - 2DIAGNOSTIC, 14, -5.690339761820e-01, 1.526228510323e-02, 9.8726e-01, 1.2513e-02, - 2DIAGNOSTIC, 15, -5.819560448114e-01, 1.917569323080e-02, 1.0019e+00, 1.4617e-02, - 2DIAGNOSTIC, 16, -6.068165883093e-01, 2.180946957339e-02, 1.0203e+00, 1.8460e-02, - 2DIAGNOSTIC, 17, -6.177485723524e-01, 2.264617251567e-02, 1.0350e+00, 1.4636e-02, - 2DIAGNOSTIC, 18, -6.199841689733e-01, 2.154131539711e-02, 1.0477e+00, 1.2706e-02, - 2DIAGNOSTIC, 19, -6.216186182349e-01, 1.880824446250e-02, 1.0621e+00, 1.4375e-02, - 2DIAGNOSTIC, 20, -6.233668716504e-01, 1.485323088821e-02, 1.0806e+00, 1.8517e-02, - 2DIAGNOSTIC, 21, -6.238872205980e-01, 1.019847844309e-02, 1.0935e+00, 1.2934e-02, - 2DIAGNOSTIC, 22, -6.253686647609e-01, 5.481149748860e-03, 1.1054e+00, 1.1894e-02, - 2DIAGNOSTIC, 23, -6.264576445281e-01, 2.761277451356e-03, 1.1174e+00, 1.2003e-02, - 2DIAGNOSTIC, 24, -6.275426294336e-01, 1.667196624293e-03, 1.1382e+00, 2.0759e-02, - 2DIAGNOSTIC, 25, -6.281825968534e-01, 8.199275160646e-04, 1.1519e+00, 1.3751e-02, - 2DIAGNOSTIC, 26, -6.282258941240e-01, 5.058054260224e-04, 1.1647e+00, 1.2806e-02, - 2DIAGNOSTIC, 27, -6.284748036072e-01, 4.017806796674e-04, 1.1786e+00, 1.3895e-02, - 2DIAGNOSTIC, 28, -6.287133814374e-01, 3.170152729287e-04, 1.1913e+00, 1.2683e-02, - 2DIAGNOSTIC, 29, -6.298214724389e-01, 2.603365959223e-04, 1.2042e+00, 1.2888e-02, - 2DIAGNOSTIC, 30, -6.323387932955e-01, 2.604367693243e-04, 1.2217e+00, 1.7528e-02, - 2DIAGNOSTIC, 31, -6.330166574188e-01, 2.557037625878e-04, 1.2507e+00, 2.8981e-02, - 2DIAGNOSTIC, 32, -6.330475921984e-01, 2.528758234444e-04, 1.2652e+00, 1.4547e-02, - 2DIAGNOSTIC, 33, -6.330542105211e-01, 2.444163009534e-04, 1.2800e+00, 1.4745e-02, - 2DIAGNOSTIC, 34, -6.330513635658e-01, 2.298962917020e-04, 1.2927e+00, 1.2759e-02, - 2DIAGNOSTIC, 35, -6.331183882427e-01, 2.046922088695e-04, 1.3071e+00, 1.4386e-02, - 2DIAGNOSTIC, 36, -6.330933548928e-01, 1.619814221405e-04, 1.3214e+00, 1.4235e-02, - 2DIAGNOSTIC, 37, -6.330936014415e-01, 1.108546487103e-04, 1.3357e+00, 1.4300e-02, - 2DIAGNOSTIC, 38, -6.331139859337e-01, 5.609235684924e-05, 1.3517e+00, 1.6023e-02, - 2DIAGNOSTIC, 39, -6.331226601426e-01, 1.326637676162e-05, 1.3637e+00, 1.2038e-02, - 2DIAGNOSTIC, 40, -6.330837433271e-01, 3.359499714275e-06, 1.3799e+00, 1.6151e-02, - 2DIAGNOSTIC, 41, -6.331086167759e-01, 2.573689737141e-06, 1.3949e+00, 1.4981e-02, - 2DIAGNOSTIC, 42, -6.330780076265e-01, 1.671999373228e-06, 1.4073e+00, 1.2416e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.360804986825e-01, 1.797693134862e+308, 1.8344e+00, 4.2708e-01, - 2DIAGNOSTIC, 2, -5.362611715853e-01, 1.797693134862e+308, 1.9219e+00, 8.7538e-02, - 2DIAGNOSTIC, 3, -5.365073272285e-01, 1.797693134862e+308, 2.0087e+00, 8.6763e-02, - 2DIAGNOSTIC, 4, -5.367520481575e-01, 1.797693134862e+308, 2.1083e+00, 9.9659e-02, - 2DIAGNOSTIC, 5, -5.371873472008e-01, 1.797693134862e+308, 2.2215e+00, 1.1322e-01, - 2DIAGNOSTIC, 6, -5.375190255024e-01, 1.797693134862e+308, 2.3077e+00, 8.6179e-02, - 2DIAGNOSTIC, 7, -5.375513702062e-01, 1.797693134862e+308, 2.3931e+00, 8.5379e-02, - 2DIAGNOSTIC, 8, -5.375933127870e-01, 1.797693134862e+308, 2.4935e+00, 1.0044e-01, - 2DIAGNOSTIC, 9, -5.376780317786e-01, 1.797693134862e+308, 2.5936e+00, 1.0009e-01, - 2DIAGNOSTIC, 10, -5.378952536304e-01, 2.276996347695e-04, 2.6974e+00, 1.0379e-01, - 2DIAGNOSTIC, 11, -5.378987383165e-01, 1.806204792134e-04, 2.7831e+00, 8.5707e-02, - 2DIAGNOSTIC, 12, -5.379425402522e-01, 1.355765053323e-04, 2.8694e+00, 8.6243e-02, - 2DIAGNOSTIC, 13, -5.379683691498e-01, 9.673305091275e-05, 2.9669e+00, 9.7567e-02, - 2DIAGNOSTIC, 14, -5.381110319958e-01, 6.911872576465e-05, 3.0918e+00, 1.2489e-01, - 2DIAGNOSTIC, 15, -5.381782695940e-01, 5.626068636262e-05, 3.1889e+00, 9.7094e-02, - 2DIAGNOSTIC, 16, -5.382016556043e-01, 5.178734426947e-05, 3.2738e+00, 8.4867e-02, - 2DIAGNOSTIC, 17, -5.382186692001e-01, 4.494696233748e-05, 3.3555e+00, 8.1772e-02, - 2DIAGNOSTIC, 18, -5.382373747970e-01, 3.667004250223e-05, 3.4537e+00, 9.8169e-02, - 2DIAGNOSTIC, 19, -5.382557603487e-01, 2.867281179236e-05, 3.5961e+00, 1.4237e-01, - 2DIAGNOSTIC, 20, -5.382564286236e-01, 2.470252309052e-05, 3.6837e+00, 8.7565e-02, - 2DIAGNOSTIC, 21, -5.382551844972e-01, 1.904408471298e-05, 3.7804e+00, 9.6718e-02, - 2DIAGNOSTIC, 22, -5.382622154008e-01, 1.353293068612e-05, 3.8766e+00, 9.6278e-02, - 2DIAGNOSTIC, 23, -5.382614761276e-01, 7.865751791791e-06, 3.9728e+00, 9.6155e-02, - 2DIAGNOSTIC, 24, -5.382758009580e-01, 5.484365669259e-06, 4.1353e+00, 1.6248e-01, - 2DIAGNOSTIC, 25, -5.382728751533e-01, 4.251478728054e-06, 4.2300e+00, 9.4738e-02, - 2DIAGNOSTIC, 26, -5.382747821439e-01, 3.353145346018e-06, 4.3119e+00, 8.1917e-02, - 2DIAGNOSTIC, 27, -5.382714240949e-01, 2.582911493666e-06, 4.3935e+00, 8.1528e-02, - 2DIAGNOSTIC, 28, -5.382717480791e-01, 2.084388483280e-06, 4.4912e+00, 9.7751e-02, - 2DIAGNOSTIC, 29, -5.382684857025e-01, 1.803372360137e-06, 4.5877e+00, 9.6458e-02, - 2DIAGNOSTIC, 30, -5.382669087272e-01, 1.460840217488e-06, 4.6860e+00, 9.8350e-02, - 2DIAGNOSTIC, 31, -5.382635707430e-01, 1.024928469068e-06, 4.7667e+00, 8.0705e-02, - Elapsed time (stage 0): 4.9066e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.765816571809e-01, 1.797693134862e+308, 2.0475e-01, 2.0475e-01, - 2DIAGNOSTIC, 2, -8.789550458481e-01, 1.797693134862e+308, 2.0604e-01, 1.2879e-03, - 2DIAGNOSTIC, 3, -8.807921300826e-01, 1.797693134862e+308, 2.0732e-01, 1.2782e-03, - 2DIAGNOSTIC, 4, -8.845576962322e-01, 1.797693134862e+308, 2.0853e-01, 1.2119e-03, - 2DIAGNOSTIC, 5, -8.900933300429e-01, 1.797693134862e+308, 2.0998e-01, 1.4491e-03, - 2DIAGNOSTIC, 6, -8.958109784416e-01, 1.797693134862e+308, 2.1126e-01, 1.2798e-03, - 2DIAGNOSTIC, 7, -9.076031736693e-01, 1.797693134862e+308, 2.1249e-01, 1.2321e-03, - 2DIAGNOSTIC, 8, -9.186825343534e-01, 1.797693134862e+308, 2.1383e-01, 1.3449e-03, - 2DIAGNOSTIC, 9, -9.451633377823e-01, 1.797693134862e+308, 2.1514e-01, 1.3061e-03, - 2DIAGNOSTIC, 10, -9.555133911661e-01, 5.511226582459e-03, 2.1702e-01, 1.8849e-03, - 2DIAGNOSTIC, 11, -9.621274850466e-01, 5.868516749613e-03, 2.1851e-01, 1.4811e-03, - 2DIAGNOSTIC, 12, -9.713899507960e-01, 5.941341358267e-03, 2.1998e-01, 1.4729e-03, - 2DIAGNOSTIC, 13, -9.740197079733e-01, 5.566771611154e-03, 2.2166e-01, 1.6770e-03, - 2DIAGNOSTIC, 14, -9.734695927549e-01, 4.810271937386e-03, 2.2309e-01, 1.4379e-03, - 2DIAGNOSTIC, 15, -9.741252875103e-01, 3.850212579365e-03, 2.2436e-01, 1.2660e-03, - 2DIAGNOSTIC, 16, -9.742952641912e-01, 2.777963464911e-03, 2.2600e-01, 1.6429e-03, - 2DIAGNOSTIC, 17, -9.745635605048e-01, 1.798744585969e-03, 2.2738e-01, 1.3790e-03, - 2DIAGNOSTIC, 18, -9.747580470689e-01, 9.479345405200e-04, 2.2891e-01, 1.5299e-03, - 2DIAGNOSTIC, 19, -9.737515069444e-01, 5.088725500032e-04, 2.3038e-01, 1.4660e-03, - 2DIAGNOSTIC, 20, -9.763089368347e-01, 2.637282129033e-04, 2.3240e-01, 2.0180e-03, - 2DIAGNOSTIC, 21, -9.750806658815e-01, 9.125061442562e-05, 2.3393e-01, 1.5342e-03, - 2DIAGNOSTIC, 22, -9.755066578330e-01, 5.921173784629e-05, 2.3549e-01, 1.5600e-03, - 2DIAGNOSTIC, 23, -9.769229390845e-01, 7.821030617138e-05, 2.3705e-01, 1.5571e-03, - 2DIAGNOSTIC, 24, -9.773623279625e-01, 8.622761449564e-05, 2.3844e-01, 1.3938e-03, - 2DIAGNOSTIC, 25, -9.783913587636e-01, 1.056087967690e-04, 2.4009e-01, 1.6510e-03, - 2DIAGNOSTIC, 26, -9.791828903286e-01, 1.245930500145e-04, 2.4152e-01, 1.4291e-03, - 2DIAGNOSTIC, 27, -9.787398786816e-01, 1.287306911445e-04, 2.4363e-01, 2.1110e-03, - 2DIAGNOSTIC, 28, -9.787410581050e-01, 1.231926285910e-04, 2.4564e-01, 2.0120e-03, - 2DIAGNOSTIC, 29, -9.787470852778e-01, 9.528781136798e-05, 2.4767e-01, 2.0270e-03, - 2DIAGNOSTIC, 30, -9.780217846177e-01, 7.898949443015e-05, 2.4948e-01, 1.8079e-03, - 2DIAGNOSTIC, 31, -9.772390856477e-01, 3.720914054298e-05, 2.5165e-01, 2.1670e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.160183125511e-01, 1.797693134862e+308, 4.5487e-01, 2.0322e-01, - 2DIAGNOSTIC, 2, -8.162079417741e-01, 1.797693134862e+308, 4.5679e-01, 1.9200e-03, - 2DIAGNOSTIC, 3, -8.171513819343e-01, 1.797693134862e+308, 4.5862e-01, 1.8330e-03, - 2DIAGNOSTIC, 4, -8.183157784090e-01, 1.797693134862e+308, 4.6157e-01, 2.9509e-03, - 2DIAGNOSTIC, 5, -8.184756092544e-01, 1.797693134862e+308, 4.6447e-01, 2.8958e-03, - 2DIAGNOSTIC, 6, -8.182355359212e-01, 1.797693134862e+308, 4.6710e-01, 2.6300e-03, - 2DIAGNOSTIC, 7, -8.181038877128e-01, 1.797693134862e+308, 4.6993e-01, 2.8269e-03, - 2DIAGNOSTIC, 8, -8.179558604190e-01, 1.797693134862e+308, 4.7235e-01, 2.4240e-03, - 2DIAGNOSTIC, 9, -8.178364419640e-01, 1.797693134862e+308, 4.7471e-01, 2.3580e-03, - 2DIAGNOSTIC, 10, -8.179543646547e-01, 1.347501469783e-04, 4.7914e-01, 4.4310e-03, - 2DIAGNOSTIC, 11, -8.180541823414e-01, 6.440630826711e-05, 4.8184e-01, 2.7061e-03, - 2DIAGNOSTIC, 12, -8.179347039170e-01, 2.015459051444e-06, 4.8435e-01, 2.5098e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.973640047341e-01, 1.797693134862e+308, 7.1882e-01, 2.3447e-01, - 2DIAGNOSTIC, 2, -6.986208405365e-01, 1.797693134862e+308, 7.3152e-01, 1.2697e-02, - 2DIAGNOSTIC, 3, -7.005795636623e-01, 1.797693134862e+308, 7.4422e-01, 1.2704e-02, - 2DIAGNOSTIC, 4, -7.030368318187e-01, 1.797693134862e+308, 7.5681e-01, 1.2587e-02, - 2DIAGNOSTIC, 5, -7.071707245050e-01, 1.797693134862e+308, 7.6946e-01, 1.2645e-02, - 2DIAGNOSTIC, 6, -7.106086125378e-01, 1.797693134862e+308, 7.8409e-01, 1.4637e-02, - 2DIAGNOSTIC, 7, -7.122346848968e-01, 1.797693134862e+308, 8.0073e-01, 1.6633e-02, - 2DIAGNOSTIC, 8, -7.127740754755e-01, 1.797693134862e+308, 8.1540e-01, 1.4672e-02, - 2DIAGNOSTIC, 9, -7.129548576155e-01, 1.797693134862e+308, 8.3027e-01, 1.4876e-02, - 2DIAGNOSTIC, 10, -7.139599709838e-01, 1.713523868144e-03, 8.4523e-01, 1.4955e-02, - 2DIAGNOSTIC, 11, -7.143637198956e-01, 1.364138373548e-03, 8.6456e-01, 1.9332e-02, - 2DIAGNOSTIC, 12, -7.144640866457e-01, 9.969834323203e-04, 8.8013e-01, 1.5570e-02, - 2DIAGNOSTIC, 13, -7.145376042488e-01, 6.609201915707e-04, 8.9592e-01, 1.5787e-02, - 2DIAGNOSTIC, 14, -7.145976742406e-01, 3.839925664535e-04, 9.1121e-01, 1.5293e-02, - 2DIAGNOSTIC, 15, -7.146000798979e-01, 2.175295743234e-04, 9.2546e-01, 1.4248e-02, - 2DIAGNOSTIC, 16, -7.145628919842e-01, 1.362215613801e-04, 9.4081e-01, 1.5352e-02, - 2DIAGNOSTIC, 17, -7.146302954770e-01, 9.210020021508e-05, 9.5424e-01, 1.3424e-02, - 2DIAGNOSTIC, 18, -7.147966795592e-01, 6.047482630171e-05, 9.7016e-01, 1.5924e-02, - 2DIAGNOSTIC, 19, -7.149442478471e-01, 3.307956240692e-05, 9.8623e-01, 1.6066e-02, - 2DIAGNOSTIC, 20, -7.150934734495e-01, 2.839301379341e-05, 9.9991e-01, 1.3686e-02, - 2DIAGNOSTIC, 21, -7.153606578680e-01, 3.442232853997e-05, 1.0196e+00, 1.9669e-02, - 2DIAGNOSTIC, 22, -7.156089220180e-01, 4.304484506718e-05, 1.0475e+00, 2.7931e-02, - 2DIAGNOSTIC, 23, -7.156490397769e-01, 4.886861197272e-05, 1.0608e+00, 1.3276e-02, - 2DIAGNOSTIC, 24, -7.156524317768e-01, 5.086261086810e-05, 1.0747e+00, 1.3939e-02, - 2DIAGNOSTIC, 25, -7.156380150964e-01, 4.793353130146e-05, 1.0907e+00, 1.6018e-02, - 2DIAGNOSTIC, 26, -7.156254074113e-01, 4.004223831548e-05, 1.1042e+00, 1.3452e-02, - 2DIAGNOSTIC, 27, -7.156367062651e-01, 3.016310604779e-05, 1.1211e+00, 1.6885e-02, - 2DIAGNOSTIC, 28, -7.156260662234e-01, 2.047419410307e-05, 1.1360e+00, 1.4950e-02, - 2DIAGNOSTIC, 29, -7.155990476644e-01, 1.133205580320e-05, 1.1494e+00, 1.3395e-02, - 2DIAGNOSTIC, 30, -7.155996720856e-01, 3.789062570120e-06, 1.1646e+00, 1.5198e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.908522926258e-01, 1.797693134862e+308, 1.5966e+00, 4.3202e-01, - 2DIAGNOSTIC, 2, -5.914733783248e-01, 1.797693134862e+308, 1.6930e+00, 9.6373e-02, - 2DIAGNOSTIC, 3, -5.920820907839e-01, 1.797693134862e+308, 1.7875e+00, 9.4473e-02, - 2DIAGNOSTIC, 4, -5.925458882474e-01, 1.797693134862e+308, 1.8817e+00, 9.4252e-02, - 2DIAGNOSTIC, 5, -5.927338296399e-01, 1.797693134862e+308, 2.0070e+00, 1.2529e-01, - 2DIAGNOSTIC, 6, -5.927883651767e-01, 1.797693134862e+308, 2.1028e+00, 9.5797e-02, - 2DIAGNOSTIC, 7, -5.928723111694e-01, 1.797693134862e+308, 2.2100e+00, 1.0717e-01, - 2DIAGNOSTIC, 8, -5.928987886305e-01, 1.797693134862e+308, 2.3015e+00, 9.1466e-02, - 2DIAGNOSTIC, 9, -5.929192881553e-01, 1.797693134862e+308, 2.4109e+00, 1.0943e-01, - 2DIAGNOSTIC, 10, -5.929345612328e-01, 1.989318560536e-04, 2.5496e+00, 1.3875e-01, - 2DIAGNOSTIC, 11, -5.929358630091e-01, 1.145461123672e-04, 2.6919e+00, 1.4223e-01, - 2DIAGNOSTIC, 12, -5.929349311120e-01, 5.861297553594e-05, 2.8171e+00, 1.2527e-01, - 2DIAGNOSTIC, 13, -5.929337106086e-01, 2.825814963774e-05, 2.9286e+00, 1.1146e-01, - 2DIAGNOSTIC, 14, -5.929321565400e-01, 1.560360665133e-05, 3.0403e+00, 1.1169e-01, - 2DIAGNOSTIC, 15, -5.929317236714e-01, 9.401612700619e-06, 3.1522e+00, 1.1192e-01, - 2DIAGNOSTIC, 16, -5.929291429808e-01, 4.809452771384e-06, 3.2640e+00, 1.1178e-01, - 2DIAGNOSTIC, 17, -5.929300055648e-01, 2.884923700881e-06, 3.3695e+00, 1.0552e-01, - 2DIAGNOSTIC, 18, -5.929266410226e-01, 1.685498667449e-06, 3.4628e+00, 9.3303e-02, - 2DIAGNOSTIC, 19, -5.929256207843e-01, 1.103093540053e-06, 3.5537e+00, 9.0904e-02, - 2DIAGNOSTIC, 20, -5.929272122948e-01, 1.035428040565e-06, 3.6597e+00, 1.0597e-01, - 2DIAGNOSTIC, 21, -5.929271459543e-01, 1.052272516393e-06, 3.7522e+00, 9.2526e-02, - 2DIAGNOSTIC, 22, -5.929254688019e-01, 1.054426108898e-06, 3.8436e+00, 9.1429e-02, - 2DIAGNOSTIC, 23, -5.929272978650e-01, 1.108420679817e-06, 3.9513e+00, 1.0765e-01, - 2DIAGNOSTIC, 24, -5.929267966659e-01, 1.141556377586e-06, 4.0578e+00, 1.0650e-01, - 2DIAGNOSTIC, 25, -5.929307050449e-01, 1.256309678517e-06, 4.1770e+00, 1.1921e-01, - 2DIAGNOSTIC, 26, -5.929263746266e-01, 1.233228826926e-06, 4.2834e+00, 1.0644e-01, - 2DIAGNOSTIC, 27, -5.929262527858e-01, 1.229361764936e-06, 4.4046e+00, 1.2119e-01, - 2DIAGNOSTIC, 28, -5.929230632849e-01, 1.109425213294e-06, 4.4956e+00, 9.1017e-02, - Elapsed time (stage 1): 4.6308e+00 - - -Total elapsed time: 9.5408e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:47:24 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 03:47:24 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55cacba7c4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 44.028, -137.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cacba81fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f511293e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55cacba7d850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 44.028, -137.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cacba7af30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f510f27f010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55cacba94b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 44.028, -137.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cacba81550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f510bbc0010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55cacba99d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 44.028, -137.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cacba97c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5108501010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55cacba9bf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 44.028, -137.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cacba9a3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5104e42010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55cacba9c540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 44.028, -137.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cacba9c4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5101783010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.446620025568e-01, 1.797693134862e+308, 2.1604e-01, 2.1604e-01, - 2DIAGNOSTIC, 2, -6.471582639961e-01, 1.797693134862e+308, 2.1805e-01, 2.0161e-03, - 2DIAGNOSTIC, 3, -6.507273946887e-01, 1.797693134862e+308, 2.2004e-01, 1.9920e-03, - 2DIAGNOSTIC, 4, -6.550832620790e-01, 1.797693134862e+308, 2.2201e-01, 1.9710e-03, - 2DIAGNOSTIC, 5, -6.598302129985e-01, 1.797693134862e+308, 2.2436e-01, 2.3501e-03, - 2DIAGNOSTIC, 6, -6.622419417351e-01, 1.797693134862e+308, 2.2643e-01, 2.0628e-03, - 2DIAGNOSTIC, 7, -6.631366985451e-01, 1.797693134862e+308, 2.2873e-01, 2.3029e-03, - 2DIAGNOSTIC, 8, -6.629542944335e-01, 1.797693134862e+308, 2.3073e-01, 2.0039e-03, - 2DIAGNOSTIC, 9, -6.633489640730e-01, 1.797693134862e+308, 2.3294e-01, 2.2080e-03, - 2DIAGNOSTIC, 10, -6.636105644956e-01, 1.985150765093e-03, 2.3594e-01, 2.9991e-03, - 2DIAGNOSTIC, 11, -6.636301899808e-01, 1.382899870640e-03, 2.3807e-01, 2.1250e-03, - 2DIAGNOSTIC, 12, -6.636445341362e-01, 8.489797524488e-04, 2.4074e-01, 2.6700e-03, - 2DIAGNOSTIC, 13, -6.636482456370e-01, 4.391565475817e-04, 2.4276e-01, 2.0251e-03, - 2DIAGNOSTIC, 14, -6.636661265835e-01, 1.803059031035e-04, 2.4662e-01, 3.8559e-03, - 2DIAGNOSTIC, 15, -6.636661579621e-01, 7.440707670818e-05, 2.5338e-01, 6.7599e-03, - 2DIAGNOSTIC, 16, -6.636661579616e-01, 3.953635272358e-05, 2.5858e-01, 5.2052e-03, - 2DIAGNOSTIC, 17, -6.636661579616e-01, 2.836548180998e-05, 2.6094e-01, 2.3620e-03, - 2DIAGNOSTIC, 18, -6.636661579616e-01, 1.144166361537e-05, 2.6321e-01, 2.2700e-03, - 2DIAGNOSTIC, 19, -6.636661579616e-01, 4.187432482872e-06, 2.6578e-01, 2.5611e-03, - 2DIAGNOSTIC, 20, -6.636661579616e-01, 3.049468610163e-06, 2.6801e-01, 2.2309e-03, - 2DIAGNOSTIC, 21, -6.636661579616e-01, 2.285737437872e-06, 2.7084e-01, 2.8379e-03, - 2DIAGNOSTIC, 22, -6.636661579616e-01, 1.803014508889e-06, 2.7359e-01, 2.7418e-03, - 2DIAGNOSTIC, 23, -6.636661579616e-01, 1.389448513633e-06, 2.7674e-01, 3.1500e-03, - 2DIAGNOSTIC, 24, -6.636661579616e-01, 1.330759171643e-06, 2.7916e-01, 2.4259e-03, - 2DIAGNOSTIC, 25, -6.636661579616e-01, 1.277322742591e-06, 2.8160e-01, 2.4390e-03, - 2DIAGNOSTIC, 26, -6.636661579616e-01, 1.228012098731e-06, 2.8405e-01, 2.4459e-03, - 2DIAGNOSTIC, 27, -6.636661579616e-01, 1.182367184417e-06, 2.8647e-01, 2.4250e-03, - 2DIAGNOSTIC, 28, -6.636661579616e-01, 1.139993885894e-06, 2.8913e-01, 2.6581e-03, - 2DIAGNOSTIC, 29, -6.636661579616e-01, 1.100552631278e-06, 2.9149e-01, 2.3601e-03, - 2DIAGNOSTIC, 30, -6.636661579616e-01, 1.063749270842e-06, 2.9386e-01, 2.3701e-03, - 2DIAGNOSTIC, 31, -6.636661579616e-01, 1.029327728136e-06, 2.9674e-01, 2.8801e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.599007276300e-01, 1.797693134862e+308, 5.3918e-01, 2.4244e-01, - 2DIAGNOSTIC, 2, -5.611023407871e-01, 1.797693134862e+308, 5.5302e-01, 1.3841e-02, - 2DIAGNOSTIC, 3, -5.620284504021e-01, 1.797693134862e+308, 5.6660e-01, 1.3574e-02, - 2DIAGNOSTIC, 4, -5.629664806840e-01, 1.797693134862e+308, 5.7978e-01, 1.3186e-02, - 2DIAGNOSTIC, 5, -5.634405609429e-01, 1.797693134862e+308, 5.9583e-01, 1.6046e-02, - 2DIAGNOSTIC, 6, -5.635417753926e-01, 1.797693134862e+308, 6.1125e-01, 1.5425e-02, - 2DIAGNOSTIC, 7, -5.636037954226e-01, 1.797693134862e+308, 6.3069e-01, 1.9437e-02, - 2DIAGNOSTIC, 8, -5.636408011939e-01, 1.797693134862e+308, 6.4649e-01, 1.5799e-02, - 2DIAGNOSTIC, 9, -5.636708576614e-01, 1.797693134862e+308, 6.6675e-01, 2.0258e-02, - 2DIAGNOSTIC, 10, -5.636972001680e-01, 3.812810978408e-04, 6.8067e-01, 1.3918e-02, - 2DIAGNOSTIC, 11, -5.636870674272e-01, 2.159304044877e-04, 6.9636e-01, 1.5694e-02, - 2DIAGNOSTIC, 12, -5.636723795182e-01, 1.086801748883e-04, 7.1254e-01, 1.6176e-02, - 2DIAGNOSTIC, 13, -5.636992683444e-01, 4.461867348869e-05, 7.2757e-01, 1.5035e-02, - 2DIAGNOSTIC, 14, -5.636750726018e-01, 1.836313975047e-05, 7.4346e-01, 1.5887e-02, - 2DIAGNOSTIC, 15, -5.636850684289e-01, 1.038919818533e-05, 7.5934e-01, 1.5884e-02, - 2DIAGNOSTIC, 16, -5.636715180041e-01, 5.393490749309e-06, 7.7593e-01, 1.6591e-02, - 2DIAGNOSTIC, 17, -5.636837329896e-01, 2.877469702151e-06, 7.9207e-01, 1.6138e-02, - 2DIAGNOSTIC, 18, -5.636686627188e-01, 1.125185431598e-06, 8.0655e-01, 1.4479e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.703228305555e-01, 1.797693134862e+308, 1.2020e+00, 3.9541e-01, - 2DIAGNOSTIC, 2, -4.710778996016e-01, 1.797693134862e+308, 1.3084e+00, 1.0639e-01, - 2DIAGNOSTIC, 3, -4.716358520802e-01, 1.797693134862e+308, 1.4078e+00, 9.9493e-02, - 2DIAGNOSTIC, 4, -4.719374685880e-01, 1.797693134862e+308, 1.5181e+00, 1.1029e-01, - 2DIAGNOSTIC, 5, -4.719707402629e-01, 1.797693134862e+308, 1.6193e+00, 1.0119e-01, - 2DIAGNOSTIC, 6, -4.719973694174e-01, 1.797693134862e+308, 1.7171e+00, 9.7796e-02, - 2DIAGNOSTIC, 7, -4.720420342296e-01, 1.797693134862e+308, 1.8137e+00, 9.6623e-02, - 2DIAGNOSTIC, 8, -4.725999899399e-01, 1.797693134862e+308, 1.9444e+00, 1.3062e-01, - 2DIAGNOSTIC, 9, -4.727181465280e-01, 1.797693134862e+308, 2.2157e+00, 2.7133e-01, - 2DIAGNOSTIC, 10, -4.727194867697e-01, 2.778008567629e-04, 2.3234e+00, 1.0770e-01, - 2DIAGNOSTIC, 11, -4.727170718973e-01, 1.909387162568e-04, 2.4437e+00, 1.2027e-01, - 2DIAGNOSTIC, 12, -4.727163750981e-01, 1.389255505586e-04, 2.5371e+00, 9.3390e-02, - 2DIAGNOSTIC, 13, -4.727158047884e-01, 1.076090993560e-04, 2.6551e+00, 1.1804e-01, - 2DIAGNOSTIC, 14, -4.727147519439e-01, 8.397163663758e-05, 2.7595e+00, 1.0436e-01, - 2DIAGNOSTIC, 15, -4.727136139980e-01, 5.765936152742e-05, 2.8531e+00, 9.3597e-02, - 2DIAGNOSTIC, 16, -4.727126372142e-01, 3.079145384778e-05, 2.9456e+00, 9.2521e-02, - 2DIAGNOSTIC, 17, -4.727133026250e-01, 5.526541329959e-06, 3.0527e+00, 1.0712e-01, - 2DIAGNOSTIC, 18, -4.727142451886e-01, 1.304834015371e-06, 3.1460e+00, 9.3279e-02, - 2DIAGNOSTIC, 19, -4.727130765795e-01, 1.273371026463e-06, 3.2412e+00, 9.5259e-02, - 2DIAGNOSTIC, 20, -4.727156832499e-01, 1.405223502775e-06, 3.3479e+00, 1.0671e-01, - 2DIAGNOSTIC, 21, -4.727154705342e-01, 1.464912526492e-06, 3.4573e+00, 1.0937e-01, - 2DIAGNOSTIC, 22, -4.727115485154e-01, 1.397414117324e-06, 3.5661e+00, 1.0882e-01, - 2DIAGNOSTIC, 23, -4.727142328704e-01, 1.399358400919e-06, 3.6615e+00, 9.5377e-02, - 2DIAGNOSTIC, 24, -4.727180799685e-01, 1.467511315419e-06, 3.8080e+00, 1.4651e-01, - 2DIAGNOSTIC, 25, -4.727193785309e-01, 1.517715043954e-06, 3.9148e+00, 1.0682e-01, - 2DIAGNOSTIC, 26, -4.727174625792e-01, 1.474934269573e-06, 4.0223e+00, 1.0751e-01, - 2DIAGNOSTIC, 27, -4.727172524579e-01, 1.426123377307e-06, 4.1443e+00, 1.2200e-01, - 2DIAGNOSTIC, 28, -4.727163374323e-01, 1.358517724821e-06, 4.2487e+00, 1.0440e-01, - 2DIAGNOSTIC, 29, -4.727141354494e-01, 1.199971534860e-06, 4.3429e+00, 9.4177e-02, - 2DIAGNOSTIC, 30, -4.727123026499e-01, 1.058276822931e-06, 4.4431e+00, 1.0017e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.127885804681e-01, 1.797693134862e+308, 6.1165e+00, 1.6734e+00, - 2DIAGNOSTIC, 2, -4.127870255281e-01, 1.797693134862e+308, 6.8101e+00, 6.9359e-01, - 2DIAGNOSTIC, 3, -4.127869533558e-01, 1.797693134862e+308, 7.6954e+00, 8.8533e-01, - 2DIAGNOSTIC, 4, -4.127866897288e-01, 1.797693134862e+308, 8.3231e+00, 6.2769e-01, - 2DIAGNOSTIC, 5, -4.127866051581e-01, 1.797693134862e+308, 9.0156e+00, 6.9243e-01, - 2DIAGNOSTIC, 6, -4.127865720090e-01, 1.797693134862e+308, 9.6459e+00, 6.3038e-01, - 2DIAGNOSTIC, 7, -4.127861161316e-01, 1.797693134862e+308, 1.0304e+01, 6.5797e-01, - 2DIAGNOSTIC, 8, -4.127862353730e-01, 1.797693134862e+308, 1.1015e+01, 7.1060e-01, - 2DIAGNOSTIC, 9, -4.127861520217e-01, 1.797693134862e+308, 1.1665e+01, 6.5086e-01, - 2DIAGNOSTIC, 10, -4.127858976501e-01, 2.890213613896e-06, 1.2254e+01, 5.8850e-01, - 2DIAGNOSTIC, 11, -4.127858199475e-01, 2.719472408444e-06, 1.2895e+01, 6.4120e-01, - 2DIAGNOSTIC, 12, -4.127857718058e-01, 2.500814731091e-06, 1.3560e+01, 6.6443e-01, - 2DIAGNOSTIC, 13, -4.127856879198e-01, 2.321198439861e-06, 1.4199e+01, 6.3975e-01, - 2DIAGNOSTIC, 14, -4.127856161507e-01, 2.162020829671e-06, 1.4829e+01, 6.2944e-01, - 2DIAGNOSTIC, 15, -4.127854105363e-01, 2.020917286030e-06, 1.5397e+01, 5.6791e-01, - 2DIAGNOSTIC, 16, -4.127854155194e-01, 1.906214316685e-06, 1.6025e+01, 6.2833e-01, - 2DIAGNOSTIC, 17, -4.127855683352e-01, 1.799828014938e-06, 1.6667e+01, 6.4220e-01, - 2DIAGNOSTIC, 18, -4.127854240795e-01, 1.710600329143e-06, 1.7366e+01, 6.9836e-01, - 2DIAGNOSTIC, 19, -4.127853364294e-01, 1.630319218737e-06, 1.8011e+01, 6.4530e-01, - 2DIAGNOSTIC, 20, -4.127851124367e-01, 1.545926257694e-06, 1.8560e+01, 5.4933e-01, - 2DIAGNOSTIC, 21, -4.127849381751e-01, 1.465537410962e-06, 1.9191e+01, 6.3078e-01, - 2DIAGNOSTIC, 22, -4.127850448221e-01, 1.398788702263e-06, 1.9748e+01, 5.5740e-01, - 2DIAGNOSTIC, 23, -4.127849286735e-01, 1.336056225883e-06, 2.0403e+01, 6.5499e-01, - 2DIAGNOSTIC, 24, -4.127847489198e-01, 1.276115136124e-06, 2.0960e+01, 5.5685e-01, - 2DIAGNOSTIC, 25, -4.127849445113e-01, 1.225586082988e-06, 2.1667e+01, 7.0708e-01, - 2DIAGNOSTIC, 26, -4.127848743016e-01, 1.181253011594e-06, 2.2290e+01, 6.2307e-01, - 2DIAGNOSTIC, 27, -4.127846892556e-01, 1.143361333028e-06, 2.2905e+01, 6.1496e-01, - 2DIAGNOSTIC, 28, -4.127841949863e-01, 1.095924279479e-06, 2.3519e+01, 6.1397e-01, - 2DIAGNOSTIC, 29, -4.127841330660e-01, 1.052462995491e-06, 2.4160e+01, 6.4041e-01, - 2DIAGNOSTIC, 30, -4.127840607988e-01, 1.009182099283e-06, 2.4791e+01, 6.3176e-01, - Elapsed time (stage 0): 2.5169e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.480947832738e-01, 1.797693134862e+308, 1.9187e-01, 1.9187e-01, - 2DIAGNOSTIC, 2, -6.496879489315e-01, 1.797693134862e+308, 1.9400e-01, 2.1291e-03, - 2DIAGNOSTIC, 3, -6.517625625662e-01, 1.797693134862e+308, 1.9627e-01, 2.2750e-03, - 2DIAGNOSTIC, 4, -6.534532403058e-01, 1.797693134862e+308, 1.9868e-01, 2.4130e-03, - 2DIAGNOSTIC, 5, -6.542153031887e-01, 1.797693134862e+308, 2.0106e-01, 2.3730e-03, - 2DIAGNOSTIC, 6, -6.554308593553e-01, 1.797693134862e+308, 2.0387e-01, 2.8071e-03, - 2DIAGNOSTIC, 7, -6.556941026228e-01, 1.797693134862e+308, 2.0636e-01, 2.4960e-03, - 2DIAGNOSTIC, 8, -6.559271346853e-01, 1.797693134862e+308, 2.0973e-01, 3.3739e-03, - 2DIAGNOSTIC, 9, -6.559122859197e-01, 1.797693134862e+308, 2.1772e-01, 7.9861e-03, - 2DIAGNOSTIC, 10, -6.559122486943e-01, 7.609267500333e-04, 2.2037e-01, 2.6469e-03, - 2DIAGNOSTIC, 11, -6.559122817248e-01, 4.936484704734e-04, 2.2299e-01, 2.6200e-03, - 2DIAGNOSTIC, 12, -6.559123375740e-01, 2.834215444536e-04, 2.2600e-01, 3.0141e-03, - 2DIAGNOSTIC, 13, -6.559124319989e-01, 1.488065513870e-04, 2.2873e-01, 2.7289e-03, - 2DIAGNOSTIC, 14, -6.559125916263e-01, 7.253427401367e-05, 2.3137e-01, 2.6360e-03, - 2DIAGNOSTIC, 15, -6.559128609798e-01, 2.130984536351e-05, 2.3401e-01, 2.6422e-03, - 2DIAGNOSTIC, 16, -6.559133155949e-01, 7.612188257969e-06, 2.3667e-01, 2.6569e-03, - 2DIAGNOSTIC, 17, -6.559140833298e-01, 1.579743841053e-06, 2.3928e-01, 2.6181e-03, - 2DIAGNOSTIC, 18, -6.559153774811e-01, 1.907932901696e-06, 2.4183e-01, 2.5461e-03, - 2DIAGNOSTIC, 19, -6.559175541191e-01, 1.898757968653e-06, 2.4442e-01, 2.5859e-03, - 2DIAGNOSTIC, 20, -6.559211972471e-01, 1.947320346321e-06, 2.4693e-01, 2.5179e-03, - 2DIAGNOSTIC, 21, -6.559272907396e-01, 2.083520558048e-06, 2.4941e-01, 2.4800e-03, - 2DIAGNOSTIC, 22, -6.559373583780e-01, 2.351967750155e-06, 2.5192e-01, 2.5020e-03, - 2DIAGNOSTIC, 23, -6.559538404070e-01, 2.821803082170e-06, 2.5442e-01, 2.5029e-03, - 2DIAGNOSTIC, 24, -6.559805927778e-01, 3.598981254613e-06, 2.5724e-01, 2.8191e-03, - 2DIAGNOSTIC, 25, -6.558632571891e-01, 2.060570007192e-06, 2.5977e-01, 2.5332e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.663816439372e-01, 1.797693134862e+308, 4.8518e-01, 2.2541e-01, - 2DIAGNOSTIC, 2, -5.674920449961e-01, 1.797693134862e+308, 4.9962e-01, 1.4436e-02, - 2DIAGNOSTIC, 3, -5.683290466270e-01, 1.797693134862e+308, 5.1427e-01, 1.4654e-02, - 2DIAGNOSTIC, 4, -5.687250121530e-01, 1.797693134862e+308, 5.2945e-01, 1.5181e-02, - 2DIAGNOSTIC, 5, -5.689228819549e-01, 1.797693134862e+308, 5.4433e-01, 1.4880e-02, - 2DIAGNOSTIC, 6, -5.693140545621e-01, 1.797693134862e+308, 5.6122e-01, 1.6887e-02, - 2DIAGNOSTIC, 7, -5.695894111042e-01, 1.797693134862e+308, 5.8761e-01, 2.6387e-02, - 2DIAGNOSTIC, 8, -5.695952421710e-01, 1.797693134862e+308, 6.0206e-01, 1.4453e-02, - 2DIAGNOSTIC, 9, -5.696234032124e-01, 1.797693134862e+308, 6.1681e-01, 1.4751e-02, - 2DIAGNOSTIC, 10, -5.696388207027e-01, 3.268029488856e-04, 6.3187e-01, 1.5058e-02, - 2DIAGNOSTIC, 11, -5.696621773906e-01, 1.984074373909e-04, 6.4696e-01, 1.5095e-02, - 2DIAGNOSTIC, 12, -5.696847044859e-01, 1.201527230922e-04, 6.6185e-01, 1.4890e-02, - 2DIAGNOSTIC, 13, -5.697258228274e-01, 7.693347717116e-05, 6.7594e-01, 1.4089e-02, - 2DIAGNOSTIC, 14, -5.699710319824e-01, 5.609146423603e-05, 6.9369e-01, 1.7753e-02, - 2DIAGNOSTIC, 15, -5.700470044017e-01, 4.175692213176e-05, 7.1006e-01, 1.6363e-02, - 2DIAGNOSTIC, 16, -5.700553858728e-01, 3.785102207284e-05, 7.3196e-01, 2.1905e-02, - 2DIAGNOSTIC, 17, -5.700848993562e-01, 4.018961218392e-05, 7.7925e-01, 4.7290e-02, - 2DIAGNOSTIC, 18, -5.700848990693e-01, 3.885020489772e-05, 7.9312e-01, 1.3870e-02, - 2DIAGNOSTIC, 19, -5.700849008490e-01, 3.485418655986e-05, 8.0769e-01, 1.4565e-02, - 2DIAGNOSTIC, 20, -5.700849038582e-01, 2.852336999559e-05, 8.2251e-01, 1.4824e-02, - 2DIAGNOSTIC, 21, -5.700849089467e-01, 2.092155710660e-05, 8.3716e-01, 1.4646e-02, - 2DIAGNOSTIC, 22, -5.700849175508e-01, 1.276760911497e-05, 8.5181e-01, 1.4655e-02, - 2DIAGNOSTIC, 23, -5.700849321172e-01, 5.024818710057e-06, 8.6641e-01, 1.4597e-02, - 2DIAGNOSTIC, 24, -5.700849567571e-01, 2.653096021092e-06, 8.8089e-01, 1.4482e-02, - 2DIAGNOSTIC, 25, -5.700849984145e-01, 1.866466237600e-06, 8.9660e-01, 1.5708e-02, - 2DIAGNOSTIC, 26, -5.700850687507e-01, 1.230615841730e-06, 9.1143e-01, 1.4827e-02, - 2DIAGNOSTIC, 27, -5.700851876010e-01, 1.188991382947e-06, 9.2616e-01, 1.4733e-02, - 2DIAGNOSTIC, 28, -5.700853885307e-01, 1.152962159343e-06, 9.4098e-01, 1.4820e-02, - 2DIAGNOSTIC, 29, -5.700857279591e-01, 1.123730096510e-06, 9.5505e-01, 1.4068e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.744979054517e-01, 1.797693134862e+308, 1.3412e+00, 3.8617e-01, - 2DIAGNOSTIC, 2, -4.753392599253e-01, 1.797693134862e+308, 1.4434e+00, 1.0218e-01, - 2DIAGNOSTIC, 3, -4.762724309840e-01, 1.797693134862e+308, 1.5458e+00, 1.0235e-01, - 2DIAGNOSTIC, 4, -4.769373050280e-01, 1.797693134862e+308, 1.6474e+00, 1.0166e-01, - 2DIAGNOSTIC, 5, -4.771201531448e-01, 1.797693134862e+308, 1.7645e+00, 1.1711e-01, - 2DIAGNOSTIC, 6, -4.771706007199e-01, 1.797693134862e+308, 1.9105e+00, 1.4598e-01, - 2DIAGNOSTIC, 7, -4.772042257400e-01, 1.797693134862e+308, 2.0159e+00, 1.0542e-01, - 2DIAGNOSTIC, 8, -4.772662070849e-01, 1.797693134862e+308, 2.1338e+00, 1.1792e-01, - 2DIAGNOSTIC, 9, -4.772759895643e-01, 1.797693134862e+308, 2.2390e+00, 1.0516e-01, - 2DIAGNOSTIC, 10, -4.773034350268e-01, 3.208895577269e-04, 2.3722e+00, 1.3322e-01, - 2DIAGNOSTIC, 11, -4.773221192425e-01, 1.760662114049e-04, 2.4903e+00, 1.1806e-01, - 2DIAGNOSTIC, 12, -4.773275210956e-01, 8.111412881087e-05, 2.6097e+00, 1.1940e-01, - 2DIAGNOSTIC, 13, -4.773296824958e-01, 3.582282801426e-05, 2.7274e+00, 1.1774e-01, - 2DIAGNOSTIC, 14, -4.773281246873e-01, 2.203513599118e-05, 2.8335e+00, 1.0606e-01, - 2DIAGNOSTIC, 15, -4.773329601624e-01, 1.572331014073e-05, 2.9512e+00, 1.1774e-01, - 2DIAGNOSTIC, 16, -4.773266518201e-01, 1.057513190460e-05, 3.0834e+00, 1.3214e-01, - 2DIAGNOSTIC, 17, -4.773282608627e-01, 6.436963940065e-06, 3.2156e+00, 1.3225e-01, - 2DIAGNOSTIC, 18, -4.773256038923e-01, 4.309943414889e-06, 3.3608e+00, 1.4514e-01, - 2DIAGNOSTIC, 19, -4.773256047424e-01, 2.463231715349e-06, 3.4767e+00, 1.1593e-01, - 2DIAGNOSTIC, 20, -4.773256086519e-01, 1.531217323422e-06, 3.5957e+00, 1.1906e-01, - 2DIAGNOSTIC, 21, -4.773256147285e-01, 1.220674145562e-06, 3.6999e+00, 1.0418e-01, - 2DIAGNOSTIC, 22, -4.773242434898e-01, 1.075219314459e-06, 3.8066e+00, 1.0669e-01, - 2DIAGNOSTIC, 23, -4.773229059903e-01, 1.000559650362e-06, 3.9131e+00, 1.0647e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.126206191809e-01, 1.797693134862e+308, 5.2688e+00, 1.3557e+00, - 2DIAGNOSTIC, 2, -4.129321906839e-01, 1.797693134862e+308, 5.8877e+00, 6.1889e-01, - 2DIAGNOSTIC, 3, -4.130335918374e-01, 1.797693134862e+308, 6.5940e+00, 7.0632e-01, - 2DIAGNOSTIC, 4, -4.131178065840e-01, 1.797693134862e+308, 7.3153e+00, 7.2132e-01, - 2DIAGNOSTIC, 5, -4.132380779647e-01, 1.797693134862e+308, 7.9466e+00, 6.3127e-01, - 2DIAGNOSTIC, 6, -4.145666026826e-01, 1.797693134862e+308, 9.5091e+00, 1.5625e+00, - 2DIAGNOSTIC, 7, -4.145653930183e-01, 1.797693134862e+308, 1.0881e+01, 1.3718e+00, - 2DIAGNOSTIC, 8, -4.145654375342e-01, 1.797693134862e+308, 1.1600e+01, 7.1913e-01, - 2DIAGNOSTIC, 9, -4.145650437647e-01, 1.797693134862e+308, 1.2334e+01, 7.3380e-01, - 2DIAGNOSTIC, 10, -4.145649416178e-01, 3.700843930844e-04, 1.2952e+01, 6.1816e-01, - 2DIAGNOSTIC, 11, -4.145648717205e-01, 2.904548470844e-04, 1.3563e+01, 6.1053e-01, - 2DIAGNOSTIC, 12, -4.145647071724e-01, 2.158759586317e-04, 1.4283e+01, 7.2085e-01, - 2DIAGNOSTIC, 13, -4.145645990925e-01, 1.399813972002e-04, 1.5049e+01, 7.6530e-01, - 2DIAGNOSTIC, 14, -4.145645257659e-01, 6.719490215573e-05, 1.5730e+01, 6.8168e-01, - 2DIAGNOSTIC, 15, -4.145644324665e-01, 1.954707012489e-06, 1.6523e+01, 7.9248e-01, - 2DIAGNOSTIC, 16, -4.145643088539e-01, 1.882682480608e-06, 1.7238e+01, 7.1521e-01, - 2DIAGNOSTIC, 17, -4.145641785641e-01, 1.774845222534e-06, 1.7866e+01, 6.2772e-01, - 2DIAGNOSTIC, 18, -4.145640611388e-01, 1.685785516702e-06, 1.8486e+01, 6.2050e-01, - 2DIAGNOSTIC, 19, -4.145639654676e-01, 1.596193108896e-06, 1.9210e+01, 7.2383e-01, - 2DIAGNOSTIC, 20, -4.145640186668e-01, 1.521285602699e-06, 1.9918e+01, 7.0814e-01, - 2DIAGNOSTIC, 21, -4.145639040914e-01, 1.454097212347e-06, 2.0637e+01, 7.1917e-01, - 2DIAGNOSTIC, 22, -4.145637960593e-01, 1.390504337860e-06, 2.1279e+01, 6.4185e-01, - 2DIAGNOSTIC, 23, -4.145637162305e-01, 1.332270672165e-06, 2.1903e+01, 6.2367e-01, - 2DIAGNOSTIC, 24, -4.145638331062e-01, 1.285005230618e-06, 2.2613e+01, 7.1050e-01, - 2DIAGNOSTIC, 25, -4.145638231359e-01, 1.242414873787e-06, 2.3316e+01, 7.0230e-01, - 2DIAGNOSTIC, 26, -4.145638130051e-01, 1.202571519969e-06, 2.4019e+01, 7.0351e-01, - 2DIAGNOSTIC, 27, -4.145637132013e-01, 1.162082613713e-06, 2.4736e+01, 7.1670e-01, - 2DIAGNOSTIC, 28, -4.145635432480e-01, 1.119172233964e-06, 2.5354e+01, 6.1756e-01, - 2DIAGNOSTIC, 29, -4.145634604433e-01, 1.076603181466e-06, 2.6171e+01, 8.1721e-01, - 2DIAGNOSTIC, 30, -4.145635580997e-01, 1.042290071820e-06, 2.7009e+01, 8.3870e-01, - 2DIAGNOSTIC, 31, -4.145634420361e-01, 1.006816833543e-06, 2.7711e+01, 7.0190e-01, - Elapsed time (stage 1): 2.8105e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.052693591904e-01, 1.797693134862e+308, 2.6433e-01, 2.6433e-01, - 1DIAGNOSTIC, 2, -9.196325384088e-01, 1.797693134862e+308, 3.6877e-01, 1.0443e-01, - 1DIAGNOSTIC, 3, -9.319308963108e-01, 1.797693134862e+308, 4.6910e-01, 1.0033e-01, - 1DIAGNOSTIC, 4, -9.400463558570e-01, 1.797693134862e+308, 5.6710e-01, 9.7995e-02, - 1DIAGNOSTIC, 5, -9.467637489879e-01, 1.797693134862e+308, 6.6432e-01, 9.7222e-02, - 1DIAGNOSTIC, 6, -9.510950127975e-01, 1.797693134862e+308, 7.6436e-01, 1.0004e-01, - 1DIAGNOSTIC, 7, -9.543569448629e-01, 1.797693134862e+308, 8.5936e-01, 9.5008e-02, - 1DIAGNOSTIC, 8, -9.565965698720e-01, 1.797693134862e+308, 9.5873e-01, 9.9367e-02, - 1DIAGNOSTIC, 9, -9.581488785172e-01, 1.797693134862e+308, 1.0611e+00, 1.0240e-01, - 1DIAGNOSTIC, 10, -9.591647733021e-01, 3.389031863675e-03, 1.1624e+00, 1.0125e-01, - 1DIAGNOSTIC, 11, -9.594274333708e-01, 2.231876295121e-03, 1.2625e+00, 1.0017e-01, - 1DIAGNOSTIC, 12, -9.595325670894e-01, 1.428565975789e-03, 1.3600e+00, 9.7421e-02, - 1DIAGNOSTIC, 13, -9.596866893213e-01, 9.068891380502e-04, 1.4559e+00, 9.5956e-02, - 1DIAGNOSTIC, 14, -9.598289903319e-01, 5.529557074911e-04, 1.5562e+00, 1.0032e-01, - 1DIAGNOSTIC, 15, -9.598684825473e-01, 3.301498334377e-04, 1.6508e+00, 9.4564e-02, - 1DIAGNOSTIC, 16, -9.600181934762e-01, 1.884751701441e-04, 1.7462e+00, 9.5441e-02, - 1DIAGNOSTIC, 17, -9.600119281846e-01, 1.032283915953e-04, 1.8437e+00, 9.7487e-02, - 1DIAGNOSTIC, 18, -9.601780000311e-01, 5.769649115893e-05, 1.9366e+00, 9.2841e-02, - 1DIAGNOSTIC, 19, -9.601721026805e-01, 3.569261683189e-05, 2.0353e+00, 9.8704e-02, - 1DIAGNOSTIC, 20, -9.603391319885e-01, 3.037453855102e-05, 2.1335e+00, 9.8207e-02, - 1DIAGNOSTIC, 21, -9.603267507847e-01, 2.639701514130e-05, 2.2356e+00, 1.0208e-01, - 1DIAGNOSTIC, 22, -9.604927439580e-01, 2.413058219722e-05, 2.3324e+00, 9.6847e-02, - 1DIAGNOSTIC, 23, -9.604804238465e-01, 2.170346616955e-05, 2.4370e+00, 1.0459e-01, - 1DIAGNOSTIC, 24, -9.606252690843e-01, 2.116586308944e-05, 2.5400e+00, 1.0296e-01, - 1DIAGNOSTIC, 25, -9.606043815002e-01, 1.896066144929e-05, 2.6370e+00, 9.6988e-02, - 1DIAGNOSTIC, 26, -9.607229932024e-01, 1.837740446341e-05, 2.7356e+00, 9.8618e-02, - 1DIAGNOSTIC, 27, -9.607034927273e-01, 1.587153083469e-05, 2.8353e+00, 9.9687e-02, - 1DIAGNOSTIC, 28, -9.608081291512e-01, 1.507033674789e-05, 2.9321e+00, 9.6819e-02, - 1DIAGNOSTIC, 29, -9.607898404026e-01, 1.270145620363e-05, 3.0358e+00, 1.0370e-01, - 1DIAGNOSTIC, 30, -9.608245769219e-01, 1.142791499152e-05, 3.1387e+00, 1.0287e-01, - 1DIAGNOSTIC, 31, -9.608069072703e-01, 8.930468610981e-06, 3.2427e+00, 1.0408e-01, - 1DIAGNOSTIC, 32, -9.608918682889e-01, 8.193931215136e-06, 3.3531e+00, 1.1040e-01, - 1DIAGNOSTIC, 33, -9.608762094219e-01, 6.512145862031e-06, 3.4503e+00, 9.7179e-02, - 1DIAGNOSTIC, 34, -9.609334430526e-01, 6.195930461736e-06, 3.5451e+00, 9.4738e-02, - 1DIAGNOSTIC, 35, -9.609206956291e-01, 5.088777960759e-06, 3.6466e+00, 1.0159e-01, - 1DIAGNOSTIC, 36, -9.609662933433e-01, 5.021395811957e-06, 3.7496e+00, 1.0301e-01, - 1DIAGNOSTIC, 37, -9.609571709374e-01, 4.298268883273e-06, 3.8500e+00, 1.0030e-01, - 1DIAGNOSTIC, 38, -9.610612853036e-01, 4.927806510877e-06, 3.9466e+00, 9.6650e-02, - 1DIAGNOSTIC, 39, -9.610537487918e-01, 4.915544544640e-06, 4.0502e+00, 1.0357e-01, - 1DIAGNOSTIC, 40, -9.610838288437e-01, 5.013136225394e-06, 4.1468e+00, 9.6599e-02, - 1DIAGNOSTIC, 41, -9.610885046396e-01, 4.597838700562e-06, 4.2493e+00, 1.0258e-01, - 1DIAGNOSTIC, 42, -9.611045455101e-01, 4.557117523184e-06, 4.3532e+00, 1.0389e-01, - 1DIAGNOSTIC, 43, -9.611130197154e-01, 4.087663116353e-06, 4.4525e+00, 9.9307e-02, - 1DIAGNOSTIC, 44, -9.611069217874e-01, 3.668174859493e-06, 4.5479e+00, 9.5306e-02, - 1DIAGNOSTIC, 45, -9.611310639489e-01, 3.063457710725e-06, 4.6518e+00, 1.0396e-01, - 1DIAGNOSTIC, 46, -9.611162680388e-01, 2.462283176654e-06, 4.7503e+00, 9.8452e-02, - 1DIAGNOSTIC, 47, -9.611420640088e-01, 1.808506655824e-06, 4.8519e+00, 1.0164e-01, - 1DIAGNOSTIC, 48, -9.611280582777e-01, 1.631343203867e-06, 4.9524e+00, 1.0048e-01, - 1DIAGNOSTIC, 49, -9.611596591930e-01, 1.514206699391e-06, 5.0561e+00, 1.0372e-01, - 1DIAGNOSTIC, 50, -9.611408397914e-01, 1.381379778672e-06, 5.1606e+00, 1.0446e-01, - 1DIAGNOSTIC, 51, -9.611750075369e-01, 1.410476482337e-06, 5.2651e+00, 1.0455e-01, - 1DIAGNOSTIC, 52, -9.611592517543e-01, 1.359510544110e-06, 5.3691e+00, 1.0401e-01, - 1DIAGNOSTIC, 53, -9.611983698080e-01, 1.510052109837e-06, 5.4793e+00, 1.1016e-01, - 1DIAGNOSTIC, 54, -9.611819540140e-01, 1.435258174788e-06, 5.5842e+00, 1.0488e-01, - 1DIAGNOSTIC, 55, -9.612246955825e-01, 1.649968349119e-06, 5.6833e+00, 9.9165e-02, - 1DIAGNOSTIC, 56, -9.612019447574e-01, 1.546643397354e-06, 5.7876e+00, 1.0422e-01, - 1DIAGNOSTIC, 57, -9.612501321067e-01, 1.745488108905e-06, 5.8845e+00, 9.6896e-02, - 1DIAGNOSTIC, 58, -9.612213270192e-01, 1.593858896809e-06, 5.9794e+00, 9.4956e-02, - 1DIAGNOSTIC, 59, -9.612742080174e-01, 1.780561173628e-06, 6.0811e+00, 1.0172e-01, - 1DIAGNOSTIC, 60, -9.612403666291e-01, 1.570579969960e-06, 6.1825e+00, 1.0137e-01, - 1DIAGNOSTIC, 61, -9.612965759744e-01, 1.716164751760e-06, 6.2796e+00, 9.7086e-02, - 1DIAGNOSTIC, 62, -9.612593718198e-01, 1.477337607563e-06, 6.3792e+00, 9.9665e-02, - 1DIAGNOSTIC, 63, -9.612435577262e-01, 1.272232743942e-06, 6.4786e+00, 9.9319e-02, - 1DIAGNOSTIC, 64, -9.612006104921e-01, 7.225765844172e-07, 6.5843e+00, 1.0571e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.187080531506e-01, 1.797693134862e+308, 7.4608e+00, 8.7650e-01, - 1DIAGNOSTIC, 2, -9.227324000750e-01, 1.797693134862e+308, 8.1445e+00, 6.8368e-01, - 1DIAGNOSTIC, 3, -9.268876071150e-01, 1.797693134862e+308, 8.8207e+00, 6.7629e-01, - 1DIAGNOSTIC, 4, -9.296625155536e-01, 1.797693134862e+308, 9.4994e+00, 6.7870e-01, - 1DIAGNOSTIC, 5, -9.319463291843e-01, 1.797693134862e+308, 1.0163e+01, 6.6314e-01, - 1DIAGNOSTIC, 6, -9.339054627370e-01, 1.797693134862e+308, 1.0855e+01, 6.9222e-01, - 1DIAGNOSTIC, 7, -9.355190904634e-01, 1.797693134862e+308, 1.1531e+01, 6.7632e-01, - 1DIAGNOSTIC, 8, -9.370090752935e-01, 1.797693134862e+308, 1.2226e+01, 6.9488e-01, - 1DIAGNOSTIC, 9, -9.381484153008e-01, 1.797693134862e+308, 1.2890e+01, 6.6407e-01, - 1DIAGNOSTIC, 10, -9.391965378090e-01, 1.349519047859e-03, 1.3550e+01, 6.6016e-01, - 1DIAGNOSTIC, 11, -9.399927595782e-01, 1.017414580234e-03, 1.4214e+01, 6.6340e-01, - 1DIAGNOSTIC, 12, -9.407006276044e-01, 7.682521122120e-04, 1.4884e+01, 6.7070e-01, - 1DIAGNOSTIC, 13, -9.412593678678e-01, 5.978626310362e-04, 1.5553e+01, 6.6861e-01, - 1DIAGNOSTIC, 14, -9.418765149611e-01, 4.708109821654e-04, 1.6225e+01, 6.7155e-01, - 1DIAGNOSTIC, 15, -9.423313607440e-01, 3.728432120148e-04, 1.6915e+01, 6.9093e-01, - 1DIAGNOSTIC, 16, -9.427628247412e-01, 2.981412877604e-04, 1.7589e+01, 6.7355e-01, - 1DIAGNOSTIC, 17, -9.432859694945e-01, 2.427584072669e-04, 1.8267e+01, 6.7807e-01, - 1DIAGNOSTIC, 18, -9.436645117288e-01, 2.024462471347e-04, 1.8951e+01, 6.8351e-01, - 1DIAGNOSTIC, 19, -9.441305845012e-01, 1.731316231031e-04, 1.9610e+01, 6.5968e-01, - 1DIAGNOSTIC, 20, -9.444667375278e-01, 1.515809941769e-04, 2.0289e+01, 6.7912e-01, - 1DIAGNOSTIC, 21, -9.447927786920e-01, 1.341575848440e-04, 2.0960e+01, 6.7082e-01, - 1DIAGNOSTIC, 22, -9.451108976432e-01, 1.199375137674e-04, 2.1643e+01, 6.8276e-01, - 1DIAGNOSTIC, 23, -9.454240020176e-01, 1.071687464860e-04, 2.2309e+01, 6.6561e-01, - 1DIAGNOSTIC, 24, -9.457316310396e-01, 9.710813051837e-05, 2.2983e+01, 6.7460e-01, - 1DIAGNOSTIC, 25, -9.460401927216e-01, 8.801163886117e-05, 2.3655e+01, 6.7150e-01, - 1DIAGNOSTIC, 26, -9.463367688381e-01, 7.981472405731e-05, 2.4328e+01, 6.7288e-01, - 1DIAGNOSTIC, 27, -9.466294256385e-01, 7.389086835081e-05, 2.5005e+01, 6.7760e-01, - 1DIAGNOSTIC, 28, -9.469094744126e-01, 6.852946416808e-05, 2.5675e+01, 6.7037e-01, - 1DIAGNOSTIC, 29, -9.471933773861e-01, 6.491876947647e-05, 2.6344e+01, 6.6866e-01, - 1DIAGNOSTIC, 30, -9.474748760615e-01, 6.166341608198e-05, 2.7026e+01, 6.8157e-01, - 1DIAGNOSTIC, 31, -9.477451359902e-01, 5.862432846459e-05, 2.7701e+01, 6.7500e-01, - 1DIAGNOSTIC, 32, -9.480035984340e-01, 5.569868160943e-05, 2.8388e+01, 6.8723e-01, - 1DIAGNOSTIC, 33, -9.482602555523e-01, 5.291925788696e-05, 2.9059e+01, 6.7154e-01, - 1DIAGNOSTIC, 34, -9.484959730451e-01, 5.013625387998e-05, 2.9734e+01, 6.7451e-01, - 1DIAGNOSTIC, 35, -9.487247289912e-01, 4.741808703536e-05, 3.0401e+01, 6.6738e-01, - 1DIAGNOSTIC, 36, -9.489443716526e-01, 4.470515200786e-05, 3.1069e+01, 6.6732e-01, - 1DIAGNOSTIC, 37, -9.491498966968e-01, 4.198546566197e-05, 3.1734e+01, 6.6531e-01, - 1DIAGNOSTIC, 38, -9.493453501737e-01, 3.922262558582e-05, 3.2394e+01, 6.5986e-01, - 1DIAGNOSTIC, 39, -9.495314067297e-01, 3.653505831150e-05, 3.3071e+01, 6.7674e-01, - 1DIAGNOSTIC, 40, -9.497087445455e-01, 3.399511001302e-05, 3.3745e+01, 6.7412e-01, - 1DIAGNOSTIC, 41, -9.498754274514e-01, 3.158673393778e-05, 3.4419e+01, 6.7427e-01, - 1DIAGNOSTIC, 42, -9.500334452418e-01, 2.930404748499e-05, 3.5099e+01, 6.8007e-01, - 1DIAGNOSTIC, 43, -9.501838285911e-01, 2.722195045744e-05, 3.5778e+01, 6.7874e-01, - 1DIAGNOSTIC, 44, -9.503264105164e-01, 2.526336177397e-05, 3.6481e+01, 7.0297e-01, - 1DIAGNOSTIC, 45, -9.504528347619e-01, 2.339379556459e-05, 3.7160e+01, 6.7919e-01, - 1DIAGNOSTIC, 46, -9.505915640518e-01, 2.175711420529e-05, 3.7846e+01, 6.8609e-01, - 1DIAGNOSTIC, 47, -9.507144189776e-01, 2.025100910818e-05, 3.8522e+01, 6.7620e-01, - 1DIAGNOSTIC, 48, -9.508318377475e-01, 1.887278524745e-05, 3.9190e+01, 6.6749e-01, - 1DIAGNOSTIC, 49, -9.509385871810e-01, 1.758480772084e-05, 3.9867e+01, 6.7697e-01, - 1DIAGNOSTIC, 50, -9.510442250114e-01, 1.641056804892e-05, 4.0537e+01, 6.7035e-01, - 1DIAGNOSTIC, 51, -9.511443188351e-01, 1.532489216610e-05, 4.1198e+01, 6.6103e-01, - 1DIAGNOSTIC, 52, -9.512286534397e-01, 1.425473355796e-05, 4.1880e+01, 6.8222e-01, - 1DIAGNOSTIC, 53, -9.513188486494e-01, 1.326780795234e-05, 4.2561e+01, 6.8081e-01, - 1DIAGNOSTIC, 54, -9.513953403000e-01, 1.230896444354e-05, 4.3243e+01, 6.8223e-01, - 1DIAGNOSTIC, 55, -9.514809456244e-01, 1.140453021458e-05, 4.3913e+01, 6.6948e-01, - 1DIAGNOSTIC, 56, -9.515543164242e-01, 1.061741275232e-05, 4.4591e+01, 6.7822e-01, - 1DIAGNOSTIC, 57, -9.516248113237e-01, 9.901057835309e-06, 4.5261e+01, 6.6944e-01, - 1DIAGNOSTIC, 58, -9.516948546165e-01, 9.273616975555e-06, 4.5929e+01, 6.6830e-01, - 1DIAGNOSTIC, 59, -9.517603492980e-01, 8.695042905776e-06, 4.6620e+01, 6.9154e-01, - 1DIAGNOSTIC, 60, -9.518200726885e-01, 8.169238474267e-06, 4.7314e+01, 6.9408e-01, - 1DIAGNOSTIC, 61, -9.518754523917e-01, 7.684285415463e-06, 4.7985e+01, 6.7048e-01, - 1DIAGNOSTIC, 62, -9.519264970249e-01, 7.173926044025e-06, 4.8661e+01, 6.7636e-01, - 1DIAGNOSTIC, 63, -9.519815688425e-01, 6.725182417001e-06, 4.9345e+01, 6.8406e-01, - 1DIAGNOSTIC, 64, -9.520316601892e-01, 6.276778562790e-06, 5.0020e+01, 6.7479e-01, - 1DIAGNOSTIC, 65, -9.520739312258e-01, 5.870266590092e-06, 5.0692e+01, 6.7144e-01, - 1DIAGNOSTIC, 66, -9.521079888922e-01, 5.441987070441e-06, 5.1371e+01, 6.7977e-01, - 1DIAGNOSTIC, 67, -9.521420870301e-01, 5.012833371964e-06, 5.2052e+01, 6.8042e-01, - 1DIAGNOSTIC, 68, -9.521716460664e-01, 4.593079420346e-06, 5.2722e+01, 6.7065e-01, - 1DIAGNOSTIC, 69, -9.522025623051e-01, 4.202324712444e-06, 5.3404e+01, 6.8190e-01, - 1DIAGNOSTIC, 70, -9.522289789800e-01, 3.827431385998e-06, 5.4080e+01, 6.7553e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.059259448883e-01, 1.797693134862e+308, 5.9794e+01, 5.7139e+00, - 1DIAGNOSTIC, 2, -9.094168161308e-01, 1.797693134862e+308, 6.5196e+01, 5.4026e+00, - 1DIAGNOSTIC, 3, -9.124878536759e-01, 1.797693134862e+308, 7.0597e+01, 5.4002e+00, - 1DIAGNOSTIC, 4, -9.154906645125e-01, 1.797693134862e+308, 7.5994e+01, 5.3978e+00, - 1DIAGNOSTIC, 5, -9.181960324634e-01, 1.797693134862e+308, 8.1376e+01, 5.3817e+00, - 1DIAGNOSTIC, 6, -9.204607311215e-01, 1.797693134862e+308, 8.6768e+01, 5.3915e+00, - 1DIAGNOSTIC, 7, -9.223358037775e-01, 1.797693134862e+308, 9.2216e+01, 5.4482e+00, - 1DIAGNOSTIC, 8, -9.239121023514e-01, 1.797693134862e+308, 9.7619e+01, 5.4027e+00, - 1DIAGNOSTIC, 9, -9.251510002898e-01, 1.797693134862e+308, 1.0305e+02, 5.4330e+00, - 1DIAGNOSTIC, 10, -9.263352472367e-01, 1.419500514272e-03, 1.0844e+02, 5.3838e+00, - 1DIAGNOSTIC, 11, -9.272867403218e-01, 1.120054598536e-03, 1.1390e+02, 5.4605e+00, - 1DIAGNOSTIC, 12, -9.282747010946e-01, 8.849288448132e-04, 1.1930e+02, 5.4073e+00, - 1DIAGNOSTIC, 13, -9.289584157902e-01, 6.946038974854e-04, 1.2472e+02, 5.4134e+00, - 1DIAGNOSTIC, 14, -9.297480791134e-01, 5.514953745168e-04, 1.3016e+02, 5.4389e+00, - 1DIAGNOSTIC, 15, -9.305317763964e-01, 4.483514431043e-04, 1.3560e+02, 5.4429e+00, - 1DIAGNOSTIC, 16, -9.311850801168e-01, 3.727317107475e-04, 1.4102e+02, 5.4265e+00, - 1DIAGNOSTIC, 17, -9.318582003718e-01, 3.175867740173e-04, 1.4647e+02, 5.4416e+00, - 1DIAGNOSTIC, 18, -9.325644746113e-01, 2.781135421517e-04, 1.5192e+02, 5.4534e+00, - 1DIAGNOSTIC, 19, -9.333052503982e-01, 2.488533427892e-04, 1.5740e+02, 5.4805e+00, - 1DIAGNOSTIC, 20, -9.340610213675e-01, 2.290293923254e-04, 1.6281e+02, 5.4122e+00, - 1DIAGNOSTIC, 21, -9.347231747887e-01, 2.131784543891e-04, 1.6827e+02, 5.4545e+00, - 1DIAGNOSTIC, 22, -9.353084657978e-01, 2.008288635234e-04, 1.7369e+02, 5.4228e+00, - 1DIAGNOSTIC, 23, -9.358207939750e-01, 1.866627027393e-04, 1.7916e+02, 5.4660e+00, - 1DIAGNOSTIC, 24, -9.362622630005e-01, 1.718317887660e-04, 1.8456e+02, 5.4001e+00, - 1DIAGNOSTIC, 25, -9.366436305133e-01, 1.563154495351e-04, 1.9000e+02, 5.4489e+00, - 1DIAGNOSTIC, 26, -9.369732080628e-01, 1.388743006607e-04, 1.9546e+02, 5.4538e+00, - 1DIAGNOSTIC, 27, -9.372633575845e-01, 1.205868114858e-04, 2.0089e+02, 5.4358e+00, - 1DIAGNOSTIC, 28, -9.375187592784e-01, 1.027508817570e-04, 2.0635e+02, 5.4508e+00, - 1DIAGNOSTIC, 29, -9.377425802877e-01, 8.660859331990e-05, 2.1180e+02, 5.4516e+00, - 1DIAGNOSTIC, 30, -9.379400979438e-01, 7.308065848200e-05, 2.1719e+02, 5.3921e+00, - 1DIAGNOSTIC, 31, -9.381160031922e-01, 6.179068588749e-05, 2.2263e+02, 5.4424e+00, - 1DIAGNOSTIC, 32, -9.382699897447e-01, 5.243658378293e-05, 2.2806e+02, 5.4309e+00, - 1DIAGNOSTIC, 33, -9.384147109783e-01, 4.479251180797e-05, 2.3351e+02, 5.4440e+00, - 1DIAGNOSTIC, 34, -9.385434296076e-01, 3.850626175068e-05, 2.3892e+02, 5.4100e+00, - 1DIAGNOSTIC, 35, -9.386567627615e-01, 3.328147317281e-05, 2.4440e+02, 5.4865e+00, - 1DIAGNOSTIC, 36, -9.387658738130e-01, 2.895180008082e-05, 2.4981e+02, 5.4085e+00, - 1DIAGNOSTIC, 37, -9.388634427964e-01, 2.534929204413e-05, 2.5527e+02, 5.4608e+00, - 1DIAGNOSTIC, 38, -9.389485353129e-01, 2.230890043087e-05, 2.6070e+02, 5.4295e+00, - 1DIAGNOSTIC, 39, -9.390318451218e-01, 1.975647108390e-05, 2.6615e+02, 5.4474e+00, - 1DIAGNOSTIC, 40, -9.391058518384e-01, 1.757365740746e-05, 2.7157e+02, 5.4260e+00, - 1DIAGNOSTIC, 41, -9.391725856430e-01, 1.568240911625e-05, 2.7709e+02, 5.5192e+00, - 1DIAGNOSTIC, 42, -9.392360376582e-01, 1.401899891043e-05, 2.8257e+02, 5.4710e+00, - 1DIAGNOSTIC, 43, -9.392988754223e-01, 1.262251220797e-05, 2.8798e+02, 5.4175e+00, - 1DIAGNOSTIC, 44, -9.393545732735e-01, 1.141743911607e-05, 2.9343e+02, 5.4507e+00, - 1DIAGNOSTIC, 45, -9.394048177756e-01, 1.033804447093e-05, 2.9888e+02, 5.4460e+00, - 1DIAGNOSTIC, 46, -9.394525667849e-01, 9.412876068725e-06, 3.0428e+02, 5.3998e+00, - 1DIAGNOSTIC, 47, -9.394966337578e-01, 8.601175713167e-06, 3.0972e+02, 5.4453e+00, - 1DIAGNOSTIC, 48, -9.395373408292e-01, 7.852728655670e-06, 3.1515e+02, 5.4230e+00, - 1DIAGNOSTIC, 49, -9.395791182931e-01, 7.215354017924e-06, 3.2057e+02, 5.4271e+00, - 1DIAGNOSTIC, 50, -9.396178714814e-01, 6.653780419405e-06, 3.2600e+02, 5.4265e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.055107518396e-01, 1.797693134862e+308, 3.7082e+02, 4.4814e+01, - 1DIAGNOSTIC, 2, -9.066335631408e-01, 1.797693134862e+308, 4.1511e+02, 4.4297e+01, - 1DIAGNOSTIC, 3, -9.081471201610e-01, 1.797693134862e+308, 4.5916e+02, 4.4043e+01, - 1DIAGNOSTIC, 4, -9.096521257343e-01, 1.797693134862e+308, 5.0365e+02, 4.4496e+01, - 1DIAGNOSTIC, 5, -9.111324382670e-01, 1.797693134862e+308, 5.4775e+02, 4.4099e+01, - 1DIAGNOSTIC, 6, -9.126464761831e-01, 1.797693134862e+308, 5.9225e+02, 4.4495e+01, - 1DIAGNOSTIC, 7, -9.141389896159e-01, 1.797693134862e+308, 6.3636e+02, 4.4119e+01, - 1DIAGNOSTIC, 8, -9.155586030585e-01, 1.797693134862e+308, 6.8043e+02, 4.4068e+01, - 1DIAGNOSTIC, 9, -9.168716625357e-01, 1.797693134862e+308, 7.2457e+02, 4.4142e+01, - 1DIAGNOSTIC, 10, -9.180585128207e-01, 9.083394083093e-04, 7.6940e+02, 4.4823e+01, - 1DIAGNOSTIC, 11, -9.191283485260e-01, 8.108673339240e-04, 8.1382e+02, 4.4422e+01, - 1DIAGNOSTIC, 12, -9.199940811043e-01, 7.080370601268e-04, 8.5836e+02, 4.4543e+01, - 1DIAGNOSTIC, 13, -9.207596865818e-01, 6.113202782597e-04, 9.0294e+02, 4.4577e+01, - 1DIAGNOSTIC, 14, -9.214553689197e-01, 5.215130537259e-04, 9.4793e+02, 4.4988e+01, - 1DIAGNOSTIC, 15, -9.221109674592e-01, 4.400345951158e-04, 9.9457e+02, 4.6641e+01, - 1DIAGNOSTIC, 16, -9.226303505568e-01, 3.675906777964e-04, 1.0415e+03, 4.6964e+01, - 1DIAGNOSTIC, 17, -9.231124738591e-01, 3.057212754183e-04, 1.0885e+03, 4.6948e+01, - 1DIAGNOSTIC, 18, -9.235562950735e-01, 2.544597039649e-04, 1.1356e+03, 4.7081e+01, - 1DIAGNOSTIC, 19, -9.239715679009e-01, 2.130639757566e-04, 1.1829e+03, 4.7343e+01, - 1DIAGNOSTIC, 20, -9.243694911323e-01, 1.804194242350e-04, 1.2302e+03, 4.7335e+01, - Elapsed time (stage 2): 1231 - - -Total elapsed time: 1284 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:23 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:23 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:26 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:30 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:33 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:33 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8491 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:34 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:37 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:37 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8542 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:37 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/anat/sub-PNC002_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:40 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8588 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:40 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8593 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:40 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:44 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:44 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:44 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:45 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:46 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:48 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:48 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:49 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:50 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/surf/sub-PNC002_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:09:52 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:02 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:13 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01/sub-PNC002_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC002 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:13 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC002 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:14 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC002 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:14 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9186 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:16 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:16 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc/sub-PNC002_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/xfm/sub-PNC002_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9226 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:17 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:17 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC002_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 71.400 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/logs/proc_func_18-03-2024-4360.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:22 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC002 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-01/QC/sub-PNC002_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24810_micapipe_proc-func_sub-PNC002_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC002* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 71.450 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC002_ses-01 -========================reprocessing without filter=================== -sub-PNC002_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC002 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC002 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC002 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC002 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:26 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:10:26 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-1_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:12:32 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:14:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:14:54 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.63 (mm) at sub-brick 190 -++ Max delta displ in automask = 0.33 (mm) at sub-brick 134 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:27:48 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:28:06 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-2_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:30:17 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:32:26 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-02/func/sub-PNC002_ses-02_task-rest_echo-3_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:34:39 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.825 -2.780 2.798 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.928 -4.965 5.134 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:39:27 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:39:54 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55e980fdf6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.102, 46.3661, -138.053] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e980e56730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e980ff6320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55e980fe2fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [73.8093, 106.5, -144.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e980fe8e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e9817f3230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55e9817f15c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.102, 46.3661, -138.053] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e980fe53f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e98231d450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55e9817efda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [73.8093, 106.5, -144.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e980fec360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e982b17780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.982549911237e-01, 1.797693134862e+308, 4.2558e-02, 4.2558e-02, - 2DIAGNOSTIC, 2, -5.992568480460e-01, 1.797693134862e+308, 4.3875e-02, 1.3170e-03, - 2DIAGNOSTIC, 3, -6.003413346719e-01, 1.797693134862e+308, 4.5193e-02, 1.3180e-03, - 2DIAGNOSTIC, 4, -6.015306716831e-01, 1.797693134862e+308, 4.6567e-02, 1.3740e-03, - 2DIAGNOSTIC, 5, -6.032135220839e-01, 1.797693134862e+308, 4.8150e-02, 1.5829e-03, - 2DIAGNOSTIC, 6, -6.049846657795e-01, 1.797693134862e+308, 4.9704e-02, 1.5540e-03, - 2DIAGNOSTIC, 7, -6.065896891319e-01, 1.797693134862e+308, 5.1328e-02, 1.6239e-03, - 2DIAGNOSTIC, 8, -6.078499824315e-01, 1.797693134862e+308, 5.2931e-02, 1.6029e-03, - 2DIAGNOSTIC, 9, -6.087141289439e-01, 1.797693134862e+308, 5.4543e-02, 1.6119e-03, - 2DIAGNOSTIC, 10, -6.089945258530e-01, 1.270317797241e-03, 5.6380e-02, 1.8370e-03, - 2DIAGNOSTIC, 11, -6.095536639111e-01, 1.085561201560e-03, 5.7898e-02, 1.5180e-03, - 2DIAGNOSTIC, 12, -6.135617880154e-01, 1.029381248942e-03, 6.0126e-02, 2.2280e-03, - 2DIAGNOSTIC, 13, -6.136615509661e-01, 9.277836675254e-04, 6.1642e-02, 1.5161e-03, - 2DIAGNOSTIC, 14, -6.137369472126e-01, 8.003545343496e-04, 6.3180e-02, 1.5380e-03, - 2DIAGNOSTIC, 15, -6.137725627205e-01, 6.723064908513e-04, 6.4944e-02, 1.7638e-03, - 2DIAGNOSTIC, 16, -6.138521449099e-01, 5.519503743068e-04, 6.7186e-02, 2.2428e-03, - 2DIAGNOSTIC, 17, -6.139028688965e-01, 4.383180005882e-04, 6.8686e-02, 1.4999e-03, - 2DIAGNOSTIC, 18, -6.140547979599e-01, 3.330422970761e-04, 7.0222e-02, 1.5359e-03, - 2DIAGNOSTIC, 19, -6.141222766631e-01, 2.326452074475e-04, 7.1722e-02, 1.4999e-03, - 2DIAGNOSTIC, 20, -6.141541735340e-01, 1.289973863905e-04, 7.3430e-02, 1.7080e-03, - 2DIAGNOSTIC, 21, -6.141782248469e-01, 3.391832728609e-05, 7.5651e-02, 2.2209e-03, - 2DIAGNOSTIC, 22, -6.141904624519e-01, 2.973662312545e-05, 7.7209e-02, 1.5578e-03, - 2DIAGNOSTIC, 23, -6.142969830183e-01, 2.739844592584e-05, 7.8944e-02, 1.7350e-03, - 2DIAGNOSTIC, 24, -6.143909537842e-01, 2.604013937123e-05, 8.0702e-02, 1.7581e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -2.876295403309e-01, 1.797693134862e+308, 1.2509e-01, 4.4385e-02, - 2DIAGNOSTIC, 2, -2.881994369137e-01, 1.797693134862e+308, 1.2767e-01, 2.5871e-03, - 2DIAGNOSTIC, 3, -2.904303619369e-01, 1.797693134862e+308, 1.3019e-01, 2.5170e-03, - 2DIAGNOSTIC, 4, -2.934520235598e-01, 1.797693134862e+308, 1.3282e-01, 2.6281e-03, - 2DIAGNOSTIC, 5, -2.978017711983e-01, 1.797693134862e+308, 1.3501e-01, 2.1868e-03, - 2DIAGNOSTIC, 6, -3.003397249838e-01, 1.797693134862e+308, 1.3697e-01, 1.9660e-03, - 2DIAGNOSTIC, 7, -3.022689830552e-01, 1.797693134862e+308, 1.3895e-01, 1.9751e-03, - 2DIAGNOSTIC, 8, -3.053394889268e-01, 1.797693134862e+308, 1.4098e-01, 2.0292e-03, - 2DIAGNOSTIC, 9, -3.476405742030e-01, 1.797693134862e+308, 1.4331e-01, 2.3341e-03, - 2DIAGNOSTIC, 10, -3.781719408605e-01, 1.448069226267e-02, 1.4712e-01, 3.8080e-03, - 2DIAGNOSTIC, 11, -3.799141533324e-01, 1.721767333626e-02, 1.5082e-01, 3.6988e-03, - 2DIAGNOSTIC, 12, -3.819544574458e-01, 1.815352210232e-02, 1.5303e-01, 2.2140e-03, - 2DIAGNOSTIC, 13, -3.848226133613e-01, 1.765223445216e-02, 1.5527e-01, 2.2402e-03, - 2DIAGNOSTIC, 14, -3.881571030940e-01, 1.597370710605e-02, 1.5752e-01, 2.2459e-03, - 2DIAGNOSTIC, 15, -3.906683000670e-01, 1.345580149822e-02, 1.5985e-01, 2.3341e-03, - 2DIAGNOSTIC, 16, -3.936341144676e-01, 1.039252183554e-02, 1.6217e-01, 2.3160e-03, - 2DIAGNOSTIC, 17, -4.021756130599e-01, 7.341763273975e-03, 1.6450e-01, 2.3301e-03, - 2DIAGNOSTIC, 18, -4.206354711859e-01, 4.936152444439e-03, 1.6713e-01, 2.6309e-03, - 2DIAGNOSTIC, 19, -4.308343322213e-01, 4.563579475304e-03, 1.6941e-01, 2.2810e-03, - 2DIAGNOSTIC, 20, -4.371125440111e-01, 5.288011086190e-03, 1.7203e-01, 2.6200e-03, - 2DIAGNOSTIC, 21, -4.423399415555e-01, 5.707053246186e-03, 1.7464e-01, 2.6159e-03, - 2DIAGNOSTIC, 22, -4.469130106166e-01, 5.779824265174e-03, 1.7704e-01, 2.3901e-03, - 2DIAGNOSTIC, 23, -4.535626356744e-01, 5.613538628114e-03, 1.7935e-01, 2.3150e-03, - 2DIAGNOSTIC, 24, -4.601302256784e-01, 5.248908996052e-03, 1.8169e-01, 2.3358e-03, - 2DIAGNOSTIC, 25, -4.736060847403e-01, 4.913895487704e-03, 1.8469e-01, 3.0019e-03, - 2DIAGNOSTIC, 26, -4.790404132250e-01, 4.388332712211e-03, 1.8747e-01, 2.7869e-03, - 2DIAGNOSTIC, 27, -4.833268334899e-01, 3.844837341508e-03, 1.9034e-01, 2.8639e-03, - 2DIAGNOSTIC, 28, -4.932795136583e-01, 3.730135660767e-03, 1.9292e-01, 2.5780e-03, - 2DIAGNOSTIC, 29, -5.182209812159e-01, 4.139818540905e-03, 1.9557e-01, 2.6569e-03, - 2DIAGNOSTIC, 30, -5.554204627533e-01, 5.132775031216e-03, 2.0060e-01, 5.0242e-03, - 2DIAGNOSTIC, 31, -5.555299752203e-01, 5.663284042892e-03, 2.0312e-01, 2.5239e-03, - 2DIAGNOSTIC, 32, -5.586700015650e-01, 5.803426227595e-03, 2.0546e-01, 2.3401e-03, - 2DIAGNOSTIC, 33, -5.609634990759e-01, 5.580411973724e-03, 2.0785e-01, 2.3890e-03, - 2DIAGNOSTIC, 34, -5.639303642095e-01, 5.023964762443e-03, 2.1084e-01, 2.9871e-03, - 2DIAGNOSTIC, 35, -5.708775225710e-01, 4.417284045653e-03, 2.1585e-01, 5.0130e-03, - 2DIAGNOSTIC, 36, -5.709209954382e-01, 3.544229383728e-03, 2.1798e-01, 2.1300e-03, - 2DIAGNOSTIC, 37, -5.710230891543e-01, 2.490959641746e-03, 2.2012e-01, 2.1360e-03, - 2DIAGNOSTIC, 38, -5.712493238617e-01, 1.448149531375e-03, 2.2226e-01, 2.1400e-03, - 2DIAGNOSTIC, 39, -5.716022734007e-01, 7.430056921717e-04, 2.2444e-01, 2.1801e-03, - 2DIAGNOSTIC, 40, -5.721298253279e-01, 6.226498000018e-04, 2.2662e-01, 2.1839e-03, - 2DIAGNOSTIC, 41, -5.729207716898e-01, 4.643214812209e-04, 2.2877e-01, 2.1501e-03, - 2DIAGNOSTIC, 42, -5.737605465683e-01, 3.332229520747e-04, 2.3097e-01, 2.1951e-03, - 2DIAGNOSTIC, 43, -5.747202070270e-01, 2.261195212957e-04, 2.3318e-01, 2.2120e-03, - 2DIAGNOSTIC, 44, -5.757257160481e-01, 1.576257460339e-04, 2.3537e-01, 2.1930e-03, - 2DIAGNOSTIC, 45, -5.764046050190e-01, 1.839070060008e-04, 2.3770e-01, 2.3320e-03, - 2DIAGNOSTIC, 46, -5.777406982041e-01, 2.099100681977e-04, 2.4057e-01, 2.8710e-03, - 2DIAGNOSTIC, 47, -5.787299857744e-01, 2.286006768828e-04, 2.4282e-01, 2.2478e-03, - 2DIAGNOSTIC, 48, -5.799636795237e-01, 2.431168339850e-04, 2.4511e-01, 2.2879e-03, - 2DIAGNOSTIC, 49, -5.873732933433e-01, 3.303958004041e-04, 2.4736e-01, 2.2511e-03, - 2DIAGNOSTIC, 50, -5.927553454779e-01, 4.512446979534e-04, 2.5105e-01, 3.6881e-03, - 2DIAGNOSTIC, 51, -5.927804100306e-01, 5.319988809994e-04, 2.5329e-01, 2.2459e-03, - 2DIAGNOSTIC, 52, -5.957206960333e-01, 6.036199680275e-04, 2.5548e-01, 2.1839e-03, - 2DIAGNOSTIC, 53, -5.967363170049e-01, 6.360386415826e-04, 2.5780e-01, 2.3220e-03, - 2DIAGNOSTIC, 54, -6.034626468402e-01, 6.899840055707e-04, 2.6145e-01, 3.6509e-03, - 2DIAGNOSTIC, 55, -6.295551309786e-01, 9.605354836160e-04, 2.6457e-01, 3.1190e-03, - 2DIAGNOSTIC, 56, -6.310349720037e-01, 1.150317041593e-03, 2.6943e-01, 4.8571e-03, - 2DIAGNOSTIC, 57, -6.316443960520e-01, 1.242792788267e-03, 2.7183e-01, 2.4071e-03, - 2DIAGNOSTIC, 58, -6.334784134226e-01, 1.245370576652e-03, 2.7421e-01, 2.3758e-03, - 2DIAGNOSTIC, 59, -6.349440371971e-01, 1.212571210933e-03, 2.7691e-01, 2.7001e-03, - 2DIAGNOSTIC, 60, -6.352019853152e-01, 1.115296480429e-03, 2.7917e-01, 2.2590e-03, - 2DIAGNOSTIC, 61, -6.352429980404e-01, 9.155570343418e-04, 2.8150e-01, 2.3291e-03, - 2DIAGNOSTIC, 62, -6.355505549827e-01, 6.707831564774e-04, 2.8383e-01, 2.3322e-03, - 2DIAGNOSTIC, 63, -6.359445537432e-01, 3.853387893140e-04, 2.8606e-01, 2.2280e-03, - 2DIAGNOSTIC, 64, -6.366081208713e-01, 1.330372677168e-04, 2.8930e-01, 3.2408e-03, - 2DIAGNOSTIC, 65, -6.365334852657e-01, 1.035754563232e-04, 2.9186e-01, 2.5649e-03, - 2DIAGNOSTIC, 66, -6.366353543855e-01, 7.919229219418e-05, 2.9423e-01, 2.3651e-03, - 2DIAGNOSTIC, 67, -6.372594143878e-01, 5.823302444102e-05, 2.9686e-01, 2.6309e-03, - 2DIAGNOSTIC, 68, -6.373305185165e-01, 4.759709639666e-05, 3.0002e-01, 3.1590e-03, - 2DIAGNOSTIC, 69, -6.375527853033e-01, 4.637075962610e-05, 3.0258e-01, 2.5570e-03, - 2DIAGNOSTIC, 70, -6.375510141494e-01, 4.291021736542e-05, 3.0484e-01, 2.2650e-03, - 2DIAGNOSTIC, 71, -6.376209277287e-01, 3.641626968888e-05, 3.0710e-01, 2.2552e-03, - 2DIAGNOSTIC, 72, -6.376376325962e-01, 2.906770327430e-05, 3.0934e-01, 2.2449e-03, - 2DIAGNOSTIC, 73, -6.376621740802e-01, 2.220089753589e-05, 3.1188e-01, 2.5420e-03, - 2DIAGNOSTIC, 74, -6.377878256524e-01, 1.938418307738e-05, 3.1446e-01, 2.5778e-03, - 2DIAGNOSTIC, 75, -6.380602049066e-01, 1.629411946105e-05, 3.1816e-01, 3.7029e-03, - 2DIAGNOSTIC, 76, -6.380584995934e-01, 1.235451752970e-05, 3.2063e-01, 2.4650e-03, - 2DIAGNOSTIC, 77, -6.380602336047e-01, 1.184150461948e-05, 3.2279e-01, 2.1639e-03, - 2DIAGNOSTIC, 78, -6.380627250356e-01, 1.074980287630e-05, 3.2503e-01, 2.2330e-03, - 2DIAGNOSTIC, 79, -6.380661373311e-01, 1.022891968448e-05, 3.2724e-01, 2.2130e-03, - 2DIAGNOSTIC, 80, -6.380705879951e-01, 8.759554759756e-06, 3.2946e-01, 2.2230e-03, - 2DIAGNOSTIC, 81, -6.380102453212e-01, 6.604832128883e-06, 3.3168e-01, 2.2199e-03, - 2DIAGNOSTIC, 82, -6.380217293831e-01, 4.152092434224e-06, 3.3400e-01, 2.3191e-03, - 2DIAGNOSTIC, 83, -6.380346224966e-01, 1.646498023079e-06, 3.3625e-01, 2.2511e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.766959892103e-01, 1.797693134862e+308, 4.0610e-01, 6.9845e-02, - 2DIAGNOSTIC, 2, -4.771462741323e-01, 1.797693134862e+308, 4.1818e-01, 1.2087e-02, - 2DIAGNOSTIC, 3, -4.776598420580e-01, 1.797693134862e+308, 4.2990e-01, 1.1713e-02, - 2DIAGNOSTIC, 4, -4.780856215216e-01, 1.797693134862e+308, 4.4158e-01, 1.1681e-02, - 2DIAGNOSTIC, 5, -4.786645086949e-01, 1.797693134862e+308, 4.5297e-01, 1.1395e-02, - 2DIAGNOSTIC, 6, -4.790608185823e-01, 1.797693134862e+308, 4.6530e-01, 1.2325e-02, - 2DIAGNOSTIC, 7, -4.801747451251e-01, 1.797693134862e+308, 4.9154e-01, 2.6239e-02, - 2DIAGNOSTIC, 8, -4.801809217733e-01, 1.797693134862e+308, 5.0388e-01, 1.2345e-02, - 2DIAGNOSTIC, 9, -4.802514330797e-01, 1.797693134862e+308, 5.1666e-01, 1.2775e-02, - 2DIAGNOSTIC, 10, -4.803432490960e-01, 5.475162455262e-04, 5.2944e-01, 1.2787e-02, - 2DIAGNOSTIC, 11, -4.804535307570e-01, 4.378995042902e-04, 5.4172e-01, 1.2271e-02, - 2DIAGNOSTIC, 12, -4.805709912362e-01, 3.346141764990e-04, 5.5397e-01, 1.2258e-02, - 2DIAGNOSTIC, 13, -4.807583643061e-01, 2.490915580653e-04, 5.6614e-01, 1.2166e-02, - 2DIAGNOSTIC, 14, -4.812268389781e-01, 1.913962434240e-04, 5.7815e-01, 1.2007e-02, - 2DIAGNOSTIC, 15, -4.815749051625e-01, 1.604135292626e-04, 5.9579e-01, 1.7642e-02, - 2DIAGNOSTIC, 16, -4.816941478856e-01, 1.366159774538e-04, 6.0961e-01, 1.3824e-02, - 2DIAGNOSTIC, 17, -4.817231045188e-01, 1.433240556711e-04, 6.2165e-01, 1.2042e-02, - 2DIAGNOSTIC, 18, -4.817664002093e-01, 1.379061280161e-04, 6.3602e-01, 1.4362e-02, - 2DIAGNOSTIC, 19, -4.820339048079e-01, 1.307209112222e-04, 6.4979e-01, 1.3772e-02, - 2DIAGNOSTIC, 20, -4.821840332934e-01, 1.190304171120e-04, 6.6191e-01, 1.2120e-02, - 2DIAGNOSTIC, 21, -4.825422917050e-01, 1.107979901171e-04, 6.7555e-01, 1.3646e-02, - 2DIAGNOSTIC, 22, -4.827723260788e-01, 1.024808640410e-04, 6.9106e-01, 1.5504e-02, - 2DIAGNOSTIC, 23, -4.828192674044e-01, 9.123572209430e-05, 7.0438e-01, 1.3323e-02, - 2DIAGNOSTIC, 24, -4.829696502163e-01, 8.761179046842e-05, 7.1694e-01, 1.2560e-02, - 2DIAGNOSTIC, 25, -4.834475218063e-01, 9.553849443505e-05, 7.3125e-01, 1.4310e-02, - 2DIAGNOSTIC, 26, -4.838014363683e-01, 1.044133629257e-04, 7.5039e-01, 1.9142e-02, - 2DIAGNOSTIC, 27, -4.839885744953e-01, 1.075751785634e-04, 7.6238e-01, 1.1987e-02, - 2DIAGNOSTIC, 28, -4.843290086047e-01, 1.086655093490e-04, 7.7414e-01, 1.1755e-02, - 2DIAGNOSTIC, 29, -4.844499058668e-01, 1.073880048874e-04, 7.8588e-01, 1.1741e-02, - 2DIAGNOSTIC, 30, -4.844789748615e-01, 9.942024981715e-05, 7.9610e-01, 1.0228e-02, - 2DIAGNOSTIC, 31, -4.845252601057e-01, 9.025448857997e-05, 8.1134e-01, 1.5231e-02, - 2DIAGNOSTIC, 32, -4.845889459119e-01, 7.869466798786e-05, 8.2241e-01, 1.1071e-02, - 2DIAGNOSTIC, 33, -4.846012629763e-01, 6.152326766324e-05, 8.3367e-01, 1.1265e-02, - 2DIAGNOSTIC, 34, -4.846436471704e-01, 4.281568952003e-05, 8.4867e-01, 1.5003e-02, - 2DIAGNOSTIC, 35, -4.846466308026e-01, 2.925198418664e-05, 8.5838e-01, 9.7029e-03, - 2DIAGNOSTIC, 36, -4.846485679891e-01, 1.958592227909e-05, 8.6939e-01, 1.1011e-02, - 2DIAGNOSTIC, 37, -4.846494407626e-01, 1.152827937360e-05, 8.8062e-01, 1.1232e-02, - 2DIAGNOSTIC, 38, -4.846453827625e-01, 8.056190517094e-06, 8.9171e-01, 1.1092e-02, - 2DIAGNOSTIC, 39, -4.846456652644e-01, 5.909883074209e-06, 9.0182e-01, 1.0110e-02, - 2DIAGNOSTIC, 40, -4.846416022240e-01, 3.745536119013e-06, 9.1173e-01, 9.9032e-03, - 2DIAGNOSTIC, 41, -4.846423867316e-01, 2.068816684447e-06, 9.2276e-01, 1.1030e-02, - 2DIAGNOSTIC, 42, -4.846438450376e-01, 1.265293929055e-06, 9.3478e-01, 1.2021e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.055913110246e-01, 1.797693134862e+308, 1.1336e+00, 1.9882e-01, - Elapsed time (stage 0): 1.1593e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.826624679126e-01, 1.797693134862e+308, 3.9220e-02, 3.9220e-02, - 2DIAGNOSTIC, 2, -9.846129857943e-01, 1.797693134862e+308, 4.0446e-02, 1.2262e-03, - 2DIAGNOSTIC, 3, -9.877822264050e-01, 1.797693134862e+308, 4.1729e-02, 1.2829e-03, - 2DIAGNOSTIC, 4, -9.919546699097e-01, 1.797693134862e+308, 4.2990e-02, 1.2610e-03, - 2DIAGNOSTIC, 5, -9.972512221976e-01, 1.797693134862e+308, 4.4448e-02, 1.4579e-03, - 2DIAGNOSTIC, 6, -1.003546539154e+00, 1.797693134862e+308, 4.5957e-02, 1.5090e-03, - 2DIAGNOSTIC, 7, -1.006104682391e+00, 1.797693134862e+308, 4.7258e-02, 1.3011e-03, - 2DIAGNOSTIC, 8, -1.009821832782e+00, 1.797693134862e+308, 4.8561e-02, 1.3030e-03, - 2DIAGNOSTIC, 9, -1.020812134238e+00, 1.797693134862e+308, 5.0048e-02, 1.4870e-03, - 2DIAGNOSTIC, 10, -1.047245375242e+00, 3.383769831372e-03, 5.2001e-02, 1.9529e-03, - 2DIAGNOSTIC, 11, -1.046969918959e+00, 3.616334178904e-03, 5.4146e-02, 2.1451e-03, - 2DIAGNOSTIC, 12, -1.049743404790e+00, 3.606734273978e-03, 5.5847e-02, 1.7011e-03, - 2DIAGNOSTIC, 13, -1.051177528856e+00, 3.379197304953e-03, 5.7370e-02, 1.5230e-03, - 2DIAGNOSTIC, 14, -1.050591475102e+00, 2.944233577163e-03, 5.9096e-02, 1.7262e-03, - 2DIAGNOSTIC, 15, -1.052646727643e+00, 2.428287599348e-03, 6.0863e-02, 1.7669e-03, - 2DIAGNOSTIC, 16, -1.052621994467e+00, 1.865971192077e-03, 6.2574e-02, 1.7109e-03, - 2DIAGNOSTIC, 17, -1.051866281799e+00, 1.236863352686e-03, 6.4128e-02, 1.5540e-03, - 2DIAGNOSTIC, 18, -1.051960532252e+00, 6.246988270238e-04, 6.5643e-02, 1.5152e-03, - 2DIAGNOSTIC, 19, -1.053831701183e+00, 1.978221662250e-04, 6.7163e-02, 1.5199e-03, - 2DIAGNOSTIC, 20, -1.055463413904e+00, 1.842724888637e-04, 6.8731e-02, 1.5678e-03, - 2DIAGNOSTIC, 21, -1.062323705410e+00, 2.402996596968e-04, 7.0713e-02, 1.9820e-03, - 2DIAGNOSTIC, 22, -1.065178118875e+00, 3.374619823058e-04, 7.2724e-02, 2.0111e-03, - 2DIAGNOSTIC, 23, -1.064899318651e+00, 4.091062629044e-04, 7.4721e-02, 1.9970e-03, - 2DIAGNOSTIC, 24, -1.064530950742e+00, 4.260153251399e-04, 7.6311e-02, 1.5898e-03, - 2DIAGNOSTIC, 25, -1.071363926384e+00, 4.990670745143e-04, 7.7779e-02, 1.4679e-03, - 2DIAGNOSTIC, 26, -1.074679833860e+00, 5.512076698878e-04, 7.9264e-02, 1.4851e-03, - 2DIAGNOSTIC, 27, -1.078958445646e+00, 5.827979102772e-04, 8.0985e-02, 1.7211e-03, - 2DIAGNOSTIC, 28, -1.080888692483e+00, 5.779925955492e-04, 8.2885e-02, 1.9000e-03, - 2DIAGNOSTIC, 29, -1.081764153078e+00, 5.460452530791e-04, 8.4383e-02, 1.4980e-03, - 2DIAGNOSTIC, 30, -1.084288797002e+00, 5.005334234615e-04, 8.6061e-02, 1.6780e-03, - 2DIAGNOSTIC, 31, -1.085018992246e+00, 4.755819663836e-04, 8.7990e-02, 1.9290e-03, - 2DIAGNOSTIC, 32, -1.084498440280e+00, 4.275766793946e-04, 8.9549e-02, 1.5590e-03, - 2DIAGNOSTIC, 33, -1.084198626352e+00, 3.387314903140e-04, 9.1270e-02, 1.7209e-03, - 2DIAGNOSTIC, 34, -1.086275839501e+00, 2.360616564566e-04, 9.3925e-02, 2.6550e-03, - 2DIAGNOSTIC, 35, -1.086402996464e+00, 1.700248662818e-04, 9.5410e-02, 1.4851e-03, - 2DIAGNOSTIC, 36, -1.087066977065e+00, 1.209850463174e-04, 9.6951e-02, 1.5411e-03, - 2DIAGNOSTIC, 37, -1.087681904220e+00, 9.918852512874e-05, 9.8436e-02, 1.4849e-03, - 2DIAGNOSTIC, 38, -1.088231367691e+00, 8.692075900699e-05, 1.0017e-01, 1.7331e-03, - 2DIAGNOSTIC, 39, -1.088809967975e+00, 7.645399272158e-05, 1.0161e-01, 1.4460e-03, - 2DIAGNOSTIC, 40, -1.088381737217e+00, 7.316177727494e-05, 1.0313e-01, 1.5111e-03, - 2DIAGNOSTIC, 41, -1.089127253546e+00, 7.322765587528e-05, 1.0509e-01, 1.9619e-03, - 2DIAGNOSTIC, 42, -1.089270580502e+00, 6.398477375332e-05, 1.0681e-01, 1.7240e-03, - 2DIAGNOSTIC, 43, -1.088331333504e+00, 4.100303768806e-05, 1.0853e-01, 1.7152e-03, - 2DIAGNOSTIC, 44, -1.085478519690e+00, 1.078844763073e-05, 1.1004e-01, 1.5121e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.830242199748e-01, 1.797693134862e+308, 1.5729e-01, 4.7255e-02, - 2DIAGNOSTIC, 2, -6.829963596769e-01, 1.797693134862e+308, 1.6007e-01, 2.7790e-03, - 2DIAGNOSTIC, 3, -6.854619251348e-01, 1.797693134862e+308, 1.6275e-01, 2.6741e-03, - 2DIAGNOSTIC, 4, -6.888813663510e-01, 1.797693134862e+308, 1.6535e-01, 2.6050e-03, - 2DIAGNOSTIC, 5, -6.938070102848e-01, 1.797693134862e+308, 1.6778e-01, 2.4259e-03, - 2DIAGNOSTIC, 6, -7.000593948070e-01, 1.797693134862e+308, 1.7001e-01, 2.2299e-03, - 2DIAGNOSTIC, 7, -7.055137942451e-01, 1.797693134862e+308, 1.7223e-01, 2.2230e-03, - 2DIAGNOSTIC, 8, -7.174133498926e-01, 1.797693134862e+308, 1.7479e-01, 2.5620e-03, - 2DIAGNOSTIC, 9, -7.243002930567e-01, 1.797693134862e+308, 1.7770e-01, 2.9089e-03, - 2DIAGNOSTIC, 10, -7.311724483420e-01, 4.682707104229e-03, 1.8025e-01, 2.5518e-03, - 2DIAGNOSTIC, 11, -7.341184230890e-01, 4.693214669689e-03, 1.8306e-01, 2.8090e-03, - 2DIAGNOSTIC, 12, -7.416998929386e-01, 4.531957641941e-03, 1.8590e-01, 2.8410e-03, - 2DIAGNOSTIC, 13, -7.437189147840e-01, 4.118580459630e-03, 1.8853e-01, 2.6300e-03, - 2DIAGNOSTIC, 14, -7.460009373593e-01, 3.553522033939e-03, 1.9152e-01, 2.9819e-03, - 2DIAGNOSTIC, 15, -7.491950079856e-01, 2.958458733366e-03, 1.9469e-01, 3.1760e-03, - 2DIAGNOSTIC, 16, -7.524834831425e-01, 2.405496622992e-03, 1.9757e-01, 2.8751e-03, - 2DIAGNOSTIC, 17, -7.535691095149e-01, 1.844498383040e-03, 2.0044e-01, 2.8760e-03, - 2DIAGNOSTIC, 18, -7.541457911501e-01, 1.450112775259e-03, 2.0337e-01, 2.9230e-03, - 2DIAGNOSTIC, 19, -7.551718241230e-01, 1.127752194163e-03, 2.0592e-01, 2.5520e-03, - 2DIAGNOSTIC, 20, -7.559406134273e-01, 8.835348339560e-04, 2.0880e-01, 2.8832e-03, - 2DIAGNOSTIC, 21, -7.559865001827e-01, 6.330335425770e-04, 2.1244e-01, 3.6340e-03, - 2DIAGNOSTIC, 22, -7.559334907771e-01, 4.812208279279e-04, 2.1543e-01, 2.9938e-03, - 2DIAGNOSTIC, 23, -7.558677122346e-01, 3.318005140614e-04, 2.1840e-01, 2.9709e-03, - 2DIAGNOSTIC, 24, -7.559318020083e-01, 2.015174464557e-04, 2.2099e-01, 2.5859e-03, - 2DIAGNOSTIC, 25, -7.559382817881e-01, 1.115731796666e-04, 2.2359e-01, 2.6059e-03, - 2DIAGNOSTIC, 26, -7.560288926055e-01, 6.870086005533e-05, 2.2609e-01, 2.4979e-03, - 2DIAGNOSTIC, 27, -7.560171895521e-01, 3.829546992848e-05, 2.2864e-01, 2.5468e-03, - 2DIAGNOSTIC, 28, -7.560920442730e-01, 1.541391834829e-05, 2.3161e-01, 2.9781e-03, - 2DIAGNOSTIC, 29, -7.562677638536e-01, 8.525500974188e-06, 2.3485e-01, 3.2392e-03, - 2DIAGNOSTIC, 30, -7.562871243244e-01, 1.146179986547e-05, 2.3806e-01, 3.2020e-03, - 2DIAGNOSTIC, 31, -7.563069091667e-01, 1.407859169478e-05, 2.4244e-01, 4.3859e-03, - 2DIAGNOSTIC, 32, -7.563046132900e-01, 1.468627417905e-05, 2.4549e-01, 3.0510e-03, - 2DIAGNOSTIC, 33, -7.563130577682e-01, 1.327317998452e-05, 2.4856e-01, 3.0680e-03, - 2DIAGNOSTIC, 34, -7.563207569911e-01, 1.156444085898e-05, 2.5113e-01, 2.5730e-03, - 2DIAGNOSTIC, 35, -7.562925755844e-01, 8.679960210849e-06, 2.5365e-01, 2.5120e-03, - 2DIAGNOSTIC, 36, -7.563080302353e-01, 6.407183302949e-06, 2.5623e-01, 2.5799e-03, - 2DIAGNOSTIC, 37, -7.563274173632e-01, 3.812033392957e-06, 2.5876e-01, 2.5361e-03, - 2DIAGNOSTIC, 38, -7.563503046576e-01, 2.010306383946e-06, 2.6153e-01, 2.7699e-03, - 2DIAGNOSTIC, 39, -7.563628506628e-01, 2.040976484648e-06, 2.6399e-01, 2.4559e-03, - 2DIAGNOSTIC, 40, -7.563796708351e-01, 2.303680305949e-06, 2.6653e-01, 2.5408e-03, - 2DIAGNOSTIC, 41, -7.564411118719e-01, 3.171949215165e-06, 2.6916e-01, 2.6319e-03, - 2DIAGNOSTIC, 42, -7.565489421999e-01, 4.711996890405e-06, 2.7212e-01, 2.9619e-03, - 2DIAGNOSTIC, 43, -7.565802591110e-01, 6.131430709197e-06, 2.7466e-01, 2.5361e-03, - 2DIAGNOSTIC, 44, -7.565869562982e-01, 7.117141433512e-06, 2.7720e-01, 2.5442e-03, - 2DIAGNOSTIC, 45, -7.567784043009e-01, 8.850368368639e-06, 2.8007e-01, 2.8629e-03, - 2DIAGNOSTIC, 46, -7.569177697262e-01, 1.096334363520e-05, 2.8261e-01, 2.5430e-03, - 2DIAGNOSTIC, 47, -7.573351307930e-01, 1.552512462374e-05, 2.8580e-01, 3.1919e-03, - 2DIAGNOSTIC, 48, -7.574621207131e-01, 1.960899014574e-05, 2.8989e-01, 4.0851e-03, - 2DIAGNOSTIC, 49, -7.574790476904e-01, 2.197633656241e-05, 2.9228e-01, 2.3971e-03, - 2DIAGNOSTIC, 50, -7.575605520637e-01, 2.298753420593e-05, 2.9462e-01, 2.3332e-03, - 2DIAGNOSTIC, 51, -7.575751343137e-01, 2.233144382618e-05, 2.9723e-01, 2.6100e-03, - 2DIAGNOSTIC, 52, -7.575943718538e-01, 2.051737454969e-05, 2.9954e-01, 2.3110e-03, - 2DIAGNOSTIC, 53, -7.576095268736e-01, 1.721025560759e-05, 3.0185e-01, 2.3088e-03, - 2DIAGNOSTIC, 54, -7.576641382058e-01, 1.288164892092e-05, 3.0418e-01, 2.3310e-03, - 2DIAGNOSTIC, 55, -7.579342190458e-01, 1.073840681546e-05, 3.0706e-01, 2.8880e-03, - 2DIAGNOSTIC, 56, -7.579016363788e-01, 8.305436593515e-06, 3.0938e-01, 2.3119e-03, - 2DIAGNOSTIC, 57, -7.579144743565e-01, 8.110869757473e-06, 3.1169e-01, 2.3088e-03, - 2DIAGNOSTIC, 58, -7.581472509574e-01, 9.587239535747e-06, 3.1428e-01, 2.5940e-03, - 2DIAGNOSTIC, 59, -7.584063076693e-01, 1.185649612390e-05, 3.1715e-01, 2.8679e-03, - 2DIAGNOSTIC, 60, -7.583541345819e-01, 1.309073784768e-05, 3.1977e-01, 2.6221e-03, - 2DIAGNOSTIC, 61, -7.584947680885e-01, 1.409788434936e-05, 3.2298e-01, 3.2151e-03, - 2DIAGNOSTIC, 62, -7.585049283059e-01, 1.396694339834e-05, 3.2614e-01, 3.1581e-03, - 2DIAGNOSTIC, 63, -7.585542155838e-01, 1.291594259535e-05, 3.2935e-01, 3.2039e-03, - 2DIAGNOSTIC, 64, -7.585460899400e-01, 1.090952946193e-05, 3.3306e-01, 3.7110e-03, - 2DIAGNOSTIC, 65, -7.585573869773e-01, 9.641396449146e-06, 3.3544e-01, 2.3820e-03, - 2DIAGNOSTIC, 66, -7.584857781241e-01, 6.959043994535e-06, 3.3783e-01, 2.3921e-03, - 2DIAGNOSTIC, 67, -7.584184663510e-01, 3.407180945329e-06, 3.4056e-01, 2.7239e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.660275406019e-01, 1.797693134862e+308, 4.0347e-01, 6.2912e-02, - 2DIAGNOSTIC, 2, -5.663255662963e-01, 1.797693134862e+308, 4.1486e-01, 1.1396e-02, - 2DIAGNOSTIC, 3, -5.668045170129e-01, 1.797693134862e+308, 4.2639e-01, 1.1531e-02, - 2DIAGNOSTIC, 4, -5.674530244930e-01, 1.797693134862e+308, 4.3808e-01, 1.1682e-02, - 2DIAGNOSTIC, 5, -5.683040323263e-01, 1.797693134862e+308, 4.4988e-01, 1.1803e-02, - 2DIAGNOSTIC, 6, -5.692673443545e-01, 1.797693134862e+308, 4.6141e-01, 1.1529e-02, - 2DIAGNOSTIC, 7, -5.700202725965e-01, 1.797693134862e+308, 4.7794e-01, 1.6530e-02, - 2DIAGNOSTIC, 8, -5.700841220862e-01, 1.797693134862e+308, 4.8982e-01, 1.1885e-02, - 2DIAGNOSTIC, 9, -5.702452941924e-01, 1.797693134862e+308, 5.0101e-01, 1.1186e-02, - 2DIAGNOSTIC, 10, -5.704604693796e-01, 5.789783626294e-04, 5.1234e-01, 1.1326e-02, - 2DIAGNOSTIC, 11, -5.706132438412e-01, 4.752813043937e-04, 5.2948e-01, 1.7145e-02, - 2DIAGNOSTIC, 12, -5.706272367434e-01, 3.592446453058e-04, 5.4236e-01, 1.2877e-02, - 2DIAGNOSTIC, 13, -5.706275923938e-01, 2.476387604496e-04, 5.5498e-01, 1.2619e-02, - 2DIAGNOSTIC, 14, -5.706328364634e-01, 1.530158747595e-04, 5.6768e-01, 1.2703e-02, - 2DIAGNOSTIC, 15, -5.706424182665e-01, 8.518828521956e-05, 5.8022e-01, 1.2541e-02, - 2DIAGNOSTIC, 16, -5.706527928504e-01, 4.794271233444e-05, 5.9289e-01, 1.2670e-02, - 2DIAGNOSTIC, 17, -5.706568419539e-01, 3.316541920304e-05, 6.0546e-01, 1.2568e-02, - 2DIAGNOSTIC, 18, -5.706553634593e-01, 1.888795587644e-05, 6.1663e-01, 1.1167e-02, - 2DIAGNOSTIC, 19, -5.706578052616e-01, 8.723571083141e-06, 6.2910e-01, 1.2475e-02, - 2DIAGNOSTIC, 20, -5.706599297622e-01, 4.233402268995e-06, 6.4167e-01, 1.2571e-02, - 2DIAGNOSTIC, 21, -5.706581297095e-01, 3.498700168247e-06, 6.5480e-01, 1.3128e-02, - 2DIAGNOSTIC, 22, -5.706526201115e-01, 2.843415048366e-06, 6.6785e-01, 1.3054e-02, - 2DIAGNOSTIC, 23, -5.706542316912e-01, 2.163985461816e-06, 6.8601e-01, 1.8157e-02, - 2DIAGNOSTIC, 24, -5.706511629039e-01, 1.507901933491e-06, 6.9916e-01, 1.3147e-02, - 2DIAGNOSTIC, 25, -5.706489783848e-01, 1.029179596775e-06, 7.1216e-01, 1.3001e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.726696725468e-01, 1.797693134862e+308, 8.9621e-01, 1.8405e-01, - Elapsed time (stage 1): 9.1882e-01 - - -Total elapsed time: 2.0792e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:39:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 31 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 66 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 78.41% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 78.41% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[ 9438 7703 3298 26289 2286 2296 4752 564 2682 406 188 533 - 0 624 259 183 0 0 0 0 0 0 0 0 - 0 0 0 0 0 0 0] -[98224 52255 34677 25110 28054 21620 24539 14482 3957 8430 6937 1984 - 2542 2035 1824 2135 220 1191 1352 1457 664 531 426 0 - 0 601 443 763 245 415 188] -[ 193 3179 0 170 615 0 0 0 3340 33091 0 260 - 170 0 8972 0 4119 1934 0 11735 872 0 166 0 - 0 7403 0 1348 0 0 0] -[ 904 56154 198 1489 0 5529 2837 1001 48112 984 0 2888 - 1487 1445 4438 1308 0 19308 3259 200 5195 1227 1950 1713 - 5100 52766 597 17895 1063 1149 4032] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:48:47 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:48:51 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:34 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:34 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:34 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:44 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:48 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC002 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:52:59 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:53:24 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:55:09 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:55:11 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:56:27 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:56:28 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5645a3e7cd20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.2585, 106.949, -144.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5645a3cf3730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff23b8e5010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5645a3e80020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 46.8152, -138.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5645a3e860c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff238226010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5645a3e96840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.2585, 106.949, -144.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5645a3e82890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff233552010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5645a3e9a3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 46.8152, -138.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5645a3e89130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff22fe93010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.000455269161e-01, 1.797693134862e+308, 2.4102e-01, 2.4102e-01, - 2DIAGNOSTIC, 2, -4.013971536240e-01, 1.797693134862e+308, 2.4238e-01, 1.3590e-03, - 2DIAGNOSTIC, 3, -4.035865175024e-01, 1.797693134862e+308, 2.4373e-01, 1.3590e-03, - 2DIAGNOSTIC, 4, -4.112533745259e-01, 1.797693134862e+308, 2.4513e-01, 1.3928e-03, - 2DIAGNOSTIC, 5, -4.157652036288e-01, 1.797693134862e+308, 2.4649e-01, 1.3590e-03, - 2DIAGNOSTIC, 6, -4.384542768240e-01, 1.797693134862e+308, 2.4783e-01, 1.3399e-03, - 2DIAGNOSTIC, 7, -5.139385628899e-01, 1.797693134862e+308, 2.4929e-01, 1.4651e-03, - 2DIAGNOSTIC, 8, -5.268374372039e-01, 1.797693134862e+308, 2.5104e-01, 1.7478e-03, - 2DIAGNOSTIC, 9, -5.350664555802e-01, 1.797693134862e+308, 2.5400e-01, 2.9659e-03, - 2DIAGNOSTIC, 10, -5.379574940401e-01, 2.436202066964e-02, 2.6042e-01, 6.4170e-03, - 2DIAGNOSTIC, 11, -5.379574878813e-01, 2.248592287390e-02, 2.6221e-01, 1.7869e-03, - 2DIAGNOSTIC, 12, -5.379575910137e-01, 1.898720817894e-02, 2.6396e-01, 1.7512e-03, - 2DIAGNOSTIC, 13, -5.379577653845e-01, 1.448757463187e-02, 2.6563e-01, 1.6670e-03, - 2DIAGNOSTIC, 14, -5.379580601725e-01, 9.776112569222e-03, 2.6730e-01, 1.6770e-03, - 2DIAGNOSTIC, 15, -5.379585584536e-01, 5.067771551716e-03, 2.6907e-01, 1.7619e-03, - 2DIAGNOSTIC, 16, -5.379594004656e-01, 1.303399000307e-03, 2.7072e-01, 1.6549e-03, - 2DIAGNOSTIC, 17, -5.379608226563e-01, 4.667049881983e-04, 2.7240e-01, 1.6789e-03, - 2DIAGNOSTIC, 18, -5.379632228800e-01, 9.470711405095e-05, 2.7405e-01, 1.6470e-03, - 2DIAGNOSTIC, 19, -5.379672682688e-01, 2.355142187375e-06, 2.7575e-01, 1.7021e-03, - 2DIAGNOSTIC, 20, -5.379740708957e-01, 2.581640467680e-06, 2.7743e-01, 1.6840e-03, - 2DIAGNOSTIC, 21, -5.379854657517e-01, 3.009567577379e-06, 2.7905e-01, 1.6210e-03, - 2DIAGNOSTIC, 22, -5.380044273311e-01, 3.752807675068e-06, 2.8072e-01, 1.6680e-03, - 2DIAGNOSTIC, 23, -5.380356635927e-01, 4.984099541118e-06, 2.8235e-01, 1.6279e-03, - 2DIAGNOSTIC, 24, -5.380862585957e-01, 6.958790343591e-06, 2.8399e-01, 1.6410e-03, - 2DIAGNOSTIC, 25, -5.381656437798e-01, 1.001988137562e-05, 2.8561e-01, 1.6181e-03, - 2DIAGNOSTIC, 26, -5.382826018643e-01, 1.452574606250e-05, 2.8724e-01, 1.6270e-03, - 2DIAGNOSTIC, 27, -5.384383744924e-01, 2.064808732702e-05, 2.8887e-01, 1.6351e-03, - 2DIAGNOSTIC, 28, -5.382345061496e-01, 2.042241486472e-05, 2.9052e-01, 1.6479e-03, - 2DIAGNOSTIC, 29, -5.383770592134e-01, 2.137966088574e-05, 2.9215e-01, 1.6279e-03, - 2DIAGNOSTIC, 30, -5.384664246494e-01, 2.203905140923e-05, 2.9379e-01, 1.6398e-03, - 2DIAGNOSTIC, 31, -5.389494769506e-01, 2.940826370455e-05, 2.9538e-01, 1.5900e-03, - 2DIAGNOSTIC, 32, -5.390521062329e-01, 3.551496948335e-05, 2.9701e-01, 1.6370e-03, - 2DIAGNOSTIC, 33, -5.391254608820e-01, 3.985622236746e-05, 2.9888e-01, 1.8661e-03, - 2DIAGNOSTIC, 34, -5.391500169622e-01, 4.157664162953e-05, 3.0094e-01, 2.0621e-03, - 2DIAGNOSTIC, 35, -5.391689161074e-01, 4.078285734260e-05, 3.0256e-01, 1.6191e-03, - 2DIAGNOSTIC, 36, -5.391879554480e-01, 3.814068527070e-05, 3.0446e-01, 1.9019e-03, - 2DIAGNOSTIC, 37, -5.392256229046e-01, 3.506361649275e-05, 3.0684e-01, 2.3768e-03, - 2DIAGNOSTIC, 38, -5.392533696080e-01, 2.639654109887e-05, 3.0857e-01, 1.7259e-03, - 2DIAGNOSTIC, 39, -5.392641051416e-01, 1.797749374084e-05, 3.1025e-01, 1.6801e-03, - 2DIAGNOSTIC, 40, -5.392759834757e-01, 9.597664046391e-06, 3.1241e-01, 2.1689e-03, - 2DIAGNOSTIC, 41, -5.392863179530e-01, 7.370916843229e-06, 3.1407e-01, 1.6549e-03, - 2DIAGNOSTIC, 42, -5.393052793632e-01, 6.182199005795e-06, 3.1575e-01, 1.6780e-03, - 2DIAGNOSTIC, 43, -5.391613548626e-01, 3.625480179344e-06, 3.1820e-01, 2.4569e-03, - 2DIAGNOSTIC, 44, -5.391680204054e-01, 1.359436424892e-06, 3.1995e-01, 1.7438e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.123941443387e-01, 1.797693134862e+308, 5.5448e-01, 2.3454e-01, - 2DIAGNOSTIC, 2, -4.118459644667e-01, 1.797693134862e+308, 5.5692e-01, 2.4321e-03, - 2DIAGNOSTIC, 3, -4.131829135500e-01, 1.797693134862e+308, 5.5930e-01, 2.3830e-03, - 2DIAGNOSTIC, 4, -4.170400855746e-01, 1.797693134862e+308, 5.6165e-01, 2.3549e-03, - 2DIAGNOSTIC, 5, -4.221975914450e-01, 1.797693134862e+308, 5.6446e-01, 2.8059e-03, - 2DIAGNOSTIC, 6, -4.293807897140e-01, 1.797693134862e+308, 5.6789e-01, 3.4349e-03, - 2DIAGNOSTIC, 7, -4.297597247405e-01, 1.797693134862e+308, 5.7030e-01, 2.4068e-03, - 2DIAGNOSTIC, 8, -4.301921701028e-01, 1.797693134862e+308, 5.7232e-01, 2.0189e-03, - 2DIAGNOSTIC, 9, -4.304250442584e-01, 1.797693134862e+308, 5.7434e-01, 2.0189e-03, - 2DIAGNOSTIC, 10, -4.309190263369e-01, 3.621814662373e-03, 5.7690e-01, 2.5570e-03, - 2DIAGNOSTIC, 11, -4.315403693143e-01, 2.954356249786e-03, 5.7996e-01, 3.0649e-03, - 2DIAGNOSTIC, 12, -4.315511931213e-01, 2.108588576005e-03, 5.8416e-01, 4.1971e-03, - 2DIAGNOSTIC, 13, -4.322067428660e-01, 1.311348688701e-03, 5.8751e-01, 3.3560e-03, - 2DIAGNOSTIC, 14, -4.324302119540e-01, 7.024455044371e-04, 5.8987e-01, 2.3601e-03, - 2DIAGNOSTIC, 15, -4.336839442254e-01, 3.882391240210e-04, 5.9246e-01, 2.5880e-03, - 2DIAGNOSTIC, 16, -4.354406735296e-01, 4.493884756946e-04, 5.9498e-01, 2.5182e-03, - 2DIAGNOSTIC, 17, -4.366813169736e-01, 5.238932136463e-04, 5.9796e-01, 2.9788e-03, - 2DIAGNOSTIC, 18, -4.367451906058e-01, 5.602358625093e-04, 6.0018e-01, 2.2161e-03, - 2DIAGNOSTIC, 19, -4.367820887786e-01, 5.512572283847e-04, 6.0238e-01, 2.2080e-03, - 2DIAGNOSTIC, 20, -4.368626325993e-01, 5.107048498761e-04, 6.0608e-01, 3.7010e-03, - 2DIAGNOSTIC, 21, -4.370068939158e-01, 4.499501715307e-04, 6.0826e-01, 2.1801e-03, - 2DIAGNOSTIC, 22, -4.370301635932e-01, 3.532288732722e-04, 6.1045e-01, 2.1899e-03, - 2DIAGNOSTIC, 23, -4.370672609941e-01, 2.530697633294e-04, 6.1270e-01, 2.2461e-03, - 2DIAGNOSTIC, 24, -4.371619745235e-01, 1.467442728911e-04, 6.1494e-01, 2.2421e-03, - 2DIAGNOSTIC, 25, -4.371773429828e-01, 6.793672870244e-05, 6.1718e-01, 2.2349e-03, - 2DIAGNOSTIC, 26, -4.371984120655e-01, 3.325138551328e-05, 6.2032e-01, 3.1462e-03, - 2DIAGNOSTIC, 27, -4.372043837928e-01, 2.862129013984e-05, 6.2257e-01, 2.2459e-03, - 2DIAGNOSTIC, 28, -4.372934617850e-01, 2.537898331387e-05, 6.2483e-01, 2.2600e-03, - 2DIAGNOSTIC, 29, -4.373889797672e-01, 2.299207523787e-05, 6.2896e-01, 4.1280e-03, - 2DIAGNOSTIC, 30, -4.373167851288e-01, 1.876120222823e-05, 6.3152e-01, 2.5649e-03, - 2DIAGNOSTIC, 31, -4.373169162787e-01, 1.631844720291e-05, 6.3376e-01, 2.2409e-03, - 2DIAGNOSTIC, 32, -4.373172976532e-01, 1.307979953891e-05, 6.3599e-01, 2.2228e-03, - 2DIAGNOSTIC, 33, -4.373189570517e-01, 9.563043770609e-06, 6.3818e-01, 2.1980e-03, - 2DIAGNOSTIC, 34, -4.373962480767e-01, 8.732952571838e-06, 6.4041e-01, 2.2299e-03, - 2DIAGNOSTIC, 35, -4.373330979512e-01, 6.306169445771e-06, 6.4262e-01, 2.2101e-03, - 2DIAGNOSTIC, 36, -4.373471857164e-01, 4.245767440077e-06, 6.4484e-01, 2.2130e-03, - 2DIAGNOSTIC, 37, -4.373712249884e-01, 2.467616214794e-06, 6.4763e-01, 2.7881e-03, - 2DIAGNOSTIC, 38, -4.375667290690e-01, 5.456241983011e-06, 6.5106e-01, 3.4339e-03, - 2DIAGNOSTIC, 39, -4.376606427258e-01, 1.097166751101e-05, 6.5388e-01, 2.8200e-03, - 2DIAGNOSTIC, 40, -4.375936467845e-01, 1.296986656146e-05, 6.5609e-01, 2.2142e-03, - 2DIAGNOSTIC, 41, -4.376503552689e-01, 1.473729352169e-05, 6.5903e-01, 2.9368e-03, - 2DIAGNOSTIC, 42, -4.376642985824e-01, 1.527646833782e-05, 6.6132e-01, 2.2898e-03, - 2DIAGNOSTIC, 43, -4.376675060972e-01, 1.436715261983e-05, 6.6365e-01, 2.3260e-03, - 2DIAGNOSTIC, 44, -4.377588341896e-01, 1.473056819098e-05, 6.6627e-01, 2.6240e-03, - 2DIAGNOSTIC, 45, -4.379109897099e-01, 1.505442153458e-05, 6.6930e-01, 3.0322e-03, - 2DIAGNOSTIC, 46, -4.385075428071e-01, 2.268225693571e-05, 6.7217e-01, 2.8660e-03, - 2DIAGNOSTIC, 47, -4.388535244166e-01, 3.276084354500e-05, 6.7475e-01, 2.5821e-03, - 2DIAGNOSTIC, 48, -4.392893512600e-01, 4.791472105000e-05, 6.7801e-01, 3.2609e-03, - 2DIAGNOSTIC, 49, -4.399419326123e-01, 6.792122556556e-05, 6.8060e-01, 2.5890e-03, - 2DIAGNOSTIC, 50, -4.400471827464e-01, 8.098330748737e-05, 6.8297e-01, 2.3720e-03, - 2DIAGNOSTIC, 51, -4.404532142905e-01, 9.177628434783e-05, 6.8504e-01, 2.0709e-03, - 2DIAGNOSTIC, 52, -4.407801050342e-01, 9.761990910999e-05, 6.8741e-01, 2.3711e-03, - 2DIAGNOSTIC, 53, -4.412935676998e-01, 1.002479736856e-04, 6.8982e-01, 2.4099e-03, - 2DIAGNOSTIC, 54, -4.421158829791e-01, 1.041703280876e-04, 6.9199e-01, 2.1641e-03, - 2DIAGNOSTIC, 55, -4.430781900409e-01, 1.109662520700e-04, 6.9453e-01, 2.5380e-03, - 2DIAGNOSTIC, 56, -4.502560714780e-01, 1.974454050725e-04, 6.9709e-01, 2.5661e-03, - 2DIAGNOSTIC, 57, -4.629409013117e-01, 4.087316710158e-04, 6.9968e-01, 2.5868e-03, - 2DIAGNOSTIC, 58, -4.811208509907e-01, 7.785580473989e-04, 7.0196e-01, 2.2771e-03, - 2DIAGNOSTIC, 59, -5.173288572233e-01, 1.461222344167e-03, 7.0477e-01, 2.8179e-03, - 2DIAGNOSTIC, 60, -5.321625824877e-01, 2.129923654202e-03, 7.0727e-01, 2.4931e-03, - 2DIAGNOSTIC, 61, -5.323438042133e-01, 2.575730394612e-03, 7.0944e-01, 2.1691e-03, - 2DIAGNOSTIC, 62, -5.644952072035e-01, 3.095062911035e-03, 7.1195e-01, 2.5160e-03, - 2DIAGNOSTIC, 63, -5.966021510924e-01, 3.612890244519e-03, 7.1503e-01, 3.0770e-03, - 2DIAGNOSTIC, 64, -6.044826935010e-01, 3.838572318280e-03, 7.1719e-01, 2.1570e-03, - 2DIAGNOSTIC, 65, -6.214888698677e-01, 3.864842376403e-03, 7.1935e-01, 2.1641e-03, - 2DIAGNOSTIC, 66, -6.451643692117e-01, 3.813975448122e-03, 7.2304e-01, 3.6910e-03, - 2DIAGNOSTIC, 67, -6.492749130044e-01, 3.547920505756e-03, 7.2512e-01, 2.0759e-03, - 2DIAGNOSTIC, 68, -6.568386264803e-01, 3.176727571509e-03, 7.2723e-01, 2.1081e-03, - 2DIAGNOSTIC, 69, -6.707610183484e-01, 2.962175294256e-03, 7.2990e-01, 2.6739e-03, - 2DIAGNOSTIC, 70, -6.742469884620e-01, 2.634614369116e-03, 7.3201e-01, 2.1150e-03, - 2DIAGNOSTIC, 71, -6.811264610928e-01, 2.121913790318e-03, 7.3471e-01, 2.6989e-03, - 2DIAGNOSTIC, 72, -6.890427228646e-01, 1.756103285501e-03, 7.3681e-01, 2.0919e-03, - 2DIAGNOSTIC, 73, -6.938941115440e-01, 1.540347406877e-03, 7.3894e-01, 2.1338e-03, - 2DIAGNOSTIC, 74, -7.100490434352e-01, 1.375389112217e-03, 7.4196e-01, 3.0220e-03, - 2DIAGNOSTIC, 75, -7.174278133089e-01, 1.269831898755e-03, 7.4407e-01, 2.1110e-03, - 2DIAGNOSTIC, 76, -7.232040399724e-01, 1.274858659325e-03, 7.4760e-01, 3.5250e-03, - 2DIAGNOSTIC, 77, -7.242777852050e-01, 1.196833308798e-03, 7.4964e-01, 2.0471e-03, - 2DIAGNOSTIC, 78, -7.258624850520e-01, 1.073011939193e-03, 7.5201e-01, 2.3680e-03, - 2DIAGNOSTIC, 79, -7.264511209599e-01, 9.556462992873e-04, 7.5415e-01, 2.1350e-03, - 2DIAGNOSTIC, 80, -7.272148003415e-01, 7.797823392963e-04, 7.5619e-01, 2.0380e-03, - 2DIAGNOSTIC, 81, -7.284442491103e-01, 5.922431549889e-04, 7.5823e-01, 2.0468e-03, - 2DIAGNOSTIC, 82, -7.317145944715e-01, 4.325170207637e-04, 7.6037e-01, 2.1400e-03, - 2DIAGNOSTIC, 83, -7.507243558948e-01, 3.960268903630e-04, 7.6315e-01, 2.7800e-03, - 2DIAGNOSTIC, 84, -7.540014527707e-01, 4.480941952594e-04, 7.6630e-01, 3.1478e-03, - 2DIAGNOSTIC, 85, -7.541107007682e-01, 5.046383054697e-04, 7.6884e-01, 2.5442e-03, - 2DIAGNOSTIC, 86, -7.537853521222e-01, 5.478533803880e-04, 7.7106e-01, 2.2180e-03, - 2DIAGNOSTIC, 87, -7.536498173731e-01, 5.423292524899e-04, 7.7325e-01, 2.1870e-03, - 2DIAGNOSTIC, 88, -7.537205852761e-01, 4.931073477965e-04, 7.7570e-01, 2.4509e-03, - 2DIAGNOSTIC, 89, -7.538796614590e-01, 4.021101665253e-04, 7.7784e-01, 2.1381e-03, - 2DIAGNOSTIC, 90, -7.551380334385e-01, 2.893202668345e-04, 7.8126e-01, 3.4239e-03, - 2DIAGNOSTIC, 91, -7.555355199201e-01, 1.628822065103e-04, 7.8408e-01, 2.8169e-03, - 2DIAGNOSTIC, 92, -7.557719841151e-01, 4.231605496584e-05, 7.8654e-01, 2.4631e-03, - 2DIAGNOSTIC, 93, -7.554287713233e-01, 2.823990489925e-05, 7.8870e-01, 2.1570e-03, - 2DIAGNOSTIC, 94, -7.554522732780e-01, 3.061249510602e-05, 7.9087e-01, 2.1758e-03, - 2DIAGNOSTIC, 95, -7.556645216880e-01, 3.171791371692e-05, 7.9303e-01, 2.1520e-03, - 2DIAGNOSTIC, 96, -7.557195226105e-01, 2.820344151932e-05, 7.9547e-01, 2.4390e-03, - 2DIAGNOSTIC, 97, -7.556323034023e-01, 2.100473143075e-05, 7.9832e-01, 2.8560e-03, - 2DIAGNOSTIC, 98, -7.556016263780e-01, 1.239559787790e-05, 8.0199e-01, 3.6709e-03, - 2DIAGNOSTIC, 99, -7.556378828643e-01, 3.763840209588e-06, 8.0567e-01, 3.6771e-03, - 2DIAGNOSTIC, 100, -7.558138576948e-01, 2.389989032339e-06, 8.1425e-01, 8.5800e-03, - 2DIAGNOSTIC, 101, -7.558138373024e-01, 2.813889737633e-06, 8.1647e-01, 2.2180e-03, - 2DIAGNOSTIC, 102, -7.558138601108e-01, 4.280976284011e-06, 8.1868e-01, 2.2070e-03, - 2DIAGNOSTIC, 103, -7.558138986752e-01, 3.657843534453e-06, 8.2093e-01, 2.2581e-03, - 2DIAGNOSTIC, 104, -7.558139638479e-01, 2.815193022134e-06, 8.2329e-01, 2.3611e-03, - 2DIAGNOSTIC, 105, -7.558140739424e-01, 2.763882928082e-06, 8.2534e-01, 2.0430e-03, - 2DIAGNOSTIC, 106, -7.558142597920e-01, 2.761171215485e-06, 8.2764e-01, 2.3019e-03, - 2DIAGNOSTIC, 107, -7.558145731523e-01, 2.139342717025e-06, 8.3006e-01, 2.4192e-03, - 2DIAGNOSTIC, 108, -7.558151004500e-01, 1.229062848445e-06, 8.3225e-01, 2.1958e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.210796212391e-01, 1.797693134862e+308, 1.0899e+00, 2.5768e-01, - 2DIAGNOSTIC, 2, -6.222736381663e-01, 1.797693134862e+308, 1.1014e+00, 1.1512e-02, - 2DIAGNOSTIC, 3, -6.241449296557e-01, 1.797693134862e+308, 1.1130e+00, 1.1561e-02, - 2DIAGNOSTIC, 4, -6.257272935761e-01, 1.797693134862e+308, 1.1247e+00, 1.1657e-02, - 2DIAGNOSTIC, 5, -6.269379364637e-01, 1.797693134862e+308, 1.1362e+00, 1.1560e-02, - 2DIAGNOSTIC, 6, -6.274891611594e-01, 1.797693134862e+308, 1.1498e+00, 1.3587e-02, - 2DIAGNOSTIC, 7, -6.291009371323e-01, 1.797693134862e+308, 1.1728e+00, 2.3017e-02, - 2DIAGNOSTIC, 8, -6.291371852805e-01, 1.797693134862e+308, 1.1868e+00, 1.3994e-02, - 2DIAGNOSTIC, 9, -6.291897686298e-01, 1.797693134862e+308, 1.2011e+00, 1.4276e-02, - 2DIAGNOSTIC, 10, -6.292478084160e-01, 8.825027477341e-04, 1.2156e+00, 1.4463e-02, - 2DIAGNOSTIC, 11, -6.292980307973e-01, 6.298257590183e-04, 1.2294e+00, 1.3864e-02, - 2DIAGNOSTIC, 12, -6.293032257745e-01, 4.068676360206e-04, 1.2430e+00, 1.3571e-02, - 2DIAGNOSTIC, 13, -6.293055721528e-01, 2.462159748136e-04, 1.2554e+00, 1.2365e-02, - 2DIAGNOSTIC, 14, -6.293121807486e-01, 1.378094672504e-04, 1.2678e+00, 1.2476e-02, - 2DIAGNOSTIC, 15, -6.293152824381e-01, 6.827024509888e-05, 1.2802e+00, 1.2372e-02, - 2DIAGNOSTIC, 16, -6.292956101093e-01, 1.512923305079e-05, 1.2944e+00, 1.4165e-02, - 2DIAGNOSTIC, 17, -6.293729667527e-01, 1.206800875119e-05, 1.3068e+00, 1.2453e-02, - 2DIAGNOSTIC, 18, -6.294143271323e-01, 1.029633964249e-05, 1.3192e+00, 1.2333e-02, - 2DIAGNOSTIC, 19, -6.295010846563e-01, 1.120166066133e-05, 1.3314e+00, 1.2237e-02, - 2DIAGNOSTIC, 20, -6.296843472921e-01, 1.654539722029e-05, 1.3436e+00, 1.2213e-02, - 2DIAGNOSTIC, 21, -6.298896731353e-01, 2.541742256607e-05, 1.3567e+00, 1.3070e-02, - 2DIAGNOSTIC, 22, -6.302468763770e-01, 3.862858406162e-05, 1.3711e+00, 1.4378e-02, - 2DIAGNOSTIC, 23, -6.313178833673e-01, 6.818801103881e-05, 1.3966e+00, 2.5519e-02, - 2DIAGNOSTIC, 24, -6.313256650682e-01, 8.882429321433e-05, 1.4134e+00, 1.6784e-02, - 2DIAGNOSTIC, 25, -6.312967452321e-01, 9.941917605594e-05, 1.4282e+00, 1.4809e-02, - 2DIAGNOSTIC, 26, -6.312647325759e-01, 9.928673753869e-05, 1.4423e+00, 1.4145e-02, - 2DIAGNOSTIC, 27, -6.312679787560e-01, 9.115675622762e-05, 1.4545e+00, 1.2186e-02, - 2DIAGNOSTIC, 28, -6.312550568989e-01, 7.530419350640e-05, 1.4667e+00, 1.2231e-02, - 2DIAGNOSTIC, 29, -6.312612827474e-01, 5.497744738760e-05, 1.4810e+00, 1.4230e-02, - 2DIAGNOSTIC, 30, -6.312646093503e-01, 3.397150393392e-05, 1.4931e+00, 1.2154e-02, - 2DIAGNOSTIC, 31, -6.312506958084e-01, 1.404751441375e-05, 1.5053e+00, 1.2206e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.288140078022e-01, 1.797693134862e+308, 1.9280e+00, 4.2266e-01, - 2DIAGNOSTIC, 2, -5.293444387797e-01, 1.797693134862e+308, 2.0051e+00, 7.7084e-02, - 2DIAGNOSTIC, 3, -5.296546242989e-01, 1.797693134862e+308, 2.0867e+00, 8.1585e-02, - 2DIAGNOSTIC, 4, -5.299933029939e-01, 1.797693134862e+308, 2.1717e+00, 8.5070e-02, - 2DIAGNOSTIC, 5, -5.300952789935e-01, 1.797693134862e+308, 2.2466e+00, 7.4834e-02, - 2DIAGNOSTIC, 6, -5.302777766673e-01, 1.797693134862e+308, 2.3324e+00, 8.5852e-02, - 2DIAGNOSTIC, 7, -5.306782044801e-01, 1.797693134862e+308, 2.4416e+00, 1.0914e-01, - 2DIAGNOSTIC, 8, -5.307574710617e-01, 1.797693134862e+308, 2.5154e+00, 7.3832e-02, - 2DIAGNOSTIC, 9, -5.308436276516e-01, 1.797693134862e+308, 2.5886e+00, 7.3206e-02, - 2DIAGNOSTIC, 10, -5.310574756279e-01, 2.539319323806e-04, 2.7145e+00, 1.2592e-01, - 2DIAGNOSTIC, 11, -5.310536383486e-01, 1.932756223855e-04, 2.8467e+00, 1.3222e-01, - 2DIAGNOSTIC, 12, -5.310546163423e-01, 1.491050654282e-04, 2.9535e+00, 1.0680e-01, - 2DIAGNOSTIC, 13, -5.310534117871e-01, 1.110369415713e-04, 3.0335e+00, 8.0000e-02, - 2DIAGNOSTIC, 14, -5.310525625861e-01, 8.160566043877e-05, 3.1112e+00, 7.7663e-02, - 2DIAGNOSTIC, 15, -5.310522908951e-01, 5.238668343797e-05, 3.1991e+00, 8.7870e-02, - 2DIAGNOSTIC, 16, -5.310502039298e-01, 2.792486121325e-05, 3.2744e+00, 7.5300e-02, - 2DIAGNOSTIC, 17, -5.310561331850e-01, 1.683420993299e-05, 3.3857e+00, 1.1132e-01, - 2DIAGNOSTIC, 18, -5.310555041871e-01, 7.931266387519e-06, 3.4841e+00, 9.8423e-02, - 2DIAGNOSTIC, 19, -5.310545700962e-01, 1.626301685265e-06, 3.5787e+00, 9.4552e-02, - 2DIAGNOSTIC, 20, -5.310518895865e-01, 1.618678822056e-06, 3.6881e+00, 1.0948e-01, - 2DIAGNOSTIC, 21, -5.310505103435e-01, 1.476556111553e-06, 3.7850e+00, 9.6881e-02, - 2DIAGNOSTIC, 22, -5.310491999613e-01, 1.341055999880e-06, 3.8812e+00, 9.6208e-02, - 2DIAGNOSTIC, 23, -5.310478887263e-01, 1.167655740125e-06, 3.9632e+00, 8.1935e-02, - 2DIAGNOSTIC, 24, -5.310486204243e-01, 1.028760198904e-06, 4.0458e+00, 8.2663e-02, - Elapsed time (stage 0): 4.1974e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.876617927597e-01, 1.797693134862e+308, 2.0667e-01, 2.0667e-01, - 2DIAGNOSTIC, 2, -8.909972977935e-01, 1.797693134862e+308, 2.0787e-01, 1.2009e-03, - 2DIAGNOSTIC, 3, -8.940908816840e-01, 1.797693134862e+308, 2.0913e-01, 1.2538e-03, - 2DIAGNOSTIC, 4, -8.997782886688e-01, 1.797693134862e+308, 2.1033e-01, 1.2000e-03, - 2DIAGNOSTIC, 5, -9.074361303463e-01, 1.797693134862e+308, 2.1148e-01, 1.1489e-03, - 2DIAGNOSTIC, 6, -9.268333162892e-01, 1.797693134862e+308, 2.1269e-01, 1.2171e-03, - 2DIAGNOSTIC, 7, -9.373394367510e-01, 1.797693134862e+308, 2.1440e-01, 1.7040e-03, - 2DIAGNOSTIC, 8, -9.452261230267e-01, 1.797693134862e+308, 2.1559e-01, 1.1930e-03, - 2DIAGNOSTIC, 9, -9.514829510762e-01, 1.797693134862e+308, 2.1712e-01, 1.5309e-03, - 2DIAGNOSTIC, 10, -9.550367738257e-01, 5.469226388211e-03, 2.1890e-01, 1.7838e-03, - 2DIAGNOSTIC, 11, -9.559127352535e-01, 4.869697737036e-03, 2.2029e-01, 1.3862e-03, - 2DIAGNOSTIC, 12, -9.628705112457e-01, 4.197605520627e-03, 2.2172e-01, 1.4291e-03, - 2DIAGNOSTIC, 13, -9.676474412929e-01, 3.437008502392e-03, 2.2318e-01, 1.4601e-03, - 2DIAGNOSTIC, 14, -9.706169512447e-01, 2.666067888010e-03, 2.2499e-01, 1.8101e-03, - 2DIAGNOSTIC, 15, -9.725145039679e-01, 1.946603613541e-03, 2.2723e-01, 2.2359e-03, - 2DIAGNOSTIC, 16, -9.720492073545e-01, 1.499510232334e-03, 2.2862e-01, 1.3950e-03, - 2DIAGNOSTIC, 17, -9.710235986520e-01, 1.135472433762e-03, 2.3028e-01, 1.6580e-03, - 2DIAGNOSTIC, 18, -9.714770495088e-01, 8.454424641179e-04, 2.3170e-01, 1.4169e-03, - 2DIAGNOSTIC, 19, -9.702715638802e-01, 5.876590203580e-04, 2.3312e-01, 1.4281e-03, - 2DIAGNOSTIC, 20, -9.698400263755e-01, 3.507946724084e-04, 2.3452e-01, 1.4000e-03, - 2DIAGNOSTIC, 21, -9.724560436496e-01, 1.533689077903e-04, 2.3587e-01, 1.3430e-03, - 2DIAGNOSTIC, 22, -9.719137055851e-01, 4.569957533003e-05, 2.3790e-01, 2.0308e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.047477592688e-01, 1.797693134862e+308, 4.4678e-01, 2.0888e-01, - 2DIAGNOSTIC, 2, -8.035624485400e-01, 1.797693134862e+308, 4.4915e-01, 2.3668e-03, - 2DIAGNOSTIC, 3, -8.048926109202e-01, 1.797693134862e+308, 4.5170e-01, 2.5530e-03, - 2DIAGNOSTIC, 4, -8.056553744004e-01, 1.797693134862e+308, 4.5428e-01, 2.5809e-03, - 2DIAGNOSTIC, 5, -8.060115649085e-01, 1.797693134862e+308, 4.5673e-01, 2.4509e-03, - 2DIAGNOSTIC, 6, -8.063682179856e-01, 1.797693134862e+308, 4.5876e-01, 2.0239e-03, - 2DIAGNOSTIC, 7, -8.071319712762e-01, 1.797693134862e+308, 4.6077e-01, 2.0130e-03, - 2DIAGNOSTIC, 8, -8.085512297080e-01, 1.797693134862e+308, 4.6301e-01, 2.2380e-03, - 2DIAGNOSTIC, 9, -8.093054939368e-01, 1.797693134862e+308, 4.6529e-01, 2.2810e-03, - 2DIAGNOSTIC, 10, -8.081075791139e-01, 4.153139700369e-04, 4.6782e-01, 2.5311e-03, - 2DIAGNOSTIC, 11, -8.090269516934e-01, 3.919834870846e-04, 4.7148e-01, 3.6628e-03, - 2DIAGNOSTIC, 12, -8.089243773392e-01, 2.977849505872e-04, 4.7398e-01, 2.5010e-03, - 2DIAGNOSTIC, 13, -8.101986557878e-01, 2.607213103296e-04, 4.7658e-01, 2.5971e-03, - 2DIAGNOSTIC, 14, -8.101519579511e-01, 2.227797724440e-04, 4.7885e-01, 2.2712e-03, - 2DIAGNOSTIC, 15, -8.101933797280e-01, 1.803142190305e-04, 4.8146e-01, 2.6050e-03, - 2DIAGNOSTIC, 16, -8.103764522940e-01, 1.390545960933e-04, 4.8400e-01, 2.5420e-03, - 2DIAGNOSTIC, 17, -8.103203206002e-01, 1.033856651566e-04, 4.8629e-01, 2.2941e-03, - 2DIAGNOSTIC, 18, -8.103249559847e-01, 8.940736915267e-05, 4.8916e-01, 2.8691e-03, - 2DIAGNOSTIC, 19, -8.104223466877e-01, 8.532206216605e-05, 4.9134e-01, 2.1751e-03, - 2DIAGNOSTIC, 20, -8.102042448673e-01, 4.877385771224e-05, 4.9394e-01, 2.6040e-03, - 2DIAGNOSTIC, 21, -8.103023644553e-01, 2.872415703579e-05, 4.9636e-01, 2.4209e-03, - 2DIAGNOSTIC, 22, -8.102728630265e-01, 5.211114296744e-06, 4.9908e-01, 2.7211e-03, - 2DIAGNOSTIC, 23, -8.104216138799e-01, 5.191450432089e-06, 5.0145e-01, 2.3692e-03, - 2DIAGNOSTIC, 24, -8.104765082930e-01, 4.881926309278e-06, 5.0434e-01, 2.8820e-03, - 2DIAGNOSTIC, 25, -8.105733761883e-01, 6.163055882538e-06, 5.0690e-01, 2.5671e-03, - 2DIAGNOSTIC, 26, -8.105100993402e-01, 8.543486210155e-06, 5.0922e-01, 2.3150e-03, - 2DIAGNOSTIC, 27, -8.105240176926e-01, 9.520630809258e-06, 5.1159e-01, 2.3730e-03, - 2DIAGNOSTIC, 28, -8.104859251283e-01, 9.146036782127e-06, 5.1458e-01, 2.9931e-03, - 2DIAGNOSTIC, 29, -8.106279058374e-01, 1.100567652769e-05, 5.1729e-01, 2.7070e-03, - 2DIAGNOSTIC, 30, -8.105158555167e-01, 7.860494659007e-06, 5.1968e-01, 2.3861e-03, - 2DIAGNOSTIC, 31, -8.104514767992e-01, 4.753623015386e-06, 5.2273e-01, 3.0489e-03, - 2DIAGNOSTIC, 32, -8.104998751593e-01, 1.705854403837e-06, 5.2538e-01, 2.6529e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.044112142004e-01, 1.797693134862e+308, 7.5695e-01, 2.3157e-01, - 2DIAGNOSTIC, 2, -7.061413842767e-01, 1.797693134862e+308, 7.6968e-01, 1.2735e-02, - 2DIAGNOSTIC, 3, -7.075764846815e-01, 1.797693134862e+308, 7.8360e-01, 1.3916e-02, - 2DIAGNOSTIC, 4, -7.086826474596e-01, 1.797693134862e+308, 7.9625e-01, 1.2651e-02, - 2DIAGNOSTIC, 5, -7.095363837940e-01, 1.797693134862e+308, 8.0921e-01, 1.2961e-02, - 2DIAGNOSTIC, 6, -7.109112644590e-01, 1.797693134862e+308, 8.2250e-01, 1.3293e-02, - 2DIAGNOSTIC, 7, -7.126789094168e-01, 1.797693134862e+308, 8.3538e-01, 1.2882e-02, - 2DIAGNOSTIC, 8, -7.152712930588e-01, 1.797693134862e+308, 8.5646e-01, 2.1075e-02, - 2DIAGNOSTIC, 9, -7.154563634518e-01, 1.797693134862e+308, 8.7105e-01, 1.4590e-02, - 2DIAGNOSTIC, 10, -7.155042093805e-01, 1.072094713236e-03, 8.8399e-01, 1.2938e-02, - 2DIAGNOSTIC, 11, -7.158984775559e-01, 8.897450654618e-04, 9.0181e-01, 1.7825e-02, - 2DIAGNOSTIC, 12, -7.162160618004e-01, 7.244326388315e-04, 9.1707e-01, 1.5263e-02, - 2DIAGNOSTIC, 13, -7.163806208123e-01, 5.670410992512e-04, 9.2995e-01, 1.2875e-02, - 2DIAGNOSTIC, 14, -7.167623890544e-01, 4.237858370912e-04, 9.4702e-01, 1.7068e-02, - 2DIAGNOSTIC, 15, -7.170092044413e-01, 2.910010655097e-04, 9.6613e-01, 1.9109e-02, - 2DIAGNOSTIC, 16, -7.170079774533e-01, 1.820583596183e-04, 9.8320e-01, 1.7078e-02, - 2DIAGNOSTIC, 17, -7.170376362263e-01, 1.099385816495e-04, 9.9999e-01, 1.6787e-02, - 2DIAGNOSTIC, 18, -7.170966381309e-01, 9.457204995118e-05, 1.0155e+00, 1.5477e-02, - 2DIAGNOSTIC, 19, -7.170769611252e-01, 7.568577818363e-05, 1.0302e+00, 1.4761e-02, - 2DIAGNOSTIC, 20, -7.171014131289e-01, 5.308970484643e-05, 1.0433e+00, 1.3022e-02, - 2DIAGNOSTIC, 21, -7.170925964675e-01, 3.513162673301e-05, 1.0582e+00, 1.4935e-02, - 2DIAGNOSTIC, 22, -7.170805704438e-01, 2.126614984251e-05, 1.0750e+00, 1.6823e-02, - 2DIAGNOSTIC, 23, -7.170297262281e-01, 8.580417085041e-06, 1.0899e+00, 1.4859e-02, - 2DIAGNOSTIC, 24, -7.170151867530e-01, 2.280525653119e-06, 1.1048e+00, 1.4948e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.943728181570e-01, 1.797693134862e+308, 1.5374e+00, 4.3257e-01, - 2DIAGNOSTIC, 2, -5.950699641229e-01, 1.797693134862e+308, 1.6287e+00, 9.1328e-02, - 2DIAGNOSTIC, 3, -5.956994722758e-01, 1.797693134862e+308, 1.7210e+00, 9.2312e-02, - 2DIAGNOSTIC, 4, -5.962117948337e-01, 1.797693134862e+308, 1.8133e+00, 9.2309e-02, - 2DIAGNOSTIC, 5, -5.966133557816e-01, 1.797693134862e+308, 1.8953e+00, 8.1927e-02, - 2DIAGNOSTIC, 6, -5.973183296599e-01, 1.797693134862e+308, 1.9999e+00, 1.0461e-01, - 2DIAGNOSTIC, 7, -5.976337580834e-01, 1.797693134862e+308, 2.1477e+00, 1.4780e-01, - 2DIAGNOSTIC, 8, -5.977258664388e-01, 1.797693134862e+308, 2.2428e+00, 9.5080e-02, - 2DIAGNOSTIC, 9, -5.977673218012e-01, 1.797693134862e+308, 2.3395e+00, 9.6772e-02, - 2DIAGNOSTIC, 10, -5.977857223889e-01, 3.829616527132e-04, 2.4776e+00, 1.3807e-01, - 2DIAGNOSTIC, 11, -5.977876132883e-01, 2.715099382241e-04, 2.5877e+00, 1.1008e-01, - 2DIAGNOSTIC, 12, -5.977887135014e-01, 1.817838711039e-04, 2.6999e+00, 1.1219e-01, - 2DIAGNOSTIC, 13, -5.977877691739e-01, 1.126983695993e-04, 2.8102e+00, 1.1029e-01, - 2DIAGNOSTIC, 14, -5.977912992636e-01, 6.106305799014e-05, 2.9190e+00, 1.0884e-01, - 2DIAGNOSTIC, 15, -5.977874411752e-01, 2.308563004653e-05, 3.0492e+00, 1.3021e-01, - 2DIAGNOSTIC, 16, -5.977882097061e-01, 8.720676290958e-06, 3.1600e+00, 1.1082e-01, - 2DIAGNOSTIC, 17, -5.977889816589e-01, 4.228942930784e-06, 3.2710e+00, 1.1099e-01, - 2DIAGNOSTIC, 18, -5.977834631533e-01, 2.282040119574e-06, 3.3658e+00, 9.4750e-02, - 2DIAGNOSTIC, 19, -5.977875208369e-01, 1.624061152991e-06, 3.4730e+00, 1.0723e-01, - 2DIAGNOSTIC, 20, -5.977943088180e-01, 1.631899308518e-06, 3.5756e+00, 1.0260e-01, - 2DIAGNOSTIC, 21, -5.977931139807e-01, 1.646024777126e-06, 3.6917e+00, 1.1611e-01, - 2DIAGNOSTIC, 22, -5.977897074443e-01, 1.601048467081e-06, 3.7925e+00, 1.0079e-01, - 2DIAGNOSTIC, 23, -5.977875783110e-01, 1.484766181628e-06, 3.8951e+00, 1.0259e-01, - 2DIAGNOSTIC, 24, -5.977854516994e-01, 1.397766919438e-06, 3.9941e+00, 9.8957e-02, - 2DIAGNOSTIC, 25, -5.977833097366e-01, 1.192121038218e-06, 4.1001e+00, 1.0599e-01, - 2DIAGNOSTIC, 26, -5.977824985238e-01, 1.008910478759e-06, 4.2058e+00, 1.0574e-01, - Elapsed time (stage 1): 4.3206e+00 - - -Total elapsed time: 8.5207e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:56:40 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 04:56:40 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55ffdc3ab4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 46.8152, -138.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ffdc3b0fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f11a469a010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55ffdc3ac850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 46.8152, -138.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ffdc3a9f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f11a0fdb010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55ffdc3c3b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 46.8152, -138.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ffdc3b0550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f119d91c010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55ffdc3c8d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 46.8152, -138.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ffdc3c6c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f119a25d010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55ffdc3caf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 46.8152, -138.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ffdc3c93a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f1196b9e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55ffdc3cb540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 46.8152, -138.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ffdc3cb4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f11934df010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.352425233910e-01, 1.797693134862e+308, 2.1190e-01, 2.1190e-01, - 2DIAGNOSTIC, 2, -6.373968183589e-01, 1.797693134862e+308, 2.1380e-01, 1.9000e-03, - 2DIAGNOSTIC, 3, -6.419122851339e-01, 1.797693134862e+308, 2.1564e-01, 1.8411e-03, - 2DIAGNOSTIC, 4, -6.484593580584e-01, 1.797693134862e+308, 2.1752e-01, 1.8711e-03, - 2DIAGNOSTIC, 5, -6.523283292155e-01, 1.797693134862e+308, 2.1956e-01, 2.0468e-03, - 2DIAGNOSTIC, 6, -6.532204891435e-01, 1.797693134862e+308, 2.2141e-01, 1.8451e-03, - 2DIAGNOSTIC, 7, -6.533392433437e-01, 1.797693134862e+308, 2.2325e-01, 1.8470e-03, - 2DIAGNOSTIC, 8, -6.534751071539e-01, 1.797693134862e+308, 2.2536e-01, 2.1079e-03, - 2DIAGNOSTIC, 9, -6.537087105395e-01, 1.797693134862e+308, 2.2840e-01, 3.0351e-03, - 2DIAGNOSTIC, 10, -6.539055149493e-01, 1.908329824788e-03, 2.3054e-01, 2.1441e-03, - 2DIAGNOSTIC, 11, -6.539596025874e-01, 1.248572324122e-03, 2.3267e-01, 2.1281e-03, - 2DIAGNOSTIC, 12, -6.539993196813e-01, 6.684025823771e-04, 2.3477e-01, 2.0981e-03, - 2DIAGNOSTIC, 13, -6.540521613725e-01, 2.674695259894e-04, 2.3671e-01, 1.9410e-03, - 2DIAGNOSTIC, 14, -6.551355097174e-01, 1.352010179826e-04, 2.3983e-01, 3.1228e-03, - 2DIAGNOSTIC, 15, -6.575906108575e-01, 1.911322716266e-04, 2.4391e-01, 4.0810e-03, - 2DIAGNOSTIC, 16, -6.574540114655e-01, 2.417727183387e-04, 2.4687e-01, 2.9569e-03, - 2DIAGNOSTIC, 17, -6.572849354968e-01, 2.643912729729e-04, 2.4967e-01, 2.7969e-03, - 2DIAGNOSTIC, 18, -6.571587491294e-01, 2.613135837528e-04, 2.5217e-01, 2.5079e-03, - 2DIAGNOSTIC, 19, -6.571824537898e-01, 2.396758143544e-04, 2.5464e-01, 2.4660e-03, - 2DIAGNOSTIC, 20, -6.572414742255e-01, 2.025932762273e-04, 2.5703e-01, 2.3921e-03, - 2DIAGNOSTIC, 21, -6.571275819442e-01, 1.492661755247e-04, 2.5909e-01, 2.0590e-03, - 2DIAGNOSTIC, 22, -6.570133009665e-01, 8.673867007726e-05, 2.6114e-01, 2.0509e-03, - 2DIAGNOSTIC, 23, -6.570327265088e-01, 2.310882166245e-05, 2.6343e-01, 2.2900e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.519074540885e-01, 1.797693134862e+308, 4.8737e-01, 2.2394e-01, - 2DIAGNOSTIC, 2, -5.528055203287e-01, 1.797693134862e+308, 5.0042e-01, 1.3050e-02, - 2DIAGNOSTIC, 3, -5.536407933496e-01, 1.797693134862e+308, 5.1357e-01, 1.3148e-02, - 2DIAGNOSTIC, 4, -5.542492898299e-01, 1.797693134862e+308, 5.2823e-01, 1.4664e-02, - 2DIAGNOSTIC, 5, -5.545277756639e-01, 1.797693134862e+308, 5.4323e-01, 1.5000e-02, - 2DIAGNOSTIC, 6, -5.545835272318e-01, 1.797693134862e+308, 5.5736e-01, 1.4130e-02, - 2DIAGNOSTIC, 7, -5.547387406031e-01, 1.797693134862e+308, 5.7209e-01, 1.4726e-02, - 2DIAGNOSTIC, 8, -5.551955367468e-01, 1.797693134862e+308, 5.8674e-01, 1.4655e-02, - 2DIAGNOSTIC, 9, -5.554357534996e-01, 1.797693134862e+308, 6.0866e-01, 2.1912e-02, - 2DIAGNOSTIC, 10, -5.553477164976e-01, 3.655898457763e-04, 6.2194e-01, 1.3287e-02, - 2DIAGNOSTIC, 11, -5.552915509878e-01, 2.428208914265e-04, 6.3917e-01, 1.7227e-02, - 2DIAGNOSTIC, 12, -5.552824755614e-01, 1.564936656718e-04, 6.5575e-01, 1.6577e-02, - 2DIAGNOSTIC, 13, -5.552810958655e-01, 1.015018349696e-04, 6.6899e-01, 1.3248e-02, - 2DIAGNOSTIC, 14, -5.552743636919e-01, 6.700009972700e-05, 6.8237e-01, 1.3380e-02, - 2DIAGNOSTIC, 15, -5.552943346026e-01, 4.168425821677e-05, 6.9930e-01, 1.6926e-02, - 2DIAGNOSTIC, 16, -5.553092279949e-01, 1.835137181681e-05, 7.1428e-01, 1.4984e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.672839036993e-01, 1.797693134862e+308, 1.0978e+00, 3.8349e-01, - 2DIAGNOSTIC, 2, -4.678055042906e-01, 1.797693134862e+308, 1.1953e+00, 9.7540e-02, - 2DIAGNOSTIC, 3, -4.683196113721e-01, 1.797693134862e+308, 1.2893e+00, 9.4003e-02, - 2DIAGNOSTIC, 4, -4.686032075584e-01, 1.797693134862e+308, 1.4077e+00, 1.1839e-01, - 2DIAGNOSTIC, 5, -4.685998480383e-01, 1.797693134862e+308, 1.5518e+00, 1.4411e-01, - 2DIAGNOSTIC, 6, -4.686029089473e-01, 1.797693134862e+308, 1.6567e+00, 1.0487e-01, - 2DIAGNOSTIC, 7, -4.686023497996e-01, 1.797693134862e+308, 1.7617e+00, 1.0499e-01, - 2DIAGNOSTIC, 8, -4.685980016194e-01, 1.797693134862e+308, 1.8660e+00, 1.0437e-01, - 2DIAGNOSTIC, 9, -4.685961724515e-01, 1.797693134862e+308, 1.9864e+00, 1.2038e-01, - 2DIAGNOSTIC, 10, -4.685951650724e-01, 1.365333364374e-04, 2.0939e+00, 1.0742e-01, - 2DIAGNOSTIC, 11, -4.685971789325e-01, 5.951659821556e-05, 2.2107e+00, 1.1685e-01, - 2DIAGNOSTIC, 12, -4.685957935746e-01, 1.598896760413e-05, 2.3569e+00, 1.4617e-01, - 2DIAGNOSTIC, 13, -4.685964113219e-01, 1.606942284904e-06, 2.4619e+00, 1.0501e-01, - 2DIAGNOSTIC, 14, -4.685957844151e-01, 1.627466871656e-06, 2.5539e+00, 9.2024e-02, - 2DIAGNOSTIC, 15, -4.685915786950e-01, 1.392270844489e-06, 2.6588e+00, 1.0489e-01, - 2DIAGNOSTIC, 16, -4.685910166880e-01, 1.349296758713e-06, 2.7650e+00, 1.0625e-01, - 2DIAGNOSTIC, 17, -4.685917213985e-01, 1.377398524134e-06, 2.8713e+00, 1.0627e-01, - 2DIAGNOSTIC, 18, -4.685908778316e-01, 1.272208602805e-06, 2.9766e+00, 1.0524e-01, - 2DIAGNOSTIC, 19, -4.685886109965e-01, 1.095720124265e-06, 3.0814e+00, 1.0487e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.099527598469e-01, 1.797693134862e+308, 4.3338e+00, 1.2524e+00, - 2DIAGNOSTIC, 2, -4.099826555854e-01, 1.797693134862e+308, 4.8497e+00, 5.1594e-01, - 2DIAGNOSTIC, 3, -4.100089044497e-01, 1.797693134862e+308, 5.3386e+00, 4.8891e-01, - 2DIAGNOSTIC, 4, -4.100430755073e-01, 1.797693134862e+308, 5.9067e+00, 5.6804e-01, - 2DIAGNOSTIC, 5, -4.100519338479e-01, 1.797693134862e+308, 6.4532e+00, 5.4652e-01, - 2DIAGNOSTIC, 6, -4.100492820738e-01, 1.797693134862e+308, 7.0604e+00, 6.0714e-01, - 2DIAGNOSTIC, 7, -4.100483152248e-01, 1.797693134862e+308, 7.5950e+00, 5.3469e-01, - 2DIAGNOSTIC, 8, -4.100487920753e-01, 1.797693134862e+308, 8.1990e+00, 6.0396e-01, - 2DIAGNOSTIC, 9, -4.100440361090e-01, 1.797693134862e+308, 9.4267e+00, 1.2277e+00, - 2DIAGNOSTIC, 10, -4.100442647941e-01, 1.532107025468e-05, 1.0018e+01, 5.9147e-01, - 2DIAGNOSTIC, 11, -4.100441604112e-01, 8.653939237713e-06, 1.0739e+01, 7.2062e-01, - 2DIAGNOSTIC, 12, -4.100442438589e-01, 4.298981153519e-06, 1.1341e+01, 6.0241e-01, - 2DIAGNOSTIC, 13, -4.100438563332e-01, 1.795987319544e-06, 1.2022e+01, 6.8108e-01, - 2DIAGNOSTIC, 14, -4.100438808703e-01, 1.392143888349e-06, 1.2611e+01, 5.8828e-01, - 2DIAGNOSTIC, 15, -4.100437553347e-01, 1.529845981410e-06, 1.3171e+01, 5.6033e-01, - 2DIAGNOSTIC, 16, -4.100437918966e-01, 1.589234395263e-06, 1.3748e+01, 5.7688e-01, - 2DIAGNOSTIC, 17, -4.100436769675e-01, 1.631441695647e-06, 1.4285e+01, 5.3740e-01, - 2DIAGNOSTIC, 18, -4.100437315339e-01, 1.717167188123e-06, 1.4774e+01, 4.8931e-01, - 2DIAGNOSTIC, 19, -4.100436493802e-01, 1.621745742253e-06, 1.5277e+01, 5.0208e-01, - 2DIAGNOSTIC, 20, -4.100434649451e-01, 1.542302840614e-06, 1.5817e+01, 5.4087e-01, - 2DIAGNOSTIC, 21, -4.100436502701e-01, 1.477550111907e-06, 1.6389e+01, 5.7157e-01, - 2DIAGNOSTIC, 22, -4.100439167886e-01, 1.433252583768e-06, 1.6870e+01, 4.8137e-01, - 2DIAGNOSTIC, 23, -4.100439713365e-01, 1.383651330185e-06, 1.7453e+01, 5.8255e-01, - 2DIAGNOSTIC, 24, -4.100438070549e-01, 1.334344497853e-06, 1.8026e+01, 5.7341e-01, - 2DIAGNOSTIC, 25, -4.100434494707e-01, 1.275053037382e-06, 1.8565e+01, 5.3835e-01, - 2DIAGNOSTIC, 26, -4.100433564883e-01, 1.218792250603e-06, 1.9077e+01, 5.1206e-01, - 2DIAGNOSTIC, 27, -4.100433008956e-01, 1.162370306472e-06, 1.9608e+01, 5.3079e-01, - 2DIAGNOSTIC, 28, -4.100432843535e-01, 1.112322536474e-06, 2.0152e+01, 5.4418e-01, - 2DIAGNOSTIC, 29, -4.100432104858e-01, 1.064577787903e-06, 2.0744e+01, 5.9201e-01, - 2DIAGNOSTIC, 30, -4.100432301580e-01, 1.019423210104e-06, 2.1507e+01, 7.6354e-01, - Elapsed time (stage 0): 2.1828e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.448857360558e-01, 1.797693134862e+308, 1.7853e-01, 1.7853e-01, - 2DIAGNOSTIC, 2, -6.464045529662e-01, 1.797693134862e+308, 1.8052e-01, 1.9870e-03, - 2DIAGNOSTIC, 3, -6.484371126793e-01, 1.797693134862e+308, 1.8262e-01, 2.0969e-03, - 2DIAGNOSTIC, 4, -6.508499473503e-01, 1.797693134862e+308, 1.8463e-01, 2.0111e-03, - 2DIAGNOSTIC, 5, -6.540000922783e-01, 1.797693134862e+308, 1.8679e-01, 2.1591e-03, - 2DIAGNOSTIC, 6, -6.571910923202e-01, 1.797693134862e+308, 1.8879e-01, 1.9991e-03, - 2DIAGNOSTIC, 7, -6.608447257390e-01, 1.797693134862e+308, 1.9119e-01, 2.4049e-03, - 2DIAGNOSTIC, 8, -6.629245692347e-01, 1.797693134862e+308, 1.9337e-01, 2.1820e-03, - 2DIAGNOSTIC, 9, -6.636692352225e-01, 1.797693134862e+308, 1.9536e-01, 1.9829e-03, - 2DIAGNOSTIC, 10, -6.662763009367e-01, 2.250602542019e-03, 1.9907e-01, 3.7119e-03, - 2DIAGNOSTIC, 11, -6.662591669712e-01, 1.939530019094e-03, 2.0169e-01, 2.6190e-03, - 2DIAGNOSTIC, 12, -6.662664484434e-01, 1.562013744966e-03, 2.0437e-01, 2.6839e-03, - 2DIAGNOSTIC, 13, -6.661791422503e-01, 1.167675324881e-03, 2.0687e-01, 2.5020e-03, - 2DIAGNOSTIC, 14, -6.661084091464e-01, 7.961578068653e-04, 2.0914e-01, 2.2671e-03, - 2DIAGNOSTIC, 15, -6.659355083182e-01, 4.861804413195e-04, 2.1167e-01, 2.5260e-03, - 2DIAGNOSTIC, 16, -6.660605418306e-01, 2.582749689394e-04, 2.1410e-01, 2.4371e-03, - 2DIAGNOSTIC, 17, -6.659233257827e-01, 1.225694834626e-04, 2.1622e-01, 2.1160e-03, - 2DIAGNOSTIC, 18, -6.658149188855e-01, 3.841476754465e-05, 2.1860e-01, 2.3820e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.596592901078e-01, 1.797693134862e+308, 4.3520e-01, 2.1660e-01, - 2DIAGNOSTIC, 2, -5.603681110204e-01, 1.797693134862e+308, 4.5051e-01, 1.5304e-02, - 2DIAGNOSTIC, 3, -5.610747498415e-01, 1.797693134862e+308, 4.6465e-01, 1.4147e-02, - 2DIAGNOSTIC, 4, -5.615410026446e-01, 1.797693134862e+308, 4.7975e-01, 1.5096e-02, - 2DIAGNOSTIC, 5, -5.618646165212e-01, 1.797693134862e+308, 4.9455e-01, 1.4803e-02, - 2DIAGNOSTIC, 6, -5.619891536435e-01, 1.797693134862e+308, 5.0942e-01, 1.4870e-02, - 2DIAGNOSTIC, 7, -5.623296123468e-01, 1.797693134862e+308, 5.2805e-01, 1.8628e-02, - 2DIAGNOSTIC, 8, -5.623419622998e-01, 1.797693134862e+308, 5.4454e-01, 1.6491e-02, - 2DIAGNOSTIC, 9, -5.624409890814e-01, 1.797693134862e+308, 5.6341e-01, 1.8870e-02, - 2DIAGNOSTIC, 10, -5.625933268941e-01, 3.079948646491e-04, 5.8939e-01, 2.5976e-02, - 2DIAGNOSTIC, 11, -5.626069410948e-01, 2.087997907879e-04, 6.0446e-01, 1.5076e-02, - 2DIAGNOSTIC, 12, -5.626552948702e-01, 1.390926388687e-04, 6.1950e-01, 1.5033e-02, - 2DIAGNOSTIC, 13, -5.626979176939e-01, 9.664843669552e-05, 6.3471e-01, 1.5218e-02, - 2DIAGNOSTIC, 14, -5.627338966401e-01, 6.968701898349e-05, 6.4955e-01, 1.4834e-02, - 2DIAGNOSTIC, 15, -5.627684297147e-01, 5.217956292672e-05, 6.6457e-01, 1.5025e-02, - 2DIAGNOSTIC, 16, -5.628136038173e-01, 3.735762140623e-05, 6.8009e-01, 1.5513e-02, - 2DIAGNOSTIC, 17, -5.628837198464e-01, 3.329750192478e-05, 7.0216e-01, 2.2072e-02, - 2DIAGNOSTIC, 18, -5.629004247284e-01, 2.752615399162e-05, 7.1788e-01, 1.5719e-02, - 2DIAGNOSTIC, 19, -5.629020453414e-01, 2.256914539340e-05, 7.3552e-01, 1.7646e-02, - 2DIAGNOSTIC, 20, -5.629032263817e-01, 2.008034011939e-05, 7.4984e-01, 1.4317e-02, - 2DIAGNOSTIC, 21, -5.629044678446e-01, 1.643576059662e-05, 7.6413e-01, 1.4287e-02, - 2DIAGNOSTIC, 22, -5.629066025462e-01, 1.285240796502e-05, 7.7927e-01, 1.5145e-02, - 2DIAGNOSTIC, 23, -5.629084370653e-01, 9.480923663284e-06, 7.9888e-01, 1.9611e-02, - 2DIAGNOSTIC, 24, -5.629087522322e-01, 6.408671859824e-06, 8.2024e-01, 2.1361e-02, - 2DIAGNOSTIC, 25, -5.629087531613e-01, 3.800164894312e-06, 8.6839e-01, 4.8150e-02, - 2DIAGNOSTIC, 26, -5.629087531610e-01, 1.998322544813e-06, 9.0500e-01, 3.6607e-02, - 2DIAGNOSTIC, 27, -5.629087531610e-01, 1.560544866053e-06, 9.2336e-01, 1.8356e-02, - 2DIAGNOSTIC, 28, -5.629087531610e-01, 1.418652669852e-06, 9.4128e-01, 1.7927e-02, - 2DIAGNOSTIC, 29, -5.629087531610e-01, 1.288267796259e-06, 9.5888e-01, 1.7592e-02, - 2DIAGNOSTIC, 30, -5.629087531610e-01, 1.168788487813e-06, 9.7734e-01, 1.8460e-02, - 2DIAGNOSTIC, 31, -5.629087531610e-01, 1.066523782435e-06, 9.9345e-01, 1.6111e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.684630074608e-01, 1.797693134862e+308, 1.3675e+00, 3.7404e-01, - 2DIAGNOSTIC, 2, -4.690017061880e-01, 1.797693134862e+308, 1.4682e+00, 1.0075e-01, - 2DIAGNOSTIC, 3, -4.695756990186e-01, 1.797693134862e+308, 1.5742e+00, 1.0594e-01, - 2DIAGNOSTIC, 4, -4.699643127277e-01, 1.797693134862e+308, 1.6742e+00, 1.0001e-01, - 2DIAGNOSTIC, 5, -4.700468099844e-01, 1.797693134862e+308, 1.7750e+00, 1.0082e-01, - 2DIAGNOSTIC, 6, -4.701121553437e-01, 1.797693134862e+308, 1.8757e+00, 1.0066e-01, - 2DIAGNOSTIC, 7, -4.703602757575e-01, 1.797693134862e+308, 2.0444e+00, 1.6870e-01, - 2DIAGNOSTIC, 8, -4.703854046844e-01, 1.797693134862e+308, 2.2005e+00, 1.5613e-01, - 2DIAGNOSTIC, 9, -4.703802351140e-01, 1.797693134862e+308, 2.3490e+00, 1.4856e-01, - 2DIAGNOSTIC, 10, -4.703800674516e-01, 2.382051707624e-04, 2.4483e+00, 9.9239e-02, - 2DIAGNOSTIC, 11, -4.703768636583e-01, 1.441412173155e-04, 2.5475e+00, 9.9226e-02, - 2DIAGNOSTIC, 12, -4.703749093216e-01, 7.940202332792e-05, 2.6543e+00, 1.0675e-01, - 2DIAGNOSTIC, 13, -4.703740420475e-01, 4.387778812077e-05, 2.7565e+00, 1.0229e-01, - 2DIAGNOSTIC, 14, -4.703735094428e-01, 2.653580128235e-05, 2.8851e+00, 1.2857e-01, - 2DIAGNOSTIC, 15, -4.703738823684e-01, 1.269528601752e-05, 2.9869e+00, 1.0174e-01, - 2DIAGNOSTIC, 16, -4.703717938021e-01, 1.747418992018e-06, 3.0860e+00, 9.9171e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.098119037440e-01, 1.797693134862e+308, 4.3729e+00, 1.2869e+00, - 2DIAGNOSTIC, 2, -4.100433823094e-01, 1.797693134862e+308, 4.9380e+00, 5.6503e-01, - 2DIAGNOSTIC, 3, -4.102268736842e-01, 1.797693134862e+308, 5.5424e+00, 6.0447e-01, - 2DIAGNOSTIC, 4, -4.103405140262e-01, 1.797693134862e+308, 6.1554e+00, 6.1299e-01, - 2DIAGNOSTIC, 5, -4.106461857570e-01, 1.797693134862e+308, 6.8303e+00, 6.7487e-01, - 2DIAGNOSTIC, 6, -4.112474235015e-01, 1.797693134862e+308, 8.1778e+00, 1.3475e+00, - 2DIAGNOSTIC, 7, -4.112455771629e-01, 1.797693134862e+308, 9.0769e+00, 8.9910e-01, - 2DIAGNOSTIC, 8, -4.112453066237e-01, 1.797693134862e+308, 9.7216e+00, 6.4471e-01, - 2DIAGNOSTIC, 9, -4.112450544732e-01, 1.797693134862e+308, 1.0512e+01, 7.9028e-01, - 2DIAGNOSTIC, 10, -4.112443938875e-01, 2.605372458390e-04, 1.1125e+01, 6.1347e-01, - 2DIAGNOSTIC, 11, -4.112444483617e-01, 1.918693301452e-04, 1.1777e+01, 6.5162e-01, - 2DIAGNOSTIC, 12, -4.112442221197e-01, 1.309812966280e-04, 1.2465e+01, 6.8822e-01, - 2DIAGNOSTIC, 13, -4.112436267722e-01, 7.816118559735e-05, 1.3147e+01, 6.8180e-01, - 2DIAGNOSTIC, 14, -4.112438013503e-01, 3.156532958941e-05, 1.3804e+01, 6.5729e-01, - 2DIAGNOSTIC, 15, -4.112438097185e-01, 1.812368838935e-06, 1.4462e+01, 6.5728e-01, - 2DIAGNOSTIC, 16, -4.112437282659e-01, 1.798094732927e-06, 1.5238e+01, 7.7653e-01, - 2DIAGNOSTIC, 17, -4.112435977370e-01, 1.722919514002e-06, 1.5925e+01, 6.8647e-01, - 2DIAGNOSTIC, 18, -4.112435363781e-01, 1.657683487526e-06, 1.6597e+01, 6.7209e-01, - 2DIAGNOSTIC, 19, -4.112433707769e-01, 1.594888353773e-06, 1.7286e+01, 6.8941e-01, - 2DIAGNOSTIC, 20, -4.112434668671e-01, 1.525894381398e-06, 1.7966e+01, 6.8008e-01, - 2DIAGNOSTIC, 21, -4.112433873183e-01, 1.468702473639e-06, 1.8617e+01, 6.5119e-01, - 2DIAGNOSTIC, 22, -4.112432511455e-01, 1.410422222008e-06, 1.9176e+01, 5.5856e-01, - 2DIAGNOSTIC, 23, -4.112432240567e-01, 1.341908734832e-06, 1.9783e+01, 6.0698e-01, - 2DIAGNOSTIC, 24, -4.112436779763e-01, 1.301058361082e-06, 2.0505e+01, 7.2222e-01, - 2DIAGNOSTIC, 25, -4.112438056456e-01, 1.269136409451e-06, 2.1162e+01, 6.5729e-01, - 2DIAGNOSTIC, 26, -4.112437412631e-01, 1.236243785396e-06, 2.1807e+01, 6.4425e-01, - 2DIAGNOSTIC, 27, -4.112436476928e-01, 1.199280430630e-06, 2.2473e+01, 6.6589e-01, - 2DIAGNOSTIC, 28, -4.112435478203e-01, 1.159229143913e-06, 2.3075e+01, 6.0245e-01, - 2DIAGNOSTIC, 29, -4.112431868126e-01, 1.106930314285e-06, 2.3773e+01, 6.9781e-01, - 2DIAGNOSTIC, 30, -4.112432453496e-01, 1.060874967068e-06, 2.4391e+01, 6.1820e-01, - 2DIAGNOSTIC, 31, -4.112431974610e-01, 1.015035958715e-06, 2.5069e+01, 6.7832e-01, - Elapsed time (stage 1): 2.5455e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.088860114481e-01, 1.797693134862e+308, 2.4955e-01, 2.4954e-01, - 1DIAGNOSTIC, 2, -9.227842758329e-01, 1.797693134862e+308, 3.5145e-01, 1.0190e-01, - 1DIAGNOSTIC, 3, -9.335286864364e-01, 1.797693134862e+308, 4.4550e-01, 9.4051e-02, - 1DIAGNOSTIC, 4, -9.412911256841e-01, 1.797693134862e+308, 5.4142e-01, 9.5922e-02, - 1DIAGNOSTIC, 5, -9.468086997130e-01, 1.797693134862e+308, 6.3997e-01, 9.8552e-02, - 1DIAGNOSTIC, 6, -9.501355794863e-01, 1.797693134862e+308, 7.3465e-01, 9.4683e-02, - 1DIAGNOSTIC, 7, -9.526675984702e-01, 1.797693134862e+308, 8.3824e-01, 1.0359e-01, - 1DIAGNOSTIC, 8, -9.544155610330e-01, 1.797693134862e+308, 9.3847e-01, 1.0023e-01, - 1DIAGNOSTIC, 9, -9.553835822439e-01, 1.797693134862e+308, 1.0311e+00, 9.2640e-02, - 1DIAGNOSTIC, 10, -9.553659107877e-01, 2.883656635619e-03, 1.1272e+00, 9.6132e-02, - 1DIAGNOSTIC, 11, -9.556040520506e-01, 1.804023430137e-03, 1.2249e+00, 9.7612e-02, - 1DIAGNOSTIC, 12, -9.554504701459e-01, 1.085418102049e-03, 1.3195e+00, 9.4599e-02, - 1DIAGNOSTIC, 13, -9.557274642103e-01, 6.326166937315e-04, 1.4176e+00, 9.8180e-02, - 1DIAGNOSTIC, 14, -9.556058575955e-01, 3.496878276970e-04, 1.5180e+00, 1.0040e-01, - 1DIAGNOSTIC, 15, -9.557710690605e-01, 1.861645147873e-04, 1.6119e+00, 9.3827e-02, - 1DIAGNOSTIC, 16, -9.556120299731e-01, 8.504498055475e-05, 1.7069e+00, 9.5034e-02, - 1DIAGNOSTIC, 17, -9.558124992698e-01, 3.589261005535e-05, 1.8047e+00, 9.7833e-02, - 1DIAGNOSTIC, 18, -9.556543605004e-01, 1.503705090355e-05, 1.9023e+00, 9.7557e-02, - 1DIAGNOSTIC, 19, -9.558517684894e-01, 1.363241617895e-05, 1.9973e+00, 9.5014e-02, - 1DIAGNOSTIC, 20, -9.556903249933e-01, 8.425104777700e-06, 2.0901e+00, 9.2827e-02, - 1DIAGNOSTIC, 21, -9.559526826389e-01, 1.038111837593e-05, 2.1882e+00, 9.8068e-02, - 1DIAGNOSTIC, 22, -9.558540552762e-01, 7.694399108672e-06, 2.2807e+00, 9.2519e-02, - 1DIAGNOSTIC, 23, -9.560965731799e-01, 1.151409210524e-05, 2.3798e+00, 9.9138e-02, - 1DIAGNOSTIC, 24, -9.560305176420e-01, 1.160922760312e-05, 2.4816e+00, 1.0171e-01, - 1DIAGNOSTIC, 25, -9.562111681628e-01, 1.497208464279e-05, 2.5810e+00, 9.9474e-02, - 1DIAGNOSTIC, 26, -9.560889035834e-01, 1.343870665918e-05, 2.6722e+00, 9.1204e-02, - 1DIAGNOSTIC, 27, -9.563118903625e-01, 1.565362032702e-05, 2.7633e+00, 9.1025e-02, - 1DIAGNOSTIC, 28, -9.561728879858e-01, 1.304858141601e-05, 2.8596e+00, 9.6303e-02, - 1DIAGNOSTIC, 29, -9.563850487585e-01, 1.382673823309e-05, 2.9601e+00, 1.0050e-01, - 1DIAGNOSTIC, 30, -9.562272946813e-01, 1.005969883194e-05, 3.0594e+00, 9.9387e-02, - 1DIAGNOSTIC, 31, -9.564374797996e-01, 1.033534430994e-05, 3.1552e+00, 9.5761e-02, - 1DIAGNOSTIC, 32, -9.562685140066e-01, 7.102531539516e-06, 3.2503e+00, 9.5134e-02, - 1DIAGNOSTIC, 33, -9.564797282230e-01, 7.661922194563e-06, 3.3432e+00, 9.2869e-02, - 1DIAGNOSTIC, 34, -9.563024292463e-01, 5.327053568857e-06, 3.4377e+00, 9.4440e-02, - 1DIAGNOSTIC, 35, -9.565109777965e-01, 6.113012991839e-06, 3.5399e+00, 1.0222e-01, - 1DIAGNOSTIC, 36, -9.563934562550e-01, 4.276537125550e-06, 3.6453e+00, 1.0542e-01, - 1DIAGNOSTIC, 37, -9.565223064815e-01, 5.121519184390e-06, 3.7464e+00, 1.0110e-01, - 1DIAGNOSTIC, 38, -9.563953610323e-01, 3.360988563409e-06, 3.8495e+00, 1.0308e-01, - 1DIAGNOSTIC, 39, -9.565670352082e-01, 4.456257234702e-06, 3.9444e+00, 9.4957e-02, - 1DIAGNOSTIC, 40, -9.563814395534e-01, 2.503995953626e-06, 4.0425e+00, 9.8114e-02, - 1DIAGNOSTIC, 41, -9.565514949122e-01, 3.327790094411e-06, 4.1476e+00, 1.0503e-01, - 1DIAGNOSTIC, 42, -9.563620195116e-01, 1.249670012169e-06, 4.2468e+00, 9.9270e-02, - 1DIAGNOSTIC, 43, -9.565290810914e-01, 1.922908892466e-06, 4.3464e+00, 9.9569e-02, - 1DIAGNOSTIC, 44, -9.563413202516e-01, -9.842470623245e-08, 4.4490e+00, 1.0258e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.180131913753e-01, 1.797693134862e+308, 5.2894e+00, 8.4045e-01, - 1DIAGNOSTIC, 2, -9.224505430174e-01, 1.797693134862e+308, 5.9692e+00, 6.7979e-01, - 1DIAGNOSTIC, 3, -9.268864617177e-01, 1.797693134862e+308, 6.6371e+00, 6.6790e-01, - 1DIAGNOSTIC, 4, -9.304981799539e-01, 1.797693134862e+308, 7.3012e+00, 6.6411e-01, - 1DIAGNOSTIC, 5, -9.330572143709e-01, 1.797693134862e+308, 7.9680e+00, 6.6678e-01, - 1DIAGNOSTIC, 6, -9.353515551447e-01, 1.797693134862e+308, 8.6309e+00, 6.6288e-01, - 1DIAGNOSTIC, 7, -9.372932814388e-01, 1.797693134862e+308, 9.2782e+00, 6.4731e-01, - 1DIAGNOSTIC, 8, -9.392937138268e-01, 1.797693134862e+308, 9.9215e+00, 6.4333e-01, - 1DIAGNOSTIC, 9, -9.409852287654e-01, 1.797693134862e+308, 1.0572e+01, 6.5054e-01, - 1DIAGNOSTIC, 10, -9.425816649023e-01, 1.618991410370e-03, 1.1215e+01, 6.4284e-01, - 1DIAGNOSTIC, 11, -9.439627025264e-01, 1.270834532038e-03, 1.1860e+01, 6.4479e-01, - 1DIAGNOSTIC, 12, -9.451566570131e-01, 1.008198715805e-03, 1.2528e+01, 6.6867e-01, - 1DIAGNOSTIC, 13, -9.460582941742e-01, 8.186267118429e-04, 1.3177e+01, 6.4814e-01, - 1DIAGNOSTIC, 14, -9.468539210880e-01, 6.768950793881e-04, 1.3809e+01, 6.3291e-01, - 1DIAGNOSTIC, 15, -9.475689187396e-01, 5.580706521357e-04, 1.4474e+01, 6.6487e-01, - 1DIAGNOSTIC, 16, -9.480841812303e-01, 4.558742087644e-04, 1.5143e+01, 6.6865e-01, - 1DIAGNOSTIC, 17, -9.485308512355e-01, 3.660263029584e-04, 1.5801e+01, 6.5849e-01, - 1DIAGNOSTIC, 18, -9.488965649589e-01, 2.920174852413e-04, 1.6464e+01, 6.6227e-01, - 1DIAGNOSTIC, 19, -9.492681132160e-01, 2.314281051228e-04, 1.7135e+01, 6.7168e-01, - 1DIAGNOSTIC, 20, -9.497202628218e-01, 1.861853723125e-04, 1.7793e+01, 6.5792e-01, - 1DIAGNOSTIC, 21, -9.500629094189e-01, 1.525352444647e-04, 1.8461e+01, 6.6733e-01, - 1DIAGNOSTIC, 22, -9.503497161749e-01, 1.280206086208e-04, 1.9132e+01, 6.7152e-01, - 1DIAGNOSTIC, 23, -9.505843635885e-01, 1.085820594676e-04, 1.9797e+01, 6.6486e-01, - 1DIAGNOSTIC, 24, -9.507824874207e-01, 9.305378480805e-05, 2.0455e+01, 6.5819e-01, - 1DIAGNOSTIC, 25, -9.509587604832e-01, 8.078055520933e-05, 2.1124e+01, 6.6844e-01, - 1DIAGNOSTIC, 26, -9.511249269966e-01, 6.977582238168e-05, 2.1787e+01, 6.6346e-01, - 1DIAGNOSTIC, 27, -9.512635506606e-01, 5.961767598737e-05, 2.2460e+01, 6.7247e-01, - 1DIAGNOSTIC, 28, -9.513797747926e-01, 4.982041089564e-05, 2.3124e+01, 6.6394e-01, - 1DIAGNOSTIC, 29, -9.514802464816e-01, 4.092931851610e-05, 2.3780e+01, 6.5644e-01, - 1DIAGNOSTIC, 30, -9.515804955459e-01, 3.435574162815e-05, 2.4443e+01, 6.6297e-01, - 1DIAGNOSTIC, 31, -9.516697322413e-01, 2.919683820190e-05, 2.5106e+01, 6.6319e-01, - 1DIAGNOSTIC, 32, -9.517430476821e-01, 2.503945978342e-05, 2.5773e+01, 6.6732e-01, - 1DIAGNOSTIC, 33, -9.518173252175e-01, 2.164550438125e-05, 2.6414e+01, 6.4074e-01, - 1DIAGNOSTIC, 34, -9.518873607072e-01, 1.883601469380e-05, 2.7081e+01, 6.6729e-01, - 1DIAGNOSTIC, 35, -9.519508140981e-01, 1.651844785557e-05, 2.7742e+01, 6.6095e-01, - 1DIAGNOSTIC, 36, -9.519992861834e-01, 1.461628752402e-05, 2.8405e+01, 6.6279e-01, - 1DIAGNOSTIC, 37, -9.520511607416e-01, 1.304486908377e-05, 2.9076e+01, 6.7102e-01, - 1DIAGNOSTIC, 38, -9.521006052245e-01, 1.169278491300e-05, 2.9748e+01, 6.7169e-01, - 1DIAGNOSTIC, 39, -9.521461424454e-01, 1.048414859174e-05, 3.0416e+01, 6.6764e-01, - 1DIAGNOSTIC, 40, -9.521866778396e-01, 9.458811985063e-06, 3.1080e+01, 6.6463e-01, - 1DIAGNOSTIC, 41, -9.522225437203e-01, 8.566287997464e-06, 3.1743e+01, 6.6328e-01, - 1DIAGNOSTIC, 42, -9.522560027728e-01, 7.727770794667e-06, 3.2386e+01, 6.4225e-01, - 1DIAGNOSTIC, 43, -9.522903045887e-01, 7.010976048234e-06, 3.3026e+01, 6.4028e-01, - 1DIAGNOSTIC, 44, -9.523153627504e-01, 6.366928027021e-06, 3.3690e+01, 6.6447e-01, - 1DIAGNOSTIC, 45, -9.523469041902e-01, 5.841568234983e-06, 3.4348e+01, 6.5747e-01, - 1DIAGNOSTIC, 46, -9.523769049904e-01, 5.353521320695e-06, 3.5019e+01, 6.7088e-01, - 1DIAGNOSTIC, 47, -9.524067040992e-01, 4.955117780904e-06, 3.5688e+01, 6.6879e-01, - 1DIAGNOSTIC, 48, -9.524338493066e-01, 4.636726491952e-06, 3.6369e+01, 6.8111e-01, - 1DIAGNOSTIC, 49, -9.524594384662e-01, 4.381890653431e-06, 3.7031e+01, 6.6234e-01, - 1DIAGNOSTIC, 50, -9.524839646005e-01, 4.166034837376e-06, 3.7664e+01, 6.3341e-01, - 1DIAGNOSTIC, 51, -9.525069352436e-01, 3.961883576091e-06, 3.8323e+01, 6.5884e-01, - 1DIAGNOSTIC, 52, -9.525284508931e-01, 3.758156096857e-06, 3.8964e+01, 6.4066e-01, - 1DIAGNOSTIC, 53, -9.525463139617e-01, 3.553247585282e-06, 3.9645e+01, 6.8124e-01, - 1DIAGNOSTIC, 54, -9.525531936780e-01, 3.247105731539e-06, 4.0321e+01, 6.7553e-01, - 1DIAGNOSTIC, 55, -9.525725302058e-01, 2.973109563632e-06, 4.0985e+01, 6.6430e-01, - 1DIAGNOSTIC, 56, -9.525886959760e-01, 2.721896798959e-06, 4.1648e+01, 6.6341e-01, - 1DIAGNOSTIC, 57, -9.526031639298e-01, 2.502048566472e-06, 4.2319e+01, 6.7051e-01, - 1DIAGNOSTIC, 58, -9.526174749428e-01, 2.315619143982e-06, 4.2991e+01, 6.7156e-01, - 1DIAGNOSTIC, 59, -9.526289755599e-01, 2.152836904860e-06, 4.3645e+01, 6.5462e-01, - 1DIAGNOSTIC, 60, -9.526386514526e-01, 2.009255829154e-06, 4.4315e+01, 6.6939e-01, - 1DIAGNOSTIC, 61, -9.526507502809e-01, 1.897784145305e-06, 4.4986e+01, 6.7156e-01, - 1DIAGNOSTIC, 62, -9.526612114083e-01, 1.809835924849e-06, 4.5650e+01, 6.6382e-01, - 1DIAGNOSTIC, 63, -9.526712991003e-01, 1.732917780661e-06, 4.6289e+01, 6.3863e-01, - 1DIAGNOSTIC, 64, -9.526783489076e-01, 1.603894333131e-06, 4.6954e+01, 6.6527e-01, - 1DIAGNOSTIC, 65, -9.526866520509e-01, 1.498918215638e-06, 4.7620e+01, 6.6660e-01, - 1DIAGNOSTIC, 66, -9.526948747831e-01, 1.409375862488e-06, 4.8285e+01, 6.6464e-01, - 1DIAGNOSTIC, 67, -9.527032884525e-01, 1.333944286412e-06, 4.8944e+01, 6.5935e-01, - 1DIAGNOSTIC, 68, -9.527043893345e-01, 1.244918577427e-06, 4.9586e+01, 6.4158e-01, - 1DIAGNOSTIC, 69, -9.527080988236e-01, 1.150056461381e-06, 5.0234e+01, 6.4826e-01, - 1DIAGNOSTIC, 70, -9.527141533255e-01, 1.058103330429e-06, 5.0869e+01, 6.3490e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.095214270530e-01, 1.797693134862e+308, 5.6484e+01, 5.6152e+00, - 1DIAGNOSTIC, 2, -9.128934519897e-01, 1.797693134862e+308, 6.1824e+01, 5.3393e+00, - 1DIAGNOSTIC, 3, -9.164323549100e-01, 1.797693134862e+308, 6.7181e+01, 5.3574e+00, - 1DIAGNOSTIC, 4, -9.197221232710e-01, 1.797693134862e+308, 7.2494e+01, 5.3130e+00, - 1DIAGNOSTIC, 5, -9.226038166706e-01, 1.797693134862e+308, 7.7858e+01, 5.3636e+00, - 1DIAGNOSTIC, 6, -9.250559514363e-01, 1.797693134862e+308, 8.3211e+01, 5.3537e+00, - 1DIAGNOSTIC, 7, -9.270181224049e-01, 1.797693134862e+308, 8.8592e+01, 5.3808e+00, - 1DIAGNOSTIC, 8, -9.286575374835e-01, 1.797693134862e+308, 9.3941e+01, 5.3487e+00, - 1DIAGNOSTIC, 9, -9.300662146663e-01, 1.797693134862e+308, 9.9357e+01, 5.4166e+00, - 1DIAGNOSTIC, 10, -9.311589237792e-01, 1.514175215007e-03, 1.0472e+02, 5.3596e+00, - 1DIAGNOSTIC, 11, -9.321230286615e-01, 1.192544196932e-03, 1.1011e+02, 5.3962e+00, - 1DIAGNOSTIC, 12, -9.329788104820e-01, 9.253098199788e-04, 1.1548e+02, 5.3686e+00, - 1DIAGNOSTIC, 13, -9.337691957244e-01, 7.173191992553e-04, 1.2086e+02, 5.3827e+00, - 1DIAGNOSTIC, 14, -9.345066653996e-01, 5.616049131588e-04, 1.2622e+02, 5.3515e+00, - 1DIAGNOSTIC, 15, -9.351797530903e-01, 4.476027826780e-04, 1.3161e+02, 5.3929e+00, - 1DIAGNOSTIC, 16, -9.357887824921e-01, 3.651562605819e-04, 1.3699e+02, 5.3808e+00, - 1DIAGNOSTIC, 17, -9.363292935500e-01, 3.036475528616e-04, 1.4239e+02, 5.3986e+00, - 1DIAGNOSTIC, 18, -9.368085821991e-01, 2.567475453018e-04, 1.4775e+02, 5.3620e+00, - 1DIAGNOSTIC, 19, -9.372408665433e-01, 2.205367111490e-04, 1.5312e+02, 5.3663e+00, - 1DIAGNOSTIC, 20, -9.376292069166e-01, 1.900251184010e-04, 1.5851e+02, 5.3934e+00, - 1DIAGNOSTIC, 21, -9.379816810931e-01, 1.638421889744e-04, 1.6392e+02, 5.4064e+00, - 1DIAGNOSTIC, 22, -9.383063552141e-01, 1.411149004671e-04, 1.6930e+02, 5.3789e+00, - 1DIAGNOSTIC, 23, -9.386042185485e-01, 1.215979011661e-04, 1.7470e+02, 5.4080e+00, - 1DIAGNOSTIC, 24, -9.388832864006e-01, 1.052357420849e-04, 1.8016e+02, 5.4562e+00, - 1DIAGNOSTIC, 25, -9.391405321966e-01, 9.166036317826e-05, 1.8552e+02, 5.3608e+00, - 1DIAGNOSTIC, 26, -9.393824713758e-01, 8.050839352654e-05, 1.9087e+02, 5.3514e+00, - 1DIAGNOSTIC, 27, -9.396088401660e-01, 7.128528105802e-05, 1.9624e+02, 5.3647e+00, - 1DIAGNOSTIC, 28, -9.398182802653e-01, 6.352586107508e-05, 2.0159e+02, 5.3543e+00, - 1DIAGNOSTIC, 29, -9.400166580249e-01, 5.696688270814e-05, 2.0703e+02, 5.4443e+00, - 1DIAGNOSTIC, 30, -9.402072254930e-01, 5.137890372314e-05, 2.1238e+02, 5.3500e+00, - 1DIAGNOSTIC, 31, -9.403881198994e-01, 4.657092525796e-05, 2.1779e+02, 5.4030e+00, - 1DIAGNOSTIC, 32, -9.405578675147e-01, 4.240109829353e-05, 2.2315e+02, 5.3622e+00, - 1DIAGNOSTIC, 33, -9.407227875809e-01, 3.877973186071e-05, 2.2850e+02, 5.3472e+00, - 1DIAGNOSTIC, 34, -9.408717375524e-01, 3.557030329272e-05, 2.3388e+02, 5.3785e+00, - 1DIAGNOSTIC, 35, -9.410143085981e-01, 3.269111054058e-05, 2.3927e+02, 5.3969e+00, - 1DIAGNOSTIC, 36, -9.411436364956e-01, 3.005117299395e-05, 2.4464e+02, 5.3650e+00, - 1DIAGNOSTIC, 37, -9.412677114984e-01, 2.762799301818e-05, 2.5001e+02, 5.3768e+00, - 1DIAGNOSTIC, 38, -9.413867731186e-01, 2.538254939849e-05, 2.5539e+02, 5.3754e+00, - 1DIAGNOSTIC, 39, -9.414950598414e-01, 2.327570605635e-05, 2.6079e+02, 5.3993e+00, - 1DIAGNOSTIC, 40, -9.415993776028e-01, 2.134918255492e-05, 2.6618e+02, 5.3874e+00, - 1DIAGNOSTIC, 41, -9.417004408596e-01, 1.962296196368e-05, 2.7156e+02, 5.3833e+00, - 1DIAGNOSTIC, 42, -9.417985115344e-01, 1.809406346495e-05, 2.7693e+02, 5.3694e+00, - 1DIAGNOSTIC, 43, -9.418913223228e-01, 1.678047480061e-05, 2.8232e+02, 5.3952e+00, - 1DIAGNOSTIC, 44, -9.419854326327e-01, 1.565260070620e-05, 2.8770e+02, 5.3745e+00, - 1DIAGNOSTIC, 45, -9.420736113481e-01, 1.468736049799e-05, 2.9309e+02, 5.3892e+00, - 1DIAGNOSTIC, 46, -9.421602833605e-01, 1.383611805613e-05, 2.9845e+02, 5.3616e+00, - 1DIAGNOSTIC, 47, -9.422454138545e-01, 1.309849849159e-05, 3.0385e+02, 5.4000e+00, - 1DIAGNOSTIC, 48, -9.423299559973e-01, 1.247562914176e-05, 3.0920e+02, 5.3514e+00, - 1DIAGNOSTIC, 49, -9.424081654388e-01, 1.188788580187e-05, 3.1461e+02, 5.4082e+00, - 1DIAGNOSTIC, 50, -9.424843053665e-01, 1.132958599117e-05, 3.1999e+02, 5.3811e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.081250299932e-01, 1.797693134862e+308, 3.6421e+02, 4.4223e+01, - 1DIAGNOSTIC, 2, -9.096154753030e-01, 1.797693134862e+308, 4.0783e+02, 4.3619e+01, - 1DIAGNOSTIC, 3, -9.114098088104e-01, 1.797693134862e+308, 4.5306e+02, 4.5232e+01, - 1DIAGNOSTIC, 4, -9.132360087861e-01, 1.797693134862e+308, 4.9840e+02, 4.5333e+01, - 1DIAGNOSTIC, 5, -9.150523479880e-01, 1.797693134862e+308, 5.4361e+02, 4.5211e+01, - 1DIAGNOSTIC, 6, -9.167524337321e-01, 1.797693134862e+308, 5.8799e+02, 4.4378e+01, - 1DIAGNOSTIC, 7, -9.182373300238e-01, 1.797693134862e+308, 6.3294e+02, 4.4953e+01, - 1DIAGNOSTIC, 8, -9.195178025611e-01, 1.797693134862e+308, 6.7851e+02, 4.5566e+01, - 1DIAGNOSTIC, 9, -9.205570395599e-01, 1.797693134862e+308, 7.2267e+02, 4.4162e+01, - 1DIAGNOSTIC, 10, -9.215288451325e-01, 9.740655494036e-04, 7.6637e+02, 4.3706e+01, - 1DIAGNOSTIC, 11, -9.223102460724e-01, 8.210011776047e-04, 8.1020e+02, 4.3826e+01, - 1DIAGNOSTIC, 12, -9.230206008455e-01, 6.763519764298e-04, 8.5399e+02, 4.3793e+01, - 1DIAGNOSTIC, 13, -9.236535061587e-01, 5.504476409500e-04, 8.9777e+02, 4.3779e+01, - 1DIAGNOSTIC, 14, -9.242140720547e-01, 4.450158114205e-04, 9.4162e+02, 4.3852e+01, - 1DIAGNOSTIC, 15, -9.247469323122e-01, 3.611834740737e-04, 9.8544e+02, 4.3819e+01, - 1DIAGNOSTIC, 16, -9.252481185769e-01, 2.970096775203e-04, 1.0292e+03, 4.3784e+01, - 1DIAGNOSTIC, 17, -9.257407601885e-01, 2.488136847048e-04, 1.0731e+03, 4.3852e+01, - 1DIAGNOSTIC, 18, -9.262308727257e-01, 2.132628842803e-04, 1.1166e+03, 4.3541e+01, - 1DIAGNOSTIC, 19, -9.267252523241e-01, 1.864916372261e-04, 1.1607e+03, 4.4060e+01, - 1DIAGNOSTIC, 20, -9.271702521754e-01, 1.668689354109e-04, 1.2044e+03, 4.3728e+01, - Elapsed time (stage 2): 1205 - - -Total elapsed time: 1252 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:09 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:09 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:12 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:18 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:21 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:21 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23842 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:22 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:24 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:25 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23949 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:25 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/anat/sub-PNC002_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:28 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:28 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23997 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:28 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24002 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:28 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:33 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:35 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:35 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:36 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:37 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:39 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:40 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:41 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:41 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:43 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/surf/sub-PNC002_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:18:53 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02/sub-PNC002_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC002 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:04 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC002 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:05 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC002 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:05 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24604 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:07 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:07 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc/sub-PNC002_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/xfm/sub-PNC002_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24652 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:09 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:09 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC002_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 68.817 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/logs/proc_func_18-03-2024-11630.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:15 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC002 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-02/QC/sub-PNC002_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/18625_micapipe_proc-func_sub-PNC002_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC002* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 68.850 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC002_ses-02 -========================reprocessing without filter=================== -sub-PNC002_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC002 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC002 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC002 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC002 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:20 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:19:20 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=8 (INT32) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-1_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:21:28 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:23:35 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:23:49 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.19 (mm) at sub-brick 37 -++ Max delta displ in automask = 0.60 (mm) at sub-brick 36 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:36:28 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:36:47 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=8 (INT32) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-2_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:38:59 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:41:09 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC002/ses-03/func/sub-PNC002_ses-03_task-rest_echo-3_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:43:21 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.973 -3.221 2.470 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.9 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -1.621 -5.163 4.273 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.2 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:48:06 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:48:34 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5557a4c846f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [104.102, 48.3661, -118.053] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5557a4afb730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5557a4c9b320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5557a4c87fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [71.8093, 111.5, -129.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5557a4c8de10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5557a5498230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5557a54965c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [104.102, 48.3661, -118.053] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5557a4c8a3f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5557a5fc2450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5557a5494da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [71.8093, 111.5, -129.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5557a4c91360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5557a67bc780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.465157888712e-01, 1.797693134862e+308, 4.3491e-02, 4.3490e-02, - 2DIAGNOSTIC, 2, -6.481195893796e-01, 1.797693134862e+308, 4.4798e-02, 1.3070e-03, - 2DIAGNOSTIC, 3, -6.495265962070e-01, 1.797693134862e+308, 4.6081e-02, 1.2829e-03, - 2DIAGNOSTIC, 4, -6.525748640768e-01, 1.797693134862e+308, 4.7373e-02, 1.2920e-03, - 2DIAGNOSTIC, 5, -6.586882350333e-01, 1.797693134862e+308, 4.8697e-02, 1.3239e-03, - 2DIAGNOSTIC, 6, -6.619494257583e-01, 1.797693134862e+308, 5.0480e-02, 1.7831e-03, - 2DIAGNOSTIC, 7, -6.634841789529e-01, 1.797693134862e+308, 5.1819e-02, 1.3390e-03, - 2DIAGNOSTIC, 8, -6.651233993607e-01, 1.797693134862e+308, 5.3137e-02, 1.3180e-03, - 2DIAGNOSTIC, 9, -6.707845995874e-01, 1.797693134862e+308, 5.4690e-02, 1.5528e-03, - 2DIAGNOSTIC, 10, -6.804891938464e-01, 3.034092231282e-03, 5.6437e-02, 1.7469e-03, - 2DIAGNOSTIC, 11, -6.872965894045e-01, 3.212651866831e-03, 5.8862e-02, 2.4250e-03, - 2DIAGNOSTIC, 12, -6.905894063403e-01, 3.249122833180e-03, 6.1015e-02, 2.1529e-03, - 2DIAGNOSTIC, 13, -6.907463717977e-01, 3.043066239447e-03, 6.2493e-02, 1.4780e-03, - 2DIAGNOSTIC, 14, -6.942655879005e-01, 2.787284404662e-03, 6.3967e-02, 1.4739e-03, - 2DIAGNOSTIC, 15, -6.966975440791e-01, 2.545569219321e-03, 6.5447e-02, 1.4801e-03, - 2DIAGNOSTIC, 16, -7.094369801121e-01, 2.519223263726e-03, 6.6956e-02, 1.5090e-03, - 2DIAGNOSTIC, 17, -7.276586149533e-01, 2.745598624168e-03, 6.8684e-02, 1.7281e-03, - 2DIAGNOSTIC, 18, -7.307253378295e-01, 2.794600805719e-03, 7.0162e-02, 1.4780e-03, - 2DIAGNOSTIC, 19, -7.320853462466e-01, 2.736854496531e-03, 7.1675e-02, 1.5130e-03, - 2DIAGNOSTIC, 20, -7.353130622145e-01, 2.700751035363e-03, 7.3429e-02, 1.7540e-03, - 2DIAGNOSTIC, 21, -7.411155919324e-01, 2.658140479820e-03, 7.5431e-02, 2.0020e-03, - 2DIAGNOSTIC, 22, -7.428000439268e-01, 2.458103652777e-03, 7.7115e-02, 1.6840e-03, - 2DIAGNOSTIC, 23, -7.421079165031e-01, 2.039713493918e-03, 7.8602e-02, 1.4870e-03, - 2DIAGNOSTIC, 24, -7.442626936518e-01, 1.572698715597e-03, 8.0554e-02, 1.9522e-03, - 2DIAGNOSTIC, 25, -7.448107247980e-01, 1.043535615679e-03, 8.2263e-02, 1.7090e-03, - 2DIAGNOSTIC, 26, -7.448770856527e-01, 6.514477502654e-04, 8.3980e-02, 1.7171e-03, - 2DIAGNOSTIC, 27, -7.450896505405e-01, 5.060269515293e-04, 8.5651e-02, 1.6711e-03, - 2DIAGNOSTIC, 28, -7.451969900482e-01, 3.714424560697e-04, 8.7373e-02, 1.7221e-03, - 2DIAGNOSTIC, 29, -7.453228075728e-01, 2.320938444923e-04, 8.8904e-02, 1.5311e-03, - 2DIAGNOSTIC, 30, -7.455790428309e-01, 1.252974900878e-04, 9.0735e-02, 1.8308e-03, - 2DIAGNOSTIC, 31, -7.459662596847e-01, 9.406789064455e-05, 9.2756e-02, 2.0208e-03, - 2DIAGNOSTIC, 32, -7.464291826999e-01, 8.363518887599e-05, 9.4508e-02, 1.7521e-03, - 2DIAGNOSTIC, 33, -7.455841837229e-01, 4.660993710352e-05, 9.5984e-02, 1.4760e-03, - 2DIAGNOSTIC, 34, -7.456394309522e-01, 3.384526441972e-05, 9.7733e-02, 1.7490e-03, - 2DIAGNOSTIC, 35, -7.468374141520e-01, 3.859295720638e-05, 9.9965e-02, 2.2318e-03, - 2DIAGNOSTIC, 36, -7.474567480557e-01, 4.643886935008e-05, 1.0173e-01, 1.7672e-03, - 2DIAGNOSTIC, 37, -7.485260277786e-01, 6.326970562922e-05, 1.0506e-01, 3.3300e-03, - 2DIAGNOSTIC, 38, -7.488963619805e-01, 7.839791536313e-05, 1.0713e-01, 2.0700e-03, - 2DIAGNOSTIC, 39, -7.489486204934e-01, 8.730342843423e-05, 1.0863e-01, 1.4980e-03, - 2DIAGNOSTIC, 40, -7.489968051244e-01, 9.031715892919e-05, 1.1002e-01, 1.3881e-03, - 2DIAGNOSTIC, 41, -7.495304451325e-01, 9.320998319586e-05, 1.1177e-01, 1.7500e-03, - 2DIAGNOSTIC, 42, -7.500086552226e-01, 9.611245056223e-05, 1.1489e-01, 3.1219e-03, - 2DIAGNOSTIC, 43, -7.504334424481e-01, 8.596039887022e-05, 1.1648e-01, 1.5941e-03, - 2DIAGNOSTIC, 44, -7.504822944012e-01, 6.900529947597e-05, 1.1805e-01, 1.5690e-03, - 2DIAGNOSTIC, 45, -7.506259682223e-01, 5.818459059996e-05, 1.1988e-01, 1.8270e-03, - 2DIAGNOSTIC, 46, -7.498067503775e-01, 4.036552580466e-05, 1.2197e-01, 2.0909e-03, - 2DIAGNOSTIC, 47, -7.504586852487e-01, 3.403399063769e-05, 1.2402e-01, 2.0490e-03, - 2DIAGNOSTIC, 48, -7.501689110201e-01, 2.522348007847e-05, 1.2622e-01, 2.1958e-03, - 2DIAGNOSTIC, 49, -7.501698535764e-01, 1.496746839821e-05, 1.2793e-01, 1.7190e-03, - 2DIAGNOSTIC, 50, -7.501701025433e-01, 4.189035550647e-06, 1.2990e-01, 1.9681e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.712951359594e-01, 1.797693134862e+308, 1.7857e-01, 4.8670e-02, - 2DIAGNOSTIC, 2, -3.711295459286e-01, 1.797693134862e+308, 1.8128e-01, 2.7080e-03, - 2DIAGNOSTIC, 3, -3.725170300095e-01, 1.797693134862e+308, 1.8424e-01, 2.9621e-03, - 2DIAGNOSTIC, 4, -3.750104476948e-01, 1.797693134862e+308, 1.8679e-01, 2.5461e-03, - 2DIAGNOSTIC, 5, -3.806068903136e-01, 1.797693134862e+308, 1.8903e-01, 2.2402e-03, - 2DIAGNOSTIC, 6, -3.859711166617e-01, 1.797693134862e+308, 1.9148e-01, 2.4550e-03, - 2DIAGNOSTIC, 7, -3.961029734354e-01, 1.797693134862e+308, 1.9397e-01, 2.4838e-03, - 2DIAGNOSTIC, 8, -4.035505456233e-01, 1.797693134862e+308, 1.9747e-01, 3.5000e-03, - 2DIAGNOSTIC, 9, -4.127571851874e-01, 1.797693134862e+308, 2.0061e-01, 3.1390e-03, - 2DIAGNOSTIC, 10, -4.149362146639e-01, 8.237695782060e-03, 2.0316e-01, 2.5520e-03, - 2DIAGNOSTIC, 11, -4.160215583006e-01, 7.989954913262e-03, 2.0557e-01, 2.4090e-03, - 2DIAGNOSTIC, 12, -4.189289263429e-01, 7.234835393824e-03, 2.0823e-01, 2.6619e-03, - 2DIAGNOSTIC, 13, -4.203570006873e-01, 6.098921753116e-03, 2.1184e-01, 3.6080e-03, - 2DIAGNOSTIC, 14, -4.211418304193e-01, 4.744838232323e-03, 2.1416e-01, 2.3210e-03, - 2DIAGNOSTIC, 15, -4.251283815295e-01, 3.605819109101e-03, 2.1645e-01, 2.2941e-03, - 2DIAGNOSTIC, 16, -4.280077697937e-01, 2.645538696936e-03, 2.1875e-01, 2.2991e-03, - 2DIAGNOSTIC, 17, -4.303876447715e-01, 2.075948692724e-03, 2.2105e-01, 2.2979e-03, - 2DIAGNOSTIC, 18, -4.406970273590e-01, 2.064884688390e-03, 2.2337e-01, 2.3201e-03, - 2DIAGNOSTIC, 19, -4.500190741849e-01, 2.534022032565e-03, 2.2661e-01, 3.2420e-03, - 2DIAGNOSTIC, 20, -4.556082162435e-01, 2.979740163295e-03, 2.2920e-01, 2.5890e-03, - 2DIAGNOSTIC, 21, -4.649173807273e-01, 3.440339169280e-03, 2.3184e-01, 2.6419e-03, - 2DIAGNOSTIC, 22, -4.905747466708e-01, 4.409288347162e-03, 2.3412e-01, 2.2740e-03, - 2DIAGNOSTIC, 23, -5.085987218603e-01, 5.414026675658e-03, 2.3641e-01, 2.2931e-03, - 2DIAGNOSTIC, 24, -5.530925089415e-01, 7.041898607447e-03, 2.3903e-01, 2.6240e-03, - 2DIAGNOSTIC, 25, -5.956120594631e-01, 9.023659690456e-03, 2.4161e-01, 2.5749e-03, - 2DIAGNOSTIC, 26, -6.072868872018e-01, 1.030297094633e-02, 2.4400e-01, 2.3899e-03, - 2DIAGNOSTIC, 27, -6.154879036498e-01, 1.074568896999e-02, 2.4702e-01, 3.0179e-03, - 2DIAGNOSTIC, 28, -6.214406697929e-01, 1.050580875772e-02, 2.5067e-01, 3.6581e-03, - 2DIAGNOSTIC, 29, -6.220581345944e-01, 9.511025897111e-03, 2.5329e-01, 2.6140e-03, - 2DIAGNOSTIC, 30, -6.243070679806e-01, 7.867628854538e-03, 2.5558e-01, 2.2900e-03, - 2DIAGNOSTIC, 31, -6.248154479380e-01, 5.818468648265e-03, 2.5786e-01, 2.2831e-03, - 2DIAGNOSTIC, 32, -6.252680267012e-01, 3.892771276089e-03, 2.6016e-01, 2.2981e-03, - 2DIAGNOSTIC, 33, -6.274043312456e-01, 2.105113896157e-03, 2.6250e-01, 2.3420e-03, - 2DIAGNOSTIC, 34, -6.324535638478e-01, 1.096735577740e-03, 2.6606e-01, 3.5539e-03, - 2DIAGNOSTIC, 35, -6.335383721924e-01, 7.825727104850e-04, 2.6863e-01, 2.5742e-03, - 2DIAGNOSTIC, 36, -6.335872162575e-01, 6.040761640069e-04, 2.7113e-01, 2.4989e-03, - 2DIAGNOSTIC, 37, -6.393647107059e-01, 5.970745577388e-04, 2.7454e-01, 3.4120e-03, - 2DIAGNOSTIC, 38, -6.400929101100e-01, 6.316069409232e-04, 2.7696e-01, 2.4180e-03, - 2DIAGNOSTIC, 39, -6.404445719363e-01, 6.168384501989e-04, 2.7930e-01, 2.3370e-03, - 2DIAGNOSTIC, 40, -6.408361233930e-01, 5.828997426422e-04, 2.8158e-01, 2.2810e-03, - 2DIAGNOSTIC, 41, -6.420111126910e-01, 5.197656426881e-04, 2.8424e-01, 2.6650e-03, - 2DIAGNOSTIC, 42, -6.423702723837e-01, 4.204808007335e-04, 2.8697e-01, 2.7289e-03, - 2DIAGNOSTIC, 43, -6.431831936195e-01, 3.229204433166e-04, 2.9042e-01, 3.4480e-03, - 2DIAGNOSTIC, 44, -6.438484305688e-01, 2.721446629759e-04, 2.9292e-01, 2.4981e-03, - 2DIAGNOSTIC, 45, -6.450906506415e-01, 2.273293229546e-04, 2.9533e-01, 2.4130e-03, - 2DIAGNOSTIC, 46, -6.459850002483e-01, 1.722568319129e-04, 2.9765e-01, 2.3232e-03, - 2DIAGNOSTIC, 47, -6.466295058976e-01, 1.772321528910e-04, 3.0067e-01, 3.0119e-03, - 2DIAGNOSTIC, 48, -6.467460625517e-01, 1.746937336544e-04, 3.0336e-01, 2.6941e-03, - 2DIAGNOSTIC, 49, -6.468407685063e-01, 1.606643667893e-04, 3.0582e-01, 2.4569e-03, - 2DIAGNOSTIC, 50, -6.498111320492e-01, 1.674887444274e-04, 3.0935e-01, 3.5369e-03, - 2DIAGNOSTIC, 51, -6.504576798249e-01, 1.760298827205e-04, 3.1180e-01, 2.4471e-03, - 2DIAGNOSTIC, 52, -6.520930318202e-01, 1.877649857059e-04, 3.1449e-01, 2.6929e-03, - 2DIAGNOSTIC, 53, -6.529531267371e-01, 1.978356922786e-04, 3.1686e-01, 2.3620e-03, - 2DIAGNOSTIC, 54, -6.560918816239e-01, 2.252769705038e-04, 3.1923e-01, 2.3711e-03, - 2DIAGNOSTIC, 55, -6.592576932248e-01, 2.706751389535e-04, 3.2162e-01, 2.3930e-03, - 2DIAGNOSTIC, 56, -6.615687362588e-01, 3.172459867822e-04, 3.2399e-01, 2.3730e-03, - 2DIAGNOSTIC, 57, -6.697095353071e-01, 4.115845971999e-04, 3.2770e-01, 3.7110e-03, - 2DIAGNOSTIC, 58, -6.738458607475e-01, 4.991118699491e-04, 3.3043e-01, 2.7230e-03, - 2DIAGNOSTIC, 59, -6.739868893416e-01, 5.364432016906e-04, 3.3383e-01, 3.4020e-03, - 2DIAGNOSTIC, 60, -6.739455453044e-01, 5.469314733788e-04, 3.3625e-01, 2.4221e-03, - 2DIAGNOSTIC, 61, -6.740642619086e-01, 5.110551750746e-04, 3.3869e-01, 2.4400e-03, - 2DIAGNOSTIC, 62, -6.741452374924e-01, 4.408862343460e-04, 3.4112e-01, 2.4309e-03, - 2DIAGNOSTIC, 63, -6.744272043027e-01, 3.393983281442e-04, 3.4356e-01, 2.4431e-03, - 2DIAGNOSTIC, 64, -6.742311290176e-01, 2.327945545207e-04, 3.4704e-01, 3.4778e-03, - 2DIAGNOSTIC, 65, -6.750949734667e-01, 1.398831807768e-04, 3.4954e-01, 2.4951e-03, - 2DIAGNOSTIC, 66, -6.751754156407e-01, 5.357932025989e-05, 3.5799e-01, 8.4560e-03, - 2DIAGNOSTIC, 67, -6.751754100428e-01, 2.522220030185e-05, 3.6050e-01, 2.5110e-03, - 2DIAGNOSTIC, 68, -6.751754258983e-01, 2.591713403853e-05, 3.6306e-01, 2.5530e-03, - 2DIAGNOSTIC, 69, -6.751754527043e-01, 2.519855520068e-05, 3.6562e-01, 2.5661e-03, - 2DIAGNOSTIC, 70, -6.751754980672e-01, 2.175547714729e-05, 3.6812e-01, 2.4981e-03, - 2DIAGNOSTIC, 71, -6.751755748803e-01, 1.716736152894e-05, 3.7056e-01, 2.4350e-03, - 2DIAGNOSTIC, 72, -6.751757046841e-01, 1.170736432446e-05, 3.7302e-01, 2.4669e-03, - 2DIAGNOSTIC, 73, -6.751759237925e-01, 7.368736062881e-06, 3.7546e-01, 2.4371e-03, - 2DIAGNOSTIC, 74, -6.751762931293e-01, 1.047705556211e-06, 3.7795e-01, 2.4891e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.989982087368e-01, 1.797693134862e+308, 4.4906e-01, 7.1106e-02, - 2DIAGNOSTIC, 2, -4.994894810252e-01, 1.797693134862e+308, 4.6139e-01, 1.2332e-02, - 2DIAGNOSTIC, 3, -5.002966620122e-01, 1.797693134862e+308, 4.7359e-01, 1.2198e-02, - 2DIAGNOSTIC, 4, -5.015116336582e-01, 1.797693134862e+308, 4.8570e-01, 1.2115e-02, - 2DIAGNOSTIC, 5, -5.019873265535e-01, 1.797693134862e+308, 4.9835e-01, 1.2649e-02, - 2DIAGNOSTIC, 6, -5.020692568903e-01, 1.797693134862e+308, 5.1549e-01, 1.7137e-02, - 2DIAGNOSTIC, 7, -5.020955805088e-01, 1.797693134862e+308, 5.2743e-01, 1.1939e-02, - 2DIAGNOSTIC, 8, -5.023131743361e-01, 1.797693134862e+308, 5.4077e-01, 1.3348e-02, - 2DIAGNOSTIC, 9, -5.023509554959e-01, 1.797693134862e+308, 5.5402e-01, 1.3245e-02, - 2DIAGNOSTIC, 10, -5.024194558442e-01, 4.353247388339e-04, 5.6952e-01, 1.5498e-02, - 2DIAGNOSTIC, 11, -5.024901596535e-01, 2.914761216102e-04, 5.8171e-01, 1.2192e-02, - 2DIAGNOSTIC, 12, -5.025407965603e-01, 1.712291096509e-04, 6.0105e-01, 1.9337e-02, - 2DIAGNOSTIC, 13, -5.025979008688e-01, 9.060630198303e-05, 6.1576e-01, 1.4712e-02, - 2DIAGNOSTIC, 14, -5.026064718555e-01, 6.246657326291e-05, 6.3090e-01, 1.5139e-02, - 2DIAGNOSTIC, 15, -5.025927490084e-01, 5.008188427821e-05, 6.4453e-01, 1.3633e-02, - 2DIAGNOSTIC, 16, -5.026013344754e-01, 3.813476940523e-05, 6.5665e-01, 1.2124e-02, - 2DIAGNOSTIC, 17, -5.025903148664e-01, 2.456903275636e-05, 6.7089e-01, 1.4234e-02, - 2DIAGNOSTIC, 18, -5.025924923376e-01, 1.732717176135e-05, 6.8478e-01, 1.3896e-02, - 2DIAGNOSTIC, 19, -5.026061135259e-01, 1.091955798545e-05, 6.9916e-01, 1.4381e-02, - 2DIAGNOSTIC, 20, -5.026442802014e-01, 7.289895481689e-06, 7.1320e-01, 1.4035e-02, - 2DIAGNOSTIC, 21, -5.027006639365e-01, 6.859527346720e-06, 7.2717e-01, 1.3970e-02, - 2DIAGNOSTIC, 22, -5.027037261138e-01, 7.285867276399e-06, 7.4107e-01, 1.3905e-02, - 2DIAGNOSTIC, 23, -5.026967493101e-01, 8.384701112731e-06, 7.5622e-01, 1.5149e-02, - 2DIAGNOSTIC, 24, -5.027145971687e-01, 9.384521573869e-06, 7.7040e-01, 1.4179e-02, - 2DIAGNOSTIC, 25, -5.027085342019e-01, 9.059068800561e-06, 7.8654e-01, 1.6135e-02, - 2DIAGNOSTIC, 26, -5.027215096597e-01, 8.490027454365e-06, 8.0075e-01, 1.4214e-02, - 2DIAGNOSTIC, 27, -5.027190525352e-01, 7.003389837834e-06, 8.1317e-01, 1.2419e-02, - 2DIAGNOSTIC, 28, -5.027265402161e-01, 5.292461697004e-06, 8.2520e-01, 1.2029e-02, - 2DIAGNOSTIC, 29, -5.027330901917e-01, 3.688209116469e-06, 8.3718e-01, 1.1977e-02, - 2DIAGNOSTIC, 30, -5.027257572061e-01, 2.492954012862e-06, 8.4889e-01, 1.1714e-02, - 2DIAGNOSTIC, 31, -5.027324163330e-01, 2.396458422357e-06, 8.6106e-01, 1.2167e-02, - 2DIAGNOSTIC, 32, -5.027366549100e-01, 2.307273390983e-06, 8.7407e-01, 1.3016e-02, - 2DIAGNOSTIC, 33, -5.027036429837e-01, 1.401781041216e-06, 8.8545e-01, 1.1379e-02, - 2DIAGNOSTIC, 34, -5.027549943573e-01, 1.681069278989e-06, 8.9651e-01, 1.1059e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.151999097817e-01, 1.797693134862e+308, 1.0648e+00, 1.6825e-01, - Elapsed time (stage 0): 1.0933e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -1.024677665806e+00, 1.797693134862e+308, 3.7674e-02, 3.7674e-02, - 2DIAGNOSTIC, 2, -1.026380072060e+00, 1.797693134862e+308, 3.9013e-02, 1.3390e-03, - 2DIAGNOSTIC, 3, -1.028894593588e+00, 1.797693134862e+308, 4.0449e-02, 1.4360e-03, - 2DIAGNOSTIC, 4, -1.030919988574e+00, 1.797693134862e+308, 4.1793e-02, 1.3440e-03, - 2DIAGNOSTIC, 5, -1.032557617405e+00, 1.797693134862e+308, 4.3131e-02, 1.3380e-03, - 2DIAGNOSTIC, 6, -1.034190927995e+00, 1.797693134862e+308, 4.4524e-02, 1.3928e-03, - 2DIAGNOSTIC, 7, -1.035845472294e+00, 1.797693134862e+308, 4.5925e-02, 1.4012e-03, - 2DIAGNOSTIC, 8, -1.035957482434e+00, 1.797693134862e+308, 4.7146e-02, 1.2209e-03, - 2DIAGNOSTIC, 9, -1.036687389015e+00, 1.797693134862e+308, 4.8352e-02, 1.2059e-03, - 2DIAGNOSTIC, 10, -1.039973433295e+00, 8.792079754368e-04, 4.9739e-02, 1.3869e-03, - 2DIAGNOSTIC, 11, -1.043500811862e+00, 8.205301698923e-04, 5.1144e-02, 1.4050e-03, - 2DIAGNOSTIC, 12, -1.051419074691e+00, 9.157479173419e-04, 5.2465e-02, 1.3211e-03, - 2DIAGNOSTIC, 13, -1.061749531657e+00, 1.180594221101e-03, 5.3969e-02, 1.5039e-03, - 2DIAGNOSTIC, 14, -1.084446787503e+00, 1.776973050287e-03, 5.5496e-02, 1.5271e-03, - 2DIAGNOSTIC, 15, -1.097554507790e+00, 2.385959175332e-03, 5.7572e-02, 2.0759e-03, - 2DIAGNOSTIC, 16, -1.102824092056e+00, 2.812277593543e-03, 5.9083e-02, 1.5111e-03, - 2DIAGNOSTIC, 17, -1.104478290382e+00, 2.984390238177e-03, 6.0392e-02, 1.3089e-03, - 2DIAGNOSTIC, 18, -1.109189631791e+00, 2.933474821807e-03, 6.1904e-02, 1.5121e-03, - 2DIAGNOSTIC, 19, -1.121254338539e+00, 2.790595797312e-03, 6.3450e-02, 1.5459e-03, - 2DIAGNOSTIC, 20, -1.122147919426e+00, 2.454612568407e-03, 6.5016e-02, 1.5662e-03, - 2DIAGNOSTIC, 21, -1.125946981457e+00, 2.021386672948e-03, 6.6565e-02, 1.5490e-03, - 2DIAGNOSTIC, 22, -1.129214584678e+00, 1.579539383873e-03, 6.7945e-02, 1.3800e-03, - 2DIAGNOSTIC, 23, -1.138026766537e+00, 1.245002087455e-03, 6.9259e-02, 1.3139e-03, - 2DIAGNOSTIC, 24, -1.149699990780e+00, 1.195198626824e-03, 7.1934e-02, 2.6748e-03, - 2DIAGNOSTIC, 25, -1.151313886164e+00, 1.190030095394e-03, 7.3497e-02, 1.5638e-03, - 2DIAGNOSTIC, 26, -1.152187763331e+00, 1.139640788222e-03, 7.5107e-02, 1.6100e-03, - 2DIAGNOSTIC, 27, -1.152902005602e+00, 1.010318403223e-03, 7.6469e-02, 1.3621e-03, - 2DIAGNOSTIC, 28, -1.152415252403e+00, 8.310757055308e-04, 7.7808e-02, 1.3390e-03, - 2DIAGNOSTIC, 29, -1.153546176523e+00, 7.045189329618e-04, 7.9168e-02, 1.3599e-03, - 2DIAGNOSTIC, 30, -1.154863308575e+00, 5.394938016268e-04, 8.0597e-02, 1.4288e-03, - 2DIAGNOSTIC, 31, -1.156377360046e+00, 3.807132514983e-04, 8.2080e-02, 1.4830e-03, - 2DIAGNOSTIC, 32, -1.155932227884e+00, 2.185646153753e-04, 8.3627e-02, 1.5471e-03, - 2DIAGNOSTIC, 33, -1.154221915475e+00, 1.000795119317e-04, 8.4944e-02, 1.3168e-03, - 2DIAGNOSTIC, 34, -1.154608277232e+00, 7.157769654365e-05, 8.6291e-02, 1.3471e-03, - 2DIAGNOSTIC, 35, -1.157336716468e+00, 6.946658714932e-05, 8.7846e-02, 1.5550e-03, - 2DIAGNOSTIC, 36, -1.158676580341e+00, 7.586039021248e-05, 8.9507e-02, 1.6608e-03, - 2DIAGNOSTIC, 37, -1.157927836661e+00, 7.493629996077e-05, 9.0853e-02, 1.3461e-03, - 2DIAGNOSTIC, 38, -1.157548071240e+00, 6.195785759427e-05, 9.2711e-02, 1.8580e-03, - 2DIAGNOSTIC, 39, -1.158169851566e+00, 5.533186697023e-05, 9.4244e-02, 1.5330e-03, - 2DIAGNOSTIC, 40, -1.157247732520e+00, 4.534983726454e-05, 9.5613e-02, 1.3690e-03, - 2DIAGNOSTIC, 41, -1.156331311544e+00, 3.534988583479e-05, 9.6984e-02, 1.3711e-03, - 2DIAGNOSTIC, 42, -1.157803086126e+00, 2.962526804398e-05, 9.8633e-02, 1.6491e-03, - 2DIAGNOSTIC, 43, -1.157031678807e+00, 6.542694383067e-06, 1.0062e-01, 1.9820e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.240759399764e-01, 1.797693134862e+308, 1.4850e-01, 4.7882e-02, - 2DIAGNOSTIC, 2, -7.244826031993e-01, 1.797693134862e+308, 1.5124e-01, 2.7399e-03, - 2DIAGNOSTIC, 3, -7.267129827282e-01, 1.797693134862e+308, 1.5389e-01, 2.6491e-03, - 2DIAGNOSTIC, 4, -7.301434067990e-01, 1.797693134862e+308, 1.5645e-01, 2.5668e-03, - 2DIAGNOSTIC, 5, -7.339242802982e-01, 1.797693134862e+308, 1.5892e-01, 2.4681e-03, - 2DIAGNOSTIC, 6, -7.381684436118e-01, 1.797693134862e+308, 1.6139e-01, 2.4641e-03, - 2DIAGNOSTIC, 7, -7.456371202242e-01, 1.797693134862e+308, 1.6422e-01, 2.8319e-03, - 2DIAGNOSTIC, 8, -7.516427662331e-01, 1.797693134862e+308, 1.6729e-01, 3.0692e-03, - 2DIAGNOSTIC, 9, -7.665271763121e-01, 1.797693134862e+308, 1.6956e-01, 2.2709e-03, - 2DIAGNOSTIC, 10, -7.722561385417e-01, 4.233498963683e-03, 1.7336e-01, 3.8040e-03, - 2DIAGNOSTIC, 11, -7.743158912539e-01, 4.330407328449e-03, 1.7589e-01, 2.5239e-03, - 2DIAGNOSTIC, 12, -7.764330831058e-01, 4.106951915573e-03, 1.7837e-01, 2.4869e-03, - 2DIAGNOSTIC, 13, -7.775546249843e-01, 3.643795008759e-03, 1.8118e-01, 2.8040e-03, - 2DIAGNOSTIC, 14, -7.801055043283e-01, 3.074614381703e-03, 1.8496e-01, 3.7811e-03, - 2DIAGNOSTIC, 15, -7.805938382094e-01, 2.408495202822e-03, 1.8747e-01, 2.5129e-03, - 2DIAGNOSTIC, 16, -7.826680220492e-01, 1.758272690673e-03, 1.8996e-01, 2.4881e-03, - 2DIAGNOSTIC, 17, -7.856909975958e-01, 1.258148197381e-03, 1.9247e-01, 2.5091e-03, - 2DIAGNOSTIC, 18, -7.888089640383e-01, 8.808115525297e-04, 1.9497e-01, 2.4979e-03, - 2DIAGNOSTIC, 19, -7.919617528176e-01, 8.146102759490e-04, 1.9784e-01, 2.8782e-03, - 2DIAGNOSTIC, 20, -7.938474849530e-01, 8.209515751518e-04, 2.0101e-01, 3.1691e-03, - 2DIAGNOSTIC, 21, -7.953466248336e-01, 8.131407427019e-04, 2.0366e-01, 2.6481e-03, - 2DIAGNOSTIC, 22, -7.960989257509e-01, 7.782857894720e-04, 2.0639e-01, 2.7270e-03, - 2DIAGNOSTIC, 23, -7.977894146443e-01, 7.179599563300e-04, 2.0936e-01, 2.9769e-03, - 2DIAGNOSTIC, 24, -7.982414343099e-01, 6.416789653240e-04, 2.1406e-01, 4.6971e-03, - 2DIAGNOSTIC, 25, -7.981691239714e-01, 5.178224541232e-04, 2.1761e-01, 3.5460e-03, - 2DIAGNOSTIC, 26, -7.981523853287e-01, 3.845544962138e-04, 2.2021e-01, 2.5980e-03, - 2DIAGNOSTIC, 27, -7.982376716160e-01, 2.673365470376e-04, 2.2283e-01, 2.6262e-03, - 2DIAGNOSTIC, 28, -7.983539886517e-01, 1.751543556712e-04, 2.2552e-01, 2.6920e-03, - 2DIAGNOSTIC, 29, -7.984302280275e-01, 1.135417323578e-04, 2.2824e-01, 2.7158e-03, - 2DIAGNOSTIC, 30, -7.983930817186e-01, 6.809699575850e-05, 2.3099e-01, 2.7459e-03, - 2DIAGNOSTIC, 31, -7.984655626019e-01, 3.805354156061e-05, 2.3354e-01, 2.5589e-03, - 2DIAGNOSTIC, 32, -7.984912389568e-01, 1.480766094092e-05, 2.3638e-01, 2.8369e-03, - 2DIAGNOSTIC, 33, -7.985480273583e-01, 1.089875706541e-05, 2.3919e-01, 2.8119e-03, - 2DIAGNOSTIC, 34, -7.985539530957e-01, 1.122991881764e-05, 2.4268e-01, 3.4819e-03, - 2DIAGNOSTIC, 35, -7.986250479521e-01, 1.059996593333e-05, 2.4587e-01, 3.1989e-03, - 2DIAGNOSTIC, 36, -7.986639023756e-01, 9.291241146292e-06, 2.4841e-01, 2.5320e-03, - 2DIAGNOSTIC, 37, -7.986688329448e-01, 8.107131495783e-06, 2.5091e-01, 2.5029e-03, - 2DIAGNOSTIC, 38, -7.986782147870e-01, 7.495642435552e-06, 2.5341e-01, 2.4991e-03, - 2DIAGNOSTIC, 39, -7.989110615433e-01, 9.193158420549e-06, 2.5623e-01, 2.8231e-03, - 2DIAGNOSTIC, 40, -7.994648400766e-01, 1.463247094267e-05, 2.5972e-01, 3.4881e-03, - 2DIAGNOSTIC, 41, -7.995081071783e-01, 1.938759685457e-05, 2.6255e-01, 2.8269e-03, - 2DIAGNOSTIC, 42, -7.995418825108e-01, 2.272574795303e-05, 2.6603e-01, 3.4800e-03, - 2DIAGNOSTIC, 43, -7.995331447512e-01, 2.429021458764e-05, 2.6853e-01, 2.5020e-03, - 2DIAGNOSTIC, 44, -7.995637126708e-01, 2.378391374700e-05, 2.7135e-01, 2.8231e-03, - 2DIAGNOSTIC, 45, -7.995937852029e-01, 2.181979734404e-05, 2.7388e-01, 2.5260e-03, - 2DIAGNOSTIC, 46, -7.996494008079e-01, 1.867225923937e-05, 2.7685e-01, 2.9771e-03, - 2DIAGNOSTIC, 47, -7.998002661186e-01, 1.522353327546e-05, 2.8072e-01, 3.8650e-03, - 2DIAGNOSTIC, 48, -7.998329816281e-01, 1.082913987618e-05, 2.8374e-01, 3.0179e-03, - 2DIAGNOSTIC, 49, -7.998274421000e-01, 7.226680085910e-06, 2.8681e-01, 3.0689e-03, - 2DIAGNOSTIC, 50, -8.000562680180e-01, 8.823968785970e-06, 2.9053e-01, 3.7200e-03, - 2DIAGNOSTIC, 51, -8.000900723339e-01, 1.006246280659e-05, 2.9312e-01, 2.5961e-03, - 2DIAGNOSTIC, 52, -8.001125089754e-01, 1.073944323302e-05, 2.9610e-01, 2.9759e-03, - 2DIAGNOSTIC, 53, -8.000905828500e-01, 1.022954692512e-05, 2.9874e-01, 2.6419e-03, - 2DIAGNOSTIC, 54, -8.001004924886e-01, 9.106075134390e-06, 3.0205e-01, 3.3090e-03, - 2DIAGNOSTIC, 55, -8.001326845969e-01, 7.594867547044e-06, 3.0465e-01, 2.6050e-03, - 2DIAGNOSTIC, 56, -8.001358863568e-01, 5.802405005945e-06, 3.0725e-01, 2.6002e-03, - 2DIAGNOSTIC, 57, -8.001415368419e-01, 4.582376379871e-06, 3.0983e-01, 2.5721e-03, - 2DIAGNOSTIC, 58, -8.001126431186e-01, 3.068876135926e-06, 3.1238e-01, 2.5549e-03, - 2DIAGNOSTIC, 59, -8.001640391287e-01, 1.616102076080e-06, 3.1500e-01, 2.6219e-03, - 2DIAGNOSTIC, 60, -8.002086352832e-01, 1.735693068942e-06, 3.1859e-01, 3.5858e-03, - 2DIAGNOSTIC, 61, -8.002889630476e-01, 2.399598393588e-06, 3.2221e-01, 3.6170e-03, - 2DIAGNOSTIC, 62, -8.002222758602e-01, 2.606281695156e-06, 3.2474e-01, 2.5301e-03, - 2DIAGNOSTIC, 63, -8.002225594611e-01, 2.504762110712e-06, 3.2722e-01, 2.4879e-03, - 2DIAGNOSTIC, 64, -8.002276903270e-01, 2.292661535969e-06, 3.2967e-01, 2.4450e-03, - 2DIAGNOSTIC, 65, -8.002378883619e-01, 2.133819744950e-06, 3.3430e-01, 4.6310e-03, - 2DIAGNOSTIC, 66, -8.002379017865e-01, 1.833416549777e-06, 3.3700e-01, 2.6982e-03, - 2DIAGNOSTIC, 67, -8.002379578103e-01, 1.460598792604e-06, 3.3970e-01, 2.7061e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.930183398066e-01, 1.797693134862e+308, 4.0932e-01, 6.9620e-02, - 2DIAGNOSTIC, 2, -5.933220000696e-01, 1.797693134862e+308, 4.2150e-01, 1.2172e-02, - 2DIAGNOSTIC, 3, -5.937082573443e-01, 1.797693134862e+308, 4.3555e-01, 1.4053e-02, - 2DIAGNOSTIC, 4, -5.941215302511e-01, 1.797693134862e+308, 4.4736e-01, 1.1814e-02, - 2DIAGNOSTIC, 5, -5.945117224013e-01, 1.797693134862e+308, 4.6005e-01, 1.2683e-02, - 2DIAGNOSTIC, 6, -5.947828748091e-01, 1.797693134862e+308, 4.7533e-01, 1.5283e-02, - 2DIAGNOSTIC, 7, -5.949350931713e-01, 1.797693134862e+308, 4.8690e-01, 1.1571e-02, - 2DIAGNOSTIC, 8, -5.951105906570e-01, 1.797693134862e+308, 4.9938e-01, 1.2477e-02, - 2DIAGNOSTIC, 9, -5.952727085989e-01, 1.797693134862e+308, 5.1265e-01, 1.3273e-02, - 2DIAGNOSTIC, 10, -5.953623201735e-01, 2.641156173475e-04, 5.2803e-01, 1.5377e-02, - 2DIAGNOSTIC, 11, -5.953701051478e-01, 2.030759057025e-04, 5.4153e-01, 1.3500e-02, - 2DIAGNOSTIC, 12, -5.954013483130e-01, 1.475970633069e-04, 5.5334e-01, 1.1812e-02, - 2DIAGNOSTIC, 13, -5.956938862002e-01, 1.123021841786e-04, 5.6800e-01, 1.4656e-02, - 2DIAGNOSTIC, 14, -5.959518977475e-01, 9.441008994709e-05, 5.8692e-01, 1.8924e-02, - 2DIAGNOSTIC, 15, -5.959753115274e-01, 8.339916975623e-05, 5.9856e-01, 1.1643e-02, - 2DIAGNOSTIC, 16, -5.961148486984e-01, 7.878569336733e-05, 6.1030e-01, 1.1738e-02, - 2DIAGNOSTIC, 17, -5.962802524921e-01, 7.649228994690e-05, 6.2216e-01, 1.1855e-02, - 2DIAGNOSTIC, 18, -5.964132579284e-01, 7.542457516504e-05, 6.3385e-01, 1.1698e-02, - 2DIAGNOSTIC, 19, -5.964853965268e-01, 7.335527420665e-05, 6.4541e-01, 1.1559e-02, - 2DIAGNOSTIC, 20, -5.965669814784e-01, 6.904596583367e-05, 6.5714e-01, 1.1729e-02, - 2DIAGNOSTIC, 21, -5.967171678078e-01, 6.255738888980e-05, 6.7156e-01, 1.4413e-02, - 2DIAGNOSTIC, 22, -5.970865205519e-01, 5.941658497705e-05, 6.8753e-01, 1.5978e-02, - 2DIAGNOSTIC, 23, -5.970995118116e-01, 5.714755095575e-05, 7.0093e-01, 1.3402e-02, - 2DIAGNOSTIC, 24, -5.971035243189e-01, 5.521538317349e-05, 7.1348e-01, 1.2546e-02, - 2DIAGNOSTIC, 25, -5.971053147810e-01, 4.893627557527e-05, 7.2804e-01, 1.4563e-02, - 2DIAGNOSTIC, 26, -5.971094897752e-01, 4.118671240830e-05, 7.4010e-01, 1.2051e-02, - 2DIAGNOSTIC, 27, -5.971105719063e-01, 3.304085861384e-05, 7.5216e-01, 1.2063e-02, - 2DIAGNOSTIC, 28, -5.971230532622e-01, 2.494856979160e-05, 7.6404e-01, 1.1877e-02, - 2DIAGNOSTIC, 29, -5.971339478867e-01, 1.661678825472e-05, 7.7889e-01, 1.4855e-02, - 2DIAGNOSTIC, 30, -5.971491783738e-01, 8.916298631013e-06, 7.9067e-01, 1.1778e-02, - 2DIAGNOSTIC, 31, -5.971659917232e-01, 3.377334749678e-06, 8.0575e-01, 1.5079e-02, - 2DIAGNOSTIC, 32, -5.971816954219e-01, 3.694166341522e-06, 8.2627e-01, 2.0522e-02, - 2DIAGNOSTIC, 33, -5.971838275015e-01, 3.950376176010e-06, 8.3875e-01, 1.2476e-02, - 2DIAGNOSTIC, 34, -5.971890173908e-01, 4.039059200926e-06, 8.5247e-01, 1.3720e-02, - 2DIAGNOSTIC, 35, -5.971959860634e-01, 3.945508239515e-06, 8.6678e-01, 1.4312e-02, - 2DIAGNOSTIC, 36, -5.971987630226e-01, 3.657930260373e-06, 8.8254e-01, 1.5764e-02, - 2DIAGNOSTIC, 37, -5.971993671241e-01, 3.140889767231e-06, 8.9744e-01, 1.4903e-02, - 2DIAGNOSTIC, 38, -5.971985286226e-01, 2.582105022037e-06, 9.1096e-01, 1.3512e-02, - 2DIAGNOSTIC, 39, -5.971986277419e-01, 2.019972494025e-06, 9.2289e-01, 1.1936e-02, - 2DIAGNOSTIC, 40, -5.971976931896e-01, 1.536789387697e-06, 9.3642e-01, 1.3527e-02, - 2DIAGNOSTIC, 41, -5.971987360044e-01, 1.209531365242e-06, 9.4972e-01, 1.3305e-02, - 2DIAGNOSTIC, 42, -5.971992701775e-01, 1.041550957977e-06, 9.6303e-01, 1.3308e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.913025644627e-01, 1.797693134862e+308, 1.1500e+00, 1.8692e-01, - Elapsed time (stage 1): 1.1724e+00 - - -Total elapsed time: 2.2668e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:48:38 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 36 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 100 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 85.20% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 85.20% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[16193 8347 4557 31492 478 703 1567 179 1034 453 234 360 - 0 925 461 1048 1733 453 0 503 0 761 0 0 - 314 0 0 0 0 0 0 0 0 0 0 0] -[114406 92651 32848 17643 30966 28849 12814 16789 12543 2662 - 10426 12158 1780 3064 5317 5928 1100 1189 946 971 - 464 871 1079 635 298 546 927 0 566 400 - 182 335 399 411 203 218] -[ 0 0 0 227 0 629 493 0 11919 857 0 10146 - 0 12564 9645 0 0 6870 0 0 211 407 0 0 - 0 0 880 11512 0 5542 0 10812 735 0 286 0] -[ 1074 413 6613 9475 0 178 10491 2968 839 24590 - 1991 133933 9053 709 0 1046 272 12291 1424 1977 - 1469 10966 591 1053 228 222 5102 1596 948 188 - 676 81459 11692 1366 3628 776] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:56:52 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 05:56:57 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:41 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:41 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:42 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:52 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:00:55 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC002 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:01:08 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:01:32 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:03:18 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:03:19 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:04:38 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:04:38 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55bc60078d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [72.2585, 111.949, -129.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55bc5feef730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4ce1e6a010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55bc6007c020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.551, 48.8152, -118.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55bc600820c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4cde7ab010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55bc60092840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [72.2585, 111.949, -129.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55bc6007e890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4cd9ad7010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55bc600963e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.551, 48.8152, -118.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55bc60085130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4cd6418010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.052004243822e-01, 1.797693134862e+308, 2.2355e-01, 2.2355e-01, - 2DIAGNOSTIC, 2, -4.063434350889e-01, 1.797693134862e+308, 2.2488e-01, 1.3239e-03, - 2DIAGNOSTIC, 3, -4.086886659250e-01, 1.797693134862e+308, 2.2617e-01, 1.2898e-03, - 2DIAGNOSTIC, 4, -4.147863631841e-01, 1.797693134862e+308, 2.2752e-01, 1.3540e-03, - 2DIAGNOSTIC, 5, -4.289861301293e-01, 1.797693134862e+308, 2.2893e-01, 1.4050e-03, - 2DIAGNOSTIC, 6, -4.382432297037e-01, 1.797693134862e+308, 2.3026e-01, 1.3311e-03, - 2DIAGNOSTIC, 7, -4.621118762163e-01, 1.797693134862e+308, 2.3167e-01, 1.4119e-03, - 2DIAGNOSTIC, 8, -4.881633021563e-01, 1.797693134862e+308, 2.3359e-01, 1.9240e-03, - 2DIAGNOSTIC, 9, -5.505928636720e-01, 1.797693134862e+308, 2.3596e-01, 2.3668e-03, - 2DIAGNOSTIC, 10, -5.521214333502e-01, 2.198737911398e-02, 2.3769e-01, 1.7269e-03, - 2DIAGNOSTIC, 11, -5.523854541659e-01, 2.216465810153e-02, 2.3987e-01, 2.1789e-03, - 2DIAGNOSTIC, 12, -5.524886095023e-01, 2.045007576926e-02, 2.4144e-01, 1.5769e-03, - 2DIAGNOSTIC, 13, -5.525154231361e-01, 1.729965020743e-02, 2.4334e-01, 1.8919e-03, - 2DIAGNOSTIC, 14, -5.525315606044e-01, 1.332247314887e-02, 2.4487e-01, 1.5340e-03, - 2DIAGNOSTIC, 15, -5.525578747688e-01, 9.301151680716e-03, 2.4679e-01, 1.9159e-03, - 2DIAGNOSTIC, 16, -5.525646337483e-01, 5.356328240117e-03, 2.4824e-01, 1.4570e-03, - 2DIAGNOSTIC, 17, -5.525730977656e-01, 2.246362111420e-03, 2.5008e-01, 1.8358e-03, - 2DIAGNOSTIC, 18, -5.525819335080e-01, 8.252863753229e-05, 2.5189e-01, 1.8141e-03, - 2DIAGNOSTIC, 19, -5.525881460798e-01, 2.347041070129e-05, 2.5374e-01, 1.8439e-03, - 2DIAGNOSTIC, 20, -5.526107073887e-01, 1.244064123107e-05, 2.5527e-01, 1.5309e-03, - 2DIAGNOSTIC, 21, -5.526200922548e-01, 8.791725762375e-06, 2.5730e-01, 2.0339e-03, - 2DIAGNOSTIC, 22, -5.526313044251e-01, 7.739259642800e-06, 2.5951e-01, 2.2051e-03, - 2DIAGNOSTIC, 23, -5.526358308407e-01, 6.967861811751e-06, 2.6102e-01, 1.5161e-03, - 2DIAGNOSTIC, 24, -5.526370298352e-01, 6.141817163720e-06, 2.6254e-01, 1.5149e-03, - 2DIAGNOSTIC, 25, -5.526408743967e-01, 5.609107649809e-06, 2.6401e-01, 1.4760e-03, - 2DIAGNOSTIC, 26, -5.526540247523e-01, 5.137796195737e-06, 2.6553e-01, 1.5199e-03, - 2DIAGNOSTIC, 27, -5.530499964706e-01, 1.257668044594e-05, 2.6769e-01, 2.1532e-03, - 2DIAGNOSTIC, 28, -5.530598444375e-01, 1.853451585565e-05, 2.6943e-01, 1.7488e-03, - 2DIAGNOSTIC, 29, -5.534448946431e-01, 2.988863035969e-05, 2.7137e-01, 1.9388e-03, - 2DIAGNOSTIC, 30, -5.538333903748e-01, 4.512681883147e-05, 2.7306e-01, 1.6880e-03, - 2DIAGNOSTIC, 31, -5.538612185602e-01, 5.567294757867e-05, 2.7454e-01, 1.4760e-03, - 2DIAGNOSTIC, 32, -5.538734546076e-01, 6.081348486318e-05, 2.7648e-01, 1.9438e-03, - 2DIAGNOSTIC, 33, -5.538762710171e-01, 6.014374577863e-05, 2.7795e-01, 1.4710e-03, - 2DIAGNOSTIC, 34, -5.538861690421e-01, 5.407360658563e-05, 2.7951e-01, 1.5550e-03, - 2DIAGNOSTIC, 35, -5.538993882509e-01, 4.354150031360e-05, 2.8127e-01, 1.7619e-03, - 2DIAGNOSTIC, 36, -5.539237841555e-01, 3.003852439783e-05, 2.8295e-01, 1.6801e-03, - 2DIAGNOSTIC, 37, -5.546650275401e-01, 3.126688147212e-05, 2.8481e-01, 1.8630e-03, - 2DIAGNOSTIC, 38, -5.542545737459e-01, 2.348058609455e-05, 2.8674e-01, 1.9279e-03, - 2DIAGNOSTIC, 39, -5.543090191503e-01, 2.016781708934e-05, 2.9230e-01, 5.5580e-03, - 2DIAGNOSTIC, 40, -5.543090190131e-01, 2.047172432826e-05, 2.9377e-01, 1.4739e-03, - 2DIAGNOSTIC, 41, -5.543090525603e-01, 1.912943067149e-05, 2.9522e-01, 1.4451e-03, - 2DIAGNOSTIC, 42, -5.543091092847e-01, 1.613741443666e-05, 2.9676e-01, 1.5390e-03, - 2DIAGNOSTIC, 43, -5.543092051955e-01, 1.191488160767e-05, 2.9832e-01, 1.5678e-03, - 2DIAGNOSTIC, 44, -5.543093673522e-01, 7.104629676694e-06, 2.9987e-01, 1.5502e-03, - 2DIAGNOSTIC, 45, -5.543096414801e-01, 2.086738600571e-06, 3.0135e-01, 1.4791e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.053889281804e-01, 1.797693134862e+308, 5.3040e-01, 2.2905e-01, - 2DIAGNOSTIC, 2, -4.048629841574e-01, 1.797693134862e+308, 5.3270e-01, 2.2950e-03, - 2DIAGNOSTIC, 3, -4.052003666002e-01, 1.797693134862e+308, 5.3521e-01, 2.5139e-03, - 2DIAGNOSTIC, 4, -4.051603623364e-01, 1.797693134862e+308, 5.3729e-01, 2.0802e-03, - 2DIAGNOSTIC, 5, -4.051946152285e-01, 1.797693134862e+308, 5.3943e-01, 2.1348e-03, - 2DIAGNOSTIC, 6, -4.055658547798e-01, 1.797693134862e+308, 5.4182e-01, 2.3909e-03, - 2DIAGNOSTIC, 7, -4.058383416879e-01, 1.797693134862e+308, 5.4398e-01, 2.1641e-03, - 2DIAGNOSTIC, 8, -4.058790596997e-01, 1.797693134862e+308, 5.4615e-01, 2.1651e-03, - 2DIAGNOSTIC, 9, -4.062803847031e-01, 1.797693134862e+308, 5.4846e-01, 2.3160e-03, - 2DIAGNOSTIC, 10, -4.083436440553e-01, 3.566929073993e-04, 5.5172e-01, 3.2530e-03, - 2DIAGNOSTIC, 11, -4.088663718638e-01, 5.055779706320e-04, 5.5684e-01, 5.1181e-03, - 2DIAGNOSTIC, 12, -4.090538123293e-01, 5.647312968024e-04, 5.5953e-01, 2.6948e-03, - 2DIAGNOSTIC, 13, -4.091997439243e-01, 5.920751386906e-04, 5.6261e-01, 3.0751e-03, - 2DIAGNOSTIC, 14, -4.093467795594e-01, 5.672800311332e-04, 5.6527e-01, 2.6610e-03, - 2DIAGNOSTIC, 15, -4.097947713046e-01, 5.146035052697e-04, 5.6855e-01, 3.2811e-03, - 2DIAGNOSTIC, 16, -4.101233132538e-01, 4.509250350023e-04, 5.7161e-01, 3.0611e-03, - 2DIAGNOSTIC, 17, -4.097322416643e-01, 3.498655053521e-04, 5.7531e-01, 3.7060e-03, - 2DIAGNOSTIC, 18, -4.097439163979e-01, 2.315664277697e-04, 5.7765e-01, 2.3370e-03, - 2DIAGNOSTIC, 19, -4.096845311719e-01, 1.150610743896e-04, 5.7992e-01, 2.2650e-03, - 2DIAGNOSTIC, 20, -4.096910695664e-01, 7.103973869902e-05, 5.8224e-01, 2.3191e-03, - 2DIAGNOSTIC, 21, -4.096997664024e-01, 4.214750117688e-05, 5.8453e-01, 2.2969e-03, - 2DIAGNOSTIC, 22, -4.097132867411e-01, 1.875452368216e-05, 5.8681e-01, 2.2740e-03, - 2DIAGNOSTIC, 23, -4.098096053564e-01, 3.362779718262e-06, 5.8907e-01, 2.2631e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.006865781866e-01, 1.797693134862e+308, 8.5029e-01, 2.6122e-01, - 2DIAGNOSTIC, 2, -3.015701530366e-01, 1.797693134862e+308, 8.6341e-01, 1.3114e-02, - 2DIAGNOSTIC, 3, -3.026768937353e-01, 1.797693134862e+308, 8.7675e-01, 1.3343e-02, - 2DIAGNOSTIC, 4, -3.042505671578e-01, 1.797693134862e+308, 8.9087e-01, 1.4118e-02, - 2DIAGNOSTIC, 5, -3.061398852509e-01, 1.797693134862e+308, 9.0494e-01, 1.4072e-02, - 2DIAGNOSTIC, 6, -3.087379188823e-01, 1.797693134862e+308, 9.1913e-01, 1.4188e-02, - 2DIAGNOSTIC, 7, -3.100987279853e-01, 1.797693134862e+308, 9.3369e-01, 1.4556e-02, - 2DIAGNOSTIC, 8, -3.141623865815e-01, 1.797693134862e+308, 9.4671e-01, 1.3027e-02, - 2DIAGNOSTIC, 9, -3.253163339697e-01, 1.797693134862e+308, 9.6544e-01, 1.8730e-02, - 2DIAGNOSTIC, 10, -3.305098683847e-01, 5.660616794226e-03, 9.8414e-01, 1.8695e-02, - 2DIAGNOSTIC, 11, -3.308869572550e-01, 5.992598305749e-03, 9.9973e-01, 1.5590e-02, - 2DIAGNOSTIC, 12, -3.313727366696e-01, 5.849798927296e-03, 1.0161e+00, 1.6352e-02, - 2DIAGNOSTIC, 13, -3.315104922504e-01, 5.289142267413e-03, 1.0306e+00, 1.4507e-02, - 2DIAGNOSTIC, 14, -3.320237227521e-01, 4.453558064018e-03, 1.0446e+00, 1.4048e-02, - 2DIAGNOSTIC, 15, -3.352148254139e-01, 3.622608245977e-03, 1.0586e+00, 1.4004e-02, - 2DIAGNOSTIC, 16, -3.366819140088e-01, 2.800277422845e-03, 1.0752e+00, 1.6532e-02, - 2DIAGNOSTIC, 17, -3.381598515797e-01, 1.975898935454e-03, 1.1101e+00, 3.4968e-02, - 2DIAGNOSTIC, 18, -3.382212477509e-01, 1.257813984378e-03, 1.1249e+00, 1.4740e-02, - 2DIAGNOSTIC, 19, -3.382971421460e-01, 1.019416552317e-03, 1.1374e+00, 1.2547e-02, - 2DIAGNOSTIC, 20, -3.383462328298e-01, 9.406924665150e-04, 1.1502e+00, 1.2755e-02, - 2DIAGNOSTIC, 21, -3.385036349577e-01, 8.029649631565e-04, 1.1628e+00, 1.2654e-02, - 2DIAGNOSTIC, 22, -3.386488318312e-01, 6.296112279275e-04, 1.1776e+00, 1.4789e-02, - 2DIAGNOSTIC, 23, -3.388280315616e-01, 4.268657271278e-04, 1.1904e+00, 1.2821e-02, - 2DIAGNOSTIC, 24, -3.389472038665e-01, 2.230152773996e-04, 1.2033e+00, 1.2899e-02, - 2DIAGNOSTIC, 25, -3.391701130897e-01, 1.335834010483e-04, 1.2164e+00, 1.3051e-02, - 2DIAGNOSTIC, 26, -3.396743232492e-01, 1.033431358248e-04, 1.2295e+00, 1.3111e-02, - 2DIAGNOSTIC, 27, -3.403352684037e-01, 1.342398350574e-04, 1.2421e+00, 1.2577e-02, - 2DIAGNOSTIC, 28, -3.413768994176e-01, 1.841028220802e-04, 1.2588e+00, 1.6729e-02, - 2DIAGNOSTIC, 29, -3.417310129024e-01, 2.255495418714e-04, 1.2738e+00, 1.4967e-02, - 2DIAGNOSTIC, 30, -3.416872100322e-01, 2.432947102514e-04, 1.2866e+00, 1.2831e-02, - 2DIAGNOSTIC, 31, -3.417243525123e-01, 2.426721027693e-04, 1.2994e+00, 1.2746e-02, - 2DIAGNOSTIC, 32, -3.418551908220e-01, 2.263191527138e-04, 1.3123e+00, 1.2950e-02, - 2DIAGNOSTIC, 33, -3.420708915497e-01, 1.994944642950e-04, 1.3260e+00, 1.3668e-02, - 2DIAGNOSTIC, 34, -3.425352290415e-01, 1.701703003177e-04, 1.3397e+00, 1.3725e-02, - 2DIAGNOSTIC, 35, -3.459010698385e-01, 2.146846300222e-04, 1.3628e+00, 2.3058e-02, - 2DIAGNOSTIC, 36, -3.460142112540e-01, 2.489225994064e-04, 1.3779e+00, 1.5185e-02, - 2DIAGNOSTIC, 37, -3.460294898567e-01, 2.736869988329e-04, 1.3925e+00, 1.4579e-02, - 2DIAGNOSTIC, 38, -3.460929034844e-01, 2.969516852071e-04, 1.4054e+00, 1.2877e-02, - 2DIAGNOSTIC, 39, -3.462099084275e-01, 3.007419275282e-04, 1.4184e+00, 1.2980e-02, - 2DIAGNOSTIC, 40, -3.471008213554e-01, 2.926250923373e-04, 1.4333e+00, 1.4875e-02, - 2DIAGNOSTIC, 41, -3.528925536381e-01, 3.776856474126e-04, 1.4486e+00, 1.5324e-02, - 2DIAGNOSTIC, 42, -3.782387082370e-01, 9.358020089531e-04, 1.4794e+00, 3.0841e-02, - 2DIAGNOSTIC, 43, -3.786993958755e-01, 1.376767816604e-03, 1.4922e+00, 1.2734e-02, - 2DIAGNOSTIC, 44, -3.800200601223e-01, 1.703655544442e-03, 1.5048e+00, 1.2685e-02, - 2DIAGNOSTIC, 45, -3.823730284762e-01, 1.965014145917e-03, 1.5174e+00, 1.2601e-02, - 2DIAGNOSTIC, 46, -3.854453095873e-01, 2.079556039267e-03, 1.5314e+00, 1.4008e-02, - 2DIAGNOSTIC, 47, -3.907198927609e-01, 2.075288379060e-03, 1.5443e+00, 1.2873e-02, - 2DIAGNOSTIC, 48, -3.959672595773e-01, 1.963484702670e-03, 1.5572e+00, 1.2926e-02, - 2DIAGNOSTIC, 49, -4.078251843745e-01, 1.878096294712e-03, 1.5702e+00, 1.2915e-02, - 2DIAGNOSTIC, 50, -4.147798492092e-01, 1.745091486423e-03, 1.5830e+00, 1.2820e-02, - 2DIAGNOSTIC, 51, -4.287435488954e-01, 1.757581181841e-03, 1.6001e+00, 1.7072e-02, - 2DIAGNOSTIC, 52, -4.299424223338e-01, 2.016987776089e-03, 1.6130e+00, 1.2915e-02, - 2DIAGNOSTIC, 53, -4.339416693200e-01, 2.141977090540e-03, 1.6259e+00, 1.2904e-02, - 2DIAGNOSTIC, 54, -4.667002692469e-01, 2.563845114587e-03, 1.6409e+00, 1.5059e-02, - 2DIAGNOSTIC, 55, -4.850748985754e-01, 3.006665975474e-03, 1.6561e+00, 1.5162e-02, - 2DIAGNOSTIC, 56, -5.008698818728e-01, 3.404610097345e-03, 1.6710e+00, 1.4870e-02, - 2DIAGNOSTIC, 57, -5.330192939423e-01, 3.977512084437e-03, 1.6860e+00, 1.5012e-02, - 2DIAGNOSTIC, 58, -5.641326057048e-01, 4.619102083502e-03, 1.7005e+00, 1.4534e-02, - 2DIAGNOSTIC, 59, -5.788382079202e-01, 5.121901477308e-03, 1.7182e+00, 1.7659e-02, - 2DIAGNOSTIC, 60, -5.884968351568e-01, 5.316992747524e-03, 1.7331e+00, 1.4888e-02, - 2DIAGNOSTIC, 61, -6.068793299555e-01, 5.401138930796e-03, 1.7476e+00, 1.4506e-02, - 2DIAGNOSTIC, 62, -6.154466422210e-01, 5.079447580248e-03, 1.7633e+00, 1.5694e-02, - 2DIAGNOSTIC, 63, -6.195241796409e-01, 4.372895273678e-03, 1.7803e+00, 1.7027e-02, - 2DIAGNOSTIC, 64, -6.236443496005e-01, 3.710612818702e-03, 1.7948e+00, 1.4521e-02, - 2DIAGNOSTIC, 65, -6.262301619908e-01, 2.965126157773e-03, 1.8093e+00, 1.4459e-02, - 2DIAGNOSTIC, 66, -6.275582347726e-01, 2.153519808729e-03, 1.8236e+00, 1.4328e-02, - 2DIAGNOSTIC, 67, -6.280809157856e-01, 1.517023277293e-03, 1.8381e+00, 1.4529e-02, - 2DIAGNOSTIC, 68, -6.281406855189e-01, 1.090570790587e-03, 1.8509e+00, 1.2732e-02, - 2DIAGNOSTIC, 69, -6.281486772959e-01, 7.299088655874e-04, 1.8654e+00, 1.4517e-02, - 2DIAGNOSTIC, 70, -6.281916371411e-01, 4.083814874363e-04, 1.8816e+00, 1.6195e-02, - 2DIAGNOSTIC, 71, -6.281845191610e-01, 2.400126455761e-04, 1.8943e+00, 1.2732e-02, - 2DIAGNOSTIC, 72, -6.281661534406e-01, 1.374010469895e-04, 1.9066e+00, 1.2271e-02, - 2DIAGNOSTIC, 73, -6.281728505537e-01, 6.363729358196e-05, 1.9211e+00, 1.4545e-02, - 2DIAGNOSTIC, 74, -6.281802792992e-01, 2.430924307719e-05, 1.9338e+00, 1.2659e-02, - 2DIAGNOSTIC, 75, -6.282173188438e-01, 7.619054570227e-06, 1.9460e+00, 1.2278e-02, - 2DIAGNOSTIC, 76, -6.282893808088e-01, 3.145331440458e-06, 1.9598e+00, 1.3735e-02, - 2DIAGNOSTIC, 77, -6.284447049621e-01, 4.456442820332e-06, 1.9765e+00, 1.6747e-02, - 2DIAGNOSTIC, 78, -6.284391436632e-01, 5.785444661503e-06, 1.9893e+00, 1.2721e-02, - 2DIAGNOSTIC, 79, -6.285267202694e-01, 7.375517914722e-06, 2.0118e+00, 2.2586e-02, - 2DIAGNOSTIC, 80, -6.285471085646e-01, 8.767805343601e-06, 2.0266e+00, 1.4766e-02, - 2DIAGNOSTIC, 81, -6.285307182919e-01, 9.127707256674e-06, 2.0393e+00, 1.2721e-02, - 2DIAGNOSTIC, 82, -6.285167124387e-01, 8.394493803986e-06, 2.0544e+00, 1.5102e-02, - 2DIAGNOSTIC, 83, -6.284720683074e-01, 6.646844213941e-06, 2.0688e+00, 1.4407e-02, - 2DIAGNOSTIC, 84, -6.284272157714e-01, 4.098348620078e-06, 2.0873e+00, 1.8483e-02, - 2DIAGNOSTIC, 85, -6.284105827536e-01, 1.442434266290e-06, 2.1326e+00, 4.5331e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.316014779984e-01, 1.797693134862e+308, 2.5570e+00, 4.2435e-01, - 2DIAGNOSTIC, 2, -5.324755509078e-01, 1.797693134862e+308, 2.6440e+00, 8.6973e-02, - 2DIAGNOSTIC, 3, -5.330044692491e-01, 1.797693134862e+308, 2.7283e+00, 8.4296e-02, - 2DIAGNOSTIC, 4, -5.333391090277e-01, 1.797693134862e+308, 2.8114e+00, 8.3118e-02, - 2DIAGNOSTIC, 5, -5.334815884465e-01, 1.797693134862e+308, 2.8991e+00, 8.7717e-02, - 2DIAGNOSTIC, 6, -5.336022406441e-01, 1.797693134862e+308, 3.0156e+00, 1.1655e-01, - 2DIAGNOSTIC, 7, -5.336640587144e-01, 1.797693134862e+308, 3.1148e+00, 9.9191e-02, - 2DIAGNOSTIC, 8, -5.339355385946e-01, 1.797693134862e+308, 3.2012e+00, 8.6328e-02, - 2DIAGNOSTIC, 9, -5.339907173317e-01, 1.797693134862e+308, 3.3010e+00, 9.9803e-02, - 2DIAGNOSTIC, 10, -5.340338244007e-01, 2.473297316681e-04, 3.3881e+00, 8.7106e-02, - 2DIAGNOSTIC, 11, -5.340910050831e-01, 1.576270891138e-04, 3.4768e+00, 8.8701e-02, - 2DIAGNOSTIC, 12, -5.341742980761e-01, 1.110123758620e-04, 3.6181e+00, 1.4131e-01, - 2DIAGNOSTIC, 13, -5.341974302183e-01, 8.392887993640e-05, 3.7090e+00, 9.0928e-02, - 2DIAGNOSTIC, 14, -5.342135990419e-01, 6.657283832008e-05, 3.7995e+00, 9.0445e-02, - 2DIAGNOSTIC, 15, -5.342512931867e-01, 5.212309758194e-05, 3.9050e+00, 1.0554e-01, - 2DIAGNOSTIC, 16, -5.342564361301e-01, 3.909925784380e-05, 4.0116e+00, 1.0659e-01, - 2DIAGNOSTIC, 17, -5.342880665600e-01, 2.688383988540e-05, 4.1221e+00, 1.1050e-01, - 2DIAGNOSTIC, 18, -5.343499760519e-01, 2.354634396216e-05, 4.2447e+00, 1.2261e-01, - 2DIAGNOSTIC, 19, -5.343497842809e-01, 2.005576540027e-05, 4.3408e+00, 9.6073e-02, - 2DIAGNOSTIC, 20, -5.343492703180e-01, 1.634849636539e-05, 4.4217e+00, 8.0922e-02, - 2DIAGNOSTIC, 21, -5.343511695508e-01, 1.308820602838e-05, 4.5439e+00, 1.2224e-01, - 2DIAGNOSTIC, 22, -5.343500087970e-01, 1.101474580693e-05, 4.6397e+00, 9.5779e-02, - 2DIAGNOSTIC, 23, -5.343486342414e-01, 8.706185211829e-06, 4.7359e+00, 9.6223e-02, - 2DIAGNOSTIC, 24, -5.343471273828e-01, 6.214114282137e-06, 4.8218e+00, 8.5876e-02, - 2DIAGNOSTIC, 25, -5.343457750780e-01, 4.263174924621e-06, 4.9196e+00, 9.7801e-02, - 2DIAGNOSTIC, 26, -5.343462229206e-01, 2.291793038782e-06, 5.0048e+00, 8.5138e-02, - Elapsed time (stage 0): 5.1461e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.755556283510e-01, 1.797693134862e+308, 2.0327e-01, 2.0327e-01, - 2DIAGNOSTIC, 2, -8.778885584883e-01, 1.797693134862e+308, 2.0485e-01, 1.5831e-03, - 2DIAGNOSTIC, 3, -8.820290088076e-01, 1.797693134862e+308, 2.0632e-01, 1.4691e-03, - 2DIAGNOSTIC, 4, -8.869020777279e-01, 1.797693134862e+308, 2.0781e-01, 1.4880e-03, - 2DIAGNOSTIC, 5, -9.036491020963e-01, 1.797693134862e+308, 2.0962e-01, 1.8079e-03, - 2DIAGNOSTIC, 6, -9.128716136893e-01, 1.797693134862e+308, 2.1172e-01, 2.1040e-03, - 2DIAGNOSTIC, 7, -9.188141916007e-01, 1.797693134862e+308, 2.1323e-01, 1.5111e-03, - 2DIAGNOSTIC, 8, -9.284053494911e-01, 1.797693134862e+308, 2.1462e-01, 1.3928e-03, - 2DIAGNOSTIC, 9, -9.331558673478e-01, 1.797693134862e+308, 2.1601e-01, 1.3909e-03, - 2DIAGNOSTIC, 10, -9.394606573452e-01, 5.059755422376e-03, 2.1764e-01, 1.6232e-03, - 2DIAGNOSTIC, 11, -9.463402940560e-01, 4.651347783613e-03, 2.1972e-01, 2.0800e-03, - 2DIAGNOSTIC, 12, -9.506719516755e-01, 4.069445194854e-03, 2.2212e-01, 2.4059e-03, - 2DIAGNOSTIC, 13, -9.536936152125e-01, 3.386269976764e-03, 2.2395e-01, 1.8239e-03, - 2DIAGNOSTIC, 14, -9.562250868806e-01, 2.653650593052e-03, 2.2576e-01, 1.8179e-03, - 2DIAGNOSTIC, 15, -9.606065442277e-01, 2.211626197547e-03, 2.2752e-01, 1.7519e-03, - 2DIAGNOSTIC, 16, -9.642716846044e-01, 1.868758519915e-03, 2.2974e-01, 2.2240e-03, - 2DIAGNOSTIC, 17, -9.639729970392e-01, 1.494029484647e-03, 2.3151e-01, 1.7691e-03, - 2DIAGNOSTIC, 18, -9.643079936388e-01, 1.195386270461e-03, 2.3312e-01, 1.6139e-03, - 2DIAGNOSTIC, 19, -9.640118620147e-01, 8.897181711954e-04, 2.3467e-01, 1.5440e-03, - 2DIAGNOSTIC, 20, -9.639265881895e-01, 6.252609638952e-04, 2.3612e-01, 1.4510e-03, - 2DIAGNOSTIC, 21, -9.648516666199e-01, 4.401607307264e-04, 2.3750e-01, 1.3800e-03, - 2DIAGNOSTIC, 22, -9.660219961672e-01, 3.071345993177e-04, 2.3906e-01, 1.5569e-03, - 2DIAGNOSTIC, 23, -9.682962946398e-01, 2.274929813065e-04, 2.4074e-01, 1.6880e-03, - 2DIAGNOSTIC, 24, -9.678168459397e-01, 1.579562476331e-04, 2.4231e-01, 1.5621e-03, - 2DIAGNOSTIC, 25, -9.676505056374e-01, 1.299522097268e-04, 2.4389e-01, 1.5881e-03, - 2DIAGNOSTIC, 26, -9.656480272178e-01, 1.116983138921e-04, 2.4530e-01, 1.4038e-03, - 2DIAGNOSTIC, 27, -9.663322464849e-01, 8.876060226407e-05, 2.4669e-01, 1.3912e-03, - 2DIAGNOSTIC, 28, -9.675559769421e-01, 7.534468119860e-05, 2.4831e-01, 1.6172e-03, - 2DIAGNOSTIC, 29, -9.695405480994e-01, 7.314346030313e-05, 2.4996e-01, 1.6570e-03, - 2DIAGNOSTIC, 30, -9.731285331941e-01, 9.948752377205e-05, 2.5310e-01, 3.1362e-03, - 2DIAGNOSTIC, 31, -9.731562178871e-01, 1.236222939684e-04, 2.5453e-01, 1.4288e-03, - 2DIAGNOSTIC, 32, -9.732742847511e-01, 1.466269946366e-04, 2.5584e-01, 1.3101e-03, - 2DIAGNOSTIC, 33, -9.734560546249e-01, 1.767755600405e-04, 2.5730e-01, 1.4660e-03, - 2DIAGNOSTIC, 34, -9.736689785849e-01, 1.855178737974e-04, 2.5872e-01, 1.4172e-03, - 2DIAGNOSTIC, 35, -9.738219333103e-01, 1.762424215772e-04, 2.6009e-01, 1.3690e-03, - 2DIAGNOSTIC, 36, -9.731710101155e-01, 1.288846838341e-04, 2.6149e-01, 1.4019e-03, - 2DIAGNOSTIC, 37, -9.733688428697e-01, 7.966679598419e-05, 2.6294e-01, 1.4472e-03, - 2DIAGNOSTIC, 38, -9.744721360566e-01, 4.369221158631e-05, 2.6455e-01, 1.6081e-03, - 2DIAGNOSTIC, 39, -9.746279616979e-01, 2.081778136468e-05, 2.6580e-01, 1.2550e-03, - 2DIAGNOSTIC, 40, -9.749189788080e-01, 2.628520805277e-05, 2.6746e-01, 1.6580e-03, - 2DIAGNOSTIC, 41, -9.743753145960e-01, 2.546508959464e-05, 2.6883e-01, 1.3671e-03, - 2DIAGNOSTIC, 42, -9.740357661210e-01, 2.087394923072e-05, 2.7026e-01, 1.4288e-03, - 2DIAGNOSTIC, 43, -9.745921605734e-01, 1.951362402743e-05, 2.7219e-01, 1.9372e-03, - 2DIAGNOSTIC, 44, -9.757407883523e-01, 2.533596192433e-05, 2.7476e-01, 2.5680e-03, - 2DIAGNOSTIC, 45, -9.752277958751e-01, 2.618560976446e-05, 2.7627e-01, 1.5092e-03, - 2DIAGNOSTIC, 46, -9.753415464484e-01, 2.145478513413e-05, 2.7764e-01, 1.3671e-03, - 2DIAGNOSTIC, 47, -9.757398117805e-01, 1.865460106589e-05, 2.7895e-01, 1.3099e-03, - 2DIAGNOSTIC, 48, -9.769380319123e-01, 2.826350774301e-05, 2.8111e-01, 2.1670e-03, - 2DIAGNOSTIC, 49, -9.798699508176e-01, 5.315060788368e-05, 2.8242e-01, 1.3041e-03, - 2DIAGNOSTIC, 50, -9.799288963408e-01, 7.384028911391e-05, 2.8398e-01, 1.5600e-03, - 2DIAGNOSTIC, 51, -9.800717137608e-01, 8.485493951432e-05, 2.8579e-01, 1.8139e-03, - 2DIAGNOSTIC, 52, -9.793077988060e-01, 8.118944273534e-05, 2.8728e-01, 1.4911e-03, - 2DIAGNOSTIC, 53, -9.793330725473e-01, 7.293896344804e-05, 2.8883e-01, 1.5430e-03, - 2DIAGNOSTIC, 54, -9.793956164674e-01, 6.449772352803e-05, 2.9045e-01, 1.6220e-03, - 2DIAGNOSTIC, 55, -9.795957634201e-01, 4.852035717263e-05, 2.9195e-01, 1.4999e-03, - 2DIAGNOSTIC, 56, -9.788885448580e-01, 2.562907743085e-05, 2.9389e-01, 1.9460e-03, - 2DIAGNOSTIC, 57, -9.789115132275e-01, 3.537354811858e-06, 2.9541e-01, 1.5111e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.012585172301e-01, 1.797693134862e+308, 5.1507e-01, 2.1966e-01, - 2DIAGNOSTIC, 2, -8.014493637968e-01, 1.797693134862e+308, 5.1745e-01, 2.3818e-03, - 2DIAGNOSTIC, 3, -8.045434701739e-01, 1.797693134862e+308, 5.1976e-01, 2.3110e-03, - 2DIAGNOSTIC, 4, -8.076537321005e-01, 1.797693134862e+308, 5.2217e-01, 2.4061e-03, - 2DIAGNOSTIC, 5, -8.097814014729e-01, 1.797693134862e+308, 5.2444e-01, 2.2750e-03, - 2DIAGNOSTIC, 6, -8.122430038581e-01, 1.797693134862e+308, 5.2655e-01, 2.1069e-03, - 2DIAGNOSTIC, 7, -8.151907228534e-01, 1.797693134862e+308, 5.2894e-01, 2.3921e-03, - 2DIAGNOSTIC, 8, -8.186155559296e-01, 1.797693134862e+308, 5.3316e-01, 4.2129e-03, - 2DIAGNOSTIC, 9, -8.181948811277e-01, 1.797693134862e+308, 5.3521e-01, 2.0511e-03, - 2DIAGNOSTIC, 10, -8.184488816223e-01, 1.602609763553e-03, 5.3749e-01, 2.2850e-03, - 2DIAGNOSTIC, 11, -8.189457256167e-01, 1.329214276751e-03, 5.3971e-01, 2.2149e-03, - 2DIAGNOSTIC, 12, -8.196675671095e-01, 1.006377227034e-03, 5.4194e-01, 2.2359e-03, - 2DIAGNOSTIC, 13, -8.199061475263e-01, 7.299787613898e-04, 5.4453e-01, 2.5821e-03, - 2DIAGNOSTIC, 14, -8.199906525381e-01, 5.075923711041e-04, 5.4706e-01, 2.5392e-03, - 2DIAGNOSTIC, 15, -8.199080148652e-01, 3.172627943282e-04, 5.4935e-01, 2.2860e-03, - 2DIAGNOSTIC, 16, -8.201365347329e-01, 1.795053423394e-04, 5.5160e-01, 2.2540e-03, - 2DIAGNOSTIC, 17, -8.206983715614e-01, 1.112986360792e-04, 5.5391e-01, 2.3010e-03, - 2DIAGNOSTIC, 18, -8.223750248157e-01, 1.394853761230e-04, 5.5649e-01, 2.5890e-03, - 2DIAGNOSTIC, 19, -8.241130875922e-01, 1.755413343699e-04, 5.6038e-01, 3.8810e-03, - 2DIAGNOSTIC, 20, -8.240782802753e-01, 1.952474064944e-04, 5.6261e-01, 2.2349e-03, - 2DIAGNOSTIC, 21, -8.241798415136e-01, 2.053988115676e-04, 5.6499e-01, 2.3780e-03, - 2DIAGNOSTIC, 22, -8.245343631032e-01, 2.126340845596e-04, 5.6804e-01, 3.0499e-03, - 2DIAGNOSTIC, 23, -8.256793602270e-01, 2.197000655548e-04, 5.7106e-01, 3.0220e-03, - 2DIAGNOSTIC, 24, -8.255009941322e-01, 2.036630960075e-04, 5.7385e-01, 2.7850e-03, - 2DIAGNOSTIC, 25, -8.257267595910e-01, 1.725560692480e-04, 5.7726e-01, 3.4111e-03, - 2DIAGNOSTIC, 26, -8.257295078315e-01, 1.313813631340e-04, 5.7995e-01, 2.6982e-03, - 2DIAGNOSTIC, 27, -8.257486091797e-01, 8.800555659263e-05, 5.8232e-01, 2.3651e-03, - 2DIAGNOSTIC, 28, -8.255718736131e-01, 5.735761370086e-05, 5.8468e-01, 2.3639e-03, - 2DIAGNOSTIC, 29, -8.255870149407e-01, 4.465162663446e-05, 5.8710e-01, 2.4140e-03, - 2DIAGNOSTIC, 30, -8.254047119884e-01, 2.634152432136e-05, 5.8951e-01, 2.4099e-03, - 2DIAGNOSTIC, 31, -8.254273703903e-01, 8.245509387321e-06, 5.9257e-01, 3.0658e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.024589365093e-01, 1.797693134862e+308, 8.4266e-01, 2.5008e-01, - 2DIAGNOSTIC, 2, -7.031041284983e-01, 1.797693134862e+308, 8.5629e-01, 1.3628e-02, - 2DIAGNOSTIC, 3, -7.038346328079e-01, 1.797693134862e+308, 8.6980e-01, 1.3515e-02, - 2DIAGNOSTIC, 4, -7.043219470344e-01, 1.797693134862e+308, 8.8314e-01, 1.3343e-02, - 2DIAGNOSTIC, 5, -7.051176032296e-01, 1.797693134862e+308, 8.9692e-01, 1.3778e-02, - 2DIAGNOSTIC, 6, -7.056565280570e-01, 1.797693134862e+308, 9.1783e-01, 2.0906e-02, - 2DIAGNOSTIC, 7, -7.058917664389e-01, 1.797693134862e+308, 9.3311e-01, 1.5284e-02, - 2DIAGNOSTIC, 8, -7.058762145638e-01, 1.797693134862e+308, 9.4704e-01, 1.3932e-02, - 2DIAGNOSTIC, 9, -7.059049817861e-01, 1.797693134862e+308, 9.6757e-01, 2.0524e-02, - 2DIAGNOSTIC, 10, -7.059469436885e-01, 3.334434242672e-04, 9.8274e-01, 1.5176e-02, - 2DIAGNOSTIC, 11, -7.059535288998e-01, 2.301151997947e-04, 9.9598e-01, 1.3239e-02, - 2DIAGNOSTIC, 12, -7.059904777298e-01, 1.463327966561e-04, 1.0093e+00, 1.3353e-02, - 2DIAGNOSTIC, 13, -7.060403537164e-01, 8.678670324516e-05, 1.0249e+00, 1.5549e-02, - 2DIAGNOSTIC, 14, -7.061103386166e-01, 4.374084462742e-05, 1.0408e+00, 1.5897e-02, - 2DIAGNOSTIC, 15, -7.061900456003e-01, 2.578483043042e-05, 1.0564e+00, 1.5623e-02, - 2DIAGNOSTIC, 16, -7.062453172090e-01, 2.268286145883e-05, 1.0698e+00, 1.3406e-02, - 2DIAGNOSTIC, 17, -7.062804590084e-01, 2.447752152523e-05, 1.0854e+00, 1.5605e-02, - 2DIAGNOSTIC, 18, -7.064202887495e-01, 2.675477346796e-05, 1.1009e+00, 1.5510e-02, - 2DIAGNOSTIC, 19, -7.064182697375e-01, 2.694088333415e-05, 1.1145e+00, 1.3602e-02, - 2DIAGNOSTIC, 20, -7.065001362689e-01, 2.728638140286e-05, 1.1282e+00, 1.3647e-02, - 2DIAGNOSTIC, 21, -7.067021790182e-01, 2.919207370018e-05, 1.1443e+00, 1.6103e-02, - 2DIAGNOSTIC, 22, -7.068913377511e-01, 3.237994640749e-05, 1.1669e+00, 2.2625e-02, - 2DIAGNOSTIC, 23, -7.069543002764e-01, 3.429725007399e-05, 1.1844e+00, 1.7530e-02, - 2DIAGNOSTIC, 24, -7.070187144424e-01, 3.525685696625e-05, 1.1979e+00, 1.3508e-02, - 2DIAGNOSTIC, 25, -7.070912410222e-01, 3.542147617726e-05, 1.2141e+00, 1.6114e-02, - 2DIAGNOSTIC, 26, -7.071745465898e-01, 3.444510256453e-05, 1.2298e+00, 1.5726e-02, - 2DIAGNOSTIC, 27, -7.071258832265e-01, 3.010131829277e-05, 1.2455e+00, 1.5716e-02, - 2DIAGNOSTIC, 28, -7.071803750428e-01, 2.621940428203e-05, 1.2592e+00, 1.3729e-02, - 2DIAGNOSTIC, 29, -7.071758116570e-01, 2.015666892086e-05, 1.2753e+00, 1.6086e-02, - 2DIAGNOSTIC, 30, -7.072610381357e-01, 1.488153007437e-05, 1.2914e+00, 1.6046e-02, - 2DIAGNOSTIC, 31, -7.073925588681e-01, 1.288312564304e-05, 1.3071e+00, 1.5761e-02, - 2DIAGNOSTIC, 32, -7.074483328749e-01, 1.293766404722e-05, 1.3288e+00, 2.1650e-02, - 2DIAGNOSTIC, 33, -7.074396911172e-01, 1.253152491260e-05, 1.3444e+00, 1.5639e-02, - 2DIAGNOSTIC, 34, -7.074379673019e-01, 1.180219944498e-05, 1.3602e+00, 1.5752e-02, - 2DIAGNOSTIC, 35, -7.074879826115e-01, 1.145502749349e-05, 1.3758e+00, 1.5601e-02, - 2DIAGNOSTIC, 36, -7.074994070542e-01, 1.115694655388e-05, 1.3915e+00, 1.5713e-02, - 2DIAGNOSTIC, 37, -7.074855885399e-01, 9.202915749171e-06, 1.4054e+00, 1.3892e-02, - 2DIAGNOSTIC, 38, -7.074732609650e-01, 7.052582332547e-06, 1.4205e+00, 1.5098e-02, - 2DIAGNOSTIC, 39, -7.075168885777e-01, 4.826528400663e-06, 1.4355e+00, 1.4997e-02, - 2DIAGNOSTIC, 40, -7.074825045218e-01, 2.783244430482e-06, 1.4487e+00, 1.3242e-02, - 2DIAGNOSTIC, 41, -7.074890442127e-01, 1.997576200612e-06, 1.4617e+00, 1.3031e-02, - 2DIAGNOSTIC, 42, -7.075366893180e-01, 2.136761888812e-06, 1.4769e+00, 1.5164e-02, - 2DIAGNOSTIC, 43, -7.075417042569e-01, 2.095345418548e-06, 1.4919e+00, 1.5024e-02, - 2DIAGNOSTIC, 44, -7.074859546076e-01, 1.386771298701e-06, 1.5051e+00, 1.3191e-02, - 2DIAGNOSTIC, 45, -7.074902042794e-01, 1.150453862377e-06, 1.5208e+00, 1.5660e-02, - 2DIAGNOSTIC, 46, -7.074929067793e-01, 1.006378579468e-06, 1.5361e+00, 1.5313e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.977376557526e-01, 1.797693134862e+308, 1.9711e+00, 4.3503e-01, - 2DIAGNOSTIC, 2, -5.984743686317e-01, 1.797693134862e+308, 2.0639e+00, 9.2816e-02, - 2DIAGNOSTIC, 3, -5.991954289676e-01, 1.797693134862e+308, 2.1569e+00, 9.3011e-02, - 2DIAGNOSTIC, 4, -5.995973226915e-01, 1.797693134862e+308, 2.2504e+00, 9.3490e-02, - 2DIAGNOSTIC, 5, -5.997746706811e-01, 1.797693134862e+308, 2.3620e+00, 1.1152e-01, - 2DIAGNOSTIC, 6, -5.998974980969e-01, 1.797693134862e+308, 2.4674e+00, 1.0543e-01, - 2DIAGNOSTIC, 7, -5.999074632239e-01, 1.797693134862e+308, 2.5969e+00, 1.2955e-01, - 2DIAGNOSTIC, 8, -5.999255776660e-01, 1.797693134862e+308, 2.7934e+00, 1.9645e-01, - 2DIAGNOSTIC, 9, -5.999182734777e-01, 1.797693134862e+308, 2.9002e+00, 1.0682e-01, - 2DIAGNOSTIC, 10, -5.999192357165e-01, 1.985566854176e-04, 2.9967e+00, 9.6526e-02, - 2DIAGNOSTIC, 11, -5.999188548424e-01, 1.052215252376e-04, 3.1389e+00, 1.4213e-01, - 2DIAGNOSTIC, 12, -5.999193899167e-01, 4.686090412326e-05, 3.2499e+00, 1.1103e-01, - 2DIAGNOSTIC, 13, -5.999158915771e-01, 1.937786004061e-05, 3.3466e+00, 9.6677e-02, - 2DIAGNOSTIC, 14, -5.999127123326e-01, 7.674136113148e-06, 3.4620e+00, 1.1541e-01, - 2DIAGNOSTIC, 15, -5.999116634666e-01, 2.513834573808e-06, 3.5759e+00, 1.1394e-01, - 2DIAGNOSTIC, 16, -5.999125924234e-01, 1.621695060974e-06, 3.6717e+00, 9.5766e-02, - 2DIAGNOSTIC, 17, -5.999121817390e-01, 1.115887670294e-06, 3.7672e+00, 9.5550e-02, - 2DIAGNOSTIC, 18, -5.999128534900e-01, 1.238449250061e-06, 3.8733e+00, 1.0609e-01, - 2DIAGNOSTIC, 19, -5.999106385322e-01, 1.160678149974e-06, 3.9797e+00, 1.0641e-01, - 2DIAGNOSTIC, 20, -5.999050568523e-01, 1.030222516865e-06, 4.0874e+00, 1.0768e-01, - Elapsed time (stage 1): 4.2016e+00 - - -Total elapsed time: 9.3511e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:04:51 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:04:51 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x564b542ed4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.551, 48.8152, -118.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564b542f2fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f318c853010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x564b542ee850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.551, 48.8152, -118.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564b542ebf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3189194010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x564b54305b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.551, 48.8152, -118.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564b542f2550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3185ad5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x564b5430ad70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.551, 48.8152, -118.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564b54308c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3182416010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x564b5430cf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.551, 48.8152, -118.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564b5430b3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f317ed57010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x564b5430d540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.551, 48.8152, -118.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x564b5430d4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f317b698010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.450870936631e-01, 1.797693134862e+308, 2.0515e-01, 2.0515e-01, - 2DIAGNOSTIC, 2, -6.479302001575e-01, 1.797693134862e+308, 2.0793e-01, 2.7740e-03, - 2DIAGNOSTIC, 3, -6.513216818287e-01, 1.797693134862e+308, 2.1061e-01, 2.6872e-03, - 2DIAGNOSTIC, 4, -6.554035516036e-01, 1.797693134862e+308, 2.1270e-01, 2.0831e-03, - 2DIAGNOSTIC, 5, -6.579442733315e-01, 1.797693134862e+308, 2.1470e-01, 2.0020e-03, - 2DIAGNOSTIC, 6, -6.603809466744e-01, 1.797693134862e+308, 2.1659e-01, 1.8899e-03, - 2DIAGNOSTIC, 7, -6.623019877829e-01, 1.797693134862e+308, 2.1844e-01, 1.8458e-03, - 2DIAGNOSTIC, 8, -6.634641334644e-01, 1.797693134862e+308, 2.2058e-01, 2.1420e-03, - 2DIAGNOSTIC, 9, -6.674668732397e-01, 1.797693134862e+308, 2.2377e-01, 3.1950e-03, - 2DIAGNOSTIC, 10, -6.675589349303e-01, 2.236109131623e-03, 2.2616e-01, 2.3899e-03, - 2DIAGNOSTIC, 11, -6.674365494746e-01, 1.770053274291e-03, 2.2854e-01, 2.3830e-03, - 2DIAGNOSTIC, 12, -6.672401088164e-01, 1.320042832876e-03, 2.3075e-01, 2.2049e-03, - 2DIAGNOSTIC, 13, -6.670712275284e-01, 9.251891138398e-04, 2.3301e-01, 2.2571e-03, - 2DIAGNOSTIC, 14, -6.671900246630e-01, 6.300679169610e-04, 2.3522e-01, 2.2109e-03, - 2DIAGNOSTIC, 15, -6.674005297365e-01, 3.947394987052e-04, 2.3776e-01, 2.5461e-03, - 2DIAGNOSTIC, 16, -6.672899300378e-01, 2.161044467549e-04, 2.4005e-01, 2.2821e-03, - 2DIAGNOSTIC, 17, -6.671814663189e-01, 8.547404702823e-05, 2.4256e-01, 2.5120e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.534645272526e-01, 1.797693134862e+308, 4.7871e-01, 2.3615e-01, - 2DIAGNOSTIC, 2, -5.544879873638e-01, 1.797693134862e+308, 4.9262e-01, 1.3912e-02, - 2DIAGNOSTIC, 3, -5.553784678580e-01, 1.797693134862e+308, 5.0623e-01, 1.3608e-02, - 2DIAGNOSTIC, 4, -5.558919383499e-01, 1.797693134862e+308, 5.2060e-01, 1.4374e-02, - 2DIAGNOSTIC, 5, -5.561009549208e-01, 1.797693134862e+308, 5.3463e-01, 1.4022e-02, - 2DIAGNOSTIC, 6, -5.563380578264e-01, 1.797693134862e+308, 5.4837e-01, 1.3748e-02, - 2DIAGNOSTIC, 7, -5.567118928672e-01, 1.797693134862e+308, 5.6484e-01, 1.6471e-02, - 2DIAGNOSTIC, 8, -5.569601856061e-01, 1.797693134862e+308, 5.7985e-01, 1.5004e-02, - 2DIAGNOSTIC, 9, -5.570089719276e-01, 1.797693134862e+308, 5.9832e-01, 1.8469e-02, - 2DIAGNOSTIC, 10, -5.570343623843e-01, 3.766170319585e-04, 6.1333e-01, 1.5008e-02, - 2DIAGNOSTIC, 11, -5.570687891207e-01, 2.479843445194e-04, 6.2696e-01, 1.3632e-02, - 2DIAGNOSTIC, 12, -5.571043246758e-01, 1.629339067034e-04, 6.4265e-01, 1.5689e-02, - 2DIAGNOSTIC, 13, -5.571192347754e-01, 1.115446764661e-04, 6.5832e-01, 1.5673e-02, - 2DIAGNOSTIC, 14, -5.571180233877e-01, 7.635593183276e-05, 6.7477e-01, 1.6455e-02, - 2DIAGNOSTIC, 15, -5.571144935877e-01, 4.616338047231e-05, 6.8966e-01, 1.4884e-02, - 2DIAGNOSTIC, 16, -5.571072768574e-01, 2.281457995239e-05, 7.0448e-01, 1.4819e-02, - 2DIAGNOSTIC, 17, -5.570982907429e-01, 1.105842202689e-05, 7.1925e-01, 1.4771e-02, - 2DIAGNOSTIC, 18, -5.570768083147e-01, 6.174666837951e-06, 7.3423e-01, 1.4985e-02, - 2DIAGNOSTIC, 19, -5.570800154239e-01, 2.811913278673e-06, 7.4751e-01, 1.3280e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.673809898356e-01, 1.797693134862e+308, 1.1332e+00, 3.8567e-01, - 2DIAGNOSTIC, 2, -4.681774487001e-01, 1.797693134862e+308, 1.2274e+00, 9.4187e-02, - 2DIAGNOSTIC, 3, -4.688919457902e-01, 1.797693134862e+308, 1.3191e+00, 9.1781e-02, - 2DIAGNOSTIC, 4, -4.694686989832e-01, 1.797693134862e+308, 1.4127e+00, 9.3579e-02, - 2DIAGNOSTIC, 5, -4.697189477131e-01, 1.797693134862e+308, 1.5286e+00, 1.1586e-01, - 2DIAGNOSTIC, 6, -4.697663904863e-01, 1.797693134862e+308, 1.6291e+00, 1.0052e-01, - 2DIAGNOSTIC, 7, -4.698839819261e-01, 1.797693134862e+308, 1.8483e+00, 2.1917e-01, - 2DIAGNOSTIC, 8, -4.698814577560e-01, 1.797693134862e+308, 1.9578e+00, 1.0956e-01, - 2DIAGNOSTIC, 9, -4.698820568278e-01, 1.797693134862e+308, 2.1114e+00, 1.5352e-01, - 2DIAGNOSTIC, 10, -4.698814706594e-01, 2.990902406952e-04, 2.2203e+00, 1.0890e-01, - 2DIAGNOSTIC, 11, -4.698792654296e-01, 1.653876194720e-04, 2.3273e+00, 1.0707e-01, - 2DIAGNOSTIC, 12, -4.698799564145e-01, 7.906326174718e-05, 2.4345e+00, 1.0716e-01, - 2DIAGNOSTIC, 13, -4.698780815285e-01, 3.170709617728e-05, 2.5277e+00, 9.3247e-02, - 2DIAGNOSTIC, 14, -4.698776994925e-01, 1.318721439877e-05, 2.6471e+00, 1.1942e-01, - 2DIAGNOSTIC, 15, -4.698768660671e-01, 6.209510157562e-06, 2.7551e+00, 1.0796e-01, - 2DIAGNOSTIC, 16, -4.698758927385e-01, 1.360596020558e-06, 2.8535e+00, 9.8345e-02, - 2DIAGNOSTIC, 17, -4.698724815677e-01, 1.209024703776e-06, 2.9496e+00, 9.6144e-02, - 2DIAGNOSTIC, 18, -4.698735213692e-01, 1.087111621743e-06, 3.0577e+00, 1.0807e-01, - 2DIAGNOSTIC, 19, -4.698744106179e-01, 1.086399360049e-06, 3.1530e+00, 9.5292e-02, - 2DIAGNOSTIC, 20, -4.698745452789e-01, 1.126562899703e-06, 3.2505e+00, 9.7542e-02, - 2DIAGNOSTIC, 21, -4.698769689067e-01, 1.212716483942e-06, 3.3644e+00, 1.1396e-01, - 2DIAGNOSTIC, 22, -4.698779271843e-01, 1.365776809058e-06, 3.4949e+00, 1.3046e-01, - 2DIAGNOSTIC, 23, -4.698777860590e-01, 1.459546191886e-06, 3.6033e+00, 1.0837e-01, - 2DIAGNOSTIC, 24, -4.698758496638e-01, 1.479740869822e-06, 3.6980e+00, 9.4705e-02, - 2DIAGNOSTIC, 25, -4.698743947954e-01, 1.429913232071e-06, 3.7967e+00, 9.8666e-02, - 2DIAGNOSTIC, 26, -4.698731415839e-01, 1.319574947298e-06, 3.9202e+00, 1.2359e-01, - 2DIAGNOSTIC, 27, -4.698723510163e-01, 1.113013526996e-06, 4.0277e+00, 1.0750e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.121652700439e-01, 1.797693134862e+308, 5.5968e+00, 1.5690e+00, - 2DIAGNOSTIC, 2, -4.121660722671e-01, 1.797693134862e+308, 6.6995e+00, 1.1027e+00, - 2DIAGNOSTIC, 3, -4.121658728251e-01, 1.797693134862e+308, 7.3289e+00, 6.2938e-01, - 2DIAGNOSTIC, 4, -4.121658268055e-01, 1.797693134862e+308, 7.9523e+00, 6.2345e-01, - 2DIAGNOSTIC, 5, -4.121656826351e-01, 1.797693134862e+308, 8.5611e+00, 6.0879e-01, - 2DIAGNOSTIC, 6, -4.121655380762e-01, 1.797693134862e+308, 9.2297e+00, 6.6863e-01, - 2DIAGNOSTIC, 7, -4.121653134453e-01, 1.797693134862e+308, 9.8690e+00, 6.3929e-01, - 2DIAGNOSTIC, 8, -4.121653237912e-01, 1.797693134862e+308, 1.0557e+01, 6.8768e-01, - 2DIAGNOSTIC, 9, -4.121653423452e-01, 1.797693134862e+308, 1.1199e+01, 6.4249e-01, - 2DIAGNOSTIC, 10, -4.121649916293e-01, 3.073073102738e-06, 1.1840e+01, 6.4049e-01, - 2DIAGNOSTIC, 11, -4.121651619670e-01, 2.752340259232e-06, 1.2464e+01, 6.2396e-01, - 2DIAGNOSTIC, 12, -4.121649953191e-01, 2.533993763876e-06, 1.3101e+01, 6.3734e-01, - 2DIAGNOSTIC, 13, -4.121648283724e-01, 2.340296956324e-06, 1.3743e+01, 6.4238e-01, - 2DIAGNOSTIC, 14, -4.121646614708e-01, 2.173726360341e-06, 1.4321e+01, 5.7776e-01, - 2DIAGNOSTIC, 15, -4.121645804556e-01, 2.028312686350e-06, 1.4951e+01, 6.2971e-01, - 2DIAGNOSTIC, 16, -4.121647155682e-01, 1.909288700863e-06, 1.5582e+01, 6.3089e-01, - 2DIAGNOSTIC, 17, -4.121645114384e-01, 1.793705493719e-06, 1.6218e+01, 6.3643e-01, - 2DIAGNOSTIC, 18, -4.121643245373e-01, 1.691673158270e-06, 1.6964e+01, 7.4602e-01, - 2DIAGNOSTIC, 19, -4.121640901200e-01, 1.600209147114e-06, 1.7588e+01, 6.2433e-01, - 2DIAGNOSTIC, 20, -4.121639811674e-01, 1.508677612151e-06, 1.8143e+01, 5.5476e-01, - 2DIAGNOSTIC, 21, -4.121640436728e-01, 1.441002019972e-06, 1.8790e+01, 6.4626e-01, - 2DIAGNOSTIC, 22, -4.121641327716e-01, 1.383876905167e-06, 1.9419e+01, 6.2901e-01, - 2DIAGNOSTIC, 23, -4.121640929116e-01, 1.331539529484e-06, 1.9954e+01, 5.3515e-01, - 2DIAGNOSTIC, 24, -4.121639804270e-01, 1.280620281457e-06, 2.0578e+01, 6.2400e-01, - 2DIAGNOSTIC, 25, -4.121640132362e-01, 1.236576004128e-06, 2.1165e+01, 5.8750e-01, - 2DIAGNOSTIC, 26, -4.121640200458e-01, 1.202942591712e-06, 2.1809e+01, 6.4387e-01, - 2DIAGNOSTIC, 27, -4.121641708116e-01, 1.172306795132e-06, 2.2509e+01, 6.9965e-01, - 2DIAGNOSTIC, 28, -4.121641601088e-01, 1.139629476926e-06, 2.3100e+01, 5.9161e-01, - 2DIAGNOSTIC, 29, -4.121641490407e-01, 1.103257812288e-06, 2.3674e+01, 5.7359e-01, - 2DIAGNOSTIC, 30, -4.121643756733e-01, 1.071439437665e-06, 2.4380e+01, 7.0593e-01, - 2DIAGNOSTIC, 31, -4.121643523789e-01, 1.041217130460e-06, 2.5020e+01, 6.3988e-01, - 2DIAGNOSTIC, 32, -4.121645269840e-01, 1.017157682574e-06, 2.5735e+01, 7.1541e-01, - Elapsed time (stage 0): 2.6100e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.517532941038e-01, 1.797693134862e+308, 1.9209e-01, 1.9209e-01, - 2DIAGNOSTIC, 2, -6.530972053902e-01, 1.797693134862e+308, 1.9424e-01, 2.1579e-03, - 2DIAGNOSTIC, 3, -6.552014995119e-01, 1.797693134862e+308, 1.9638e-01, 2.1350e-03, - 2DIAGNOSTIC, 4, -6.577644066844e-01, 1.797693134862e+308, 1.9854e-01, 2.1639e-03, - 2DIAGNOSTIC, 5, -6.606992474478e-01, 1.797693134862e+308, 2.0066e-01, 2.1210e-03, - 2DIAGNOSTIC, 6, -6.626940002404e-01, 1.797693134862e+308, 2.0267e-01, 2.0101e-03, - 2DIAGNOSTIC, 7, -6.640173589084e-01, 1.797693134862e+308, 2.0489e-01, 2.2161e-03, - 2DIAGNOSTIC, 8, -6.650356412681e-01, 1.797693134862e+308, 2.0753e-01, 2.6410e-03, - 2DIAGNOSTIC, 9, -6.650866607583e-01, 1.797693134862e+308, 2.0961e-01, 2.0750e-03, - 2DIAGNOSTIC, 10, -6.657297272660e-01, 1.493062653983e-03, 2.1242e-01, 2.8150e-03, - 2DIAGNOSTIC, 11, -6.659363090682e-01, 1.153531751708e-03, 2.1534e-01, 2.9202e-03, - 2DIAGNOSTIC, 12, -6.659419751513e-01, 8.158049847322e-04, 2.1795e-01, 2.6109e-03, - 2DIAGNOSTIC, 13, -6.660603631141e-01, 5.299684528753e-04, 2.2031e-01, 2.3570e-03, - 2DIAGNOSTIC, 14, -6.663516734788e-01, 3.234855901024e-04, 2.2266e-01, 2.3532e-03, - 2DIAGNOSTIC, 15, -6.709263730642e-01, 3.289006975920e-04, 2.2589e-01, 3.2279e-03, - 2DIAGNOSTIC, 16, -6.715226512479e-01, 3.689091173431e-04, 2.2825e-01, 2.3620e-03, - 2DIAGNOSTIC, 17, -6.722995654971e-01, 4.238822141591e-04, 2.3112e-01, 2.8658e-03, - 2DIAGNOSTIC, 18, -6.726122726547e-01, 4.669232263572e-04, 2.3374e-01, 2.6259e-03, - 2DIAGNOSTIC, 19, -6.731118867827e-01, 4.740433325170e-04, 2.3694e-01, 3.1929e-03, - 2DIAGNOSTIC, 20, -6.740404633725e-01, 4.683739038293e-04, 2.3949e-01, 2.5499e-03, - 2DIAGNOSTIC, 21, -6.740760211448e-01, 4.239151359796e-04, 2.4178e-01, 2.2891e-03, - 2DIAGNOSTIC, 22, -6.739667407486e-01, 3.436110875389e-04, 2.4407e-01, 2.2950e-03, - 2DIAGNOSTIC, 23, -6.740132012766e-01, 2.426420355477e-04, 2.4635e-01, 2.2781e-03, - 2DIAGNOSTIC, 24, -6.743428640774e-01, 1.363614445637e-04, 2.4894e-01, 2.5890e-03, - 2DIAGNOSTIC, 25, -6.741662307195e-01, 1.004605809995e-04, 2.5124e-01, 2.2981e-03, - 2DIAGNOSTIC, 26, -6.750968172132e-01, 8.297126031086e-05, 2.5460e-01, 3.3660e-03, - 2DIAGNOSTIC, 27, -6.746037853252e-01, 6.342439887851e-05, 2.6202e-01, 7.4198e-03, - 2DIAGNOSTIC, 28, -6.746037551957e-01, 4.445165745832e-05, 2.6449e-01, 2.4731e-03, - 2DIAGNOSTIC, 29, -6.746037985831e-01, 2.969426205635e-05, 2.6677e-01, 2.2790e-03, - 2DIAGNOSTIC, 30, -6.746038719355e-01, 2.623438429925e-05, 2.6908e-01, 2.3110e-03, - 2DIAGNOSTIC, 31, -6.746039958960e-01, 2.105177034567e-05, 2.7134e-01, 2.2578e-03, - 2DIAGNOSTIC, 32, -6.746042052908e-01, 1.291162654338e-05, 2.7363e-01, 2.2850e-03, - 2DIAGNOSTIC, 33, -6.746045587446e-01, 4.812981639429e-06, 2.7590e-01, 2.2700e-03, - 2DIAGNOSTIC, 34, -6.746051546334e-01, 1.060463136172e-06, 2.7819e-01, 2.2891e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.571148223439e-01, 1.797693134862e+308, 5.1881e-01, 2.4062e-01, - 2DIAGNOSTIC, 2, -5.581501468921e-01, 1.797693134862e+308, 5.3406e-01, 1.5252e-02, - 2DIAGNOSTIC, 3, -5.594797436974e-01, 1.797693134862e+308, 5.5003e-01, 1.5971e-02, - 2DIAGNOSTIC, 4, -5.607054269487e-01, 1.797693134862e+308, 5.6679e-01, 1.6752e-02, - 2DIAGNOSTIC, 5, -5.610661490297e-01, 1.797693134862e+308, 5.8201e-01, 1.5222e-02, - 2DIAGNOSTIC, 6, -5.611934303464e-01, 1.797693134862e+308, 5.9909e-01, 1.7081e-02, - 2DIAGNOSTIC, 7, -5.612804686365e-01, 1.797693134862e+308, 6.1422e-01, 1.5126e-02, - 2DIAGNOSTIC, 8, -5.612521340328e-01, 1.797693134862e+308, 6.3128e-01, 1.7068e-02, - 2DIAGNOSTIC, 9, -5.614112128586e-01, 1.797693134862e+308, 6.4795e-01, 1.6662e-02, - 2DIAGNOSTIC, 10, -5.614149279649e-01, 4.436139631401e-04, 6.6539e-01, 1.7445e-02, - 2DIAGNOSTIC, 11, -5.613968797804e-01, 2.580388990408e-04, 6.8456e-01, 1.9168e-02, - 2DIAGNOSTIC, 12, -5.614199974626e-01, 1.246122122575e-04, 7.0366e-01, 1.9100e-02, - 2DIAGNOSTIC, 13, -5.613758959974e-01, 4.969979098664e-05, 7.2038e-01, 1.6722e-02, - 2DIAGNOSTIC, 14, -5.613756153985e-01, 2.526977392267e-05, 7.4095e-01, 2.0566e-02, - 2DIAGNOSTIC, 15, -5.613659258229e-01, 1.373656147854e-05, 7.5966e-01, 1.8712e-02, - 2DIAGNOSTIC, 16, -5.613511859492e-01, 6.131762093603e-06, 7.7679e-01, 1.7136e-02, - 2DIAGNOSTIC, 17, -5.613548857587e-01, 1.834194290111e-06, 7.9343e-01, 1.6640e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.683882993809e-01, 1.797693134862e+308, 1.1817e+00, 3.8829e-01, - 2DIAGNOSTIC, 2, -4.688492513535e-01, 1.797693134862e+308, 1.2863e+00, 1.0462e-01, - 2DIAGNOSTIC, 3, -4.692639624661e-01, 1.797693134862e+308, 1.3914e+00, 1.0507e-01, - 2DIAGNOSTIC, 4, -4.694853924122e-01, 1.797693134862e+308, 1.5091e+00, 1.1769e-01, - 2DIAGNOSTIC, 5, -4.695629978145e-01, 1.797693134862e+308, 1.6171e+00, 1.0795e-01, - 2DIAGNOSTIC, 6, -4.696881824909e-01, 1.797693134862e+308, 1.7183e+00, 1.0129e-01, - 2DIAGNOSTIC, 7, -4.701284553661e-01, 1.797693134862e+308, 1.8858e+00, 1.6751e-01, - 2DIAGNOSTIC, 8, -4.702758776102e-01, 1.797693134862e+308, 1.9908e+00, 1.0499e-01, - 2DIAGNOSTIC, 9, -4.703645607439e-01, 1.797693134862e+308, 2.0947e+00, 1.0386e-01, - 2DIAGNOSTIC, 10, -4.705076910309e-01, 2.739576502315e-04, 2.2400e+00, 1.4527e-01, - 2DIAGNOSTIC, 11, -4.705581119003e-01, 2.129097640154e-04, 2.3413e+00, 1.0131e-01, - 2DIAGNOSTIC, 12, -4.706555048440e-01, 1.706295902333e-04, 2.4677e+00, 1.2642e-01, - 2DIAGNOSTIC, 13, -4.706822635900e-01, 1.398823916840e-04, 2.5977e+00, 1.3003e-01, - 2DIAGNOSTIC, 14, -4.706844364167e-01, 1.109333905064e-04, 2.7267e+00, 1.2896e-01, - 2DIAGNOSTIC, 15, -4.706858614638e-01, 7.923959939747e-05, 2.8829e+00, 1.5622e-01, - 2DIAGNOSTIC, 16, -4.706860503149e-01, 4.877435987680e-05, 2.9973e+00, 1.1437e-01, - 2DIAGNOSTIC, 17, -4.706841281663e-01, 3.308524224017e-05, 3.1140e+00, 1.1672e-01, - 2DIAGNOSTIC, 18, -4.706818504464e-01, 2.110852597549e-05, 3.2149e+00, 1.0092e-01, - 2DIAGNOSTIC, 19, -4.706806259078e-01, 1.132089797050e-05, 3.3296e+00, 1.1470e-01, - 2DIAGNOSTIC, 20, -4.706816171417e-01, 5.976260443026e-06, 3.4311e+00, 1.0147e-01, - 2DIAGNOSTIC, 21, -4.706840126797e-01, 2.180621628080e-06, 3.5465e+00, 1.1541e-01, - 2DIAGNOSTIC, 22, -4.706850917592e-01, 1.353106864561e-06, 3.6613e+00, 1.1484e-01, - 2DIAGNOSTIC, 23, -4.706853067137e-01, 1.315859294831e-06, 3.7625e+00, 1.0116e-01, - 2DIAGNOSTIC, 24, -4.706844163768e-01, 1.320475224519e-06, 3.8911e+00, 1.2862e-01, - 2DIAGNOSTIC, 25, -4.706833765912e-01, 1.333618586404e-06, 3.9936e+00, 1.0247e-01, - 2DIAGNOSTIC, 26, -4.706832448614e-01, 1.341008689801e-06, 4.0960e+00, 1.0240e-01, - 2DIAGNOSTIC, 27, -4.706831306707e-01, 1.291645479462e-06, 4.2158e+00, 1.1980e-01, - 2DIAGNOSTIC, 28, -4.706813864131e-01, 1.149831833483e-06, 4.3354e+00, 1.1957e-01, - 2DIAGNOSTIC, 29, -4.706821209362e-01, 1.008099690412e-06, 4.4507e+00, 1.1537e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.119241056859e-01, 1.797693134862e+308, 5.7724e+00, 1.3217e+00, - 2DIAGNOSTIC, 2, -4.122672436583e-01, 1.797693134862e+308, 6.3920e+00, 6.1960e-01, - 2DIAGNOSTIC, 3, -4.124773229596e-01, 1.797693134862e+308, 7.0175e+00, 6.2549e-01, - 2DIAGNOSTIC, 4, -4.126130776766e-01, 1.797693134862e+308, 7.6407e+00, 6.2316e-01, - 2DIAGNOSTIC, 5, -4.127118504741e-01, 1.797693134862e+308, 8.7057e+00, 1.0651e+00, - 2DIAGNOSTIC, 6, -4.127186667949e-01, 1.797693134862e+308, 9.6710e+00, 9.6529e-01, - 2DIAGNOSTIC, 7, -4.127192604833e-01, 1.797693134862e+308, 1.0381e+01, 7.1018e-01, - 2DIAGNOSTIC, 8, -4.127194581047e-01, 1.797693134862e+308, 1.1088e+01, 7.0718e-01, - 2DIAGNOSTIC, 9, -4.127189823623e-01, 1.797693134862e+308, 1.1888e+01, 8.0002e-01, - 2DIAGNOSTIC, 10, -4.127185463886e-01, 1.003006775108e-04, 1.2493e+01, 6.0427e-01, - 2DIAGNOSTIC, 11, -4.127183763784e-01, 4.922692337916e-05, 1.3385e+01, 8.9252e-01, - 2DIAGNOSTIC, 12, -4.127183689555e-01, 2.204904664765e-05, 1.4164e+01, 7.7892e-01, - 2DIAGNOSTIC, 13, -4.127179575278e-01, 8.274026360472e-06, 1.4863e+01, 6.9870e-01, - 2DIAGNOSTIC, 14, -4.127179381569e-01, 2.482616661137e-06, 1.5623e+01, 7.6036e-01, - 2DIAGNOSTIC, 15, -4.127178611816e-01, 1.968343278883e-06, 1.6268e+01, 6.4478e-01, - 2DIAGNOSTIC, 16, -4.127176860093e-01, 1.817314579655e-06, 1.6887e+01, 6.1854e-01, - 2DIAGNOSTIC, 17, -4.127177372681e-01, 1.725453779113e-06, 1.7579e+01, 6.9263e-01, - 2DIAGNOSTIC, 18, -4.127175737525e-01, 1.658907216595e-06, 1.8280e+01, 7.0083e-01, - 2DIAGNOSTIC, 19, -4.127175799078e-01, 1.592957016162e-06, 1.8976e+01, 6.9568e-01, - 2DIAGNOSTIC, 20, -4.127176504424e-01, 1.528557928732e-06, 1.9689e+01, 7.1321e-01, - 2DIAGNOSTIC, 21, -4.127174695925e-01, 1.464367216292e-06, 2.0394e+01, 7.0478e-01, - 2DIAGNOSTIC, 22, -4.127174879327e-01, 1.411612873987e-06, 2.1039e+01, 6.4512e-01, - 2DIAGNOSTIC, 23, -4.127173907109e-01, 1.351379962558e-06, 2.1761e+01, 7.2187e-01, - 2DIAGNOSTIC, 24, -4.127172927352e-01, 1.295824537728e-06, 2.2457e+01, 6.9653e-01, - 2DIAGNOSTIC, 25, -4.127172718909e-01, 1.244938184188e-06, 2.3161e+01, 7.0425e-01, - 2DIAGNOSTIC, 26, -4.127172068563e-01, 1.194130654102e-06, 2.3796e+01, 6.3455e-01, - 2DIAGNOSTIC, 27, -4.127171972296e-01, 1.151098537870e-06, 2.4502e+01, 7.0586e-01, - 2DIAGNOSTIC, 28, -4.127172454097e-01, 1.110841249707e-06, 2.5107e+01, 6.0514e-01, - 2DIAGNOSTIC, 29, -4.127174258624e-01, 1.080085835790e-06, 2.5724e+01, 6.1664e-01, - 2DIAGNOSTIC, 30, -4.127178274053e-01, 1.063822368849e-06, 2.6405e+01, 6.8114e-01, - 2DIAGNOSTIC, 31, -4.127183178424e-01, 1.054932416727e-06, 2.7117e+01, 7.1195e-01, - 2DIAGNOSTIC, 32, -4.127182176243e-01, 1.042016236540e-06, 2.7897e+01, 7.8066e-01, - 2DIAGNOSTIC, 33, -4.127180496869e-01, 1.020132508127e-06, 2.8632e+01, 7.3466e-01, - Elapsed time (stage 1): 2.9048e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.041264270200e-01, 1.797693134862e+308, 2.5174e-01, 2.5174e-01, - 1DIAGNOSTIC, 2, -9.162458082320e-01, 1.797693134862e+308, 3.4868e-01, 9.6934e-02, - 1DIAGNOSTIC, 3, -9.249440404241e-01, 1.797693134862e+308, 4.4272e-01, 9.4044e-02, - 1DIAGNOSTIC, 4, -9.313028611537e-01, 1.797693134862e+308, 5.4591e-01, 1.0319e-01, - 1DIAGNOSTIC, 5, -9.362626720574e-01, 1.797693134862e+308, 6.4104e-01, 9.5123e-02, - 1DIAGNOSTIC, 6, -9.398976909316e-01, 1.797693134862e+308, 7.3011e-01, 8.9071e-02, - 1DIAGNOSTIC, 7, -9.425547579234e-01, 1.797693134862e+308, 8.2523e-01, 9.5127e-02, - 1DIAGNOSTIC, 8, -9.448395966710e-01, 1.797693134862e+308, 9.2409e-01, 9.8855e-02, - 1DIAGNOSTIC, 9, -9.467293675038e-01, 1.797693134862e+308, 1.0194e+00, 9.5361e-02, - 1DIAGNOSTIC, 10, -9.483256901237e-01, 2.763083377556e-03, 1.1186e+00, 9.9164e-02, - 1DIAGNOSTIC, 11, -9.497183670399e-01, 1.914406598907e-03, 1.2159e+00, 9.7325e-02, - 1DIAGNOSTIC, 12, -9.507804707306e-01, 1.367615383847e-03, 1.3105e+00, 9.4523e-02, - 1DIAGNOSTIC, 13, -9.516791592950e-01, 1.004308218181e-03, 1.4038e+00, 9.3372e-02, - 1DIAGNOSTIC, 14, -9.524840726296e-01, 7.556605882411e-04, 1.4998e+00, 9.5981e-02, - 1DIAGNOSTIC, 15, -9.531813901431e-01, 5.845831863966e-04, 1.5946e+00, 9.4789e-02, - 1DIAGNOSTIC, 16, -9.537548140248e-01, 4.604090144812e-04, 1.6897e+00, 9.5140e-02, - 1DIAGNOSTIC, 17, -9.542428719659e-01, 3.640497197715e-04, 1.7857e+00, 9.5998e-02, - 1DIAGNOSTIC, 18, -9.546708606645e-01, 2.900671824701e-04, 1.8774e+00, 9.1618e-02, - 1DIAGNOSTIC, 19, -9.550030840200e-01, 2.320832845746e-04, 1.9746e+00, 9.7280e-02, - 1DIAGNOSTIC, 20, -9.552554745614e-01, 1.860342210864e-04, 2.0708e+00, 9.6170e-02, - 1DIAGNOSTIC, 21, -9.555061773094e-01, 1.505735393582e-04, 2.1634e+00, 9.2629e-02, - 1DIAGNOSTIC, 22, -9.557369478436e-01, 1.219394931615e-04, 2.2598e+00, 9.6356e-02, - 1DIAGNOSTIC, 23, -9.559634873310e-01, 9.907414924229e-05, 2.3529e+00, 9.3117e-02, - 1DIAGNOSTIC, 24, -9.561824267767e-01, 8.164654091267e-05, 2.4487e+00, 9.5787e-02, - 1DIAGNOSTIC, 25, -9.563568773654e-01, 6.845078100979e-05, 2.5465e+00, 9.7846e-02, - 1DIAGNOSTIC, 26, -9.565419700456e-01, 5.863482375984e-05, 2.6433e+00, 9.6805e-02, - 1DIAGNOSTIC, 27, -9.566302001231e-01, 5.045207122498e-05, 2.7465e+00, 1.0314e-01, - 1DIAGNOSTIC, 28, -9.562788472062e-01, 3.897972137961e-05, 2.8395e+00, 9.3052e-02, - 1DIAGNOSTIC, 29, -9.562667706194e-01, 2.813412734802e-05, 2.9352e+00, 9.5678e-02, - 1DIAGNOSTIC, 30, -9.559728668080e-01, 1.497252522258e-05, 3.0280e+00, 9.2791e-02, - 1DIAGNOSTIC, 31, -9.559940232677e-01, 3.962924908500e-06, 3.1290e+00, 1.0102e-01, - 1DIAGNOSTIC, 32, -9.558379561506e-01, -5.988590442714e-06, 3.2296e+00, 1.0056e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.085270745484e-01, 1.797693134862e+308, 4.0832e+00, 8.5359e-01, - 1DIAGNOSTIC, 2, -9.137769456330e-01, 1.797693134862e+308, 4.7556e+00, 6.7244e-01, - 1DIAGNOSTIC, 3, -9.183424977331e-01, 1.797693134862e+308, 5.4244e+00, 6.6882e-01, - 1DIAGNOSTIC, 4, -9.222319748293e-01, 1.797693134862e+308, 6.1066e+00, 6.8215e-01, - 1DIAGNOSTIC, 5, -9.254341065004e-01, 1.797693134862e+308, 6.7515e+00, 6.4492e-01, - 1DIAGNOSTIC, 6, -9.280098286470e-01, 1.797693134862e+308, 7.4261e+00, 6.7459e-01, - 1DIAGNOSTIC, 7, -9.302458083778e-01, 1.797693134862e+308, 8.0966e+00, 6.7054e-01, - 1DIAGNOSTIC, 8, -9.323349595193e-01, 1.797693134862e+308, 8.7767e+00, 6.8002e-01, - 1DIAGNOSTIC, 9, -9.338116078502e-01, 1.797693134862e+308, 9.4416e+00, 6.6490e-01, - 1DIAGNOSTIC, 10, -9.350852744416e-01, 1.787269802771e-03, 1.0116e+01, 6.7452e-01, - 1DIAGNOSTIC, 11, -9.361869965018e-01, 1.363611655842e-03, 1.0789e+01, 6.7301e-01, - 1DIAGNOSTIC, 12, -9.371565039641e-01, 1.046235880632e-03, 1.1469e+01, 6.7969e-01, - 1DIAGNOSTIC, 13, -9.379889675628e-01, 8.094822798813e-04, 1.2132e+01, 6.6307e-01, - 1DIAGNOSTIC, 14, -9.387039093485e-01, 6.330849115521e-04, 1.2826e+01, 6.9426e-01, - 1DIAGNOSTIC, 15, -9.393365394372e-01, 5.002971445616e-04, 1.3503e+01, 6.7689e-01, - 1DIAGNOSTIC, 16, -9.398885464196e-01, 3.976450760339e-04, 1.4186e+01, 6.8272e-01, - 1DIAGNOSTIC, 17, -9.403768097246e-01, 3.189886887113e-04, 1.4862e+01, 6.7627e-01, - 1DIAGNOSTIC, 18, -9.408224142791e-01, 2.624175088971e-04, 1.5551e+01, 6.8949e-01, - 1DIAGNOSTIC, 19, -9.412018516464e-01, 2.171546680408e-04, 1.6234e+01, 6.8248e-01, - 1DIAGNOSTIC, 20, -9.415389754798e-01, 1.807128982368e-04, 1.6911e+01, 6.7662e-01, - 1DIAGNOSTIC, 21, -9.418401990157e-01, 1.512043028285e-04, 1.7589e+01, 6.7863e-01, - 1DIAGNOSTIC, 22, -9.421121011148e-01, 1.274117137417e-04, 1.8261e+01, 6.7200e-01, - 1DIAGNOSTIC, 23, -9.423539753354e-01, 1.079741525340e-04, 1.8945e+01, 6.8375e-01, - 1DIAGNOSTIC, 24, -9.425714277445e-01, 9.186169358013e-05, 1.9621e+01, 6.7594e-01, - 1DIAGNOSTIC, 25, -9.427671743889e-01, 7.851443299104e-05, 2.0298e+01, 6.7695e-01, - 1DIAGNOSTIC, 26, -9.429422008835e-01, 6.734266839059e-05, 2.0973e+01, 6.7539e-01, - 1DIAGNOSTIC, 27, -9.431004988688e-01, 5.796631362303e-05, 2.1649e+01, 6.7587e-01, - 1DIAGNOSTIC, 28, -9.432453189396e-01, 5.024407362656e-05, 2.2328e+01, 6.7933e-01, - 1DIAGNOSTIC, 29, -9.433802678678e-01, 4.374667636094e-05, 2.3000e+01, 6.7144e-01, - 1DIAGNOSTIC, 30, -9.435092632620e-01, 3.831678551780e-05, 2.3674e+01, 6.7420e-01, - 1DIAGNOSTIC, 31, -9.436251209534e-01, 3.374864853601e-05, 2.4337e+01, 6.6323e-01, - 1DIAGNOSTIC, 32, -9.437325267963e-01, 2.992449985862e-05, 2.5022e+01, 6.8480e-01, - 1DIAGNOSTIC, 33, -9.438298346538e-01, 2.667279487076e-05, 2.5707e+01, 6.8452e-01, - 1DIAGNOSTIC, 34, -9.439179642729e-01, 2.386746884198e-05, 2.6387e+01, 6.8047e-01, - 1DIAGNOSTIC, 35, -9.440020008546e-01, 2.144091712376e-05, 2.7070e+01, 6.8276e-01, - 1DIAGNOSTIC, 36, -9.440808659363e-01, 1.931090393724e-05, 2.7752e+01, 6.8253e-01, - 1DIAGNOSTIC, 37, -9.441558935444e-01, 1.743311254490e-05, 2.8428e+01, 6.7592e-01, - 1DIAGNOSTIC, 38, -9.442263317166e-01, 1.577380351859e-05, 2.9122e+01, 6.9362e-01, - 1DIAGNOSTIC, 39, -9.442930595373e-01, 1.432523073363e-05, 2.9808e+01, 6.8608e-01, - 1DIAGNOSTIC, 40, -9.443550899318e-01, 1.309175176364e-05, 3.0491e+01, 6.8268e-01, - 1DIAGNOSTIC, 41, -9.444132505323e-01, 1.201586853177e-05, 3.1163e+01, 6.7265e-01, - 1DIAGNOSTIC, 42, -9.444674307892e-01, 1.107008920099e-05, 3.1845e+01, 6.8205e-01, - 1DIAGNOSTIC, 43, -9.445186345768e-01, 1.021759891556e-05, 3.2527e+01, 6.8192e-01, - 1DIAGNOSTIC, 44, -9.445668544821e-01, 9.425431011591e-06, 3.3212e+01, 6.8472e-01, - 1DIAGNOSTIC, 45, -9.446123774222e-01, 8.698054107734e-06, 3.3892e+01, 6.7985e-01, - 1DIAGNOSTIC, 46, -9.446581815170e-01, 8.049009975288e-06, 3.4596e+01, 7.0412e-01, - 1DIAGNOSTIC, 47, -9.447000069501e-01, 7.466926774401e-06, 3.5273e+01, 6.7711e-01, - 1DIAGNOSTIC, 48, -9.447379661244e-01, 6.934371379382e-06, 3.5942e+01, 6.6848e-01, - 1DIAGNOSTIC, 49, -9.447744386037e-01, 6.453221441827e-06, 3.6618e+01, 6.7684e-01, - 1DIAGNOSTIC, 50, -9.448101018238e-01, 6.019523617826e-06, 3.7300e+01, 6.8111e-01, - 1DIAGNOSTIC, 51, -9.448337888816e-01, 5.565546158985e-06, 3.7980e+01, 6.8083e-01, - 1DIAGNOSTIC, 52, -9.448645689301e-01, 5.145030232828e-06, 3.8665e+01, 6.8478e-01, - 1DIAGNOSTIC, 53, -9.448933921637e-01, 4.756697480818e-06, 3.9342e+01, 6.7654e-01, - 1DIAGNOSTIC, 54, -9.449210643122e-01, 4.403519830325e-06, 4.0027e+01, 6.8483e-01, - 1DIAGNOSTIC, 55, -9.449471063633e-01, 4.085568717869e-06, 4.0709e+01, 6.8275e-01, - 1DIAGNOSTIC, 56, -9.449715703053e-01, 3.817953259905e-06, 4.1380e+01, 6.7102e-01, - 1DIAGNOSTIC, 57, -9.450036280157e-01, 3.635956981909e-06, 4.2059e+01, 6.7830e-01, - 1DIAGNOSTIC, 58, -9.450258049806e-01, 3.472321177620e-06, 4.2746e+01, 6.8689e-01, - 1DIAGNOSTIC, 59, -9.450475109892e-01, 3.327675182310e-06, 4.3439e+01, 6.9398e-01, - 1DIAGNOSTIC, 60, -9.450658786290e-01, 3.190671913511e-06, 4.4147e+01, 7.0797e-01, - 1DIAGNOSTIC, 61, -9.450824538473e-01, 2.998967576728e-06, 4.4851e+01, 7.0370e-01, - 1DIAGNOSTIC, 62, -9.450946436678e-01, 2.781492261947e-06, 4.5535e+01, 6.8352e-01, - 1DIAGNOSTIC, 63, -9.451105708202e-01, 2.565123279123e-06, 4.6246e+01, 7.1147e-01, - 1DIAGNOSTIC, 64, -9.451180534137e-01, 2.321153951521e-06, 4.6922e+01, 6.7621e-01, - 1DIAGNOSTIC, 65, -9.451309931903e-01, 2.089460586257e-06, 4.7607e+01, 6.8490e-01, - 1DIAGNOSTIC, 66, -9.451451365760e-01, 1.884421988389e-06, 4.8289e+01, 6.8129e-01, - 1DIAGNOSTIC, 67, -9.451573247030e-01, 1.747786263533e-06, 4.8964e+01, 6.7591e-01, - 1DIAGNOSTIC, 68, -9.451770051893e-01, 1.676746251754e-06, 4.9625e+01, 6.6030e-01, - 1DIAGNOSTIC, 69, -9.451895549482e-01, 1.639041460173e-06, 5.0276e+01, 6.5075e-01, - 1DIAGNOSTIC, 70, -9.451992772937e-01, 1.609018890094e-06, 5.0951e+01, 6.7556e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.969199293922e-01, 1.797693134862e+308, 5.6686e+01, 5.7352e+00, - 1DIAGNOSTIC, 2, -8.996157224991e-01, 1.797693134862e+308, 6.2157e+01, 5.4708e+00, - 1DIAGNOSTIC, 3, -9.024534089855e-01, 1.797693134862e+308, 6.7650e+01, 5.4925e+00, - 1DIAGNOSTIC, 4, -9.050755382833e-01, 1.797693134862e+308, 7.3099e+01, 5.4493e+00, - 1DIAGNOSTIC, 5, -9.072935865312e-01, 1.797693134862e+308, 7.8509e+01, 5.4102e+00, - 1DIAGNOSTIC, 6, -9.091438402080e-01, 1.797693134862e+308, 8.3955e+01, 5.4465e+00, - 1DIAGNOSTIC, 7, -9.109246757552e-01, 1.797693134862e+308, 8.9464e+01, 5.5089e+00, - 1DIAGNOSTIC, 8, -9.127077083109e-01, 1.797693134862e+308, 9.4870e+01, 5.4054e+00, - 1DIAGNOSTIC, 9, -9.145488335331e-01, 1.797693134862e+308, 1.0039e+02, 5.5162e+00, - 1DIAGNOSTIC, 10, -9.165073468243e-01, 1.345721660454e-03, 1.0582e+02, 5.4381e+00, - 1DIAGNOSTIC, 11, -9.184482468898e-01, 1.157043931474e-03, 1.1124e+02, 5.4208e+00, - 1DIAGNOSTIC, 12, -9.201636332218e-01, 1.009926598406e-03, 1.1671e+02, 5.4614e+00, - 1DIAGNOSTIC, 13, -9.216838379172e-01, 8.980299726422e-04, 1.2216e+02, 5.4566e+00, - 1DIAGNOSTIC, 14, -9.228937559831e-01, 8.052443881462e-04, 1.2761e+02, 5.4451e+00, - 1DIAGNOSTIC, 15, -9.239970376771e-01, 7.198800458093e-04, 1.3323e+02, 5.6248e+00, - 1DIAGNOSTIC, 16, -9.250129816028e-01, 6.345318226039e-04, 1.3873e+02, 5.4935e+00, - 1DIAGNOSTIC, 17, -9.258155219392e-01, 5.477648667098e-04, 1.4422e+02, 5.4916e+00, - 1DIAGNOSTIC, 18, -9.265763632666e-01, 4.638084265104e-04, 1.4965e+02, 5.4352e+00, - 1DIAGNOSTIC, 19, -9.273043931398e-01, 3.874969416069e-04, 1.5512e+02, 5.4668e+00, - 1DIAGNOSTIC, 20, -9.279971497461e-01, 3.236627020819e-04, 1.6059e+02, 5.4738e+00, - 1DIAGNOSTIC, 21, -9.286561879193e-01, 2.738894422064e-04, 1.6608e+02, 5.4836e+00, - 1DIAGNOSTIC, 22, -9.292564801864e-01, 2.354823191629e-04, 1.7153e+02, 5.4484e+00, - 1DIAGNOSTIC, 23, -9.298027181612e-01, 2.061133374445e-04, 1.7699e+02, 5.4675e+00, - 1DIAGNOSTIC, 24, -9.302999296986e-01, 1.817810737986e-04, 1.8249e+02, 5.4972e+00, - 1DIAGNOSTIC, 25, -9.307555234214e-01, 1.615059954500e-04, 1.8802e+02, 5.5341e+00, - 1DIAGNOSTIC, 26, -9.311689385091e-01, 1.445564224566e-04, 1.9353e+02, 5.5089e+00, - 1DIAGNOSTIC, 27, -9.315507957839e-01, 1.287747890903e-04, 1.9901e+02, 5.4807e+00, - 1DIAGNOSTIC, 28, -9.319007320879e-01, 1.142104870354e-04, 2.0441e+02, 5.3937e+00, - 1DIAGNOSTIC, 29, -9.322252633654e-01, 1.010591190536e-04, 2.0977e+02, 5.3646e+00, - 1DIAGNOSTIC, 30, -9.325297817269e-01, 8.947791412654e-05, 2.1513e+02, 5.3550e+00, - 1DIAGNOSTIC, 31, -9.328166008671e-01, 7.958438321562e-05, 2.2050e+02, 5.3718e+00, - 1DIAGNOSTIC, 32, -9.330887149317e-01, 7.118016917821e-05, 2.2587e+02, 5.3737e+00, - 1DIAGNOSTIC, 33, -9.333505095929e-01, 6.409315132994e-05, 2.3123e+02, 5.3531e+00, - 1DIAGNOSTIC, 34, -9.335895474678e-01, 5.802630561813e-05, 2.3657e+02, 5.3437e+00, - 1DIAGNOSTIC, 35, -9.338224505053e-01, 5.287564905510e-05, 2.4202e+02, 5.4525e+00, - 1DIAGNOSTIC, 36, -9.340418116383e-01, 4.841984040088e-05, 2.4736e+02, 5.3388e+00, - 1DIAGNOSTIC, 37, -9.342585018124e-01, 4.460450465574e-05, 2.5272e+02, 5.3627e+00, - 1DIAGNOSTIC, 38, -9.344619066778e-01, 4.125229880202e-05, 2.5809e+02, 5.3686e+00, - 1DIAGNOSTIC, 39, -9.346549073983e-01, 3.825648036816e-05, 2.6349e+02, 5.3976e+00, - 1DIAGNOSTIC, 40, -9.348358305993e-01, 3.553074720802e-05, 2.6883e+02, 5.3443e+00, - 1DIAGNOSTIC, 41, -9.349981444668e-01, 3.295205821724e-05, 2.7427e+02, 5.4356e+00, - 1DIAGNOSTIC, 42, -9.351478225947e-01, 3.047431007644e-05, 2.7966e+02, 5.3921e+00, - 1DIAGNOSTIC, 43, -9.352885871230e-01, 2.811792831123e-05, 2.8505e+02, 5.3877e+00, - 1DIAGNOSTIC, 44, -9.354237909912e-01, 2.583383328733e-05, 2.9040e+02, 5.3467e+00, - 1DIAGNOSTIC, 45, -9.355471392859e-01, 2.365304658841e-05, 2.9575e+02, 5.3563e+00, - 1DIAGNOSTIC, 46, -9.356611386895e-01, 2.157095228721e-05, 3.0114e+02, 5.3869e+00, - 1DIAGNOSTIC, 47, -9.357666291664e-01, 1.966038670552e-05, 3.0655e+02, 5.4155e+00, - 1DIAGNOSTIC, 48, -9.358670217693e-01, 1.793154815362e-05, 3.1191e+02, 5.3554e+00, - 1DIAGNOSTIC, 49, -9.359535746377e-01, 1.634721871657e-05, 3.1732e+02, 5.4093e+00, - 1DIAGNOSTIC, 50, -9.360332232668e-01, 1.490280042209e-05, 3.2268e+02, 5.3577e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.019517993209e-01, 1.797693134862e+308, 3.6693e+02, 4.4255e+01, - 1DIAGNOSTIC, 2, -9.025623711380e-01, 1.797693134862e+308, 4.1030e+02, 4.3364e+01, - 1DIAGNOSTIC, 3, -9.035509728666e-01, 1.797693134862e+308, 4.5378e+02, 4.3484e+01, - 1DIAGNOSTIC, 4, -9.047024425403e-01, 1.797693134862e+308, 4.9709e+02, 4.3306e+01, - 1DIAGNOSTIC, 5, -9.059644434584e-01, 1.797693134862e+308, 5.4064e+02, 4.3554e+01, - 1DIAGNOSTIC, 6, -9.075401859717e-01, 1.797693134862e+308, 5.8418e+02, 4.3541e+01, - 1DIAGNOSTIC, 7, -9.090624218199e-01, 1.797693134862e+308, 6.2756e+02, 4.3378e+01, - 1DIAGNOSTIC, 8, -9.104885649791e-01, 1.797693134862e+308, 6.7136e+02, 4.3798e+01, - 1DIAGNOSTIC, 9, -9.117764394462e-01, 1.797693134862e+308, 7.1486e+02, 4.3500e+01, - 1DIAGNOSTIC, 10, -9.128886871517e-01, 8.226485750701e-04, 7.5830e+02, 4.3442e+01, - 1DIAGNOSTIC, 11, -9.138637123495e-01, 7.654608763433e-04, 8.0167e+02, 4.3369e+01, - 1DIAGNOSTIC, 12, -9.147265496639e-01, 6.872634607177e-04, 8.4531e+02, 4.3642e+01, - 1DIAGNOSTIC, 13, -9.154909027112e-01, 6.010103236982e-04, 8.8898e+02, 4.3673e+01, - 1DIAGNOSTIC, 14, -9.160496499035e-01, 5.105567553640e-04, 9.3243e+02, 4.3452e+01, - 1DIAGNOSTIC, 15, -9.165392640730e-01, 4.218411134940e-04, 9.7623e+02, 4.3794e+01, - 1DIAGNOSTIC, 16, -9.169890809187e-01, 3.448683015459e-04, 1.0197e+03, 4.3481e+01, - 1DIAGNOSTIC, 17, -9.174334964532e-01, 2.810786151838e-04, 1.0633e+03, 4.3550e+01, - 1DIAGNOSTIC, 18, -9.178510496822e-01, 2.301551804934e-04, 1.1070e+03, 4.3695e+01, - 1DIAGNOSTIC, 19, -9.181622587807e-01, 1.893961638366e-04, 1.1506e+03, 4.3670e+01, - 1DIAGNOSTIC, 20, -9.184848689822e-01, 1.574501708151e-04, 1.1944e+03, 4.3763e+01, - Elapsed time (stage 2): 1195 - - -Total elapsed time: 1250 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:17 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:17 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:20 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:25 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:28 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:28 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5556 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:29 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:32 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:32 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5602 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:32 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/anat/sub-PNC002_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:35 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:35 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5667 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:35 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5682 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:26:35 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:16 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:18 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:18 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:21 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:22 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:23 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:24 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:24 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:26 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/surf/sub-PNC002_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC002_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC002 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:27 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:36 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:47 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03/sub-PNC002_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC002 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:48 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC002 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:48 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC002_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC002 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:48 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6807 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:50 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:51 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc/sub-PNC002_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/xfm/sub-PNC002_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6848 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:52 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:52 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC002_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC002_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 68.650 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/logs/proc_func_18-03-2024-19615.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:27:59 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC002 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC002/ses-03/QC/sub-PNC002_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15459_micapipe_proc-func_sub-PNC002_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC002* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 68.700 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC002_ses-03 -========================reprocessing without filter=================== -sub-PNC003_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC003 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC003 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC003 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC003 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:28:19 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:28:20 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-1_bold.nii.gz is 32.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:30:28 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:32:36 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:32:51 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.46 (mm) at sub-brick 3 -++ Max delta displ in automask = 0.17 (mm) at sub-brick 120 -** Warning: overwriting file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mainScan.1D - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:53:57 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:54:32 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-2_bold.nii.gz is 32.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 06:58:39 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:02:49 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-01/func/sub-PNC003_ses-01_task-rest_echo-3_bold.nii.gz is 32.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:06:49 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.411 -1.927 2.873 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 111.5 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.464 -2.706 5.429 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 74.3 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:14:07 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:14:36 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55e7a14566f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [108.102, 61.1182, -111.963] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e7a12cd730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e7a146d320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55e7a1459fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.8093, 114.5, -133.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e7a145fe10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e7a1c6a230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55e7a1c685c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [108.102, 61.1182, -111.963] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e7a145c3f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e7a2794450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55e7a1c66da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.8093, 114.5, -133.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e7a1463360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e7a2f8e780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.585273036792e-01, 1.797693134862e+308, 4.0252e-02, 4.0251e-02, - 2DIAGNOSTIC, 2, -6.620090701585e-01, 1.797693134862e+308, 4.1547e-02, 1.2951e-03, - 2DIAGNOSTIC, 3, -6.680075775999e-01, 1.797693134862e+308, 4.2852e-02, 1.3051e-03, - 2DIAGNOSTIC, 4, -6.730559204152e-01, 1.797693134862e+308, 4.4227e-02, 1.3750e-03, - 2DIAGNOSTIC, 5, -6.783021244080e-01, 1.797693134862e+308, 4.5594e-02, 1.3671e-03, - 2DIAGNOSTIC, 6, -6.806629429264e-01, 1.797693134862e+308, 4.6837e-02, 1.2431e-03, - 2DIAGNOSTIC, 7, -6.859441428758e-01, 1.797693134862e+308, 4.8573e-02, 1.7359e-03, - 2DIAGNOSTIC, 8, -6.878184155029e-01, 1.797693134862e+308, 4.9837e-02, 1.2641e-03, - 2DIAGNOSTIC, 9, -6.881912863631e-01, 1.797693134862e+308, 5.1076e-02, 1.2391e-03, - 2DIAGNOSTIC, 10, -6.911364982754e-01, 3.183538628849e-03, 5.2572e-02, 1.4958e-03, - 2DIAGNOSTIC, 11, -7.094173621233e-01, 3.176351929827e-03, 5.4945e-02, 2.3730e-03, - 2DIAGNOSTIC, 12, -7.107938276920e-01, 3.033686688507e-03, 5.6666e-02, 1.7209e-03, - 2DIAGNOSTIC, 13, -7.117285835376e-01, 2.866218346248e-03, 5.8114e-02, 1.4482e-03, - 2DIAGNOSTIC, 14, -7.329030766406e-01, 3.238655575049e-03, 5.9606e-02, 1.4920e-03, - 2DIAGNOSTIC, 15, -7.406583984853e-01, 3.599621975564e-03, 6.1553e-02, 1.9472e-03, - 2DIAGNOSTIC, 16, -7.442261017823e-01, 3.724194433867e-03, 6.3080e-02, 1.5261e-03, - 2DIAGNOSTIC, 17, -7.453514626036e-01, 3.650719754882e-03, 6.4561e-02, 1.4811e-03, - 2DIAGNOSTIC, 18, -7.473224616898e-01, 3.344328495971e-03, 6.6068e-02, 1.5070e-03, - 2DIAGNOSTIC, 19, -7.871465447216e-01, 3.603081166222e-03, 6.7814e-02, 1.7459e-03, - 2DIAGNOSTIC, 20, -8.329373302256e-01, 4.425880015453e-03, 6.9505e-02, 1.6911e-03, - 2DIAGNOSTIC, 21, -8.198803367740e-01, 4.840795790879e-03, 7.1432e-02, 1.9271e-03, - 2DIAGNOSTIC, 22, -8.279605326063e-01, 4.964543899935e-03, 7.2915e-02, 1.4830e-03, - 2DIAGNOSTIC, 23, -8.463896385916e-01, 4.933640696007e-03, 7.4614e-02, 1.6992e-03, - 2DIAGNOSTIC, 24, -8.637613431444e-01, 5.038039997654e-03, 7.6093e-02, 1.4789e-03, - 2DIAGNOSTIC, 25, -8.776435288548e-01, 4.975978977441e-03, 7.9154e-02, 3.0608e-03, - 2DIAGNOSTIC, 26, -8.785699511419e-01, 4.532157700691e-03, 8.0606e-02, 1.4520e-03, - 2DIAGNOSTIC, 27, -8.804181034166e-01, 3.764594186704e-03, 8.2067e-02, 1.4610e-03, - 2DIAGNOSTIC, 28, -8.843304388178e-01, 2.773191397990e-03, 8.3763e-02, 1.6959e-03, - 2DIAGNOSTIC, 29, -8.869613632098e-01, 2.125865435221e-03, 8.5207e-02, 1.4448e-03, - 2DIAGNOSTIC, 30, -8.890119094887e-01, 1.928666526113e-03, 8.6659e-02, 1.4520e-03, - 2DIAGNOSTIC, 31, -8.906301441246e-01, 1.430736638196e-03, 8.8089e-02, 1.4291e-03, - 2DIAGNOSTIC, 32, -8.955811120606e-01, 9.824924462597e-04, 8.9981e-02, 1.8921e-03, - 2DIAGNOSTIC, 33, -8.969445468434e-01, 6.875324851078e-04, 9.1872e-02, 1.8919e-03, - 2DIAGNOSTIC, 34, -8.995040647993e-01, 5.575888603521e-04, 9.3323e-02, 1.4510e-03, - 2DIAGNOSTIC, 35, -9.071439454747e-01, 6.071664205561e-04, 9.5041e-02, 1.7171e-03, - 2DIAGNOSTIC, 36, -9.091085658976e-01, 6.233515105275e-04, 9.7443e-02, 2.4021e-03, - 2DIAGNOSTIC, 37, -9.094259304739e-01, 5.999968693616e-04, 9.8920e-02, 1.4770e-03, - 2DIAGNOSTIC, 38, -9.111625413315e-01, 5.751192227730e-04, 1.0038e-01, 1.4608e-03, - 2DIAGNOSTIC, 39, -9.137428694131e-01, 5.444355515394e-04, 1.0183e-01, 1.4489e-03, - 2DIAGNOSTIC, 40, -9.154026604647e-01, 4.954507241264e-04, 1.0326e-01, 1.4348e-03, - 2DIAGNOSTIC, 41, -9.181748234300e-01, 4.389429704388e-04, 1.0492e-01, 1.6570e-03, - 2DIAGNOSTIC, 42, -9.194422535481e-01, 3.968053387363e-04, 1.1035e-01, 5.4290e-03, - 2DIAGNOSTIC, 43, -9.194421944987e-01, 3.306505945439e-04, 1.1178e-01, 1.4341e-03, - 2DIAGNOSTIC, 44, -9.194426532045e-01, 2.554270435072e-04, 1.1323e-01, 1.4491e-03, - 2DIAGNOSTIC, 45, -9.194434286832e-01, 2.187464469215e-04, 1.1470e-01, 1.4701e-03, - 2DIAGNOSTIC, 46, -9.194447394226e-01, 1.779598604940e-04, 1.1618e-01, 1.4770e-03, - 2DIAGNOSTIC, 47, -9.194469541970e-01, 1.244054554562e-04, 1.1763e-01, 1.4451e-03, - 2DIAGNOSTIC, 48, -9.194506945892e-01, 7.403572652764e-05, 1.1913e-01, 1.5001e-03, - 2DIAGNOSTIC, 49, -9.194570059495e-01, 3.729084716836e-05, 1.2055e-01, 1.4241e-03, - 2DIAGNOSTIC, 50, -9.194676395931e-01, 9.789493140358e-06, 1.2199e-01, 1.4429e-03, - 2DIAGNOSTIC, 51, -9.194856717600e-01, 1.232675451626e-06, 1.2343e-01, 1.4420e-03, - 2DIAGNOSTIC, 52, -9.195159693475e-01, 1.571494530492e-06, 1.2491e-01, 1.4780e-03, - 2DIAGNOSTIC, 53, -9.195662960567e-01, 2.132702483948e-06, 1.2641e-01, 1.4961e-03, - 2DIAGNOSTIC, 54, -9.196488538498e-01, 3.051113122172e-06, 1.2787e-01, 1.4629e-03, - 2DIAGNOSTIC, 55, -9.197818249179e-01, 4.524667348647e-06, 1.2927e-01, 1.3990e-03, - 2DIAGNOSTIC, 56, -9.199877656712e-01, 6.815767810791e-06, 1.3071e-01, 1.4369e-03, - 2DIAGNOSTIC, 57, -9.202872730729e-01, 1.020578939289e-05, 1.3216e-01, 1.4491e-03, - 2DIAGNOSTIC, 58, -9.206788295646e-01, 1.483445659315e-05, 1.3359e-01, 1.4331e-03, - 2DIAGNOSTIC, 59, -9.211108602127e-01, 2.041156459889e-05, 1.3513e-01, 1.5380e-03, - 2DIAGNOSTIC, 60, -9.215330076761e-01, 2.629421918036e-05, 1.3659e-01, 1.4601e-03, - 2DIAGNOSTIC, 61, -9.220652999576e-01, 3.252158922866e-05, 1.3808e-01, 1.4920e-03, - 2DIAGNOSTIC, 62, -9.235424275480e-01, 4.362084473338e-05, 1.3982e-01, 1.7450e-03, - 2DIAGNOSTIC, 63, -9.283698155569e-01, 7.610184366965e-05, 1.4156e-01, 1.7302e-03, - 2DIAGNOSTIC, 64, -9.292029658164e-01, 1.043958379506e-04, 1.4360e-01, 2.0480e-03, - 2DIAGNOSTIC, 65, -9.290865864974e-01, 1.221003677970e-04, 1.4531e-01, 1.7090e-03, - 2DIAGNOSTIC, 66, -9.292861216905e-01, 1.299865838883e-04, 1.4680e-01, 1.4920e-03, - 2DIAGNOSTIC, 67, -9.293577800620e-01, 1.268263035930e-04, 1.4825e-01, 1.4460e-03, - 2DIAGNOSTIC, 68, -9.294428630166e-01, 1.135130359894e-04, 1.4972e-01, 1.4729e-03, - 2DIAGNOSTIC, 69, -9.304637782080e-01, 9.672151942906e-05, 1.5141e-01, 1.6870e-03, - 2DIAGNOSTIC, 70, -9.305424412478e-01, 7.382656342215e-05, 1.5380e-01, 2.3849e-03, - 2DIAGNOSTIC, 71, -9.307195458389e-01, 4.807940415376e-05, 1.5551e-01, 1.7161e-03, - 2DIAGNOSTIC, 72, -9.307510149094e-01, 2.494642132891e-05, 1.5691e-01, 1.4009e-03, - 2DIAGNOSTIC, 73, -9.321558761756e-01, 2.841302921366e-05, 1.5838e-01, 1.4629e-03, - 2DIAGNOSTIC, 74, -9.324906271349e-01, 3.411048552575e-05, 1.6008e-01, 1.7021e-03, - 2DIAGNOSTIC, 75, -9.334814525563e-01, 4.025906540850e-05, 1.6157e-01, 1.4892e-03, - 2DIAGNOSTIC, 76, -9.413351795156e-01, 7.753066592730e-05, 1.6398e-01, 2.4118e-03, - 2DIAGNOSTIC, 77, -9.441763283901e-01, 1.179474172967e-04, 1.6549e-01, 1.5121e-03, - 2DIAGNOSTIC, 78, -9.444476270716e-01, 1.473153747601e-04, 1.6684e-01, 1.3521e-03, - 2DIAGNOSTIC, 79, -9.459505527163e-01, 1.728238003924e-04, 1.6819e-01, 1.3490e-03, - 2DIAGNOSTIC, 80, -9.460781722575e-01, 1.817579632966e-04, 1.6991e-01, 1.7140e-03, - 2DIAGNOSTIC, 81, -9.443970597144e-01, 1.664143644093e-04, 1.7325e-01, 3.3479e-03, - 2DIAGNOSTIC, 82, -9.445136625188e-01, 1.359554620095e-04, 1.7516e-01, 1.9050e-03, - 2DIAGNOSTIC, 83, -9.449481642981e-01, 1.008401894477e-04, 1.7739e-01, 2.2330e-03, - 2DIAGNOSTIC, 84, -9.451889872120e-01, 5.937405828092e-05, 1.7961e-01, 2.2190e-03, - 2DIAGNOSTIC, 85, -9.444030871290e-01, 1.334420353697e-05, 1.8201e-01, 2.3980e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.564369410271e-01, 1.797693134862e+308, 2.2535e-01, 4.3344e-02, - 2DIAGNOSTIC, 2, -5.562588116999e-01, 1.797693134862e+308, 2.2751e-01, 2.1579e-03, - 2DIAGNOSTIC, 3, -5.565408129675e-01, 1.797693134862e+308, 2.2972e-01, 2.2061e-03, - 2DIAGNOSTIC, 4, -5.587110691345e-01, 1.797693134862e+308, 2.3188e-01, 2.1670e-03, - 2DIAGNOSTIC, 5, -5.668824633279e-01, 1.797693134862e+308, 2.3485e-01, 2.9721e-03, - 2DIAGNOSTIC, 6, -5.689441902096e-01, 1.797693134862e+308, 2.4293e-01, 8.0709e-03, - 2DIAGNOSTIC, 7, -5.689441457862e-01, 1.797693134862e+308, 2.4509e-01, 2.1629e-03, - 2DIAGNOSTIC, 8, -5.689442606628e-01, 1.797693134862e+308, 2.4727e-01, 2.1770e-03, - 2DIAGNOSTIC, 9, -5.689444549113e-01, 1.797693134862e+308, 2.4939e-01, 2.1250e-03, - 2DIAGNOSTIC, 10, -5.689447833524e-01, 1.888824389355e-03, 2.5176e-01, 2.3730e-03, - 2DIAGNOSTIC, 11, -5.689453386552e-01, 1.452719629096e-03, 2.5410e-01, 2.3372e-03, - 2DIAGNOSTIC, 12, -5.689462774189e-01, 9.585173104708e-04, 2.5642e-01, 2.3181e-03, - 2DIAGNOSTIC, 13, -5.689478641546e-01, 4.682825032565e-04, 2.5875e-01, 2.3289e-03, - 2DIAGNOSTIC, 14, -5.689505453032e-01, 7.673259626342e-05, 2.6118e-01, 2.4309e-03, - 2DIAGNOSTIC, 15, -5.689550733795e-01, 2.801295748339e-06, 2.6374e-01, 2.5582e-03, - 2DIAGNOSTIC, 16, -5.689627212148e-01, 3.063005399942e-06, 2.6620e-01, 2.4581e-03, - 2DIAGNOSTIC, 17, -5.689756212469e-01, 3.571412849832e-06, 2.6853e-01, 2.3341e-03, - 2DIAGNOSTIC, 18, -5.689973174021e-01, 4.468574722638e-06, 2.7084e-01, 2.3110e-03, - 2DIAGNOSTIC, 19, -5.690346059120e-01, 6.000910903067e-06, 2.7317e-01, 2.3260e-03, - 2DIAGNOSTIC, 20, -5.690973310801e-01, 8.542481774745e-06, 2.7596e-01, 2.7940e-03, - 2DIAGNOSTIC, 21, -5.692018362600e-01, 1.267594509974e-05, 2.7874e-01, 2.7812e-03, - 2DIAGNOSTIC, 22, -5.693700210573e-01, 1.920243473184e-05, 2.8158e-01, 2.8429e-03, - 2DIAGNOSTIC, 23, -5.696518771156e-01, 2.961156399241e-05, 2.8442e-01, 2.8329e-03, - 2DIAGNOSTIC, 24, -5.700756409973e-01, 4.530277124469e-05, 2.8726e-01, 2.8391e-03, - 2DIAGNOSTIC, 25, -5.707581750940e-01, 6.922710377132e-05, 2.9011e-01, 2.8551e-03, - 2DIAGNOSTIC, 26, -5.726822696002e-01, 1.218867085589e-04, 2.9335e-01, 3.2370e-03, - 2DIAGNOSTIC, 27, -5.769699236915e-01, 2.381381269395e-04, 2.9672e-01, 3.3710e-03, - 2DIAGNOSTIC, 28, -5.784561278149e-01, 3.488522213839e-04, 2.9963e-01, 2.9151e-03, - 2DIAGNOSTIC, 29, -5.789424648338e-01, 4.285444399319e-04, 3.0296e-01, 3.3259e-03, - 2DIAGNOSTIC, 30, -5.797111604880e-01, 4.772157351308e-04, 3.0625e-01, 3.2861e-03, - 2DIAGNOSTIC, 31, -5.826147282748e-01, 5.254034604953e-04, 3.1173e-01, 5.4839e-03, - 2DIAGNOSTIC, 32, -5.826512446528e-01, 5.218237155176e-04, 3.1465e-01, 2.9209e-03, - 2DIAGNOSTIC, 33, -5.830069535511e-01, 4.791895295234e-04, 3.1753e-01, 2.8780e-03, - 2DIAGNOSTIC, 34, -5.834027073254e-01, 4.071322949492e-04, 3.2074e-01, 3.2110e-03, - 2DIAGNOSTIC, 35, -5.836335226152e-01, 3.135387953706e-04, 3.2360e-01, 2.8551e-03, - 2DIAGNOSTIC, 36, -5.826949082601e-01, 2.071716662588e-04, 3.2642e-01, 2.8241e-03, - 2DIAGNOSTIC, 37, -5.828294830055e-01, 1.464682930907e-04, 3.2923e-01, 2.8141e-03, - 2DIAGNOSTIC, 38, -5.829809245340e-01, 9.689127627637e-05, 3.3205e-01, 2.8119e-03, - 2DIAGNOSTIC, 39, -5.832197233849e-01, 4.982285768354e-05, 3.3487e-01, 2.8260e-03, - 2DIAGNOSTIC, 40, -5.838757769663e-01, 1.715346736099e-05, 3.3806e-01, 3.1910e-03, - 2DIAGNOSTIC, 41, -5.844493561062e-01, 2.676770643778e-05, 3.4093e-01, 2.8648e-03, - 2DIAGNOSTIC, 42, -5.854521363743e-01, 4.564160568441e-05, 3.4531e-01, 4.3859e-03, - 2DIAGNOSTIC, 43, -5.863286246287e-01, 7.308893749600e-05, 3.4855e-01, 3.2361e-03, - 2DIAGNOSTIC, 44, -5.865345592374e-01, 9.882683650818e-05, 3.5136e-01, 2.8069e-03, - 2DIAGNOSTIC, 45, -5.871252147544e-01, 1.234733672462e-04, 3.5412e-01, 2.7649e-03, - 2DIAGNOSTIC, 46, -5.876078870037e-01, 1.302229345664e-04, 3.5651e-01, 2.3901e-03, - 2DIAGNOSTIC, 47, -5.873657843449e-01, 1.229818665579e-04, 3.5904e-01, 2.5280e-03, - 2DIAGNOSTIC, 48, -5.875242929934e-01, 1.076729309182e-04, 3.6155e-01, 2.5070e-03, - 2DIAGNOSTIC, 49, -5.877579686777e-01, 8.747832005607e-05, 3.6407e-01, 2.5189e-03, - 2DIAGNOSTIC, 50, -5.880518424954e-01, 6.906389073095e-05, 3.6676e-01, 2.6970e-03, - 2DIAGNOSTIC, 51, -5.880810069663e-01, 5.040137245288e-05, 3.6980e-01, 3.0389e-03, - 2DIAGNOSTIC, 52, -5.878570738832e-01, 3.504756022006e-05, 3.7249e-01, 2.6910e-03, - 2DIAGNOSTIC, 53, -5.888799365232e-01, 3.483130890570e-05, 3.7514e-01, 2.6500e-03, - 2DIAGNOSTIC, 54, -5.892244330561e-01, 3.588962120001e-05, 3.7778e-01, 2.6350e-03, - 2DIAGNOSTIC, 55, -5.899305893990e-01, 4.495279030380e-05, 3.8013e-01, 2.3501e-03, - 2DIAGNOSTIC, 56, -5.905909067579e-01, 5.959159962939e-05, 3.8262e-01, 2.4972e-03, - 2DIAGNOSTIC, 57, -5.910168789620e-01, 6.960771451554e-05, 3.8486e-01, 2.2321e-03, - 2DIAGNOSTIC, 58, -5.918732552381e-01, 8.113802050988e-05, 3.8741e-01, 2.5501e-03, - 2DIAGNOSTIC, 59, -5.924689647749e-01, 9.116693277702e-05, 3.9088e-01, 3.4759e-03, - 2DIAGNOSTIC, 60, -5.925253919120e-01, 9.499372486135e-05, 3.9314e-01, 2.2590e-03, - 2DIAGNOSTIC, 61, -5.928493564023e-01, 9.268364422049e-05, 3.9568e-01, 2.5408e-03, - 2DIAGNOSTIC, 62, -5.928256011003e-01, 7.942038563267e-05, 3.9795e-01, 2.2669e-03, - 2DIAGNOSTIC, 63, -5.931478280520e-01, 6.945935085981e-05, 4.0020e-01, 2.2531e-03, - 2DIAGNOSTIC, 64, -5.936702966786e-01, 5.965647496722e-05, 4.0242e-01, 2.2180e-03, - 2DIAGNOSTIC, 65, -5.938531184764e-01, 5.106357565521e-05, 4.0508e-01, 2.6550e-03, - 2DIAGNOSTIC, 66, -5.939497420974e-01, 4.355996039169e-05, 4.0756e-01, 2.4860e-03, - 2DIAGNOSTIC, 67, -5.941634330307e-01, 3.674350967255e-05, 4.1034e-01, 2.7759e-03, - 2DIAGNOSTIC, 68, -5.944956625646e-01, 3.506267639680e-05, 4.1254e-01, 2.1980e-03, - 2DIAGNOSTIC, 69, -5.945465824415e-01, 3.459193546058e-05, 4.1476e-01, 2.2280e-03, - 2DIAGNOSTIC, 70, -5.946853941840e-01, 3.218692034358e-05, 4.1702e-01, 2.2578e-03, - 2DIAGNOSTIC, 71, -5.952120496248e-01, 3.274358562079e-05, 4.1925e-01, 2.2309e-03, - 2DIAGNOSTIC, 72, -5.959881980058e-01, 3.516628591270e-05, 4.2215e-01, 2.8949e-03, - 2DIAGNOSTIC, 73, -5.960771952249e-01, 3.671953849336e-05, 4.2490e-01, 2.7552e-03, - 2DIAGNOSTIC, 74, -5.962014529611e-01, 3.908689993893e-05, 4.2839e-01, 3.4869e-03, - 2DIAGNOSTIC, 75, -5.967282241377e-01, 4.235848776893e-05, 4.3158e-01, 3.1900e-03, - 2DIAGNOSTIC, 76, -5.966651066011e-01, 4.154640752295e-05, 4.3477e-01, 3.1900e-03, - 2DIAGNOSTIC, 77, -5.999541584951e-01, 5.893909443167e-05, 4.3883e-01, 4.0622e-03, - 2DIAGNOSTIC, 78, -6.004509679665e-01, 7.489952471005e-05, 4.4225e-01, 3.4232e-03, - 2DIAGNOSTIC, 79, -6.005091347429e-01, 8.414340730786e-05, 4.4550e-01, 3.2461e-03, - 2DIAGNOSTIC, 80, -6.001812582647e-01, 8.418341688542e-05, 4.4836e-01, 2.8551e-03, - 2DIAGNOSTIC, 81, -6.000188695146e-01, 7.824068468525e-05, 4.5126e-01, 2.9011e-03, - 2DIAGNOSTIC, 82, -6.020828938035e-01, 8.153338769771e-05, 4.5409e-01, 2.8350e-03, - 2DIAGNOSTIC, 83, -6.036915397484e-01, 8.637258282762e-05, 4.5690e-01, 2.8059e-03, - 2DIAGNOSTIC, 84, -6.056738247512e-01, 9.507405424008e-05, 4.6026e-01, 3.3581e-03, - 2DIAGNOSTIC, 85, -6.084018828465e-01, 1.133551310521e-04, 4.6354e-01, 3.2840e-03, - 2DIAGNOSTIC, 86, -6.092039075209e-01, 1.237832425273e-04, 4.6601e-01, 2.4660e-03, - 2DIAGNOSTIC, 87, -6.122937079314e-01, 1.576036867389e-04, 4.6887e-01, 2.8629e-03, - 2DIAGNOSTIC, 88, -6.128071208650e-01, 1.805344002666e-04, 4.7330e-01, 4.4291e-03, - 2DIAGNOSTIC, 89, -6.136014891690e-01, 1.903098354365e-04, 4.7619e-01, 2.8911e-03, - 2DIAGNOSTIC, 90, -6.152674084919e-01, 1.888887257253e-04, 4.7870e-01, 2.5070e-03, - 2DIAGNOSTIC, 91, -6.155296336323e-01, 1.694178362905e-04, 4.8117e-01, 2.4700e-03, - 2DIAGNOSTIC, 92, -6.159141324739e-01, 1.469062945568e-04, 4.8366e-01, 2.4951e-03, - 2DIAGNOSTIC, 93, -6.161043277898e-01, 1.200318956771e-04, 4.8698e-01, 3.3219e-03, - 2DIAGNOSTIC, 94, -6.165921439507e-01, 9.472919365672e-05, 4.8932e-01, 2.3348e-03, - 2DIAGNOSTIC, 95, -6.167480428074e-01, 7.548441360932e-05, 4.9166e-01, 2.3448e-03, - 2DIAGNOSTIC, 96, -6.171148716649e-01, 5.489682907436e-05, 4.9491e-01, 3.2470e-03, - 2DIAGNOSTIC, 97, -6.172449424189e-01, 4.560296138193e-05, 4.9746e-01, 2.5539e-03, - 2DIAGNOSTIC, 98, -6.173592061805e-01, 3.521759381126e-05, 5.0008e-01, 2.6169e-03, - 2DIAGNOSTIC, 99, -6.171494582226e-01, 2.431860465284e-05, 5.0341e-01, 3.3271e-03, - 2DIAGNOSTIC, 100, -6.176651635978e-01, 2.188453868442e-05, 5.0596e-01, 2.5570e-03, - 2DIAGNOSTIC, 101, -6.178005151255e-01, 1.920342922408e-05, 5.0864e-01, 2.6739e-03, - 2DIAGNOSTIC, 102, -6.182302997566e-01, 1.859288222255e-05, 5.1157e-01, 2.9290e-03, - 2DIAGNOSTIC, 103, -6.179709787279e-01, 1.585583586517e-05, 5.1405e-01, 2.4850e-03, - 2DIAGNOSTIC, 104, -6.183188956909e-01, 1.562792340937e-05, 5.1677e-01, 2.7130e-03, - 2DIAGNOSTIC, 105, -6.179436237690e-01, 1.281652201235e-05, 5.1946e-01, 2.6948e-03, - 2DIAGNOSTIC, 106, -6.181718381858e-01, 1.154997469122e-05, 5.2212e-01, 2.6581e-03, - 2DIAGNOSTIC, 107, -6.182762303986e-01, 1.023200559377e-05, 5.2443e-01, 2.3119e-03, - 2DIAGNOSTIC, 108, -6.178990994432e-01, 6.849810446073e-06, 5.2677e-01, 2.3420e-03, - 2DIAGNOSTIC, 109, -6.185422956453e-01, 4.838725379238e-06, 5.2943e-01, 2.6550e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.715211712951e-01, 1.797693134862e+308, 5.9702e-01, 6.7590e-02, - 2DIAGNOSTIC, 2, -4.719048601489e-01, 1.797693134862e+308, 6.0980e-01, 1.2781e-02, - 2DIAGNOSTIC, 3, -4.725500316906e-01, 1.797693134862e+308, 6.2265e-01, 1.2855e-02, - 2DIAGNOSTIC, 4, -4.737312044640e-01, 1.797693134862e+308, 6.3563e-01, 1.2977e-02, - 2DIAGNOSTIC, 5, -4.750816301642e-01, 1.797693134862e+308, 6.5170e-01, 1.6068e-02, - 2DIAGNOSTIC, 6, -4.756755065340e-01, 1.797693134862e+308, 6.6509e-01, 1.3393e-02, - 2DIAGNOSTIC, 7, -4.772440939086e-01, 1.797693134862e+308, 6.7802e-01, 1.2927e-02, - 2DIAGNOSTIC, 8, -4.785945461099e-01, 1.797693134862e+308, 6.9073e-01, 1.2709e-02, - 2DIAGNOSTIC, 9, -4.820130355298e-01, 1.797693134862e+308, 7.0621e-01, 1.5484e-02, - 2DIAGNOSTIC, 10, -4.842284803935e-01, 1.645439883924e-03, 7.2959e-01, 2.3375e-02, - 2DIAGNOSTIC, 11, -4.842429205697e-01, 1.641735842074e-03, 7.4213e-01, 1.2543e-02, - 2DIAGNOSTIC, 12, -4.847936592539e-01, 1.541364242224e-03, 7.5308e-01, 1.0948e-02, - 2DIAGNOSTIC, 13, -4.851948914753e-01, 1.364309053719e-03, 7.6742e-01, 1.4341e-02, - 2DIAGNOSTIC, 14, -4.859837768527e-01, 1.169268031402e-03, 7.8462e-01, 1.7199e-02, - 2DIAGNOSTIC, 15, -4.861400138510e-01, 9.523251696647e-04, 7.9927e-01, 1.4651e-02, - 2DIAGNOSTIC, 16, -4.861870119828e-01, 7.005736157666e-04, 8.1397e-01, 1.4699e-02, - 2DIAGNOSTIC, 17, -4.862202903022e-01, 4.717732561626e-04, 8.2975e-01, 1.5782e-02, - 2DIAGNOSTIC, 18, -4.862968766858e-01, 2.695701280114e-04, 8.4169e-01, 1.1945e-02, - 2DIAGNOSTIC, 19, -4.867468426442e-01, 1.822574288352e-04, 8.5655e-01, 1.4858e-02, - 2DIAGNOSTIC, 20, -4.875029648145e-01, 1.746471513602e-04, 8.7625e-01, 1.9701e-02, - 2DIAGNOSTIC, 21, -4.875081870500e-01, 1.518049979806e-04, 8.8750e-01, 1.1248e-02, - 2DIAGNOSTIC, 22, -4.875921469213e-01, 1.344877140629e-04, 9.0028e-01, 1.2779e-02, - 2DIAGNOSTIC, 23, -4.876861008070e-01, 1.186141464569e-04, 9.1212e-01, 1.1839e-02, - 2DIAGNOSTIC, 24, -4.878245226992e-01, 1.154836542924e-04, 9.2416e-01, 1.2040e-02, - 2DIAGNOSTIC, 25, -4.880497503665e-01, 1.105122517130e-04, 9.3638e-01, 1.2225e-02, - 2DIAGNOSTIC, 26, -4.881353585734e-01, 9.868031532814e-05, 9.5082e-01, 1.4438e-02, - 2DIAGNOSTIC, 27, -4.880336967747e-01, 7.742496925731e-05, 9.6353e-01, 1.2709e-02, - 2DIAGNOSTIC, 28, -4.881207307327e-01, 5.398493633513e-05, 9.7523e-01, 1.1697e-02, - 2DIAGNOSTIC, 29, -4.888319817035e-01, 5.020881457610e-05, 9.8666e-01, 1.1428e-02, - 2DIAGNOSTIC, 30, -4.889340080689e-01, 5.840882367707e-05, 9.9972e-01, 1.3066e-02, - 2DIAGNOSTIC, 31, -4.889667882905e-01, 6.148517262328e-05, 1.0144e+00, 1.4648e-02, - 2DIAGNOSTIC, 32, -4.890489078567e-01, 6.197624890122e-05, 1.0245e+00, 1.0152e-02, - 2DIAGNOSTIC, 33, -4.888811538284e-01, 5.527357488742e-05, 1.0345e+00, 9.9611e-03, - 2DIAGNOSTIC, 34, -4.891165531186e-01, 5.003733406844e-05, 1.0493e+00, 1.4831e-02, - 2DIAGNOSTIC, 35, -4.896020755653e-01, 5.211925880238e-05, 1.0608e+00, 1.1534e-02, - 2DIAGNOSTIC, 36, -4.896192427156e-01, 5.090043768256e-05, 1.0711e+00, 1.0277e-02, - 2DIAGNOSTIC, 37, -4.897659706730e-01, 4.595888280874e-05, 1.0812e+00, 1.0077e-02, - 2DIAGNOSTIC, 38, -4.899215760698e-01, 4.052901871669e-05, 1.0957e+00, 1.4470e-02, - 2DIAGNOSTIC, 39, -4.901211947933e-01, 4.515910576257e-05, 1.1136e+00, 1.7898e-02, - 2DIAGNOSTIC, 40, -4.901721561710e-01, 4.737516585183e-05, 1.1260e+00, 1.2428e-02, - 2DIAGNOSTIC, 41, -4.901863095741e-01, 4.571347167900e-05, 1.1408e+00, 1.4792e-02, - 2DIAGNOSTIC, 42, -4.901653710071e-01, 4.091781980932e-05, 1.1524e+00, 1.1652e-02, - 2DIAGNOSTIC, 43, -4.900692078078e-01, 2.887788671618e-05, 1.1633e+00, 1.0874e-02, - 2DIAGNOSTIC, 44, -4.902298790288e-01, 1.980265489675e-05, 1.1750e+00, 1.1714e-02, - 2DIAGNOSTIC, 45, -4.901382046198e-01, 1.438299852737e-05, 1.1857e+00, 1.0643e-02, - 2DIAGNOSTIC, 46, -4.900908665657e-01, 7.554935423676e-06, 1.1961e+00, 1.0469e-02, - 2DIAGNOSTIC, 47, -4.902152791302e-01, 3.767956581378e-06, 1.2079e+00, 1.1711e-02, - 2DIAGNOSTIC, 48, -4.903597868436e-01, 3.387783102261e-06, 1.2214e+00, 1.3557e-02, - 2DIAGNOSTIC, 49, -4.904190802932e-01, 5.769281884366e-06, 1.2335e+00, 1.2088e-02, - 2DIAGNOSTIC, 50, -4.903643796187e-01, 7.532108936247e-06, 1.2456e+00, 1.2096e-02, - 2DIAGNOSTIC, 51, -4.903060566087e-01, 8.142712396030e-06, 1.2579e+00, 1.2268e-02, - 2DIAGNOSTIC, 52, -4.903173068851e-01, 7.930498579604e-06, 1.2933e+00, 3.5403e-02, - 2DIAGNOSTIC, 53, -4.903173057518e-01, 5.836912510503e-06, 1.3037e+00, 1.0437e-02, - 2DIAGNOSTIC, 54, -4.903173070197e-01, 5.079130349916e-06, 1.3142e+00, 1.0528e-02, - 2DIAGNOSTIC, 55, -4.903173091628e-01, 3.011631120774e-06, 1.3247e+00, 1.0451e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.124712108174e-01, 1.797693134862e+308, 1.5007e+00, 1.7606e-01, - Elapsed time (stage 0): 1.5301e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.752911494309e-01, 1.797693134862e+308, 3.2630e-02, 3.2630e-02, - 2DIAGNOSTIC, 2, -9.776531480746e-01, 1.797693134862e+308, 3.4139e-02, 1.5092e-03, - 2DIAGNOSTIC, 3, -9.810240522222e-01, 1.797693134862e+308, 3.5418e-02, 1.2789e-03, - 2DIAGNOSTIC, 4, -9.869503414657e-01, 1.797693134862e+308, 3.6649e-02, 1.2310e-03, - 2DIAGNOSTIC, 5, -9.952438720532e-01, 1.797693134862e+308, 3.7903e-02, 1.2541e-03, - 2DIAGNOSTIC, 6, -1.005041854590e+00, 1.797693134862e+308, 3.9369e-02, 1.4660e-03, - 2DIAGNOSTIC, 7, -1.015842357890e+00, 1.797693134862e+308, 4.1398e-02, 2.0292e-03, - 2DIAGNOSTIC, 8, -1.015691192440e+00, 1.797693134862e+308, 4.2735e-02, 1.3371e-03, - 2DIAGNOSTIC, 9, -1.016714003034e+00, 1.797693134862e+308, 4.3860e-02, 1.1251e-03, - 2DIAGNOSTIC, 10, -1.016734241333e+00, 3.276518596949e-03, 4.5209e-02, 1.3490e-03, - 2DIAGNOSTIC, 11, -1.017622872470e+00, 2.673416307712e-03, 4.6535e-02, 1.3251e-03, - 2DIAGNOSTIC, 12, -1.021432564771e+00, 2.075805332541e-03, 4.8048e-02, 1.5140e-03, - 2DIAGNOSTIC, 13, -1.023348441346e+00, 1.498720431811e-03, 4.9825e-02, 1.7769e-03, - 2DIAGNOSTIC, 14, -1.024734277341e+00, 1.018354455172e-03, 5.1149e-02, 1.3239e-03, - 2DIAGNOSTIC, 15, -1.026120439009e+00, 6.905358171304e-04, 5.2689e-02, 1.5399e-03, - 2DIAGNOSTIC, 16, -1.027554495758e+00, 5.337323999775e-04, 5.4020e-02, 1.3309e-03, - 2DIAGNOSTIC, 17, -1.029895224038e+00, 5.634744285551e-04, 5.5538e-02, 1.5178e-03, - 2DIAGNOSTIC, 18, -1.033344913787e+00, 5.880001924623e-04, 5.7094e-02, 1.5562e-03, - 2DIAGNOSTIC, 19, -1.031097090016e+00, 5.374285667032e-04, 5.8430e-02, 1.3359e-03, - 2DIAGNOSTIC, 20, -1.041635565581e+00, 5.924014886805e-04, 6.0208e-02, 1.7781e-03, - 2DIAGNOSTIC, 21, -1.046907693467e+00, 6.640675096816e-04, 6.1774e-02, 1.5659e-03, - 2DIAGNOSTIC, 22, -1.049577766960e+00, 7.478323559341e-04, 6.3283e-02, 1.5092e-03, - 2DIAGNOSTIC, 23, -1.052466602718e+00, 8.138106712672e-04, 6.4625e-02, 1.3418e-03, - 2DIAGNOSTIC, 24, -1.059700694442e+00, 8.983611785301e-04, 6.6157e-02, 1.5321e-03, - 2DIAGNOSTIC, 25, -1.064166272893e+00, 9.537132031088e-04, 6.8115e-02, 1.9581e-03, - 2DIAGNOSTIC, 26, -1.062671671557e+00, 9.125337390937e-04, 6.9679e-02, 1.5640e-03, - 2DIAGNOSTIC, 27, -1.063964922158e+00, 8.280019766453e-04, 7.1023e-02, 1.3440e-03, - 2DIAGNOSTIC, 28, -1.065770012238e+00, 7.258694494405e-04, 7.2335e-02, 1.3120e-03, - 2DIAGNOSTIC, 29, -1.066696549671e+00, 5.462068204288e-04, 7.3662e-02, 1.3270e-03, - 2DIAGNOSTIC, 30, -1.067620649904e+00, 4.316345154221e-04, 7.4990e-02, 1.3280e-03, - 2DIAGNOSTIC, 31, -1.069185045846e+00, 3.456897169924e-04, 7.7125e-02, 2.1350e-03, - 2DIAGNOSTIC, 32, -1.069621640339e+00, 2.597556885410e-04, 7.8647e-02, 1.5221e-03, - 2DIAGNOSTIC, 33, -1.070858364040e+00, 1.874816470570e-04, 8.0187e-02, 1.5399e-03, - 2DIAGNOSTIC, 34, -1.075614135571e+00, 1.976061211801e-04, 8.1508e-02, 1.3208e-03, - 2DIAGNOSTIC, 35, -1.082550443758e+00, 2.774702214806e-04, 8.3111e-02, 1.6031e-03, - 2DIAGNOSTIC, 36, -1.084768269296e+00, 3.307623392727e-04, 8.5043e-02, 1.9319e-03, - 2DIAGNOSTIC, 37, -1.086011332571e+00, 3.688523632207e-04, 8.6525e-02, 1.4820e-03, - 2DIAGNOSTIC, 38, -1.086972862667e+00, 3.902803493937e-04, 8.8026e-02, 1.5011e-03, - 2DIAGNOSTIC, 39, -1.087051713580e+00, 3.799167601776e-04, 8.9734e-02, 1.7080e-03, - 2DIAGNOSTIC, 40, -1.087423292511e+00, 3.419110787616e-04, 9.1206e-02, 1.4720e-03, - 2DIAGNOSTIC, 41, -1.088899090119e+00, 2.936441036649e-04, 9.2593e-02, 1.3871e-03, - 2DIAGNOSTIC, 42, -1.091946779757e+00, 2.428385022483e-04, 9.4126e-02, 1.5321e-03, - 2DIAGNOSTIC, 43, -1.092700412234e+00, 1.833475223427e-04, 9.5435e-02, 1.3092e-03, - 2DIAGNOSTIC, 44, -1.094108622185e+00, 1.465666928427e-04, 9.6829e-02, 1.3940e-03, - 2DIAGNOSTIC, 45, -1.094496323375e+00, 1.415724199255e-04, 9.8834e-02, 2.0049e-03, - 2DIAGNOSTIC, 46, -1.094632959697e+00, 1.369690933278e-04, 1.0070e-01, 1.8651e-03, - 2DIAGNOSTIC, 47, -1.094676785705e+00, 1.266290650033e-04, 1.0203e-01, 1.3299e-03, - 2DIAGNOSTIC, 48, -1.094852870774e+00, 1.111218692178e-04, 1.0374e-01, 1.7121e-03, - 2DIAGNOSTIC, 49, -1.094985534487e+00, 8.701506165965e-05, 1.0502e-01, 1.2789e-03, - 2DIAGNOSTIC, 50, -1.095089179505e+00, 5.817455137637e-05, 1.0671e-01, 1.6921e-03, - 2DIAGNOSTIC, 51, -1.095177535392e+00, 3.297299547237e-05, 1.0803e-01, 1.3208e-03, - 2DIAGNOSTIC, 52, -1.095343254324e+00, 2.235266942286e-05, 1.0980e-01, 1.7700e-03, - 2DIAGNOSTIC, 53, -1.095379006349e+00, 1.388170400791e-05, 1.1191e-01, 2.1110e-03, - 2DIAGNOSTIC, 54, -1.095416350561e+00, 1.162668101236e-05, 1.1365e-01, 1.7350e-03, - 2DIAGNOSTIC, 55, -1.095544384172e+00, 1.091838356760e-05, 1.1596e-01, 2.3100e-03, - 2DIAGNOSTIC, 56, -1.096313745870e+00, 1.358693865083e-05, 1.1849e-01, 2.5289e-03, - 2DIAGNOSTIC, 57, -1.096320253470e+00, 1.503021665009e-05, 1.1986e-01, 1.3721e-03, - 2DIAGNOSTIC, 58, -1.096354432665e+00, 1.604763063659e-05, 1.2123e-01, 1.3690e-03, - 2DIAGNOSTIC, 59, -1.096420434896e+00, 1.649663989318e-05, 1.2268e-01, 1.4532e-03, - 2DIAGNOSTIC, 60, -1.096484755025e+00, 1.611994281957e-05, 1.2429e-01, 1.6069e-03, - 2DIAGNOSTIC, 61, -1.096492439835e+00, 1.460321075218e-05, 1.2626e-01, 1.9751e-03, - 2DIAGNOSTIC, 62, -1.095773620667e+00, 9.393844446027e-06, 1.2802e-01, 1.7571e-03, - 2DIAGNOSTIC, 63, -1.095773655651e+00, 3.798651455746e-06, 1.2955e-01, 1.5268e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.889945348906e-01, 1.797693134862e+308, 1.7724e-01, 4.7697e-02, - 2DIAGNOSTIC, 2, -6.895811709922e-01, 1.797693134862e+308, 1.8047e-01, 3.2220e-03, - 2DIAGNOSTIC, 3, -6.917006906759e-01, 1.797693134862e+308, 1.8330e-01, 2.8381e-03, - 2DIAGNOSTIC, 4, -6.949506346649e-01, 1.797693134862e+308, 1.8564e-01, 2.3320e-03, - 2DIAGNOSTIC, 5, -6.990102753074e-01, 1.797693134862e+308, 1.8794e-01, 2.3079e-03, - 2DIAGNOSTIC, 6, -7.048109925128e-01, 1.797693134862e+308, 1.9038e-01, 2.4400e-03, - 2DIAGNOSTIC, 7, -7.139527551659e-01, 1.797693134862e+308, 1.9314e-01, 2.7521e-03, - 2DIAGNOSTIC, 8, -7.206650525107e-01, 1.797693134862e+308, 1.9814e-01, 4.9989e-03, - 2DIAGNOSTIC, 9, -7.205884087609e-01, 1.797693134862e+308, 2.0041e-01, 2.2721e-03, - 2DIAGNOSTIC, 10, -7.208648746740e-01, 3.598601901896e-03, 2.0285e-01, 2.4440e-03, - 2DIAGNOSTIC, 11, -7.212611226711e-01, 3.178552207387e-03, 2.0534e-01, 2.4838e-03, - 2DIAGNOSTIC, 12, -7.219579268188e-01, 2.582873967548e-03, 2.0816e-01, 2.8269e-03, - 2DIAGNOSTIC, 13, -7.230820040785e-01, 1.944516658293e-03, 2.1119e-01, 3.0301e-03, - 2DIAGNOSTIC, 14, -7.247945485544e-01, 1.366409198982e-03, 2.1426e-01, 3.0670e-03, - 2DIAGNOSTIC, 15, -7.264546681873e-01, 8.955147361144e-04, 2.1690e-01, 2.6360e-03, - 2DIAGNOSTIC, 16, -7.275607039393e-01, 5.701555867231e-04, 2.2082e-01, 3.9239e-03, - 2DIAGNOSTIC, 17, -7.279039005280e-01, 4.496188355424e-04, 2.2337e-01, 2.5539e-03, - 2DIAGNOSTIC, 18, -7.287337568557e-01, 4.685865751225e-04, 2.2588e-01, 2.5101e-03, - 2DIAGNOSTIC, 19, -7.292807038099e-01, 4.514525922431e-04, 2.2837e-01, 2.4900e-03, - 2DIAGNOSTIC, 20, -7.300753564085e-01, 4.151102055679e-04, 2.3192e-01, 3.5498e-03, - 2DIAGNOSTIC, 21, -7.304785779025e-01, 3.587786837869e-04, 2.3496e-01, 3.0379e-03, - 2DIAGNOSTIC, 22, -7.307710530780e-01, 2.923380592661e-04, 2.3811e-01, 3.1531e-03, - 2DIAGNOSTIC, 23, -7.313833815526e-01, 2.341692686552e-04, 2.4156e-01, 3.4430e-03, - 2DIAGNOSTIC, 24, -7.317384190539e-01, 1.923895570168e-04, 2.4413e-01, 2.5771e-03, - 2DIAGNOSTIC, 25, -7.322709892888e-01, 1.703176835475e-04, 2.4669e-01, 2.5520e-03, - 2DIAGNOSTIC, 26, -7.334246168987e-01, 1.683884028768e-04, 2.4956e-01, 2.8760e-03, - 2DIAGNOSTIC, 27, -7.358015502759e-01, 1.901428834146e-04, 2.5374e-01, 4.1821e-03, - 2DIAGNOSTIC, 28, -7.359630675847e-01, 2.056588580819e-04, 2.5640e-01, 2.6588e-03, - 2DIAGNOSTIC, 29, -7.362813388468e-01, 2.128065683726e-04, 2.5915e-01, 2.7468e-03, - 2DIAGNOSTIC, 30, -7.366054636346e-01, 2.144037366788e-04, 2.6191e-01, 2.7630e-03, - 2DIAGNOSTIC, 31, -7.369148973589e-01, 2.044036339846e-04, 2.6460e-01, 2.6879e-03, - 2DIAGNOSTIC, 32, -7.371979764177e-01, 1.822511534980e-04, 2.6747e-01, 2.8701e-03, - 2DIAGNOSTIC, 33, -7.376926698438e-01, 1.575123469022e-04, 2.7095e-01, 3.4800e-03, - 2DIAGNOSTIC, 34, -7.380404260174e-01, 1.278103069121e-04, 2.7378e-01, 2.8241e-03, - 2DIAGNOSTIC, 35, -7.383401643747e-01, 9.702930379215e-05, 2.7771e-01, 3.9341e-03, - 2DIAGNOSTIC, 36, -7.384775188898e-01, 7.222581174533e-05, 2.8063e-01, 2.9209e-03, - 2DIAGNOSTIC, 37, -7.386113433833e-01, 6.864591900665e-05, 2.8366e-01, 3.0279e-03, - 2DIAGNOSTIC, 38, -7.386800383417e-01, 6.109766138527e-05, 2.8828e-01, 4.6258e-03, - 2DIAGNOSTIC, 39, -7.386623854222e-01, 5.114601895574e-05, 2.9110e-01, 2.8169e-03, - 2DIAGNOSTIC, 40, -7.387052561393e-01, 4.049102962894e-05, 2.9383e-01, 2.7320e-03, - 2DIAGNOSTIC, 41, -7.387472595541e-01, 2.992881745677e-05, 2.9660e-01, 2.7702e-03, - 2DIAGNOSTIC, 42, -7.387984169027e-01, 2.012665908497e-05, 2.9969e-01, 3.0830e-03, - 2DIAGNOSTIC, 43, -7.387614680737e-01, 1.304986986835e-05, 3.0347e-01, 3.7820e-03, - 2DIAGNOSTIC, 44, -7.387943123120e-01, 8.485251225033e-06, 3.0625e-01, 2.7800e-03, - 2DIAGNOSTIC, 45, -7.388154506903e-01, 6.150971695863e-06, 3.0905e-01, 2.8040e-03, - 2DIAGNOSTIC, 46, -7.388521176024e-01, 4.834547919861e-06, 3.1219e-01, 3.1381e-03, - 2DIAGNOSTIC, 47, -7.388592612210e-01, 4.329446299547e-06, 3.1572e-01, 3.5269e-03, - 2DIAGNOSTIC, 48, -7.388597816142e-01, 4.081253164909e-06, 3.2471e-01, 8.9881e-03, - 2DIAGNOSTIC, 49, -7.388597815998e-01, 3.378475606573e-06, 3.3272e-01, 8.0171e-03, - 2DIAGNOSTIC, 50, -7.388597815998e-01, 2.765077134370e-06, 3.3564e-01, 2.9221e-03, - 2DIAGNOSTIC, 51, -7.388597815998e-01, 2.278206909269e-06, 3.3873e-01, 3.0890e-03, - 2DIAGNOSTIC, 52, -7.388597815998e-01, 2.047805477717e-06, 3.4175e-01, 3.0189e-03, - 2DIAGNOSTIC, 53, -7.388597815998e-01, 1.416480230620e-06, 3.4481e-01, 3.0591e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.759725594543e-01, 1.797693134862e+308, 4.1091e-01, 6.6095e-02, - 2DIAGNOSTIC, 2, -5.763170456595e-01, 1.797693134862e+308, 4.2425e-01, 1.3348e-02, - 2DIAGNOSTIC, 3, -5.768146554633e-01, 1.797693134862e+308, 4.3799e-01, 1.3734e-02, - 2DIAGNOSTIC, 4, -5.774737461645e-01, 1.797693134862e+308, 4.5117e-01, 1.3185e-02, - 2DIAGNOSTIC, 5, -5.784419696053e-01, 1.797693134862e+308, 4.6364e-01, 1.2463e-02, - 2DIAGNOSTIC, 6, -5.799475629399e-01, 1.797693134862e+308, 4.7613e-01, 1.2491e-02, - 2DIAGNOSTIC, 7, -5.811704023563e-01, 1.797693134862e+308, 4.9379e-01, 1.7660e-02, - 2DIAGNOSTIC, 8, -5.813869133729e-01, 1.797693134862e+308, 5.0607e-01, 1.2283e-02, - 2DIAGNOSTIC, 9, -5.832473239503e-01, 1.797693134862e+308, 5.1998e-01, 1.3906e-02, - 2DIAGNOSTIC, 10, -5.845057318149e-01, 9.728346368770e-04, 5.3264e-01, 1.2667e-02, - 2DIAGNOSTIC, 11, -5.847472648409e-01, 9.285721272580e-04, 5.4723e-01, 1.4585e-02, - 2DIAGNOSTIC, 12, -5.851594372834e-01, 8.404810089337e-04, 5.6354e-01, 1.6308e-02, - 2DIAGNOSTIC, 13, -5.852611708266e-01, 7.135112636973e-04, 5.7655e-01, 1.3014e-02, - 2DIAGNOSTIC, 14, -5.853960235542e-01, 5.672672946855e-04, 5.9084e-01, 1.4291e-02, - 2DIAGNOSTIC, 15, -5.854726751908e-01, 4.215211605298e-04, 6.0369e-01, 1.2845e-02, - 2DIAGNOSTIC, 16, -5.855849105694e-01, 3.047242929082e-04, 6.1665e-01, 1.2960e-02, - 2DIAGNOSTIC, 17, -5.861121680662e-01, 2.249808735214e-04, 6.3295e-01, 1.6302e-02, - 2DIAGNOSTIC, 18, -5.864210474437e-01, 1.464312642805e-04, 6.4672e-01, 1.3770e-02, - 2DIAGNOSTIC, 19, -5.866345665413e-01, 1.152990547969e-04, 6.6651e-01, 1.9792e-02, - 2DIAGNOSTIC, 20, -5.866839921347e-01, 1.087353687563e-04, 6.8002e-01, 1.3511e-02, - 2DIAGNOSTIC, 21, -5.868361375713e-01, 1.018160999091e-04, 6.9385e-01, 1.3827e-02, - 2DIAGNOSTIC, 22, -5.869164150243e-01, 9.684072072296e-05, 7.0813e-01, 1.4279e-02, - 2DIAGNOSTIC, 23, -5.869634028643e-01, 8.634393256129e-05, 7.2209e-01, 1.3964e-02, - 2DIAGNOSTIC, 24, -5.870341098518e-01, 7.303817588990e-05, 7.3635e-01, 1.4253e-02, - 2DIAGNOSTIC, 25, -5.871782974526e-01, 5.848709267001e-05, 7.5017e-01, 1.3826e-02, - 2DIAGNOSTIC, 26, -5.871449764671e-01, 4.090864208531e-05, 7.6385e-01, 1.3683e-02, - 2DIAGNOSTIC, 27, -5.875471265037e-01, 3.759311272584e-05, 7.7969e-01, 1.5832e-02, - 2DIAGNOSTIC, 28, -5.876659402168e-01, 3.827418923399e-05, 7.9427e-01, 1.4580e-02, - 2DIAGNOSTIC, 29, -5.878309981440e-01, 4.176594633868e-05, 8.0705e-01, 1.2788e-02, - 2DIAGNOSTIC, 30, -5.879544599478e-01, 4.395137088000e-05, 8.2316e-01, 1.6105e-02, - 2DIAGNOSTIC, 31, -5.879812143906e-01, 4.471680028417e-05, 8.3627e-01, 1.3114e-02, - 2DIAGNOSTIC, 32, -5.880090009252e-01, 4.290971672537e-05, 8.5249e-01, 1.6214e-02, - 2DIAGNOSTIC, 33, -5.880310536640e-01, 3.820497816164e-05, 8.6504e-01, 1.2556e-02, - 2DIAGNOSTIC, 34, -5.880472924667e-01, 3.146533226925e-05, 8.7959e-01, 1.4545e-02, - 2DIAGNOSTIC, 35, -5.880621512189e-01, 2.449380181678e-05, 8.9447e-01, 1.4884e-02, - 2DIAGNOSTIC, 36, -5.880677929555e-01, 1.518399115898e-05, 9.0985e-01, 1.5378e-02, - 2DIAGNOSTIC, 37, -5.880732489208e-01, 1.037557176434e-05, 9.2461e-01, 1.4755e-02, - 2DIAGNOSTIC, 38, -5.880783336706e-01, 6.459035419595e-06, 9.3713e-01, 1.2521e-02, - 2DIAGNOSTIC, 39, -5.880828580110e-01, 4.281838379239e-06, 9.5002e-01, 1.2891e-02, - 2DIAGNOSTIC, 40, -5.880852545407e-01, 3.407471723133e-06, 9.6349e-01, 1.3476e-02, - 2DIAGNOSTIC, 41, -5.880867916485e-01, 2.657830340376e-06, 9.7942e-01, 1.5930e-02, - 2DIAGNOSTIC, 42, -5.880905365472e-01, 2.126184381553e-06, 9.9849e-01, 1.9062e-02, - 2DIAGNOSTIC, 43, -5.880901146152e-01, 1.729057744711e-06, 1.0126e+00, 1.4138e-02, - 2DIAGNOSTIC, 44, -5.880920581794e-01, 1.453235865687e-06, 1.0262e+00, 1.3550e-02, - 2DIAGNOSTIC, 45, -5.880936678421e-01, 1.297033497650e-06, 1.0460e+00, 1.9813e-02, - 2DIAGNOSTIC, 46, -5.880941118605e-01, 1.154649367840e-06, 1.0865e+00, 4.0486e-02, - 2DIAGNOSTIC, 47, -5.880941118597e-01, 1.029807143324e-06, 1.1226e+00, 3.6130e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.874631796866e-01, 1.797693134862e+308, 1.3225e+00, 1.9987e-01, - Elapsed time (stage 1): 1.3499e+00 - - -Total elapsed time: 2.8811e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:14:40 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 37 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 66 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 88.17% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 88.17% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[19593 6653 8211 10917 505 1152 8813 0 0 290 14146 2386 - 994 3910 1342 1710 3854 1284 704 0 256 0 393 0 - 0 0 0 0 0 0 0 0 0 0 0 0 - 0] -[208524 79639 76215 34356 8985 9341 4750 10339 8234 9157 - 6084 2329 7844 6653 5789 1248 3897 1568 0 650 - 380 191 0 385 475 531 346 294 324 0 - 192 0 0 0 0 0 0] -[ 0 9222 10451 7701 0 0 0 7187 269 7582 0 0 - 0 18976 0 0 5770 0 0 7031 1703 475 10859 0 - 0 217 0 0 0 0 16949 4412 0 0 12499 0 - 474] -[ 0 159495 156401 152246 0 0 0 14013 0 0 - 936 528 0 653 0 253 0 1078 0 722 - 10543 6503 743 285 633 7472 875 2418 911 753 - 540 552 198 3694 0 0 4342] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:24:11 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:24:16 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:01 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:01 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:01 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:12 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:28:16 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC003 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:29:15 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:29:40 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:32:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:32:41 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:33:59 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:33:59 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5597d452dd20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [76.2585, 114.949, -133.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5597d43a4730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fef21df2010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5597d4531020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 61.5673, -112.413] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5597d45370c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fef1e733010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5597d4547840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [76.2585, 114.949, -133.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5597d4533890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fef19a5f010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5597d454b3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 61.5673, -112.413] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5597d453a130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fef163a0010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.129218364120e-01, 1.797693134862e+308, 2.3593e-01, 2.3593e-01, - 2DIAGNOSTIC, 2, -5.144782080050e-01, 1.797693134862e+308, 2.3757e-01, 1.6360e-03, - 2DIAGNOSTIC, 3, -5.151383338229e-01, 1.797693134862e+308, 2.3898e-01, 1.4150e-03, - 2DIAGNOSTIC, 4, -5.136041880371e-01, 1.797693134862e+308, 2.4038e-01, 1.3928e-03, - 2DIAGNOSTIC, 5, -5.138978891814e-01, 1.797693134862e+308, 2.4156e-01, 1.1830e-03, - 2DIAGNOSTIC, 6, -5.141049266963e-01, 1.797693134862e+308, 2.4274e-01, 1.1849e-03, - 2DIAGNOSTIC, 7, -5.151879143052e-01, 1.797693134862e+308, 2.4398e-01, 1.2410e-03, - 2DIAGNOSTIC, 8, -5.170928810987e-01, 1.797693134862e+308, 2.4520e-01, 1.2190e-03, - 2DIAGNOSTIC, 9, -5.193223073982e-01, 1.797693134862e+308, 2.4647e-01, 1.2650e-03, - 2DIAGNOSTIC, 10, -5.243364811757e-01, 9.831256272770e-04, 2.4797e-01, 1.5059e-03, - 2DIAGNOSTIC, 11, -5.367072138367e-01, 1.796369975047e-03, 2.4946e-01, 1.4832e-03, - 2DIAGNOSTIC, 12, -5.494222720014e-01, 2.939521187668e-03, 2.5092e-01, 1.4572e-03, - 2DIAGNOSTIC, 13, -5.736584068122e-01, 4.653080826202e-03, 2.5259e-01, 1.6758e-03, - 2DIAGNOSTIC, 14, -5.784635860948e-01, 5.788107663026e-03, 2.5405e-01, 1.4591e-03, - 2DIAGNOSTIC, 15, -5.816441639253e-01, 6.364148029817e-03, 2.5618e-01, 2.1300e-03, - 2DIAGNOSTIC, 16, -5.845058529767e-01, 6.385451764674e-03, 2.5832e-01, 2.1431e-03, - 2DIAGNOSTIC, 17, -5.844155750048e-01, 5.842251915190e-03, 2.5979e-01, 1.4648e-03, - 2DIAGNOSTIC, 18, -5.850252394467e-01, 4.894965490932e-03, 2.6121e-01, 1.4231e-03, - 2DIAGNOSTIC, 19, -5.880148996838e-01, 3.747829368221e-03, 2.6289e-01, 1.6761e-03, - 2DIAGNOSTIC, 20, -5.884987646171e-01, 2.521619560949e-03, 2.6436e-01, 1.4760e-03, - 2DIAGNOSTIC, 21, -5.891501233284e-01, 1.508281890006e-03, 2.6604e-01, 1.6720e-03, - 2DIAGNOSTIC, 22, -5.919872053176e-01, 8.057810970473e-04, 2.6750e-01, 1.4651e-03, - 2DIAGNOSTIC, 23, -6.020635382241e-01, 8.589130941480e-04, 2.6896e-01, 1.4620e-03, - 2DIAGNOSTIC, 24, -6.214880550051e-01, 1.335518177456e-03, 2.7089e-01, 1.9240e-03, - 2DIAGNOSTIC, 25, -6.305773133427e-01, 1.884076842629e-03, 2.7323e-01, 2.3389e-03, - 2DIAGNOSTIC, 26, -6.315624049464e-01, 2.287218448460e-03, 2.7493e-01, 1.7061e-03, - 2DIAGNOSTIC, 27, -6.342687335623e-01, 2.497292334289e-03, 2.7659e-01, 1.6570e-03, - 2DIAGNOSTIC, 28, -6.353117838030e-01, 2.481342965127e-03, 2.7829e-01, 1.7061e-03, - 2DIAGNOSTIC, 29, -6.356373539229e-01, 2.284632073409e-03, 2.7977e-01, 1.4749e-03, - 2DIAGNOSTIC, 30, -6.335660885609e-01, 1.861296291825e-03, 2.8146e-01, 1.6892e-03, - 2DIAGNOSTIC, 31, -6.367037102037e-01, 1.359178979737e-03, 2.8311e-01, 1.6539e-03, - 2DIAGNOSTIC, 32, -6.364759290948e-01, 8.028620940656e-04, 2.8543e-01, 2.3210e-03, - 2DIAGNOSTIC, 33, -6.369593198413e-01, 3.589793393049e-04, 2.8695e-01, 1.5180e-03, - 2DIAGNOSTIC, 34, -6.374769403720e-01, 1.957347455231e-04, 2.8863e-01, 1.6820e-03, - 2DIAGNOSTIC, 35, -6.373409014640e-01, 1.500670949190e-04, 2.9004e-01, 1.4069e-03, - 2DIAGNOSTIC, 36, -6.348987576708e-01, 7.210728500347e-05, 2.9147e-01, 1.4269e-03, - 2DIAGNOSTIC, 37, -6.354220240265e-01, 3.462721565099e-05, 2.9321e-01, 1.7438e-03, - 2DIAGNOSTIC, 38, -6.350729626003e-01, 4.474387306039e-06, 2.9467e-01, 1.4601e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.885689773305e-01, 1.797693134862e+308, 5.3199e-01, 2.3732e-01, - 2DIAGNOSTIC, 2, -4.881208611829e-01, 1.797693134862e+308, 5.3474e-01, 2.7490e-03, - 2DIAGNOSTIC, 3, -4.902107688514e-01, 1.797693134862e+308, 5.3728e-01, 2.5399e-03, - 2DIAGNOSTIC, 4, -4.929269381903e-01, 1.797693134862e+308, 5.3979e-01, 2.5129e-03, - 2DIAGNOSTIC, 5, -4.945458805604e-01, 1.797693134862e+308, 5.4218e-01, 2.3890e-03, - 2DIAGNOSTIC, 6, -5.022999882591e-01, 1.797693134862e+308, 5.4476e-01, 2.5830e-03, - 2DIAGNOSTIC, 7, -5.050235241236e-01, 1.797693134862e+308, 5.4699e-01, 2.2249e-03, - 2DIAGNOSTIC, 8, -5.105024691287e-01, 1.797693134862e+308, 5.4984e-01, 2.8529e-03, - 2DIAGNOSTIC, 9, -5.155303826153e-01, 1.797693134862e+308, 5.5221e-01, 2.3711e-03, - 2DIAGNOSTIC, 10, -5.159432299304e-01, 4.120928513070e-03, 5.5456e-01, 2.3439e-03, - 2DIAGNOSTIC, 11, -5.199045039107e-01, 4.018005783703e-03, 5.5683e-01, 2.2759e-03, - 2DIAGNOSTIC, 12, -5.218686403415e-01, 3.638175689870e-03, 5.5972e-01, 2.8920e-03, - 2DIAGNOSTIC, 13, -5.230753518275e-01, 3.131066570136e-03, 5.6295e-01, 3.2260e-03, - 2DIAGNOSTIC, 14, -5.235879712805e-01, 2.546067479877e-03, 5.6683e-01, 3.8791e-03, - 2DIAGNOSTIC, 15, -5.237794612391e-01, 1.873243298097e-03, 5.6920e-01, 2.3730e-03, - 2DIAGNOSTIC, 16, -5.234899815822e-01, 1.376967915905e-03, 5.7153e-01, 2.3310e-03, - 2DIAGNOSTIC, 17, -5.240135759215e-01, 9.167369425952e-04, 5.7385e-01, 2.3129e-03, - 2DIAGNOSTIC, 18, -5.244148356029e-01, 6.028021892684e-04, 5.7607e-01, 2.2280e-03, - 2DIAGNOSTIC, 19, -5.247539080013e-01, 4.254902543434e-04, 5.7836e-01, 2.2860e-03, - 2DIAGNOSTIC, 20, -5.256053449780e-01, 2.601448017661e-04, 5.8057e-01, 2.2061e-03, - 2DIAGNOSTIC, 21, -5.261883110198e-01, 2.056843908268e-04, 5.8282e-01, 2.2571e-03, - 2DIAGNOSTIC, 22, -5.269967445279e-01, 2.061479648098e-04, 5.8535e-01, 2.5270e-03, - 2DIAGNOSTIC, 23, -5.289858447048e-01, 2.635449427985e-04, 5.8817e-01, 2.8150e-03, - 2DIAGNOSTIC, 24, -5.307859780916e-01, 3.435408734680e-04, 5.9025e-01, 2.0881e-03, - 2DIAGNOSTIC, 25, -5.312179646191e-01, 3.983521713277e-04, 5.9231e-01, 2.0590e-03, - 2DIAGNOSTIC, 26, -5.325903812594e-01, 4.348684616263e-04, 5.9440e-01, 2.0859e-03, - 2DIAGNOSTIC, 27, -5.365781628434e-01, 5.191397403934e-04, 5.9667e-01, 2.2731e-03, - 2DIAGNOSTIC, 28, -5.424476179714e-01, 6.686919317436e-04, 5.9996e-01, 3.2880e-03, - 2DIAGNOSTIC, 29, -5.462328482461e-01, 8.195950846301e-04, 6.0237e-01, 2.4130e-03, - 2DIAGNOSTIC, 30, -5.534653068102e-01, 1.030206347029e-03, 6.0473e-01, 2.3532e-03, - 2DIAGNOSTIC, 31, -5.548323105027e-01, 1.162068082993e-03, 6.0813e-01, 3.4080e-03, - 2DIAGNOSTIC, 32, -5.573332528775e-01, 1.231280460448e-03, 6.1050e-01, 2.3620e-03, - 2DIAGNOSTIC, 33, -5.627820745640e-01, 1.300140771539e-03, 6.1279e-01, 2.2960e-03, - 2DIAGNOSTIC, 34, -5.670613910982e-01, 1.335818599434e-03, 6.1605e-01, 3.2630e-03, - 2DIAGNOSTIC, 35, -5.730533672217e-01, 1.340709679346e-03, 6.1977e-01, 3.7110e-03, - 2DIAGNOSTIC, 36, -5.799598236877e-01, 1.340595479229e-03, 6.2333e-01, 3.5639e-03, - 2DIAGNOSTIC, 37, -5.810320571837e-01, 1.284892894373e-03, 6.2567e-01, 2.3401e-03, - 2DIAGNOSTIC, 38, -5.847412611729e-01, 1.245776903878e-03, 6.2908e-01, 3.4080e-03, - 2DIAGNOSTIC, 39, -5.880782916799e-01, 1.184573772946e-03, 6.3147e-01, 2.3949e-03, - 2DIAGNOSTIC, 40, -5.909687171168e-01, 1.147589224850e-03, 6.3392e-01, 2.4471e-03, - 2DIAGNOSTIC, 41, -5.945301946485e-01, 1.066375034950e-03, 6.3634e-01, 2.4161e-03, - 2DIAGNOSTIC, 42, -5.969826175083e-01, 9.493978085308e-04, 6.3966e-01, 3.3221e-03, - 2DIAGNOSTIC, 43, -5.982502865966e-01, 8.306199308532e-04, 6.4199e-01, 2.3320e-03, - 2DIAGNOSTIC, 44, -6.003626220414e-01, 7.140191212692e-04, 6.4498e-01, 2.9919e-03, - 2DIAGNOSTIC, 45, -6.035131556560e-01, 6.394828379788e-04, 6.4738e-01, 2.4030e-03, - 2DIAGNOSTIC, 46, -6.356730694739e-01, 9.510733103689e-04, 6.5009e-01, 2.7030e-03, - 2DIAGNOSTIC, 47, -6.970647965934e-01, 1.835348549783e-03, 6.5343e-01, 3.3450e-03, - 2DIAGNOSTIC, 48, -7.130937048260e-01, 2.694696914501e-03, 6.5606e-01, 2.6259e-03, - 2DIAGNOSTIC, 49, -7.592094279859e-01, 3.772590172938e-03, 6.5858e-01, 2.5251e-03, - 2DIAGNOSTIC, 50, -7.693861746605e-01, 4.560734351117e-03, 6.6075e-01, 2.1651e-03, - 2DIAGNOSTIC, 51, -7.726582336440e-01, 4.936915960327e-03, 6.6383e-01, 3.0820e-03, - 2DIAGNOSTIC, 52, -7.737932009181e-01, 4.853821269572e-03, 6.6809e-01, 4.2639e-03, - 2DIAGNOSTIC, 53, -7.738198903045e-01, 4.324606071112e-03, 6.7075e-01, 2.6569e-03, - 2DIAGNOSTIC, 54, -7.738283424747e-01, 3.433367485910e-03, 6.7309e-01, 2.3360e-03, - 2DIAGNOSTIC, 55, -7.740120880507e-01, 2.285460299308e-03, 6.7574e-01, 2.6541e-03, - 2DIAGNOSTIC, 56, -7.741192555610e-01, 1.247770405834e-03, 6.7841e-01, 2.6681e-03, - 2DIAGNOSTIC, 57, -7.740329180824e-01, 6.640731623864e-04, 6.8076e-01, 2.3491e-03, - 2DIAGNOSTIC, 58, -7.739712133788e-01, 1.670408995507e-04, 6.8338e-01, 2.6231e-03, - 2DIAGNOSTIC, 59, -7.738628792737e-01, 4.930625197003e-05, 6.8594e-01, 2.5561e-03, - 2DIAGNOSTIC, 60, -7.734038470986e-01, 8.872536436409e-06, 6.8820e-01, 2.2669e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.416062555593e-01, 1.797693134862e+308, 9.4902e-01, 2.6081e-01, - 2DIAGNOSTIC, 2, -6.430550036888e-01, 1.797693134862e+308, 9.6234e-01, 1.3325e-02, - 2DIAGNOSTIC, 3, -6.452316927815e-01, 1.797693134862e+308, 9.7582e-01, 1.3477e-02, - 2DIAGNOSTIC, 4, -6.486295223682e-01, 1.797693134862e+308, 9.8893e-01, 1.3109e-02, - 2DIAGNOSTIC, 5, -6.519079145660e-01, 1.797693134862e+308, 1.0021e+00, 1.3156e-02, - 2DIAGNOSTIC, 6, -6.532456161731e-01, 1.797693134862e+308, 1.0171e+00, 1.4992e-02, - 2DIAGNOSTIC, 7, -6.539861671828e-01, 1.797693134862e+308, 1.0320e+00, 1.4916e-02, - 2DIAGNOSTIC, 8, -6.540914970222e-01, 1.797693134862e+308, 1.0467e+00, 1.4734e-02, - 2DIAGNOSTIC, 9, -6.542640292986e-01, 1.797693134862e+308, 1.0625e+00, 1.5741e-02, - 2DIAGNOSTIC, 10, -6.547822280690e-01, 1.398293278377e-03, 1.0753e+00, 1.2870e-02, - 2DIAGNOSTIC, 11, -6.549062324693e-01, 1.007464750735e-03, 1.0982e+00, 2.2825e-02, - 2DIAGNOSTIC, 12, -6.549368708098e-01, 6.466974767329e-04, 1.1151e+00, 1.6908e-02, - 2DIAGNOSTIC, 13, -6.549445550124e-01, 3.558809646012e-04, 1.1298e+00, 1.4771e-02, - 2DIAGNOSTIC, 14, -6.549354999997e-01, 1.781967496233e-04, 1.1427e+00, 1.2838e-02, - 2DIAGNOSTIC, 15, -6.549141192013e-01, 1.018939428818e-04, 1.1572e+00, 1.4544e-02, - 2DIAGNOSTIC, 16, -6.549253481723e-01, 6.222008934324e-05, 1.1721e+00, 1.4920e-02, - 2DIAGNOSTIC, 17, -6.549184350460e-01, 4.064893168279e-05, 1.1871e+00, 1.4915e-02, - 2DIAGNOSTIC, 18, -6.548962116451e-01, 1.999062134980e-05, 1.2017e+00, 1.4621e-02, - 2DIAGNOSTIC, 19, -6.548913865089e-01, 3.399533619872e-06, 1.2188e+00, 1.7107e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.539261527400e-01, 1.797693134862e+308, 1.6298e+00, 4.1105e-01, - 2DIAGNOSTIC, 2, -5.541606682492e-01, 1.797693134862e+308, 1.7129e+00, 8.3088e-02, - 2DIAGNOSTIC, 3, -5.544822611132e-01, 1.797693134862e+308, 1.7960e+00, 8.3045e-02, - 2DIAGNOSTIC, 4, -5.554148862067e-01, 1.797693134862e+308, 1.8916e+00, 9.5634e-02, - 2DIAGNOSTIC, 5, -5.557637511407e-01, 1.797693134862e+308, 1.9999e+00, 1.0831e-01, - 2DIAGNOSTIC, 6, -5.560223268625e-01, 1.797693134862e+308, 2.0828e+00, 8.2864e-02, - 2DIAGNOSTIC, 7, -5.563904478635e-01, 1.797693134862e+308, 2.1655e+00, 8.2721e-02, - 2DIAGNOSTIC, 8, -5.576897837177e-01, 1.797693134862e+308, 2.2778e+00, 1.1233e-01, - 2DIAGNOSTIC, 9, -5.581491842893e-01, 1.797693134862e+308, 2.3690e+00, 9.1133e-02, - 2DIAGNOSTIC, 10, -5.584123877405e-01, 5.511639796816e-04, 2.4460e+00, 7.7005e-02, - 2DIAGNOSTIC, 11, -5.584912105560e-01, 4.972669944089e-04, 2.5349e+00, 8.8966e-02, - 2DIAGNOSTIC, 12, -5.585646036916e-01, 4.213465809485e-04, 2.6229e+00, 8.7956e-02, - 2DIAGNOSTIC, 13, -5.586168968321e-01, 3.324578168920e-04, 2.7929e+00, 1.7000e-01, - 2DIAGNOSTIC, 14, -5.586274250321e-01, 2.602281941887e-04, 2.8749e+00, 8.1968e-02, - 2DIAGNOSTIC, 15, -5.586469387710e-01, 1.871001358868e-04, 2.9561e+00, 8.1281e-02, - 2DIAGNOSTIC, 16, -5.586646406049e-01, 1.153241243744e-04, 3.0383e+00, 8.2199e-02, - 2DIAGNOSTIC, 17, -5.586993398216e-01, 5.279457684218e-05, 3.1353e+00, 9.6958e-02, - 2DIAGNOSTIC, 18, -5.587121567249e-01, 2.941775899788e-05, 3.2301e+00, 9.4837e-02, - 2DIAGNOSTIC, 19, -5.587101218089e-01, 1.807542567683e-05, 3.3115e+00, 8.1325e-02, - 2DIAGNOSTIC, 20, -5.587145024340e-01, 1.316460132474e-05, 3.4100e+00, 9.8541e-02, - 2DIAGNOSTIC, 21, -5.587184966016e-01, 9.613232230206e-06, 3.5058e+00, 9.5842e-02, - 2DIAGNOSTIC, 22, -5.587152806257e-01, 7.213128310493e-06, 3.6306e+00, 1.2471e-01, - 2DIAGNOSTIC, 23, -5.587143103270e-01, 5.622558310651e-06, 3.7302e+00, 9.9632e-02, - 2DIAGNOSTIC, 24, -5.587145328366e-01, 4.001211822549e-06, 3.8259e+00, 9.5730e-02, - 2DIAGNOSTIC, 25, -5.587132639186e-01, 2.630155264950e-06, 3.9107e+00, 8.4826e-02, - 2DIAGNOSTIC, 26, -5.587091193355e-01, 1.484978300555e-06, 3.9951e+00, 8.4403e-02, - 2DIAGNOSTIC, 27, -5.587067596707e-01, 1.007539701912e-06, 4.0890e+00, 9.3814e-02, - Elapsed time (stage 0): 4.2312e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.987090592326e-01, 1.797693134862e+308, 2.0583e-01, 2.0583e-01, - 2DIAGNOSTIC, 2, -9.009915896696e-01, 1.797693134862e+308, 2.0715e-01, 1.3199e-03, - 2DIAGNOSTIC, 3, -9.034634506575e-01, 1.797693134862e+308, 2.0847e-01, 1.3211e-03, - 2DIAGNOSTIC, 4, -9.095694475631e-01, 1.797693134862e+308, 2.0982e-01, 1.3490e-03, - 2DIAGNOSTIC, 5, -9.201756503458e-01, 1.797693134862e+308, 2.1116e-01, 1.3418e-03, - 2DIAGNOSTIC, 6, -9.373820246701e-01, 1.797693134862e+308, 2.1246e-01, 1.2941e-03, - 2DIAGNOSTIC, 7, -9.542534296477e-01, 1.797693134862e+308, 2.1381e-01, 1.3530e-03, - 2DIAGNOSTIC, 8, -9.761223266024e-01, 1.797693134862e+308, 2.1536e-01, 1.5559e-03, - 2DIAGNOSTIC, 9, -9.869377992548e-01, 1.797693134862e+308, 2.1738e-01, 2.0130e-03, - 2DIAGNOSTIC, 10, -9.950401130663e-01, 7.458811939313e-03, 2.1891e-01, 1.5290e-03, - 2DIAGNOSTIC, 11, -9.988592902315e-01, 7.150846028013e-03, 2.2041e-01, 1.5061e-03, - 2DIAGNOSTIC, 12, -1.017824372389e+00, 6.776183266247e-03, 2.2218e-01, 1.7710e-03, - 2DIAGNOSTIC, 13, -1.028450229373e+00, 6.135415638173e-03, 2.2516e-01, 2.9740e-03, - 2DIAGNOSTIC, 14, -1.028565945017e+00, 5.167181967966e-03, 2.2676e-01, 1.6069e-03, - 2DIAGNOSTIC, 15, -1.028688078464e+00, 4.083661758755e-03, 2.2852e-01, 1.7519e-03, - 2DIAGNOSTIC, 16, -1.030983733371e+00, 3.127178886083e-03, 2.3002e-01, 1.5030e-03, - 2DIAGNOSTIC, 17, -1.032406240090e+00, 2.303508103349e-03, 2.3177e-01, 1.7490e-03, - 2DIAGNOSTIC, 18, -1.033184931268e+00, 1.724049620787e-03, 2.3346e-01, 1.6949e-03, - 2DIAGNOSTIC, 19, -1.033830346606e+00, 1.226475058399e-03, 2.3494e-01, 1.4811e-03, - 2DIAGNOSTIC, 20, -1.034346699892e+00, 7.966809157401e-04, 2.3643e-01, 1.4851e-03, - 2DIAGNOSTIC, 21, -1.037226297491e+00, 4.217600701231e-04, 2.3807e-01, 1.6351e-03, - 2DIAGNOSTIC, 22, -1.038538992437e+00, 3.035056558077e-04, 2.3956e-01, 1.4920e-03, - 2DIAGNOSTIC, 23, -1.040912016196e+00, 3.303583737288e-04, 2.4149e-01, 1.9350e-03, - 2DIAGNOSTIC, 24, -1.041289780175e+00, 3.302995959650e-04, 2.4320e-01, 1.7121e-03, - 2DIAGNOSTIC, 25, -1.042755418187e+00, 3.173471440038e-04, 2.4534e-01, 2.1338e-03, - 2DIAGNOSTIC, 26, -1.044468051993e+00, 3.189223730419e-04, 2.4696e-01, 1.6201e-03, - 2DIAGNOSTIC, 27, -1.046687913789e+00, 3.281364744659e-04, 2.4865e-01, 1.6961e-03, - 2DIAGNOSTIC, 28, -1.047601999569e+00, 3.227483243456e-04, 2.5017e-01, 1.5171e-03, - 2DIAGNOSTIC, 29, -1.047256114209e+00, 2.908454891370e-04, 2.5170e-01, 1.5309e-03, - 2DIAGNOSTIC, 30, -1.044835701914e+00, 2.158097791869e-04, 2.5401e-01, 2.3122e-03, - 2DIAGNOSTIC, 31, -1.045061751311e+00, 1.541848400266e-04, 2.5550e-01, 1.4830e-03, - 2DIAGNOSTIC, 32, -1.045433248829e+00, 9.581800523321e-05, 2.5697e-01, 1.4708e-03, - 2DIAGNOSTIC, 33, -1.045763087618e+00, 5.497104798197e-05, 2.5844e-01, 1.4741e-03, - 2DIAGNOSTIC, 34, -1.046048006501e+00, 1.720409962053e-05, 2.6011e-01, 1.6651e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.996277288445e-01, 1.797693134862e+308, 4.7291e-01, 2.1281e-01, - 2DIAGNOSTIC, 2, -8.993741741865e-01, 1.797693134862e+308, 4.7560e-01, 2.6810e-03, - 2DIAGNOSTIC, 3, -9.008022914993e-01, 1.797693134862e+308, 4.7825e-01, 2.6591e-03, - 2DIAGNOSTIC, 4, -9.022800491088e-01, 1.797693134862e+308, 4.8053e-01, 2.2781e-03, - 2DIAGNOSTIC, 5, -9.038276575675e-01, 1.797693134862e+308, 4.8300e-01, 2.4700e-03, - 2DIAGNOSTIC, 6, -9.055117939290e-01, 1.797693134862e+308, 4.8640e-01, 3.3932e-03, - 2DIAGNOSTIC, 7, -9.056328489767e-01, 1.797693134862e+308, 4.8854e-01, 2.1429e-03, - 2DIAGNOSTIC, 8, -9.058894628853e-01, 1.797693134862e+308, 4.9129e-01, 2.7478e-03, - 2DIAGNOSTIC, 9, -9.059880439293e-01, 1.797693134862e+308, 4.9355e-01, 2.2659e-03, - 2DIAGNOSTIC, 10, -9.058666202706e-01, 5.515497012707e-04, 4.9582e-01, 2.2640e-03, - 2DIAGNOSTIC, 11, -9.057829794329e-01, 4.151469026322e-04, 4.9824e-01, 2.4259e-03, - 2DIAGNOSTIC, 12, -9.059410422847e-01, 2.619400714738e-04, 5.0084e-01, 2.6000e-03, - 2DIAGNOSTIC, 13, -9.062828901577e-01, 1.515292360702e-04, 5.0341e-01, 2.5721e-03, - 2DIAGNOSTIC, 14, -9.058058059806e-01, 6.510611901359e-05, 5.0597e-01, 2.5570e-03, - 2DIAGNOSTIC, 15, -9.055353545421e-01, 1.082440172971e-05, 5.0829e-01, 2.3232e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.503860886110e-01, 1.797693134862e+308, 7.4815e-01, 2.3985e-01, - 2DIAGNOSTIC, 2, -7.522609019560e-01, 1.797693134862e+308, 7.6290e-01, 1.4750e-02, - 2DIAGNOSTIC, 3, -7.548114749225e-01, 1.797693134862e+308, 7.7720e-01, 1.4306e-02, - 2DIAGNOSTIC, 4, -7.579373143802e-01, 1.797693134862e+308, 7.9186e-01, 1.4656e-02, - 2DIAGNOSTIC, 5, -7.611736237195e-01, 1.797693134862e+308, 8.0627e-01, 1.4414e-02, - 2DIAGNOSTIC, 6, -7.636099469261e-01, 1.797693134862e+308, 8.2276e-01, 1.6492e-02, - 2DIAGNOSTIC, 7, -7.655924585125e-01, 1.797693134862e+308, 8.4145e-01, 1.8687e-02, - 2DIAGNOSTIC, 8, -7.658553011532e-01, 1.797693134862e+308, 8.5590e-01, 1.4452e-02, - 2DIAGNOSTIC, 9, -7.663825571802e-01, 1.797693134862e+308, 8.7255e-01, 1.6644e-02, - 2DIAGNOSTIC, 10, -7.668058559930e-01, 1.516273125676e-03, 8.8746e-01, 1.4914e-02, - 2DIAGNOSTIC, 11, -7.670390107526e-01, 1.146930765854e-03, 9.0770e-01, 2.0237e-02, - 2DIAGNOSTIC, 12, -7.672535243401e-01, 8.014356632058e-04, 9.2918e-01, 2.1484e-02, - 2DIAGNOSTIC, 13, -7.672550888117e-01, 5.099900299390e-04, 9.4590e-01, 1.6715e-02, - 2DIAGNOSTIC, 14, -7.673011909186e-01, 2.978634395250e-04, 9.6290e-01, 1.6999e-02, - 2DIAGNOSTIC, 15, -7.672964537992e-01, 1.662647760301e-04, 9.7797e-01, 1.5076e-02, - 2DIAGNOSTIC, 16, -7.672794991632e-01, 9.130575996855e-05, 9.9258e-01, 1.4611e-02, - 2DIAGNOSTIC, 17, -7.673268320757e-01, 6.150609490406e-05, 1.0072e+00, 1.4629e-02, - 2DIAGNOSTIC, 18, -7.674043393590e-01, 3.638271706507e-05, 1.0235e+00, 1.6247e-02, - 2DIAGNOSTIC, 19, -7.673892406789e-01, 2.057535760225e-05, 1.0375e+00, 1.4045e-02, - 2DIAGNOSTIC, 20, -7.674246526962e-01, 1.309746027490e-05, 1.0521e+00, 1.4608e-02, - 2DIAGNOSTIC, 21, -7.674790416748e-01, 1.026517168792e-05, 1.0688e+00, 1.6646e-02, - 2DIAGNOSTIC, 22, -7.675647409421e-01, 1.191678967080e-05, 1.0835e+00, 1.4792e-02, - 2DIAGNOSTIC, 23, -7.676590255707e-01, 1.392510384050e-05, 1.1009e+00, 1.7371e-02, - 2DIAGNOSTIC, 24, -7.677166589840e-01, 1.619340786733e-05, 1.1181e+00, 1.7208e-02, - 2DIAGNOSTIC, 25, -7.677757144421e-01, 1.772819090969e-05, 1.1388e+00, 2.0719e-02, - 2DIAGNOSTIC, 26, -7.677767336526e-01, 1.734823033429e-05, 1.1555e+00, 1.6662e-02, - 2DIAGNOSTIC, 27, -7.677516648027e-01, 1.575436981158e-05, 1.1720e+00, 1.6476e-02, - 2DIAGNOSTIC, 28, -7.677309668367e-01, 1.367171555931e-05, 1.1913e+00, 1.9288e-02, - 2DIAGNOSTIC, 29, -7.677396998173e-01, 1.046566297185e-05, 1.2068e+00, 1.5564e-02, - 2DIAGNOSTIC, 30, -7.677147385670e-01, 6.704311298594e-06, 1.2223e+00, 1.5490e-02, - 2DIAGNOSTIC, 31, -7.676940473174e-01, 3.055755438824e-06, 1.2378e+00, 1.5513e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.465765004385e-01, 1.797693134862e+308, 1.6626e+00, 4.2473e-01, - 2DIAGNOSTIC, 2, -6.474718795260e-01, 1.797693134862e+308, 1.7498e+00, 8.7207e-02, - 2DIAGNOSTIC, 3, -6.482551320312e-01, 1.797693134862e+308, 1.8371e+00, 8.7319e-02, - 2DIAGNOSTIC, 4, -6.487957417994e-01, 1.797693134862e+308, 1.9218e+00, 8.4666e-02, - 2DIAGNOSTIC, 5, -6.490770949835e-01, 1.797693134862e+308, 2.0061e+00, 8.4334e-02, - 2DIAGNOSTIC, 6, -6.494170454714e-01, 1.797693134862e+308, 2.1032e+00, 9.7090e-02, - 2DIAGNOSTIC, 7, -6.497753807033e-01, 1.797693134862e+308, 2.2248e+00, 1.2163e-01, - 2DIAGNOSTIC, 8, -6.498987724017e-01, 1.797693134862e+308, 2.3904e+00, 1.6556e-01, - 2DIAGNOSTIC, 9, -6.499206545677e-01, 1.797693134862e+308, 2.4860e+00, 9.5621e-02, - 2DIAGNOSTIC, 10, -6.499587829593e-01, 3.180471031940e-04, 2.5947e+00, 1.0867e-01, - 2DIAGNOSTIC, 11, -6.499970522349e-01, 2.117409728700e-04, 2.6878e+00, 9.3172e-02, - 2DIAGNOSTIC, 12, -6.500197699154e-01, 1.372441346474e-04, 2.7962e+00, 1.0833e-01, - 2DIAGNOSTIC, 13, -6.500361193224e-01, 8.867603092404e-05, 2.8938e+00, 9.7597e-02, - 2DIAGNOSTIC, 14, -6.500522074354e-01, 5.667254214604e-05, 2.9788e+00, 8.5054e-02, - 2DIAGNOSTIC, 15, -6.500557717818e-01, 3.216789353229e-05, 3.0772e+00, 9.8430e-02, - 2DIAGNOSTIC, 16, -6.500596081164e-01, 1.713456813227e-05, 3.1756e+00, 9.8339e-02, - 2DIAGNOSTIC, 17, -6.500620782476e-01, 1.168813155735e-05, 3.2797e+00, 1.0414e-01, - 2DIAGNOSTIC, 18, -6.500563479471e-01, 8.803200571811e-06, 3.3712e+00, 9.1449e-02, - 2DIAGNOSTIC, 19, -6.500595027279e-01, 6.138982406034e-06, 3.4871e+00, 1.1594e-01, - 2DIAGNOSTIC, 20, -6.500583693691e-01, 4.118404324661e-06, 3.6517e+00, 1.6458e-01, - 2DIAGNOSTIC, 21, -6.500567059983e-01, 2.811534466608e-06, 3.7602e+00, 1.0856e-01, - 2DIAGNOSTIC, 22, -6.500550392942e-01, 1.918000202238e-06, 3.8675e+00, 1.0726e-01, - 2DIAGNOSTIC, 23, -6.500534543899e-01, 1.333882275752e-06, 3.9759e+00, 1.0844e-01, - 2DIAGNOSTIC, 24, -6.500498946264e-01, 1.030766746853e-06, 4.0745e+00, 9.8605e-02, - Elapsed time (stage 1): 4.2017e+00 - - -Total elapsed time: 8.4362e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:34:11 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:34:12 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55f7e0e0f4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 61.5673, -112.413] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f7e0e14fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc447b59010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55f7e0e10850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 61.5673, -112.413] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f7e0e0df30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc44449a010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55f7e0e27b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 61.5673, -112.413] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f7e0e14550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc440ddb010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55f7e0e2cd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 61.5673, -112.413] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f7e0e2ac00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc43d71c010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55f7e0e2ef70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 61.5673, -112.413] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f7e0e2d3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc43a05d010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55f7e0e2f540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 61.5673, -112.413] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f7e0e2f4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc43699e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.100996339835e-01, 1.797693134862e+308, 2.1577e-01, 2.1577e-01, - 2DIAGNOSTIC, 2, -7.128051932528e-01, 1.797693134862e+308, 2.1803e-01, 2.2631e-03, - 2DIAGNOSTIC, 3, -7.165415571405e-01, 1.797693134862e+308, 2.2040e-01, 2.3630e-03, - 2DIAGNOSTIC, 4, -7.211530706053e-01, 1.797693134862e+308, 2.2276e-01, 2.3642e-03, - 2DIAGNOSTIC, 5, -7.260672954093e-01, 1.797693134862e+308, 2.2502e-01, 2.2609e-03, - 2DIAGNOSTIC, 6, -7.289077536764e-01, 1.797693134862e+308, 2.2706e-01, 2.0380e-03, - 2DIAGNOSTIC, 7, -7.301979928795e-01, 1.797693134862e+308, 2.2934e-01, 2.2821e-03, - 2DIAGNOSTIC, 8, -7.310048052589e-01, 1.797693134862e+308, 2.3272e-01, 3.3810e-03, - 2DIAGNOSTIC, 9, -7.312015507256e-01, 1.797693134862e+308, 2.3467e-01, 1.9460e-03, - 2DIAGNOSTIC, 10, -7.317867529902e-01, 2.068295042305e-03, 2.3716e-01, 2.4891e-03, - 2DIAGNOSTIC, 11, -7.316396476862e-01, 1.490595826974e-03, 2.3932e-01, 2.1648e-03, - 2DIAGNOSTIC, 12, -7.315810297346e-01, 9.634372329823e-04, 2.4176e-01, 2.4381e-03, - 2DIAGNOSTIC, 13, -7.316149972461e-01, 5.438225851791e-04, 2.4421e-01, 2.4459e-03, - 2DIAGNOSTIC, 14, -7.316450054527e-01, 2.624730327731e-04, 2.4638e-01, 2.1739e-03, - 2DIAGNOSTIC, 15, -7.315367475184e-01, 1.188233327399e-04, 2.4894e-01, 2.5630e-03, - 2DIAGNOSTIC, 16, -7.313232080952e-01, 4.627298166252e-05, 2.5178e-01, 2.8362e-03, - 2DIAGNOSTIC, 17, -7.313373335945e-01, 8.121597035657e-06, 2.5443e-01, 2.6541e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.244719688550e-01, 1.797693134862e+308, 4.8135e-01, 2.2691e-01, - 2DIAGNOSTIC, 2, -6.253774654944e-01, 1.797693134862e+308, 4.9527e-01, 1.3923e-02, - 2DIAGNOSTIC, 3, -6.260461672146e-01, 1.797693134862e+308, 5.1258e-01, 1.7316e-02, - 2DIAGNOSTIC, 4, -6.263619553033e-01, 1.797693134862e+308, 5.2629e-01, 1.3706e-02, - 2DIAGNOSTIC, 5, -6.265888378752e-01, 1.797693134862e+308, 5.4553e-01, 1.9243e-02, - 2DIAGNOSTIC, 6, -6.266239571353e-01, 1.797693134862e+308, 5.6083e-01, 1.5293e-02, - 2DIAGNOSTIC, 7, -6.266250063407e-01, 1.797693134862e+308, 5.7649e-01, 1.5660e-02, - 2DIAGNOSTIC, 8, -6.266097533883e-01, 1.797693134862e+308, 5.9300e-01, 1.6514e-02, - 2DIAGNOSTIC, 9, -6.265881376926e-01, 1.797693134862e+308, 6.0825e-01, 1.5248e-02, - 2DIAGNOSTIC, 10, -6.265780478522e-01, 1.705711678770e-04, 6.2197e-01, 1.3725e-02, - 2DIAGNOSTIC, 11, -6.265705112313e-01, 7.825029167048e-05, 6.3542e-01, 1.3443e-02, - 2DIAGNOSTIC, 12, -6.265812755784e-01, 2.876503390582e-05, 6.4908e-01, 1.3660e-02, - 2DIAGNOSTIC, 13, -6.265675740574e-01, 7.195349811320e-06, 6.6504e-01, 1.5959e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.265112764116e-01, 1.797693134862e+308, 1.0308e+00, 3.6572e-01, - 2DIAGNOSTIC, 2, -5.269954933944e-01, 1.797693134862e+308, 1.1246e+00, 9.3794e-02, - 2DIAGNOSTIC, 3, -5.272292661923e-01, 1.797693134862e+308, 1.2169e+00, 9.2299e-02, - 2DIAGNOSTIC, 4, -5.272995068374e-01, 1.797693134862e+308, 1.3227e+00, 1.0585e-01, - 2DIAGNOSTIC, 5, -5.273220192617e-01, 1.797693134862e+308, 1.4166e+00, 9.3890e-02, - 2DIAGNOSTIC, 6, -5.273464866063e-01, 1.797693134862e+308, 1.5218e+00, 1.0517e-01, - 2DIAGNOSTIC, 7, -5.274629739929e-01, 1.797693134862e+308, 1.6903e+00, 1.6858e-01, - 2DIAGNOSTIC, 8, -5.274682934079e-01, 1.797693134862e+308, 1.7975e+00, 1.0718e-01, - 2DIAGNOSTIC, 9, -5.274729459692e-01, 1.797693134862e+308, 1.9024e+00, 1.0492e-01, - 2DIAGNOSTIC, 10, -5.274730316822e-01, 9.088361439220e-05, 2.0100e+00, 1.0754e-01, - 2DIAGNOSTIC, 11, -5.274729245889e-01, 4.697863987115e-05, 2.1171e+00, 1.0709e-01, - 2DIAGNOSTIC, 12, -5.274734126613e-01, 2.787583197540e-05, 2.2249e+00, 1.0780e-01, - 2DIAGNOSTIC, 13, -5.274680809717e-01, 1.882775071523e-05, 2.3334e+00, 1.0857e-01, - 2DIAGNOSTIC, 14, -5.274684136814e-01, 1.236368433248e-05, 2.4432e+00, 1.0976e-01, - 2DIAGNOSTIC, 15, -5.274693651906e-01, 6.708919045917e-06, 2.5381e+00, 9.4866e-02, - 2DIAGNOSTIC, 16, -5.274701664414e-01, 2.080102901467e-06, 2.6576e+00, 1.1954e-01, - 2DIAGNOSTIC, 17, -5.274715490147e-01, 1.721535262837e-06, 2.7602e+00, 1.0260e-01, - 2DIAGNOSTIC, 18, -5.274707098340e-01, 1.548978188264e-06, 2.8553e+00, 9.5057e-02, - 2DIAGNOSTIC, 19, -5.274697022667e-01, 1.520190767254e-06, 2.9467e+00, 9.1440e-02, - 2DIAGNOSTIC, 20, -5.274689898906e-01, 1.490203717189e-06, 3.0408e+00, 9.4071e-02, - 2DIAGNOSTIC, 21, -5.274687528947e-01, 1.461033840376e-06, 3.1462e+00, 1.0543e-01, - 2DIAGNOSTIC, 22, -5.274697840325e-01, 1.479983330437e-06, 3.2526e+00, 1.0643e-01, - 2DIAGNOSTIC, 23, -5.274664436217e-01, 1.290549238774e-06, 3.3390e+00, 8.6356e-02, - 2DIAGNOSTIC, 24, -5.274637296723e-01, 1.075089568030e-06, 3.4525e+00, 1.1355e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.576019245104e-01, 1.797693134862e+308, 4.6079e+00, 1.1553e+00, - 2DIAGNOSTIC, 2, -4.577870446321e-01, 1.797693134862e+308, 5.4194e+00, 8.1155e-01, - 2DIAGNOSTIC, 3, -4.578031197994e-01, 1.797693134862e+308, 6.2431e+00, 8.2368e-01, - 2DIAGNOSTIC, 4, -4.578014993162e-01, 1.797693134862e+308, 6.8562e+00, 6.1309e-01, - 2DIAGNOSTIC, 5, -4.578013625213e-01, 1.797693134862e+308, 7.5405e+00, 6.8431e-01, - 2DIAGNOSTIC, 6, -4.578009571928e-01, 1.797693134862e+308, 8.1548e+00, 6.1430e-01, - 2DIAGNOSTIC, 7, -4.578002898897e-01, 1.797693134862e+308, 8.9422e+00, 7.8740e-01, - 2DIAGNOSTIC, 8, -4.577997814967e-01, 1.797693134862e+308, 9.7197e+00, 7.7751e-01, - 2DIAGNOSTIC, 9, -4.577996540421e-01, 1.797693134862e+308, 1.0322e+01, 6.0256e-01, - 2DIAGNOSTIC, 10, -4.577996714637e-01, 1.595723913743e-05, 1.0827e+01, 5.0445e-01, - 2DIAGNOSTIC, 11, -4.577995464964e-01, 3.306520362359e-06, 1.1340e+01, 5.1371e-01, - 2DIAGNOSTIC, 12, -4.577995681414e-01, 2.281665256024e-06, 1.1868e+01, 5.2773e-01, - 2DIAGNOSTIC, 13, -4.577994503167e-01, 2.212188883646e-06, 1.2487e+01, 6.1869e-01, - 2DIAGNOSTIC, 14, -4.577994825481e-01, 2.103255825142e-06, 1.3107e+01, 6.1978e-01, - 2DIAGNOSTIC, 15, -4.577993603385e-01, 2.013302010412e-06, 1.3646e+01, 5.3920e-01, - 2DIAGNOSTIC, 16, -4.577992603037e-01, 1.925410665918e-06, 1.4159e+01, 5.1332e-01, - 2DIAGNOSTIC, 17, -4.577993519173e-01, 1.833190326518e-06, 1.4698e+01, 5.3868e-01, - 2DIAGNOSTIC, 18, -4.577991973083e-01, 1.731786860096e-06, 1.5281e+01, 5.8293e-01, - 2DIAGNOSTIC, 19, -4.577986449719e-01, 1.622218275037e-06, 1.5857e+01, 5.7598e-01, - 2DIAGNOSTIC, 20, -4.577986322818e-01, 1.529198529707e-06, 1.6465e+01, 6.0808e-01, - 2DIAGNOSTIC, 21, -4.577986025246e-01, 1.445925224636e-06, 1.7059e+01, 5.9417e-01, - 2DIAGNOSTIC, 22, -4.577983742896e-01, 1.370621587858e-06, 1.7559e+01, 5.0053e-01, - 2DIAGNOSTIC, 23, -4.577983559076e-01, 1.305405256558e-06, 1.8091e+01, 5.3170e-01, - 2DIAGNOSTIC, 24, -4.577985499676e-01, 1.259042137249e-06, 1.8563e+01, 4.7205e-01, - 2DIAGNOSTIC, 25, -4.577986254119e-01, 1.221321255025e-06, 1.9133e+01, 5.6956e-01, - 2DIAGNOSTIC, 26, -4.577988256705e-01, 1.193409101152e-06, 1.9649e+01, 5.1650e-01, - 2DIAGNOSTIC, 27, -4.577985457834e-01, 1.166066648843e-06, 2.0321e+01, 6.7149e-01, - 2DIAGNOSTIC, 28, -4.577985445644e-01, 1.138968093527e-06, 2.0893e+01, 5.7214e-01, - 2DIAGNOSTIC, 29, -4.577984887835e-01, 1.100291906413e-06, 2.1416e+01, 5.2282e-01, - 2DIAGNOSTIC, 30, -4.577985003499e-01, 1.063686792611e-06, 2.1984e+01, 5.6859e-01, - 2DIAGNOSTIC, 31, -4.577983883262e-01, 1.026405059522e-06, 2.2632e+01, 6.4714e-01, - Elapsed time (stage 0): 2.2984e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.153031967069e-01, 1.797693134862e+308, 1.8251e-01, 1.8251e-01, - 2DIAGNOSTIC, 2, -7.174619275452e-01, 1.797693134862e+308, 1.8448e-01, 1.9698e-03, - 2DIAGNOSTIC, 3, -7.205374179508e-01, 1.797693134862e+308, 1.8639e-01, 1.9040e-03, - 2DIAGNOSTIC, 4, -7.253230299502e-01, 1.797693134862e+308, 1.8829e-01, 1.9050e-03, - 2DIAGNOSTIC, 5, -7.297083576407e-01, 1.797693134862e+308, 1.9027e-01, 1.9810e-03, - 2DIAGNOSTIC, 6, -7.326193881900e-01, 1.797693134862e+308, 1.9218e-01, 1.9121e-03, - 2DIAGNOSTIC, 7, -7.334605657542e-01, 1.797693134862e+308, 1.9542e-01, 3.2320e-03, - 2DIAGNOSTIC, 8, -7.336593043872e-01, 1.797693134862e+308, 1.9732e-01, 1.9050e-03, - 2DIAGNOSTIC, 9, -7.338579618957e-01, 1.797693134862e+308, 1.9929e-01, 1.9681e-03, - 2DIAGNOSTIC, 10, -7.341197602607e-01, 1.824734777639e-03, 2.0175e-01, 2.4600e-03, - 2DIAGNOSTIC, 11, -7.342701400438e-01, 1.303253294522e-03, 2.0384e-01, 2.0921e-03, - 2DIAGNOSTIC, 12, -7.342921031127e-01, 8.242686351559e-04, 2.0596e-01, 2.1181e-03, - 2DIAGNOSTIC, 13, -7.345997901629e-01, 4.456186914000e-04, 2.0804e-01, 2.0840e-03, - 2DIAGNOSTIC, 14, -7.350881223426e-01, 2.254957147104e-04, 2.1046e-01, 2.4109e-03, - 2DIAGNOSTIC, 15, -7.361688175786e-01, 1.541996898652e-04, 2.1314e-01, 2.6820e-03, - 2DIAGNOSTIC, 16, -7.364332127103e-01, 1.541451274821e-04, 2.1539e-01, 2.2509e-03, - 2DIAGNOSTIC, 17, -7.366689684565e-01, 1.650121980181e-04, 2.1793e-01, 2.5449e-03, - 2DIAGNOSTIC, 18, -7.376948642509e-01, 1.861795398450e-04, 2.2514e-01, 7.2069e-03, - 2DIAGNOSTIC, 19, -7.376948508541e-01, 1.912440608070e-04, 2.2729e-01, 2.1460e-03, - 2DIAGNOSTIC, 20, -7.376949023827e-01, 1.832000740165e-04, 2.2935e-01, 2.0671e-03, - 2DIAGNOSTIC, 21, -7.376949894977e-01, 1.621381707477e-04, 2.3148e-01, 2.1291e-03, - 2DIAGNOSTIC, 22, -7.376951367534e-01, 1.285071843425e-04, 2.3357e-01, 2.0921e-03, - 2DIAGNOSTIC, 23, -7.376953856050e-01, 9.088113057257e-05, 2.3574e-01, 2.1610e-03, - 2DIAGNOSTIC, 24, -7.376958059658e-01, 5.547385125380e-05, 2.3784e-01, 2.1069e-03, - 2DIAGNOSTIC, 25, -7.376965155236e-01, 3.479253064407e-05, 2.4002e-01, 2.1751e-03, - 2DIAGNOSTIC, 26, -7.376977117677e-01, 1.660389695070e-05, 2.4213e-01, 2.1112e-03, - 2DIAGNOSTIC, 27, -7.376997242696e-01, 1.313071473129e-06, 2.4428e-01, 2.1551e-03, - 2DIAGNOSTIC, 28, -7.377031003286e-01, 1.351318394571e-06, 2.4649e-01, 2.2061e-03, - 2DIAGNOSTIC, 29, -7.377087772651e-01, 1.442031091703e-06, 2.4873e-01, 2.2411e-03, - 2DIAGNOSTIC, 30, -7.377181193573e-01, 1.614542520005e-06, 2.5106e-01, 2.3282e-03, - 2DIAGNOSTIC, 31, -7.377333002196e-01, 1.912563087743e-06, 2.5333e-01, 2.2669e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.313546519525e-01, 1.797693134862e+308, 4.6991e-01, 2.1658e-01, - 2DIAGNOSTIC, 2, -6.319779765698e-01, 1.797693134862e+308, 4.8428e-01, 1.4370e-02, - 2DIAGNOSTIC, 3, -6.325430512533e-01, 1.797693134862e+308, 4.9951e-01, 1.5228e-02, - 2DIAGNOSTIC, 4, -6.330661064620e-01, 1.797693134862e+308, 5.1643e-01, 1.6918e-02, - 2DIAGNOSTIC, 5, -6.331739631539e-01, 1.797693134862e+308, 5.3177e-01, 1.5345e-02, - 2DIAGNOSTIC, 6, -6.333057297738e-01, 1.797693134862e+308, 5.4878e-01, 1.7011e-02, - 2DIAGNOSTIC, 7, -6.333788780728e-01, 1.797693134862e+308, 5.6572e-01, 1.6940e-02, - 2DIAGNOSTIC, 8, -6.333849742647e-01, 1.797693134862e+308, 5.8454e-01, 1.8821e-02, - 2DIAGNOSTIC, 9, -6.333930196140e-01, 1.797693134862e+308, 6.0108e-01, 1.6534e-02, - 2DIAGNOSTIC, 10, -6.333910298953e-01, 1.842208450284e-04, 6.1762e-01, 1.6544e-02, - 2DIAGNOSTIC, 11, -6.333708355068e-01, 1.038742056662e-04, 6.3253e-01, 1.4907e-02, - 2DIAGNOSTIC, 12, -6.333889252863e-01, 5.152851722139e-05, 6.4859e-01, 1.6059e-02, - 2DIAGNOSTIC, 13, -6.334948838047e-01, 2.556266272069e-05, 6.6455e-01, 1.5966e-02, - 2DIAGNOSTIC, 14, -6.334948801456e-01, 1.786720697503e-05, 6.8870e-01, 2.4146e-02, - 2DIAGNOSTIC, 15, -6.335024135432e-01, 1.319407823475e-05, 7.0459e-01, 1.5896e-02, - 2DIAGNOSTIC, 16, -6.334780769567e-01, 1.110154128364e-05, 7.2233e-01, 1.7740e-02, - 2DIAGNOSTIC, 17, -6.334650274781e-01, 1.000471669202e-05, 7.3663e-01, 1.4295e-02, - 2DIAGNOSTIC, 18, -6.334384374945e-01, 7.711760634792e-06, 7.5089e-01, 1.4263e-02, - 2DIAGNOSTIC, 19, -6.334428042972e-01, 5.400100671217e-06, 7.6849e-01, 1.7594e-02, - 2DIAGNOSTIC, 20, -6.334299442387e-01, 2.681421326194e-06, 7.8430e-01, 1.5817e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.265608621222e-01, 1.797693134862e+308, 1.1606e+00, 3.7632e-01, - 2DIAGNOSTIC, 2, -5.272541645831e-01, 1.797693134862e+308, 1.2640e+00, 1.0335e-01, - 2DIAGNOSTIC, 3, -5.279885758819e-01, 1.797693134862e+308, 1.3665e+00, 1.0252e-01, - 2DIAGNOSTIC, 4, -5.286171344056e-01, 1.797693134862e+308, 1.4724e+00, 1.0586e-01, - 2DIAGNOSTIC, 5, -5.288780992625e-01, 1.797693134862e+308, 1.5689e+00, 9.6498e-02, - 2DIAGNOSTIC, 6, -5.290552479165e-01, 1.797693134862e+308, 1.7075e+00, 1.3869e-01, - 2DIAGNOSTIC, 7, -5.290550900492e-01, 1.797693134862e+308, 1.8088e+00, 1.0121e-01, - 2DIAGNOSTIC, 8, -5.290794612699e-01, 1.797693134862e+308, 1.9013e+00, 9.2512e-02, - 2DIAGNOSTIC, 9, -5.291426164646e-01, 1.797693134862e+308, 2.0057e+00, 1.0445e-01, - 2DIAGNOSTIC, 10, -5.292022200946e-01, 2.877116801590e-04, 2.1234e+00, 1.1770e-01, - 2DIAGNOSTIC, 11, -5.293622869466e-01, 1.803971688080e-04, 2.2810e+00, 1.5755e-01, - 2DIAGNOSTIC, 12, -5.293681745220e-01, 1.058313470991e-04, 2.3791e+00, 9.8133e-02, - 2DIAGNOSTIC, 13, -5.293793476653e-01, 6.385865367153e-05, 2.4730e+00, 9.3911e-02, - 2DIAGNOSTIC, 14, -5.293934415688e-01, 4.681872474492e-05, 2.5649e+00, 9.1920e-02, - 2DIAGNOSTIC, 15, -5.294109118737e-01, 3.772375989845e-05, 2.6590e+00, 9.4083e-02, - 2DIAGNOSTIC, 16, -5.294219890741e-01, 3.276570040879e-05, 2.7644e+00, 1.0540e-01, - 2DIAGNOSTIC, 17, -5.294237116230e-01, 2.562109379767e-05, 2.8682e+00, 1.0379e-01, - 2DIAGNOSTIC, 18, -5.294494898423e-01, 1.862294739062e-05, 3.0950e+00, 2.2682e-01, - 2DIAGNOSTIC, 19, -5.294476595870e-01, 1.251883735888e-05, 3.2124e+00, 1.1733e-01, - 2DIAGNOSTIC, 20, -5.294447330384e-01, 7.424370951643e-06, 3.3278e+00, 1.1540e-01, - 2DIAGNOSTIC, 21, -5.294429055854e-01, 6.331526328049e-06, 3.4452e+00, 1.1741e-01, - 2DIAGNOSTIC, 22, -5.294424353251e-01, 5.019693504728e-06, 3.5619e+00, 1.1671e-01, - 2DIAGNOSTIC, 23, -5.294416306218e-01, 3.718215791072e-06, 3.6661e+00, 1.0424e-01, - 2DIAGNOSTIC, 24, -5.294411455130e-01, 2.602013780301e-06, 3.7790e+00, 1.1286e-01, - 2DIAGNOSTIC, 25, -5.294387802330e-01, 1.783922947474e-06, 3.8768e+00, 9.7805e-02, - 2DIAGNOSTIC, 26, -5.294366923660e-01, 1.173213505755e-06, 3.9886e+00, 1.1177e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.577726389021e-01, 1.797693134862e+308, 5.2461e+00, 1.2575e+00, - 2DIAGNOSTIC, 2, -4.580053530834e-01, 1.797693134862e+308, 5.8291e+00, 5.8304e-01, - 2DIAGNOSTIC, 3, -4.581464728856e-01, 1.797693134862e+308, 6.4252e+00, 5.9610e-01, - 2DIAGNOSTIC, 4, -4.583198853682e-01, 1.797693134862e+308, 7.0201e+00, 5.9490e-01, - 2DIAGNOSTIC, 5, -4.584930457318e-01, 1.797693134862e+308, 7.7707e+00, 7.5062e-01, - 2DIAGNOSTIC, 6, -4.585847381647e-01, 1.797693134862e+308, 9.3779e+00, 1.6072e+00, - 2DIAGNOSTIC, 7, -4.585847682347e-01, 1.797693134862e+308, 1.0187e+01, 8.0924e-01, - 2DIAGNOSTIC, 8, -4.585846970037e-01, 1.797693134862e+308, 1.0844e+01, 6.5671e-01, - 2DIAGNOSTIC, 9, -4.585846415950e-01, 1.797693134862e+308, 1.1476e+01, 6.3162e-01, - 2DIAGNOSTIC, 10, -4.585846283043e-01, 1.125927684876e-04, 1.1993e+01, 5.1705e-01, - 2DIAGNOSTIC, 11, -4.585843330726e-01, 6.999243142901e-05, 1.2663e+01, 6.7047e-01, - 2DIAGNOSTIC, 12, -4.585842549245e-01, 4.052576362644e-05, 1.3297e+01, 6.3424e-01, - 2DIAGNOSTIC, 13, -4.585841565191e-01, 1.883367759919e-05, 1.3936e+01, 6.3882e-01, - 2DIAGNOSTIC, 14, -4.585839421940e-01, 6.252030802359e-06, 1.4564e+01, 6.2752e-01, - 2DIAGNOSTIC, 15, -4.585839472371e-01, 2.033660186029e-06, 1.5175e+01, 6.1117e-01, - 2DIAGNOSTIC, 16, -4.585839819487e-01, 1.904806410380e-06, 1.5959e+01, 7.8425e-01, - 2DIAGNOSTIC, 17, -4.585837757420e-01, 1.792400560516e-06, 1.6617e+01, 6.5750e-01, - 2DIAGNOSTIC, 18, -4.585838508340e-01, 1.700144307427e-06, 1.7271e+01, 6.5424e-01, - 2DIAGNOSTIC, 19, -4.585836311348e-01, 1.614736151963e-06, 1.7871e+01, 6.0051e-01, - 2DIAGNOSTIC, 20, -4.585837363836e-01, 1.546606329110e-06, 1.8466e+01, 5.9490e-01, - 2DIAGNOSTIC, 21, -4.585837599298e-01, 1.480872599741e-06, 1.9141e+01, 6.7487e-01, - 2DIAGNOSTIC, 22, -4.585838745868e-01, 1.425351482946e-06, 1.9735e+01, 5.9400e-01, - 2DIAGNOSTIC, 23, -4.585836054395e-01, 1.366862938841e-06, 2.0407e+01, 6.7243e-01, - 2DIAGNOSTIC, 24, -4.585832639704e-01, 1.300680476955e-06, 2.1021e+01, 6.1361e-01, - 2DIAGNOSTIC, 25, -4.585835370032e-01, 1.249161584491e-06, 2.1807e+01, 7.8611e-01, - 2DIAGNOSTIC, 26, -4.585832952439e-01, 1.198537582202e-06, 2.2472e+01, 6.6522e-01, - 2DIAGNOSTIC, 27, -4.585832076447e-01, 1.147299806686e-06, 2.3064e+01, 5.9203e-01, - 2DIAGNOSTIC, 28, -4.585831120390e-01, 1.102582295714e-06, 2.3584e+01, 5.1940e-01, - 2DIAGNOSTIC, 29, -4.585830568572e-01, 1.058310373087e-06, 2.4224e+01, 6.4027e-01, - 2DIAGNOSTIC, 30, -4.585831296205e-01, 1.024186887771e-06, 2.4818e+01, 5.9408e-01, - Elapsed time (stage 1): 2.5199e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.164780596999e-01, 1.797693134862e+308, 2.5158e-01, 2.5158e-01, - 1DIAGNOSTIC, 2, -9.264287477374e-01, 1.797693134862e+308, 3.4733e-01, 9.5752e-02, - 1DIAGNOSTIC, 3, -9.345124061516e-01, 1.797693134862e+308, 4.4414e-01, 9.6803e-02, - 1DIAGNOSTIC, 4, -9.402003551868e-01, 1.797693134862e+308, 5.3759e-01, 9.3453e-02, - 1DIAGNOSTIC, 5, -9.445280714009e-01, 1.797693134862e+308, 6.3378e-01, 9.6191e-02, - 1DIAGNOSTIC, 6, -9.479749110672e-01, 1.797693134862e+308, 7.2768e-01, 9.3894e-02, - 1DIAGNOSTIC, 7, -9.504457469501e-01, 1.797693134862e+308, 8.2632e-01, 9.8643e-02, - 1DIAGNOSTIC, 8, -9.526157292725e-01, 1.797693134862e+308, 9.2156e-01, 9.5239e-02, - 1DIAGNOSTIC, 9, -9.544810270352e-01, 1.797693134862e+308, 1.0245e+00, 1.0291e-01, - 1DIAGNOSTIC, 10, -9.560139940441e-01, 2.479418562840e-03, 1.1244e+00, 9.9892e-02, - 1DIAGNOSTIC, 11, -9.572066876319e-01, 1.748876522886e-03, 1.2227e+00, 9.8329e-02, - 1DIAGNOSTIC, 12, -9.582317804241e-01, 1.256809038456e-03, 1.3225e+00, 9.9789e-02, - 1DIAGNOSTIC, 13, -9.590185330751e-01, 9.310060761990e-04, 1.4194e+00, 9.6944e-02, - 1DIAGNOSTIC, 14, -9.596155143513e-01, 7.011120546255e-04, 1.5167e+00, 9.7305e-02, - 1DIAGNOSTIC, 15, -9.601158404009e-01, 5.337685292887e-04, 1.6151e+00, 9.8415e-02, - 1DIAGNOSTIC, 16, -9.604948880615e-01, 4.097975939536e-04, 1.7171e+00, 1.0196e-01, - 1DIAGNOSTIC, 17, -9.608486922929e-01, 3.121961114300e-04, 1.8162e+00, 9.9147e-02, - 1DIAGNOSTIC, 18, -9.608281095213e-01, 2.321031010037e-04, 1.9156e+00, 9.9309e-02, - 1DIAGNOSTIC, 19, -9.608933603421e-01, 1.693173847181e-04, 2.0135e+00, 9.7973e-02, - 1DIAGNOSTIC, 20, -9.607712176203e-01, 1.181262321253e-04, 2.1110e+00, 9.7474e-02, - 1DIAGNOSTIC, 21, -9.610681130600e-01, 8.196802513057e-05, 2.2096e+00, 9.8558e-02, - 1DIAGNOSTIC, 22, -9.608701943272e-01, 5.252891099657e-05, 2.3091e+00, 9.9534e-02, - 1DIAGNOSTIC, 23, -9.611246608037e-01, 3.441996859476e-05, 2.4048e+00, 9.5751e-02, - 1DIAGNOSTIC, 24, -9.609343412488e-01, 1.967697454845e-05, 2.4986e+00, 9.3719e-02, - 1DIAGNOSTIC, 25, -9.611285870817e-01, 1.267490707876e-05, 2.5959e+00, 9.7358e-02, - 1DIAGNOSTIC, 26, -9.609608716298e-01, 7.374950745875e-06, 2.6932e+00, 9.7245e-02, - 1DIAGNOSTIC, 27, -9.611568912106e-01, 8.012633966013e-06, 2.7926e+00, 9.9463e-02, - 1DIAGNOSTIC, 28, -9.609777230642e-01, 5.773868774046e-06, 2.8908e+00, 9.8144e-02, - 1DIAGNOSTIC, 29, -9.611515392629e-01, 5.812883700718e-06, 2.9912e+00, 1.0037e-01, - 1DIAGNOSTIC, 30, -9.609842550233e-01, 2.406187820395e-06, 3.0938e+00, 1.0263e-01, - 1DIAGNOSTIC, 31, -9.611559099843e-01, 3.699147840007e-06, 3.1872e+00, 9.3407e-02, - 1DIAGNOSTIC, 32, -9.609901803413e-01, 1.159262208582e-06, 3.2849e+00, 9.7729e-02, - 1DIAGNOSTIC, 33, -9.611458523512e-01, 2.555028429718e-06, 3.3854e+00, 1.0048e-01, - 1DIAGNOSTIC, 34, -9.609838661948e-01, 5.500256420668e-07, 3.4813e+00, 9.5951e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.078338661652e-01, 1.797693134862e+308, 4.3230e+00, 8.4169e-01, - 1DIAGNOSTIC, 2, -9.117018657593e-01, 1.797693134862e+308, 4.9882e+00, 6.6518e-01, - 1DIAGNOSTIC, 3, -9.150724681415e-01, 1.797693134862e+308, 5.6521e+00, 6.6392e-01, - 1DIAGNOSTIC, 4, -9.180232209771e-01, 1.797693134862e+308, 6.3146e+00, 6.6250e-01, - 1DIAGNOSTIC, 5, -9.207815369894e-01, 1.797693134862e+308, 6.9790e+00, 6.6432e-01, - 1DIAGNOSTIC, 6, -9.233801256445e-01, 1.797693134862e+308, 7.6489e+00, 6.6992e-01, - 1DIAGNOSTIC, 7, -9.257418504807e-01, 1.797693134862e+308, 8.3077e+00, 6.5883e-01, - 1DIAGNOSTIC, 8, -9.280050820369e-01, 1.797693134862e+308, 8.9694e+00, 6.6174e-01, - 1DIAGNOSTIC, 9, -9.301157270632e-01, 1.797693134862e+308, 9.6247e+00, 6.5527e-01, - 1DIAGNOSTIC, 10, -9.320727564798e-01, 1.651735082349e-03, 1.0286e+01, 6.6156e-01, - 1DIAGNOSTIC, 11, -9.338181831588e-01, 1.381592326641e-03, 1.0971e+01, 6.8435e-01, - 1DIAGNOSTIC, 12, -9.353331640197e-01, 1.169707421176e-03, 1.1632e+01, 6.6122e-01, - 1DIAGNOSTIC, 13, -9.365478194503e-01, 9.925922115078e-04, 1.2279e+01, 6.4683e-01, - 1DIAGNOSTIC, 14, -9.374196890761e-01, 8.339730550884e-04, 1.2943e+01, 6.6418e-01, - 1DIAGNOSTIC, 15, -9.381973021950e-01, 6.923268848967e-04, 1.3608e+01, 6.6525e-01, - 1DIAGNOSTIC, 16, -9.388861594899e-01, 5.675508516876e-04, 1.4273e+01, 6.6441e-01, - 1DIAGNOSTIC, 17, -9.394967201623e-01, 4.584208835409e-04, 1.4932e+01, 6.5936e-01, - 1DIAGNOSTIC, 18, -9.400284685888e-01, 3.663511520786e-04, 1.5603e+01, 6.7157e-01, - 1DIAGNOSTIC, 19, -9.405033836759e-01, 2.914763873179e-04, 1.6251e+01, 6.4731e-01, - 1DIAGNOSTIC, 20, -9.409294164854e-01, 2.332546804857e-04, 1.6896e+01, 6.4547e-01, - 1DIAGNOSTIC, 21, -9.413042517049e-01, 1.894930890958e-04, 1.7559e+01, 6.6290e-01, - 1DIAGNOSTIC, 22, -9.416397009729e-01, 1.575571880259e-04, 1.8234e+01, 6.7456e-01, - 1DIAGNOSTIC, 23, -9.419423058020e-01, 1.337564745432e-04, 1.8891e+01, 6.5721e-01, - 1DIAGNOSTIC, 24, -9.422155633284e-01, 1.139331082037e-04, 1.9542e+01, 6.5132e-01, - 1DIAGNOSTIC, 25, -9.424586746455e-01, 9.743636528866e-05, 2.0206e+01, 6.6375e-01, - 1DIAGNOSTIC, 26, -9.426794196805e-01, 8.371210892146e-05, 2.0847e+01, 6.4112e-01, - 1DIAGNOSTIC, 27, -9.428794963929e-01, 7.228596390105e-05, 2.1504e+01, 6.5730e-01, - 1DIAGNOSTIC, 28, -9.430578676589e-01, 6.260740093681e-05, 2.2159e+01, 6.5484e-01, - 1DIAGNOSTIC, 29, -9.432272916459e-01, 5.448024969186e-05, 2.2820e+01, 6.6101e-01, - 1DIAGNOSTIC, 30, -9.433728508048e-01, 4.758046541565e-05, 2.3483e+01, 6.6245e-01, - 1DIAGNOSTIC, 31, -9.435039544003e-01, 4.163358189986e-05, 2.4151e+01, 6.6836e-01, - 1DIAGNOSTIC, 32, -9.436149309599e-01, 3.640607761090e-05, 2.4813e+01, 6.6164e-01, - 1DIAGNOSTIC, 33, -9.437241347457e-01, 3.188977130784e-05, 2.5486e+01, 6.7295e-01, - 1DIAGNOSTIC, 34, -9.438246582461e-01, 2.800577293237e-05, 2.6122e+01, 6.3592e-01, - 1DIAGNOSTIC, 35, -9.439185766409e-01, 2.466313037265e-05, 2.6778e+01, 6.5604e-01, - 1DIAGNOSTIC, 36, -9.439999965361e-01, 2.176869179606e-05, 2.7443e+01, 6.6535e-01, - 1DIAGNOSTIC, 37, -9.440775002980e-01, 1.929910326278e-05, 2.8105e+01, 6.6216e-01, - 1DIAGNOSTIC, 38, -9.441487250641e-01, 1.717340054799e-05, 2.8770e+01, 6.6462e-01, - 1DIAGNOSTIC, 39, -9.442094240818e-01, 1.536934568181e-05, 2.9428e+01, 6.5850e-01, - 1DIAGNOSTIC, 40, -9.442620968003e-01, 1.375409572411e-05, 3.0100e+01, 6.7146e-01, - 1DIAGNOSTIC, 41, -9.443148521370e-01, 1.232942993906e-05, 3.0743e+01, 6.4293e-01, - 1DIAGNOSTIC, 42, -9.443663447610e-01, 1.102872066262e-05, 3.1389e+01, 6.4640e-01, - 1DIAGNOSTIC, 43, -9.444183423783e-01, 9.930523447325e-06, 3.2039e+01, 6.4968e-01, - 1DIAGNOSTIC, 44, -9.444592492333e-01, 8.966147296209e-06, 3.2705e+01, 6.6650e-01, - 1DIAGNOSTIC, 45, -9.444949866483e-01, 8.122366087823e-06, 3.3372e+01, 6.6672e-01, - 1DIAGNOSTIC, 46, -9.445293678325e-01, 7.360950647173e-06, 3.4062e+01, 6.8959e-01, - 1DIAGNOSTIC, 47, -9.445601126123e-01, 6.682061012064e-06, 3.4721e+01, 6.5934e-01, - 1DIAGNOSTIC, 48, -9.445874486945e-01, 6.070809043929e-06, 3.5375e+01, 6.5374e-01, - 1DIAGNOSTIC, 49, -9.446061858885e-01, 5.452652288466e-06, 3.6044e+01, 6.6933e-01, - 1DIAGNOSTIC, 50, -9.446268181023e-01, 4.839782362275e-06, 3.6712e+01, 6.6813e-01, - 1DIAGNOSTIC, 51, -9.446432495601e-01, 4.253905720099e-06, 3.7375e+01, 6.6307e-01, - 1DIAGNOSTIC, 52, -9.446578262322e-01, 3.721454129385e-06, 3.8048e+01, 6.7241e-01, - 1DIAGNOSTIC, 53, -9.446718860146e-01, 3.284624200531e-06, 3.8712e+01, 6.6421e-01, - 1DIAGNOSTIC, 54, -9.446745392904e-01, 2.847887157487e-06, 3.9376e+01, 6.6422e-01, - 1DIAGNOSTIC, 55, -9.446835450769e-01, 2.455159482422e-06, 4.0035e+01, 6.5869e-01, - 1DIAGNOSTIC, 56, -9.446842373335e-01, 2.082708720319e-06, 4.0693e+01, 6.5814e-01, - 1DIAGNOSTIC, 57, -9.446911314662e-01, 1.775708002062e-06, 4.1366e+01, 6.7325e-01, - 1DIAGNOSTIC, 58, -9.446970023820e-01, 1.534045159651e-06, 4.2030e+01, 6.6394e-01, - 1DIAGNOSTIC, 59, -9.447124754928e-01, 1.379814610274e-06, 4.2695e+01, 6.6453e-01, - 1DIAGNOSTIC, 60, -9.447162857410e-01, 1.271023073041e-06, 4.3360e+01, 6.6529e-01, - 1DIAGNOSTIC, 61, -9.447169563102e-01, 1.179168571414e-06, 4.4022e+01, 6.6261e-01, - 1DIAGNOSTIC, 62, -9.447181160522e-01, 1.103669286392e-06, 4.4696e+01, 6.7402e-01, - 1DIAGNOSTIC, 63, -9.447249402111e-01, 1.073809299097e-06, 4.5352e+01, 6.5593e-01, - 1DIAGNOSTIC, 64, -9.447249529362e-01, 1.000130935340e-06, 4.6024e+01, 6.7197e-01, - 1DIAGNOSTIC, 65, -9.447213248307e-01, 9.062014325462e-07, 4.6691e+01, 6.6702e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.874226579433e-01, 1.797693134862e+308, 5.2303e+01, 5.6119e+00, - 1DIAGNOSTIC, 2, -8.905118758585e-01, 1.797693134862e+308, 5.7670e+01, 5.3667e+00, - 1DIAGNOSTIC, 3, -8.940011988955e-01, 1.797693134862e+308, 6.3045e+01, 5.3748e+00, - 1DIAGNOSTIC, 4, -8.969239998830e-01, 1.797693134862e+308, 6.8347e+01, 5.3027e+00, - 1DIAGNOSTIC, 5, -8.992753546331e-01, 1.797693134862e+308, 7.3701e+01, 5.3531e+00, - 1DIAGNOSTIC, 6, -9.015453255688e-01, 1.797693134862e+308, 7.9051e+01, 5.3503e+00, - 1DIAGNOSTIC, 7, -9.034783707884e-01, 1.797693134862e+308, 8.4427e+01, 5.3760e+00, - 1DIAGNOSTIC, 8, -9.052125671203e-01, 1.797693134862e+308, 8.9779e+01, 5.3524e+00, - 1DIAGNOSTIC, 9, -9.068182729312e-01, 1.797693134862e+308, 9.5162e+01, 5.3829e+00, - 1DIAGNOSTIC, 10, -9.083470387867e-01, 1.471906354227e-03, 1.0053e+02, 5.3673e+00, - 1DIAGNOSTIC, 11, -9.095612283705e-01, 1.197352101805e-03, 1.0589e+02, 5.3614e+00, - 1DIAGNOSTIC, 12, -9.107871131517e-01, 9.736037931243e-04, 1.1126e+02, 5.3667e+00, - 1DIAGNOSTIC, 13, -9.117888778436e-01, 8.044490581547e-04, 1.1660e+02, 5.3444e+00, - 1DIAGNOSTIC, 14, -9.128272953889e-01, 6.750024356500e-04, 1.2205e+02, 5.4520e+00, - 1DIAGNOSTIC, 15, -9.137434349121e-01, 5.691185529039e-04, 1.2744e+02, 5.3813e+00, - 1DIAGNOSTIC, 16, -9.144188797969e-01, 4.817820192028e-04, 1.3279e+02, 5.3502e+00, - 1DIAGNOSTIC, 17, -9.150241937814e-01, 4.071009735654e-04, 1.3817e+02, 5.3810e+00, - 1DIAGNOSTIC, 18, -9.155708718140e-01, 3.426828363280e-04, 1.4350e+02, 5.3374e+00, - 1DIAGNOSTIC, 19, -9.160806209452e-01, 2.879505453121e-04, 1.4888e+02, 5.3791e+00, - 1DIAGNOSTIC, 20, -9.165521880360e-01, 2.431440033758e-04, 1.5426e+02, 5.3746e+00, - 1DIAGNOSTIC, 21, -9.169881212017e-01, 2.044551688015e-04, 1.5963e+02, 5.3760e+00, - 1DIAGNOSTIC, 22, -9.174008256869e-01, 1.734994169946e-04, 1.6501e+02, 5.3774e+00, - 1DIAGNOSTIC, 23, -9.177897821634e-01, 1.478282111855e-04, 1.7039e+02, 5.3821e+00, - 1DIAGNOSTIC, 24, -9.181617401419e-01, 1.287261674838e-04, 1.7574e+02, 5.3466e+00, - 1DIAGNOSTIC, 25, -9.185138119186e-01, 1.149010577617e-04, 1.8111e+02, 5.3734e+00, - 1DIAGNOSTIC, 26, -9.188523930431e-01, 1.035108499755e-04, 1.8647e+02, 5.3615e+00, - 1DIAGNOSTIC, 27, -9.191762080035e-01, 9.396483953149e-05, 1.9182e+02, 5.3485e+00, - 1DIAGNOSTIC, 28, -9.194894208189e-01, 8.583181985779e-05, 1.9719e+02, 5.3701e+00, - 1DIAGNOSTIC, 29, -9.197885751049e-01, 7.887008111257e-05, 2.0262e+02, 5.4244e+00, - 1DIAGNOSTIC, 30, -9.200764529651e-01, 7.283106583480e-05, 2.0797e+02, 5.3542e+00, - 1DIAGNOSTIC, 31, -9.203529838910e-01, 6.747645520224e-05, 2.1337e+02, 5.3964e+00, - 1DIAGNOSTIC, 32, -9.206177173078e-01, 6.268698295972e-05, 2.1875e+02, 5.3779e+00, - 1DIAGNOSTIC, 33, -9.208762939935e-01, 5.838361100127e-05, 2.2416e+02, 5.4163e+00, - 1DIAGNOSTIC, 34, -9.211204991850e-01, 5.446492152485e-05, 2.2953e+02, 5.3639e+00, - 1DIAGNOSTIC, 35, -9.213544604949e-01, 5.084107797551e-05, 2.3493e+02, 5.4011e+00, - 1DIAGNOSTIC, 36, -9.215782010837e-01, 4.748040244875e-05, 2.4028e+02, 5.3543e+00, - 1DIAGNOSTIC, 37, -9.217904526448e-01, 4.432572361984e-05, 2.4566e+02, 5.3816e+00, - 1DIAGNOSTIC, 38, -9.219969063761e-01, 4.140592150994e-05, 2.5103e+02, 5.3667e+00, - 1DIAGNOSTIC, 39, -9.221959495705e-01, 3.869868247584e-05, 2.5643e+02, 5.3991e+00, - 1DIAGNOSTIC, 40, -9.223860991519e-01, 3.618929232973e-05, 2.6179e+02, 5.3583e+00, - 1DIAGNOSTIC, 41, -9.225670105236e-01, 3.385586562715e-05, 2.6717e+02, 5.3871e+00, - 1DIAGNOSTIC, 42, -9.227393346908e-01, 3.167339454862e-05, 2.7253e+02, 5.3526e+00, - 1DIAGNOSTIC, 43, -9.229025140820e-01, 2.965337133209e-05, 2.7794e+02, 5.4169e+00, - 1DIAGNOSTIC, 44, -9.230598703133e-01, 2.776513435082e-05, 2.8333e+02, 5.3869e+00, - 1DIAGNOSTIC, 45, -9.232133165045e-01, 2.601887110541e-05, 2.8870e+02, 5.3712e+00, - 1DIAGNOSTIC, 46, -9.233588892974e-01, 2.439219935028e-05, 2.9408e+02, 5.3754e+00, - 1DIAGNOSTIC, 47, -9.235004536488e-01, 2.287754147290e-05, 2.9948e+02, 5.3984e+00, - 1DIAGNOSTIC, 48, -9.236350293383e-01, 2.148074764223e-05, 3.0483e+02, 5.3569e+00, - 1DIAGNOSTIC, 49, -9.237637148108e-01, 2.019907623705e-05, 3.1019e+02, 5.3543e+00, - 1DIAGNOSTIC, 50, -9.238871197820e-01, 1.901889743970e-05, 3.1560e+02, 5.4086e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.821413137755e-01, 1.797693134862e+308, 3.5966e+02, 4.4067e+01, - 1DIAGNOSTIC, 2, -8.840879173167e-01, 1.797693134862e+308, 4.0338e+02, 4.3718e+01, - 1DIAGNOSTIC, 3, -8.862657233094e-01, 1.797693134862e+308, 4.4692e+02, 4.3538e+01, - 1DIAGNOSTIC, 4, -8.883043466464e-01, 1.797693134862e+308, 4.9025e+02, 4.3332e+01, - 1DIAGNOSTIC, 5, -8.898446847028e-01, 1.797693134862e+308, 5.3362e+02, 4.3366e+01, - 1DIAGNOSTIC, 6, -8.910354468684e-01, 1.797693134862e+308, 5.7727e+02, 4.3656e+01, - 1DIAGNOSTIC, 7, -8.919869869609e-01, 1.797693134862e+308, 6.2056e+02, 4.3290e+01, - 1DIAGNOSTIC, 8, -8.927662376098e-01, 1.797693134862e+308, 6.6396e+02, 4.3396e+01, - 1DIAGNOSTIC, 9, -8.934472702287e-01, 1.797693134862e+308, 7.0740e+02, 4.3444e+01, - 1DIAGNOSTIC, 10, -8.940642003999e-01, 8.525370751622e-04, 7.5066e+02, 4.3253e+01, - 1DIAGNOSTIC, 11, -8.946562891221e-01, 6.565609160611e-04, 7.9411e+02, 4.3455e+01, - 1DIAGNOSTIC, 12, -8.952342828077e-01, 5.010392782473e-04, 8.3737e+02, 4.3256e+01, - 1DIAGNOSTIC, 13, -8.958083021561e-01, 3.911505303349e-04, 8.8078e+02, 4.3418e+01, - 1DIAGNOSTIC, 14, -8.964170331275e-01, 3.213451678776e-04, 9.2441e+02, 4.3624e+01, - 1DIAGNOSTIC, 15, -8.970578192123e-01, 2.775663415145e-04, 9.6814e+02, 4.3733e+01, - 1DIAGNOSTIC, 16, -8.976321519414e-01, 2.487311868077e-04, 1.0118e+03, 4.3668e+01, - 1DIAGNOSTIC, 17, -8.983436115320e-01, 2.314327070219e-04, 1.0555e+03, 4.3723e+01, - 1DIAGNOSTIC, 18, -8.988210695702e-01, 2.167469371276e-04, 1.0993e+03, 4.3745e+01, - 1DIAGNOSTIC, 19, -8.993861338996e-01, 2.043742406397e-04, 1.1430e+03, 4.3725e+01, - 1DIAGNOSTIC, 20, -8.998474095347e-01, 1.913310197917e-04, 1.1866e+03, 4.3636e+01, - Elapsed time (stage 2): 1187 - - -Total elapsed time: 1235 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:24 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:24 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:27 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:32 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:35 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:35 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 3912 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:36 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:39 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:40 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 3973 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:40 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/anat/sub-PNC003_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:43 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:43 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4017 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:43 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4026 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:55:43 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:24 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:26 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:26 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:27 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:28 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:31 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:31 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:32 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:33 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:35 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:36 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:36 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/surf/sub-PNC003_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:36 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:45 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:56 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01/sub-PNC003_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC003 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:56 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC003 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:57 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC003 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:56:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc/sub-PNC003_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc/sub-PNC003_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LabelImageGaussianInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:57:01 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -INFO: using NIfTI-1 qform -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_subcortical.nii.gz -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:57:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc/sub-PNC003_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc/sub-PNC003_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/xfm/sub-PNC003_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LabelImageGaussianInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:57:04 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -INFO: using NIfTI-1 qform -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_preproc.nii.gz -** AFNI converts NIFTI_datatype=8 (INT32) in file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_cerebellum.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:57:04 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC003_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 89.750 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/logs/proc_func_18-03-2024-26302.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:58:04 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC003 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-01/QC/sub-PNC003_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14975_micapipe_proc-func_sub-PNC003_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC003* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 89.817 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC003_ses-01 -========================reprocessing without filter=================== -sub-PNC003_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC003 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC003 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC003 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC003 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:58:24 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 07:58:24 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-1_bold.nii.gz is 34.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:00:31 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:02:38 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:02:53 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.23 (mm) at sub-brick 179 -++ Max delta displ in automask = 0.19 (mm) at sub-brick 169 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:16:05 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:16:23 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-2_bold.nii.gz is 34.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:18:32 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:20:40 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-02/func/sub-PNC003_ses-02_task-rest_echo-3_bold.nii.gz is 34.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:22:53 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.414 -1.822 3.151 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.192 -2.315 5.819 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.4 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:27:39 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:28:10 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5631ae2ec6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [111.602, 60.4191, -114.879] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5631ae163730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5631ae303320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5631ae2effa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [86.4485, 111.5, -133.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5631ae2f5e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5631aeb00230 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5631aeafe5c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [111.602, 60.4191, -114.879] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5631ae2f23f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5631af73a450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5631aeafcda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [86.4485, 111.5, -133.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5631ae2f9360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5631aff34780 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.828323503142e-01, 1.797693134862e+308, 4.4389e-02, 4.4388e-02, - 2DIAGNOSTIC, 2, -6.840180266256e-01, 1.797693134862e+308, 4.5824e-02, 1.4348e-03, - 2DIAGNOSTIC, 3, -6.878152682561e-01, 1.797693134862e+308, 4.7177e-02, 1.3528e-03, - 2DIAGNOSTIC, 4, -6.919240202676e-01, 1.797693134862e+308, 4.8819e-02, 1.6420e-03, - 2DIAGNOSTIC, 5, -6.970858655971e-01, 1.797693134862e+308, 5.0191e-02, 1.3721e-03, - 2DIAGNOSTIC, 6, -7.058009477239e-01, 1.797693134862e+308, 5.2329e-02, 2.1381e-03, - 2DIAGNOSTIC, 7, -7.078751152994e-01, 1.797693134862e+308, 5.3977e-02, 1.6479e-03, - 2DIAGNOSTIC, 8, -7.109200056654e-01, 1.797693134862e+308, 5.5531e-02, 1.5540e-03, - 2DIAGNOSTIC, 9, -7.098821892278e-01, 1.797693134862e+308, 5.7106e-02, 1.5750e-03, - 2DIAGNOSTIC, 10, -7.102202821954e-01, 3.057119252238e-03, 5.8676e-02, 1.5700e-03, - 2DIAGNOSTIC, 11, -7.103211957406e-01, 2.413036193212e-03, 6.0219e-02, 1.5430e-03, - 2DIAGNOSTIC, 12, -7.104352208429e-01, 1.703469646558e-03, 6.1979e-02, 1.7600e-03, - 2DIAGNOSTIC, 13, -7.106086317261e-01, 1.075862712071e-03, 6.4168e-02, 2.1889e-03, - 2DIAGNOSTIC, 14, -7.106171866098e-01, 5.604434012357e-04, 6.5716e-02, 1.5481e-03, - 2DIAGNOSTIC, 15, -7.106676683230e-01, 1.994546168174e-04, 6.7241e-02, 1.5252e-03, - 2DIAGNOSTIC, 16, -7.111611669502e-01, 9.753251019384e-05, 6.8788e-02, 1.5471e-03, - 2DIAGNOSTIC, 17, -7.115079320130e-01, 5.382271486354e-05, 7.0697e-02, 1.9090e-03, - 2DIAGNOSTIC, 18, -7.145046170214e-01, 1.463048581678e-04, 7.2909e-02, 2.2118e-03, - 2DIAGNOSTIC, 19, -7.260582907105e-01, 4.365895693730e-04, 7.5322e-02, 2.4130e-03, - 2DIAGNOSTIC, 20, -7.346241086562e-01, 8.294344764631e-04, 7.7496e-02, 2.1741e-03, - 2DIAGNOSTIC, 21, -7.383086868536e-01, 1.177245131158e-03, 7.9923e-02, 2.4271e-03, - 2DIAGNOSTIC, 22, -7.392922640286e-01, 1.405459714079e-03, 8.1529e-02, 1.6060e-03, - 2DIAGNOSTIC, 23, -7.404373918587e-01, 1.505924821890e-03, 8.3057e-02, 1.5278e-03, - 2DIAGNOSTIC, 24, -7.408343760915e-01, 1.460463605782e-03, 8.5449e-02, 2.3921e-03, - 2DIAGNOSTIC, 25, -7.409180987007e-01, 1.281815961026e-03, 8.6797e-02, 1.3480e-03, - 2DIAGNOSTIC, 26, -7.414141089096e-01, 1.014373843995e-03, 8.8128e-02, 1.3311e-03, - 2DIAGNOSTIC, 27, -7.419354738528e-01, 6.871432829790e-04, 9.0052e-02, 1.9238e-03, - 2DIAGNOSTIC, 28, -7.421431369878e-01, 3.620536954307e-04, 9.1916e-02, 1.8642e-03, - 2DIAGNOSTIC, 29, -7.426865771555e-01, 1.887851269635e-04, 9.3587e-02, 1.6711e-03, - 2DIAGNOSTIC, 30, -7.446383318319e-01, 1.473220926130e-04, 9.5320e-02, 1.7331e-03, - 2DIAGNOSTIC, 31, -7.448222079559e-01, 1.432918681893e-04, 9.7529e-02, 2.2089e-03, - 2DIAGNOSTIC, 32, -7.451211138768e-01, 1.417409609855e-04, 9.9050e-02, 1.5211e-03, - 2DIAGNOSTIC, 33, -7.452614302841e-01, 1.424999208790e-04, 1.0056e-01, 1.5140e-03, - 2DIAGNOSTIC, 34, -7.454864756881e-01, 1.369665872609e-04, 1.0230e-01, 1.7350e-03, - 2DIAGNOSTIC, 35, -7.458288003801e-01, 1.231869124550e-04, 1.0543e-01, 3.1281e-03, - 2DIAGNOSTIC, 36, -7.458405761259e-01, 1.039097338144e-04, 1.0690e-01, 1.4701e-03, - 2DIAGNOSTIC, 37, -7.458802709191e-01, 8.222618856260e-05, 1.0838e-01, 1.4870e-03, - 2DIAGNOSTIC, 38, -7.459227419715e-01, 5.667679030351e-05, 1.0985e-01, 1.4648e-03, - 2DIAGNOSTIC, 39, -7.459593885782e-01, 3.244067226739e-05, 1.1133e-01, 1.4770e-03, - 2DIAGNOSTIC, 40, -7.459925586081e-01, 2.582921272681e-05, 1.1283e-01, 1.5030e-03, - 2DIAGNOSTIC, 41, -7.460371194495e-01, 1.930164130371e-05, 1.1427e-01, 1.4429e-03, - 2DIAGNOSTIC, 42, -7.461300830988e-01, 1.500832984448e-05, 1.1574e-01, 1.4720e-03, - 2DIAGNOSTIC, 43, -7.462512757638e-01, 1.189701493966e-05, 1.1726e-01, 1.5171e-03, - 2DIAGNOSTIC, 44, -7.475349088262e-01, 2.116557732052e-05, 1.1945e-01, 2.1858e-03, - 2DIAGNOSTIC, 45, -7.478724037942e-01, 3.366646578678e-05, 1.2125e-01, 1.7998e-03, - 2DIAGNOSTIC, 46, -7.489853631228e-01, 5.205734663322e-05, 1.2362e-01, 2.3711e-03, - 2DIAGNOSTIC, 47, -7.489779709939e-01, 6.492221616707e-05, 1.2513e-01, 1.5121e-03, - 2DIAGNOSTIC, 48, -7.494955876339e-01, 7.573387756201e-05, 1.2662e-01, 1.4880e-03, - 2DIAGNOSTIC, 49, -7.510035082420e-01, 9.103227744927e-05, 1.2835e-01, 1.7321e-03, - 2DIAGNOSTIC, 50, -7.509279067398e-01, 9.632492667921e-05, 1.3030e-01, 1.9500e-03, - 2DIAGNOSTIC, 51, -7.512135358309e-01, 9.497115081018e-05, 1.3177e-01, 1.4679e-03, - 2DIAGNOSTIC, 52, -7.534553843427e-01, 1.022873153514e-04, 1.3345e-01, 1.6859e-03, - 2DIAGNOSTIC, 53, -7.594066144551e-01, 1.434173626639e-04, 1.3537e-01, 1.9190e-03, - 2DIAGNOSTIC, 54, -7.602173680251e-01, 1.831620397510e-04, 1.3716e-01, 1.7841e-03, - 2DIAGNOSTIC, 55, -7.616000112740e-01, 2.164127032682e-04, 1.3887e-01, 1.7130e-03, - 2DIAGNOSTIC, 56, -7.617534406346e-01, 2.370713228754e-04, 1.4037e-01, 1.5001e-03, - 2DIAGNOSTIC, 57, -7.618014161426e-01, 2.343133923186e-04, 1.4210e-01, 1.7321e-03, - 2DIAGNOSTIC, 58, -7.618623487420e-01, 2.122066688480e-04, 1.4386e-01, 1.7531e-03, - 2DIAGNOSTIC, 59, -7.619557615895e-01, 1.810594189431e-04, 1.4538e-01, 1.5230e-03, - 2DIAGNOSTIC, 60, -7.621236139544e-01, 1.347985797620e-04, 1.4708e-01, 1.6980e-03, - 2DIAGNOSTIC, 61, -7.639058625272e-01, 9.036555142991e-05, 1.4861e-01, 1.5311e-03, - 2DIAGNOSTIC, 62, -7.656907466733e-01, 6.270082355906e-05, 1.5034e-01, 1.7300e-03, - 2DIAGNOSTIC, 63, -7.685357162148e-01, 8.366422185761e-05, 1.5256e-01, 2.2240e-03, - 2DIAGNOSTIC, 64, -7.701425542541e-01, 1.100886980624e-04, 1.5405e-01, 1.4920e-03, - 2DIAGNOSTIC, 65, -7.935892055709e-01, 2.722537802737e-04, 1.5554e-01, 1.4892e-03, - 2DIAGNOSTIC, 66, -8.755739919014e-01, 8.767007531293e-04, 1.5778e-01, 2.2409e-03, - 2DIAGNOSTIC, 67, -8.873684121336e-01, 1.431134860414e-03, 1.5930e-01, 1.5152e-03, - 2DIAGNOSTIC, 68, -8.893762579817e-01, 1.845805895479e-03, 1.6103e-01, 1.7290e-03, - 2DIAGNOSTIC, 69, -8.903482964976e-01, 2.082015938624e-03, 1.6273e-01, 1.6980e-03, - 2DIAGNOSTIC, 70, -8.903093816643e-01, 2.108018616061e-03, 1.6421e-01, 1.4849e-03, - 2DIAGNOSTIC, 71, -8.892274098958e-01, 1.926438283363e-03, 1.6569e-01, 1.4780e-03, - 2DIAGNOSTIC, 72, -8.908127217262e-01, 1.582391474349e-03, 1.6721e-01, 1.5171e-03, - 2DIAGNOSTIC, 73, -8.939298634152e-01, 1.135364861143e-03, 1.6876e-01, 1.5500e-03, - 2DIAGNOSTIC, 74, -8.981457002798e-01, 6.249380634031e-04, 1.7023e-01, 1.4760e-03, - 2DIAGNOSTIC, 75, -9.173483801167e-01, 2.724803274508e-04, 1.7223e-01, 2.0020e-03, - 2DIAGNOSTIC, 76, -9.242729961479e-01, 3.386546132767e-04, 1.7447e-01, 2.2349e-03, - 2DIAGNOSTIC, 77, -9.297183691413e-01, 4.536921781626e-04, 1.7646e-01, 1.9932e-03, - 2DIAGNOSTIC, 78, -9.313098074643e-01, 5.392119301861e-04, 1.7915e-01, 2.6910e-03, - 2DIAGNOSTIC, 79, -9.313480858261e-01, 5.749177053476e-04, 1.8064e-01, 1.4899e-03, - 2DIAGNOSTIC, 80, -9.316574393755e-01, 5.547218307115e-04, 1.8210e-01, 1.4610e-03, - 2DIAGNOSTIC, 81, -9.321260149274e-01, 4.783324000772e-04, 1.8359e-01, 1.4839e-03, - 2DIAGNOSTIC, 82, -9.327897404578e-01, 3.688516318883e-04, 1.8531e-01, 1.7211e-03, - 2DIAGNOSTIC, 83, -9.331225512132e-01, 2.430209634889e-04, 1.8675e-01, 1.4379e-03, - 2DIAGNOSTIC, 84, -9.327556575701e-01, 1.125124701285e-04, 1.8820e-01, 1.4501e-03, - 2DIAGNOSTIC, 85, -9.333079333775e-01, 5.932907934669e-05, 1.8970e-01, 1.5059e-03, - 2DIAGNOSTIC, 86, -9.340056058496e-01, 3.353332118741e-05, 1.9136e-01, 1.6561e-03, - 2DIAGNOSTIC, 87, -9.347908586875e-01, 3.096712895667e-05, 1.9286e-01, 1.5001e-03, - 2DIAGNOSTIC, 88, -9.351461160635e-01, 3.353816806184e-05, 1.9430e-01, 1.4439e-03, - 2DIAGNOSTIC, 89, -9.363432321790e-01, 3.795185320834e-05, 1.9579e-01, 1.4901e-03, - 2DIAGNOSTIC, 90, -9.382611714155e-01, 4.744737682947e-05, 1.9820e-01, 2.4061e-03, - 2DIAGNOSTIC, 91, -9.383798926499e-01, 5.419275420324e-05, 1.9973e-01, 1.5278e-03, - 2DIAGNOSTIC, 92, -9.386396366101e-01, 5.924634149766e-05, 2.0126e-01, 1.5290e-03, - 2DIAGNOSTIC, 93, -9.400356788289e-01, 6.531274546385e-05, 2.0320e-01, 1.9438e-03, - 2DIAGNOSTIC, 94, -9.401549594478e-01, 6.379233566000e-05, 2.0469e-01, 1.4920e-03, - 2DIAGNOSTIC, 95, -9.404631123641e-01, 5.933060474047e-05, 2.0616e-01, 1.4670e-03, - 2DIAGNOSTIC, 96, -9.423894871313e-01, 5.905580369363e-05, 2.0860e-01, 2.4409e-03, - 2DIAGNOSTIC, 97, -9.422533234346e-01, 5.541340063771e-05, 2.1102e-01, 2.4240e-03, - 2DIAGNOSTIC, 98, -9.424659192994e-01, 4.859187487978e-05, 2.1253e-01, 1.5070e-03, - 2DIAGNOSTIC, 99, -9.422985553628e-01, 4.084011618407e-05, 2.1400e-01, 1.4741e-03, - 2DIAGNOSTIC, 100, -9.429934303609e-01, 3.866171238544e-05, 2.1570e-01, 1.6999e-03, - 2DIAGNOSTIC, 101, -9.441976327262e-01, 3.732029400236e-05, 2.1720e-01, 1.4920e-03, - 2DIAGNOSTIC, 102, -9.434934367519e-01, 3.066415337879e-05, 2.1870e-01, 1.5061e-03, - 2DIAGNOSTIC, 103, -9.437800255371e-01, 2.724086987136e-05, 2.2019e-01, 1.4920e-03, - 2DIAGNOSTIC, 104, -9.441630538472e-01, 2.304230231892e-05, 2.2164e-01, 1.4429e-03, - 2DIAGNOSTIC, 105, -9.438033964870e-01, 1.627624368258e-05, 2.2406e-01, 2.4230e-03, - 2DIAGNOSTIC, 106, -9.441112907415e-01, 1.551771620218e-05, 2.2552e-01, 1.4620e-03, - 2DIAGNOSTIC, 107, -9.442977950448e-01, 1.348121231269e-05, 2.2699e-01, 1.4720e-03, - 2DIAGNOSTIC, 108, -9.447013738702e-01, 1.228162491030e-05, 2.2850e-01, 1.5101e-03, - 2DIAGNOSTIC, 109, -9.473519500902e-01, 1.781413891056e-05, 2.2998e-01, 1.4732e-03, - 2DIAGNOSTIC, 110, -9.527091844438e-01, 4.038159395607e-05, 2.3262e-01, 2.6379e-03, - 2DIAGNOSTIC, 111, -9.529136287077e-01, 6.273391522200e-05, 2.3410e-01, 1.4880e-03, - 2DIAGNOSTIC, 112, -9.530022032666e-01, 7.694007772369e-05, 2.3560e-01, 1.4930e-03, - 2DIAGNOSTIC, 113, -9.531102597670e-01, 8.483119241272e-05, 2.3731e-01, 1.7159e-03, - 2DIAGNOSTIC, 114, -9.531866920808e-01, 8.563002237470e-05, 2.3937e-01, 2.0549e-03, - 2DIAGNOSTIC, 115, -9.532488771645e-01, 7.695553072185e-05, 2.4085e-01, 1.4858e-03, - 2DIAGNOSTIC, 116, -9.533281248813e-01, 6.224465756869e-05, 2.4231e-01, 1.4589e-03, - 2DIAGNOSTIC, 117, -9.546744558293e-01, 4.665485034204e-05, 2.4404e-01, 1.7290e-03, - 2DIAGNOSTIC, 118, -9.549625744013e-01, 2.876431467132e-05, 2.4600e-01, 1.9569e-03, - 2DIAGNOSTIC, 119, -9.584247935095e-01, 2.572458564306e-05, 2.5167e-01, 5.6741e-03, - 2DIAGNOSTIC, 120, -9.584247822295e-01, 3.539534126342e-05, 2.5312e-01, 1.4460e-03, - 2DIAGNOSTIC, 121, -9.584248070146e-01, 4.217430806527e-05, 2.5453e-01, 1.4160e-03, - 2DIAGNOSTIC, 122, -9.584248489180e-01, 4.510457311413e-05, 2.5602e-01, 1.4830e-03, - 2DIAGNOSTIC, 123, -9.584249197538e-01, 4.387505060156e-05, 2.5754e-01, 1.5180e-03, - 2DIAGNOSTIC, 124, -9.584250394730e-01, 3.855089500951e-05, 2.5899e-01, 1.4560e-03, - 2DIAGNOSTIC, 125, -9.584252417357e-01, 2.980312606711e-05, 2.6045e-01, 1.4591e-03, - 2DIAGNOSTIC, 126, -9.584255832442e-01, 1.862793426234e-05, 2.6193e-01, 1.4789e-03, - 2DIAGNOSTIC, 127, -9.584261592634e-01, 9.579278399648e-06, 2.6343e-01, 1.4970e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.921899102963e-01, 1.797693134862e+308, 3.1380e-01, 5.0371e-02, - 2DIAGNOSTIC, 2, -5.912304602039e-01, 1.797693134862e+308, 3.1669e-01, 2.8880e-03, - 2DIAGNOSTIC, 3, -5.925869559836e-01, 1.797693134862e+308, 3.2010e-01, 3.4151e-03, - 2DIAGNOSTIC, 4, -5.945976738133e-01, 1.797693134862e+308, 3.2307e-01, 2.9700e-03, - 2DIAGNOSTIC, 5, -5.960320824868e-01, 1.797693134862e+308, 3.2560e-01, 2.5270e-03, - 2DIAGNOSTIC, 6, -5.965177640150e-01, 1.797693134862e+308, 3.2818e-01, 2.5790e-03, - 2DIAGNOSTIC, 7, -5.974982639856e-01, 1.797693134862e+308, 3.3046e-01, 2.2790e-03, - 2DIAGNOSTIC, 8, -5.994460344426e-01, 1.797693134862e+308, 3.3296e-01, 2.5060e-03, - 2DIAGNOSTIC, 9, -5.999176418590e-01, 1.797693134862e+308, 3.3544e-01, 2.4781e-03, - 2DIAGNOSTIC, 10, -6.004483661425e-01, 1.056871393956e-03, 3.3924e-01, 3.7990e-03, - 2DIAGNOSTIC, 11, -6.004599396508e-01, 9.380657246014e-04, 3.4164e-01, 2.4030e-03, - 2DIAGNOSTIC, 12, -6.004607184497e-01, 7.172061388978e-04, 3.4433e-01, 2.6910e-03, - 2DIAGNOSTIC, 13, -6.004851861765e-01, 5.143264939463e-04, 3.4672e-01, 2.3830e-03, - 2DIAGNOSTIC, 14, -6.004834746686e-01, 3.611307781073e-04, 3.4949e-01, 2.7750e-03, - 2DIAGNOSTIC, 15, -6.005198853741e-01, 2.429623225626e-04, 3.5224e-01, 2.7480e-03, - 2DIAGNOSTIC, 16, -6.005568929747e-01, 1.330955679235e-04, 3.5498e-01, 2.7452e-03, - 2DIAGNOSTIC, 17, -6.019019625629e-01, 8.797865484029e-05, 3.5824e-01, 3.2530e-03, - 2DIAGNOSTIC, 18, -6.022470196512e-01, 9.929086058492e-05, 3.6065e-01, 2.4149e-03, - 2DIAGNOSTIC, 19, -6.023704900108e-01, 1.150369836648e-04, 3.6342e-01, 2.7721e-03, - 2DIAGNOSTIC, 20, -6.030973979480e-01, 1.490332903191e-04, 3.6827e-01, 4.8430e-03, - 2DIAGNOSTIC, 21, -6.031184011494e-01, 1.663400283172e-04, 3.7057e-01, 2.3019e-03, - 2DIAGNOSTIC, 22, -6.031915583509e-01, 1.679687778521e-04, 3.7288e-01, 2.3100e-03, - 2DIAGNOSTIC, 23, -6.033020802845e-01, 1.566575250525e-04, 3.7526e-01, 2.3851e-03, - 2DIAGNOSTIC, 24, -6.034338256491e-01, 1.345746556575e-04, 3.7768e-01, 2.4140e-03, - 2DIAGNOSTIC, 25, -6.036841547041e-01, 1.073240320708e-04, 3.8006e-01, 2.3808e-03, - 2DIAGNOSTIC, 26, -6.040359435359e-01, 7.857592274983e-05, 3.8245e-01, 2.3880e-03, - 2DIAGNOSTIC, 27, -6.046043069038e-01, 7.820309770768e-05, 3.8507e-01, 2.6190e-03, - 2DIAGNOSTIC, 28, -6.051452628969e-01, 8.549320034389e-05, 3.8776e-01, 2.6970e-03, - 2DIAGNOSTIC, 29, -6.051636455703e-01, 8.620605303390e-05, 3.9052e-01, 2.7580e-03, - 2DIAGNOSTIC, 30, -6.052089659327e-01, 9.118808705760e-05, 3.9332e-01, 2.7969e-03, - 2DIAGNOSTIC, 31, -6.052654562167e-01, 8.850196974584e-05, 3.9581e-01, 2.4941e-03, - 2DIAGNOSTIC, 32, -6.052982001825e-01, 7.909833120728e-05, 3.9823e-01, 2.4230e-03, - 2DIAGNOSTIC, 33, -6.054073960751e-01, 6.592746028736e-05, 4.0166e-01, 3.4230e-03, - 2DIAGNOSTIC, 34, -6.054207836361e-01, 4.941788016714e-05, 4.0405e-01, 2.3930e-03, - 2DIAGNOSTIC, 35, -6.054347032795e-01, 3.290365649549e-05, 4.0671e-01, 2.6631e-03, - 2DIAGNOSTIC, 36, -6.054349885952e-01, 1.877390125508e-05, 4.0943e-01, 2.7208e-03, - 2DIAGNOSTIC, 37, -6.055610115459e-01, 1.238416343150e-05, 4.1212e-01, 2.6829e-03, - 2DIAGNOSTIC, 38, -6.058368225421e-01, 1.533628503576e-05, 4.1446e-01, 2.3410e-03, - 2DIAGNOSTIC, 39, -6.071126863073e-01, 3.234308634628e-05, 4.1714e-01, 2.6851e-03, - 2DIAGNOSTIC, 40, -6.076246772923e-01, 5.170111322646e-05, 4.2086e-01, 3.7160e-03, - 2DIAGNOSTIC, 41, -6.075694959891e-01, 6.532590430202e-05, 4.2548e-01, 4.6179e-03, - 2DIAGNOSTIC, 42, -6.075927541755e-01, 7.301804364418e-05, 4.2864e-01, 3.1610e-03, - 2DIAGNOSTIC, 43, -6.076165117715e-01, 7.487231119910e-05, 4.3117e-01, 2.5280e-03, - 2DIAGNOSTIC, 44, -6.076556900762e-01, 6.986205368885e-05, 4.3367e-01, 2.5029e-03, - 2DIAGNOSTIC, 45, -6.076900604093e-01, 5.889148403294e-05, 4.3712e-01, 3.4502e-03, - 2DIAGNOSTIC, 46, -6.076752067488e-01, 4.288467555271e-05, 4.3980e-01, 2.6829e-03, - 2DIAGNOSTIC, 47, -6.076279204655e-01, 2.448755534600e-05, 4.4223e-01, 2.4259e-03, - 2DIAGNOSTIC, 48, -6.076437385821e-01, 7.151323079237e-06, 4.4494e-01, 2.7089e-03, - 2DIAGNOSTIC, 49, -6.076266531104e-01, 1.853067294767e-06, 4.4756e-01, 2.6190e-03, - 2DIAGNOSTIC, 50, -6.076638964679e-01, 1.845109966914e-06, 4.5022e-01, 2.6610e-03, - 2DIAGNOSTIC, 51, -6.077398735368e-01, 1.909953284238e-06, 4.5382e-01, 3.6061e-03, - 2DIAGNOSTIC, 52, -6.078029970464e-01, 2.624327539336e-06, 4.5733e-01, 3.5100e-03, - 2DIAGNOSTIC, 53, -6.078269485873e-01, 3.531764749057e-06, 4.6087e-01, 3.5360e-03, - 2DIAGNOSTIC, 54, -6.080943314539e-01, 6.793840717660e-06, 4.6525e-01, 4.3781e-03, - 2DIAGNOSTIC, 55, -6.081490900231e-01, 1.004372979522e-05, 4.6812e-01, 2.8760e-03, - 2DIAGNOSTIC, 56, -6.082439955728e-01, 1.295491672918e-05, 4.7221e-01, 4.0839e-03, - 2DIAGNOSTIC, 57, -6.083136182305e-01, 1.476454159423e-05, 4.7498e-01, 2.7690e-03, - 2DIAGNOSTIC, 58, -6.082653876377e-01, 1.488782783417e-05, 4.7854e-01, 3.5651e-03, - 2DIAGNOSTIC, 59, -6.082668905880e-01, 1.350301294739e-05, 4.8175e-01, 3.2110e-03, - 2DIAGNOSTIC, 60, -6.082693052023e-01, 1.120742701145e-05, 4.8503e-01, 3.2759e-03, - 2DIAGNOSTIC, 61, -6.082806129908e-01, 8.633772180838e-06, 4.8831e-01, 3.2840e-03, - 2DIAGNOSTIC, 62, -6.083379793608e-01, 6.291694907477e-06, 4.9151e-01, 3.1941e-03, - 2DIAGNOSTIC, 63, -6.084462260949e-01, 4.408278452057e-06, 4.9419e-01, 2.6820e-03, - 2DIAGNOSTIC, 64, -6.089359764962e-01, 7.764047901655e-06, 4.9760e-01, 3.4151e-03, - 2DIAGNOSTIC, 65, -6.090594293257e-01, 1.150080988956e-05, 5.0172e-01, 4.1120e-03, - 2DIAGNOSTIC, 66, -6.090742324855e-01, 1.485325659029e-05, 5.0482e-01, 3.1080e-03, - 2DIAGNOSTIC, 67, -6.091107842653e-01, 1.752950026915e-05, 5.0765e-01, 2.8288e-03, - 2DIAGNOSTIC, 68, -6.090892994747e-01, 1.798343440767e-05, 5.1036e-01, 2.7030e-03, - 2DIAGNOSTIC, 69, -6.091084334374e-01, 1.683023298016e-05, 5.1317e-01, 2.8119e-03, - 2DIAGNOSTIC, 70, -6.091678892494e-01, 1.453412947200e-05, 5.1600e-01, 2.8341e-03, - 2DIAGNOSTIC, 71, -6.095490966936e-01, 1.357731088436e-05, 5.1922e-01, 3.2201e-03, - 2DIAGNOSTIC, 72, -6.096044852854e-01, 1.208050399666e-05, 5.2286e-01, 3.6371e-03, - 2DIAGNOSTIC, 73, -6.096301689830e-01, 1.031214572251e-05, 5.2552e-01, 2.6569e-03, - 2DIAGNOSTIC, 74, -6.099068058515e-01, 1.252439505218e-05, 5.2884e-01, 3.3250e-03, - 2DIAGNOSTIC, 75, -6.099551274443e-01, 1.452667067738e-05, 5.3148e-01, 2.6369e-03, - 2DIAGNOSTIC, 76, -6.099688205490e-01, 1.525723267588e-05, 5.3454e-01, 3.0639e-03, - 2DIAGNOSTIC, 77, -6.100176008104e-01, 1.508181876258e-05, 5.3750e-01, 2.9609e-03, - 2DIAGNOSTIC, 78, -6.100966680739e-01, 1.386734490898e-05, 5.4210e-01, 4.5979e-03, - 2DIAGNOSTIC, 79, -6.100817185515e-01, 1.139387589938e-05, 5.4467e-01, 2.5680e-03, - 2DIAGNOSTIC, 80, -6.102060768792e-01, 8.944209502360e-06, 5.4730e-01, 2.6309e-03, - 2DIAGNOSTIC, 81, -6.103393541256e-01, 8.713739737307e-06, 5.5000e-01, 2.7032e-03, - 2DIAGNOSTIC, 82, -6.104375352871e-01, 8.562622478838e-06, 5.5266e-01, 2.6622e-03, - 2DIAGNOSTIC, 83, -6.104716776567e-01, 7.920042676982e-06, 5.5517e-01, 2.5010e-03, - 2DIAGNOSTIC, 84, -6.104759203799e-01, 8.142484353843e-06, 5.5794e-01, 2.7761e-03, - 2DIAGNOSTIC, 85, -6.104829341060e-01, 7.919689544434e-06, 5.6201e-01, 4.0731e-03, - 2DIAGNOSTIC, 86, -6.104835824518e-01, 7.032890280700e-06, 5.6447e-01, 2.4559e-03, - 2DIAGNOSTIC, 87, -6.104850006946e-01, 5.779642833348e-06, 5.6703e-01, 2.5551e-03, - 2DIAGNOSTIC, 88, -6.104858297113e-01, 4.475084979550e-06, 5.6964e-01, 2.6100e-03, - 2DIAGNOSTIC, 89, -6.104862263174e-01, 2.722750831229e-06, 5.7234e-01, 2.7061e-03, - 2DIAGNOSTIC, 90, -6.104870922667e-01, 1.422469257372e-06, 5.7537e-01, 3.0241e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.697105994669e-01, 1.797693134862e+308, 6.4573e-01, 7.0365e-02, - 2DIAGNOSTIC, 2, -4.703427925651e-01, 1.797693134862e+308, 6.5864e-01, 1.2912e-02, - 2DIAGNOSTIC, 3, -4.710358264514e-01, 1.797693134862e+308, 6.7188e-01, 1.3237e-02, - 2DIAGNOSTIC, 4, -4.715888087504e-01, 1.797693134862e+308, 6.8495e-01, 1.3072e-02, - 2DIAGNOSTIC, 5, -4.721984083547e-01, 1.797693134862e+308, 6.9930e-01, 1.4350e-02, - 2DIAGNOSTIC, 6, -4.733012531329e-01, 1.797693134862e+308, 7.1324e-01, 1.3941e-02, - 2DIAGNOSTIC, 7, -4.751863932502e-01, 1.797693134862e+308, 7.2680e-01, 1.3561e-02, - 2DIAGNOSTIC, 8, -4.765229423883e-01, 1.797693134862e+308, 7.4225e-01, 1.5448e-02, - 2DIAGNOSTIC, 9, -4.781141644950e-01, 1.797693134862e+308, 7.6115e-01, 1.8894e-02, - 2DIAGNOSTIC, 10, -4.785363549162e-01, 1.283006087978e-03, 7.7573e-01, 1.4588e-02, - 2DIAGNOSTIC, 11, -4.790922614241e-01, 1.213379064466e-03, 7.9015e-01, 1.4413e-02, - 2DIAGNOSTIC, 12, -4.803601667799e-01, 1.140146613628e-03, 8.0392e-01, 1.3771e-02, - 2DIAGNOSTIC, 13, -4.817740313961e-01, 1.070153067001e-03, 8.2667e-01, 2.2756e-02, - 2DIAGNOSTIC, 14, -4.819291154978e-01, 9.426215528383e-04, 8.4018e-01, 1.3510e-02, - 2DIAGNOSTIC, 15, -4.824305994674e-01, 7.919237835915e-04, 8.5616e-01, 1.5974e-02, - 2DIAGNOSTIC, 16, -4.825995389251e-01, 6.346844743604e-04, 8.7067e-01, 1.4511e-02, - 2DIAGNOSTIC, 17, -4.826166080539e-01, 5.033381309548e-04, 8.8624e-01, 1.5573e-02, - 2DIAGNOSTIC, 18, -4.826180051206e-01, 3.830394831896e-04, 8.9980e-01, 1.3559e-02, - 2DIAGNOSTIC, 19, -4.826226154702e-01, 2.904846402310e-04, 9.1320e-01, 1.3399e-02, - 2DIAGNOSTIC, 20, -4.826381602811e-01, 1.938611387100e-04, 9.2749e-01, 1.4292e-02, - 2DIAGNOSTIC, 21, -4.826582476261e-01, 1.043149350927e-04, 9.4041e-01, 1.2915e-02, - 2DIAGNOSTIC, 22, -4.826928831359e-01, 4.772260066616e-05, 9.5324e-01, 1.2832e-02, - 2DIAGNOSTIC, 23, -4.827536707814e-01, 2.995524374617e-05, 9.6597e-01, 1.2729e-02, - 2DIAGNOSTIC, 24, -4.827816885927e-01, 1.520912876191e-05, 9.8772e-01, 2.1756e-02, - 2DIAGNOSTIC, 25, -4.828733435900e-01, 1.432848890073e-05, 1.0104e+00, 2.2723e-02, - 2DIAGNOSTIC, 26, -4.828811390885e-01, 1.627288875101e-05, 1.0240e+00, 1.3529e-02, - 2DIAGNOSTIC, 27, -4.829351159882e-01, 1.823266458102e-05, 1.0370e+00, 1.2985e-02, - 2DIAGNOSTIC, 28, -4.830147876000e-01, 2.014342120193e-05, 1.0496e+00, 1.2634e-02, - 2DIAGNOSTIC, 29, -4.830368516040e-01, 2.062824094513e-05, 1.0632e+00, 1.3607e-02, - 2DIAGNOSTIC, 30, -4.830694996718e-01, 2.019428156850e-05, 1.0754e+00, 1.2178e-02, - 2DIAGNOSTIC, 31, -4.832325479866e-01, 2.148192921379e-05, 1.0900e+00, 1.4590e-02, - 2DIAGNOSTIC, 32, -4.833848680531e-01, 2.411873333864e-05, 1.1058e+00, 1.5815e-02, - 2DIAGNOSTIC, 33, -4.835199059834e-01, 2.786202757356e-05, 1.1179e+00, 1.2126e-02, - 2DIAGNOSTIC, 34, -4.837362698987e-01, 3.305530547324e-05, 1.1294e+00, 1.1465e-02, - 2DIAGNOSTIC, 35, -4.842567044606e-01, 4.522398964756e-05, 1.1410e+00, 1.1598e-02, - 2DIAGNOSTIC, 36, -4.844577168968e-01, 5.570454465957e-05, 1.1581e+00, 1.7119e-02, - 2DIAGNOSTIC, 37, -4.845598065657e-01, 6.287567530742e-05, 1.1707e+00, 1.2590e-02, - 2DIAGNOSTIC, 38, -4.846038214332e-01, 6.579204151554e-05, 1.1825e+00, 1.1812e-02, - 2DIAGNOSTIC, 39, -4.846385862537e-01, 6.324044488901e-05, 1.1932e+00, 1.0692e-02, - 2DIAGNOSTIC, 40, -4.846618200674e-01, 5.554737331516e-05, 1.2045e+00, 1.1326e-02, - 2DIAGNOSTIC, 41, -4.847158298083e-01, 4.607469935452e-05, 1.2162e+00, 1.1643e-02, - 2DIAGNOSTIC, 42, -4.847474904894e-01, 3.537667801949e-05, 1.2280e+00, 1.1827e-02, - 2DIAGNOSTIC, 43, -4.848496643729e-01, 2.516433261545e-05, 1.2431e+00, 1.5114e-02, - 2DIAGNOSTIC, 44, -4.849607982606e-01, 1.730477487549e-05, 1.2555e+00, 1.2373e-02, - 2DIAGNOSTIC, 45, -4.849847117959e-01, 1.528001385070e-05, 1.2690e+00, 1.3554e-02, - 2DIAGNOSTIC, 46, -4.850021951434e-01, 1.474775515610e-05, 1.2822e+00, 1.3191e-02, - 2DIAGNOSTIC, 47, -4.850090613244e-01, 1.426259622584e-05, 1.2945e+00, 1.2260e-02, - 2DIAGNOSTIC, 48, -4.850610416883e-01, 1.365728432218e-05, 1.3068e+00, 1.2309e-02, - 2DIAGNOSTIC, 49, -4.856911050254e-01, 1.980584636936e-05, 1.3219e+00, 1.5070e-02, - 2DIAGNOSTIC, 50, -4.858148424493e-01, 2.539704403921e-05, 1.3370e+00, 1.5171e-02, - 2DIAGNOSTIC, 51, -4.858602937556e-01, 2.962094223045e-05, 1.3496e+00, 1.2550e-02, - 2DIAGNOSTIC, 52, -4.860028722064e-01, 3.297772338058e-05, 1.3649e+00, 1.5320e-02, - 2DIAGNOSTIC, 53, -4.860660911531e-01, 3.486003222957e-05, 1.3769e+00, 1.2050e-02, - 2DIAGNOSTIC, 54, -4.861084724758e-01, 3.494058230365e-05, 1.3888e+00, 1.1882e-02, - 2DIAGNOSTIC, 55, -4.861698450334e-01, 3.260964003088e-05, 1.4008e+00, 1.1946e-02, - 2DIAGNOSTIC, 56, -4.862197186627e-01, 2.808743691984e-05, 1.4182e+00, 1.7392e-02, - 2DIAGNOSTIC, 57, -4.862282120775e-01, 2.129538371110e-05, 1.4289e+00, 1.0728e-02, - 2DIAGNOSTIC, 58, -4.862549263227e-01, 1.338152437345e-05, 1.4397e+00, 1.0789e-02, - 2DIAGNOSTIC, 59, -4.862784517212e-01, 1.101674186860e-05, 1.4509e+00, 1.1218e-02, - 2DIAGNOSTIC, 60, -4.863029288465e-01, 9.178458907747e-06, 1.4620e+00, 1.1096e-02, - 2DIAGNOSTIC, 61, -4.863508209709e-01, 7.435067122794e-06, 1.4747e+00, 1.2678e-02, - 2DIAGNOSTIC, 62, -4.864325125456e-01, 7.200999058096e-06, 1.4860e+00, 1.1282e-02, - 2DIAGNOSTIC, 63, -4.864939743282e-01, 7.481952161909e-06, 1.4983e+00, 1.2309e-02, - 2DIAGNOSTIC, 64, -4.865275145411e-01, 7.766658876574e-06, 1.5107e+00, 1.2445e-02, - 2DIAGNOSTIC, 65, -4.865312962911e-01, 7.928990392793e-06, 1.5219e+00, 1.1221e-02, - 2DIAGNOSTIC, 66, -4.865636437355e-01, 8.108607851519e-06, 1.5339e+00, 1.1936e-02, - 2DIAGNOSTIC, 67, -4.865840750926e-01, 7.783196810711e-06, 1.5456e+00, 1.1698e-02, - 2DIAGNOSTIC, 68, -4.866084797569e-01, 7.195646214233e-06, 1.5558e+00, 1.0262e-02, - 2DIAGNOSTIC, 69, -4.867128927210e-01, 7.072518381931e-06, 1.5661e+00, 1.0238e-02, - 2DIAGNOSTIC, 70, -4.879202198550e-01, 1.665444729165e-05, 1.5806e+00, 1.4500e-02, - 2DIAGNOSTIC, 71, -4.882786332883e-01, 2.748261806856e-05, 1.5995e+00, 1.8972e-02, - 2DIAGNOSTIC, 72, -4.882971514252e-01, 3.625256220801e-05, 1.6099e+00, 1.0336e-02, - 2DIAGNOSTIC, 73, -4.883417666711e-01, 4.235935263866e-05, 1.6205e+00, 1.0603e-02, - 2DIAGNOSTIC, 74, -4.884162030289e-01, 4.510519761112e-05, 1.6313e+00, 1.0841e-02, - 2DIAGNOSTIC, 75, -4.884843557729e-01, 4.384473803973e-05, 1.6422e+00, 1.0886e-02, - 2DIAGNOSTIC, 76, -4.885081132839e-01, 3.878753464560e-05, 1.6528e+00, 1.0641e-02, - 2DIAGNOSTIC, 77, -4.885408708624e-01, 3.071677542354e-05, 1.6647e+00, 1.1831e-02, - 2DIAGNOSTIC, 78, -4.885636502095e-01, 2.041173213267e-05, 1.6865e+00, 2.1859e-02, - 2DIAGNOSTIC, 79, -4.885632416990e-01, 8.978080821681e-06, 1.6989e+00, 1.2383e-02, - 2DIAGNOSTIC, 80, -4.885601673792e-01, 5.778300572475e-06, 1.7110e+00, 1.2122e-02, - 2DIAGNOSTIC, 81, -4.885587097809e-01, 4.734999373477e-06, 1.7216e+00, 1.0544e-02, - 2DIAGNOSTIC, 82, -4.885590684037e-01, 3.433527049065e-06, 1.7319e+00, 1.0300e-02, - 2DIAGNOSTIC, 83, -4.885595325853e-01, 2.178205708929e-06, 1.7436e+00, 1.1705e-02, - 2DIAGNOSTIC, 84, -4.885600861678e-01, 1.295734648061e-06, 1.7560e+00, 1.2372e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.103547540587e-01, 1.797693134862e+308, 1.9337e+00, 1.7778e-01, - Elapsed time (stage 0): 1.9661e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.230655138952e-01, 1.797693134862e+308, 3.5859e-02, 3.5858e-02, - 2DIAGNOSTIC, 2, -9.265782388213e-01, 1.797693134862e+308, 3.7068e-02, 1.2090e-03, - 2DIAGNOSTIC, 3, -9.319688399516e-01, 1.797693134862e+308, 3.8298e-02, 1.2300e-03, - 2DIAGNOSTIC, 4, -9.420950458083e-01, 1.797693134862e+308, 3.9530e-02, 1.2319e-03, - 2DIAGNOSTIC, 5, -9.505981991215e-01, 1.797693134862e+308, 4.0730e-02, 1.2000e-03, - 2DIAGNOSTIC, 6, -9.539285108852e-01, 1.797693134862e+308, 4.2127e-02, 1.3969e-03, - 2DIAGNOSTIC, 7, -9.687407529363e-01, 1.797693134862e+308, 4.3362e-02, 1.2350e-03, - 2DIAGNOSTIC, 8, -9.735084313424e-01, 1.797693134862e+308, 4.4993e-02, 1.6310e-03, - 2DIAGNOSTIC, 9, -9.927468902370e-01, 1.797693134862e+308, 4.6396e-02, 1.4029e-03, - 2DIAGNOSTIC, 10, -9.976154984557e-01, 5.190701344094e-03, 4.7966e-02, 1.5709e-03, - 2DIAGNOSTIC, 11, -9.998976047045e-01, 4.830285704267e-03, 4.9329e-02, 1.3621e-03, - 2DIAGNOSTIC, 12, -1.007998529530e+00, 4.386570395478e-03, 5.0700e-02, 1.3719e-03, - 2DIAGNOSTIC, 13, -1.019399911793e+00, 3.984834581227e-03, 5.2490e-02, 1.7900e-03, - 2DIAGNOSTIC, 14, -1.022972583057e+00, 3.557386850857e-03, 5.3843e-02, 1.3530e-03, - 2DIAGNOSTIC, 15, -1.032475804542e+00, 3.217083996179e-03, 5.5256e-02, 1.4122e-03, - 2DIAGNOSTIC, 16, -1.050156219361e+00, 3.002054987238e-03, 5.7628e-02, 2.3720e-03, - 2DIAGNOSTIC, 17, -1.055405125563e+00, 2.872694497482e-03, 5.9005e-02, 1.3771e-03, - 2DIAGNOSTIC, 18, -1.061725634510e+00, 2.662993572230e-03, 6.0577e-02, 1.5719e-03, - 2DIAGNOSTIC, 19, -1.065231236234e+00, 2.574044443211e-03, 6.2135e-02, 1.5581e-03, - 2DIAGNOSTIC, 20, -1.066019859523e+00, 2.337528531635e-03, 6.3741e-02, 1.6060e-03, - 2DIAGNOSTIC, 21, -1.067390017749e+00, 1.953791370343e-03, 6.5306e-02, 1.5650e-03, - 2DIAGNOSTIC, 22, -1.069784652584e+00, 1.556777930062e-03, 6.7081e-02, 1.7750e-03, - 2DIAGNOSTIC, 23, -1.070474959409e+00, 1.201277037523e-03, 6.8682e-02, 1.6010e-03, - 2DIAGNOSTIC, 24, -1.071874851294e+00, 8.229993736066e-04, 7.0016e-02, 1.3340e-03, - 2DIAGNOSTIC, 25, -1.072804695025e+00, 5.129339124541e-04, 7.1598e-02, 1.5821e-03, - 2DIAGNOSTIC, 26, -1.073191267264e+00, 3.742849537209e-04, 7.2951e-02, 1.3530e-03, - 2DIAGNOSTIC, 27, -1.073791963110e+00, 2.704357095724e-04, 7.4313e-02, 1.3621e-03, - 2DIAGNOSTIC, 28, -1.074350436730e+00, 2.167096579757e-04, 7.6321e-02, 2.0082e-03, - 2DIAGNOSTIC, 29, -1.074424378185e+00, 1.809585478115e-04, 7.7689e-02, 1.3680e-03, - 2DIAGNOSTIC, 30, -1.074805264500e+00, 1.415125278972e-04, 7.9030e-02, 1.3409e-03, - 2DIAGNOSTIC, 31, -1.075087998532e+00, 1.058155953677e-04, 8.0678e-02, 1.6479e-03, - 2DIAGNOSTIC, 32, -1.075437857702e+00, 8.628481626075e-05, 8.3404e-02, 2.7261e-03, - 2DIAGNOSTIC, 33, -1.076382123637e+00, 7.333194186004e-05, 8.6021e-02, 2.6171e-03, - 2DIAGNOSTIC, 34, -1.075156708054e+00, 5.545460434592e-05, 8.9020e-02, 2.9991e-03, - 2DIAGNOSTIC, 35, -1.073536161480e+00, 2.842074444657e-05, 9.0622e-02, 1.6019e-03, - 2DIAGNOSTIC, 36, -1.073996072219e+00, 7.054254480419e-06, 9.2007e-02, 1.3850e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.148931049203e-01, 1.797693134862e+308, 1.3694e-01, 4.4936e-02, - 2DIAGNOSTIC, 2, -7.145954502083e-01, 1.797693134862e+308, 1.4036e-01, 3.4151e-03, - 2DIAGNOSTIC, 3, -7.159479007765e-01, 1.797693134862e+308, 1.4363e-01, 3.2730e-03, - 2DIAGNOSTIC, 4, -7.178793094599e-01, 1.797693134862e+308, 1.4633e-01, 2.6970e-03, - 2DIAGNOSTIC, 5, -7.202178419172e-01, 1.797693134862e+308, 1.4875e-01, 2.4240e-03, - 2DIAGNOSTIC, 6, -7.229145530069e-01, 1.797693134862e+308, 1.5102e-01, 2.2628e-03, - 2DIAGNOSTIC, 7, -7.248512342552e-01, 1.797693134862e+308, 1.5319e-01, 2.1720e-03, - 2DIAGNOSTIC, 8, -7.363754228981e-01, 1.797693134862e+308, 1.5570e-01, 2.5160e-03, - 2DIAGNOSTIC, 9, -7.391428372136e-01, 1.797693134862e+308, 1.5825e-01, 2.5489e-03, - 2DIAGNOSTIC, 10, -7.418671188032e-01, 2.609073423350e-03, 1.6100e-01, 2.7490e-03, - 2DIAGNOSTIC, 11, -7.443020374380e-01, 2.674741873571e-03, 1.6383e-01, 2.8300e-03, - 2DIAGNOSTIC, 12, -7.466900461272e-01, 2.555638424205e-03, 1.6631e-01, 2.4800e-03, - 2DIAGNOSTIC, 13, -7.484809505814e-01, 2.313273272215e-03, 1.6972e-01, 3.4080e-03, - 2DIAGNOSTIC, 14, -7.491879343947e-01, 1.967576482701e-03, 1.7221e-01, 2.4889e-03, - 2DIAGNOSTIC, 15, -7.502219677422e-01, 1.579811451657e-03, 1.7538e-01, 3.1729e-03, - 2DIAGNOSTIC, 16, -7.516663499230e-01, 1.199130159360e-03, 1.7823e-01, 2.8501e-03, - 2DIAGNOSTIC, 17, -7.524498639458e-01, 8.086371708880e-04, 1.8113e-01, 2.8980e-03, - 2DIAGNOSTIC, 18, -7.527687419986e-01, 6.414271942090e-04, 1.8377e-01, 2.6441e-03, - 2DIAGNOSTIC, 19, -7.530101798558e-01, 4.939147464078e-04, 1.8721e-01, 3.4389e-03, - 2DIAGNOSTIC, 20, -7.531022563506e-01, 3.695059310774e-04, 1.8991e-01, 2.6958e-03, - 2DIAGNOSTIC, 21, -7.531166674763e-01, 2.667276432529e-04, 1.9373e-01, 3.8259e-03, - 2DIAGNOSTIC, 22, -7.531286270181e-01, 1.899721612162e-04, 1.9659e-01, 2.8520e-03, - 2DIAGNOSTIC, 23, -7.530972440933e-01, 1.319222092475e-04, 1.9950e-01, 2.9130e-03, - 2DIAGNOSTIC, 24, -7.531363938128e-01, 7.844676322147e-05, 2.0301e-01, 3.5069e-03, - 2DIAGNOSTIC, 25, -7.532096972353e-01, 3.861391477439e-05, 2.0633e-01, 3.3219e-03, - 2DIAGNOSTIC, 26, -7.532908722917e-01, 2.063049256724e-05, 2.1014e-01, 3.8159e-03, - 2DIAGNOSTIC, 27, -7.533537024803e-01, 1.410790060868e-05, 2.1362e-01, 3.4761e-03, - 2DIAGNOSTIC, 28, -7.533553273614e-01, 1.115898375441e-05, 2.1657e-01, 2.9519e-03, - 2DIAGNOSTIC, 29, -7.533704587963e-01, 1.084496631888e-05, 2.1917e-01, 2.5971e-03, - 2DIAGNOSTIC, 30, -7.534018413973e-01, 1.118336046091e-05, 2.2206e-01, 2.8901e-03, - 2DIAGNOSTIC, 31, -7.534381950450e-01, 1.113679067177e-05, 2.2506e-01, 2.9981e-03, - 2DIAGNOSTIC, 32, -7.534712655526e-01, 1.068412987812e-05, 2.2757e-01, 2.5160e-03, - 2DIAGNOSTIC, 33, -7.534896118143e-01, 9.199705724702e-06, 2.3106e-01, 3.4859e-03, - 2DIAGNOSTIC, 34, -7.535229085254e-01, 7.837090544492e-06, 2.3458e-01, 3.5250e-03, - 2DIAGNOSTIC, 35, -7.535235776321e-01, 6.679096890248e-06, 2.3726e-01, 2.6760e-03, - 2DIAGNOSTIC, 36, -7.535272377003e-01, 5.920122676622e-06, 2.4187e-01, 4.6129e-03, - 2DIAGNOSTIC, 37, -7.535272408323e-01, 5.375918739177e-06, 2.4617e-01, 4.2949e-03, - 2DIAGNOSTIC, 38, -7.535272408679e-01, 4.448292655338e-06, 2.4974e-01, 3.5729e-03, - 2DIAGNOSTIC, 39, -7.535272408699e-01, 3.368721619792e-06, 2.5349e-01, 3.7479e-03, - 2DIAGNOSTIC, 40, -7.535272408700e-01, 2.395564101580e-06, 2.5714e-01, 3.6490e-03, - 2DIAGNOSTIC, 41, -7.535272408700e-01, 1.654177938144e-06, 2.6049e-01, 3.3538e-03, - 2DIAGNOSTIC, 42, -7.535272408700e-01, 1.164283674332e-06, 2.6323e-01, 2.7440e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.933362223625e-01, 1.797693134862e+308, 3.2654e-01, 6.3308e-02, - 2DIAGNOSTIC, 2, -5.936091841210e-01, 1.797693134862e+308, 3.3976e-01, 1.3219e-02, - 2DIAGNOSTIC, 3, -5.939418116646e-01, 1.797693134862e+308, 3.5314e-01, 1.3377e-02, - 2DIAGNOSTIC, 4, -5.943354935923e-01, 1.797693134862e+308, 3.6540e-01, 1.2257e-02, - 2DIAGNOSTIC, 5, -5.948107899450e-01, 1.797693134862e+308, 3.7787e-01, 1.2473e-02, - 2DIAGNOSTIC, 6, -5.952371254208e-01, 1.797693134862e+308, 3.9144e-01, 1.3574e-02, - 2DIAGNOSTIC, 7, -5.955081322586e-01, 1.797693134862e+308, 4.1237e-01, 2.0932e-02, - 2DIAGNOSTIC, 8, -5.955384519093e-01, 1.797693134862e+308, 4.2439e-01, 1.2013e-02, - 2DIAGNOSTIC, 9, -5.956213210976e-01, 1.797693134862e+308, 4.3629e-01, 1.1897e-02, - 2DIAGNOSTIC, 10, -5.957390656744e-01, 2.850919749584e-04, 4.4880e-01, 1.2517e-02, - 2DIAGNOSTIC, 11, -5.958945334694e-01, 2.262594243343e-04, 4.6103e-01, 1.2229e-02, - 2DIAGNOSTIC, 12, -5.960834183917e-01, 1.754041577542e-04, 4.7339e-01, 1.2355e-02, - 2DIAGNOSTIC, 13, -5.962501522355e-01, 1.350585216085e-04, 4.9013e-01, 1.6745e-02, - 2DIAGNOSTIC, 14, -5.962932168301e-01, 1.031370543828e-04, 5.0381e-01, 1.3679e-02, - 2DIAGNOSTIC, 15, -5.963271882410e-01, 8.224457276079e-05, 5.1618e-01, 1.2369e-02, - 2DIAGNOSTIC, 16, -5.964280665310e-01, 7.212657715155e-05, 5.3383e-01, 1.7647e-02, - 2DIAGNOSTIC, 17, -5.964505007589e-01, 6.486900075141e-05, 5.4675e-01, 1.2921e-02, - 2DIAGNOSTIC, 18, -5.965218323394e-01, 5.526940906284e-05, 5.5978e-01, 1.3033e-02, - 2DIAGNOSTIC, 19, -5.965723579468e-01, 4.507471665262e-05, 5.7271e-01, 1.2926e-02, - 2DIAGNOSTIC, 20, -5.966023200037e-01, 3.537419718234e-05, 5.8522e-01, 1.2516e-02, - 2DIAGNOSTIC, 21, -5.967339504721e-01, 2.989148491482e-05, 6.0085e-01, 1.5623e-02, - 2DIAGNOSTIC, 22, -5.967513387903e-01, 2.657399490191e-05, 6.1342e-01, 1.2579e-02, - 2DIAGNOSTIC, 23, -5.968322107138e-01, 2.634984347823e-05, 6.2615e-01, 1.2730e-02, - 2DIAGNOSTIC, 24, -5.971132465234e-01, 3.023425228744e-05, 6.4639e-01, 2.0241e-02, - 2DIAGNOSTIC, 25, -5.971676333275e-01, 3.259890389667e-05, 6.5858e-01, 1.2188e-02, - 2DIAGNOSTIC, 26, -5.972434725064e-01, 3.510983093979e-05, 6.7088e-01, 1.2298e-02, - 2DIAGNOSTIC, 27, -5.973324999721e-01, 3.622969429855e-05, 6.8349e-01, 1.2613e-02, - 2DIAGNOSTIC, 28, -5.974602684163e-01, 3.731727444876e-05, 6.9747e-01, 1.3976e-02, - 2DIAGNOSTIC, 29, -5.975825675547e-01, 3.766268683609e-05, 7.1775e-01, 2.0283e-02, - 2DIAGNOSTIC, 30, -5.975877525256e-01, 3.500697737516e-05, 7.3112e-01, 1.3365e-02, - 2DIAGNOSTIC, 31, -5.976072213701e-01, 3.173608194919e-05, 7.4516e-01, 1.4039e-02, - 2DIAGNOSTIC, 32, -5.976299974122e-01, 2.637650915410e-05, 7.5779e-01, 1.2638e-02, - 2DIAGNOSTIC, 33, -5.976380148347e-01, 2.008282627699e-05, 7.7609e-01, 1.8299e-02, - 2DIAGNOSTIC, 34, -5.976387884628e-01, 1.627654546874e-05, 7.9155e-01, 1.5453e-02, - 2DIAGNOSTIC, 35, -5.976383556349e-01, 1.197654999659e-05, 8.0653e-01, 1.4983e-02, - 2DIAGNOSTIC, 36, -5.976378261372e-01, 7.869953031842e-06, 8.2077e-01, 1.4243e-02, - 2DIAGNOSTIC, 37, -5.976373288163e-01, 4.428268147103e-06, 8.3380e-01, 1.3024e-02, - 2DIAGNOSTIC, 38, -5.976354723131e-01, 2.365357618547e-06, 8.4684e-01, 1.3047e-02, - 2DIAGNOSTIC, 39, -5.976361875933e-01, 1.771507722483e-06, 8.6065e-01, 1.3803e-02, - 2DIAGNOSTIC, 40, -5.976370578426e-01, 1.186182322969e-06, 8.7298e-01, 1.2330e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.008986712150e-01, 1.797693134862e+308, 1.0695e+00, 1.9656e-01, - Elapsed time (stage 1): 1.0898e+00 - - -Total elapsed time: 3.0566e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:28:14 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 36 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 97 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 85.63% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 85.63% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[20265 10593 9532 3136 11164 0 0 0 2567 1530 998 1081 - 228 1477 7719 293 6610 1046 1497 0 0 222 0 0 - 0 0 446 0 0 0 0 0 0 0 0 0] -[233284 95917 93334 10633 21545 11756 11397 7106 6115 6816 - 5028 2243 3198 1450 256 1226 1689 656 236 1254 - 669 1082 275 216 335 334 0 344 0 257 - 0 523 267 529 0 0] -[11220 0 13585 0 11657 0 0 8813 0 244 8417 12585 - 0 13288 221 445 0 10356 0 9546 3127 0 12164 615 - 0 18715 0 0 0 0 0 0 5674 0 0 0] -[ 202 478 180000 2126 304 0 826 0 0 8978 - 386 179218 10947 899 0 15681 723 598 0 0 - 354 3935 173267 826 1498 661 10577 10255 4666 1407 - 1329 0 611 275 571 361] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:37:53 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:37:59 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:41 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:41 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:41 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:53 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:41:56 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC003 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:42:30 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:42:57 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:44:58 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:44:59 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:46:16 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:46:17 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55f1fe399d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [86.8977, 111.949, -133.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f1fe210730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc5c44fd010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x55f1fe39d020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.051, 60.8682, -115.329] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f1fe3a30c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc5c0e3e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55f1fe3b3840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [86.8977, 111.949, -133.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f1fe39f890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc5bba36010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x55f1fe3b73e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.051, 60.8682, -115.329] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f1fe3a6130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc5b8377010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.710997564376e-01, 1.797693134862e+308, 2.5181e-01, 2.5181e-01, - 2DIAGNOSTIC, 2, -4.721689105429e-01, 1.797693134862e+308, 2.5313e-01, 1.3218e-03, - 2DIAGNOSTIC, 3, -4.734239683843e-01, 1.797693134862e+308, 2.5467e-01, 1.5378e-03, - 2DIAGNOSTIC, 4, -4.758902983314e-01, 1.797693134862e+308, 2.5605e-01, 1.3890e-03, - 2DIAGNOSTIC, 5, -4.811171378408e-01, 1.797693134862e+308, 2.5744e-01, 1.3831e-03, - 2DIAGNOSTIC, 6, -4.849990533198e-01, 1.797693134862e+308, 2.5911e-01, 1.6761e-03, - 2DIAGNOSTIC, 7, -4.880199180323e-01, 1.797693134862e+308, 2.6054e-01, 1.4300e-03, - 2DIAGNOSTIC, 8, -4.886688019438e-01, 1.797693134862e+308, 2.6237e-01, 1.8270e-03, - 2DIAGNOSTIC, 9, -4.974347828996e-01, 1.797693134862e+308, 2.6440e-01, 2.0339e-03, - 2DIAGNOSTIC, 10, -5.209205528012e-01, 5.208630117600e-03, 2.6644e-01, 2.0318e-03, - 2DIAGNOSTIC, 11, -5.340451995119e-01, 6.465868620065e-03, 2.6863e-01, 2.1901e-03, - 2DIAGNOSTIC, 12, -5.490755534508e-01, 7.677298987357e-03, 2.7058e-01, 1.9562e-03, - 2DIAGNOSTIC, 13, -5.652396921834e-01, 8.742849395777e-03, 2.7253e-01, 1.9472e-03, - 2DIAGNOSTIC, 14, -5.841586006959e-01, 9.671015060658e-03, 2.7428e-01, 1.7538e-03, - 2DIAGNOSTIC, 15, -5.887863228642e-01, 9.919385741430e-03, 2.7602e-01, 1.7321e-03, - 2DIAGNOSTIC, 16, -5.817719820415e-01, 9.133431785790e-03, 2.7873e-01, 2.7139e-03, - 2DIAGNOSTIC, 17, -5.832938199343e-01, 7.782874873914e-03, 2.8058e-01, 1.8508e-03, - 2DIAGNOSTIC, 18, -5.838936889869e-01, 5.916582088450e-03, 2.8251e-01, 1.9329e-03, - 2DIAGNOSTIC, 19, -5.911553270102e-01, 4.153247414277e-03, 2.8429e-01, 1.7729e-03, - 2DIAGNOSTIC, 20, -5.916705605452e-01, 2.839879459627e-03, 2.8574e-01, 1.4560e-03, - 2DIAGNOSTIC, 21, -5.929333695382e-01, 1.773640383325e-03, 2.8772e-01, 1.9732e-03, - 2DIAGNOSTIC, 22, -5.934838435797e-01, 1.023708332296e-03, 2.8946e-01, 1.7469e-03, - 2DIAGNOSTIC, 23, -5.939684396692e-01, 6.178221738872e-04, 2.9126e-01, 1.8001e-03, - 2DIAGNOSTIC, 24, -5.951033888032e-01, 6.238637763581e-04, 2.9333e-01, 2.0700e-03, - 2DIAGNOSTIC, 25, -5.946195650769e-01, 6.615072258104e-04, 2.9534e-01, 2.0041e-03, - 2DIAGNOSTIC, 26, -5.952619332943e-01, 5.081658637041e-04, 2.9701e-01, 1.6711e-03, - 2DIAGNOSTIC, 27, -5.957846377800e-01, 3.600456472499e-04, 2.9877e-01, 1.7660e-03, - 2DIAGNOSTIC, 28, -5.967080379390e-01, 2.139418899940e-04, 3.0049e-01, 1.7200e-03, - 2DIAGNOSTIC, 29, -6.025296928470e-01, 2.912411620982e-04, 3.0329e-01, 2.7950e-03, - 2DIAGNOSTIC, 30, -6.047028097374e-01, 3.787743436088e-04, 3.0513e-01, 1.8389e-03, - 2DIAGNOSTIC, 31, -6.051198398729e-01, 4.526325510264e-04, 3.0709e-01, 1.9591e-03, - 2DIAGNOSTIC, 32, -6.069510152991e-01, 5.181925008519e-04, 3.0898e-01, 1.8928e-03, - 2DIAGNOSTIC, 33, -6.078307786265e-01, 5.503452930213e-04, 3.1065e-01, 1.6730e-03, - 2DIAGNOSTIC, 34, -6.095272168840e-01, 5.695953758453e-04, 3.1276e-01, 2.1081e-03, - 2DIAGNOSTIC, 35, -6.101306154553e-01, 5.345324708086e-04, 3.1541e-01, 2.6498e-03, - 2DIAGNOSTIC, 36, -6.102141560929e-01, 4.623876748942e-04, 3.1706e-01, 1.6510e-03, - 2DIAGNOSTIC, 37, -6.109016014952e-01, 3.681902089374e-04, 3.1871e-01, 1.6470e-03, - 2DIAGNOSTIC, 38, -6.113421260040e-01, 2.602665850015e-04, 3.2032e-01, 1.6069e-03, - 2DIAGNOSTIC, 39, -6.116210287954e-01, 2.114382344148e-04, 3.2194e-01, 1.6251e-03, - 2DIAGNOSTIC, 40, -6.125307306234e-01, 1.840530578741e-04, 3.2384e-01, 1.9031e-03, - 2DIAGNOSTIC, 41, -6.128740767481e-01, 1.495021994142e-04, 3.2548e-01, 1.6398e-03, - 2DIAGNOSTIC, 42, -6.138904612314e-01, 1.363861067707e-04, 3.2712e-01, 1.6341e-03, - 2DIAGNOSTIC, 43, -6.173596212667e-01, 1.606957852744e-04, 3.2871e-01, 1.5900e-03, - 2DIAGNOSTIC, 44, -6.480749241432e-01, 5.333697136908e-04, 3.3067e-01, 1.9600e-03, - 2DIAGNOSTIC, 45, -7.388276381696e-01, 1.827037265826e-03, 3.3312e-01, 2.4550e-03, - 2DIAGNOSTIC, 46, -7.573721397829e-01, 3.048501880352e-03, 3.3476e-01, 1.6360e-03, - 2DIAGNOSTIC, 47, -7.874117830377e-01, 4.237262178119e-03, 3.3636e-01, 1.6022e-03, - 2DIAGNOSTIC, 48, -8.210476335592e-01, 5.300393212340e-03, 3.3833e-01, 1.9670e-03, - 2DIAGNOSTIC, 49, -8.245034090735e-01, 5.824069952120e-03, 3.3996e-01, 1.6351e-03, - 2DIAGNOSTIC, 50, -8.328143696181e-01, 5.842780415252e-03, 3.4186e-01, 1.8990e-03, - 2DIAGNOSTIC, 51, -8.609937735929e-01, 5.563907157557e-03, 3.4394e-01, 2.0759e-03, - 2DIAGNOSTIC, 52, -8.677800069418e-01, 4.843482700503e-03, 3.4602e-01, 2.0850e-03, - 2DIAGNOSTIC, 53, -8.905496298550e-01, 3.927934594694e-03, 3.4760e-01, 1.5762e-03, - 2DIAGNOSTIC, 54, -9.041701177980e-01, 3.044090665432e-03, 3.4992e-01, 2.3198e-03, - 2DIAGNOSTIC, 55, -9.058059459300e-01, 2.682179553889e-03, 3.5203e-01, 2.1141e-03, - 2DIAGNOSTIC, 56, -9.049912405627e-01, 2.222724589772e-03, 3.5388e-01, 1.8439e-03, - 2DIAGNOSTIC, 57, -9.053667642869e-01, 1.806884019899e-03, 3.5569e-01, 1.8139e-03, - 2DIAGNOSTIC, 58, -9.049095574638e-01, 1.493468554965e-03, 3.5728e-01, 1.5910e-03, - 2DIAGNOSTIC, 59, -9.038560162072e-01, 1.069686691055e-03, 3.5887e-01, 1.5869e-03, - 2DIAGNOSTIC, 60, -9.041721222193e-01, 6.236274863171e-04, 3.6048e-01, 1.6079e-03, - 2DIAGNOSTIC, 61, -9.057616557441e-01, 3.529734304835e-04, 3.6209e-01, 1.6110e-03, - 2DIAGNOSTIC, 62, -9.060416645395e-01, 1.063915176052e-04, 3.6369e-01, 1.6072e-03, - 2DIAGNOSTIC, 63, -9.065537655919e-01, 1.708420585083e-05, 3.6529e-01, 1.5910e-03, - 2DIAGNOSTIC, 64, -9.098168045868e-01, 4.280116972267e-05, 3.6806e-01, 2.7790e-03, - 2DIAGNOSTIC, 65, -9.113494123481e-01, 8.369077929227e-05, 3.6989e-01, 1.8210e-03, - 2DIAGNOSTIC, 66, -9.112421809750e-01, 1.086574863910e-04, 3.7171e-01, 1.8270e-03, - 2DIAGNOSTIC, 67, -9.107032544623e-01, 1.216666629996e-04, 3.7334e-01, 1.6279e-03, - 2DIAGNOSTIC, 68, -9.101520199582e-01, 1.168231883013e-04, 3.7492e-01, 1.5819e-03, - 2DIAGNOSTIC, 69, -9.103040512484e-01, 9.533114983915e-05, 3.7648e-01, 1.5540e-03, - 2DIAGNOSTIC, 70, -9.105338740377e-01, 6.825912419784e-05, 3.7805e-01, 1.5759e-03, - 2DIAGNOSTIC, 71, -9.108989597234e-01, 4.727407352474e-05, 3.7976e-01, 1.7040e-03, - 2DIAGNOSTIC, 72, -9.114805598077e-01, 2.781194112647e-05, 3.8159e-01, 1.8320e-03, - 2DIAGNOSTIC, 73, -9.126982761745e-01, 1.571180071031e-05, 3.8409e-01, 2.5020e-03, - 2DIAGNOSTIC, 74, -9.129199057417e-01, 2.134707300125e-05, 3.8598e-01, 1.8930e-03, - 2DIAGNOSTIC, 75, -9.133132841563e-01, 3.520682967512e-05, 3.8836e-01, 2.3758e-03, - 2DIAGNOSTIC, 76, -9.130365631645e-01, 4.329044991590e-05, 3.8990e-01, 1.5419e-03, - 2DIAGNOSTIC, 77, -9.124813055015e-01, 4.138512280670e-05, 3.9161e-01, 1.7042e-03, - 2DIAGNOSTIC, 78, -9.125465573583e-01, 3.311240248207e-05, 3.9328e-01, 1.6789e-03, - 2DIAGNOSTIC, 79, -9.134200440352e-01, 2.708143409735e-05, 3.9493e-01, 1.6470e-03, - 2DIAGNOSTIC, 80, -9.144793067354e-01, 2.498714825993e-05, 3.9686e-01, 1.9250e-03, - 2DIAGNOSTIC, 81, -9.167081982323e-01, 3.325165928783e-05, 3.9904e-01, 2.1799e-03, - 2DIAGNOSTIC, 82, -9.168039203355e-01, 4.111924290931e-05, 4.0097e-01, 1.9350e-03, - 2DIAGNOSTIC, 83, -9.162507177392e-01, 4.814576593656e-05, 4.0311e-01, 2.1431e-03, - 2DIAGNOSTIC, 84, -9.163903112900e-01, 5.210825715853e-05, 4.0596e-01, 2.8419e-03, - 2DIAGNOSTIC, 85, -9.164962645466e-01, 5.311136700968e-05, 4.0846e-01, 2.5070e-03, - 2DIAGNOSTIC, 86, -9.165669047636e-01, 4.797895051819e-05, 4.1073e-01, 2.2669e-03, - 2DIAGNOSTIC, 87, -9.181122849731e-01, 4.293123403877e-05, 4.1232e-01, 1.5950e-03, - 2DIAGNOSTIC, 88, -9.181958972383e-01, 3.454865783751e-05, 4.1399e-01, 1.6670e-03, - 2DIAGNOSTIC, 89, -9.183129477171e-01, 2.748555233239e-05, 4.1604e-01, 2.0452e-03, - 2DIAGNOSTIC, 90, -9.183684831426e-01, 2.257028635847e-05, 4.1768e-01, 1.6398e-03, - 2DIAGNOSTIC, 91, -9.184678699856e-01, 2.544698955964e-05, 4.1916e-01, 1.4811e-03, - 2DIAGNOSTIC, 92, -9.185944706497e-01, 2.672841015802e-05, 4.2142e-01, 2.2581e-03, - 2DIAGNOSTIC, 93, -9.186356141018e-01, 2.328468843013e-05, 4.2304e-01, 1.6210e-03, - 2DIAGNOSTIC, 94, -9.187499091159e-01, 1.884764304900e-05, 4.2493e-01, 1.8909e-03, - 2DIAGNOSTIC, 95, -9.182805121566e-01, 1.135095663186e-05, 4.2701e-01, 2.0850e-03, - 2DIAGNOSTIC, 96, -9.190170745739e-01, 6.073767675379e-06, 4.2859e-01, 1.5788e-03, - 2DIAGNOSTIC, 97, -9.184028644716e-01, 3.915373359217e-06, 4.3048e-01, 1.8842e-03, - 2DIAGNOSTIC, 98, -9.185466850001e-01, 2.411712401479e-06, 4.3231e-01, 1.8330e-03, - 2DIAGNOSTIC, 99, -9.192398473102e-01, 3.846852493479e-06, 4.3821e-01, 5.8970e-03, - 2DIAGNOSTIC, 100, -9.192398387215e-01, 5.031807201039e-06, 4.3977e-01, 1.5690e-03, - 2DIAGNOSTIC, 101, -9.192398665762e-01, 6.113392066531e-06, 4.4132e-01, 1.5469e-03, - 2DIAGNOSTIC, 102, -9.192399136663e-01, 7.121097073098e-06, 4.4293e-01, 1.6081e-03, - 2DIAGNOSTIC, 103, -9.192399932562e-01, 7.604378994674e-06, 4.4453e-01, 1.6000e-03, - 2DIAGNOSTIC, 104, -9.192401277308e-01, 7.788724577804e-06, 4.4612e-01, 1.5919e-03, - 2DIAGNOSTIC, 105, -9.192403548094e-01, 5.483484606682e-06, 4.4772e-01, 1.5960e-03, - 2DIAGNOSTIC, 106, -9.192407378944e-01, 5.429974550749e-06, 4.4932e-01, 1.6050e-03, - 2DIAGNOSTIC, 107, -9.192413831168e-01, 2.772593180706e-06, 4.5090e-01, 1.5819e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.521963097908e-01, 1.797693134862e+308, 7.0858e-01, 2.5768e-01, - 2DIAGNOSTIC, 2, -7.533740086549e-01, 1.797693134862e+308, 7.1088e-01, 2.2960e-03, - 2DIAGNOSTIC, 3, -7.538502697311e-01, 1.797693134862e+308, 7.1326e-01, 2.3870e-03, - 2DIAGNOSTIC, 4, -7.538046299319e-01, 1.797693134862e+308, 7.1533e-01, 2.0680e-03, - 2DIAGNOSTIC, 5, -7.543226597018e-01, 1.797693134862e+308, 7.1771e-01, 2.3789e-03, - 2DIAGNOSTIC, 6, -7.551140709300e-01, 1.797693134862e+308, 7.2002e-01, 2.3069e-03, - 2DIAGNOSTIC, 7, -7.553968788151e-01, 1.797693134862e+308, 7.2224e-01, 2.2209e-03, - 2DIAGNOSTIC, 8, -7.562226440519e-01, 1.797693134862e+308, 7.2415e-01, 1.9090e-03, - 2DIAGNOSTIC, 9, -7.570260133716e-01, 1.797693134862e+308, 7.2615e-01, 2.0051e-03, - 2DIAGNOSTIC, 10, -7.591361564740e-01, 4.800947371871e-04, 7.2870e-01, 2.5470e-03, - 2DIAGNOSTIC, 11, -7.655362649371e-01, 6.855685715640e-04, 7.3276e-01, 4.0569e-03, - 2DIAGNOSTIC, 12, -7.659880777838e-01, 8.411668939948e-04, 7.3490e-01, 2.1381e-03, - 2DIAGNOSTIC, 13, -7.670444085487e-01, 9.439645538541e-04, 7.3703e-01, 2.1379e-03, - 2DIAGNOSTIC, 14, -7.674709942641e-01, 9.580806534622e-04, 7.3921e-01, 2.1799e-03, - 2DIAGNOSTIC, 15, -7.676843363142e-01, 8.998339593248e-04, 7.4173e-01, 2.5151e-03, - 2DIAGNOSTIC, 16, -7.678587521711e-01, 7.872436971292e-04, 7.4390e-01, 2.1701e-03, - 2DIAGNOSTIC, 17, -7.679448306199e-01, 6.236682617761e-04, 7.4608e-01, 2.1861e-03, - 2DIAGNOSTIC, 18, -7.684841211826e-01, 4.512089525541e-04, 7.4859e-01, 2.5032e-03, - 2DIAGNOSTIC, 19, -7.699066374767e-01, 2.991990100221e-04, 7.5161e-01, 3.0251e-03, - 2DIAGNOSTIC, 20, -7.698057617683e-01, 1.687072647088e-04, 7.5406e-01, 2.4490e-03, - 2DIAGNOSTIC, 21, -7.696871611763e-01, 1.473692412512e-04, 7.5656e-01, 2.4929e-03, - 2DIAGNOSTIC, 22, -7.696453211184e-01, 1.213214928495e-04, 7.5879e-01, 2.2380e-03, - 2DIAGNOSTIC, 23, -7.698886288542e-01, 1.070304671482e-04, 7.6132e-01, 2.5270e-03, - 2DIAGNOSTIC, 24, -7.697953349698e-01, 8.863361221553e-05, 7.6409e-01, 2.7661e-03, - 2DIAGNOSTIC, 25, -7.700621150036e-01, 7.077640518112e-05, 7.7145e-01, 7.3600e-03, - 2DIAGNOSTIC, 26, -7.700620920734e-01, 5.062627954466e-05, 7.7351e-01, 2.0640e-03, - 2DIAGNOSTIC, 27, -7.700621218977e-01, 2.854465080622e-05, 7.7563e-01, 2.1200e-03, - 2DIAGNOSTIC, 28, -7.700621723328e-01, 1.206668972364e-05, 7.7775e-01, 2.1160e-03, - 2DIAGNOSTIC, 29, -7.700622575633e-01, 1.395594665212e-05, 7.7987e-01, 2.1260e-03, - 2DIAGNOSTIC, 30, -7.700624015029e-01, 1.328854364260e-05, 7.8203e-01, 2.1529e-03, - 2DIAGNOSTIC, 31, -7.700626457556e-01, 1.010783967692e-05, 7.8416e-01, 2.1319e-03, - 2DIAGNOSTIC, 32, -7.700630709125e-01, 5.742992645177e-06, 7.8628e-01, 2.1279e-03, - 2DIAGNOSTIC, 33, -7.700637861839e-01, 4.009121744794e-06, 7.8852e-01, 2.2318e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.308251027846e-01, 1.797693134862e+308, 1.0585e+00, 2.6995e-01, - 2DIAGNOSTIC, 2, -6.320769202036e-01, 1.797693134862e+308, 1.0709e+00, 1.2389e-02, - 2DIAGNOSTIC, 3, -6.336915469630e-01, 1.797693134862e+308, 1.0826e+00, 1.1739e-02, - 2DIAGNOSTIC, 4, -6.349723963065e-01, 1.797693134862e+308, 1.0944e+00, 1.1784e-02, - 2DIAGNOSTIC, 5, -6.352408731630e-01, 1.797693134862e+308, 1.1071e+00, 1.2687e-02, - 2DIAGNOSTIC, 6, -6.352969475976e-01, 1.797693134862e+308, 1.1189e+00, 1.1871e-02, - 2DIAGNOSTIC, 7, -6.353115552072e-01, 1.797693134862e+308, 1.1380e+00, 1.9077e-02, - 2DIAGNOSTIC, 8, -6.353774197054e-01, 1.797693134862e+308, 1.1495e+00, 1.1488e-02, - 2DIAGNOSTIC, 9, -6.353649792935e-01, 1.797693134862e+308, 1.1645e+00, 1.5034e-02, - 2DIAGNOSTIC, 10, -6.353531484006e-01, 3.952922378117e-04, 1.1780e+00, 1.3429e-02, - 2DIAGNOSTIC, 11, -6.353435141246e-01, 2.089563303734e-04, 1.1905e+00, 1.2540e-02, - 2DIAGNOSTIC, 12, -6.353944331046e-01, 8.285119334842e-05, 1.2023e+00, 1.1748e-02, - 2DIAGNOSTIC, 13, -6.354424167522e-01, 2.498812115341e-05, 1.2153e+00, 1.3030e-02, - 2DIAGNOSTIC, 14, -6.354605799737e-01, 1.466016722389e-05, 1.2270e+00, 1.1685e-02, - 2DIAGNOSTIC, 15, -6.354827491090e-01, 1.328091880214e-05, 1.2405e+00, 1.3503e-02, - 2DIAGNOSTIC, 16, -6.355499611521e-01, 1.451656862564e-05, 1.2556e+00, 1.5120e-02, - 2DIAGNOSTIC, 17, -6.355207615439e-01, 1.394837082468e-05, 1.2735e+00, 1.7902e-02, - 2DIAGNOSTIC, 18, -6.355207815045e-01, 1.399128018396e-05, 1.2850e+00, 1.1492e-02, - 2DIAGNOSTIC, 19, -6.355208844763e-01, 1.263535511675e-05, 1.2987e+00, 1.3713e-02, - 2DIAGNOSTIC, 20, -6.355209006810e-01, 1.014353377611e-05, 1.3127e+00, 1.4002e-02, - 2DIAGNOSTIC, 21, -6.355063804523e-01, 6.541762437300e-06, 1.3249e+00, 1.2183e-02, - 2DIAGNOSTIC, 22, -6.354918664997e-01, 3.536347506092e-06, 1.3369e+00, 1.1992e-02, - 2DIAGNOSTIC, 23, -6.354773742505e-01, 1.271975738404e-06, 1.3498e+00, 1.2954e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.400619495457e-01, 1.797693134862e+308, 1.8184e+00, 4.6858e-01, - 2DIAGNOSTIC, 2, -5.401742743000e-01, 1.797693134862e+308, 1.9169e+00, 9.8494e-02, - 2DIAGNOSTIC, 3, -5.403286551620e-01, 1.797693134862e+308, 2.0224e+00, 1.0549e-01, - 2DIAGNOSTIC, 4, -5.404574849338e-01, 1.797693134862e+308, 2.2058e+00, 1.8339e-01, - 2DIAGNOSTIC, 5, -5.404565670050e-01, 1.797693134862e+308, 2.3026e+00, 9.6800e-02, - 2DIAGNOSTIC, 6, -5.404758285669e-01, 1.797693134862e+308, 2.3941e+00, 9.1559e-02, - 2DIAGNOSTIC, 7, -5.404942086289e-01, 1.797693134862e+308, 2.4883e+00, 9.4109e-02, - 2DIAGNOSTIC, 8, -5.405221146517e-01, 1.797693134862e+308, 2.5720e+00, 8.3760e-02, - 2DIAGNOSTIC, 9, -5.405552663544e-01, 1.797693134862e+308, 2.6539e+00, 8.1868e-02, - 2DIAGNOSTIC, 10, -5.406058984669e-01, 5.750490482377e-05, 2.7363e+00, 8.2399e-02, - 2DIAGNOSTIC, 11, -5.406526841698e-01, 4.223290700064e-05, 2.8433e+00, 1.0697e-01, - 2DIAGNOSTIC, 12, -5.406854688402e-01, 3.218258020714e-05, 3.0518e+00, 2.0854e-01, - 2DIAGNOSTIC, 13, -5.406902397900e-01, 2.730466917729e-05, 3.1495e+00, 9.7719e-02, - 2DIAGNOSTIC, 14, -5.406852503710e-01, 2.554489119128e-05, 3.2855e+00, 1.3602e-01, - 2DIAGNOSTIC, 15, -5.406853816187e-01, 2.185733386198e-05, 3.3832e+00, 9.7664e-02, - 2DIAGNOSTIC, 16, -5.406826244100e-01, 1.733919977931e-05, 3.4801e+00, 9.6935e-02, - 2DIAGNOSTIC, 17, -5.406813842052e-01, 1.245977194594e-05, 3.5748e+00, 9.4661e-02, - 2DIAGNOSTIC, 18, -5.406801273719e-01, 7.930062919603e-06, 3.6718e+00, 9.7044e-02, - 2DIAGNOSTIC, 19, -5.406745372753e-01, 4.060356120078e-06, 3.7604e+00, 8.8598e-02, - 2DIAGNOSTIC, 20, -5.406748885260e-01, 1.677478303604e-06, 3.8670e+00, 1.0659e-01, - Elapsed time (stage 0): 4.0175e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.557073501622e-01, 1.797693134862e+308, 2.2918e-01, 2.2918e-01, - 2DIAGNOSTIC, 2, -8.581938594118e-01, 1.797693134862e+308, 2.3074e-01, 1.5550e-03, - 2DIAGNOSTIC, 3, -8.619096446972e-01, 1.797693134862e+308, 2.3213e-01, 1.3890e-03, - 2DIAGNOSTIC, 4, -8.670943735903e-01, 1.797693134862e+308, 2.3356e-01, 1.4331e-03, - 2DIAGNOSTIC, 5, -8.737619125527e-01, 1.797693134862e+308, 2.3493e-01, 1.3750e-03, - 2DIAGNOSTIC, 6, -8.820816851057e-01, 1.797693134862e+308, 2.3635e-01, 1.4160e-03, - 2DIAGNOSTIC, 7, -8.950748256176e-01, 1.797693134862e+308, 2.3775e-01, 1.4040e-03, - 2DIAGNOSTIC, 8, -9.231624767714e-01, 1.797693134862e+308, 2.3907e-01, 1.3208e-03, - 2DIAGNOSTIC, 9, -9.366704780355e-01, 1.797693134862e+308, 2.4079e-01, 1.7121e-03, - 2DIAGNOSTIC, 10, -9.537697051798e-01, 7.152414425488e-03, 2.4287e-01, 2.0869e-03, - 2DIAGNOSTIC, 11, -9.567996181249e-01, 7.289899597316e-03, 2.4475e-01, 1.8730e-03, - 2DIAGNOSTIC, 12, -9.651791192177e-01, 7.034523600692e-03, 2.4617e-01, 1.4231e-03, - 2DIAGNOSTIC, 13, -9.736413460446e-01, 6.467847780651e-03, 2.4770e-01, 1.5330e-03, - 2DIAGNOSTIC, 14, -9.780993533840e-01, 5.607669459670e-03, 2.4966e-01, 1.9548e-03, - 2DIAGNOSTIC, 15, -9.790576923527e-01, 4.520508335913e-03, 2.5146e-01, 1.8070e-03, - 2DIAGNOSTIC, 16, -9.792441997829e-01, 3.333086058726e-03, 2.5335e-01, 1.8840e-03, - 2DIAGNOSTIC, 17, -9.789093799907e-01, 2.208523741239e-03, 2.5493e-01, 1.5788e-03, - 2DIAGNOSTIC, 18, -9.780938125027e-01, 1.471893959355e-03, 2.5646e-01, 1.5340e-03, - 2DIAGNOSTIC, 19, -9.789767955559e-01, 9.058030514043e-04, 2.5833e-01, 1.8649e-03, - 2DIAGNOSTIC, 20, -9.800457322825e-01, 5.932965602966e-04, 2.6000e-01, 1.6761e-03, - 2DIAGNOSTIC, 21, -9.805525938454e-01, 3.066785597528e-04, 2.6161e-01, 1.6060e-03, - 2DIAGNOSTIC, 22, -9.813094255549e-01, 1.427421132986e-04, 2.6411e-01, 2.5020e-03, - 2DIAGNOSTIC, 23, -9.821601566441e-01, 1.017457715348e-04, 2.6597e-01, 1.8630e-03, - 2DIAGNOSTIC, 24, -9.823282654531e-01, 1.124809475866e-04, 2.6754e-01, 1.5662e-03, - 2DIAGNOSTIC, 25, -9.816540881288e-01, 1.149981990973e-04, 2.6980e-01, 2.2640e-03, - 2DIAGNOSTIC, 26, -9.811192896380e-01, 1.030022494956e-04, 2.7127e-01, 1.4710e-03, - 2DIAGNOSTIC, 27, -9.805964327120e-01, 7.329679999674e-05, 2.7290e-01, 1.6260e-03, - 2DIAGNOSTIC, 28, -9.815425798283e-01, 4.013605271181e-05, 2.7447e-01, 1.5719e-03, - 2DIAGNOSTIC, 29, -9.819142915581e-01, 1.804388168353e-05, 2.7609e-01, 1.6210e-03, - 2DIAGNOSTIC, 30, -9.845054776885e-01, 3.254661639425e-05, 2.7793e-01, 1.8339e-03, - 2DIAGNOSTIC, 31, -9.864543734149e-01, 6.631835873597e-05, 2.7953e-01, 1.6060e-03, - 2DIAGNOSTIC, 32, -9.864426053311e-01, 9.826457696544e-05, 2.8133e-01, 1.7989e-03, - 2DIAGNOSTIC, 33, -9.871413806322e-01, 1.332623953828e-04, 2.8278e-01, 1.4460e-03, - 2DIAGNOSTIC, 34, -9.895985964549e-01, 1.765543573974e-04, 2.8553e-01, 2.7499e-03, - 2DIAGNOSTIC, 35, -9.890065955179e-01, 1.890832633999e-04, 2.8703e-01, 1.5039e-03, - 2DIAGNOSTIC, 36, -9.898260413243e-01, 1.857596654518e-04, 2.8866e-01, 1.6332e-03, - 2DIAGNOSTIC, 37, -9.900569126376e-01, 1.628563231957e-04, 2.9029e-01, 1.6289e-03, - 2DIAGNOSTIC, 38, -9.903264377747e-01, 1.354786729937e-04, 2.9193e-01, 1.6332e-03, - 2DIAGNOSTIC, 39, -9.906085357974e-01, 1.010629911656e-04, 2.9439e-01, 2.4629e-03, - 2DIAGNOSTIC, 40, -9.907698774812e-01, 7.891028900646e-05, 2.9589e-01, 1.5030e-03, - 2DIAGNOSTIC, 41, -9.908495375348e-01, 6.536249923725e-05, 2.9734e-01, 1.4501e-03, - 2DIAGNOSTIC, 42, -9.909637962787e-01, 4.701522522725e-05, 2.9903e-01, 1.6870e-03, - 2DIAGNOSTIC, 43, -9.910767550049e-01, 3.023064749949e-05, 3.0122e-01, 2.1949e-03, - 2DIAGNOSTIC, 44, -9.911613626780e-01, 2.864342129558e-05, 3.0320e-01, 1.9729e-03, - 2DIAGNOSTIC, 45, -9.912433300621e-01, 2.098739876776e-05, 3.0500e-01, 1.8051e-03, - 2DIAGNOSTIC, 46, -9.908967119262e-01, 1.476548128337e-05, 3.0703e-01, 2.0280e-03, - 2DIAGNOSTIC, 47, -9.905669485625e-01, 6.900581289448e-06, 3.0896e-01, 1.9250e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.718881013328e-01, 1.797693134862e+308, 5.3766e-01, 2.2870e-01, - 2DIAGNOSTIC, 2, -8.747709091729e-01, 1.797693134862e+308, 5.4093e-01, 3.2771e-03, - 2DIAGNOSTIC, 3, -8.768274485495e-01, 1.797693134862e+308, 5.4394e-01, 3.0119e-03, - 2DIAGNOSTIC, 4, -8.799748529071e-01, 1.797693134862e+308, 5.4668e-01, 2.7380e-03, - 2DIAGNOSTIC, 5, -8.830094543717e-01, 1.797693134862e+308, 5.4945e-01, 2.7721e-03, - 2DIAGNOSTIC, 6, -8.848687053078e-01, 1.797693134862e+308, 5.5216e-01, 2.7058e-03, - 2DIAGNOSTIC, 7, -8.881107911635e-01, 1.797693134862e+308, 5.5517e-01, 3.0081e-03, - 2DIAGNOSTIC, 8, -8.892288038511e-01, 1.797693134862e+308, 5.5865e-01, 3.4828e-03, - 2DIAGNOSTIC, 9, -8.933933069530e-01, 1.797693134862e+308, 5.6138e-01, 2.7289e-03, - 2DIAGNOSTIC, 10, -8.947727184818e-01, 1.674491606085e-03, 5.6459e-01, 3.2051e-03, - 2DIAGNOSTIC, 11, -8.945072829823e-01, 1.412778935926e-03, 5.6739e-01, 2.8081e-03, - 2DIAGNOSTIC, 12, -8.945638077690e-01, 1.148907442553e-03, 5.7018e-01, 2.7859e-03, - 2DIAGNOSTIC, 13, -8.945332012603e-01, 8.712912644029e-04, 5.7255e-01, 2.3680e-03, - 2DIAGNOSTIC, 14, -8.944566763738e-01, 6.229696128253e-04, 5.7492e-01, 2.3749e-03, - 2DIAGNOSTIC, 15, -8.946374913295e-01, 4.193842737779e-04, 5.7729e-01, 2.3701e-03, - 2DIAGNOSTIC, 16, -8.949977972062e-01, 2.472241137716e-04, 5.7963e-01, 2.3339e-03, - 2DIAGNOSTIC, 17, -8.951352998526e-01, 1.371109368547e-04, 5.8325e-01, 3.6199e-03, - 2DIAGNOSTIC, 18, -8.951693229627e-01, 4.547237480938e-05, 5.8555e-01, 2.3050e-03, - 2DIAGNOSTIC, 19, -8.950269891060e-01, 2.660055526663e-05, 5.8794e-01, 2.3870e-03, - 2DIAGNOSTIC, 20, -8.951044629036e-01, 3.076141734863e-05, 5.9100e-01, 3.0589e-03, - 2DIAGNOSTIC, 21, -8.951246104335e-01, 2.786455532746e-05, 5.9337e-01, 2.3730e-03, - 2DIAGNOSTIC, 22, -8.949674490837e-01, 2.127156323795e-05, 5.9614e-01, 2.7680e-03, - 2DIAGNOSTIC, 23, -8.948791047574e-01, 1.196791649907e-05, 5.9929e-01, 3.1550e-03, - 2DIAGNOSTIC, 24, -8.950960475807e-01, 4.377935856351e-06, 6.0212e-01, 2.8310e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.509517524432e-01, 1.797693134862e+308, 8.5718e-01, 2.5506e-01, - 2DIAGNOSTIC, 2, -7.518800613006e-01, 1.797693134862e+308, 8.7034e-01, 1.3154e-02, - 2DIAGNOSTIC, 3, -7.530966066889e-01, 1.797693134862e+308, 8.8297e-01, 1.2633e-02, - 2DIAGNOSTIC, 4, -7.541424731693e-01, 1.797693134862e+308, 8.9529e-01, 1.2318e-02, - 2DIAGNOSTIC, 5, -7.548174148185e-01, 1.797693134862e+308, 9.0886e-01, 1.3572e-02, - 2DIAGNOSTIC, 6, -7.552634375617e-01, 1.797693134862e+308, 9.3043e-01, 2.1570e-02, - 2DIAGNOSTIC, 7, -7.554340148315e-01, 1.797693134862e+308, 9.4985e-01, 1.9423e-02, - 2DIAGNOSTIC, 8, -7.554215962940e-01, 1.797693134862e+308, 9.6559e-01, 1.5739e-02, - 2DIAGNOSTIC, 9, -7.554000830957e-01, 1.797693134862e+308, 9.7982e-01, 1.4226e-02, - 2DIAGNOSTIC, 10, -7.553687362524e-01, 3.725363497275e-04, 9.9403e-01, 1.4213e-02, - 2DIAGNOSTIC, 11, -7.553752040593e-01, 2.314808415152e-04, 1.0126e+00, 1.8601e-02, - 2DIAGNOSTIC, 12, -7.553691092378e-01, 1.219019550708e-04, 1.0295e+00, 1.6906e-02, - 2DIAGNOSTIC, 13, -7.553775601141e-01, 5.349327346313e-05, 1.0474e+00, 1.7845e-02, - 2DIAGNOSTIC, 14, -7.553446893873e-01, 1.719515715477e-05, 1.0652e+00, 1.7819e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.291774314153e-01, 1.797693134862e+308, 1.5285e+00, 4.6332e-01, - 2DIAGNOSTIC, 2, -6.302633833371e-01, 1.797693134862e+308, 1.6304e+00, 1.0184e-01, - 2DIAGNOSTIC, 3, -6.314326100418e-01, 1.797693134862e+308, 1.7335e+00, 1.0314e-01, - 2DIAGNOSTIC, 4, -6.322511716724e-01, 1.797693134862e+308, 1.8385e+00, 1.0499e-01, - 2DIAGNOSTIC, 5, -6.326935127525e-01, 1.797693134862e+308, 1.9390e+00, 1.0050e-01, - 2DIAGNOSTIC, 6, -6.330529760069e-01, 1.797693134862e+308, 2.0416e+00, 1.0263e-01, - 2DIAGNOSTIC, 7, -6.335313336723e-01, 1.797693134862e+308, 2.1894e+00, 1.4779e-01, - 2DIAGNOSTIC, 8, -6.335622920356e-01, 1.797693134862e+308, 2.3859e+00, 1.9650e-01, - 2DIAGNOSTIC, 9, -6.335620252871e-01, 1.797693134862e+308, 2.4962e+00, 1.1026e-01, - 2DIAGNOSTIC, 10, -6.335562451162e-01, 4.262696120259e-04, 2.6162e+00, 1.2005e-01, - 2DIAGNOSTIC, 11, -6.335521525671e-01, 2.704493883877e-04, 2.7516e+00, 1.3534e-01, - 2DIAGNOSTIC, 12, -6.335456449500e-01, 1.561035434597e-04, 2.8590e+00, 1.0746e-01, - 2DIAGNOSTIC, 13, -6.335431539865e-01, 8.534166839842e-05, 2.9834e+00, 1.2435e-01, - 2DIAGNOSTIC, 14, -6.335405071894e-01, 4.333271373917e-05, 3.1165e+00, 1.3314e-01, - 2DIAGNOSTIC, 15, -6.335372892595e-01, 1.621492341541e-05, 3.2407e+00, 1.2421e-01, - Elapsed time (stage 1): 3.3743e+00 - - -Total elapsed time: 7.3959e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:46:27 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 08:46:28 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5600f4edc4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.051, 60.8682, -115.329] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f4ee1fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5cf48b5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5600f4edd850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.051, 60.8682, -115.329] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f4edaf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5cf11f6010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5600f4ef4b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.051, 60.8682, -115.329] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f4ee1550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5cedb37010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5600f4ef9d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.051, 60.8682, -115.329] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f4ef7c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5cea478010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x5600f4efbf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.051, 60.8682, -115.329] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f4efa3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5ce6db9010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5600f4efc540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.051, 60.8682, -115.329] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5600f4efc4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5ce36fa010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.317117729526e-01, 1.797693134862e+308, 2.2043e-01, 2.2043e-01, - 2DIAGNOSTIC, 2, -7.346864317874e-01, 1.797693134862e+308, 2.2288e-01, 2.4450e-03, - 2DIAGNOSTIC, 3, -7.383394246953e-01, 1.797693134862e+308, 2.2543e-01, 2.5492e-03, - 2DIAGNOSTIC, 4, -7.432735160290e-01, 1.797693134862e+308, 2.2839e-01, 2.9659e-03, - 2DIAGNOSTIC, 5, -7.490994606727e-01, 1.797693134862e+308, 2.3112e-01, 2.7239e-03, - 2DIAGNOSTIC, 6, -7.521109704623e-01, 1.797693134862e+308, 2.3409e-01, 2.9681e-03, - 2DIAGNOSTIC, 7, -7.520482786294e-01, 1.797693134862e+308, 2.3667e-01, 2.5849e-03, - 2DIAGNOSTIC, 8, -7.520292672588e-01, 1.797693134862e+308, 2.3876e-01, 2.0940e-03, - 2DIAGNOSTIC, 9, -7.520109898060e-01, 1.797693134862e+308, 2.4080e-01, 2.0401e-03, - 2DIAGNOSTIC, 10, -7.521934549210e-01, 1.901952804502e-03, 2.4367e-01, 2.8641e-03, - 2DIAGNOSTIC, 11, -7.528134353406e-01, 1.308700643555e-03, 2.4764e-01, 3.9680e-03, - 2DIAGNOSTIC, 12, -7.528177362151e-01, 7.933163076378e-04, 2.4985e-01, 2.2159e-03, - 2DIAGNOSTIC, 13, -7.528286020429e-01, 3.933007630884e-04, 2.5201e-01, 2.1570e-03, - 2DIAGNOSTIC, 14, -7.528399914899e-01, 1.462785276934e-04, 2.5486e-01, 2.8510e-03, - 2DIAGNOSTIC, 15, -7.528498376846e-01, 6.471116632299e-05, 2.5774e-01, 2.8832e-03, - 2DIAGNOSTIC, 16, -7.528547920928e-01, 5.902487953224e-05, 2.6061e-01, 2.8701e-03, - 2DIAGNOSTIC, 17, -7.528609895044e-01, 4.752450169847e-05, 2.6350e-01, 2.8870e-03, - 2DIAGNOSTIC, 18, -7.528696195471e-01, 3.314101279521e-05, 2.6572e-01, 2.2242e-03, - 2DIAGNOSTIC, 19, -7.530483311968e-01, 2.061567708843e-05, 2.6783e-01, 2.1019e-03, - 2DIAGNOSTIC, 20, -7.532134826149e-01, 1.375215760709e-05, 2.7055e-01, 2.7230e-03, - 2DIAGNOSTIC, 21, -7.532154567916e-01, 1.760119792619e-05, 2.7271e-01, 2.1560e-03, - 2DIAGNOSTIC, 22, -7.530723512563e-01, 1.728663513127e-05, 2.7526e-01, 2.5539e-03, - 2DIAGNOSTIC, 23, -7.529448438008e-01, 1.369252595354e-05, 2.7749e-01, 2.2261e-03, - 2DIAGNOSTIC, 24, -7.529404805734e-01, 9.327974355794e-06, 2.8463e-01, 7.1421e-03, - 2DIAGNOSTIC, 25, -7.529404325752e-01, 4.603464575599e-06, 2.8685e-01, 2.2249e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.349416228085e-01, 1.797693134862e+308, 5.3224e-01, 2.4539e-01, - 2DIAGNOSTIC, 2, -6.359518667397e-01, 1.797693134862e+308, 5.4760e-01, 1.5359e-02, - 2DIAGNOSTIC, 3, -6.372440513482e-01, 1.797693134862e+308, 5.6316e-01, 1.5552e-02, - 2DIAGNOSTIC, 4, -6.384270685655e-01, 1.797693134862e+308, 5.7896e-01, 1.5806e-02, - 2DIAGNOSTIC, 5, -6.388759757589e-01, 1.797693134862e+308, 5.9451e-01, 1.5551e-02, - 2DIAGNOSTIC, 6, -6.389344195007e-01, 1.797693134862e+308, 6.0795e-01, 1.3436e-02, - 2DIAGNOSTIC, 7, -6.397624906319e-01, 1.797693134862e+308, 6.2287e-01, 1.4924e-02, - 2DIAGNOSTIC, 8, -6.402240412867e-01, 1.797693134862e+308, 6.6914e-01, 4.6272e-02, - 2DIAGNOSTIC, 9, -6.402239829789e-01, 1.797693134862e+308, 6.8276e-01, 1.3612e-02, - 2DIAGNOSTIC, 10, -6.402240673386e-01, 5.257706189261e-04, 6.9698e-01, 1.4228e-02, - 2DIAGNOSTIC, 11, -6.402242099669e-01, 3.630999062521e-04, 7.1114e-01, 1.4156e-02, - 2DIAGNOSTIC, 12, -6.402244507744e-01, 2.316144891141e-04, 7.2509e-01, 1.3946e-02, - 2DIAGNOSTIC, 13, -6.402248568479e-01, 1.426465924284e-04, 7.3891e-01, 1.3828e-02, - 2DIAGNOSTIC, 14, -6.402255404895e-01, 9.127544519012e-05, 7.5299e-01, 1.4072e-02, - 2DIAGNOSTIC, 15, -6.402266953241e-01, 5.245515759825e-05, 7.6627e-01, 1.3281e-02, - 2DIAGNOSTIC, 16, -6.402286418063e-01, 1.505318705261e-05, 7.8048e-01, 1.4209e-02, - 2DIAGNOSTIC, 17, -6.402318883664e-01, 2.252118957262e-06, 7.9392e-01, 1.3443e-02, - 2DIAGNOSTIC, 18, -6.402372524808e-01, 2.371928655411e-06, 8.0756e-01, 1.3640e-02, - 2DIAGNOSTIC, 19, -6.402460220214e-01, 2.624875667163e-06, 8.2287e-01, 1.5311e-02, - 2DIAGNOSTIC, 20, -6.402521754192e-01, 2.899525858385e-06, 8.3555e-01, 1.2677e-02, - 2DIAGNOSTIC, 21, -6.402473331320e-01, 2.926291754295e-06, 8.4817e-01, 1.2628e-02, - 2DIAGNOSTIC, 22, -6.402629415403e-01, 3.145042244843e-06, 8.6269e-01, 1.4511e-02, - 2DIAGNOSTIC, 23, -6.402529650484e-01, 2.991095881949e-06, 8.7698e-01, 1.4295e-02, - 2DIAGNOSTIC, 24, -6.402403041359e-01, 2.482205663228e-06, 8.9267e-01, 1.5689e-02, - 2DIAGNOSTIC, 25, -6.402167470576e-01, 1.515366367291e-06, 9.0643e-01, 1.3756e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.313015327737e-01, 1.797693134862e+308, 1.3179e+00, 4.1144e-01, - 2DIAGNOSTIC, 2, -5.323076148711e-01, 1.797693134862e+308, 1.4136e+00, 9.5704e-02, - 2DIAGNOSTIC, 3, -5.333997907667e-01, 1.797693134862e+308, 1.5095e+00, 9.5931e-02, - 2DIAGNOSTIC, 4, -5.341469951035e-01, 1.797693134862e+308, 1.6022e+00, 9.2677e-02, - 2DIAGNOSTIC, 5, -5.343887552736e-01, 1.797693134862e+308, 1.7095e+00, 1.0728e-01, - 2DIAGNOSTIC, 6, -5.344020764860e-01, 1.797693134862e+308, 1.7951e+00, 8.5635e-02, - 2DIAGNOSTIC, 7, -5.344071171348e-01, 1.797693134862e+308, 1.9019e+00, 1.0679e-01, - 2DIAGNOSTIC, 8, -5.344109992532e-01, 1.797693134862e+308, 2.0076e+00, 1.0574e-01, - 2DIAGNOSTIC, 9, -5.344210117649e-01, 1.797693134862e+308, 2.1262e+00, 1.1857e-01, - 2DIAGNOSTIC, 10, -5.344185744563e-01, 3.118498769111e-04, 2.2324e+00, 1.0617e-01, - 2DIAGNOSTIC, 11, -5.344157298997e-01, 1.578591259299e-04, 2.3636e+00, 1.3124e-01, - 2DIAGNOSTIC, 12, -5.344159284252e-01, 5.949616963513e-05, 2.4740e+00, 1.1042e-01, - 2DIAGNOSTIC, 13, -5.344154620066e-01, 1.509355756549e-05, 2.6080e+00, 1.3393e-01, - 2DIAGNOSTIC, 14, -5.344155093854e-01, 4.039762436889e-06, 2.7209e+00, 1.1290e-01, - 2DIAGNOSTIC, 15, -5.344143697216e-01, 2.829074724903e-06, 2.8287e+00, 1.0786e-01, - 2DIAGNOSTIC, 16, -5.344135454607e-01, 2.125644282189e-06, 2.9345e+00, 1.0578e-01, - 2DIAGNOSTIC, 17, -5.344119572067e-01, 1.600259315206e-06, 3.0414e+00, 1.0693e-01, - 2DIAGNOSTIC, 18, -5.344102034204e-01, 1.211342328757e-06, 3.1336e+00, 9.2120e-02, - 2DIAGNOSTIC, 19, -5.344122041293e-01, 1.253206417022e-06, 3.2535e+00, 1.1998e-01, - 2DIAGNOSTIC, 20, -5.344129987091e-01, 1.286239991384e-06, 3.3597e+00, 1.0618e-01, - 2DIAGNOSTIC, 21, -5.344120402984e-01, 1.247850790517e-06, 3.4646e+00, 1.0492e-01, - 2DIAGNOSTIC, 22, -5.344098264094e-01, 1.191666137289e-06, 3.5535e+00, 8.8870e-02, - 2DIAGNOSTIC, 23, -5.344095839136e-01, 1.149315459949e-06, 3.6323e+00, 7.8790e-02, - 2DIAGNOSTIC, 24, -5.344101812100e-01, 1.145242973184e-06, 3.7520e+00, 1.1970e-01, - 2DIAGNOSTIC, 25, -5.344092199575e-01, 1.111688810354e-06, 3.8596e+00, 1.0765e-01, - 2DIAGNOSTIC, 26, -5.344098258901e-01, 1.093657466443e-06, 3.9648e+00, 1.0519e-01, - 2DIAGNOSTIC, 27, -5.344090742497e-01, 1.045301935440e-06, 4.0594e+00, 9.4588e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.646828112833e-01, 1.797693134862e+308, 5.2868e+00, 1.2273e+00, - 2DIAGNOSTIC, 2, -4.648157117095e-01, 1.797693134862e+308, 5.8391e+00, 5.5232e-01, - 2DIAGNOSTIC, 3, -4.648987390979e-01, 1.797693134862e+308, 6.3708e+00, 5.3169e-01, - 2DIAGNOSTIC, 4, -4.649779767191e-01, 1.797693134862e+308, 7.4112e+00, 1.0404e+00, - 2DIAGNOSTIC, 5, -4.649752657187e-01, 1.797693134862e+308, 8.0581e+00, 6.4692e-01, - 2DIAGNOSTIC, 6, -4.649745983780e-01, 1.797693134862e+308, 8.7104e+00, 6.5228e-01, - 2DIAGNOSTIC, 7, -4.649735095777e-01, 1.797693134862e+308, 9.5701e+00, 8.5970e-01, - 2DIAGNOSTIC, 8, -4.649737083439e-01, 1.797693134862e+308, 1.0392e+01, 8.2168e-01, - 2DIAGNOSTIC, 9, -4.649736577841e-01, 1.797693134862e+308, 1.0900e+01, 5.0805e-01, - 2DIAGNOSTIC, 10, -4.649732091625e-01, 3.245205000391e-05, 1.1509e+01, 6.0893e-01, - 2DIAGNOSTIC, 11, -4.649730107700e-01, 1.502972825075e-05, 1.2063e+01, 5.5451e-01, - 2DIAGNOSTIC, 12, -4.649727350040e-01, 6.105293639147e-06, 1.2752e+01, 6.8877e-01, - 2DIAGNOSTIC, 13, -4.649726842025e-01, 2.034895924069e-06, 1.3368e+01, 6.1643e-01, - 2DIAGNOSTIC, 14, -4.649723647271e-01, 2.031437563693e-06, 1.3912e+01, 5.4386e-01, - 2DIAGNOSTIC, 15, -4.649723086001e-01, 1.938551741687e-06, 1.4527e+01, 6.1455e-01, - 2DIAGNOSTIC, 16, -4.649720275864e-01, 1.839127470260e-06, 1.5132e+01, 6.0479e-01, - 2DIAGNOSTIC, 17, -4.649719569178e-01, 1.723226296615e-06, 1.5662e+01, 5.3077e-01, - 2DIAGNOSTIC, 18, -4.649716315521e-01, 1.629366748412e-06, 1.6292e+01, 6.2945e-01, - 2DIAGNOSTIC, 19, -4.649713339765e-01, 1.547474889216e-06, 1.6913e+01, 6.2161e-01, - 2DIAGNOSTIC, 20, -4.649713830409e-01, 1.473595781211e-06, 1.7618e+01, 7.0462e-01, - 2DIAGNOSTIC, 21, -4.649713082302e-01, 1.409611686147e-06, 1.8232e+01, 6.1383e-01, - 2DIAGNOSTIC, 22, -4.649712335584e-01, 1.351477877359e-06, 1.8754e+01, 5.2175e-01, - 2DIAGNOSTIC, 23, -4.649712156733e-01, 1.305755699191e-06, 1.9298e+01, 5.4404e-01, - 2DIAGNOSTIC, 24, -4.649712938924e-01, 1.264988219223e-06, 1.9895e+01, 5.9763e-01, - 2DIAGNOSTIC, 25, -4.649715728368e-01, 1.238580265496e-06, 2.0502e+01, 6.0680e-01, - 2DIAGNOSTIC, 26, -4.649715915922e-01, 1.210924554997e-06, 2.1187e+01, 6.8458e-01, - 2DIAGNOSTIC, 27, -4.649715673429e-01, 1.184631229598e-06, 2.1800e+01, 6.1318e-01, - 2DIAGNOSTIC, 28, -4.649715684207e-01, 1.152827344655e-06, 2.2346e+01, 5.4587e-01, - 2DIAGNOSTIC, 29, -4.649713632798e-01, 1.110918877070e-06, 2.3091e+01, 7.4543e-01, - 2DIAGNOSTIC, 30, -4.649714525930e-01, 1.073329357254e-06, 2.3745e+01, 6.5354e-01, - 2DIAGNOSTIC, 31, -4.649713611692e-01, 1.033599650840e-06, 2.4294e+01, 5.4942e-01, - Elapsed time (stage 0): 2.4650e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.388660993617e-01, 1.797693134862e+308, 1.7755e-01, 1.7755e-01, - 2DIAGNOSTIC, 2, -7.413120787278e-01, 1.797693134862e+308, 1.7980e-01, 2.2511e-03, - 2DIAGNOSTIC, 3, -7.446662562352e-01, 1.797693134862e+308, 1.8195e-01, 2.1520e-03, - 2DIAGNOSTIC, 4, -7.502148458805e-01, 1.797693134862e+308, 1.8410e-01, 2.1532e-03, - 2DIAGNOSTIC, 5, -7.550644936170e-01, 1.797693134862e+308, 1.8624e-01, 2.1331e-03, - 2DIAGNOSTIC, 6, -7.579390419359e-01, 1.797693134862e+308, 1.8811e-01, 1.8771e-03, - 2DIAGNOSTIC, 7, -7.593430139429e-01, 1.797693134862e+308, 1.9016e-01, 2.0421e-03, - 2DIAGNOSTIC, 8, -7.596549256470e-01, 1.797693134862e+308, 1.9280e-01, 2.6491e-03, - 2DIAGNOSTIC, 9, -7.596256564109e-01, 1.797693134862e+308, 1.9494e-01, 2.1341e-03, - 2DIAGNOSTIC, 10, -7.596563946985e-01, 1.968682233899e-03, 1.9702e-01, 2.0800e-03, - 2DIAGNOSTIC, 11, -7.595448482502e-01, 1.385579782546e-03, 1.9911e-01, 2.0940e-03, - 2DIAGNOSTIC, 12, -7.594649489983e-01, 8.514065719135e-04, 2.0111e-01, 1.9970e-03, - 2DIAGNOSTIC, 13, -7.596180366640e-01, 4.232354798553e-04, 2.0338e-01, 2.2750e-03, - 2DIAGNOSTIC, 14, -7.598072964173e-01, 1.703890136846e-04, 2.0650e-01, 3.1171e-03, - 2DIAGNOSTIC, 15, -7.598372892621e-01, 5.695621033890e-05, 2.0900e-01, 2.4960e-03, - 2DIAGNOSTIC, 16, -7.598536426167e-01, 2.002394296247e-05, 2.1205e-01, 3.0499e-03, - 2DIAGNOSTIC, 17, -7.595817215774e-01, 1.075001088484e-05, 2.1522e-01, 3.1769e-03, - 2DIAGNOSTIC, 18, -7.600191200568e-01, 1.744801539390e-05, 2.1885e-01, 3.6211e-03, - 2DIAGNOSTIC, 19, -7.600403472014e-01, 2.137263729605e-05, 2.2135e-01, 2.5060e-03, - 2DIAGNOSTIC, 20, -7.602144913108e-01, 2.699249941809e-05, 2.2417e-01, 2.8179e-03, - 2DIAGNOSTIC, 21, -7.603315394916e-01, 2.999120559965e-05, 2.2641e-01, 2.2411e-03, - 2DIAGNOSTIC, 22, -7.607312165000e-01, 3.552349463647e-05, 2.2927e-01, 2.8629e-03, - 2DIAGNOSTIC, 23, -7.614196445057e-01, 5.082252949389e-05, 2.3300e-01, 3.7301e-03, - 2DIAGNOSTIC, 24, -7.614869027058e-01, 6.389497344687e-05, 2.3575e-01, 2.7461e-03, - 2DIAGNOSTIC, 25, -7.615600265393e-01, 7.178251769688e-05, 2.3879e-01, 3.0441e-03, - 2DIAGNOSTIC, 26, -7.616068346717e-01, 7.361928335631e-05, 2.4120e-01, 2.4099e-03, - 2DIAGNOSTIC, 27, -7.614997237428e-01, 6.297738348925e-05, 2.4430e-01, 3.0980e-03, - 2DIAGNOSTIC, 28, -7.613746967399e-01, 5.138840312357e-05, 2.4688e-01, 2.5749e-03, - 2DIAGNOSTIC, 29, -7.612333144905e-01, 3.432986710208e-05, 2.4909e-01, 2.2151e-03, - 2DIAGNOSTIC, 30, -7.610925988688e-01, 1.583799792214e-05, 2.5160e-01, 2.5079e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.355303436354e-01, 1.797693134862e+308, 4.5192e-01, 2.0032e-01, - 2DIAGNOSTIC, 2, -6.370041369222e-01, 1.797693134862e+308, 4.6577e-01, 1.3847e-02, - 2DIAGNOSTIC, 3, -6.385181485376e-01, 1.797693134862e+308, 4.7948e-01, 1.3712e-02, - 2DIAGNOSTIC, 4, -6.399572733701e-01, 1.797693134862e+308, 4.9383e-01, 1.4352e-02, - 2DIAGNOSTIC, 5, -6.406772535023e-01, 1.797693134862e+308, 5.0786e-01, 1.4031e-02, - 2DIAGNOSTIC, 6, -6.410567222388e-01, 1.797693134862e+308, 5.3004e-01, 2.2176e-02, - 2DIAGNOSTIC, 7, -6.410910521878e-01, 1.797693134862e+308, 5.4201e-01, 1.1977e-02, - 2DIAGNOSTIC, 8, -6.411720826912e-01, 1.797693134862e+308, 5.5546e-01, 1.3448e-02, - 2DIAGNOSTIC, 9, -6.412686977649e-01, 1.797693134862e+308, 5.6885e-01, 1.3385e-02, - 2DIAGNOSTIC, 10, -6.413002129008e-01, 5.340930035308e-04, 5.8078e-01, 1.1929e-02, - 2DIAGNOSTIC, 11, -6.413217973483e-01, 3.220957904878e-04, 5.9271e-01, 1.1936e-02, - 2DIAGNOSTIC, 12, -6.414001424901e-01, 1.737577769182e-04, 6.0626e-01, 1.3551e-02, - 2DIAGNOSTIC, 13, -6.417437886730e-01, 9.526456546524e-05, 6.1980e-01, 1.3536e-02, - 2DIAGNOSTIC, 14, -6.419317831482e-01, 7.034304675611e-05, 6.3740e-01, 1.7600e-02, - 2DIAGNOSTIC, 15, -6.420523480906e-01, 6.710932460266e-05, 6.5980e-01, 2.2403e-02, - 2DIAGNOSTIC, 16, -6.420212516417e-01, 6.812873023890e-05, 6.7168e-01, 1.1877e-02, - 2DIAGNOSTIC, 17, -6.420238727915e-01, 6.395838512495e-05, 6.8521e-01, 1.3530e-02, - 2DIAGNOSTIC, 18, -6.420377946504e-01, 5.667739591479e-05, 6.9724e-01, 1.2027e-02, - 2DIAGNOSTIC, 19, -6.420241972919e-01, 4.689470407009e-05, 7.1476e-01, 1.7527e-02, - 2DIAGNOSTIC, 20, -6.420146220257e-01, 3.446399487284e-05, 7.2857e-01, 1.3805e-02, - 2DIAGNOSTIC, 21, -6.419789995741e-01, 1.997428248831e-05, 7.4243e-01, 1.3861e-02, - 2DIAGNOSTIC, 22, -6.419783566585e-01, 6.547879006620e-06, 7.5630e-01, 1.3873e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.323994423424e-01, 1.797693134862e+308, 1.1362e+00, 3.7994e-01, - 2DIAGNOSTIC, 2, -5.330661292750e-01, 1.797693134862e+308, 1.2396e+00, 1.0337e-01, - 2DIAGNOSTIC, 3, -5.338158414652e-01, 1.797693134862e+308, 1.3448e+00, 1.0521e-01, - 2DIAGNOSTIC, 4, -5.344504512891e-01, 1.797693134862e+308, 1.4440e+00, 9.9201e-02, - 2DIAGNOSTIC, 5, -5.349124597693e-01, 1.797693134862e+308, 1.5426e+00, 9.8542e-02, - 2DIAGNOSTIC, 6, -5.354873304498e-01, 1.797693134862e+308, 1.6602e+00, 1.1765e-01, - 2DIAGNOSTIC, 7, -5.364148034028e-01, 1.797693134862e+308, 1.8000e+00, 1.3979e-01, - 2DIAGNOSTIC, 8, -5.364890590536e-01, 1.797693134862e+308, 1.9001e+00, 1.0009e-01, - 2DIAGNOSTIC, 9, -5.365635628400e-01, 1.797693134862e+308, 2.0163e+00, 1.1623e-01, - 2DIAGNOSTIC, 10, -5.366723404137e-01, 5.459254737992e-04, 2.2045e+00, 1.8820e-01, - 2DIAGNOSTIC, 11, -5.366750225749e-01, 4.121600730980e-04, 2.3124e+00, 1.0788e-01, - 2DIAGNOSTIC, 12, -5.366867468905e-01, 2.931031011716e-04, 2.4126e+00, 1.0018e-01, - 2DIAGNOSTIC, 13, -5.366981160949e-01, 1.969859224689e-04, 2.5143e+00, 1.0173e-01, - 2DIAGNOSTIC, 14, -5.367078630577e-01, 1.216464452736e-04, 2.6151e+00, 1.0076e-01, - 2DIAGNOSTIC, 15, -5.367166767371e-01, 6.191526264231e-05, 2.7155e+00, 1.0044e-01, - 2DIAGNOSTIC, 16, -5.367407767466e-01, 2.321889347097e-05, 2.8211e+00, 1.0558e-01, - 2DIAGNOSTIC, 17, -5.367448679459e-01, 1.619707123700e-05, 2.9036e+00, 8.2457e-02, - 2DIAGNOSTIC, 18, -5.367465370861e-01, 1.084968335063e-05, 2.9865e+00, 8.2932e-02, - 2DIAGNOSTIC, 19, -5.367528027693e-01, 7.403108210000e-06, 3.1070e+00, 1.2054e-01, - 2DIAGNOSTIC, 20, -5.367550831777e-01, 6.711640947260e-06, 3.2232e+00, 1.1614e-01, - 2DIAGNOSTIC, 21, -5.367555871609e-01, 5.678240082033e-06, 3.3258e+00, 1.0266e-01, - 2DIAGNOSTIC, 22, -5.367573928331e-01, 4.673772784555e-06, 3.4260e+00, 1.0014e-01, - 2DIAGNOSTIC, 23, -5.367592203613e-01, 3.762558343133e-06, 3.5680e+00, 1.4202e-01, - 2DIAGNOSTIC, 24, -5.367595101503e-01, 2.925418441289e-06, 3.9179e+00, 3.4990e-01, - 2DIAGNOSTIC, 25, -5.367595101329e-01, 2.178714732425e-06, 4.2669e+00, 3.4899e-01, - 2DIAGNOSTIC, 26, -5.367595101329e-01, 1.896159326290e-06, 4.3952e+00, 1.2838e-01, - 2DIAGNOSTIC, 27, -5.367595101329e-01, 1.652271828120e-06, 4.5082e+00, 1.1297e-01, - 2DIAGNOSTIC, 28, -5.367595101329e-01, 1.409385433311e-06, 4.6229e+00, 1.1467e-01, - 2DIAGNOSTIC, 29, -5.367595101329e-01, 1.271354266308e-06, 4.7519e+00, 1.2900e-01, - 2DIAGNOSTIC, 30, -5.367595101329e-01, 1.167087694327e-06, 4.8794e+00, 1.2751e-01, - 2DIAGNOSTIC, 31, -5.367595101329e-01, 1.067749903598e-06, 4.9956e+00, 1.1619e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.637696816334e-01, 1.797693134862e+308, 6.4340e+00, 1.4385e+00, - 2DIAGNOSTIC, 2, -4.641173571558e-01, 1.797693134862e+308, 7.0283e+00, 5.9422e-01, - 2DIAGNOSTIC, 3, -4.642517393998e-01, 1.797693134862e+308, 7.6116e+00, 5.8330e-01, - 2DIAGNOSTIC, 4, -4.643935201385e-01, 1.797693134862e+308, 8.5240e+00, 9.1241e-01, - 2DIAGNOSTIC, 5, -4.644060608515e-01, 1.797693134862e+308, 9.1300e+00, 6.0604e-01, - 2DIAGNOSTIC, 6, -4.644218191721e-01, 1.797693134862e+308, 9.7300e+00, 6.0001e-01, - 2DIAGNOSTIC, 7, -4.644525274244e-01, 1.797693134862e+308, 1.0334e+01, 6.0377e-01, - 2DIAGNOSTIC, 8, -4.644661941321e-01, 1.797693134862e+308, 1.1014e+01, 6.7988e-01, - 2DIAGNOSTIC, 9, -4.645007542951e-01, 1.797693134862e+308, 1.2054e+01, 1.0408e+00, - 2DIAGNOSTIC, 10, -4.645035394826e-01, 7.966309844099e-05, 1.2596e+01, 5.4175e-01, - 2DIAGNOSTIC, 11, -4.645147706204e-01, 4.327853661311e-05, 1.3208e+01, 6.1171e-01, - 2DIAGNOSTIC, 12, -4.645250839286e-01, 2.748091971032e-05, 1.3811e+01, 6.0271e-01, - 2DIAGNOSTIC, 13, -4.645321908168e-01, 1.833386135235e-05, 1.4370e+01, 5.5953e-01, - 2DIAGNOSTIC, 14, -4.645362784441e-01, 1.541857632564e-05, 1.4954e+01, 5.8409e-01, - 2DIAGNOSTIC, 15, -4.645393583652e-01, 1.233172148782e-05, 1.5565e+01, 6.1071e-01, - 2DIAGNOSTIC, 16, -4.645410749406e-01, 9.350928643445e-06, 1.6160e+01, 5.9507e-01, - 2DIAGNOSTIC, 17, -4.645540589510e-01, 7.611730146337e-06, 1.7395e+01, 1.2347e+00, - 2DIAGNOSTIC, 18, -4.645544857103e-01, 5.972261806653e-06, 1.8061e+01, 6.6592e-01, - 2DIAGNOSTIC, 19, -4.645542732731e-01, 5.231377890713e-06, 1.8688e+01, 6.2731e-01, - 2DIAGNOSTIC, 20, -4.645541621165e-01, 4.317974963371e-06, 1.9708e+01, 1.0205e+00, - 2DIAGNOSTIC, 21, -4.645541625661e-01, 3.558264812201e-06, 2.1540e+01, 1.8312e+00, - 2DIAGNOSTIC, 22, -4.645541625661e-01, 2.954389310125e-06, 2.2394e+01, 8.5474e-01, - 2DIAGNOSTIC, 23, -4.645541625661e-01, 2.448111934512e-06, 2.3075e+01, 6.8090e-01, - 2DIAGNOSTIC, 24, -4.645541625661e-01, 1.992182011266e-06, 2.3745e+01, 6.7013e-01, - 2DIAGNOSTIC, 25, -4.645541625661e-01, 1.588399264792e-06, 2.4554e+01, 8.0831e-01, - 2DIAGNOSTIC, 26, -4.645541625661e-01, 1.217671617502e-06, 2.5270e+01, 7.1628e-01, - 2DIAGNOSTIC, 27, -4.645541625661e-01, 1.168862271417e-06, 2.5963e+01, 6.9280e-01, - 2DIAGNOSTIC, 28, -4.645541625661e-01, 1.133867055809e-06, 2.6621e+01, 6.5778e-01, - 2DIAGNOSTIC, 29, -4.645541625661e-01, 1.097098361907e-06, 2.7316e+01, 6.9582e-01, - 2DIAGNOSTIC, 30, -4.645541625661e-01, 1.060512960699e-06, 2.7993e+01, 6.7617e-01, - 2DIAGNOSTIC, 31, -4.645541625661e-01, 1.026297176583e-06, 2.8676e+01, 6.8387e-01, - Elapsed time (stage 1): 2.9064e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.184160431775e-01, 1.797693134862e+308, 2.6763e-01, 2.6763e-01, - 1DIAGNOSTIC, 2, -9.268840956687e-01, 1.797693134862e+308, 3.6888e-01, 1.0126e-01, - 1DIAGNOSTIC, 3, -9.339447896055e-01, 1.797693134862e+308, 4.6955e-01, 1.0067e-01, - 1DIAGNOSTIC, 4, -9.396898870379e-01, 1.797693134862e+308, 5.6908e-01, 9.9523e-02, - 1DIAGNOSTIC, 5, -9.440536421859e-01, 1.797693134862e+308, 6.6430e-01, 9.5226e-02, - 1DIAGNOSTIC, 6, -9.473646767210e-01, 1.797693134862e+308, 7.6142e-01, 9.7118e-02, - 1DIAGNOSTIC, 7, -9.499816074993e-01, 1.797693134862e+308, 8.5309e-01, 9.1668e-02, - 1DIAGNOSTIC, 8, -9.522585989072e-01, 1.797693134862e+308, 9.4521e-01, 9.2117e-02, - 1DIAGNOSTIC, 9, -9.542172920281e-01, 1.797693134862e+308, 1.0434e+00, 9.8175e-02, - 1DIAGNOSTIC, 10, -9.558553421565e-01, 2.401931943882e-03, 1.1429e+00, 9.9549e-02, - 1DIAGNOSTIC, 11, -9.573201389538e-01, 1.756351232925e-03, 1.2534e+00, 1.1044e-01, - 1DIAGNOSTIC, 12, -9.585761805390e-01, 1.303446332920e-03, 1.3606e+00, 1.0728e-01, - 1DIAGNOSTIC, 13, -9.595417141888e-01, 9.868224817311e-04, 1.4612e+00, 1.0050e-01, - 1DIAGNOSTIC, 14, -9.602584363154e-01, 7.635070647608e-04, 1.5591e+00, 9.7937e-02, - 1DIAGNOSTIC, 15, -9.609415802208e-01, 6.006742593162e-04, 1.6539e+00, 9.4763e-02, - 1DIAGNOSTIC, 16, -9.614216823810e-01, 4.737126320242e-04, 1.7566e+00, 1.0274e-01, - 1DIAGNOSTIC, 17, -9.618228858355e-01, 3.709244992647e-04, 1.8623e+00, 1.0568e-01, - 1DIAGNOSTIC, 18, -9.618117633724e-01, 2.827682224182e-04, 1.9606e+00, 9.8308e-02, - 1DIAGNOSTIC, 19, -9.618234378977e-01, 2.087520298658e-04, 2.0548e+00, 9.4267e-02, - 1DIAGNOSTIC, 20, -9.616392436733e-01, 1.443910437847e-04, 2.1580e+00, 1.0314e-01, - 1DIAGNOSTIC, 21, -9.617602520805e-01, 9.519512298630e-05, 2.2545e+00, 9.6485e-02, - 1DIAGNOSTIC, 22, -9.616162001898e-01, 5.656205759982e-05, 2.3492e+00, 9.4772e-02, - 1DIAGNOSTIC, 23, -9.617594387426e-01, 3.050447780780e-05, 2.4558e+00, 1.0656e-01, - 1DIAGNOSTIC, 24, -9.616316930979e-01, 1.109704305469e-05, 2.5602e+00, 1.0441e-01, - 1DIAGNOSTIC, 25, -9.616944874584e-01, 1.192077892065e-06, 2.6567e+00, 9.6496e-02, - 1DIAGNOSTIC, 26, -9.616033234387e-01, -3.630302122873e-06, 2.7537e+00, 9.6959e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.099240774693e-01, 1.797693134862e+308, 3.6093e+00, 8.5558e-01, - 1DIAGNOSTIC, 2, -9.140245543806e-01, 1.797693134862e+308, 4.2696e+00, 6.6038e-01, - 1DIAGNOSTIC, 3, -9.180661846608e-01, 1.797693134862e+308, 4.9481e+00, 6.7848e-01, - 1DIAGNOSTIC, 4, -9.217086670852e-01, 1.797693134862e+308, 5.6097e+00, 6.6160e-01, - 1DIAGNOSTIC, 5, -9.243937424998e-01, 1.797693134862e+308, 6.2609e+00, 6.5115e-01, - 1DIAGNOSTIC, 6, -9.264283808896e-01, 1.797693134862e+308, 6.9209e+00, 6.6006e-01, - 1DIAGNOSTIC, 7, -9.281576336792e-01, 1.797693134862e+308, 7.5909e+00, 6.6999e-01, - 1DIAGNOSTIC, 8, -9.296451509410e-01, 1.797693134862e+308, 8.2605e+00, 6.6961e-01, - 1DIAGNOSTIC, 9, -9.309390346064e-01, 1.797693134862e+308, 8.9233e+00, 6.6277e-01, - 1DIAGNOSTIC, 10, -9.319865711720e-01, 1.490069040640e-03, 9.5972e+00, 6.7390e-01, - 1DIAGNOSTIC, 11, -9.329060815579e-01, 1.128215886361e-03, 1.0265e+01, 6.6809e-01, - 1DIAGNOSTIC, 12, -9.337154773795e-01, 8.503813309825e-04, 1.0934e+01, 6.6916e-01, - 1DIAGNOSTIC, 13, -9.344374984632e-01, 6.499573443589e-04, 1.1587e+01, 6.5224e-01, - 1DIAGNOSTIC, 14, -9.350722773916e-01, 5.122061365012e-04, 1.2262e+01, 6.7489e-01, - 1DIAGNOSTIC, 15, -9.356287790641e-01, 4.119625319026e-04, 1.2903e+01, 6.4179e-01, - 1DIAGNOSTIC, 16, -9.361313023035e-01, 3.348013591640e-04, 1.3542e+01, 6.3858e-01, - 1DIAGNOSTIC, 17, -9.365818715345e-01, 2.749396100566e-04, 1.4211e+01, 6.6938e-01, - 1DIAGNOSTIC, 18, -9.369855828188e-01, 2.282996862882e-04, 1.4888e+01, 6.7645e-01, - 1DIAGNOSTIC, 19, -9.373578199443e-01, 1.921395786788e-04, 1.5533e+01, 6.4545e-01, - 1DIAGNOSTIC, 20, -9.376857977651e-01, 1.627016410288e-04, 1.6177e+01, 6.4409e-01, - 1DIAGNOSTIC, 21, -9.379827187337e-01, 1.385752142816e-04, 1.6847e+01, 6.6947e-01, - 1DIAGNOSTIC, 22, -9.382516704964e-01, 1.186541141754e-04, 1.7496e+01, 6.4946e-01, - 1DIAGNOSTIC, 23, -9.384946656512e-01, 1.021704179642e-04, 1.8138e+01, 6.4151e-01, - 1DIAGNOSTIC, 24, -9.387193941999e-01, 8.842619442825e-05, 1.8786e+01, 6.4808e-01, - 1DIAGNOSTIC, 25, -9.389329114689e-01, 7.689644627239e-05, 1.9462e+01, 6.7623e-01, - 1DIAGNOSTIC, 26, -9.391202100329e-01, 6.714231275459e-05, 2.0118e+01, 6.5570e-01, - 1DIAGNOSTIC, 27, -9.392927921983e-01, 5.886406444666e-05, 2.0791e+01, 6.7326e-01, - 1DIAGNOSTIC, 28, -9.394499119987e-01, 5.177260060520e-05, 2.1458e+01, 6.6684e-01, - 1DIAGNOSTIC, 29, -9.395950450847e-01, 4.576475353231e-05, 2.2106e+01, 6.4796e-01, - 1DIAGNOSTIC, 30, -9.397196833699e-01, 4.047576422260e-05, 2.2771e+01, 6.6501e-01, - 1DIAGNOSTIC, 31, -9.398381021004e-01, 3.583346393306e-05, 2.3448e+01, 6.7765e-01, - 1DIAGNOSTIC, 32, -9.399518759349e-01, 3.178622800008e-05, 2.4103e+01, 6.5493e-01, - 1DIAGNOSTIC, 33, -9.400561498471e-01, 2.822974351932e-05, 2.4752e+01, 6.4852e-01, - 1DIAGNOSTIC, 34, -9.401516795367e-01, 2.512604830887e-05, 2.5393e+01, 6.4131e-01, - 1DIAGNOSTIC, 35, -9.402382557062e-01, 2.248309834319e-05, 2.6034e+01, 6.4055e-01, - 1DIAGNOSTIC, 36, -9.403200259831e-01, 2.018456903432e-05, 2.6681e+01, 6.4715e-01, - 1DIAGNOSTIC, 37, -9.403943869542e-01, 1.817923001508e-05, 2.7327e+01, 6.4603e-01, - 1DIAGNOSTIC, 38, -9.404642944705e-01, 1.642474663229e-05, 2.7990e+01, 6.6253e-01, - 1DIAGNOSTIC, 39, -9.405292538057e-01, 1.489573176687e-05, 2.8659e+01, 6.6933e-01, - 1DIAGNOSTIC, 40, -9.405899153156e-01, 1.349311504885e-05, 2.9324e+01, 6.6513e-01, - 1DIAGNOSTIC, 41, -9.406467041000e-01, 1.223090123001e-05, 2.9984e+01, 6.6033e-01, - 1DIAGNOSTIC, 42, -9.406975852091e-01, 1.111267108835e-05, 3.0655e+01, 6.7039e-01, - 1DIAGNOSTIC, 43, -9.407466159110e-01, 1.012860771087e-05, 3.1317e+01, 6.6198e-01, - 1DIAGNOSTIC, 44, -9.407924933280e-01, 9.257323044989e-06, 3.1995e+01, 6.7793e-01, - 1DIAGNOSTIC, 45, -9.408352048406e-01, 8.470954304087e-06, 3.2649e+01, 6.5409e-01, - 1DIAGNOSTIC, 46, -9.408652497720e-01, 7.705320682127e-06, 3.3322e+01, 6.7344e-01, - 1DIAGNOSTIC, 47, -9.409029136418e-01, 7.018537500663e-06, 3.3977e+01, 6.5510e-01, - 1DIAGNOSTIC, 48, -9.409374527759e-01, 6.405589429617e-06, 3.4621e+01, 6.4388e-01, - 1DIAGNOSTIC, 49, -9.409753071550e-01, 5.896615311252e-06, 3.5264e+01, 6.4275e-01, - 1DIAGNOSTIC, 50, -9.410066578843e-01, 5.456620754851e-06, 3.5904e+01, 6.3969e-01, - 1DIAGNOSTIC, 51, -9.410351229341e-01, 5.074892448723e-06, 3.6543e+01, 6.3915e-01, - 1DIAGNOSTIC, 52, -9.410623990438e-01, 4.732637827132e-06, 3.7183e+01, 6.4035e-01, - 1DIAGNOSTIC, 53, -9.410932789074e-01, 4.459653559771e-06, 3.7837e+01, 6.5435e-01, - 1DIAGNOSTIC, 54, -9.411155461291e-01, 4.202836278000e-06, 3.8480e+01, 6.4262e-01, - 1DIAGNOSTIC, 55, -9.411376984377e-01, 3.964203749301e-06, 3.9114e+01, 6.3362e-01, - 1DIAGNOSTIC, 56, -9.411585418465e-01, 3.681678002711e-06, 3.9772e+01, 6.5884e-01, - 1DIAGNOSTIC, 57, -9.411783209191e-01, 3.412454560717e-06, 4.0442e+01, 6.7002e-01, - 1DIAGNOSTIC, 58, -9.411961163640e-01, 3.147543402464e-06, 4.1114e+01, 6.7108e-01, - 1DIAGNOSTIC, 59, -9.412127162164e-01, 2.918889383703e-06, 4.1789e+01, 6.7582e-01, - 1DIAGNOSTIC, 60, -9.412252134478e-01, 2.688681120015e-06, 4.2450e+01, 6.6063e-01, - 1DIAGNOSTIC, 61, -9.412393235585e-01, 2.468280073446e-06, 4.3114e+01, 6.6438e-01, - 1DIAGNOSTIC, 62, -9.412499352534e-01, 2.249786797449e-06, 4.3787e+01, 6.7255e-01, - 1DIAGNOSTIC, 63, -9.412603584254e-01, 2.068271241436e-06, 4.4450e+01, 6.6342e-01, - 1DIAGNOSTIC, 64, -9.412716386309e-01, 1.899271844210e-06, 4.5141e+01, 6.9054e-01, - 1DIAGNOSTIC, 65, -9.412810430059e-01, 1.745958125791e-06, 4.5810e+01, 6.6943e-01, - 1DIAGNOSTIC, 66, -9.412899617144e-01, 1.611536489067e-06, 4.6479e+01, 6.6852e-01, - 1DIAGNOSTIC, 67, -9.412986093712e-01, 1.499660998397e-06, 4.7144e+01, 6.6552e-01, - 1DIAGNOSTIC, 68, -9.413064484118e-01, 1.405315418371e-06, 4.7826e+01, 6.8141e-01, - 1DIAGNOSTIC, 69, -9.413133254848e-01, 1.325587820542e-06, 4.8491e+01, 6.6494e-01, - 1DIAGNOSTIC, 70, -9.413192332929e-01, 1.243388522591e-06, 4.9148e+01, 6.5731e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.802999715150e-01, 1.797693134862e+308, 5.4701e+01, 5.5531e+00, - 1DIAGNOSTIC, 2, -8.837762273089e-01, 1.797693134862e+308, 6.0032e+01, 5.3312e+00, - 1DIAGNOSTIC, 3, -8.873868425343e-01, 1.797693134862e+308, 6.5400e+01, 5.3677e+00, - 1DIAGNOSTIC, 4, -8.905640497644e-01, 1.797693134862e+308, 7.0767e+01, 5.3666e+00, - 1DIAGNOSTIC, 5, -8.936559416331e-01, 1.797693134862e+308, 7.6130e+01, 5.3634e+00, - 1DIAGNOSTIC, 6, -8.962424788934e-01, 1.797693134862e+308, 8.1448e+01, 5.3180e+00, - 1DIAGNOSTIC, 7, -8.987353847698e-01, 1.797693134862e+308, 8.6786e+01, 5.3377e+00, - 1DIAGNOSTIC, 8, -9.011279700241e-01, 1.797693134862e+308, 9.2165e+01, 5.3788e+00, - 1DIAGNOSTIC, 9, -9.033063884747e-01, 1.797693134862e+308, 9.7524e+01, 5.3594e+00, - 1DIAGNOSTIC, 10, -9.047927678633e-01, 1.765825974289e-03, 1.0294e+02, 5.4124e+00, - 1DIAGNOSTIC, 11, -9.061213418251e-01, 1.457656285918e-03, 1.0832e+02, 5.3824e+00, - 1DIAGNOSTIC, 12, -9.071039863309e-01, 1.187285863698e-03, 1.1371e+02, 5.3928e+00, - 1DIAGNOSTIC, 13, -9.080627015946e-01, 9.620179699133e-04, 1.1909e+02, 5.3762e+00, - 1DIAGNOSTIC, 14, -9.087461873988e-01, 7.680717669128e-04, 1.2446e+02, 5.3691e+00, - 1DIAGNOSTIC, 15, -9.094488984545e-01, 6.096585051564e-04, 1.2986e+02, 5.3988e+00, - 1DIAGNOSTIC, 16, -9.099191596310e-01, 4.752722830754e-04, 1.3525e+02, 5.3977e+00, - 1DIAGNOSTIC, 17, -9.104606245766e-01, 3.689978779012e-04, 1.4062e+02, 5.3690e+00, - 1DIAGNOSTIC, 18, -9.108045130360e-01, 2.879754062097e-04, 1.4599e+02, 5.3660e+00, - 1DIAGNOSTIC, 19, -9.112478919775e-01, 2.321850916572e-04, 1.5137e+02, 5.3813e+00, - 1DIAGNOSTIC, 20, -9.115246263198e-01, 1.879932672337e-04, 1.5678e+02, 5.4109e+00, - 1DIAGNOSTIC, 21, -9.119156592547e-01, 1.562679672765e-04, 1.6217e+02, 5.3887e+00, - 1DIAGNOSTIC, 22, -9.121549078532e-01, 1.302078918944e-04, 1.6753e+02, 5.3637e+00, - 1DIAGNOSTIC, 23, -9.123874420866e-01, 1.105512698147e-04, 1.7290e+02, 5.3632e+00, - 1DIAGNOSTIC, 24, -9.126241989404e-01, 9.421411911714e-05, 1.7824e+02, 5.3413e+00, - 1DIAGNOSTIC, 25, -9.128647965540e-01, 8.222727426613e-05, 1.8364e+02, 5.4045e+00, - 1DIAGNOSTIC, 26, -9.131095237737e-01, 7.204837826342e-05, 1.8903e+02, 5.3860e+00, - 1DIAGNOSTIC, 27, -9.133619066718e-01, 6.512369505475e-05, 1.9445e+02, 5.4244e+00, - 1DIAGNOSTIC, 28, -9.136243430746e-01, 5.936937008984e-05, 1.9980e+02, 5.3430e+00, - 1DIAGNOSTIC, 29, -9.138920833528e-01, 5.615740900014e-05, 2.0518e+02, 5.3816e+00, - 1DIAGNOSTIC, 30, -9.141670770278e-01, 5.361721279424e-05, 2.1054e+02, 5.3649e+00, - 1DIAGNOSTIC, 31, -9.144479451117e-01, 5.300421400484e-05, 2.1593e+02, 5.3858e+00, - 1DIAGNOSTIC, 32, -9.147335211818e-01, 5.258824424147e-05, 2.2131e+02, 5.3798e+00, - 1DIAGNOSTIC, 33, -9.150229382103e-01, 5.220319314148e-05, 2.2671e+02, 5.4059e+00, - 1DIAGNOSTIC, 34, -9.153185467695e-01, 5.182576287853e-05, 2.3207e+02, 5.3592e+00, - 1DIAGNOSTIC, 35, -9.156180212100e-01, 5.141220656666e-05, 2.3744e+02, 5.3720e+00, - 1DIAGNOSTIC, 36, -9.159184886391e-01, 5.090623520754e-05, 2.4277e+02, 5.3251e+00, - 1DIAGNOSTIC, 37, -9.162186263214e-01, 5.028754087107e-05, 2.4816e+02, 5.3930e+00, - 1DIAGNOSTIC, 38, -9.165195442441e-01, 4.958113314118e-05, 2.5351e+02, 5.3511e+00, - 1DIAGNOSTIC, 39, -9.168207787119e-01, 4.877732025336e-05, 2.5890e+02, 5.3898e+00, - 1DIAGNOSTIC, 40, -9.171155348631e-01, 4.784267607964e-05, 2.6429e+02, 5.3890e+00, - 1DIAGNOSTIC, 41, -9.174133672362e-01, 4.682829170824e-05, 2.6967e+02, 5.3744e+00, - 1DIAGNOSTIC, 42, -9.177032471774e-01, 4.569912953159e-05, 2.7503e+02, 5.3628e+00, - 1DIAGNOSTIC, 43, -9.179909971165e-01, 4.447627428359e-05, 2.8040e+02, 5.3729e+00, - 1DIAGNOSTIC, 44, -9.182714726412e-01, 4.317228473440e-05, 2.8577e+02, 5.3676e+00, - 1DIAGNOSTIC, 45, -9.185496974753e-01, 4.183183401596e-05, 2.9114e+02, 5.3718e+00, - 1DIAGNOSTIC, 46, -9.188208649512e-01, 4.045146786573e-05, 2.9650e+02, 5.3598e+00, - 1DIAGNOSTIC, 47, -9.190863366624e-01, 3.903834046566e-05, 3.0189e+02, 5.3863e+00, - 1DIAGNOSTIC, 48, -9.193484241012e-01, 3.763029270115e-05, 3.0724e+02, 5.3500e+00, - 1DIAGNOSTIC, 49, -9.195995045213e-01, 3.621600480026e-05, 3.1263e+02, 5.3953e+00, - 1DIAGNOSTIC, 50, -9.198372942749e-01, 3.473394750815e-05, 3.1800e+02, 5.3712e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.784257213307e-01, 1.797693134862e+308, 3.6189e+02, 4.3882e+01, - 1DIAGNOSTIC, 2, -8.799992092881e-01, 1.797693134862e+308, 4.0517e+02, 4.3287e+01, - 1DIAGNOSTIC, 3, -8.819369593183e-01, 1.797693134862e+308, 4.4869e+02, 4.3521e+01, - 1DIAGNOSTIC, 4, -8.836983660973e-01, 1.797693134862e+308, 4.9224e+02, 4.3547e+01, - 1DIAGNOSTIC, 5, -8.852630444415e-01, 1.797693134862e+308, 5.3567e+02, 4.3426e+01, - 1DIAGNOSTIC, 6, -8.866832376947e-01, 1.797693134862e+308, 5.7909e+02, 4.3421e+01, - 1DIAGNOSTIC, 7, -8.879902351594e-01, 1.797693134862e+308, 6.2258e+02, 4.3491e+01, - 1DIAGNOSTIC, 8, -8.891823745043e-01, 1.797693134862e+308, 6.6587e+02, 4.3294e+01, - 1DIAGNOSTIC, 9, -8.903081898726e-01, 1.797693134862e+308, 7.0950e+02, 4.3629e+01, - 1DIAGNOSTIC, 10, -8.913895404024e-01, 9.434519366058e-04, 7.5299e+02, 4.3491e+01, - 1DIAGNOSTIC, 11, -8.925357440037e-01, 8.041668869137e-04, 7.9678e+02, 4.3782e+01, - 1DIAGNOSTIC, 12, -8.935814857447e-01, 6.852200585764e-04, 8.4006e+02, 4.3288e+01, - 1DIAGNOSTIC, 13, -8.945986653308e-01, 5.949740079473e-04, 8.8341e+02, 4.3343e+01, - 1DIAGNOSTIC, 14, -8.955546592739e-01, 5.252964818464e-04, 9.2701e+02, 4.3600e+01, - 1DIAGNOSTIC, 15, -8.965120060418e-01, 4.703669212831e-04, 9.7086e+02, 4.3852e+01, - 1DIAGNOSTIC, 16, -8.974689268365e-01, 4.262885585225e-04, 1.0145e+03, 4.3625e+01, - 1DIAGNOSTIC, 17, -8.981909542184e-01, 3.859722754803e-04, 1.0596e+03, 4.5136e+01, - 1DIAGNOSTIC, 18, -8.990412142240e-01, 3.505918913889e-04, 1.1042e+03, 4.4545e+01, - 1DIAGNOSTIC, 19, -8.997288769329e-01, 3.167123917775e-04, 1.1492e+03, 4.5072e+01, - 1DIAGNOSTIC, 20, -9.004819336020e-01, 2.858431215781e-04, 1.1945e+03, 4.5292e+01, - Elapsed time (stage 2): 1195 - - -Total elapsed time: 1249 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:07:53 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:07:53 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:07:56 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:05 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 28808 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:05 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:09 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:09 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 28959 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:09 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/anat/sub-PNC003_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:13 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:13 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29083 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:13 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29091 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:13 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:17 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:19 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:19 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:21 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:24 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:24 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:25 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:26 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:28 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/surf/sub-PNC003_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:29 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:39 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:50 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02/sub-PNC003_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC003 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:51 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC003 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:51 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC003 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:51 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30511 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:53 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:53 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc/sub-PNC003_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/xfm/sub-PNC003_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30588 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:55 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:08:55 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC003_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 70.600 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/logs/proc_func_18-03-2024-9658.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:09:00 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC003 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-02/QC/sub-PNC003_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/24650_micapipe_proc-func_sub-PNC003_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC003* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 70.667 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC003_ses-02 -========================reprocessing without filter=================== -sub-PNC003_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC003 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC003 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC003 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC003 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:09:05 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:09:05 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-1_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:11:17 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:13:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:13:41 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.41 (mm) at sub-brick 2 -++ Max delta displ in automask = 0.28 (mm) at sub-brick 181 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:26:25 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:26:43 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-2_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:28:55 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:31:07 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC003/ses-03/func/sub-PNC003_ses-03_task-rest_echo-3_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:33:24 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.631 -2.461 2.402 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.0 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.784 -2.925 4.607 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.8 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:38:12 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999998569488525 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:38:43 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55e1676cf6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.602, 56.3239, -119.923] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e167546730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e1676e6320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55e1676d2fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [81.4958, 115.5, -129.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e1676d8e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e167ee3230 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55e167ee15c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.602, 56.3239, -119.923] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e1676d53f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e168b1d450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55e167edfda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [81.4958, 115.5, -129.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e1676dc360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e169317780 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.919278815647e-01, 1.797693134862e+308, 4.5970e-02, 4.5970e-02, - 2DIAGNOSTIC, 2, -5.925919547191e-01, 1.797693134862e+308, 4.7277e-02, 1.3070e-03, - 2DIAGNOSTIC, 3, -5.957896183061e-01, 1.797693134862e+308, 4.8589e-02, 1.3120e-03, - 2DIAGNOSTIC, 4, -6.120285313695e-01, 1.797693134862e+308, 4.9912e-02, 1.3230e-03, - 2DIAGNOSTIC, 5, -6.378476780570e-01, 1.797693134862e+308, 5.2374e-02, 2.4621e-03, - 2DIAGNOSTIC, 6, -6.484135437559e-01, 1.797693134862e+308, 5.4174e-02, 1.8001e-03, - 2DIAGNOSTIC, 7, -6.499338360363e-01, 1.797693134862e+308, 5.5440e-02, 1.2660e-03, - 2DIAGNOSTIC, 8, -6.530823907175e-01, 1.797693134862e+308, 5.6654e-02, 1.2140e-03, - 2DIAGNOSTIC, 9, -6.538442871576e-01, 1.797693134862e+308, 5.7916e-02, 1.2619e-03, - 2DIAGNOSTIC, 10, -6.550999205509e-01, 7.970812172928e-03, 5.9410e-02, 1.4942e-03, - 2DIAGNOSTIC, 11, -6.560456673757e-01, 6.221431190522e-03, 6.0835e-02, 1.4250e-03, - 2DIAGNOSTIC, 12, -6.576038078164e-01, 4.317146448491e-03, 6.2947e-02, 2.1119e-03, - 2DIAGNOSTIC, 13, -6.579343141193e-01, 2.446913669796e-03, 6.4418e-02, 1.4708e-03, - 2DIAGNOSTIC, 14, -6.585042413109e-01, 1.147704064580e-03, 6.5884e-02, 1.4658e-03, - 2DIAGNOSTIC, 15, -6.596140925764e-01, 7.143236238481e-04, 6.7861e-02, 1.9770e-03, - 2DIAGNOSTIC, 16, -6.598540027439e-01, 5.704204289796e-04, 6.9371e-02, 1.5099e-03, - 2DIAGNOSTIC, 17, -6.604988903115e-01, 4.461595455039e-04, 7.1142e-02, 1.7710e-03, - 2DIAGNOSTIC, 18, -6.608985236545e-01, 3.822819874556e-04, 7.3266e-02, 2.1241e-03, - 2DIAGNOSTIC, 19, -6.612827850705e-01, 3.164259780943e-04, 7.4756e-02, 1.4901e-03, - 2DIAGNOSTIC, 20, -6.615658529879e-01, 2.616139172615e-04, 7.6224e-02, 1.4679e-03, - 2DIAGNOSTIC, 21, -6.620420716163e-01, 2.169756586443e-04, 7.7689e-02, 1.4651e-03, - 2DIAGNOSTIC, 22, -6.634116978895e-01, 2.149148405744e-04, 7.9380e-02, 1.6911e-03, - 2DIAGNOSTIC, 23, -6.638321731828e-01, 2.067010816547e-04, 8.1303e-02, 1.9228e-03, - 2DIAGNOSTIC, 24, -6.651362343250e-01, 2.139484554271e-04, 8.2985e-02, 1.6820e-03, - 2DIAGNOSTIC, 25, -6.657668880593e-01, 2.309940577182e-04, 8.4919e-02, 1.9341e-03, - 2DIAGNOSTIC, 26, -6.680386842461e-01, 2.671016177167e-04, 8.6381e-02, 1.4620e-03, - 2DIAGNOSTIC, 27, -6.754241296945e-01, 4.043354951398e-04, 8.8108e-02, 1.7271e-03, - 2DIAGNOSTIC, 28, -6.766315279149e-01, 5.154830337309e-04, 8.9800e-02, 1.6921e-03, - 2DIAGNOSTIC, 29, -6.769900673864e-01, 5.826095042700e-04, 9.1992e-02, 2.1920e-03, - 2DIAGNOSTIC, 30, -6.771307123482e-01, 5.979307474255e-04, 9.3727e-02, 1.7350e-03, - 2DIAGNOSTIC, 31, -6.773519415738e-01, 5.647169420703e-04, 9.5231e-02, 1.5042e-03, - 2DIAGNOSTIC, 32, -6.783713770196e-01, 5.110502317530e-04, 9.6758e-02, 1.5271e-03, - 2DIAGNOSTIC, 33, -6.785655524610e-01, 4.196358446060e-04, 9.8244e-02, 1.4858e-03, - 2DIAGNOSTIC, 34, -6.787851799385e-01, 3.151519655125e-04, 9.9748e-02, 1.5042e-03, - 2DIAGNOSTIC, 35, -6.792539149989e-01, 2.012572515436e-04, 1.0171e-01, 1.9619e-03, - 2DIAGNOSTIC, 36, -6.793863333865e-01, 1.012758886824e-04, 1.0322e-01, 1.5061e-03, - 2DIAGNOSTIC, 37, -6.796831185236e-01, 8.659179589950e-05, 1.0471e-01, 1.4920e-03, - 2DIAGNOSTIC, 38, -6.797946176849e-01, 7.939974661049e-05, 1.0670e-01, 1.9941e-03, - 2DIAGNOSTIC, 39, -6.799589710926e-01, 7.102237041202e-05, 1.0824e-01, 1.5349e-03, - 2DIAGNOSTIC, 40, -6.801247057551e-01, 5.970567381267e-05, 1.0983e-01, 1.5910e-03, - 2DIAGNOSTIC, 41, -6.803248149214e-01, 4.746085363087e-05, 1.1158e-01, 1.7560e-03, - 2DIAGNOSTIC, 42, -6.804282280905e-01, 4.284945461468e-05, 1.1310e-01, 1.5199e-03, - 2DIAGNOSTIC, 43, -6.807604376683e-01, 3.970806214853e-05, 1.1531e-01, 2.2080e-03, - 2DIAGNOSTIC, 44, -6.811317736294e-01, 3.861143439434e-05, 1.1682e-01, 1.5099e-03, - 2DIAGNOSTIC, 45, -6.812136384172e-01, 3.912984307257e-05, 1.1831e-01, 1.4901e-03, - 2DIAGNOSTIC, 46, -6.818990346794e-01, 4.357103620940e-05, 1.2005e-01, 1.7331e-03, - 2DIAGNOSTIC, 47, -6.824849184079e-01, 5.163731971713e-05, 1.2271e-01, 2.6610e-03, - 2DIAGNOSTIC, 48, -6.824874609738e-01, 5.537515135697e-05, 1.2842e-01, 5.7111e-03, - 2DIAGNOSTIC, 49, -6.824874607554e-01, 5.524028371977e-05, 1.3416e-01, 5.7409e-03, - 2DIAGNOSTIC, 50, -6.824874607554e-01, 5.134619002149e-05, 1.3685e-01, 2.6879e-03, - 2DIAGNOSTIC, 51, -6.824874607554e-01, 4.437154966236e-05, 1.3862e-01, 1.7760e-03, - 2DIAGNOSTIC, 52, -6.824874607554e-01, 3.419698516626e-05, 1.4034e-01, 1.7128e-03, - 2DIAGNOSTIC, 53, -6.824874607554e-01, 2.387057386524e-05, 1.4226e-01, 1.9262e-03, - 2DIAGNOSTIC, 54, -6.824874607554e-01, 1.476605487084e-05, 1.4418e-01, 1.9200e-03, - 2DIAGNOSTIC, 55, -6.824874607554e-01, 5.179980450149e-06, 1.4589e-01, 1.7099e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.146324261018e-01, 1.797693134862e+308, 2.0151e-01, 5.5623e-02, - 2DIAGNOSTIC, 2, -3.149233400527e-01, 1.797693134862e+308, 2.0485e-01, 3.3360e-03, - 2DIAGNOSTIC, 3, -3.166575106681e-01, 1.797693134862e+308, 2.0800e-01, 3.1459e-03, - 2DIAGNOSTIC, 4, -3.186511188228e-01, 1.797693134862e+308, 2.1155e-01, 3.5579e-03, - 2DIAGNOSTIC, 5, -3.220903862145e-01, 1.797693134862e+308, 2.1433e-01, 2.7752e-03, - 2DIAGNOSTIC, 6, -3.351625297110e-01, 1.797693134862e+308, 2.1680e-01, 2.4669e-03, - 2DIAGNOSTIC, 7, -3.440111550783e-01, 1.797693134862e+308, 2.1935e-01, 2.5489e-03, - 2DIAGNOSTIC, 8, -3.772721207665e-01, 1.797693134862e+308, 2.2256e-01, 3.2139e-03, - 2DIAGNOSTIC, 9, -3.824591393975e-01, 1.797693134862e+308, 2.2522e-01, 2.6629e-03, - 2DIAGNOSTIC, 10, -3.842651309540e-01, 1.543771040110e-02, 2.2773e-01, 2.5120e-03, - 2DIAGNOSTIC, 11, -3.907314489156e-01, 1.547338838771e-02, 2.3133e-01, 3.5951e-03, - 2DIAGNOSTIC, 12, -4.082232727425e-01, 1.524711559317e-02, 2.3467e-01, 3.3379e-03, - 2DIAGNOSTIC, 13, -4.309554522268e-01, 1.508343961595e-02, 2.3732e-01, 2.6510e-03, - 2DIAGNOSTIC, 14, -4.816921974993e-01, 1.636964997523e-02, 2.4198e-01, 4.6580e-03, - 2DIAGNOSTIC, 15, -4.855821522415e-01, 1.629673649802e-02, 2.4468e-01, 2.7001e-03, - 2DIAGNOSTIC, 16, -5.044191547805e-01, 1.624975540187e-02, 2.4733e-01, 2.6500e-03, - 2DIAGNOSTIC, 17, -5.310566017566e-01, 1.616111100806e-02, 2.5018e-01, 2.8570e-03, - 2DIAGNOSTIC, 18, -5.631147359328e-01, 1.708849855278e-02, 2.5261e-01, 2.4309e-03, - 2DIAGNOSTIC, 19, -5.679626002468e-01, 1.665386464240e-02, 2.5507e-01, 2.4521e-03, - 2DIAGNOSTIC, 20, -5.909559484780e-01, 1.558802730000e-02, 2.5816e-01, 3.0911e-03, - 2DIAGNOSTIC, 21, -6.043336004277e-01, 1.385083084027e-02, 2.6263e-01, 4.4692e-03, - 2DIAGNOSTIC, 22, -6.048512698038e-01, 1.157875212518e-02, 2.6537e-01, 2.7430e-03, - 2DIAGNOSTIC, 23, -6.051308287457e-01, 9.119282742744e-03, 2.6777e-01, 2.4021e-03, - 2DIAGNOSTIC, 24, -6.051947478060e-01, 7.445394963700e-03, 2.7021e-01, 2.4390e-03, - 2DIAGNOSTIC, 25, -6.052267362286e-01, 5.354278615890e-03, 2.7364e-01, 3.4311e-03, - 2DIAGNOSTIC, 26, -6.053082215512e-01, 3.410876446525e-03, 2.7623e-01, 2.5930e-03, - 2DIAGNOSTIC, 27, -6.053475023899e-01, 1.926116216206e-03, 2.7852e-01, 2.2840e-03, - 2DIAGNOSTIC, 28, -6.054668138330e-01, 1.097900174088e-03, 2.8078e-01, 2.2578e-03, - 2DIAGNOSTIC, 29, -6.055973781688e-01, 3.320411753346e-04, 2.8337e-01, 2.5971e-03, - 2DIAGNOSTIC, 30, -6.056033821687e-01, 4.553847581031e-05, 2.8595e-01, 2.5761e-03, - 2DIAGNOSTIC, 31, -6.056508226362e-01, 3.181023464261e-05, 2.8825e-01, 2.2969e-03, - 2DIAGNOSTIC, 32, -6.056929277381e-01, 2.632273321537e-05, 2.9056e-01, 2.3181e-03, - 2DIAGNOSTIC, 33, -6.057651085859e-01, 2.498205031055e-05, 2.9317e-01, 2.6019e-03, - 2DIAGNOSTIC, 34, -6.057852281912e-01, 2.286589388509e-05, 2.9710e-01, 3.9320e-03, - 2DIAGNOSTIC, 35, -6.057965101391e-01, 1.955543567573e-05, 3.0072e-01, 3.6201e-03, - 2DIAGNOSTIC, 36, -6.057965417627e-01, 1.604666247210e-05, 3.0401e-01, 3.2921e-03, - 2DIAGNOSTIC, 37, -6.057965435564e-01, 1.190926012142e-05, 3.0729e-01, 3.2780e-03, - 2DIAGNOSTIC, 38, -6.057965436590e-01, 8.700561835863e-06, 3.1055e-01, 3.2649e-03, - 2DIAGNOSTIC, 39, -6.057965436653e-01, 6.831149996209e-06, 3.1381e-01, 3.2609e-03, - 2DIAGNOSTIC, 40, -6.057965436658e-01, 4.600157092791e-06, 3.1704e-01, 3.2220e-03, - 2DIAGNOSTIC, 41, -6.057965436658e-01, 2.788675444142e-06, 3.2031e-01, 3.2692e-03, - 2DIAGNOSTIC, 42, -6.057965436658e-01, 1.430435897735e-06, 3.2323e-01, 2.9280e-03, - 2DIAGNOSTIC, 43, -6.057965436658e-01, 1.009110670826e-06, 3.2589e-01, 2.6519e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.630805653899e-01, 1.797693134862e+308, 3.9508e-01, 6.9195e-02, - 2DIAGNOSTIC, 2, -4.634700508053e-01, 1.797693134862e+308, 4.0775e-01, 1.2668e-02, - 2DIAGNOSTIC, 3, -4.641109527249e-01, 1.797693134862e+308, 4.2112e-01, 1.3371e-02, - 2DIAGNOSTIC, 4, -4.654379891357e-01, 1.797693134862e+308, 4.3460e-01, 1.3481e-02, - 2DIAGNOSTIC, 5, -4.669818443393e-01, 1.797693134862e+308, 4.4799e-01, 1.3391e-02, - 2DIAGNOSTIC, 6, -4.682041285789e-01, 1.797693134862e+308, 4.6129e-01, 1.3302e-02, - 2DIAGNOSTIC, 7, -4.690524020973e-01, 1.797693134862e+308, 4.7874e-01, 1.7449e-02, - 2DIAGNOSTIC, 8, -4.713239812817e-01, 1.797693134862e+308, 5.1343e-01, 3.4692e-02, - 2DIAGNOSTIC, 9, -4.713246443989e-01, 1.797693134862e+308, 5.2675e-01, 1.3312e-02, - 2DIAGNOSTIC, 10, -4.713352453287e-01, 1.345121247893e-03, 5.4101e-01, 1.4268e-02, - 2DIAGNOSTIC, 11, -4.713530632355e-01, 1.134865440761e-03, 5.5517e-01, 1.4158e-02, - 2DIAGNOSTIC, 12, -4.713834310888e-01, 8.794503368247e-04, 5.6845e-01, 1.3277e-02, - 2DIAGNOSTIC, 13, -4.714361303897e-01, 6.148979284553e-04, 5.8135e-01, 1.2902e-02, - 2DIAGNOSTIC, 14, -4.715031383571e-01, 3.920734605236e-04, 5.9361e-01, 1.2260e-02, - 2DIAGNOSTIC, 15, -4.716327893066e-01, 2.316521046053e-04, 6.0635e-01, 1.2734e-02, - 2DIAGNOSTIC, 16, -4.717708919616e-01, 1.219071437410e-04, 6.1797e-01, 1.1623e-02, - 2DIAGNOSTIC, 17, -4.718574666374e-01, 4.503640612782e-05, 6.2912e-01, 1.1147e-02, - 2DIAGNOSTIC, 18, -4.719455800977e-01, 5.217648294153e-05, 6.4167e-01, 1.2555e-02, - 2DIAGNOSTIC, 19, -4.720945443976e-01, 5.863837932396e-05, 6.5480e-01, 1.3133e-02, - 2DIAGNOSTIC, 20, -4.722419427871e-01, 6.381788954267e-05, 6.7216e-01, 1.7360e-02, - 2DIAGNOSTIC, 21, -4.722864802204e-01, 6.440897436177e-05, 6.8375e-01, 1.1588e-02, - 2DIAGNOSTIC, 22, -4.723424576775e-01, 6.150550698117e-05, 6.9454e-01, 1.0792e-02, - 2DIAGNOSTIC, 23, -4.724199477228e-01, 5.668393827256e-05, 7.0571e-01, 1.1165e-02, - 2DIAGNOSTIC, 24, -4.726334508790e-01, 5.402764500221e-05, 7.1965e-01, 1.3946e-02, - 2DIAGNOSTIC, 25, -4.727170558426e-01, 5.157745089576e-05, 7.3083e-01, 1.1178e-02, - 2DIAGNOSTIC, 26, -4.729788890384e-01, 5.390390179547e-05, 7.4666e-01, 1.5831e-02, - 2DIAGNOSTIC, 27, -4.730997032224e-01, 5.567602431528e-05, 7.5961e-01, 1.2946e-02, - 2DIAGNOSTIC, 28, -4.731325658952e-01, 5.472672907501e-05, 7.7060e-01, 1.0992e-02, - 2DIAGNOSTIC, 29, -4.735615655254e-01, 6.077268958023e-05, 7.8159e-01, 1.0986e-02, - 2DIAGNOSTIC, 30, -4.737797789311e-01, 6.787960084288e-05, 7.9409e-01, 1.2499e-02, - 2DIAGNOSTIC, 31, -4.739314529491e-01, 7.196538857340e-05, 8.0693e-01, 1.2845e-02, - 2DIAGNOSTIC, 32, -4.740133779257e-01, 7.174731569772e-05, 8.2141e-01, 1.4482e-02, - 2DIAGNOSTIC, 33, -4.741336888655e-01, 6.844199652825e-05, 8.3205e-01, 1.0636e-02, - 2DIAGNOSTIC, 34, -4.742446299900e-01, 6.458818198531e-05, 8.4419e-01, 1.2135e-02, - 2DIAGNOSTIC, 35, -4.745163617923e-01, 6.082935587179e-05, 8.5657e-01, 1.2389e-02, - 2DIAGNOSTIC, 36, -4.746690101594e-01, 5.845598563137e-05, 8.7155e-01, 1.4976e-02, - 2DIAGNOSTIC, 37, -4.747266522906e-01, 5.374146891590e-05, 8.8210e-01, 1.0546e-02, - 2DIAGNOSTIC, 38, -4.749771848641e-01, 4.865208554940e-05, 8.9443e-01, 1.2337e-02, - 2DIAGNOSTIC, 39, -4.751195973136e-01, 4.793900234274e-05, 9.0951e-01, 1.5081e-02, - 2DIAGNOSTIC, 40, -4.751212463782e-01, 4.597444412548e-05, 9.2143e-01, 1.1919e-02, - 2DIAGNOSTIC, 41, -4.751445206888e-01, 4.240889886937e-05, 9.3283e-01, 1.1392e-02, - 2DIAGNOSTIC, 42, -4.751527169514e-01, 3.635427250524e-05, 9.4319e-01, 1.0361e-02, - 2DIAGNOSTIC, 43, -4.751665607252e-01, 2.902982243948e-05, 9.5380e-01, 1.0609e-02, - 2DIAGNOSTIC, 44, -4.751920174157e-01, 2.109053450113e-05, 9.7504e-01, 2.1243e-02, - 2DIAGNOSTIC, 45, -4.751928653104e-01, 1.519725743586e-05, 9.8527e-01, 1.0227e-02, - 2DIAGNOSTIC, 46, -4.751921791872e-01, 1.021402752110e-05, 9.9550e-01, 1.0237e-02, - 2DIAGNOSTIC, 47, -4.751949931387e-01, 5.239832884571e-06, 1.0068e+00, 1.1333e-02, - 2DIAGNOSTIC, 48, -4.751973163625e-01, 3.156355490468e-06, 1.0184e+00, 1.1568e-02, - 2DIAGNOSTIC, 49, -4.751948972792e-01, 2.637188515370e-06, 1.0292e+00, 1.0782e-02, - 2DIAGNOSTIC, 50, -4.751957307705e-01, 1.974925885849e-06, 1.0408e+00, 1.1629e-02, - 2DIAGNOSTIC, 51, -4.752034899694e-01, 1.580758548447e-06, 1.0511e+00, 1.0324e-02, - 2DIAGNOSTIC, 52, -4.752185380882e-01, 1.374869427907e-06, 1.0613e+00, 1.0148e-02, - 2DIAGNOSTIC, 53, -4.752482963506e-01, 1.586288191788e-06, 1.0718e+00, 1.0531e-02, - 2DIAGNOSTIC, 54, -4.753335168623e-01, 2.922522388732e-06, 1.0862e+00, 1.4421e-02, - 2DIAGNOSTIC, 55, -4.753484915055e-01, 4.139707725396e-06, 1.1167e+00, 3.0510e-02, - 2DIAGNOSTIC, 56, -4.753484939036e-01, 4.972645491642e-06, 1.1287e+00, 1.1997e-02, - 2DIAGNOSTIC, 57, -4.753485629273e-01, 5.395191721977e-06, 1.1393e+00, 1.0603e-02, - 2DIAGNOSTIC, 58, -4.753486789469e-01, 5.359254454072e-06, 1.1496e+00, 1.0270e-02, - 2DIAGNOSTIC, 59, -4.753488746316e-01, 4.826454159095e-06, 1.1601e+00, 1.0496e-02, - 2DIAGNOSTIC, 60, -4.753492050635e-01, 3.909788840361e-06, 1.1707e+00, 1.0584e-02, - 2DIAGNOSTIC, 61, -4.753497505353e-01, 2.792665045069e-06, 1.1810e+00, 1.0325e-02, - 2DIAGNOSTIC, 62, -4.753506175460e-01, 1.651688626477e-06, 1.1913e+00, 1.0287e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.963842269167e-01, 1.797693134862e+308, 1.4108e+00, 2.1946e-01, - Elapsed time (stage 0): 1.4397e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.637632008566e-01, 1.797693134862e+308, 3.5971e-02, 3.5970e-02, - 2DIAGNOSTIC, 2, -9.662126626590e-01, 1.797693134862e+308, 3.7222e-02, 1.2510e-03, - 2DIAGNOSTIC, 3, -9.694543834036e-01, 1.797693134862e+308, 3.8543e-02, 1.3208e-03, - 2DIAGNOSTIC, 4, -9.721082302245e-01, 1.797693134862e+308, 3.9823e-02, 1.2798e-03, - 2DIAGNOSTIC, 5, -9.774921377979e-01, 1.797693134862e+308, 4.1363e-02, 1.5399e-03, - 2DIAGNOSTIC, 6, -1.002092667846e+00, 1.797693134862e+308, 4.3184e-02, 1.8210e-03, - 2DIAGNOSTIC, 7, -1.003325251763e+00, 1.797693134862e+308, 4.4734e-02, 1.5500e-03, - 2DIAGNOSTIC, 8, -1.006640704310e+00, 1.797693134862e+308, 4.6490e-02, 1.7560e-03, - 2DIAGNOSTIC, 9, -1.011003983246e+00, 1.797693134862e+308, 4.7989e-02, 1.4992e-03, - 2DIAGNOSTIC, 10, -1.011145029135e+00, 3.777788423347e-03, 4.9374e-02, 1.3850e-03, - 2DIAGNOSTIC, 11, -1.015370824490e+00, 3.306930053396e-03, 5.1006e-02, 1.6320e-03, - 2DIAGNOSTIC, 12, -1.016734907000e+00, 2.707848660560e-03, 5.2783e-02, 1.7769e-03, - 2DIAGNOSTIC, 13, -1.018158209864e+00, 2.068654977963e-03, 5.4377e-02, 1.5941e-03, - 2DIAGNOSTIC, 14, -1.019179311462e+00, 1.412612412250e-03, 5.5697e-02, 1.3199e-03, - 2DIAGNOSTIC, 15, -1.019167594691e+00, 8.067600475695e-04, 5.7025e-02, 1.3280e-03, - 2DIAGNOSTIC, 16, -1.020017573442e+00, 6.573648125350e-04, 5.8473e-02, 1.4479e-03, - 2DIAGNOSTIC, 17, -1.020946271227e+00, 5.001649936870e-04, 5.9899e-02, 1.4260e-03, - 2DIAGNOSTIC, 18, -1.022103137065e+00, 3.836051209913e-04, 6.1501e-02, 1.6019e-03, - 2DIAGNOSTIC, 19, -1.022896836291e+00, 3.216763057628e-04, 6.2901e-02, 1.4009e-03, - 2DIAGNOSTIC, 20, -1.022557900510e+00, 2.323956308377e-04, 6.4874e-02, 1.9729e-03, - 2DIAGNOSTIC, 21, -1.023059383638e+00, 1.941510970839e-04, 6.6242e-02, 1.3671e-03, - 2DIAGNOSTIC, 22, -1.023325967404e+00, 1.616803106730e-04, 6.7839e-02, 1.5979e-03, - 2DIAGNOSTIC, 23, -1.024217594495e+00, 1.449185820975e-04, 6.9632e-02, 1.7929e-03, - 2DIAGNOSTIC, 24, -1.025414890635e+00, 1.421497713866e-04, 7.1021e-02, 1.3890e-03, - 2DIAGNOSTIC, 25, -1.025044472382e+00, 1.219442042339e-04, 7.2398e-02, 1.3771e-03, - 2DIAGNOSTIC, 26, -1.025385546937e+00, 1.052261417894e-04, 7.4462e-02, 2.0640e-03, - 2DIAGNOSTIC, 27, -1.025563975195e+00, 9.117296990348e-05, 7.5811e-02, 1.3490e-03, - 2DIAGNOSTIC, 28, -1.026006662539e+00, 8.526736793182e-05, 7.7960e-02, 2.1491e-03, - 2DIAGNOSTIC, 29, -1.026247822127e+00, 8.180391295662e-05, 8.0012e-02, 2.0511e-03, - 2DIAGNOSTIC, 30, -1.025570715671e+00, 6.147864392694e-05, 8.2592e-02, 2.5799e-03, - 2DIAGNOSTIC, 31, -1.025684496701e+00, 4.277126863276e-05, 8.4593e-02, 2.0010e-03, - 2DIAGNOSTIC, 32, -1.025723639639e+00, 2.371099886242e-05, 8.7088e-02, 2.4951e-03, - 2DIAGNOSTIC, 33, -1.025752946112e+00, 1.105185849194e-05, 8.8787e-02, 1.6990e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.534635551518e-01, 1.797693134862e+308, 1.3446e-01, 4.5674e-02, - 2DIAGNOSTIC, 2, -6.541264707386e-01, 1.797693134862e+308, 1.3734e-01, 2.8830e-03, - 2DIAGNOSTIC, 3, -6.574761542858e-01, 1.797693134862e+308, 1.4028e-01, 2.9361e-03, - 2DIAGNOSTIC, 4, -6.619295790863e-01, 1.797693134862e+308, 1.4291e-01, 2.6262e-03, - 2DIAGNOSTIC, 5, -6.678255892866e-01, 1.797693134862e+308, 1.4520e-01, 2.2910e-03, - 2DIAGNOSTIC, 6, -6.743913520568e-01, 1.797693134862e+308, 1.4748e-01, 2.2838e-03, - 2DIAGNOSTIC, 7, -6.865554853081e-01, 1.797693134862e+308, 1.4995e-01, 2.4729e-03, - 2DIAGNOSTIC, 8, -7.001580123416e-01, 1.797693134862e+308, 1.5277e-01, 2.8191e-03, - 2DIAGNOSTIC, 9, -7.273795778716e-01, 1.797693134862e+308, 1.5640e-01, 3.6280e-03, - 2DIAGNOSTIC, 10, -7.293427724075e-01, 7.613396102529e-03, 1.5929e-01, 2.8858e-03, - 2DIAGNOSTIC, 11, -7.327044975630e-01, 7.702816370566e-03, 1.6199e-01, 2.7070e-03, - 2DIAGNOSTIC, 12, -7.363023548120e-01, 7.237991109245e-03, 1.6466e-01, 2.6681e-03, - 2DIAGNOSTIC, 13, -7.382948230096e-01, 6.354828002003e-03, 1.6734e-01, 2.6779e-03, - 2DIAGNOSTIC, 14, -7.415495463323e-01, 5.242998062649e-03, 1.7024e-01, 2.9020e-03, - 2DIAGNOSTIC, 15, -7.457327851240e-01, 4.083445196372e-03, 1.7402e-01, 3.7780e-03, - 2DIAGNOSTIC, 16, -7.468742257792e-01, 2.902565840992e-03, 1.7670e-01, 2.6782e-03, - 2DIAGNOSTIC, 17, -7.484038798221e-01, 1.925724454564e-03, 1.7960e-01, 2.9061e-03, - 2DIAGNOSTIC, 18, -7.496384433261e-01, 1.200893461099e-03, 1.8383e-01, 4.2300e-03, - 2DIAGNOSTIC, 19, -7.522060674182e-01, 1.071924694243e-03, 1.8696e-01, 3.1230e-03, - 2DIAGNOSTIC, 20, -7.553188112367e-01, 9.555743997510e-04, 1.9116e-01, 4.2081e-03, - 2DIAGNOSTIC, 21, -7.557325944299e-01, 8.317758392468e-04, 1.9397e-01, 2.8059e-03, - 2DIAGNOSTIC, 22, -7.562471254645e-01, 7.181116360949e-04, 1.9654e-01, 2.5730e-03, - 2DIAGNOSTIC, 23, -7.566143215174e-01, 5.881900732043e-04, 1.9943e-01, 2.8899e-03, - 2DIAGNOSTIC, 24, -7.567233166277e-01, 4.677916801002e-04, 2.0196e-01, 2.5232e-03, - 2DIAGNOSTIC, 25, -7.569565064772e-01, 3.825934263675e-04, 2.0449e-01, 2.5351e-03, - 2DIAGNOSTIC, 26, -7.571245700540e-01, 2.881527210227e-04, 2.0798e-01, 3.4931e-03, - 2DIAGNOSTIC, 27, -7.573080862829e-01, 1.994472914414e-04, 2.1054e-01, 2.5580e-03, - 2DIAGNOSTIC, 28, -7.573935266116e-01, 1.166357670549e-04, 2.1308e-01, 2.5370e-03, - 2DIAGNOSTIC, 29, -7.574942823851e-01, 6.383658545602e-05, 2.1630e-01, 3.2220e-03, - 2DIAGNOSTIC, 30, -7.575482557034e-01, 4.996709275380e-05, 2.1933e-01, 3.0301e-03, - 2DIAGNOSTIC, 31, -7.575688706979e-01, 3.772517417969e-05, 2.2221e-01, 2.8830e-03, - 2DIAGNOSTIC, 32, -7.575878262130e-01, 2.920908595015e-05, 2.2468e-01, 2.4619e-03, - 2DIAGNOSTIC, 33, -7.576315890858e-01, 2.341085713011e-05, 2.2714e-01, 2.4610e-03, - 2DIAGNOSTIC, 34, -7.577081888326e-01, 1.791015018649e-05, 2.2964e-01, 2.5032e-03, - 2DIAGNOSTIC, 35, -7.578560331420e-01, 1.531040898858e-05, 2.3211e-01, 2.4669e-03, - 2DIAGNOSTIC, 36, -7.586348517972e-01, 2.163472105782e-05, 2.3549e-01, 3.3820e-03, - 2DIAGNOSTIC, 37, -7.590842857035e-01, 3.205302555132e-05, 2.3791e-01, 2.4240e-03, - 2DIAGNOSTIC, 38, -7.602380497008e-01, 5.152112098895e-05, 2.4123e-01, 3.3190e-03, - 2DIAGNOSTIC, 39, -7.606184999113e-01, 6.972700303663e-05, 2.4372e-01, 2.4831e-03, - 2DIAGNOSTIC, 40, -7.615335817978e-01, 8.983532918099e-05, 2.4619e-01, 2.4710e-03, - 2DIAGNOSTIC, 41, -7.619941726298e-01, 1.048122750101e-04, 2.4895e-01, 2.7649e-03, - 2DIAGNOSTIC, 42, -7.622508520611e-01, 1.115790150842e-04, 2.5200e-01, 3.0451e-03, - 2DIAGNOSTIC, 43, -7.623261554632e-01, 1.085358787423e-04, 2.5473e-01, 2.7351e-03, - 2DIAGNOSTIC, 44, -7.626620870442e-01, 9.901053449385e-05, 2.5718e-01, 2.4478e-03, - 2DIAGNOSTIC, 45, -7.628170367406e-01, 8.293929659424e-05, 2.6004e-01, 2.8608e-03, - 2DIAGNOSTIC, 46, -7.629430603556e-01, 6.725932333870e-05, 2.6261e-01, 2.5671e-03, - 2DIAGNOSTIC, 47, -7.631714170386e-01, 5.131134767403e-05, 2.6547e-01, 2.8660e-03, - 2DIAGNOSTIC, 48, -7.633851511852e-01, 4.215956403972e-05, 2.6830e-01, 2.8291e-03, - 2DIAGNOSTIC, 49, -7.634723057800e-01, 3.289335398942e-05, 2.7106e-01, 2.7599e-03, - 2DIAGNOSTIC, 50, -7.635444251290e-01, 2.842325240424e-05, 2.7411e-01, 3.0439e-03, - 2DIAGNOSTIC, 51, -7.635554684363e-01, 2.500209461713e-05, 2.7652e-01, 2.4168e-03, - 2DIAGNOSTIC, 52, -7.635833125580e-01, 2.148647018082e-05, 2.7923e-01, 2.7089e-03, - 2DIAGNOSTIC, 53, -7.635954949120e-01, 1.666672743853e-05, 2.8196e-01, 2.7232e-03, - 2DIAGNOSTIC, 54, -7.636223427338e-01, 1.305057610755e-05, 2.8438e-01, 2.4211e-03, - 2DIAGNOSTIC, 55, -7.636838776696e-01, 9.886727199097e-06, 2.8800e-01, 3.6230e-03, - 2DIAGNOSTIC, 56, -7.637037658373e-01, 6.913204896694e-06, 2.9087e-01, 2.8658e-03, - 2DIAGNOSTIC, 57, -7.637120093124e-01, 4.999301594026e-06, 2.9367e-01, 2.8059e-03, - 2DIAGNOSTIC, 58, -7.637371293954e-01, 4.295257804605e-06, 2.9689e-01, 3.2179e-03, - 2DIAGNOSTIC, 59, -7.637515941965e-01, 3.898353273631e-06, 2.9959e-01, 2.7030e-03, - 2DIAGNOSTIC, 60, -7.637567781559e-01, 3.678911393017e-06, 3.0225e-01, 2.6619e-03, - 2DIAGNOSTIC, 61, -7.637654935836e-01, 3.286539826688e-06, 3.0487e-01, 2.6181e-03, - 2DIAGNOSTIC, 62, -7.637862203266e-01, 2.945547478986e-06, 3.0783e-01, 2.9581e-03, - 2DIAGNOSTIC, 63, -7.638259405090e-01, 2.693091827207e-06, 3.1105e-01, 3.2198e-03, - 2DIAGNOSTIC, 64, -7.641393084463e-01, 4.249840770770e-06, 3.1430e-01, 3.2480e-03, - 2DIAGNOSTIC, 65, -7.642405376599e-01, 6.302003034010e-06, 3.1717e-01, 2.8670e-03, - 2DIAGNOSTIC, 66, -7.643981329192e-01, 8.764829878709e-06, 3.2001e-01, 2.8450e-03, - 2DIAGNOSTIC, 67, -7.644415035429e-01, 1.065357189363e-05, 3.2290e-01, 2.8901e-03, - 2DIAGNOSTIC, 68, -7.644382662277e-01, 1.162927008645e-05, 3.2547e-01, 2.5711e-03, - 2DIAGNOSTIC, 69, -7.644528981897e-01, 1.164900809068e-05, 3.2839e-01, 2.9218e-03, - 2DIAGNOSTIC, 70, -7.644764043498e-01, 1.073262348132e-05, 3.3098e-01, 2.5859e-03, - 2DIAGNOSTIC, 71, -7.645456689538e-01, 9.276840601360e-06, 3.3384e-01, 2.8589e-03, - 2DIAGNOSTIC, 72, -7.645650074565e-01, 7.231484379417e-06, 3.3667e-01, 2.8350e-03, - 2DIAGNOSTIC, 73, -7.645872286656e-01, 4.887373237054e-06, 3.3954e-01, 2.8710e-03, - 2DIAGNOSTIC, 74, -7.646625070660e-01, 4.174444744119e-06, 3.4269e-01, 3.1459e-03, - 2DIAGNOSTIC, 75, -7.646873008435e-01, 3.726393779933e-06, 3.4591e-01, 3.2201e-03, - 2DIAGNOSTIC, 76, -7.646892736252e-01, 3.760385421556e-06, 3.4995e-01, 4.0379e-03, - 2DIAGNOSTIC, 77, -7.646982390350e-01, 3.736823351556e-06, 3.5367e-01, 3.7231e-03, - 2DIAGNOSTIC, 78, -7.646985182798e-01, 3.381579652705e-06, 3.5697e-01, 3.2978e-03, - 2DIAGNOSTIC, 79, -7.646815733458e-01, 2.734081172273e-06, 3.6008e-01, 3.1118e-03, - 2DIAGNOSTIC, 80, -7.646824445449e-01, 1.987326956230e-06, 3.6965e-01, 9.5670e-03, - 2DIAGNOSTIC, 81, -7.646824445432e-01, 1.433333182803e-06, 3.7626e-01, 6.6080e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.960101921535e-01, 1.797693134862e+308, 4.4457e-01, 6.8314e-02, - 2DIAGNOSTIC, 2, -5.964610016830e-01, 1.797693134862e+308, 4.5629e-01, 1.1724e-02, - 2DIAGNOSTIC, 3, -5.970538901763e-01, 1.797693134862e+308, 4.6785e-01, 1.1558e-02, - 2DIAGNOSTIC, 4, -5.975883550115e-01, 1.797693134862e+308, 4.7991e-01, 1.2056e-02, - 2DIAGNOSTIC, 5, -5.979314110167e-01, 1.797693134862e+308, 4.9156e-01, 1.1656e-02, - 2DIAGNOSTIC, 6, -5.985212518437e-01, 1.797693134862e+308, 5.0445e-01, 1.2883e-02, - 2DIAGNOSTIC, 7, -5.998685818344e-01, 1.797693134862e+308, 5.2655e-01, 2.2101e-02, - 2DIAGNOSTIC, 8, -5.998769335955e-01, 1.797693134862e+308, 5.3795e-01, 1.1405e-02, - 2DIAGNOSTIC, 9, -5.999282573138e-01, 1.797693134862e+308, 5.4940e-01, 1.1443e-02, - 2DIAGNOSTIC, 10, -6.000063079675e-01, 4.862261945900e-04, 5.6114e-01, 1.1740e-02, - 2DIAGNOSTIC, 11, -6.001158892907e-01, 3.917736628185e-04, 5.7303e-01, 1.1891e-02, - 2DIAGNOSTIC, 12, -6.002528596216e-01, 3.002535492163e-04, 5.8486e-01, 1.1836e-02, - 2DIAGNOSTIC, 13, -6.004068977064e-01, 2.229486555329e-04, 5.9664e-01, 1.1779e-02, - 2DIAGNOSTIC, 14, -6.006851568819e-01, 1.648146194534e-04, 6.0989e-01, 1.3247e-02, - 2DIAGNOSTIC, 15, -6.008553868448e-01, 1.156504000217e-04, 6.2305e-01, 1.3157e-02, - 2DIAGNOSTIC, 16, -6.010216590258e-01, 8.348862884590e-05, 6.3624e-01, 1.3189e-02, - 2DIAGNOSTIC, 17, -6.010678086880e-01, 8.649991487667e-05, 6.4818e-01, 1.1940e-02, - 2DIAGNOSTIC, 18, -6.011361013814e-01, 8.339237725783e-05, 6.6144e-01, 1.3264e-02, - 2DIAGNOSTIC, 19, -6.012194451824e-01, 7.632827322049e-05, 6.7514e-01, 1.3700e-02, - 2DIAGNOSTIC, 20, -6.013086733959e-01, 6.689830739282e-05, 6.8727e-01, 1.2128e-02, - 2DIAGNOSTIC, 21, -6.013466414032e-01, 5.558041596618e-05, 7.0220e-01, 1.4929e-02, - 2DIAGNOSTIC, 22, -6.013507680431e-01, 4.331667437451e-05, 7.1386e-01, 1.1667e-02, - 2DIAGNOSTIC, 23, -6.013563029821e-01, 3.142980814668e-05, 7.2498e-01, 1.1115e-02, - 2DIAGNOSTIC, 24, -6.013700413934e-01, 2.341310894922e-05, 7.3897e-01, 1.3996e-02, - 2DIAGNOSTIC, 25, -6.013787710093e-01, 1.725615464725e-05, 7.5015e-01, 1.1177e-02, - 2DIAGNOSTIC, 26, -6.013896716511e-01, 1.329665636712e-05, 7.6225e-01, 1.2099e-02, - 2DIAGNOSTIC, 27, -6.014183501078e-01, 9.811956461547e-06, 7.7674e-01, 1.4493e-02, - 2DIAGNOSTIC, 28, -6.014394292329e-01, 7.250653971329e-06, 7.9056e-01, 1.3817e-02, - 2DIAGNOSTIC, 29, -6.014530884496e-01, 5.834088098490e-06, 8.0394e-01, 1.3382e-02, - 2DIAGNOSTIC, 30, -6.016702251622e-01, 8.886618008554e-06, 8.1646e-01, 1.2514e-02, - 2DIAGNOSTIC, 31, -6.017459706637e-01, 1.264856802762e-05, 8.2907e-01, 1.2616e-02, - 2DIAGNOSTIC, 32, -6.017708655318e-01, 1.550637712184e-05, 8.4244e-01, 1.3363e-02, - 2DIAGNOSTIC, 33, -6.017964170405e-01, 1.730499067446e-05, 8.5484e-01, 1.2402e-02, - 2DIAGNOSTIC, 34, -6.018178922074e-01, 1.793708988901e-05, 8.6718e-01, 1.2345e-02, - 2DIAGNOSTIC, 35, -6.018997219063e-01, 1.809483328750e-05, 8.8575e-01, 1.8571e-02, - 2DIAGNOSTIC, 36, -6.019079143867e-01, 1.680558031447e-05, 8.9935e-01, 1.3597e-02, - 2DIAGNOSTIC, 37, -6.019245629337e-01, 1.469446773488e-05, 9.1250e-01, 1.3151e-02, - 2DIAGNOSTIC, 38, -6.019758225466e-01, 1.232572070802e-05, 9.2515e-01, 1.2647e-02, - 2DIAGNOSTIC, 39, -6.020982409458e-01, 1.055251688338e-05, 9.3937e-01, 1.4223e-02, - 2DIAGNOSTIC, 40, -6.021308523590e-01, 1.082856147583e-05, 9.5678e-01, 1.7410e-02, - 2DIAGNOSTIC, 41, -6.021605515990e-01, 1.136014133108e-05, 9.7157e-01, 1.4792e-02, - 2DIAGNOSTIC, 42, -6.021788248615e-01, 1.136356202531e-05, 9.8366e-01, 1.2091e-02, - 2DIAGNOSTIC, 43, -6.022266449982e-01, 1.115528672885e-05, 9.9899e-01, 1.5327e-02, - 2DIAGNOSTIC, 44, -6.022373072859e-01, 1.025264504577e-05, 1.0132e+00, 1.4226e-02, - 2DIAGNOSTIC, 45, -6.022455740039e-01, 9.428739936007e-06, 1.0267e+00, 1.3512e-02, - 2DIAGNOSTIC, 46, -6.022540893468e-01, 7.999934644370e-06, 1.0418e+00, 1.5113e-02, - 2DIAGNOSTIC, 47, -6.022584630955e-01, 6.143841059961e-06, 1.0538e+00, 1.1916e-02, - 2DIAGNOSTIC, 48, -6.022708214958e-01, 4.434836657321e-06, 1.0657e+00, 1.1945e-02, - 2DIAGNOSTIC, 49, -6.022811425627e-01, 3.707680443044e-06, 1.0797e+00, 1.3994e-02, - 2DIAGNOSTIC, 50, -6.022902710809e-01, 3.110147470547e-06, 1.0920e+00, 1.2332e-02, - 2DIAGNOSTIC, 51, -6.023361571776e-01, 3.000807368890e-06, 1.1089e+00, 1.6919e-02, - 2DIAGNOSTIC, 52, -6.023495716910e-01, 2.935085613293e-06, 1.1211e+00, 1.2147e-02, - 2DIAGNOSTIC, 53, -6.023635663934e-01, 3.200422801868e-06, 1.1332e+00, 1.2081e-02, - 2DIAGNOSTIC, 54, -6.024537861982e-01, 4.091438676745e-06, 1.1482e+00, 1.4998e-02, - 2DIAGNOSTIC, 55, -6.025094659442e-01, 5.141580505508e-06, 1.1669e+00, 1.8702e-02, - 2DIAGNOSTIC, 56, -6.025164085714e-01, 5.838430826157e-06, 1.1799e+00, 1.3067e-02, - 2DIAGNOSTIC, 57, -6.025382189880e-01, 6.233312748662e-06, 1.1929e+00, 1.3006e-02, - 2DIAGNOSTIC, 58, -6.025574727868e-01, 6.329285050309e-06, 1.2055e+00, 1.2573e-02, - 2DIAGNOSTIC, 59, -6.025807547405e-01, 6.123910287023e-06, 1.2214e+00, 1.5899e-02, - 2DIAGNOSTIC, 60, -6.025853175398e-01, 5.478048219949e-06, 1.2348e+00, 1.3360e-02, - 2DIAGNOSTIC, 61, -6.025903612367e-01, 4.782339493588e-06, 1.2467e+00, 1.1919e-02, - 2DIAGNOSTIC, 62, -6.026353452415e-01, 4.155239444022e-06, 1.2607e+00, 1.4018e-02, - 2DIAGNOSTIC, 63, -6.026771582427e-01, 3.590444678535e-06, 1.2809e+00, 2.0195e-02, - 2DIAGNOSTIC, 64, -6.026792070488e-01, 3.411481801215e-06, 1.2933e+00, 1.2396e-02, - 2DIAGNOSTIC, 65, -6.026836227685e-01, 3.404434465726e-06, 1.3057e+00, 1.2421e-02, - 2DIAGNOSTIC, 66, -6.026865678669e-01, 3.189817666661e-06, 1.3190e+00, 1.3224e-02, - 2DIAGNOSTIC, 67, -6.026887432633e-01, 2.882045754958e-06, 1.3317e+00, 1.2732e-02, - 2DIAGNOSTIC, 68, -6.026922808592e-01, 2.500348643264e-06, 1.3440e+00, 1.2325e-02, - 2DIAGNOSTIC, 69, -6.026963635333e-01, 2.124267138371e-06, 1.3568e+00, 1.2782e-02, - 2DIAGNOSTIC, 70, -6.027006370801e-01, 1.664740244945e-06, 1.3694e+00, 1.2654e-02, - 2DIAGNOSTIC, 71, -6.027357356615e-01, 1.363123990201e-06, 1.3908e+00, 2.1382e-02, - 2DIAGNOSTIC, 72, -6.027368761768e-01, 1.271004283007e-06, 1.4134e+00, 2.2545e-02, - 2DIAGNOSTIC, 73, -6.027368785552e-01, 1.374895409620e-06, 1.4238e+00, 1.0462e-02, - 2DIAGNOSTIC, 74, -6.027368768414e-01, 1.401271920418e-06, 1.4355e+00, 1.1656e-02, - 2DIAGNOSTIC, 75, -6.027368772130e-01, 1.359833248641e-06, 1.4741e+00, 3.8622e-02, - 2DIAGNOSTIC, 76, -6.027368772130e-01, 1.244047371641e-06, 1.4955e+00, 2.1395e-02, - 2DIAGNOSTIC, 77, -6.027368772130e-01, 1.064189505835e-06, 1.5091e+00, 1.3559e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.067011212508e-01, 1.797693134862e+308, 1.6929e+00, 1.8379e-01, - Elapsed time (stage 1): 1.7192e+00 - - -Total elapsed time: 3.1596e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:38:48 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 31 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 66 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 85.46% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 85.46% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[26448 5094 851 1130 449 0 14540 391 6586 5591 494 536 - 214 0 1361 0 0 0 0 0 0 354 0 0 - 0 0 0 0 0 0 0] -[117108 150393 14434 13562 3171 1729 5600 7447 3489 6942 - 920 986 906 1025 0 893 214 581 794 557 - 1182 0 430 287 0 0 222 417 0 0 - 0] -[ 2727 17020 8149 0 7632 0 0 298 0 457 0 0 - 0 2216 283 672 0 0 0 0 1743 0 0 5525 - 1175 29979 9041 0 3214 0 0] -[ 213 102311 216 1052 248 0 469 2680 936 11584 - 875 574 0 0 6321 0 0 262 629 319 - 0 0 0 3082 205 159083 354 1769 5641 237 - 758] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:48:37 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:48:43 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:31 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:31 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:31 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:42 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:45 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC003 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:52:57 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999998569488525 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:53:24 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:55:27 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:55:28 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:56:45 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:56:46 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x562247fd1d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [81.9449, 115.949, -129.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562247e48730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f245802a010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x562247fd5020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.051, 56.773, -120.373] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562247fdb0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f245496b010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x562247feb840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [81.9449, 115.949, -129.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562247fd7890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f244f563010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x562247fef3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.051, 56.773, -120.373] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562247fde130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f244bea4010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.773163155830e-01, 1.797693134862e+308, 2.4935e-01, 2.4935e-01, - 2DIAGNOSTIC, 2, -4.789385348667e-01, 1.797693134862e+308, 2.5056e-01, 1.2069e-03, - 2DIAGNOSTIC, 3, -4.807141504808e-01, 1.797693134862e+308, 2.5175e-01, 1.1890e-03, - 2DIAGNOSTIC, 4, -4.843593028875e-01, 1.797693134862e+308, 2.5301e-01, 1.2610e-03, - 2DIAGNOSTIC, 5, -4.880118058983e-01, 1.797693134862e+308, 2.5441e-01, 1.4060e-03, - 2DIAGNOSTIC, 6, -4.921879279379e-01, 1.797693134862e+308, 2.5609e-01, 1.6780e-03, - 2DIAGNOSTIC, 7, -4.921447485091e-01, 1.797693134862e+308, 2.5753e-01, 1.4429e-03, - 2DIAGNOSTIC, 8, -4.919912412242e-01, 1.797693134862e+308, 2.5883e-01, 1.2970e-03, - 2DIAGNOSTIC, 9, -4.918958305920e-01, 1.797693134862e+308, 2.6041e-01, 1.5740e-03, - 2DIAGNOSTIC, 10, -4.917542327575e-01, 2.221164808787e-03, 2.6208e-01, 1.6768e-03, - 2DIAGNOSTIC, 11, -4.916617008134e-01, 1.567361188852e-03, 2.6367e-01, 1.5841e-03, - 2DIAGNOSTIC, 12, -4.918240282220e-01, 9.716921753590e-04, 2.6521e-01, 1.5430e-03, - 2DIAGNOSTIC, 13, -4.922774051200e-01, 4.808690403452e-04, 2.6672e-01, 1.5140e-03, - 2DIAGNOSTIC, 14, -4.925413890320e-01, 1.770840330376e-04, 2.6846e-01, 1.7402e-03, - 2DIAGNOSTIC, 15, -4.925396997411e-01, 3.510781473844e-05, 2.7060e-01, 2.1360e-03, - 2DIAGNOSTIC, 16, -4.923849078253e-01, 5.445117068280e-05, 2.7277e-01, 2.1660e-03, - 2DIAGNOSTIC, 17, -4.925305944694e-01, 7.036927393843e-05, 2.7487e-01, 2.1071e-03, - 2DIAGNOSTIC, 18, -4.914695496878e-01, 3.848729827176e-05, 2.7674e-01, 1.8680e-03, - 2DIAGNOSTIC, 19, -4.983555249183e-01, 2.148593144777e-04, 2.7916e-01, 2.4209e-03, - 2DIAGNOSTIC, 20, -5.074460036660e-01, 6.067018426185e-04, 2.8169e-01, 2.5258e-03, - 2DIAGNOSTIC, 21, -5.106644834151e-01, 9.843582655533e-04, 2.8396e-01, 2.2709e-03, - 2DIAGNOSTIC, 22, -5.103466261275e-01, 1.233965748667e-03, 2.8554e-01, 1.5829e-03, - 2DIAGNOSTIC, 23, -5.116771475760e-01, 1.394954376875e-03, 2.8723e-01, 1.6880e-03, - 2DIAGNOSTIC, 24, -5.118439206450e-01, 1.418685885017e-03, 2.8873e-01, 1.4958e-03, - 2DIAGNOSTIC, 25, -5.106060935003e-01, 1.274690337449e-03, 2.9048e-01, 1.7500e-03, - 2DIAGNOSTIC, 26, -5.106618501510e-01, 1.021788689844e-03, 2.9198e-01, 1.5080e-03, - 2DIAGNOSTIC, 27, -5.107237329569e-01, 7.015799028739e-04, 2.9345e-01, 1.4670e-03, - 2DIAGNOSTIC, 28, -5.118496454893e-01, 3.386054993662e-04, 2.9558e-01, 2.1300e-03, - 2DIAGNOSTIC, 29, -5.105642137177e-01, 7.488411471123e-05, 2.9731e-01, 1.7250e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.877260522987e-01, 1.797693134862e+308, 5.4935e-01, 2.5204e-01, - 2DIAGNOSTIC, 2, -3.883300346106e-01, 1.797693134862e+308, 5.5143e-01, 2.0859e-03, - 2DIAGNOSTIC, 3, -3.890133707052e-01, 1.797693134862e+308, 5.5351e-01, 2.0730e-03, - 2DIAGNOSTIC, 4, -3.900797848050e-01, 1.797693134862e+308, 5.5564e-01, 2.1310e-03, - 2DIAGNOSTIC, 5, -3.937412121695e-01, 1.797693134862e+308, 5.5787e-01, 2.2349e-03, - 2DIAGNOSTIC, 6, -3.977663519451e-01, 1.797693134862e+308, 5.6056e-01, 2.6901e-03, - 2DIAGNOSTIC, 7, -4.039337653998e-01, 1.797693134862e+308, 5.6328e-01, 2.7170e-03, - 2DIAGNOSTIC, 8, -4.091425091627e-01, 1.797693134862e+308, 5.6678e-01, 3.5000e-03, - 2DIAGNOSTIC, 9, -4.109624173524e-01, 1.797693134862e+308, 5.6919e-01, 2.4059e-03, - 2DIAGNOSTIC, 10, -4.112737896742e-01, 4.612910889357e-03, 5.7153e-01, 2.3439e-03, - 2DIAGNOSTIC, 11, -4.107075453289e-01, 4.188775235065e-03, 5.7382e-01, 2.2950e-03, - 2DIAGNOSTIC, 12, -4.114636412073e-01, 3.540516949233e-03, 5.7681e-01, 2.9829e-03, - 2DIAGNOSTIC, 13, -4.120959560680e-01, 2.743770160573e-03, 5.7915e-01, 2.3482e-03, - 2DIAGNOSTIC, 14, -4.126680246188e-01, 1.896445407693e-03, 5.8178e-01, 2.6219e-03, - 2DIAGNOSTIC, 15, -4.134785790322e-01, 1.204228933711e-03, 5.8607e-01, 4.2970e-03, - 2DIAGNOSTIC, 16, -4.136359940302e-01, 6.710118018737e-04, 5.8846e-01, 2.3820e-03, - 2DIAGNOSTIC, 17, -4.138258901005e-01, 3.985162125310e-04, 5.9110e-01, 2.6422e-03, - 2DIAGNOSTIC, 18, -4.141390670952e-01, 3.333626451766e-04, 5.9385e-01, 2.7521e-03, - 2DIAGNOSTIC, 19, -4.142220489821e-01, 3.139482800401e-04, 5.9643e-01, 2.5759e-03, - 2DIAGNOSTIC, 20, -4.142434953541e-01, 2.800256901677e-04, 5.9870e-01, 2.2750e-03, - 2DIAGNOSTIC, 21, -4.143702652824e-01, 2.086498365848e-04, 6.0145e-01, 2.7480e-03, - 2DIAGNOSTIC, 22, -4.145160023857e-01, 1.530750030964e-04, 6.0386e-01, 2.4111e-03, - 2DIAGNOSTIC, 23, -4.146538018236e-01, 1.112606946963e-04, 6.0645e-01, 2.5940e-03, - 2DIAGNOSTIC, 24, -4.147532329387e-01, 8.162642822152e-05, 6.0876e-01, 2.3041e-03, - 2DIAGNOSTIC, 25, -4.148704701740e-01, 7.284223434175e-05, 6.1110e-01, 2.3451e-03, - 2DIAGNOSTIC, 26, -4.153126338184e-01, 7.401263210710e-05, 6.1346e-01, 2.3541e-03, - 2DIAGNOSTIC, 27, -4.150847180755e-01, 6.673215232866e-05, 6.1583e-01, 2.3720e-03, - 2DIAGNOSTIC, 28, -4.182672073311e-01, 1.409327432932e-04, 6.1975e-01, 3.9251e-03, - 2DIAGNOSTIC, 29, -4.185206723738e-01, 2.027102200902e-04, 6.2205e-01, 2.3000e-03, - 2DIAGNOSTIC, 30, -4.188746550056e-01, 2.504645798716e-04, 6.2452e-01, 2.4691e-03, - 2DIAGNOSTIC, 31, -4.194660564061e-01, 2.883737950128e-04, 6.2683e-01, 2.3050e-03, - 2DIAGNOSTIC, 32, -4.213706788622e-01, 3.406324404392e-04, 6.3047e-01, 3.6430e-03, - 2DIAGNOSTIC, 33, -4.217210514126e-01, 3.658127999322e-04, 6.3278e-01, 2.3081e-03, - 2DIAGNOSTIC, 34, -4.219756218059e-01, 3.621325629834e-04, 6.3543e-01, 2.6479e-03, - 2DIAGNOSTIC, 35, -4.223337204630e-01, 3.348575841570e-04, 6.3804e-01, 2.6088e-03, - 2DIAGNOSTIC, 36, -4.225348192283e-01, 2.903150950975e-04, 6.4040e-01, 2.3589e-03, - 2DIAGNOSTIC, 37, -4.233193650140e-01, 2.289473799972e-04, 6.4301e-01, 2.6190e-03, - 2DIAGNOSTIC, 38, -4.239810784170e-01, 2.186165259643e-04, 6.4531e-01, 2.2998e-03, - 2DIAGNOSTIC, 39, -4.254164149814e-01, 2.181988364355e-04, 6.4796e-01, 2.6469e-03, - 2DIAGNOSTIC, 40, -4.273574700855e-01, 2.363130580311e-04, 6.5029e-01, 2.3270e-03, - 2DIAGNOSTIC, 41, -4.286625399480e-01, 2.615117030944e-04, 6.5329e-01, 2.9972e-03, - 2DIAGNOSTIC, 42, -4.295496895574e-01, 3.061539288610e-04, 6.5629e-01, 3.0060e-03, - 2DIAGNOSTIC, 43, -4.308232800626e-01, 3.454560497993e-04, 6.5904e-01, 2.7440e-03, - 2DIAGNOSTIC, 44, -4.447975249808e-01, 5.709513858564e-04, 6.6169e-01, 2.6531e-03, - 2DIAGNOSTIC, 45, -4.460587099638e-01, 7.497870628000e-04, 6.6403e-01, 2.3410e-03, - 2DIAGNOSTIC, 46, -4.472052082336e-01, 8.706143259849e-04, 6.6633e-01, 2.3010e-03, - 2DIAGNOSTIC, 47, -4.485980394306e-01, 9.374514329746e-04, 6.6994e-01, 3.6130e-03, - 2DIAGNOSTIC, 48, -4.491588174762e-01, 9.279173399346e-04, 6.7226e-01, 2.3179e-03, - 2DIAGNOSTIC, 49, -4.501272517025e-01, 8.599337808891e-04, 6.7456e-01, 2.2991e-03, - 2DIAGNOSTIC, 50, -4.511100626018e-01, 7.511927754064e-04, 6.7715e-01, 2.5880e-03, - 2DIAGNOSTIC, 51, -4.515773292768e-01, 6.011365830110e-04, 6.7940e-01, 2.2528e-03, - 2DIAGNOSTIC, 52, -4.517247995390e-01, 4.150177898789e-04, 6.8167e-01, 2.2650e-03, - 2DIAGNOSTIC, 53, -4.526787073814e-01, 2.204467957698e-04, 6.8427e-01, 2.6040e-03, - 2DIAGNOSTIC, 54, -4.545976873433e-01, 2.107108361636e-04, 6.8779e-01, 3.5200e-03, - 2DIAGNOSTIC, 55, -4.551479683570e-01, 2.025474474204e-04, 6.9007e-01, 2.2810e-03, - 2DIAGNOSTIC, 56, -4.553622039245e-01, 1.915997176771e-04, 6.9234e-01, 2.2721e-03, - 2DIAGNOSTIC, 57, -4.558034417396e-01, 1.847785595671e-04, 6.9465e-01, 2.3060e-03, - 2DIAGNOSTIC, 58, -4.562964414164e-01, 1.723355838903e-04, 6.9728e-01, 2.6340e-03, - 2DIAGNOSTIC, 59, -4.566917717750e-01, 1.586234360387e-04, 6.9959e-01, 2.3091e-03, - 2DIAGNOSTIC, 60, -4.579405250794e-01, 1.549815487838e-04, 7.0195e-01, 2.3551e-03, - 2DIAGNOSTIC, 61, -4.639155843402e-01, 2.072759214852e-04, 7.0436e-01, 2.4099e-03, - 2DIAGNOSTIC, 62, -4.679537758868e-01, 2.812138644197e-04, 7.0709e-01, 2.7351e-03, - 2DIAGNOSTIC, 63, -4.719524320190e-01, 3.770784894775e-04, 7.0980e-01, 2.7120e-03, - 2DIAGNOSTIC, 64, -4.714740773419e-01, 4.485476674561e-04, 7.1249e-01, 2.6851e-03, - 2DIAGNOSTIC, 65, -4.751612401352e-01, 5.186500027683e-04, 7.1517e-01, 2.6779e-03, - 2DIAGNOSTIC, 66, -4.874058870303e-01, 6.597214394262e-04, 7.1787e-01, 2.7070e-03, - 2DIAGNOSTIC, 67, -4.864470270253e-01, 7.235193845593e-04, 7.2024e-01, 2.3701e-03, - 2DIAGNOSTIC, 68, -5.041974341823e-01, 8.946289608107e-04, 7.2379e-01, 3.5441e-03, - 2DIAGNOSTIC, 69, -5.148172019672e-01, 1.076339368503e-03, 7.2688e-01, 3.0930e-03, - 2DIAGNOSTIC, 70, -5.155157504920e-01, 1.164130947797e-03, 7.3107e-01, 4.1881e-03, - 2DIAGNOSTIC, 71, -5.195862533586e-01, 1.230425126341e-03, 7.3473e-01, 3.6600e-03, - 2DIAGNOSTIC, 72, -5.228312442156e-01, 1.241229302571e-03, 7.3812e-01, 3.3948e-03, - 2DIAGNOSTIC, 73, -5.226918178396e-01, 1.165716176695e-03, 7.4053e-01, 2.4080e-03, - 2DIAGNOSTIC, 74, -5.253103886399e-01, 9.981921244139e-04, 7.4322e-01, 2.6829e-03, - 2DIAGNOSTIC, 75, -5.265375454146e-01, 7.809226136707e-04, 7.4550e-01, 2.2850e-03, - 2DIAGNOSTIC, 76, -5.268217310213e-01, 6.044743066897e-04, 7.4901e-01, 3.5081e-03, - 2DIAGNOSTIC, 77, -5.271939718887e-01, 3.671654635075e-04, 7.5236e-01, 3.3541e-03, - 2DIAGNOSTIC, 78, -5.287122188421e-01, 2.584113172576e-04, 7.5541e-01, 3.0499e-03, - 2DIAGNOSTIC, 79, -5.375050853601e-01, 2.853654134033e-04, 7.5842e-01, 3.0038e-03, - 2DIAGNOSTIC, 80, -5.396871892525e-01, 3.043305752792e-04, 7.6162e-01, 3.2051e-03, - 2DIAGNOSTIC, 81, -5.406314953626e-01, 3.329109982823e-04, 7.6447e-01, 2.8501e-03, - 2DIAGNOSTIC, 82, -5.421783636954e-01, 3.671456683855e-04, 7.6708e-01, 2.6040e-03, - 2DIAGNOSTIC, 83, -5.455942051518e-01, 3.891468741734e-04, 7.7004e-01, 2.9609e-03, - 2DIAGNOSTIC, 84, -5.547184462250e-01, 4.593637884014e-04, 7.7317e-01, 3.1290e-03, - 2DIAGNOSTIC, 85, -5.951634149138e-01, 7.894774088523e-04, 7.7653e-01, 3.3660e-03, - 2DIAGNOSTIC, 86, -6.434246845827e-01, 1.379363636285e-03, 7.7968e-01, 3.1500e-03, - 2DIAGNOSTIC, 87, -6.900342561484e-01, 2.146505215491e-03, 7.8196e-01, 2.2800e-03, - 2DIAGNOSTIC, 88, -6.986401182373e-01, 2.748916872455e-03, 7.8519e-01, 3.2239e-03, - 2DIAGNOSTIC, 89, -7.041290420313e-01, 3.170109490703e-03, 7.8745e-01, 2.2621e-03, - 2DIAGNOSTIC, 90, -7.069449056698e-01, 3.305061056264e-03, 7.8981e-01, 2.3670e-03, - 2DIAGNOSTIC, 91, -7.122697533508e-01, 3.153341216824e-03, 7.9222e-01, 2.4059e-03, - 2DIAGNOSTIC, 92, -7.273140997762e-01, 2.808984872917e-03, 7.9601e-01, 3.7882e-03, - 2DIAGNOSTIC, 93, -7.324222859451e-01, 2.262913659148e-03, 7.9863e-01, 2.6259e-03, - 2DIAGNOSTIC, 94, -7.377114861977e-01, 1.609496896523e-03, 8.0118e-01, 2.5470e-03, - 2DIAGNOSTIC, 95, -7.385109291166e-01, 1.076332740830e-03, 8.0374e-01, 2.5542e-03, - 2DIAGNOSTIC, 96, -7.397770853016e-01, 7.539564592852e-04, 8.0724e-01, 3.5090e-03, - 2DIAGNOSTIC, 97, -7.395191504086e-01, 6.475039965688e-04, 8.0946e-01, 2.2120e-03, - 2DIAGNOSTIC, 98, -7.439231173707e-01, 5.585366981580e-04, 8.1171e-01, 2.2490e-03, - 2DIAGNOSTIC, 99, -7.462896821971e-01, 4.646673226065e-04, 8.1421e-01, 2.5041e-03, - 2DIAGNOSTIC, 100, -7.478170505894e-01, 3.543285153356e-04, 8.1651e-01, 2.2969e-03, - 2DIAGNOSTIC, 101, -7.483060651197e-01, 2.448563192890e-04, 8.1922e-01, 2.7120e-03, - 2DIAGNOSTIC, 102, -7.493897914610e-01, 2.052345882297e-04, 8.2159e-01, 2.3720e-03, - 2DIAGNOSTIC, 103, -7.504519447493e-01, 1.799882139079e-04, 8.2431e-01, 2.7189e-03, - 2DIAGNOSTIC, 104, -7.514308551427e-01, 1.718321847218e-04, 8.2721e-01, 2.9011e-03, - 2DIAGNOSTIC, 105, -7.537339451489e-01, 1.640193605312e-04, 8.2963e-01, 2.4209e-03, - 2DIAGNOSTIC, 106, -7.548493516967e-01, 1.534852425311e-04, 8.3200e-01, 2.3670e-03, - 2DIAGNOSTIC, 107, -7.578965943820e-01, 1.425842333156e-04, 8.3502e-01, 3.0200e-03, - 2DIAGNOSTIC, 108, -7.594062477696e-01, 1.481690517909e-04, 8.3861e-01, 3.5889e-03, - 2DIAGNOSTIC, 109, -7.603383381919e-01, 1.559001131946e-04, 8.4088e-01, 2.2759e-03, - 2DIAGNOSTIC, 110, -7.603270138806e-01, 1.560681774558e-04, 8.4317e-01, 2.2869e-03, - 2DIAGNOSTIC, 111, -7.606904900784e-01, 1.453960423186e-04, 8.4576e-01, 2.5899e-03, - 2DIAGNOSTIC, 112, -7.608669012300e-01, 1.269693510463e-04, 8.4864e-01, 2.8780e-03, - 2DIAGNOSTIC, 113, -7.610021216102e-01, 1.024507848090e-04, 8.5121e-01, 2.5680e-03, - 2DIAGNOSTIC, 114, -7.613891330368e-01, 7.509946096860e-05, 8.5379e-01, 2.5871e-03, - 2DIAGNOSTIC, 115, -7.610812964430e-01, 5.067250572995e-05, 8.5608e-01, 2.2900e-03, - 2DIAGNOSTIC, 116, -7.610191047390e-01, 2.666902640228e-05, 8.5834e-01, 2.2550e-03, - 2DIAGNOSTIC, 117, -7.612534222604e-01, 1.559133060567e-05, 8.6063e-01, 2.2900e-03, - 2DIAGNOSTIC, 118, -7.615220090381e-01, 1.118555986695e-05, 8.6306e-01, 2.4331e-03, - 2DIAGNOSTIC, 119, -7.616015129486e-01, 1.034384627274e-05, 8.6614e-01, 3.0830e-03, - 2DIAGNOSTIC, 120, -7.616839315132e-01, 8.884738723888e-06, 8.6986e-01, 3.7131e-03, - 2DIAGNOSTIC, 121, -7.617096184193e-01, 8.367137827462e-06, 8.7220e-01, 2.3429e-03, - 2DIAGNOSTIC, 122, -7.616333774912e-01, 7.488714534511e-06, 8.7457e-01, 2.3739e-03, - 2DIAGNOSTIC, 123, -7.616583384232e-01, 6.549426187805e-06, 8.7698e-01, 2.4021e-03, - 2DIAGNOSTIC, 124, -7.618746561309e-01, 7.610912184930e-06, 8.7968e-01, 2.7020e-03, - 2DIAGNOSTIC, 125, -7.619192591945e-01, 6.850062808535e-06, 8.8208e-01, 2.4040e-03, - 2DIAGNOSTIC, 126, -7.618214160784e-01, 4.814203985487e-06, 8.8448e-01, 2.4011e-03, - 2DIAGNOSTIC, 127, -7.620426381627e-01, 4.259314238959e-06, 8.8823e-01, 3.7491e-03, - 2DIAGNOSTIC, 128, -7.619441201612e-01, 3.989399161602e-06, 8.9061e-01, 2.3820e-03, - 2DIAGNOSTIC, 129, -7.621266474935e-01, 4.404978045373e-06, 8.9302e-01, 2.4092e-03, - 2DIAGNOSTIC, 130, -7.621718805711e-01, 4.901723470868e-06, 8.9572e-01, 2.6910e-03, - 2DIAGNOSTIC, 131, -7.621993979145e-01, 5.177403640770e-06, 8.9803e-01, 2.3189e-03, - 2DIAGNOSTIC, 132, -7.623665414987e-01, 5.339051263386e-06, 9.0113e-01, 3.0971e-03, - 2DIAGNOSTIC, 133, -7.624870738442e-01, 5.527777958061e-06, 9.0506e-01, 3.9279e-03, - 2DIAGNOSTIC, 134, -7.626311472715e-01, 6.564009772078e-06, 9.0756e-01, 2.4960e-03, - 2DIAGNOSTIC, 135, -7.626390979196e-01, 7.181058958044e-06, 9.1008e-01, 2.5210e-03, - 2DIAGNOSTIC, 136, -7.626631488955e-01, 6.838697518793e-06, 9.1287e-01, 2.7890e-03, - 2DIAGNOSTIC, 137, -7.627665773376e-01, 7.080116470113e-06, 9.1657e-01, 3.7079e-03, - 2DIAGNOSTIC, 138, -7.631027254692e-01, 7.490031769648e-06, 9.2098e-01, 4.4060e-03, - 2DIAGNOSTIC, 139, -7.628264127035e-01, 6.825643888705e-06, 9.2333e-01, 2.3460e-03, - 2DIAGNOSTIC, 140, -7.628318727285e-01, 5.780895408054e-06, 9.2642e-01, 3.0930e-03, - 2DIAGNOSTIC, 141, -7.628426294931e-01, 4.361413951456e-06, 9.2996e-01, 3.5410e-03, - 2DIAGNOSTIC, 142, -7.627245476375e-01, 2.714123386665e-06, 9.3286e-01, 2.9051e-03, - 2DIAGNOSTIC, 143, -7.630579507777e-01, 2.421303864108e-06, 9.3631e-01, 3.4499e-03, - 2DIAGNOSTIC, 144, -7.628696747224e-01, 1.756541564930e-06, 9.3894e-01, 2.6290e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.230341864342e-01, 1.797693134862e+308, 1.2155e+00, 2.7659e-01, - 2DIAGNOSTIC, 2, -6.233269766004e-01, 1.797693134862e+308, 1.2281e+00, 1.2552e-02, - 2DIAGNOSTIC, 3, -6.234689447863e-01, 1.797693134862e+308, 1.2406e+00, 1.2466e-02, - 2DIAGNOSTIC, 4, -6.236494138504e-01, 1.797693134862e+308, 1.2530e+00, 1.2483e-02, - 2DIAGNOSTIC, 5, -6.237608787939e-01, 1.797693134862e+308, 1.2713e+00, 1.8225e-02, - 2DIAGNOSTIC, 6, -6.238154536400e-01, 1.797693134862e+308, 1.2848e+00, 1.3521e-02, - 2DIAGNOSTIC, 7, -6.237877332546e-01, 1.797693134862e+308, 1.2983e+00, 1.3556e-02, - 2DIAGNOSTIC, 8, -6.238367113397e-01, 1.797693134862e+308, 1.3122e+00, 1.3873e-02, - 2DIAGNOSTIC, 9, -6.238152838336e-01, 1.797693134862e+308, 1.3241e+00, 1.1901e-02, - 2DIAGNOSTIC, 10, -6.238082048220e-01, 7.301936415856e-05, 1.3378e+00, 1.3701e-02, - 2DIAGNOSTIC, 11, -6.238056965971e-01, 4.110555733536e-05, 1.3514e+00, 1.3573e-02, - 2DIAGNOSTIC, 12, -6.238029987776e-01, 2.208855189338e-05, 1.3689e+00, 1.7547e-02, - 2DIAGNOSTIC, 13, -6.238177636328e-01, 9.609042703765e-06, 1.3842e+00, 1.5257e-02, - 2DIAGNOSTIC, 14, -6.238055645027e-01, 3.632575111365e-06, 1.3986e+00, 1.4382e-02, - 2DIAGNOSTIC, 15, -6.237927216726e-01, 1.312660437944e-06, 1.4114e+00, 1.2863e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.335540735263e-01, 1.797693134862e+308, 1.9439e+00, 5.3250e-01, - 2DIAGNOSTIC, 2, -5.337525783842e-01, 1.797693134862e+308, 2.0422e+00, 9.8279e-02, - 2DIAGNOSTIC, 3, -5.338690779530e-01, 1.797693134862e+308, 2.1354e+00, 9.3188e-02, - 2DIAGNOSTIC, 4, -5.340233925067e-01, 1.797693134862e+308, 2.2342e+00, 9.8848e-02, - 2DIAGNOSTIC, 5, -5.342307206642e-01, 1.797693134862e+308, 2.3888e+00, 1.5457e-01, - 2DIAGNOSTIC, 6, -5.342961933843e-01, 1.797693134862e+308, 2.4984e+00, 1.0962e-01, - 2DIAGNOSTIC, 7, -5.342956367734e-01, 1.797693134862e+308, 2.6069e+00, 1.0843e-01, - 2DIAGNOSTIC, 8, -5.342938305545e-01, 1.797693134862e+308, 2.7130e+00, 1.0612e-01, - 2DIAGNOSTIC, 9, -5.342955433020e-01, 1.797693134862e+308, 2.8153e+00, 1.0233e-01, - 2DIAGNOSTIC, 10, -5.342959630843e-01, 9.111003183210e-05, 2.9366e+00, 1.2130e-01, - 2DIAGNOSTIC, 11, -5.342963038137e-01, 5.789971913786e-05, 3.0274e+00, 9.0741e-02, - 2DIAGNOSTIC, 12, -5.343015362378e-01, 3.440347103013e-05, 3.1372e+00, 1.0986e-01, - 2DIAGNOSTIC, 13, -5.343074516000e-01, 1.662700967923e-05, 3.2470e+00, 1.0976e-01, - 2DIAGNOSTIC, 14, -5.343181719312e-01, 6.174096340836e-06, 3.3571e+00, 1.1011e-01, - 2DIAGNOSTIC, 15, -5.343252819355e-01, 4.291760517569e-06, 3.4694e+00, 1.1235e-01, - 2DIAGNOSTIC, 16, -5.343302229046e-01, 4.787816823393e-06, 3.5770e+00, 1.0753e-01, - 2DIAGNOSTIC, 17, -5.343312732972e-01, 4.985969838701e-06, 3.6834e+00, 1.0649e-01, - 2DIAGNOSTIC, 18, -5.343443800858e-01, 5.206831928763e-06, 3.7729e+00, 8.9444e-02, - 2DIAGNOSTIC, 19, -5.343586731031e-01, 5.521756751441e-06, 3.8688e+00, 9.5907e-02, - 2DIAGNOSTIC, 20, -5.343804856122e-01, 6.032070951630e-06, 3.9511e+00, 8.2352e-02, - 2DIAGNOSTIC, 21, -5.344646641431e-01, 8.214618633609e-06, 4.0428e+00, 9.1688e-02, - 2DIAGNOSTIC, 22, -5.345498622368e-01, 1.171328882432e-05, 4.1503e+00, 1.0751e-01, - 2DIAGNOSTIC, 23, -5.346365763470e-01, 1.605488330955e-05, 4.3012e+00, 1.5082e-01, - 2DIAGNOSTIC, 24, -5.346542872659e-01, 1.927645890064e-05, 4.4716e+00, 1.7042e-01, - 2DIAGNOSTIC, 25, -5.346490132260e-01, 2.062075848552e-05, 4.5953e+00, 1.2369e-01, - 2DIAGNOSTIC, 26, -5.346494874688e-01, 2.015918402538e-05, 4.7016e+00, 1.0631e-01, - 2DIAGNOSTIC, 27, -5.346499452407e-01, 1.794423584027e-05, 4.7929e+00, 9.1352e-02, - 2DIAGNOSTIC, 28, -5.346492738439e-01, 1.452890863059e-05, 4.8847e+00, 9.1763e-02, - 2DIAGNOSTIC, 29, -5.346518695829e-01, 1.041638767884e-05, 4.9884e+00, 1.0374e-01, - 2DIAGNOSTIC, 30, -5.346525864923e-01, 6.096024756513e-06, 5.0795e+00, 9.1034e-02, - 2DIAGNOSTIC, 31, -5.346523396514e-01, 2.999114826437e-06, 5.1706e+00, 9.1087e-02, - 2DIAGNOSTIC, 32, -5.346569486052e-01, 1.363256126700e-06, 5.2622e+00, 9.1662e-02, - 2DIAGNOSTIC, 33, -5.346566426339e-01, 1.173178777215e-06, 5.3607e+00, 9.8506e-02, - 2DIAGNOSTIC, 34, -5.346602980707e-01, 1.311520755755e-06, 5.4733e+00, 1.1254e-01, - 2DIAGNOSTIC, 35, -5.346699809366e-01, 1.472154947921e-06, 5.5851e+00, 1.1182e-01, - 2DIAGNOSTIC, 36, -5.346725243663e-01, 1.611478062092e-06, 5.7099e+00, 1.2478e-01, - 2DIAGNOSTIC, 37, -5.346758075021e-01, 1.729099858253e-06, 5.8188e+00, 1.0894e-01, - 2DIAGNOSTIC, 38, -5.346735521569e-01, 1.716793919221e-06, 5.9437e+00, 1.2489e-01, - 2DIAGNOSTIC, 39, -5.346770668758e-01, 1.706004790065e-06, 6.0652e+00, 1.2146e-01, - 2DIAGNOSTIC, 40, -5.346759193904e-01, 1.602455147715e-06, 6.1688e+00, 1.0369e-01, - 2DIAGNOSTIC, 41, -5.346734042131e-01, 1.389459791345e-06, 6.2778e+00, 1.0896e-01, - 2DIAGNOSTIC, 42, -5.346750956789e-01, 1.211243184834e-06, 6.3730e+00, 9.5204e-02, - Elapsed time (stage 0): 6.5272e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.621449821719e-01, 1.797693134862e+308, 2.1932e-01, 2.1932e-01, - 2DIAGNOSTIC, 2, -8.646714394798e-01, 1.797693134862e+308, 2.2067e-01, 1.3499e-03, - 2DIAGNOSTIC, 3, -8.686811375945e-01, 1.797693134862e+308, 2.2194e-01, 1.2679e-03, - 2DIAGNOSTIC, 4, -8.735112043332e-01, 1.797693134862e+308, 2.2319e-01, 1.2541e-03, - 2DIAGNOSTIC, 5, -8.853440432567e-01, 1.797693134862e+308, 2.2449e-01, 1.3011e-03, - 2DIAGNOSTIC, 6, -9.005879105345e-01, 1.797693134862e+308, 2.2576e-01, 1.2720e-03, - 2DIAGNOSTIC, 7, -9.228017645161e-01, 1.797693134862e+308, 2.2738e-01, 1.6119e-03, - 2DIAGNOSTIC, 8, -9.459746776859e-01, 1.797693134862e+308, 2.2893e-01, 1.5569e-03, - 2DIAGNOSTIC, 9, -9.510152415280e-01, 1.797693134862e+308, 2.3075e-01, 1.8129e-03, - 2DIAGNOSTIC, 10, -9.609188469036e-01, 7.992690755022e-03, 2.3249e-01, 1.7412e-03, - 2DIAGNOSTIC, 11, -9.684213296097e-01, 7.693931357244e-03, 2.3401e-01, 1.5280e-03, - 2DIAGNOSTIC, 12, -9.829752891794e-01, 7.184630943166e-03, 2.3622e-01, 2.2070e-03, - 2DIAGNOSTIC, 13, -9.823134759887e-01, 6.184393224433e-03, 2.3797e-01, 1.7450e-03, - 2DIAGNOSTIC, 14, -9.823027393358e-01, 4.889712575416e-03, 2.3982e-01, 1.8501e-03, - 2DIAGNOSTIC, 15, -9.811398095012e-01, 3.555721618162e-03, 2.4136e-01, 1.5411e-03, - 2DIAGNOSTIC, 16, -9.814952338110e-01, 2.360755131436e-03, 2.4281e-01, 1.4539e-03, - 2DIAGNOSTIC, 17, -9.833049356400e-01, 1.513055551935e-03, 2.4467e-01, 1.8630e-03, - 2DIAGNOSTIC, 18, -9.868888783560e-01, 1.074953150179e-03, 2.4708e-01, 2.4030e-03, - 2DIAGNOSTIC, 19, -9.864661442395e-01, 6.591387964870e-04, 2.4908e-01, 2.0010e-03, - 2DIAGNOSTIC, 20, -9.864720268716e-01, 3.760336636071e-04, 2.5060e-01, 1.5190e-03, - 2DIAGNOSTIC, 21, -9.866807062575e-01, 1.912617761270e-04, 2.5209e-01, 1.4899e-03, - 2DIAGNOSTIC, 22, -9.870143713362e-01, 2.086438887992e-04, 2.5351e-01, 1.4241e-03, - 2DIAGNOSTIC, 23, -9.875351163981e-01, 2.022173877820e-04, 2.5503e-01, 1.5178e-03, - 2DIAGNOSTIC, 24, -9.882982212279e-01, 1.875923736380e-04, 2.5658e-01, 1.5512e-03, - 2DIAGNOSTIC, 25, -9.893253461080e-01, 1.558195025772e-04, 2.5815e-01, 1.5719e-03, - 2DIAGNOSTIC, 26, -9.899322557470e-01, 1.227377538307e-04, 2.6003e-01, 1.8799e-03, - 2DIAGNOSTIC, 27, -9.924011042140e-01, 1.267356191372e-04, 2.6205e-01, 2.0180e-03, - 2DIAGNOSTIC, 28, -9.937546411734e-01, 1.705581922170e-04, 2.6408e-01, 2.0339e-03, - 2DIAGNOSTIC, 29, -9.939033614620e-01, 1.923608960954e-04, 2.6587e-01, 1.7862e-03, - 2DIAGNOSTIC, 30, -9.944525114578e-01, 2.004384693196e-04, 2.6743e-01, 1.5621e-03, - 2DIAGNOSTIC, 31, -9.976928326356e-01, 2.219892023335e-04, 2.6907e-01, 1.6410e-03, - 2DIAGNOSTIC, 32, -9.999035515025e-01, 2.436027723746e-04, 2.7083e-01, 1.7600e-03, - 2DIAGNOSTIC, 33, -1.001165726582e+00, 2.563950232143e-04, 2.7219e-01, 1.3599e-03, - 2DIAGNOSTIC, 34, -1.008069604751e+00, 3.110825392610e-04, 2.7476e-01, 2.5680e-03, - 2DIAGNOSTIC, 35, -1.009527037094e+00, 3.528428434286e-04, 2.7610e-01, 1.3371e-03, - 2DIAGNOSTIC, 36, -1.009407740981e+00, 3.622928257038e-04, 2.7740e-01, 1.2999e-03, - 2DIAGNOSTIC, 37, -1.010344768353e+00, 3.642974418958e-04, 2.7874e-01, 1.3449e-03, - 2DIAGNOSTIC, 38, -1.011915236381e+00, 3.541462941288e-04, 2.8042e-01, 1.6789e-03, - 2DIAGNOSTIC, 39, -1.018642560737e+00, 3.617393390400e-04, 2.8218e-01, 1.7540e-03, - 2DIAGNOSTIC, 40, -1.020738159446e+00, 3.520316853136e-04, 2.8424e-01, 2.0680e-03, - 2DIAGNOSTIC, 41, -1.021730841394e+00, 3.402569538621e-04, 2.8575e-01, 1.5061e-03, - 2DIAGNOSTIC, 42, -1.021906501470e+00, 3.143668288100e-04, 2.8774e-01, 1.9932e-03, - 2DIAGNOSTIC, 43, -1.021535951602e+00, 2.645297853720e-04, 2.8919e-01, 1.4458e-03, - 2DIAGNOSTIC, 44, -1.021297335988e+00, 2.351653305208e-04, 2.9093e-01, 1.7431e-03, - 2DIAGNOSTIC, 45, -1.021918363504e+00, 1.980837012472e-04, 2.9289e-01, 1.9538e-03, - 2DIAGNOSTIC, 46, -1.022384012913e+00, 1.463241712199e-04, 2.9469e-01, 1.8001e-03, - 2DIAGNOSTIC, 47, -1.022106501402e+00, 8.735641176807e-05, 2.9645e-01, 1.7641e-03, - 2DIAGNOSTIC, 48, -1.022745132277e+00, 3.527865659263e-05, 2.9844e-01, 1.9851e-03, - 2DIAGNOSTIC, 49, -1.022671973534e+00, 2.113599409661e-05, 3.0025e-01, 1.8110e-03, - 2DIAGNOSTIC, 50, -1.024102655691e+00, 2.582381692825e-05, 3.0229e-01, 2.0399e-03, - 2DIAGNOSTIC, 51, -1.024202247999e+00, 3.380015403747e-05, 3.0397e-01, 1.6789e-03, - 2DIAGNOSTIC, 52, -1.024328841082e+00, 4.013522708127e-05, 3.0571e-01, 1.7490e-03, - 2DIAGNOSTIC, 53, -1.026697792505e+00, 5.350511499697e-05, 3.0747e-01, 1.7519e-03, - 2DIAGNOSTIC, 54, -1.027168612326e+00, 6.205689746992e-05, 3.0906e-01, 1.5900e-03, - 2DIAGNOSTIC, 55, -1.027263375901e+00, 6.807148073619e-05, 3.1058e-01, 1.5271e-03, - 2DIAGNOSTIC, 56, -1.027296207374e+00, 7.020040124417e-05, 3.1203e-01, 1.4429e-03, - 2DIAGNOSTIC, 57, -1.027324306200e+00, 6.430989736255e-05, 3.1393e-01, 1.9040e-03, - 2DIAGNOSTIC, 58, -1.027334394410e+00, 5.562780181848e-05, 3.1536e-01, 1.4260e-03, - 2DIAGNOSTIC, 59, -1.027345495460e+00, 4.139349353696e-05, 3.1704e-01, 1.6820e-03, - 2DIAGNOSTIC, 60, -1.027375977480e+00, 3.088901289136e-05, 3.1883e-01, 1.7939e-03, - 2DIAGNOSTIC, 61, -1.026672903398e+00, 1.513010204571e-05, 3.2022e-01, 1.3850e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.782568823018e-01, 1.797693134862e+308, 5.4057e-01, 2.2036e-01, - 2DIAGNOSTIC, 2, -8.800483707193e-01, 1.797693134862e+308, 5.4271e-01, 2.1369e-03, - 2DIAGNOSTIC, 3, -8.827507851336e-01, 1.797693134862e+308, 5.4491e-01, 2.1989e-03, - 2DIAGNOSTIC, 4, -8.854670081552e-01, 1.797693134862e+308, 5.4736e-01, 2.4529e-03, - 2DIAGNOSTIC, 5, -8.886275540964e-01, 1.797693134862e+308, 5.5025e-01, 2.8849e-03, - 2DIAGNOSTIC, 6, -8.897000858379e-01, 1.797693134862e+308, 5.5341e-01, 3.1581e-03, - 2DIAGNOSTIC, 7, -8.906583993065e-01, 1.797693134862e+308, 5.5642e-01, 3.0172e-03, - 2DIAGNOSTIC, 8, -8.923026735511e-01, 1.797693134862e+308, 5.5928e-01, 2.8560e-03, - 2DIAGNOSTIC, 9, -8.923540580460e-01, 1.797693134862e+308, 5.6188e-01, 2.6031e-03, - 2DIAGNOSTIC, 10, -8.922613742790e-01, 1.094297682774e-03, 5.6432e-01, 2.4340e-03, - 2DIAGNOSTIC, 11, -8.921830672610e-01, 7.932112026771e-04, 5.6702e-01, 2.6999e-03, - 2DIAGNOSTIC, 12, -8.922375735917e-01, 5.204650920679e-04, 5.6945e-01, 2.4319e-03, - 2DIAGNOSTIC, 13, -8.922999881883e-01, 3.097400495888e-04, 5.7188e-01, 2.4340e-03, - 2DIAGNOSTIC, 14, -8.923821422955e-01, 1.636384842921e-04, 5.7442e-01, 2.5330e-03, - 2DIAGNOSTIC, 15, -8.926788266329e-01, 9.623660662512e-05, 5.7714e-01, 2.7289e-03, - 2DIAGNOSTIC, 16, -8.930392029762e-01, 5.705259775034e-05, 5.7994e-01, 2.8000e-03, - 2DIAGNOSTIC, 17, -8.934764791330e-01, 4.263995027694e-05, 5.8251e-01, 2.5680e-03, - 2DIAGNOSTIC, 18, -8.943189400901e-01, 7.004415309741e-05, 5.8548e-01, 2.9631e-03, - 2DIAGNOSTIC, 19, -8.947879263824e-01, 9.674835977104e-05, 5.8947e-01, 3.9971e-03, - 2DIAGNOSTIC, 20, -8.951263979165e-01, 1.158756466559e-04, 5.9231e-01, 2.8350e-03, - 2DIAGNOSTIC, 21, -8.955251950909e-01, 1.274178385327e-04, 5.9476e-01, 2.4478e-03, - 2DIAGNOSTIC, 22, -8.955379440650e-01, 1.270192470839e-04, 5.9783e-01, 3.0758e-03, - 2DIAGNOSTIC, 23, -8.959690617691e-01, 1.217444760602e-04, 6.0773e-01, 9.8989e-03, - 2DIAGNOSTIC, 24, -8.959690282979e-01, 1.065234741313e-04, 6.1072e-01, 2.9919e-03, - 2DIAGNOSTIC, 25, -8.959690955125e-01, 8.650075078546e-05, 6.1317e-01, 2.4481e-03, - 2DIAGNOSTIC, 26, -8.959692091459e-01, 6.448415711097e-05, 6.1567e-01, 2.4960e-03, - 2DIAGNOSTIC, 27, -8.959694012072e-01, 4.312068417743e-05, 6.1813e-01, 2.4600e-03, - 2DIAGNOSTIC, 28, -8.959697257199e-01, 2.881135051095e-05, 6.2061e-01, 2.4810e-03, - 2DIAGNOSTIC, 29, -8.959702737231e-01, 1.796984639343e-05, 6.2309e-01, 2.4822e-03, - 2DIAGNOSTIC, 30, -8.959711975786e-01, 9.818359976640e-06, 6.2555e-01, 2.4588e-03, - 2DIAGNOSTIC, 31, -8.959727592514e-01, 5.529739038189e-06, 6.2808e-01, 2.5270e-03, - 2DIAGNOSTIC, 32, -8.959753901250e-01, 1.113667067523e-06, 6.3051e-01, 2.4390e-03, - 2DIAGNOSTIC, 33, -8.959797900216e-01, 1.157645638440e-06, 6.3290e-01, 2.3851e-03, - 2DIAGNOSTIC, 34, -8.959870906514e-01, 1.248303071459e-06, 6.3534e-01, 2.4359e-03, - 2DIAGNOSTIC, 35, -8.959990280040e-01, 1.412382138931e-06, 6.3788e-01, 2.5451e-03, - 2DIAGNOSTIC, 36, -8.960182684334e-01, 1.688999636720e-06, 6.4071e-01, 2.8298e-03, - 2DIAGNOSTIC, 37, -8.960393371460e-01, 2.054232169386e-06, 6.4306e-01, 2.3499e-03, - 2DIAGNOSTIC, 38, -8.958919460606e-01, 1.052711638017e-06, 6.4541e-01, 2.3499e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.382514941566e-01, 1.797693134862e+308, 8.9511e-01, 2.4970e-01, - 2DIAGNOSTIC, 2, -7.395504163057e-01, 1.797693134862e+308, 9.0854e-01, 1.3430e-02, - 2DIAGNOSTIC, 3, -7.405153925588e-01, 1.797693134862e+308, 9.2176e-01, 1.3218e-02, - 2DIAGNOSTIC, 4, -7.414125775897e-01, 1.797693134862e+308, 9.3511e-01, 1.3349e-02, - 2DIAGNOSTIC, 5, -7.419437453849e-01, 1.797693134862e+308, 9.4835e-01, 1.3245e-02, - 2DIAGNOSTIC, 6, -7.426458587552e-01, 1.797693134862e+308, 9.6075e-01, 1.2398e-02, - 2DIAGNOSTIC, 7, -7.434465669819e-01, 1.797693134862e+308, 9.7822e-01, 1.7474e-02, - 2DIAGNOSTIC, 8, -7.441847914869e-01, 1.797693134862e+308, 9.9266e-01, 1.4441e-02, - 2DIAGNOSTIC, 9, -7.444443991250e-01, 1.797693134862e+308, 1.0058e+00, 1.3131e-02, - 2DIAGNOSTIC, 10, -7.471656555923e-01, 6.475692661813e-04, 1.0211e+00, 1.5300e-02, - 2DIAGNOSTIC, 11, -7.484292222365e-01, 6.287459838491e-04, 1.0370e+00, 1.5860e-02, - 2DIAGNOSTIC, 12, -7.492095854651e-01, 6.223564172349e-04, 1.0522e+00, 1.5246e-02, - 2DIAGNOSTIC, 13, -7.502901195745e-01, 6.214644579441e-04, 1.0658e+00, 1.3637e-02, - 2DIAGNOSTIC, 14, -7.508859743939e-01, 6.048654899375e-04, 1.0832e+00, 1.7380e-02, - 2DIAGNOSTIC, 15, -7.511438221418e-01, 5.545218549040e-04, 1.0988e+00, 1.5626e-02, - 2DIAGNOSTIC, 16, -7.514489525919e-01, 4.832451598848e-04, 1.1142e+00, 1.5381e-02, - 2DIAGNOSTIC, 17, -7.514798966663e-01, 3.949710869824e-04, 1.1283e+00, 1.4031e-02, - 2DIAGNOSTIC, 18, -7.515368929461e-01, 2.977352364290e-04, 1.1462e+00, 1.7978e-02, - 2DIAGNOSTIC, 19, -7.515002926272e-01, 1.866308355877e-04, 1.1618e+00, 1.5614e-02, - 2DIAGNOSTIC, 20, -7.514659213665e-01, 1.203957194047e-04, 1.1769e+00, 1.5010e-02, - 2DIAGNOSTIC, 21, -7.514411064958e-01, 7.181539765235e-05, 1.1920e+00, 1.5099e-02, - 2DIAGNOSTIC, 22, -7.514047563471e-01, 3.360710066097e-05, 1.2059e+00, 1.3965e-02, - 2DIAGNOSTIC, 23, -7.514483813636e-01, 1.416247005906e-05, 1.2215e+00, 1.5542e-02, - 2DIAGNOSTIC, 24, -7.514351575534e-01, 4.306528744440e-06, 1.2368e+00, 1.5379e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.242296120711e-01, 1.797693134862e+308, 1.7684e+00, 5.3153e-01, - 2DIAGNOSTIC, 2, -6.249848077183e-01, 1.797693134862e+308, 1.8743e+00, 1.0593e-01, - 2DIAGNOSTIC, 3, -6.257588422782e-01, 1.797693134862e+308, 1.9813e+00, 1.0695e-01, - 2DIAGNOSTIC, 4, -6.264018092153e-01, 1.797693134862e+308, 2.0873e+00, 1.0608e-01, - 2DIAGNOSTIC, 5, -6.267174455256e-01, 1.797693134862e+308, 2.1935e+00, 1.0622e-01, - 2DIAGNOSTIC, 6, -6.269296917998e-01, 1.797693134862e+308, 2.2987e+00, 1.0515e-01, - 2DIAGNOSTIC, 7, -6.272192197837e-01, 1.797693134862e+308, 2.4224e+00, 1.2371e-01, - 2DIAGNOSTIC, 8, -6.275222251774e-01, 1.797693134862e+308, 2.5900e+00, 1.6761e-01, - 2DIAGNOSTIC, 9, -6.275746851323e-01, 1.797693134862e+308, 2.6951e+00, 1.0506e-01, - 2DIAGNOSTIC, 10, -6.275955517104e-01, 3.335885504458e-04, 2.7989e+00, 1.0377e-01, - 2DIAGNOSTIC, 11, -6.276286348610e-01, 2.294926011874e-04, 2.9184e+00, 1.1956e-01, - 2DIAGNOSTIC, 12, -6.277104984048e-01, 1.534874065692e-04, 3.0703e+00, 1.5189e-01, - 2DIAGNOSTIC, 13, -6.277401524301e-01, 1.029401829216e-04, 3.1879e+00, 1.1763e-01, - 2DIAGNOSTIC, 14, -6.277463971592e-01, 7.141976775980e-05, 3.3068e+00, 1.1885e-01, - 2DIAGNOSTIC, 15, -6.277414526296e-01, 4.728248045245e-05, 3.4544e+00, 1.4758e-01, - 2DIAGNOSTIC, 16, -6.277407149332e-01, 2.790346850907e-05, 3.5693e+00, 1.1489e-01, - 2DIAGNOSTIC, 17, -6.277396880158e-01, 1.586702421131e-05, 3.6854e+00, 1.1615e-01, - 2DIAGNOSTIC, 18, -6.277366585502e-01, 1.139006858682e-05, 3.7852e+00, 9.9788e-02, - 2DIAGNOSTIC, 19, -6.277356876804e-01, 7.745465608396e-06, 3.9098e+00, 1.2456e-01, - 2DIAGNOSTIC, 20, -6.277347126843e-01, 4.365135136707e-06, 4.0300e+00, 1.2024e-01, - 2DIAGNOSTIC, 21, -6.277299754926e-01, 1.619730952557e-06, 4.1521e+00, 1.2207e-01, - Elapsed time (stage 1): 4.2954e+00 - - -Total elapsed time: 1.0826e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:57:00 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 09:57:01 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x56314d2424f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.051, 56.773, -120.373] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56314d247fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbb4fa01010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x56314d243850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.051, 56.773, -120.373] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56314d240f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbb4c342010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x56314d25ab80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.051, 56.773, -120.373] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56314d247550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbb48c83010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x56314d25fd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.051, 56.773, -120.373] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56314d25dc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbb455c4010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x56314d261f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.051, 56.773, -120.373] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56314d2603a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbb41f05010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x56314d262540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.051, 56.773, -120.373] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56314d2624d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbb3e846010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.232035166969e-01, 1.797693134862e+308, 2.2060e-01, 2.2060e-01, - 2DIAGNOSTIC, 2, -7.255976654799e-01, 1.797693134862e+308, 2.2307e-01, 2.4750e-03, - 2DIAGNOSTIC, 3, -7.281011504874e-01, 1.797693134862e+308, 2.2547e-01, 2.3990e-03, - 2DIAGNOSTIC, 4, -7.311375035549e-01, 1.797693134862e+308, 2.2786e-01, 2.3851e-03, - 2DIAGNOSTIC, 5, -7.346355041079e-01, 1.797693134862e+308, 2.3002e-01, 2.1639e-03, - 2DIAGNOSTIC, 6, -7.354069789810e-01, 1.797693134862e+308, 2.3217e-01, 2.1510e-03, - 2DIAGNOSTIC, 7, -7.357992071387e-01, 1.797693134862e+308, 2.3464e-01, 2.4710e-03, - 2DIAGNOSTIC, 8, -7.372345589222e-01, 1.797693134862e+308, 2.3821e-01, 3.5651e-03, - 2DIAGNOSTIC, 9, -7.377180350654e-01, 1.797693134862e+308, 2.4063e-01, 2.4168e-03, - 2DIAGNOSTIC, 10, -7.375899867943e-01, 1.310159305278e-03, 2.4318e-01, 2.5489e-03, - 2DIAGNOSTIC, 11, -7.374752944747e-01, 9.215784821778e-04, 2.4567e-01, 2.4910e-03, - 2DIAGNOSTIC, 12, -7.373328032477e-01, 5.890404685563e-04, 2.4793e-01, 2.2631e-03, - 2DIAGNOSTIC, 13, -7.371909518379e-01, 3.235978625736e-04, 2.5014e-01, 2.2159e-03, - 2DIAGNOSTIC, 14, -7.371957799258e-01, 1.485093299593e-04, 2.5246e-01, 2.3139e-03, - 2DIAGNOSTIC, 15, -7.374968117514e-01, 8.162345353967e-05, 2.5474e-01, 2.2769e-03, - 2DIAGNOSTIC, 16, -7.378039443133e-01, 4.207842060630e-05, 2.5696e-01, 2.2259e-03, - 2DIAGNOSTIC, 17, -7.381702827768e-01, 1.988826192695e-05, 2.5966e-01, 2.6999e-03, - 2DIAGNOSTIC, 18, -7.383339756225e-01, 3.252026917155e-05, 2.6226e-01, 2.6019e-03, - 2DIAGNOSTIC, 19, -7.386401762749e-01, 5.711888536904e-05, 2.6513e-01, 2.8648e-03, - 2DIAGNOSTIC, 20, -7.385152027214e-01, 6.905543098307e-05, 2.6721e-01, 2.0781e-03, - 2DIAGNOSTIC, 21, -7.385240393822e-01, 7.170562838855e-05, 2.6932e-01, 2.1110e-03, - 2DIAGNOSTIC, 22, -7.386886454177e-01, 6.802560764617e-05, 2.7136e-01, 2.0468e-03, - 2DIAGNOSTIC, 23, -7.390737199827e-01, 6.246535620238e-05, 2.7358e-01, 2.2130e-03, - 2DIAGNOSTIC, 24, -7.390871482847e-01, 5.172846872196e-05, 2.7590e-01, 2.3201e-03, - 2DIAGNOSTIC, 25, -7.392444319432e-01, 4.429650367421e-05, 2.7818e-01, 2.2838e-03, - 2DIAGNOSTIC, 26, -7.397196574815e-01, 4.498193106378e-05, 2.8032e-01, 2.1379e-03, - 2DIAGNOSTIC, 27, -7.408200979649e-01, 6.219425059009e-05, 2.8269e-01, 2.3689e-03, - 2DIAGNOSTIC, 28, -7.413859875404e-01, 8.191158561769e-05, 2.8499e-01, 2.3010e-03, - 2DIAGNOSTIC, 29, -7.416532916175e-01, 1.003814104823e-04, 2.8782e-01, 2.8331e-03, - 2DIAGNOSTIC, 30, -7.416667381791e-01, 1.070579191871e-04, 2.8991e-01, 2.0859e-03, - 2DIAGNOSTIC, 31, -7.416091532989e-01, 1.026569535373e-04, 2.9217e-01, 2.2621e-03, - 2DIAGNOSTIC, 32, -7.416978700931e-01, 9.166001559066e-05, 2.9444e-01, 2.2688e-03, - 2DIAGNOSTIC, 33, -7.416195690186e-01, 7.622137809256e-05, 2.9684e-01, 2.4030e-03, - 2DIAGNOSTIC, 34, -7.415403825546e-01, 5.397620393086e-05, 2.9905e-01, 2.2111e-03, - 2DIAGNOSTIC, 35, -7.415014501368e-01, 2.939066156822e-05, 3.0206e-01, 3.0041e-03, - 2DIAGNOSTIC, 36, -7.414012119163e-01, 7.260346301306e-06, 3.0424e-01, 2.1830e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.227087514041e-01, 1.797693134862e+308, 5.5521e-01, 2.5097e-01, - 2DIAGNOSTIC, 2, -6.238364617799e-01, 1.797693134862e+308, 5.6891e-01, 1.3697e-02, - 2DIAGNOSTIC, 3, -6.248472172447e-01, 1.797693134862e+308, 5.8231e-01, 1.3400e-02, - 2DIAGNOSTIC, 4, -6.255290949773e-01, 1.797693134862e+308, 5.9575e-01, 1.3439e-02, - 2DIAGNOSTIC, 5, -6.257425659008e-01, 1.797693134862e+308, 6.1288e-01, 1.7127e-02, - 2DIAGNOSTIC, 6, -6.257827655192e-01, 1.797693134862e+308, 6.3048e-01, 1.7606e-02, - 2DIAGNOSTIC, 7, -6.257703010654e-01, 1.797693134862e+308, 6.4576e-01, 1.5274e-02, - 2DIAGNOSTIC, 8, -6.257421351457e-01, 1.797693134862e+308, 6.6112e-01, 1.5364e-02, - 2DIAGNOSTIC, 9, -6.257743833089e-01, 1.797693134862e+308, 6.7829e-01, 1.7172e-02, - 2DIAGNOSTIC, 10, -6.257838584540e-01, 2.539379533595e-04, 6.9431e-01, 1.6020e-02, - 2DIAGNOSTIC, 11, -6.257846769584e-01, 1.242428919834e-04, 7.0916e-01, 1.4845e-02, - 2DIAGNOSTIC, 12, -6.257737468849e-01, 4.697979602866e-05, 7.2539e-01, 1.6235e-02, - 2DIAGNOSTIC, 13, -6.257272978954e-01, 1.078555130359e-05, 7.4266e-01, 1.7269e-02, - 2DIAGNOSTIC, 14, -6.257381176745e-01, 1.330337146097e-06, 7.6209e-01, 1.9425e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.247732385836e-01, 1.797693134862e+308, 1.1533e+00, 3.9120e-01, - 2DIAGNOSTIC, 2, -5.255844713827e-01, 1.797693134862e+308, 1.2466e+00, 9.3271e-02, - 2DIAGNOSTIC, 3, -5.265278335759e-01, 1.797693134862e+308, 1.3409e+00, 9.4375e-02, - 2DIAGNOSTIC, 4, -5.272726280144e-01, 1.797693134862e+308, 1.4380e+00, 9.7083e-02, - 2DIAGNOSTIC, 5, -5.278249557669e-01, 1.797693134862e+308, 1.5338e+00, 9.5746e-02, - 2DIAGNOSTIC, 6, -5.283208503523e-01, 1.797693134862e+308, 1.6244e+00, 9.0605e-02, - 2DIAGNOSTIC, 7, -5.288685036028e-01, 1.797693134862e+308, 1.7297e+00, 1.0534e-01, - 2DIAGNOSTIC, 8, -5.292516681001e-01, 1.797693134862e+308, 1.8885e+00, 1.5883e-01, - 2DIAGNOSTIC, 9, -5.292986747028e-01, 1.797693134862e+308, 2.0081e+00, 1.1952e-01, - 2DIAGNOSTIC, 10, -5.293040476068e-01, 5.694979183916e-04, 2.1094e+00, 1.0133e-01, - 2DIAGNOSTIC, 11, -5.293066707104e-01, 4.104655953268e-04, 2.2039e+00, 9.4533e-02, - 2DIAGNOSTIC, 12, -5.293072890095e-01, 2.769534813860e-04, 2.2870e+00, 8.3024e-02, - 2DIAGNOSTIC, 13, -5.293100527301e-01, 1.778081749992e-04, 2.3819e+00, 9.4927e-02, - 2DIAGNOSTIC, 14, -5.293238428670e-01, 1.059664621018e-04, 2.4881e+00, 1.0625e-01, - 2DIAGNOSTIC, 15, -5.293448174387e-01, 5.475033718651e-05, 2.5992e+00, 1.1111e-01, - 2DIAGNOSTIC, 16, -5.293331725863e-01, 2.104303628200e-05, 2.7579e+00, 1.5870e-01, - 2DIAGNOSTIC, 17, -5.293377765041e-01, 6.726606064274e-06, 2.8889e+00, 1.3092e-01, - 2DIAGNOSTIC, 18, -5.293349844214e-01, 4.883114806321e-06, 2.9952e+00, 1.0636e-01, - 2DIAGNOSTIC, 19, -5.293330901198e-01, 4.208634488793e-06, 3.1015e+00, 1.0625e-01, - 2DIAGNOSTIC, 20, -5.293330686755e-01, 3.502592676605e-06, 3.2097e+00, 1.0824e-01, - 2DIAGNOSTIC, 21, -5.293322106669e-01, 2.738195454002e-06, 3.3145e+00, 1.0483e-01, - 2DIAGNOSTIC, 22, -5.293317439179e-01, 1.942832826306e-06, 3.4182e+00, 1.0366e-01, - 2DIAGNOSTIC, 23, -5.293280959901e-01, 1.142911313194e-06, 3.5503e+00, 1.3206e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.605327037008e-01, 1.797693134862e+308, 4.7560e+00, 1.2058e+00, - 2DIAGNOSTIC, 2, -4.607731727051e-01, 1.797693134862e+308, 5.3617e+00, 6.0564e-01, - 2DIAGNOSTIC, 3, -4.607987574362e-01, 1.797693134862e+308, 5.9155e+00, 5.5380e-01, - 2DIAGNOSTIC, 4, -4.608001005905e-01, 1.797693134862e+308, 6.3856e+00, 4.7016e-01, - 2DIAGNOSTIC, 5, -4.608177946872e-01, 1.797693134862e+308, 6.9751e+00, 5.8949e-01, - 2DIAGNOSTIC, 6, -4.608348806456e-01, 1.797693134862e+308, 7.6683e+00, 6.9317e-01, - 2DIAGNOSTIC, 7, -4.608259146783e-01, 1.797693134862e+308, 8.2991e+00, 6.3081e-01, - 2DIAGNOSTIC, 8, -4.608284171692e-01, 1.797693134862e+308, 8.9600e+00, 6.6095e-01, - 2DIAGNOSTIC, 9, -4.608269907339e-01, 1.797693134862e+308, 9.5133e+00, 5.5324e-01, - 2DIAGNOSTIC, 10, -4.608268083520e-01, 2.642307986418e-05, 1.0139e+01, 6.2554e-01, - 2DIAGNOSTIC, 11, -4.608278141533e-01, 8.583555933028e-06, 1.0821e+01, 6.8217e-01, - 2DIAGNOSTIC, 12, -4.608274023071e-01, 5.524978110696e-06, 1.1596e+01, 7.7464e-01, - 2DIAGNOSTIC, 13, -4.608272737650e-01, 3.907617144513e-06, 1.2216e+01, 6.2051e-01, - 2DIAGNOSTIC, 14, -4.608271434909e-01, 2.423717105973e-06, 1.2892e+01, 6.7605e-01, - 2DIAGNOSTIC, 15, -4.608270563682e-01, 1.824915835072e-06, 1.3515e+01, 6.2245e-01, - 2DIAGNOSTIC, 16, -4.608266804768e-01, 1.981813310126e-06, 1.4084e+01, 5.6931e-01, - 2DIAGNOSTIC, 17, -4.608266525111e-01, 1.791607020005e-06, 1.4688e+01, 6.0406e-01, - 2DIAGNOSTIC, 18, -4.608265795359e-01, 1.714998775666e-06, 1.5295e+01, 6.0691e-01, - 2DIAGNOSTIC, 19, -4.608263515731e-01, 1.597898905727e-06, 1.5789e+01, 4.9376e-01, - 2DIAGNOSTIC, 20, -4.608263352914e-01, 1.492637507559e-06, 1.6350e+01, 5.6115e-01, - 2DIAGNOSTIC, 21, -4.608264575741e-01, 1.439991404527e-06, 1.6912e+01, 5.6184e-01, - 2DIAGNOSTIC, 22, -4.608263815377e-01, 1.385312920169e-06, 1.7454e+01, 5.4184e-01, - 2DIAGNOSTIC, 23, -4.608262050678e-01, 1.332941924240e-06, 1.8062e+01, 6.0843e-01, - 2DIAGNOSTIC, 24, -4.608260540892e-01, 1.282609521772e-06, 1.8600e+01, 5.3811e-01, - 2DIAGNOSTIC, 25, -4.608257027445e-01, 1.229779175771e-06, 1.9165e+01, 5.6449e-01, - 2DIAGNOSTIC, 26, -4.608254742009e-01, 1.170683494804e-06, 1.9852e+01, 6.8771e-01, - 2DIAGNOSTIC, 27, -4.608253987173e-01, 1.118586390306e-06, 2.0384e+01, 5.3135e-01, - 2DIAGNOSTIC, 28, -4.608251833731e-01, 1.069609808071e-06, 2.0919e+01, 5.3583e-01, - 2DIAGNOSTIC, 29, -4.608251409498e-01, 1.024683940178e-06, 2.1461e+01, 5.4144e-01, - Elapsed time (stage 0): 2.1827e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.207844111597e-01, 1.797693134862e+308, 1.8465e-01, 1.8464e-01, - 2DIAGNOSTIC, 2, -7.233643563457e-01, 1.797693134862e+308, 1.8667e-01, 2.0258e-03, - 2DIAGNOSTIC, 3, -7.267478013384e-01, 1.797693134862e+308, 1.8864e-01, 1.9710e-03, - 2DIAGNOSTIC, 4, -7.311486790783e-01, 1.797693134862e+308, 1.9057e-01, 1.9269e-03, - 2DIAGNOSTIC, 5, -7.358394779718e-01, 1.797693134862e+308, 1.9251e-01, 1.9388e-03, - 2DIAGNOSTIC, 6, -7.394608055808e-01, 1.797693134862e+308, 1.9457e-01, 2.0621e-03, - 2DIAGNOSTIC, 7, -7.399606467848e-01, 1.797693134862e+308, 1.9695e-01, 2.3811e-03, - 2DIAGNOSTIC, 8, -7.400577874049e-01, 1.797693134862e+308, 1.9899e-01, 2.0361e-03, - 2DIAGNOSTIC, 9, -7.401981114731e-01, 1.797693134862e+308, 2.0109e-01, 2.1009e-03, - 2DIAGNOSTIC, 10, -7.405850007029e-01, 1.884096048571e-03, 2.0339e-01, 2.3031e-03, - 2DIAGNOSTIC, 11, -7.408100398349e-01, 1.337579399812e-03, 2.0598e-01, 2.5861e-03, - 2DIAGNOSTIC, 12, -7.410584542154e-01, 8.547464961646e-04, 2.0886e-01, 2.8820e-03, - 2DIAGNOSTIC, 13, -7.412494729515e-01, 4.757401537858e-04, 2.1157e-01, 2.7092e-03, - 2DIAGNOSTIC, 14, -7.414489835657e-01, 2.328484598154e-04, 2.1463e-01, 3.0639e-03, - 2DIAGNOSTIC, 15, -7.418734786786e-01, 1.304994485285e-04, 2.1720e-01, 2.5651e-03, - 2DIAGNOSTIC, 16, -7.419633487265e-01, 1.181862256178e-04, 2.2002e-01, 2.8181e-03, - 2DIAGNOSTIC, 17, -7.420051072876e-01, 1.090449174450e-04, 2.2325e-01, 3.2370e-03, - 2DIAGNOSTIC, 18, -7.418696057759e-01, 9.034244041332e-05, 2.2577e-01, 2.5148e-03, - 2DIAGNOSTIC, 19, -7.420426746371e-01, 7.168697408858e-05, 2.2814e-01, 2.3699e-03, - 2DIAGNOSTIC, 20, -7.420578458623e-01, 5.587055167392e-05, 2.3561e-01, 7.4720e-03, - 2DIAGNOSTIC, 21, -7.420578457087e-01, 4.054288889480e-05, 2.4310e-01, 7.4892e-03, - 2DIAGNOSTIC, 22, -7.420578457087e-01, 2.743221834252e-05, 2.4574e-01, 2.6379e-03, - 2DIAGNOSTIC, 23, -7.420578457087e-01, 1.627777147883e-05, 2.4982e-01, 4.0848e-03, - 2DIAGNOSTIC, 24, -7.420578457087e-01, 7.655096296529e-06, 2.5236e-01, 2.5370e-03, - 2DIAGNOSTIC, 25, -7.420578457087e-01, 5.585755302837e-06, 2.5578e-01, 3.4230e-03, - 2DIAGNOSTIC, 26, -7.420578457087e-01, 4.600127000452e-06, 2.5938e-01, 3.6008e-03, - 2DIAGNOSTIC, 27, -7.420578457087e-01, 4.053896424633e-06, 2.6333e-01, 3.9480e-03, - 2DIAGNOSTIC, 28, -7.420578457087e-01, 1.349212609927e-06, 2.6676e-01, 3.4330e-03, - 2DIAGNOSTIC, 29, -7.420578457087e-01, 1.101325422338e-06, 2.7021e-01, 3.4490e-03, - 2DIAGNOSTIC, 30, -7.420578457087e-01, 1.064473126727e-06, 2.7351e-01, 3.2949e-03, - 2DIAGNOSTIC, 31, -7.420578457087e-01, 1.030005481059e-06, 2.7603e-01, 2.5229e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.266035234076e-01, 1.797693134862e+308, 4.8250e-01, 2.0647e-01, - 2DIAGNOSTIC, 2, -6.280245362000e-01, 1.797693134862e+308, 4.9748e-01, 1.4980e-02, - 2DIAGNOSTIC, 3, -6.296094116827e-01, 1.797693134862e+308, 5.1159e-01, 1.4114e-02, - 2DIAGNOSTIC, 4, -6.310144608476e-01, 1.797693134862e+308, 5.2572e-01, 1.4130e-02, - 2DIAGNOSTIC, 5, -6.327235652521e-01, 1.797693134862e+308, 5.3991e-01, 1.4188e-02, - 2DIAGNOSTIC, 6, -6.337276296184e-01, 1.797693134862e+308, 5.5658e-01, 1.6668e-02, - 2DIAGNOSTIC, 7, -6.342806177943e-01, 1.797693134862e+308, 5.7331e-01, 1.6730e-02, - 2DIAGNOSTIC, 8, -6.344976971648e-01, 1.797693134862e+308, 5.8918e-01, 1.5869e-02, - 2DIAGNOSTIC, 9, -6.346883587777e-01, 1.797693134862e+308, 6.0297e-01, 1.3796e-02, - 2DIAGNOSTIC, 10, -6.349131073586e-01, 8.690195855730e-04, 6.1915e-01, 1.6178e-02, - 2DIAGNOSTIC, 11, -6.349474442048e-01, 6.181196835159e-04, 6.3347e-01, 1.4321e-02, - 2DIAGNOSTIC, 12, -6.349530318615e-01, 4.071104469996e-04, 6.4971e-01, 1.6236e-02, - 2DIAGNOSTIC, 13, -6.349769037027e-01, 2.475599876681e-04, 6.6828e-01, 1.8571e-02, - 2DIAGNOSTIC, 14, -6.349931142072e-01, 1.331604241873e-04, 6.8840e-01, 2.0121e-02, - 2DIAGNOSTIC, 15, -6.349821313607e-01, 7.224823070877e-05, 7.0132e-01, 1.2921e-02, - 2DIAGNOSTIC, 16, -6.349893684454e-01, 4.061746611057e-05, 7.1356e-01, 1.2236e-02, - 2DIAGNOSTIC, 17, -6.349800925404e-01, 2.350092897943e-05, 7.2577e-01, 1.2209e-02, - 2DIAGNOSTIC, 18, -6.349870737572e-01, 1.181727738011e-05, 7.3942e-01, 1.3655e-02, - 2DIAGNOSTIC, 19, -6.349927224075e-01, 4.919295606781e-06, 7.5357e-01, 1.4146e-02, - 2DIAGNOSTIC, 20, -6.349838525204e-01, 3.239420080743e-06, 7.6551e-01, 1.1944e-02, - 2DIAGNOSTIC, 21, -6.349768884319e-01, 2.168074439257e-06, 7.7920e-01, 1.3692e-02, - 2DIAGNOSTIC, 22, -6.349830572304e-01, 1.365574856062e-06, 7.9472e-01, 1.5516e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.255036903441e-01, 1.797693134862e+308, 1.1714e+00, 3.7669e-01, - 2DIAGNOSTIC, 2, -5.266039414755e-01, 1.797693134862e+308, 1.2711e+00, 9.9647e-02, - 2DIAGNOSTIC, 3, -5.278161971012e-01, 1.797693134862e+308, 1.3707e+00, 9.9600e-02, - 2DIAGNOSTIC, 4, -5.287044959946e-01, 1.797693134862e+308, 1.4615e+00, 9.0826e-02, - 2DIAGNOSTIC, 5, -5.291843676031e-01, 1.797693134862e+308, 1.5476e+00, 8.6067e-02, - 2DIAGNOSTIC, 6, -5.294977485428e-01, 1.797693134862e+308, 1.6397e+00, 9.2156e-02, - 2DIAGNOSTIC, 7, -5.299587420620e-01, 1.797693134862e+308, 1.7543e+00, 1.1459e-01, - 2DIAGNOSTIC, 8, -5.302511917089e-01, 1.797693134862e+308, 1.9535e+00, 1.9921e-01, - 2DIAGNOSTIC, 9, -5.302543129051e-01, 1.797693134862e+308, 2.0558e+00, 1.0234e-01, - 2DIAGNOSTIC, 10, -5.302622043017e-01, 5.564675421834e-04, 2.1580e+00, 1.0211e-01, - 2DIAGNOSTIC, 11, -5.302880487339e-01, 3.684339883170e-04, 2.2618e+00, 1.0381e-01, - 2DIAGNOSTIC, 12, -5.303259027412e-01, 2.287895576675e-04, 2.3643e+00, 1.0256e-01, - 2DIAGNOSTIC, 13, -5.303880612480e-01, 1.420098885282e-04, 2.4668e+00, 1.0242e-01, - 2DIAGNOSTIC, 14, -5.304461450431e-01, 9.110648029814e-05, 2.5664e+00, 9.9647e-02, - 2DIAGNOSTIC, 15, -5.305066999417e-01, 5.826895946648e-05, 2.6687e+00, 1.0235e-01, - 2DIAGNOSTIC, 16, -5.305300241151e-01, 3.534957975525e-05, 2.8208e+00, 1.5202e-01, - 2DIAGNOSTIC, 17, -5.305262050773e-01, 2.623849847368e-05, 2.9170e+00, 9.6227e-02, - 2DIAGNOSTIC, 18, -5.305269661628e-01, 2.464583525724e-05, 3.0122e+00, 9.5244e-02, - 2DIAGNOSTIC, 19, -5.305268326035e-01, 2.117388717417e-05, 3.1132e+00, 1.0091e-01, - 2DIAGNOSTIC, 20, -5.305280323387e-01, 1.646470384772e-05, 3.2134e+00, 1.0022e-01, - 2DIAGNOSTIC, 21, -5.305288339099e-01, 1.149981052373e-05, 3.3144e+00, 1.0103e-01, - 2DIAGNOSTIC, 22, -5.305300457938e-01, 7.004499195558e-06, 3.6623e+00, 3.4791e-01, - 2DIAGNOSTIC, 23, -5.305300457497e-01, 3.817713106362e-06, 4.0089e+00, 3.4661e-01, - 2DIAGNOSTIC, 24, -5.305300457497e-01, 1.933761214448e-06, 4.1239e+00, 1.1501e-01, - 2DIAGNOSTIC, 25, -5.305300457497e-01, 1.428000064085e-06, 4.2451e+00, 1.2119e-01, - 2DIAGNOSTIC, 26, -5.305300457497e-01, 1.429864612192e-06, 4.3673e+00, 1.2215e-01, - 2DIAGNOSTIC, 27, -5.305300457497e-01, 1.335888275784e-06, 4.4888e+00, 1.2149e-01, - 2DIAGNOSTIC, 28, -5.305300457497e-01, 1.248987098738e-06, 4.6234e+00, 1.3468e-01, - 2DIAGNOSTIC, 29, -5.305300457497e-01, 1.154990114639e-06, 4.7333e+00, 1.0990e-01, - 2DIAGNOSTIC, 30, -5.305300457497e-01, 1.083193069490e-06, 4.8458e+00, 1.1250e-01, - 2DIAGNOSTIC, 31, -5.305300457497e-01, 1.027248340515e-06, 4.9730e+00, 1.2718e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.601502012796e-01, 1.797693134862e+308, 6.2247e+00, 1.2517e+00, - 2DIAGNOSTIC, 2, -4.605202649051e-01, 1.797693134862e+308, 6.7827e+00, 5.5798e-01, - 2DIAGNOSTIC, 3, -4.607618485980e-01, 1.797693134862e+308, 7.3805e+00, 5.9782e-01, - 2DIAGNOSTIC, 4, -4.609606622865e-01, 1.797693134862e+308, 7.9759e+00, 5.9532e-01, - 2DIAGNOSTIC, 5, -4.612068570450e-01, 1.797693134862e+308, 9.1173e+00, 1.1415e+00, - 2DIAGNOSTIC, 6, -4.612158345689e-01, 1.797693134862e+308, 9.7939e+00, 6.7663e-01, - 2DIAGNOSTIC, 7, -4.612140457200e-01, 1.797693134862e+308, 1.0469e+01, 6.7503e-01, - 2DIAGNOSTIC, 8, -4.612122787429e-01, 1.797693134862e+308, 1.1068e+01, 5.9949e-01, - 2DIAGNOSTIC, 9, -4.612125307407e-01, 1.797693134862e+308, 1.2054e+01, 9.8525e-01, - 2DIAGNOSTIC, 10, -4.612124077868e-01, 1.328421075369e-04, 1.2834e+01, 7.8003e-01, - 2DIAGNOSTIC, 11, -4.612124279323e-01, 7.378507309148e-05, 1.3598e+01, 7.6414e-01, - 2DIAGNOSTIC, 12, -4.612122315217e-01, 3.719471213581e-05, 1.4263e+01, 6.6475e-01, - 2DIAGNOSTIC, 13, -4.612119045217e-01, 1.443706530098e-05, 1.4924e+01, 6.6180e-01, - 2DIAGNOSTIC, 14, -4.612118271961e-01, 2.286758944162e-06, 1.5751e+01, 8.2666e-01, - 2DIAGNOSTIC, 15, -4.612117677722e-01, 1.858241841887e-06, 1.6444e+01, 6.9281e-01, - 2DIAGNOSTIC, 16, -4.612115718054e-01, 1.846937995889e-06, 1.7040e+01, 5.9645e-01, - 2DIAGNOSTIC, 17, -4.612115524710e-01, 1.786626483584e-06, 1.7783e+01, 7.4270e-01, - 2DIAGNOSTIC, 18, -4.612114518819e-01, 1.676770115644e-06, 1.8474e+01, 6.9138e-01, - 2DIAGNOSTIC, 19, -4.612113617639e-01, 1.592252282599e-06, 1.9063e+01, 5.8889e-01, - 2DIAGNOSTIC, 20, -4.612111614744e-01, 1.513725236650e-06, 1.9774e+01, 7.1056e-01, - 2DIAGNOSTIC, 21, -4.612111623229e-01, 1.450692389604e-06, 2.0373e+01, 5.9932e-01, - 2DIAGNOSTIC, 22, -4.612112702740e-01, 1.397070480802e-06, 2.1059e+01, 6.8549e-01, - 2DIAGNOSTIC, 23, -4.612114279555e-01, 1.348017488280e-06, 2.1717e+01, 6.5846e-01, - 2DIAGNOSTIC, 24, -4.612114317013e-01, 1.304437367032e-06, 2.2508e+01, 7.9043e-01, - 2DIAGNOSTIC, 25, -4.612111380951e-01, 1.257909683007e-06, 2.3111e+01, 6.0310e-01, - 2DIAGNOSTIC, 26, -4.612112711649e-01, 1.215076959861e-06, 2.3790e+01, 6.7888e-01, - 2DIAGNOSTIC, 27, -4.612112161647e-01, 1.174278860150e-06, 2.4450e+01, 6.5997e-01, - 2DIAGNOSTIC, 28, -4.612111127381e-01, 1.132192011560e-06, 2.5099e+01, 6.4950e-01, - 2DIAGNOSTIC, 29, -4.612110777588e-01, 1.091000122883e-06, 2.5765e+01, 6.6623e-01, - 2DIAGNOSTIC, 30, -4.612105274183e-01, 1.037856993111e-06, 2.6402e+01, 6.3629e-01, - Elapsed time (stage 1): 2.6769e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.114561617577e-01, 1.797693134862e+308, 2.4397e-01, 2.4397e-01, - 1DIAGNOSTIC, 2, -9.203731614457e-01, 1.797693134862e+308, 3.3661e-01, 9.2645e-02, - 1DIAGNOSTIC, 3, -9.293590723344e-01, 1.797693134862e+308, 4.3976e-01, 1.0315e-01, - 1DIAGNOSTIC, 4, -9.361572877594e-01, 1.797693134862e+308, 5.3399e-01, 9.4227e-02, - 1DIAGNOSTIC, 5, -9.408811577569e-01, 1.797693134862e+308, 6.2975e-01, 9.5763e-02, - 1DIAGNOSTIC, 6, -9.445822816609e-01, 1.797693134862e+308, 7.2383e-01, 9.4084e-02, - 1DIAGNOSTIC, 7, -9.472826708797e-01, 1.797693134862e+308, 8.1845e-01, 9.4621e-02, - 1DIAGNOSTIC, 8, -9.496055088005e-01, 1.797693134862e+308, 9.1028e-01, 9.1831e-02, - 1DIAGNOSTIC, 9, -9.516963974599e-01, 1.797693134862e+308, 1.0109e+00, 1.0057e-01, - 1DIAGNOSTIC, 10, -9.534108811481e-01, 2.708747123315e-03, 1.1047e+00, 9.3851e-02, - 1DIAGNOSTIC, 11, -9.546462779729e-01, 1.946688650166e-03, 1.2018e+00, 9.7117e-02, - 1DIAGNOSTIC, 12, -9.555674505850e-01, 1.383146852713e-03, 1.2983e+00, 9.6518e-02, - 1DIAGNOSTIC, 13, -9.562780363699e-01, 1.005173286926e-03, 1.3969e+00, 9.8520e-02, - 1DIAGNOSTIC, 14, -9.566864331024e-01, 7.441514210650e-04, 1.4895e+00, 9.2619e-02, - 1DIAGNOSTIC, 15, -9.573520802629e-01, 5.575289757077e-04, 1.5847e+00, 9.5261e-02, - 1DIAGNOSTIC, 16, -9.570091912779e-01, 4.058586249275e-04, 1.6855e+00, 1.0075e-01, - 1DIAGNOSTIC, 17, -9.575916290597e-01, 2.928968642576e-04, 1.7864e+00, 1.0086e-01, - 1DIAGNOSTIC, 18, -9.571153678485e-01, 1.958093324198e-04, 1.8816e+00, 9.5207e-02, - 1DIAGNOSTIC, 19, -9.578042063936e-01, 1.347231867801e-04, 1.9772e+00, 9.5596e-02, - 1DIAGNOSTIC, 20, -9.572607214755e-01, 8.441726461513e-05, 2.0707e+00, 9.3530e-02, - 1DIAGNOSTIC, 21, -9.579094230840e-01, 5.821701845509e-05, 2.1631e+00, 9.2433e-02, - 1DIAGNOSTIC, 22, -9.573576178552e-01, 3.382034393744e-05, 2.2648e+00, 1.0163e-01, - 1DIAGNOSTIC, 23, -9.579663928002e-01, 2.583098276060e-05, 2.3579e+00, 9.3133e-02, - 1DIAGNOSTIC, 24, -9.573918091323e-01, 1.371499024718e-05, 2.4561e+00, 9.8244e-02, - 1DIAGNOSTIC, 25, -9.579753993611e-01, 1.670418908728e-05, 2.5533e+00, 9.7138e-02, - 1DIAGNOSTIC, 26, -9.574229587368e-01, 7.344455919052e-06, 2.6481e+00, 9.4869e-02, - 1DIAGNOSTIC, 27, -9.579787606202e-01, 1.106158461882e-05, 2.7412e+00, 9.3069e-02, - 1DIAGNOSTIC, 28, -9.574267168143e-01, 2.227610887980e-06, 2.8342e+00, 9.3035e-02, - 1DIAGNOSTIC, 29, -9.579693132209e-01, 6.939634561685e-06, 2.9298e+00, 9.5605e-02, - 1DIAGNOSTIC, 30, -9.574441076725e-01, -2.014483414456e-07, 3.0240e+00, 9.4134e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.050819331402e-01, 1.797693134862e+308, 3.8578e+00, 8.3382e-01, - 1DIAGNOSTIC, 2, -9.100823189445e-01, 1.797693134862e+308, 4.5147e+00, 6.5685e-01, - 1DIAGNOSTIC, 3, -9.142170262135e-01, 1.797693134862e+308, 5.1770e+00, 6.6235e-01, - 1DIAGNOSTIC, 4, -9.174850544199e-01, 1.797693134862e+308, 5.8454e+00, 6.6844e-01, - 1DIAGNOSTIC, 5, -9.200687038969e-01, 1.797693134862e+308, 6.5091e+00, 6.6364e-01, - 1DIAGNOSTIC, 6, -9.221967632762e-01, 1.797693134862e+308, 7.1860e+00, 6.7692e-01, - 1DIAGNOSTIC, 7, -9.240611836770e-01, 1.797693134862e+308, 7.8319e+00, 6.4591e-01, - 1DIAGNOSTIC, 8, -9.255446153456e-01, 1.797693134862e+308, 8.4835e+00, 6.5160e-01, - 1DIAGNOSTIC, 9, -9.269162892500e-01, 1.797693134862e+308, 9.1353e+00, 6.5179e-01, - 1DIAGNOSTIC, 10, -9.280129900280e-01, 1.518328942394e-03, 9.7855e+00, 6.5020e-01, - 1DIAGNOSTIC, 11, -9.289849132712e-01, 1.138347036698e-03, 1.0454e+01, 6.6841e-01, - 1DIAGNOSTIC, 12, -9.298569141228e-01, 8.695573720868e-04, 1.1127e+01, 6.7275e-01, - 1DIAGNOSTIC, 13, -9.306289196050e-01, 6.791758321585e-04, 1.1772e+01, 6.4576e-01, - 1DIAGNOSTIC, 14, -9.313630016081e-01, 5.418343155802e-04, 1.2423e+01, 6.5095e-01, - 1DIAGNOSTIC, 15, -9.319391004290e-01, 4.377812639691e-04, 1.3080e+01, 6.5638e-01, - 1DIAGNOSTIC, 16, -9.325856933831e-01, 3.596542099604e-04, 1.3724e+01, 6.4409e-01, - 1DIAGNOSTIC, 17, -9.331074416195e-01, 3.005242576856e-04, 1.4396e+01, 6.7254e-01, - 1DIAGNOSTIC, 18, -9.336010276319e-01, 2.537367678538e-04, 1.5076e+01, 6.8006e-01, - 1DIAGNOSTIC, 19, -9.340798883443e-01, 2.181671528720e-04, 1.5748e+01, 6.7197e-01, - 1DIAGNOSTIC, 20, -9.345475222690e-01, 1.897989867397e-04, 1.6401e+01, 6.5307e-01, - 1DIAGNOSTIC, 21, -9.350050829297e-01, 1.672506811051e-04, 1.7059e+01, 6.5732e-01, - 1DIAGNOSTIC, 22, -9.354665742449e-01, 1.496610361851e-04, 1.7738e+01, 6.7949e-01, - 1DIAGNOSTIC, 23, -9.359183639428e-01, 1.358557679141e-04, 1.8416e+01, 6.7745e-01, - 1DIAGNOSTIC, 24, -9.363715558593e-01, 1.256198146489e-04, 1.9087e+01, 6.7144e-01, - 1DIAGNOSTIC, 25, -9.368334877337e-01, 1.170705012379e-04, 1.9764e+01, 6.7663e-01, - 1DIAGNOSTIC, 26, -9.373056067448e-01, 1.113219261962e-04, 2.0429e+01, 6.6544e-01, - 1DIAGNOSTIC, 27, -9.377894287382e-01, 1.068939880123e-04, 2.1073e+01, 6.4389e-01, - 1DIAGNOSTIC, 28, -9.382949548153e-01, 1.036004583519e-04, 2.1722e+01, 6.4845e-01, - 1DIAGNOSTIC, 29, -9.388270658139e-01, 1.013941697315e-04, 2.2379e+01, 6.5707e-01, - 1DIAGNOSTIC, 30, -9.393808685289e-01, 1.001361568656e-04, 2.3054e+01, 6.7505e-01, - 1DIAGNOSTIC, 31, -9.399037670501e-01, 9.912180182737e-05, 2.3730e+01, 6.7610e-01, - 1DIAGNOSTIC, 32, -9.403637431764e-01, 9.756811468166e-05, 2.4407e+01, 6.7725e-01, - 1DIAGNOSTIC, 33, -9.407694282564e-01, 9.479695885950e-05, 2.5073e+01, 6.6560e-01, - 1DIAGNOSTIC, 34, -9.411329709620e-01, 9.052832126265e-05, 2.5753e+01, 6.8007e-01, - 1DIAGNOSTIC, 35, -9.414606042814e-01, 8.478756522893e-05, 2.6416e+01, 6.6360e-01, - 1DIAGNOSTIC, 36, -9.417551419207e-01, 7.780762925980e-05, 2.7096e+01, 6.7960e-01, - 1DIAGNOSTIC, 37, -9.420202003528e-01, 6.999171011713e-05, 2.7757e+01, 6.6106e-01, - 1DIAGNOSTIC, 38, -9.422550166291e-01, 6.188132264909e-05, 2.8433e+01, 6.7627e-01, - 1DIAGNOSTIC, 39, -9.424750690420e-01, 5.417947816897e-05, 2.9075e+01, 6.4138e-01, - 1DIAGNOSTIC, 40, -9.426767535269e-01, 4.745987542393e-05, 2.9744e+01, 6.6965e-01, - 1DIAGNOSTIC, 41, -9.428619981921e-01, 4.181695886795e-05, 3.0413e+01, 6.6888e-01, - 1DIAGNOSTIC, 42, -9.430315495029e-01, 3.703867683170e-05, 3.1093e+01, 6.7975e-01, - 1DIAGNOSTIC, 43, -9.431900244370e-01, 3.296760527044e-05, 3.1767e+01, 6.7444e-01, - 1DIAGNOSTIC, 44, -9.433356823095e-01, 2.948372142192e-05, 3.2438e+01, 6.7076e-01, - 1DIAGNOSTIC, 45, -9.434810813846e-01, 2.656701133251e-05, 3.3106e+01, 6.6746e-01, - 1DIAGNOSTIC, 46, -9.436077932806e-01, 2.405538033773e-05, 3.3782e+01, 6.7662e-01, - 1DIAGNOSTIC, 47, -9.437261431863e-01, 2.186931846481e-05, 3.4460e+01, 6.7798e-01, - 1DIAGNOSTIC, 48, -9.438371314534e-01, 1.991132167532e-05, 3.5122e+01, 6.6217e-01, - 1DIAGNOSTIC, 49, -9.439480855124e-01, 1.821979391619e-05, 3.5781e+01, 6.5852e-01, - 1DIAGNOSTIC, 50, -9.440458923939e-01, 1.670974629215e-05, 3.6456e+01, 6.7479e-01, - 1DIAGNOSTIC, 51, -9.441284833519e-01, 1.529545935696e-05, 3.7133e+01, 6.7754e-01, - 1DIAGNOSTIC, 52, -9.442164101514e-01, 1.401868127826e-05, 3.7799e+01, 6.6579e-01, - 1DIAGNOSTIC, 53, -9.442958339584e-01, 1.285139804427e-05, 3.8440e+01, 6.4099e-01, - 1DIAGNOSTIC, 54, -9.443723208212e-01, 1.178402799309e-05, 3.9098e+01, 6.5778e-01, - 1DIAGNOSTIC, 55, -9.444448240053e-01, 1.087072818592e-05, 3.9741e+01, 6.4304e-01, - 1DIAGNOSTIC, 56, -9.445136583105e-01, 1.005091619556e-05, 4.0384e+01, 6.4277e-01, - 1DIAGNOSTIC, 57, -9.445786673060e-01, 9.314673501817e-06, 4.1055e+01, 6.7095e-01, - 1DIAGNOSTIC, 58, -9.446319256260e-01, 8.609835178093e-06, 4.1741e+01, 6.8618e-01, - 1DIAGNOSTIC, 59, -9.446828888941e-01, 7.978118999406e-06, 4.2410e+01, 6.6948e-01, - 1DIAGNOSTIC, 60, -9.447369381470e-01, 7.413130155797e-06, 4.3070e+01, 6.5937e-01, - 1DIAGNOSTIC, 61, -9.447911620991e-01, 6.875587875189e-06, 4.3716e+01, 6.4660e-01, - 1DIAGNOSTIC, 62, -9.448431723401e-01, 6.420641509797e-06, 4.4360e+01, 6.4389e-01, - 1DIAGNOSTIC, 63, -9.448934131456e-01, 6.029386287333e-06, 4.5004e+01, 6.4390e-01, - 1DIAGNOSTIC, 64, -9.449419811103e-01, 5.705236043853e-06, 4.5669e+01, 6.6545e-01, - 1DIAGNOSTIC, 65, -9.449885034290e-01, 5.438131205269e-06, 4.6349e+01, 6.7976e-01, - 1DIAGNOSTIC, 66, -9.450229378107e-01, 5.169955272510e-06, 4.7028e+01, 6.7873e-01, - 1DIAGNOSTIC, 67, -9.450655020379e-01, 4.941224722298e-06, 4.7701e+01, 6.7287e-01, - 1DIAGNOSTIC, 68, -9.451056702282e-01, 4.700488576672e-06, 4.8366e+01, 6.6505e-01, - 1DIAGNOSTIC, 69, -9.451447304835e-01, 4.448979930774e-06, 4.9034e+01, 6.6820e-01, - 1DIAGNOSTIC, 70, -9.451811268815e-01, 4.207318637194e-06, 4.9705e+01, 6.7107e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.847977577031e-01, 1.797693134862e+308, 5.5340e+01, 5.6345e+00, - 1DIAGNOSTIC, 2, -8.883226189982e-01, 1.797693134862e+308, 6.0662e+01, 5.3220e+00, - 1DIAGNOSTIC, 3, -8.913264177432e-01, 1.797693134862e+308, 6.6033e+01, 5.3717e+00, - 1DIAGNOSTIC, 4, -8.939431317266e-01, 1.797693134862e+308, 7.1398e+01, 5.3649e+00, - 1DIAGNOSTIC, 5, -8.961896165156e-01, 1.797693134862e+308, 7.6778e+01, 5.3800e+00, - 1DIAGNOSTIC, 6, -8.981469316190e-01, 1.797693134862e+308, 8.2135e+01, 5.3568e+00, - 1DIAGNOSTIC, 7, -8.999000377964e-01, 1.797693134862e+308, 8.7514e+01, 5.3792e+00, - 1DIAGNOSTIC, 8, -9.014999882966e-01, 1.797693134862e+308, 9.2890e+01, 5.3763e+00, - 1DIAGNOSTIC, 9, -9.029933506386e-01, 1.797693134862e+308, 9.8270e+01, 5.3793e+00, - 1DIAGNOSTIC, 10, -9.042733471057e-01, 1.352314725960e-03, 1.0361e+02, 5.3379e+00, - 1DIAGNOSTIC, 11, -9.054853507748e-01, 1.085836736197e-03, 1.0899e+02, 5.3781e+00, - 1DIAGNOSTIC, 12, -9.066411910348e-01, 8.890577024395e-04, 1.1436e+02, 5.3746e+00, - 1DIAGNOSTIC, 13, -9.077522647235e-01, 7.416246329930e-04, 1.1971e+02, 5.3456e+00, - 1DIAGNOSTIC, 14, -9.088382197852e-01, 6.308556627248e-04, 1.2507e+02, 5.3591e+00, - 1DIAGNOSTIC, 15, -9.098981082139e-01, 5.463962311310e-04, 1.3046e+02, 5.3970e+00, - 1DIAGNOSTIC, 16, -9.109293582382e-01, 4.809397300033e-04, 1.3585e+02, 5.3879e+00, - 1DIAGNOSTIC, 17, -9.119349653486e-01, 4.297124881465e-04, 1.4128e+02, 5.4340e+00, - 1DIAGNOSTIC, 18, -9.129156910750e-01, 3.893042891266e-04, 1.4664e+02, 5.3602e+00, - 1DIAGNOSTIC, 19, -9.138650685117e-01, 3.572966790037e-04, 1.5205e+02, 5.4084e+00, - 1DIAGNOSTIC, 20, -9.147964864456e-01, 3.298481133069e-04, 1.5743e+02, 5.3798e+00, - 1DIAGNOSTIC, 21, -9.156957105790e-01, 3.056908331120e-04, 1.6282e+02, 5.3912e+00, - 1DIAGNOSTIC, 22, -9.165613202747e-01, 2.838809068884e-04, 1.6829e+02, 5.4667e+00, - 1DIAGNOSTIC, 23, -9.173767056057e-01, 2.635489389278e-04, 1.7367e+02, 5.3760e+00, - 1DIAGNOSTIC, 24, -9.181283500148e-01, 2.440968735484e-04, 1.7903e+02, 5.3589e+00, - 1DIAGNOSTIC, 25, -9.188193576010e-01, 2.251296479504e-04, 1.8440e+02, 5.3762e+00, - 1DIAGNOSTIC, 26, -9.194368353916e-01, 2.062230006315e-04, 1.8981e+02, 5.4107e+00, - 1DIAGNOSTIC, 27, -9.199862008299e-01, 1.872518577394e-04, 1.9523e+02, 5.4177e+00, - 1DIAGNOSTIC, 28, -9.204754327631e-01, 1.683484059081e-04, 2.0058e+02, 5.3543e+00, - 1DIAGNOSTIC, 29, -9.209224616199e-01, 1.498654920416e-04, 2.0595e+02, 5.3641e+00, - 1DIAGNOSTIC, 30, -9.213340543313e-01, 1.324015168386e-04, 2.1132e+02, 5.3711e+00, - 1DIAGNOSTIC, 31, -9.217082672625e-01, 1.163344250249e-04, 2.1671e+02, 5.3877e+00, - 1DIAGNOSTIC, 32, -9.220558701561e-01, 1.020681280002e-04, 2.2207e+02, 5.3644e+00, - 1DIAGNOSTIC, 33, -9.223797292770e-01, 8.975010668940e-05, 2.2747e+02, 5.3980e+00, - 1DIAGNOSTIC, 34, -9.226839727002e-01, 7.931746185216e-05, 2.3283e+02, 5.3625e+00, - 1DIAGNOSTIC, 35, -9.229713260276e-01, 7.066134281629e-05, 2.3822e+02, 5.3880e+00, - 1DIAGNOSTIC, 36, -9.232470715529e-01, 6.350944663710e-05, 2.4357e+02, 5.3480e+00, - 1DIAGNOSTIC, 37, -9.235069934703e-01, 5.753139012786e-05, 2.4893e+02, 5.3614e+00, - 1DIAGNOSTIC, 38, -9.237593504832e-01, 5.248788702798e-05, 2.5432e+02, 5.3951e+00, - 1DIAGNOSTIC, 39, -9.240024930437e-01, 4.823322904505e-05, 2.5971e+02, 5.3905e+00, - 1DIAGNOSTIC, 40, -9.242367398249e-01, 4.464315443172e-05, 2.6509e+02, 5.3715e+00, - 1DIAGNOSTIC, 41, -9.244648284146e-01, 4.156740731188e-05, 2.7047e+02, 5.3860e+00, - 1DIAGNOSTIC, 42, -9.246839756150e-01, 3.889672297163e-05, 2.7583e+02, 5.3572e+00, - 1DIAGNOSTIC, 43, -9.248982888721e-01, 3.655806399193e-05, 2.8123e+02, 5.3988e+00, - 1DIAGNOSTIC, 44, -9.251094650741e-01, 3.450520400674e-05, 2.8661e+02, 5.3849e+00, - 1DIAGNOSTIC, 45, -9.253195520109e-01, 3.271117704908e-05, 2.9205e+02, 5.4364e+00, - 1DIAGNOSTIC, 46, -9.255256881445e-01, 3.115307107877e-05, 2.9746e+02, 5.4122e+00, - 1DIAGNOSTIC, 47, -9.257285921841e-01, 2.977113286743e-05, 3.0283e+02, 5.3683e+00, - 1DIAGNOSTIC, 48, -9.259293571333e-01, 2.856081216030e-05, 3.0820e+02, 5.3661e+00, - 1DIAGNOSTIC, 49, -9.261194363284e-01, 2.744149785805e-05, 3.1361e+02, 5.4180e+00, - 1DIAGNOSTIC, 50, -9.263015060399e-01, 2.635497805637e-05, 3.1903e+02, 5.4135e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.826858891250e-01, 1.797693134862e+308, 3.6318e+02, 4.4149e+01, - 1DIAGNOSTIC, 2, -8.843669163234e-01, 1.797693134862e+308, 4.0736e+02, 4.4181e+01, - 1DIAGNOSTIC, 3, -8.865240032517e-01, 1.797693134862e+308, 4.5272e+02, 4.5362e+01, - 1DIAGNOSTIC, 4, -8.887299380556e-01, 1.797693134862e+308, 4.9756e+02, 4.4841e+01, - 1DIAGNOSTIC, 5, -8.908089183127e-01, 1.797693134862e+308, 5.4294e+02, 4.5375e+01, - 1DIAGNOSTIC, 6, -8.924068017112e-01, 1.797693134862e+308, 5.8781e+02, 4.4870e+01, - 1DIAGNOSTIC, 7, -8.938031635025e-01, 1.797693134862e+308, 6.3294e+02, 4.5132e+01, - 1DIAGNOSTIC, 8, -8.950192542217e-01, 1.797693134862e+308, 6.7808e+02, 4.5140e+01, - 1DIAGNOSTIC, 9, -8.961072350884e-01, 1.797693134862e+308, 7.2199e+02, 4.3913e+01, - 1DIAGNOSTIC, 10, -8.970664289674e-01, 1.063570771776e-03, 7.6570e+02, 4.3710e+01, - 1DIAGNOSTIC, 11, -8.979454379404e-01, 8.772074624803e-04, 8.0943e+02, 4.3729e+01, - 1DIAGNOSTIC, 12, -8.987588918626e-01, 7.091177676746e-04, 8.5307e+02, 4.3636e+01, - 1DIAGNOSTIC, 13, -8.995042749694e-01, 5.734203780537e-04, 8.9712e+02, 4.4055e+01, - 1DIAGNOSTIC, 14, -9.002053750422e-01, 4.705307746494e-04, 9.4069e+02, 4.3568e+01, - 1DIAGNOSTIC, 15, -9.008490535580e-01, 3.957974851976e-04, 9.8466e+02, 4.3971e+01, - 1DIAGNOSTIC, 16, -9.013985702410e-01, 3.365087427030e-04, 1.0284e+03, 4.3755e+01, - 1DIAGNOSTIC, 17, -9.018706639538e-01, 2.879576858632e-04, 1.0726e+03, 4.4156e+01, - 1DIAGNOSTIC, 18, -9.022839411179e-01, 2.468133117422e-04, 1.1162e+03, 4.3587e+01, - 1DIAGNOSTIC, 19, -9.026289748009e-01, 2.109731251269e-04, 1.1598e+03, 4.3673e+01, - 1DIAGNOSTIC, 20, -9.029325908484e-01, 1.790803429295e-04, 1.2036e+03, 4.3759e+01, - Elapsed time (stage 2): 1204 - - -Total elapsed time: 1253 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:28 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:28 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:31 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:36 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:39 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:39 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18625 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:40 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:44 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18698 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:44 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/anat/sub-PNC003_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:47 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:47 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18753 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:47 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18758 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:18:47 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:00 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:03 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:03 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:04 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:05 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:08 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:08 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:09 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:10 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:12 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:13 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:13 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/surf/sub-PNC003_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC003_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC003 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:13 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:22 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:33 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03/sub-PNC003_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC003 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:34 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC003 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:34 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC003_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC003 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:35 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19403 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:36 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:37 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc/sub-PNC003_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/xfm/sub-PNC003_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19451 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:38 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:38 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC003_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC003_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 70.667 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/logs/proc_func_18-03-2024-29731.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:45 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC003 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC003/ses-03/QC/sub-PNC003_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/15820_micapipe_proc-func_sub-PNC003_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC003* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 70.717 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC003_ses-03 -========================reprocessing without filter=================== -sub-PNC004_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC004 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC004 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC004 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC004 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:51 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:19:51 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-1_bold.nii.gz is 37.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:21:57 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:24:02 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:24:16 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.43 (mm) at sub-brick 0 -++ Max delta displ in automask = 0.36 (mm) at sub-brick 85 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:36:42 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:37:00 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-2_bold.nii.gz is 37.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:39:10 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:41:21 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-01/func/sub-PNC004_ses-01_task-rest_echo-3_bold.nii.gz is 37.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:43:34 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.033 -1.695 2.905 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 76.5 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = 0.400 -2.540 4.722 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 78.5 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:48:34 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:49:04 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55fbc177da50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 60.6235, -116.886] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fbc15f4730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55fbc1794350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55fbc1784600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [77.8093, 122.5, -131.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fbc1786e40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55fbc1f90f50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55fbc1f8f270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 60.6235, -116.886] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fbc1783640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55fbc2abb1c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55fbc1f8ea00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [77.8093, 122.5, -131.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fbc178a450) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55fbc32b5300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.631761559523e-01, 1.797693134862e+308, 4.1920e-02, 4.1920e-02, - 2DIAGNOSTIC, 2, -7.666532897479e-01, 1.797693134862e+308, 4.3179e-02, 1.2589e-03, - 2DIAGNOSTIC, 3, -7.739099978454e-01, 1.797693134862e+308, 4.4490e-02, 1.3108e-03, - 2DIAGNOSTIC, 4, -7.812761127030e-01, 1.797693134862e+308, 4.5694e-02, 1.2040e-03, - 2DIAGNOSTIC, 5, -7.856671015546e-01, 1.797693134862e+308, 4.6945e-02, 1.2510e-03, - 2DIAGNOSTIC, 6, -7.890342187581e-01, 1.797693134862e+308, 4.8143e-02, 1.1981e-03, - 2DIAGNOSTIC, 7, -7.997833974256e-01, 1.797693134862e+308, 4.9410e-02, 1.2670e-03, - 2DIAGNOSTIC, 8, -8.495978889559e-01, 1.797693134862e+308, 5.0744e-02, 1.3340e-03, - 2DIAGNOSTIC, 9, -9.009662694862e-01, 1.797693134862e+308, 5.2998e-02, 2.2540e-03, - 2DIAGNOSTIC, 10, -9.125549592177e-01, 1.151669813731e-02, 5.4421e-02, 1.4231e-03, - 2DIAGNOSTIC, 11, -9.235994634898e-01, 1.237284537598e-02, 5.6042e-02, 1.6210e-03, - 2DIAGNOSTIC, 12, -9.295974540535e-01, 1.224185251850e-02, 5.7768e-02, 1.7262e-03, - 2DIAGNOSTIC, 13, -9.314679437529e-01, 1.124725568828e-02, 5.9204e-02, 1.4360e-03, - 2DIAGNOSTIC, 14, -9.330519033014e-01, 9.589985853466e-03, 6.1245e-02, 2.0411e-03, - 2DIAGNOSTIC, 15, -9.354552014023e-01, 7.466209757819e-03, 6.2892e-02, 1.6470e-03, - 2DIAGNOSTIC, 16, -9.377294150879e-01, 5.085840760121e-03, 6.4529e-02, 1.6370e-03, - 2DIAGNOSTIC, 17, -9.403742219947e-01, 2.788920744019e-03, 6.5922e-02, 1.3931e-03, - 2DIAGNOSTIC, 18, -9.415116776482e-01, 1.419089726643e-03, 6.7557e-02, 1.6351e-03, - 2DIAGNOSTIC, 19, -9.417592169324e-01, 9.597360215640e-04, 6.9141e-02, 1.5841e-03, - 2DIAGNOSTIC, 20, -9.417732993305e-01, 6.463282488060e-04, 7.0558e-02, 1.4169e-03, - 2DIAGNOSTIC, 21, -9.417850259600e-01, 4.732554102232e-04, 7.1998e-02, 1.4400e-03, - 2DIAGNOSTIC, 22, -9.418136245602e-01, 3.608723630811e-04, 7.3413e-02, 1.4150e-03, - 2DIAGNOSTIC, 23, -9.418565767324e-01, 2.520427102718e-04, 7.8730e-02, 5.3170e-03, - 2DIAGNOSTIC, 24, -9.418565753627e-01, 1.505266079661e-04, 8.3760e-02, 5.0299e-03, - 2DIAGNOSTIC, 25, -9.418565753626e-01, 7.425415836558e-05, 8.6710e-02, 2.9500e-03, - 2DIAGNOSTIC, 26, -9.418565753626e-01, 2.458742027808e-05, 8.8247e-02, 1.5371e-03, - 2DIAGNOSTIC, 27, -9.418565753626e-01, 7.489409270853e-06, 8.9739e-02, 1.4920e-03, - 2DIAGNOSTIC, 28, -9.418565753626e-01, 3.929157241470e-06, 9.1474e-02, 1.7350e-03, - 2DIAGNOSTIC, 29, -9.418565753626e-01, 3.080807654703e-06, 9.2982e-02, 1.5080e-03, - 2DIAGNOSTIC, 30, -9.418565753626e-01, 2.266321435830e-06, 9.4859e-02, 1.8771e-03, - 2DIAGNOSTIC, 31, -9.418565753626e-01, 1.514664365092e-06, 9.6327e-02, 1.4679e-03, - 2DIAGNOSTIC, 32, -9.418565753626e-01, 1.040960631193e-06, 9.7832e-02, 1.5049e-03, - 2DIAGNOSTIC, 33, -9.418565753626e-01, 1.007987928514e-06, 9.9149e-02, 1.3170e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.403526992493e-01, 1.797693134862e+308, 1.4208e-01, 4.2933e-02, - 2DIAGNOSTIC, 2, -5.407929005612e-01, 1.797693134862e+308, 1.4432e-01, 2.2349e-03, - 2DIAGNOSTIC, 3, -5.426148634562e-01, 1.797693134862e+308, 1.4664e-01, 2.3241e-03, - 2DIAGNOSTIC, 4, -5.449550043628e-01, 1.797693134862e+308, 1.4919e-01, 2.5449e-03, - 2DIAGNOSTIC, 5, -5.474913513273e-01, 1.797693134862e+308, 1.5146e-01, 2.2759e-03, - 2DIAGNOSTIC, 6, -5.502832718198e-01, 1.797693134862e+308, 1.5427e-01, 2.8050e-03, - 2DIAGNOSTIC, 7, -5.541006734090e-01, 1.797693134862e+308, 1.5621e-01, 1.9481e-03, - 2DIAGNOSTIC, 8, -5.636165144896e-01, 1.797693134862e+308, 1.5818e-01, 1.9698e-03, - 2DIAGNOSTIC, 9, -5.775678092433e-01, 1.797693134862e+308, 1.6032e-01, 2.1389e-03, - 2DIAGNOSTIC, 10, -6.077277786164e-01, 6.074498649410e-03, 1.6304e-01, 2.7139e-03, - 2DIAGNOSTIC, 11, -6.473364700853e-01, 8.893734958007e-03, 1.6567e-01, 2.6360e-03, - 2DIAGNOSTIC, 12, -6.627869340669e-01, 1.100045513597e-02, 1.6849e-01, 2.8179e-03, - 2DIAGNOSTIC, 13, -6.678713106987e-01, 1.201947686581e-02, 1.7142e-01, 2.9252e-03, - 2DIAGNOSTIC, 14, -6.708794473140e-01, 1.198481732268e-02, 1.7422e-01, 2.8059e-03, - 2DIAGNOSTIC, 15, -6.749881948431e-01, 1.106755818397e-02, 1.7769e-01, 3.4711e-03, - 2DIAGNOSTIC, 16, -6.776708620172e-01, 9.415717902177e-03, 1.8182e-01, 4.1270e-03, - 2DIAGNOSTIC, 17, -6.777706413681e-01, 7.230442393274e-03, 1.8496e-01, 3.1431e-03, - 2DIAGNOSTIC, 18, -6.780382776965e-01, 4.921770023507e-03, 1.8751e-01, 2.5489e-03, - 2DIAGNOSTIC, 19, -6.783157125897e-01, 2.773671731423e-03, 1.8989e-01, 2.3730e-03, - 2DIAGNOSTIC, 20, -6.786418640488e-01, 1.289780590474e-03, 1.9223e-01, 2.3410e-03, - 2DIAGNOSTIC, 21, -6.790921790917e-01, 7.114995817805e-04, 1.9578e-01, 3.5532e-03, - 2DIAGNOSTIC, 22, -6.792699913856e-01, 4.491567681920e-04, 1.9891e-01, 3.1290e-03, - 2DIAGNOSTIC, 23, -6.787998166373e-01, 2.617091634513e-04, 2.0135e-01, 2.4452e-03, - 2DIAGNOSTIC, 24, -6.787900933753e-01, 1.224545991319e-04, 2.0374e-01, 2.3849e-03, - 2DIAGNOSTIC, 25, -6.787981641627e-01, 5.707200284377e-05, 2.0647e-01, 2.7261e-03, - 2DIAGNOSTIC, 26, -6.789621031738e-01, 4.113459163576e-05, 2.0884e-01, 2.3751e-03, - 2DIAGNOSTIC, 27, -6.791832791759e-01, 2.797061561148e-05, 2.1151e-01, 2.6729e-03, - 2DIAGNOSTIC, 28, -6.792777190401e-01, 1.921534619385e-05, 2.1381e-01, 2.3010e-03, - 2DIAGNOSTIC, 29, -6.792590864470e-01, 1.346426131837e-05, 2.1644e-01, 2.6250e-03, - 2DIAGNOSTIC, 30, -6.791099583214e-01, 9.394436339828e-06, 2.1966e-01, 3.2179e-03, - 2DIAGNOSTIC, 31, -6.792105888660e-01, 1.262176049904e-05, 2.2392e-01, 4.2601e-03, - 2DIAGNOSTIC, 32, -6.792104791811e-01, 1.706928407980e-05, 2.2619e-01, 2.2759e-03, - 2DIAGNOSTIC, 33, -6.792138876901e-01, 1.342418858127e-05, 2.2846e-01, 2.2659e-03, - 2DIAGNOSTIC, 34, -6.792178758696e-01, 8.853051975413e-06, 2.3101e-01, 2.5530e-03, - 2DIAGNOSTIC, 35, -6.792194687084e-01, 3.955448599637e-06, 2.3337e-01, 2.3611e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.041553259511e-01, 1.797693134862e+308, 3.0021e-01, 6.6840e-02, - 2DIAGNOSTIC, 2, -5.047820198042e-01, 1.797693134862e+308, 3.1047e-01, 1.0255e-02, - 2DIAGNOSTIC, 3, -5.055987022506e-01, 1.797693134862e+308, 3.2148e-01, 1.1011e-02, - 2DIAGNOSTIC, 4, -5.064858526061e-01, 1.797693134862e+308, 3.3184e-01, 1.0364e-02, - 2DIAGNOSTIC, 5, -5.076777198144e-01, 1.797693134862e+308, 3.4324e-01, 1.1400e-02, - 2DIAGNOSTIC, 6, -5.095296040729e-01, 1.797693134862e+308, 3.5471e-01, 1.1465e-02, - 2DIAGNOSTIC, 7, -5.112262941426e-01, 1.797693134862e+308, 3.6612e-01, 1.1407e-02, - 2DIAGNOSTIC, 8, -5.127290762082e-01, 1.797693134862e+308, 3.7745e-01, 1.1336e-02, - 2DIAGNOSTIC, 9, -5.142940623498e-01, 1.797693134862e+308, 3.9076e-01, 1.3312e-02, - 2DIAGNOSTIC, 10, -5.152148303757e-01, 1.504393249423e-03, 4.0487e-01, 1.4102e-02, - 2DIAGNOSTIC, 11, -5.155381910300e-01, 1.385503444319e-03, 4.2397e-01, 1.9109e-02, - 2DIAGNOSTIC, 12, -5.158833206997e-01, 1.207492948163e-03, 4.3574e-01, 1.1768e-02, - 2DIAGNOSTIC, 13, -5.161026901216e-01, 9.923698963533e-04, 4.4769e-01, 1.1947e-02, - 2DIAGNOSTIC, 14, -5.163425469480e-01, 7.625187681981e-04, 4.6064e-01, 1.2951e-02, - 2DIAGNOSTIC, 15, -5.166173369917e-01, 5.474755581511e-04, 4.8180e-01, 2.1161e-02, - 2DIAGNOSTIC, 16, -5.166508331081e-01, 3.744467677833e-04, 4.9346e-01, 1.1657e-02, - 2DIAGNOSTIC, 17, -5.168543910374e-01, 2.493663042629e-04, 5.0464e-01, 1.1180e-02, - 2DIAGNOSTIC, 18, -5.170612518727e-01, 1.670476310905e-04, 5.1522e-01, 1.0577e-02, - 2DIAGNOSTIC, 19, -5.172113772283e-01, 1.274571943954e-04, 5.2555e-01, 1.0334e-02, - 2DIAGNOSTIC, 20, -5.172883510573e-01, 1.076652551874e-04, 5.3752e-01, 1.1973e-02, - 2DIAGNOSTIC, 21, -5.173392797559e-01, 8.969796622050e-05, 5.4832e-01, 1.0802e-02, - 2DIAGNOSTIC, 22, -5.173414087868e-01, 7.385428303103e-05, 5.6746e-01, 1.9137e-02, - 2DIAGNOSTIC, 23, -5.173296732558e-01, 5.747943037206e-05, 5.7934e-01, 1.1876e-02, - 2DIAGNOSTIC, 24, -5.173296998450e-01, 4.260276775251e-05, 5.9270e-01, 1.3364e-02, - 2DIAGNOSTIC, 25, -5.173254000703e-01, 3.109579926455e-05, 6.0347e-01, 1.0766e-02, - 2DIAGNOSTIC, 26, -5.173157247830e-01, 1.813812924704e-05, 6.1436e-01, 1.0896e-02, - 2DIAGNOSTIC, 27, -5.173156305564e-01, 8.663131226917e-06, 6.2705e-01, 1.2688e-02, - 2DIAGNOSTIC, 28, -5.173233142051e-01, 3.349456041968e-06, 6.3749e-01, 1.0440e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.347165447084e-01, 1.797693134862e+308, 8.4596e-01, 2.0847e-01, - Elapsed time (stage 0): 8.6961e-01 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.730029411892e-01, 1.797693134862e+308, 3.5389e-02, 3.5389e-02, - 2DIAGNOSTIC, 2, -9.747078582048e-01, 1.797693134862e+308, 3.6872e-02, 1.4830e-03, - 2DIAGNOSTIC, 3, -9.762974561025e-01, 1.797693134862e+308, 3.8127e-02, 1.2550e-03, - 2DIAGNOSTIC, 4, -9.777979214654e-01, 1.797693134862e+308, 3.9383e-02, 1.2560e-03, - 2DIAGNOSTIC, 5, -9.827624022289e-01, 1.797693134862e+308, 4.0894e-02, 1.5111e-03, - 2DIAGNOSTIC, 6, -9.896350812227e-01, 1.797693134862e+308, 4.2411e-02, 1.5168e-03, - 2DIAGNOSTIC, 7, -9.892329890354e-01, 1.797693134862e+308, 4.3924e-02, 1.5130e-03, - 2DIAGNOSTIC, 8, -9.881958164403e-01, 1.797693134862e+308, 4.5462e-02, 1.5378e-03, - 2DIAGNOSTIC, 9, -9.884995871844e-01, 1.797693134862e+308, 4.6823e-02, 1.3611e-03, - 2DIAGNOSTIC, 10, -9.885257710954e-01, 1.229221135285e-03, 4.8388e-02, 1.5650e-03, - 2DIAGNOSTIC, 11, -9.924343382321e-01, 1.011271986436e-03, 4.9897e-02, 1.5090e-03, - 2DIAGNOSTIC, 12, -9.936313296443e-01, 8.076856495585e-04, 5.1416e-02, 1.5192e-03, - 2DIAGNOSTIC, 13, -1.008451578388e+00, 9.296397050590e-04, 5.3151e-02, 1.7350e-03, - 2DIAGNOSTIC, 14, -1.012667690383e+00, 1.058381599227e-03, 5.4886e-02, 1.7350e-03, - 2DIAGNOSTIC, 15, -1.024155856836e+00, 1.384123139975e-03, 5.6668e-02, 1.7819e-03, - 2DIAGNOSTIC, 16, -1.024994333425e+00, 1.677445037216e-03, 5.8844e-02, 2.1760e-03, - 2DIAGNOSTIC, 17, -1.025719577693e+00, 1.788736420089e-03, 6.0579e-02, 1.7350e-03, - 2DIAGNOSTIC, 18, -1.027455115050e+00, 1.732805856889e-03, 6.2053e-02, 1.4739e-03, - 2DIAGNOSTIC, 19, -1.029722223734e+00, 1.559159445938e-03, 6.3534e-02, 1.4808e-03, - 2DIAGNOSTIC, 20, -1.032586349874e+00, 1.298356904901e-03, 6.5099e-02, 1.5659e-03, - 2DIAGNOSTIC, 21, -1.035916637850e+00, 1.041911219237e-03, 6.6556e-02, 1.4560e-03, - 2DIAGNOSTIC, 22, -1.040269253580e+00, 7.808588298886e-04, 6.8304e-02, 1.7481e-03, - 2DIAGNOSTIC, 23, -1.039243651165e+00, 6.395478396130e-04, 6.9996e-02, 1.6921e-03, - 2DIAGNOSTIC, 24, -1.044422480295e+00, 5.584111226508e-04, 7.2484e-02, 2.4881e-03, - 2DIAGNOSTIC, 25, -1.046379365310e+00, 5.816856995087e-04, 7.4180e-02, 1.6961e-03, - 2DIAGNOSTIC, 26, -1.047298894699e+00, 5.669982067787e-04, 7.5889e-02, 1.7090e-03, - 2DIAGNOSTIC, 27, -1.048402135311e+00, 5.194852597829e-04, 7.7395e-02, 1.5059e-03, - 2DIAGNOSTIC, 28, -1.051819403407e+00, 4.784303785366e-04, 7.8875e-02, 1.4799e-03, - 2DIAGNOSTIC, 29, -1.056376628252e+00, 4.599149411298e-04, 8.0422e-02, 1.5471e-03, - 2DIAGNOSTIC, 30, -1.064459776126e+00, 4.996063366252e-04, 8.2136e-02, 1.7140e-03, - 2DIAGNOSTIC, 31, -1.069184052064e+00, 5.601939333245e-04, 8.3872e-02, 1.7359e-03, - 2DIAGNOSTIC, 32, -1.072400755997e+00, 6.309034088069e-04, 8.5619e-02, 1.7471e-03, - 2DIAGNOSTIC, 33, -1.071126425475e+00, 6.173051028464e-04, 8.7565e-02, 1.9462e-03, - 2DIAGNOSTIC, 34, -1.074394705481e+00, 6.151700729432e-04, 8.9275e-02, 1.7099e-03, - 2DIAGNOSTIC, 35, -1.077372978258e+00, 5.925094665231e-04, 9.0996e-02, 1.7209e-03, - 2DIAGNOSTIC, 36, -1.082265755434e+00, 5.588609041780e-04, 9.2923e-02, 1.9269e-03, - 2DIAGNOSTIC, 37, -1.085266605743e+00, 5.045416268247e-04, 9.4397e-02, 1.4741e-03, - 2DIAGNOSTIC, 38, -1.086426147062e+00, 4.390585088597e-04, 9.5898e-02, 1.5011e-03, - 2DIAGNOSTIC, 39, -1.087857345832e+00, 3.770441521151e-04, 9.7409e-02, 1.5111e-03, - 2DIAGNOSTIC, 40, -1.089274007555e+00, 3.466675268175e-04, 9.8925e-02, 1.5161e-03, - 2DIAGNOSTIC, 41, -1.090978457994e+00, 3.269166590491e-04, 1.0084e-01, 1.9150e-03, - 2DIAGNOSTIC, 42, -1.089571233195e+00, 2.891860402658e-04, 1.0256e-01, 1.7159e-03, - 2DIAGNOSTIC, 43, -1.089123972427e+00, 2.152437878708e-04, 1.0406e-01, 1.5049e-03, - 2DIAGNOSTIC, 44, -1.088774145947e+00, 1.426100543360e-04, 1.0584e-01, 1.7769e-03, - 2DIAGNOSTIC, 45, -1.090491531369e+00, 8.752554970029e-05, 1.0833e-01, 2.4970e-03, - 2DIAGNOSTIC, 46, -1.090568155803e+00, 5.537853079390e-05, 1.0985e-01, 1.5161e-03, - 2DIAGNOSTIC, 47, -1.090973688719e+00, 3.946223704207e-05, 1.1142e-01, 1.5681e-03, - 2DIAGNOSTIC, 48, -1.091653617301e+00, 3.119044223830e-05, 1.1302e-01, 1.6022e-03, - 2DIAGNOSTIC, 49, -1.091886389695e+00, 2.930303304349e-05, 1.1456e-01, 1.5390e-03, - 2DIAGNOSTIC, 50, -1.092249492733e+00, 3.394137159534e-05, 1.1658e-01, 2.0149e-03, - 2DIAGNOSTIC, 51, -1.092395491968e+00, 4.519933133845e-05, 1.1856e-01, 1.9879e-03, - 2DIAGNOSTIC, 52, -1.092491529402e+00, 4.504151019533e-05, 1.2042e-01, 1.8599e-03, - 2DIAGNOSTIC, 53, -1.092673352215e+00, 3.938982603623e-05, 1.2231e-01, 1.8859e-03, - 2DIAGNOSTIC, 54, -1.091799295074e+00, 2.382992771285e-05, 1.2418e-01, 1.8730e-03, - 2DIAGNOSTIC, 55, -1.091909532334e+00, 1.581606600223e-05, 1.2618e-01, 2.0001e-03, - 2DIAGNOSTIC, 56, -1.091966200863e+00, 7.214416947957e-06, 1.2815e-01, 1.9689e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.494149121303e-01, 1.797693134862e+308, 1.7410e-01, 4.5946e-02, - 2DIAGNOSTIC, 2, -7.495778865920e-01, 1.797693134862e+308, 1.7767e-01, 3.5729e-03, - 2DIAGNOSTIC, 3, -7.507111822389e-01, 1.797693134862e+308, 1.8098e-01, 3.3140e-03, - 2DIAGNOSTIC, 4, -7.527529157855e-01, 1.797693134862e+308, 1.8369e-01, 2.7070e-03, - 2DIAGNOSTIC, 5, -7.546940214631e-01, 1.797693134862e+308, 1.8608e-01, 2.3868e-03, - 2DIAGNOSTIC, 6, -7.568211015108e-01, 1.797693134862e+308, 1.8918e-01, 3.0992e-03, - 2DIAGNOSTIC, 7, -7.592939042267e-01, 1.797693134862e+308, 1.9368e-01, 4.5068e-03, - 2DIAGNOSTIC, 8, -7.593221446702e-01, 1.797693134862e+308, 1.9603e-01, 2.3499e-03, - 2DIAGNOSTIC, 9, -7.594045471935e-01, 1.797693134862e+308, 1.9845e-01, 2.4140e-03, - 2DIAGNOSTIC, 10, -7.594779185704e-01, 1.060712362772e-03, 2.0118e-01, 2.7361e-03, - 2DIAGNOSTIC, 11, -7.596787849048e-01, 8.577685451222e-04, 2.0384e-01, 2.6531e-03, - 2DIAGNOSTIC, 12, -7.599653208232e-01, 6.253405447364e-04, 2.0637e-01, 2.5349e-03, - 2DIAGNOSTIC, 13, -7.604518014631e-01, 4.190162520059e-04, 2.0904e-01, 2.6648e-03, - 2DIAGNOSTIC, 14, -7.609673752319e-01, 2.731390412521e-04, 2.1186e-01, 2.8191e-03, - 2DIAGNOSTIC, 15, -7.613338024968e-01, 1.789241959651e-04, 2.1485e-01, 2.9991e-03, - 2DIAGNOSTIC, 16, -7.616099915280e-01, 1.350695117824e-04, 2.1814e-01, 3.2890e-03, - 2DIAGNOSTIC, 17, -7.617362837436e-01, 1.414942736861e-04, 2.2660e-01, 8.4541e-03, - 2DIAGNOSTIC, 18, -7.617362806054e-01, 1.348182869679e-04, 2.2919e-01, 2.5890e-03, - 2DIAGNOSTIC, 19, -7.617363124710e-01, 1.181327351530e-04, 2.3177e-01, 2.5830e-03, - 2DIAGNOSTIC, 20, -7.617363663397e-01, 9.365405039178e-05, 2.3437e-01, 2.5990e-03, - 2DIAGNOSTIC, 21, -7.617364573858e-01, 6.652202364461e-05, 2.3695e-01, 2.5768e-03, - 2DIAGNOSTIC, 22, -7.617366112140e-01, 4.059868860866e-05, 2.3951e-01, 2.5659e-03, - 2DIAGNOSTIC, 23, -7.617368709659e-01, 2.110233819586e-05, 2.4210e-01, 2.5930e-03, - 2DIAGNOSTIC, 24, -7.617373091493e-01, 9.363417225530e-06, 2.4487e-01, 2.7690e-03, - 2DIAGNOSTIC, 25, -7.617380472797e-01, 3.217622996175e-06, 2.4758e-01, 2.7039e-03, - 2DIAGNOSTIC, 26, -7.617392892335e-01, 1.307295430672e-06, 2.5013e-01, 2.5499e-03, - 2DIAGNOSTIC, 27, -7.617413650908e-01, 1.311348785719e-06, 2.5270e-01, 2.5702e-03, - 2DIAGNOSTIC, 28, -7.617448068886e-01, 1.348411551944e-06, 2.5529e-01, 2.5909e-03, - 2DIAGNOSTIC, 29, -7.618088063061e-01, 2.188897128406e-06, 2.5783e-01, 2.5432e-03, - 2DIAGNOSTIC, 30, -7.618180099559e-01, 2.963678531004e-06, 2.6037e-01, 2.5408e-03, - 2DIAGNOSTIC, 31, -7.618322130212e-01, 3.687541700471e-06, 2.6300e-01, 2.6238e-03, - 2DIAGNOSTIC, 32, -7.617945973874e-01, 3.684349250958e-06, 2.6613e-01, 3.1309e-03, - 2DIAGNOSTIC, 33, -7.618056332854e-01, 3.567101365225e-06, 2.6923e-01, 3.1021e-03, - 2DIAGNOSTIC, 34, -7.617570377726e-01, 2.662005964722e-06, 2.7183e-01, 2.6009e-03, - 2DIAGNOSTIC, 35, -7.617714721511e-01, 1.812569440741e-06, 2.7445e-01, 2.6240e-03, - 2DIAGNOSTIC, 36, -7.618500651242e-01, 1.755088029947e-06, 2.7704e-01, 2.5909e-03, - 2DIAGNOSTIC, 37, -7.618768457797e-01, 1.894537083772e-06, 2.7951e-01, 2.4660e-03, - 2DIAGNOSTIC, 38, -7.619076470640e-01, 2.256097476831e-06, 2.8218e-01, 2.6679e-03, - 2DIAGNOSTIC, 39, -7.618854505236e-01, 2.872041384945e-06, 2.8456e-01, 2.3849e-03, - 2DIAGNOSTIC, 40, -7.619497921038e-01, 3.952567290830e-06, 2.8691e-01, 2.3420e-03, - 2DIAGNOSTIC, 41, -7.621028814352e-01, 6.180609313119e-06, 2.8929e-01, 2.3839e-03, - 2DIAGNOSTIC, 42, -7.624681522900e-01, 1.065438304295e-05, 2.9168e-01, 2.3880e-03, - 2DIAGNOSTIC, 43, -7.636420157949e-01, 2.423035719187e-05, 2.9453e-01, 2.8532e-03, - 2DIAGNOSTIC, 44, -7.648236264970e-01, 4.434786774492e-05, 2.9722e-01, 2.6891e-03, - 2DIAGNOSTIC, 45, -7.654236856425e-01, 6.435859278316e-05, 3.0087e-01, 3.6519e-03, - 2DIAGNOSTIC, 46, -7.657025396302e-01, 8.039879327504e-05, 3.0333e-01, 2.4579e-03, - 2DIAGNOSTIC, 47, -7.660770221551e-01, 9.136940575696e-05, 3.0571e-01, 2.3830e-03, - 2DIAGNOSTIC, 48, -7.663564395716e-01, 9.545878005675e-05, 3.0834e-01, 2.6250e-03, - 2DIAGNOSTIC, 49, -7.665869775077e-01, 9.173694682981e-05, 3.1143e-01, 3.0901e-03, - 2DIAGNOSTIC, 50, -7.670597153722e-01, 8.349391639205e-05, 3.1455e-01, 3.1228e-03, - 2DIAGNOSTIC, 51, -7.680214065948e-01, 7.585430316594e-05, 3.1796e-01, 3.4080e-03, - 2DIAGNOSTIC, 52, -7.686183361708e-01, 6.794372827888e-05, 3.2180e-01, 3.8400e-03, - 2DIAGNOSTIC, 53, -7.686111530390e-01, 6.190195134628e-05, 3.2424e-01, 2.4400e-03, - 2DIAGNOSTIC, 54, -7.693796746464e-01, 6.373843514346e-05, 3.2693e-01, 2.6960e-03, - 2DIAGNOSTIC, 55, -7.705504078272e-01, 7.129471923844e-05, 3.2933e-01, 2.3949e-03, - 2DIAGNOSTIC, 56, -7.706590066993e-01, 7.404618206841e-05, 3.3235e-01, 3.0229e-03, - 2DIAGNOSTIC, 57, -7.705744249736e-01, 7.161866970855e-05, 3.3509e-01, 2.7380e-03, - 2DIAGNOSTIC, 58, -7.706327878368e-01, 6.482767135016e-05, 3.3743e-01, 2.3401e-03, - 2DIAGNOSTIC, 59, -7.707104827888e-01, 5.397158416550e-05, 3.4010e-01, 2.6720e-03, - 2DIAGNOSTIC, 60, -7.707448738476e-01, 4.120545089831e-05, 3.4278e-01, 2.6791e-03, - 2DIAGNOSTIC, 61, -7.706638124680e-01, 3.027146546663e-05, 3.4514e-01, 2.3630e-03, - 2DIAGNOSTIC, 62, -7.706539302228e-01, 2.056059670394e-05, 3.4781e-01, 2.6622e-03, - 2DIAGNOSTIC, 63, -7.706923879516e-01, 9.374258621523e-06, 3.5025e-01, 2.4469e-03, - 2DIAGNOSTIC, 64, -7.706340713623e-01, 1.601098882809e-06, 3.5268e-01, 2.4250e-03, - 2DIAGNOSTIC, 65, -7.707056385487e-01, 1.071814489537e-06, 3.5539e-01, 2.7101e-03, - 2DIAGNOSTIC, 66, -7.707605084988e-01, 1.445454345141e-06, 3.5906e-01, 3.6740e-03, - 2DIAGNOSTIC, 67, -7.708764816009e-01, 1.881508798738e-06, 3.6179e-01, 2.7230e-03, - 2DIAGNOSTIC, 68, -7.708337053695e-01, 2.227384205203e-06, 3.6457e-01, 2.7812e-03, - 2DIAGNOSTIC, 69, -7.709278391243e-01, 3.331470349076e-06, 3.6700e-01, 2.4321e-03, - 2DIAGNOSTIC, 70, -7.709463119997e-01, 4.410186181348e-06, 3.6969e-01, 2.6879e-03, - 2DIAGNOSTIC, 71, -7.710329030827e-01, 5.096067181368e-06, 3.7213e-01, 2.4412e-03, - 2DIAGNOSTIC, 72, -7.710536848023e-01, 5.353809658047e-06, 3.7455e-01, 2.4219e-03, - 2DIAGNOSTIC, 73, -7.715492692470e-01, 7.873410015851e-06, 3.7757e-01, 3.0160e-03, - 2DIAGNOSTIC, 74, -7.722636547380e-01, 1.283672190677e-05, 3.8029e-01, 2.7199e-03, - 2DIAGNOSTIC, 75, -7.726618556303e-01, 1.871951548061e-05, 3.8296e-01, 2.6789e-03, - 2DIAGNOSTIC, 76, -7.728925218434e-01, 2.408417761234e-05, 3.8564e-01, 2.6731e-03, - 2DIAGNOSTIC, 77, -7.729304060190e-01, 2.781492719324e-05, 3.8832e-01, 2.6789e-03, - 2DIAGNOSTIC, 78, -7.730477550660e-01, 2.914006320875e-05, 3.9106e-01, 2.7471e-03, - 2DIAGNOSTIC, 79, -7.732392224916e-01, 2.893641997482e-05, 3.9458e-01, 3.5160e-03, - 2DIAGNOSTIC, 80, -7.732030954063e-01, 2.586406471358e-05, 3.9772e-01, 3.1362e-03, - 2DIAGNOSTIC, 81, -7.733800438286e-01, 2.169468150727e-05, 4.0082e-01, 3.1018e-03, - 2DIAGNOSTIC, 82, -7.733364044563e-01, 1.545148431853e-05, 4.0363e-01, 2.8088e-03, - 2DIAGNOSTIC, 83, -7.733332732869e-01, 1.005579938913e-05, 4.0613e-01, 2.5051e-03, - 2DIAGNOSTIC, 84, -7.733356665033e-01, 6.984935625119e-06, 4.0897e-01, 2.8372e-03, - 2DIAGNOSTIC, 85, -7.733666628849e-01, 5.198791467877e-06, 4.1147e-01, 2.5010e-03, - 2DIAGNOSTIC, 86, -7.733458084402e-01, 3.894014490125e-06, 4.1467e-01, 3.2051e-03, - 2DIAGNOSTIC, 87, -7.732521493713e-01, 2.038813821300e-06, 4.1747e-01, 2.7971e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.769847749805e-01, 1.797693134862e+308, 4.8528e-01, 6.7811e-02, - 2DIAGNOSTIC, 2, -5.773090972534e-01, 1.797693134862e+308, 4.9948e-01, 1.4194e-02, - 2DIAGNOSTIC, 3, -5.777220993439e-01, 1.797693134862e+308, 5.1140e-01, 1.1926e-02, - 2DIAGNOSTIC, 4, -5.783215705320e-01, 1.797693134862e+308, 5.2654e-01, 1.5137e-02, - 2DIAGNOSTIC, 5, -5.790170405078e-01, 1.797693134862e+308, 5.3948e-01, 1.2938e-02, - 2DIAGNOSTIC, 6, -5.796314873574e-01, 1.797693134862e+308, 5.5667e-01, 1.7196e-02, - 2DIAGNOSTIC, 7, -5.798326555016e-01, 1.797693134862e+308, 5.7086e-01, 1.4188e-02, - 2DIAGNOSTIC, 8, -5.798349370357e-01, 1.797693134862e+308, 5.8474e-01, 1.3879e-02, - 2DIAGNOSTIC, 9, -5.798614285667e-01, 1.797693134862e+308, 5.9708e-01, 1.2335e-02, - 2DIAGNOSTIC, 10, -5.798821791860e-01, 3.673841730322e-04, 6.1185e-01, 1.4776e-02, - 2DIAGNOSTIC, 11, -5.798955596143e-01, 2.693174806739e-04, 6.2937e-01, 1.7523e-02, - 2DIAGNOSTIC, 12, -5.799028096511e-01, 1.773513038504e-04, 6.4512e-01, 1.5741e-02, - 2DIAGNOSTIC, 13, -5.799032666867e-01, 9.941466124486e-05, 6.6335e-01, 1.8232e-02, - 2DIAGNOSTIC, 14, -5.799010404206e-01, 4.442260107483e-05, 6.7758e-01, 1.4233e-02, - 2DIAGNOSTIC, 15, -5.799017802359e-01, 1.519350072041e-05, 6.9222e-01, 1.4636e-02, - 2DIAGNOSTIC, 16, -5.799012388016e-01, 7.075815317240e-06, 7.0679e-01, 1.4574e-02, - 2DIAGNOSTIC, 17, -5.798974287263e-01, 5.153644196051e-06, 7.2089e-01, 1.4099e-02, - 2DIAGNOSTIC, 18, -5.799041256983e-01, 3.381389899464e-06, 7.3358e-01, 1.2689e-02, - 2DIAGNOSTIC, 19, -5.799050716317e-01, 2.341238065244e-06, 7.4761e-01, 1.4028e-02, - 2DIAGNOSTIC, 20, -5.799090844517e-01, 1.943403564429e-06, 7.6112e-01, 1.3515e-02, - 2DIAGNOSTIC, 21, -5.799190913442e-01, 2.092077215576e-06, 7.7534e-01, 1.4220e-02, - 2DIAGNOSTIC, 22, -5.799213892978e-01, 2.381659757932e-06, 7.8801e-01, 1.2665e-02, - 2DIAGNOSTIC, 23, -5.799297640157e-01, 2.748689436158e-06, 8.0042e-01, 1.2413e-02, - 2DIAGNOSTIC, 24, -5.799793754420e-01, 3.921543983210e-06, 8.1327e-01, 1.2851e-02, - 2DIAGNOSTIC, 25, -5.800341273316e-01, 5.819683479506e-06, 8.2645e-01, 1.3178e-02, - 2DIAGNOSTIC, 26, -5.801622967175e-01, 9.535904814457e-06, 8.4171e-01, 1.5259e-02, - 2DIAGNOSTIC, 27, -5.803552823840e-01, 1.558547186518e-05, 8.5747e-01, 1.5760e-02, - 2DIAGNOSTIC, 28, -5.804356703052e-01, 2.131194976975e-05, 8.7440e-01, 1.6933e-02, - 2DIAGNOSTIC, 29, -5.804445754363e-01, 2.492257006162e-05, 8.8919e-01, 1.4787e-02, - 2DIAGNOSTIC, 30, -5.804809072855e-01, 2.673391515478e-05, 9.0426e-01, 1.5074e-02, - 2DIAGNOSTIC, 31, -5.805131197736e-01, 2.663630568839e-05, 9.2129e-01, 1.7032e-02, - 2DIAGNOSTIC, 32, -5.805181374560e-01, 2.418243959591e-05, 9.3554e-01, 1.4249e-02, - 2DIAGNOSTIC, 33, -5.805152313424e-01, 1.976026512382e-05, 9.5056e-01, 1.5020e-02, - 2DIAGNOSTIC, 34, -5.805152871237e-01, 1.457658332527e-05, 9.6484e-01, 1.4281e-02, - 2DIAGNOSTIC, 35, -5.805122707764e-01, 9.107470295672e-06, 9.7949e-01, 1.4643e-02, - 2DIAGNOSTIC, 36, -5.805092382845e-01, 4.797836577468e-06, 9.9255e-01, 1.3063e-02, - 2DIAGNOSTIC, 37, -5.805062058712e-01, 2.842414619030e-06, 1.0049e+00, 1.2398e-02, - 2DIAGNOSTIC, 38, -5.805032029378e-01, 1.809044279530e-06, 1.0174e+00, 1.2465e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.759293184383e-01, 1.797693134862e+308, 1.2434e+00, 2.2598e-01, - Elapsed time (stage 1): 1.2648e+00 - - -Total elapsed time: 2.1349e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:49:08 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 47 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 77 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 88.00% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 88.00% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[ 9154 2753 7599 7320 29273 7183 12969 410 255 1134 10425 211 - 0 0 924 0 257 595 0 648 0 665 382 0 - 0 901 0 0 0 272 261 0 0 0 0 0 - 0 0 0 0 0 0 0 0 0 0 0] -[160751 36231 70434 71812 25251 18124 16878 20475 15818 6668 - 5564 6038 7370 1927 5796 8820 6792 2531 8253 1519 - 5219 2538 1695 1364 1891 1399 1550 1754 2184 1649 - 1177 1267 1503 1563 630 1099 1159 1328 1303 999 - 1281 860 893 960 1158 1008 828] -[ 0 8706 0 420 0 9868 6178 0 25836 0 762 0 - 4067 14044 0 0 0 0 0 9172 0 0 5638 10232 - 0 2004 0 0 0 393 0 0 0 0 8401 0 - 0 6968 0 0 7049 0 0 0 0 0 0] -[ 2113 108116 1231 2117 3772 1638 84295 11926 2591 13810 - 10567 997 91189 1875 3356 3179 966 8594 1166 744 - 445 858 835 575 1951 5802 1094 5491 4551 1258 - 2019 1609 12767 1026 668 5877 1219 109947 3786 1062 - 2241 4101 3950 6282 1013 1352 855] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:58:12 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 10:58:19 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:03 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:03 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:03 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:24 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:05:35 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC004 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:07:13 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:08:13 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:12:16 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:12:18 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:14:22 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:14:24 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5615be062d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.2585, 122.949, -131.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5615bded9730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb7a3533010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5615be066020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.0727, -117.336] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5615be06c0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb79fe74010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5615be07c840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.2585, 122.949, -131.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5615be068890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb79b1a0010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5615be0803e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.0727, -117.336] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5615be06f130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb797ae1010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.538887335099e-01, 1.797693134862e+308, 3.2056e-01, 3.2056e-01, - 2DIAGNOSTIC, 2, -4.547151890938e-01, 1.797693134862e+308, 3.2191e-01, 1.3492e-03, - 2DIAGNOSTIC, 3, -4.571411666759e-01, 1.797693134862e+308, 3.2731e-01, 5.3961e-03, - 2DIAGNOSTIC, 4, -4.597114174792e-01, 1.797693134862e+308, 3.3287e-01, 5.5659e-03, - 2DIAGNOSTIC, 5, -4.684079895525e-01, 1.797693134862e+308, 3.3916e-01, 6.2881e-03, - 2DIAGNOSTIC, 6, -4.807115613134e-01, 1.797693134862e+308, 3.4476e-01, 5.5962e-03, - 2DIAGNOSTIC, 7, -4.909035909860e-01, 1.797693134862e+308, 3.4797e-01, 3.2110e-03, - 2DIAGNOSTIC, 8, -5.235478231521e-01, 1.797693134862e+308, 3.5675e-01, 8.7800e-03, - 2DIAGNOSTIC, 9, -5.238246197353e-01, 1.797693134862e+308, 3.5993e-01, 3.1841e-03, - 2DIAGNOSTIC, 10, -5.274624432896e-01, 1.158052901661e-02, 3.6176e-01, 1.8280e-03, - 2DIAGNOSTIC, 11, -5.286163526616e-01, 1.100162650468e-02, 3.6366e-01, 1.8990e-03, - 2DIAGNOSTIC, 12, -5.291628903279e-01, 9.601658518617e-03, 3.6532e-01, 1.6570e-03, - 2DIAGNOSTIC, 13, -5.313092836624e-01, 7.756910283184e-03, 3.6849e-01, 3.1729e-03, - 2DIAGNOSTIC, 14, -5.312950021685e-01, 5.592990017458e-03, 3.7067e-01, 2.1861e-03, - 2DIAGNOSTIC, 15, -5.324479483826e-01, 3.611278940761e-03, 3.7322e-01, 2.5449e-03, - 2DIAGNOSTIC, 16, -5.337119926255e-01, 2.045631973191e-03, 3.7477e-01, 1.5461e-03, - 2DIAGNOSTIC, 17, -5.352476941685e-01, 8.465190394572e-04, 3.7648e-01, 1.7118e-03, - 2DIAGNOSTIC, 18, -5.357900103450e-01, 7.477026920654e-04, 3.7943e-01, 2.9480e-03, - 2DIAGNOSTIC, 19, -5.358456881794e-01, 5.987187224225e-04, 3.8434e-01, 4.9140e-03, - 2DIAGNOSTIC, 20, -5.358460709134e-01, 5.121983299344e-04, 3.8669e-01, 2.3470e-03, - 2DIAGNOSTIC, 21, -5.358704270496e-01, 4.178640941850e-04, 3.8968e-01, 2.9981e-03, - 2DIAGNOSTIC, 22, -5.358852936841e-01, 3.060337933254e-04, 3.9357e-01, 3.8869e-03, - 2DIAGNOSTIC, 23, -5.355410256762e-01, 2.199201692340e-04, 3.9912e-01, 5.5480e-03, - 2DIAGNOSTIC, 24, -5.355573262159e-01, 1.212421853901e-04, 4.0361e-01, 4.4930e-03, - 2DIAGNOSTIC, 25, -5.355707346033e-01, 4.505628253691e-05, 4.0909e-01, 5.4779e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.184820547648e-01, 1.797693134862e+308, 7.3637e-01, 3.2728e-01, - 2DIAGNOSTIC, 2, -4.172928989069e-01, 1.797693134862e+308, 7.4022e-01, 3.8431e-03, - 2DIAGNOSTIC, 3, -4.183352444314e-01, 1.797693134862e+308, 7.4399e-01, 3.7780e-03, - 2DIAGNOSTIC, 4, -4.206345924669e-01, 1.797693134862e+308, 7.4700e-01, 3.0091e-03, - 2DIAGNOSTIC, 5, -4.215624764205e-01, 1.797693134862e+308, 7.5277e-01, 5.7690e-03, - 2DIAGNOSTIC, 6, -4.244144321329e-01, 1.797693134862e+308, 7.5955e-01, 6.7780e-03, - 2DIAGNOSTIC, 7, -4.274525353403e-01, 1.797693134862e+308, 7.7180e-01, 1.2247e-02, - 2DIAGNOSTIC, 8, -4.383260169410e-01, 1.797693134862e+308, 7.8271e-01, 1.0913e-02, - 2DIAGNOSTIC, 9, -4.423961072956e-01, 1.797693134862e+308, 7.8782e-01, 5.1088e-03, - 2DIAGNOSTIC, 10, -4.441653769600e-01, 4.346705432250e-03, 7.9330e-01, 5.4781e-03, - 2DIAGNOSTIC, 11, -4.444561122140e-01, 4.421029815705e-03, 7.9640e-01, 3.1040e-03, - 2DIAGNOSTIC, 12, -4.453461702642e-01, 4.069854931645e-03, 8.0769e-01, 1.1286e-02, - 2DIAGNOSTIC, 13, -4.463509557318e-01, 3.500615394471e-03, 8.2336e-01, 1.5676e-02, - 2DIAGNOSTIC, 14, -4.465292165109e-01, 2.811161202990e-03, 8.3123e-01, 7.8700e-03, - 2DIAGNOSTIC, 15, -4.464305450950e-01, 2.001495028645e-03, 8.4295e-01, 1.1717e-02, - 2DIAGNOSTIC, 16, -4.467323816736e-01, 1.246586762329e-03, 8.5131e-01, 8.3621e-03, - 2DIAGNOSTIC, 17, -4.468953960391e-01, 5.814815319834e-04, 8.5835e-01, 7.0400e-03, - 2DIAGNOSTIC, 18, -4.471875381519e-01, 3.391914129282e-04, 8.7432e-01, 1.5963e-02, - 2DIAGNOSTIC, 19, -4.476144993179e-01, 2.445860556823e-04, 8.9650e-01, 2.2181e-02, - 2DIAGNOSTIC, 20, -4.482035453602e-01, 2.142324449496e-04, 9.3152e-01, 3.5020e-02, - 2DIAGNOSTIC, 21, -4.486218830224e-01, 1.882814661344e-04, 9.4950e-01, 1.7985e-02, - 2DIAGNOSTIC, 22, -4.486361472437e-01, 1.730850295851e-04, 9.5193e-01, 2.4252e-03, - 2DIAGNOSTIC, 23, -4.487561398535e-01, 1.750592281771e-04, 9.5457e-01, 2.6469e-03, - 2DIAGNOSTIC, 24, -4.495131409394e-01, 1.858827046127e-04, 9.5685e-01, 2.2759e-03, - 2DIAGNOSTIC, 25, -4.503162022329e-01, 1.958145822493e-04, 9.6020e-01, 3.3541e-03, - 2DIAGNOSTIC, 26, -4.503915589778e-01, 1.956779025798e-04, 9.6254e-01, 2.3401e-03, - 2DIAGNOSTIC, 27, -4.509339197450e-01, 1.946853516494e-04, 9.6591e-01, 3.3700e-03, - 2DIAGNOSTIC, 28, -4.515800885126e-01, 1.970274231694e-04, 9.6865e-01, 2.7390e-03, - 2DIAGNOSTIC, 29, -4.515691627147e-01, 1.891103620606e-04, 9.7110e-01, 2.4452e-03, - 2DIAGNOSTIC, 30, -4.514218762402e-01, 1.732505205410e-04, 9.7389e-01, 2.7881e-03, - 2DIAGNOSTIC, 31, -4.515073104050e-01, 1.530568864461e-04, 9.9898e-01, 2.5095e-02, - 2DIAGNOSTIC, 32, -4.515528498403e-01, 1.210105619253e-04, 1.0037e+00, 4.7202e-03, - 2DIAGNOSTIC, 33, -4.517616198830e-01, 8.546007659880e-05, 1.0174e+00, 1.3657e-02, - 2DIAGNOSTIC, 34, -4.518722642172e-01, 6.005807972365e-05, 1.0268e+00, 9.4869e-03, - 2DIAGNOSTIC, 35, -4.521290988689e-01, 5.027477346174e-05, 1.0399e+00, 1.3046e-02, - 2DIAGNOSTIC, 36, -4.524254399128e-01, 4.277069021371e-05, 1.0553e+00, 1.5457e-02, - 2DIAGNOSTIC, 37, -4.523915147331e-01, 4.004755640821e-05, 1.0631e+00, 7.7760e-03, - 2DIAGNOSTIC, 38, -4.524439705898e-01, 4.559759629396e-05, 1.0719e+00, 8.7659e-03, - 2DIAGNOSTIC, 39, -4.526174893024e-01, 4.935138956632e-05, 1.0778e+00, 5.8930e-03, - 2DIAGNOSTIC, 40, -4.528969755683e-01, 5.025529780565e-05, 1.0838e+00, 6.0248e-03, - 2DIAGNOSTIC, 41, -4.529867342007e-01, 4.900856651786e-05, 1.0881e+00, 4.3321e-03, - 2DIAGNOSTIC, 42, -4.531821967251e-01, 4.692572582621e-05, 1.0907e+00, 2.5601e-03, - 2DIAGNOSTIC, 43, -4.532452888352e-01, 4.462510077113e-05, 1.0931e+00, 2.3899e-03, - 2DIAGNOSTIC, 44, -4.533039159848e-01, 4.060210443334e-05, 1.0954e+00, 2.2862e-03, - 2DIAGNOSTIC, 45, -4.535154925135e-01, 3.943345647728e-05, 1.0976e+00, 2.2600e-03, - 2DIAGNOSTIC, 46, -4.540091361995e-01, 4.553008017844e-05, 1.0996e+00, 2.0020e-03, - 2DIAGNOSTIC, 47, -4.543607050154e-01, 5.125692060350e-05, 1.1127e+00, 1.3038e-02, - 2DIAGNOSTIC, 48, -4.545638611508e-01, 5.525731534434e-05, 1.1233e+00, 1.0634e-02, - 2DIAGNOSTIC, 49, -4.545452934432e-01, 5.588845964869e-05, 1.1443e+00, 2.0942e-02, - 2DIAGNOSTIC, 50, -4.545064739978e-01, 5.431862302029e-05, 1.1566e+00, 1.2298e-02, - 2DIAGNOSTIC, 51, -4.547621030787e-01, 5.185318255949e-05, 1.1666e+00, 1.0081e-02, - 2DIAGNOSTIC, 52, -4.553695031918e-01, 5.422725584185e-05, 1.1783e+00, 1.1693e-02, - 2DIAGNOSTIC, 53, -4.557020012440e-01, 5.598913408360e-05, 1.1876e+00, 9.2909e-03, - 2DIAGNOSTIC, 54, -4.556338261722e-01, 5.234359136197e-05, 1.1951e+00, 7.4711e-03, - 2DIAGNOSTIC, 55, -4.558833156976e-01, 4.930106706233e-05, 1.2125e+00, 1.7386e-02, - 2DIAGNOSTIC, 56, -4.559194263516e-01, 4.751355347024e-05, 1.2251e+00, 1.2665e-02, - 2DIAGNOSTIC, 57, -4.559786359648e-01, 4.565745702207e-05, 1.2293e+00, 4.1800e-03, - 2DIAGNOSTIC, 58, -4.561042637408e-01, 4.312853853733e-05, 1.2328e+00, 3.4769e-03, - 2DIAGNOSTIC, 59, -4.561095628013e-01, 3.656809413936e-05, 1.2353e+00, 2.4941e-03, - 2DIAGNOSTIC, 60, -4.568077148521e-01, 3.378167298600e-05, 1.2377e+00, 2.3658e-03, - 2DIAGNOSTIC, 61, -4.570450361583e-01, 3.266468193190e-05, 1.2489e+00, 1.1291e-02, - 2DIAGNOSTIC, 62, -4.570959821677e-01, 3.516682329571e-05, 1.2579e+00, 8.9121e-03, - 2DIAGNOSTIC, 63, -4.574020579723e-01, 4.084334944406e-05, 1.2694e+00, 1.1512e-02, - 2DIAGNOSTIC, 64, -4.580893084773e-01, 4.845787007745e-05, 1.2784e+00, 8.9979e-03, - 2DIAGNOSTIC, 65, -4.588575158560e-01, 6.088378133521e-05, 1.2878e+00, 9.4259e-03, - 2DIAGNOSTIC, 66, -4.598689423270e-01, 7.701273153510e-05, 1.2925e+00, 4.6690e-03, - 2DIAGNOSTIC, 67, -4.599319125325e-01, 8.639936815424e-05, 1.3151e+00, 2.2620e-02, - 2DIAGNOSTIC, 68, -4.603459771461e-01, 9.250161893691e-05, 1.3235e+00, 8.4670e-03, - 2DIAGNOSTIC, 69, -4.604499267564e-01, 9.031311275437e-05, 1.3293e+00, 5.7871e-03, - 2DIAGNOSTIC, 70, -4.605437025406e-01, 8.652801965983e-05, 1.3434e+00, 1.4084e-02, - 2DIAGNOSTIC, 71, -4.605020471868e-01, 7.628569930861e-05, 1.3504e+00, 7.0288e-03, - 2DIAGNOSTIC, 72, -4.605623630313e-01, 6.008462581874e-05, 1.3568e+00, 6.3400e-03, - 2DIAGNOSTIC, 73, -4.606538252834e-01, 4.200882038507e-05, 1.3728e+00, 1.5973e-02, - 2DIAGNOSTIC, 74, -4.607051071434e-01, 2.660062878690e-05, 1.3758e+00, 2.9950e-03, - 2DIAGNOSTIC, 75, -4.606548984147e-01, 1.494412367798e-05, 1.3787e+00, 2.9430e-03, - 2DIAGNOSTIC, 76, -4.606137061264e-01, 1.033244295733e-05, 1.3811e+00, 2.4340e-03, - 2DIAGNOSTIC, 77, -4.605116277110e-01, 4.494005306907e-06, 1.3838e+00, 2.6441e-03, - 2DIAGNOSTIC, 78, -4.605999156189e-01, 2.456010287855e-06, 1.3868e+00, 3.0010e-03, - 2DIAGNOSTIC, 79, -4.606311177379e-01, 1.291944828277e-06, 1.3898e+00, 3.0470e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.527016977609e-01, 1.797693134862e+308, 1.7525e+00, 3.6263e-01, - 2DIAGNOSTIC, 2, -3.535351748703e-01, 1.797693134862e+308, 1.7692e+00, 1.6785e-02, - 2DIAGNOSTIC, 3, -3.543617073152e-01, 1.797693134862e+308, 1.7969e+00, 2.7630e-02, - 2DIAGNOSTIC, 4, -3.548993659720e-01, 1.797693134862e+308, 1.8289e+00, 3.2051e-02, - 2DIAGNOSTIC, 5, -3.562022405039e-01, 1.797693134862e+308, 1.8633e+00, 3.4342e-02, - 2DIAGNOSTIC, 6, -3.611853558294e-01, 1.797693134862e+308, 1.8896e+00, 2.6379e-02, - 2DIAGNOSTIC, 7, -3.664369980719e-01, 1.797693134862e+308, 1.9296e+00, 3.9962e-02, - 2DIAGNOSTIC, 8, -3.697852017847e-01, 1.797693134862e+308, 1.9541e+00, 2.4458e-02, - 2DIAGNOSTIC, 9, -3.741738723253e-01, 1.797693134862e+308, 1.9792e+00, 2.5188e-02, - 2DIAGNOSTIC, 10, -3.777019087953e-01, 4.717947789701e-03, 2.0108e+00, 3.1504e-02, - 2DIAGNOSTIC, 11, -3.851335751990e-01, 5.162656470192e-03, 2.0509e+00, 4.0149e-02, - 2DIAGNOSTIC, 12, -3.908385048946e-01, 5.471110045551e-03, 2.0836e+00, 3.2675e-02, - 2DIAGNOSTIC, 13, -3.942676316076e-01, 5.485045557379e-03, 2.1186e+00, 3.5001e-02, - 2DIAGNOSTIC, 14, -4.058170872924e-01, 5.656716624506e-03, 2.1521e+00, 3.3558e-02, - 2DIAGNOSTIC, 15, -4.149129819236e-01, 5.792083483269e-03, 2.1767e+00, 2.4528e-02, - 2DIAGNOSTIC, 16, -4.516444951734e-01, 7.291660251705e-03, 2.2207e+00, 4.4031e-02, - 2DIAGNOSTIC, 17, -4.923521653455e-01, 9.824954204938e-03, 2.2626e+00, 4.1948e-02, - 2DIAGNOSTIC, 18, -5.382437507708e-01, 1.298496496068e-02, 2.2991e+00, 3.6432e-02, - 2DIAGNOSTIC, 19, -5.636717074194e-01, 1.556303166953e-02, 2.3333e+00, 3.4197e-02, - 2DIAGNOSTIC, 20, -5.799401047867e-01, 1.702275436220e-02, 2.3721e+00, 3.8817e-02, - 2DIAGNOSTIC, 21, -5.817792459937e-01, 1.702545207220e-02, 2.4151e+00, 4.3032e-02, - 2DIAGNOSTIC, 22, -5.828323381617e-01, 1.566068375231e-02, 2.4499e+00, 3.4743e-02, - 2DIAGNOSTIC, 23, -5.854139358252e-01, 1.316960663892e-02, 2.4975e+00, 4.7625e-02, - 2DIAGNOSTIC, 24, -5.859669711127e-01, 1.006656562742e-02, 2.5542e+00, 5.6711e-02, - 2DIAGNOSTIC, 25, -5.868316285152e-01, 6.605708538581e-03, 2.5718e+00, 1.7566e-02, - 2DIAGNOSTIC, 26, -5.872992197746e-01, 3.770162601328e-03, 2.6017e+00, 2.9977e-02, - 2DIAGNOSTIC, 27, -5.872908564840e-01, 1.773488230661e-03, 2.6648e+00, 6.3015e-02, - 2DIAGNOSTIC, 28, -5.872975552100e-01, 7.905953735707e-04, 2.7058e+00, 4.1071e-02, - 2DIAGNOSTIC, 29, -5.872845032656e-01, 3.446833455459e-04, 2.7209e+00, 1.5099e-02, - 2DIAGNOSTIC, 30, -5.872705299094e-01, 2.311248407724e-04, 2.7573e+00, 3.6405e-02, - 2DIAGNOSTIC, 31, -5.872407527341e-01, 1.400747938205e-04, 2.7947e+00, 3.7399e-02, - 2DIAGNOSTIC, 32, -5.872260667516e-01, 6.128424573287e-05, 2.8443e+00, 4.9542e-02, - 2DIAGNOSTIC, 33, -5.872276015422e-01, 2.900028346870e-05, 2.8692e+00, 2.4894e-02, - 2DIAGNOSTIC, 34, -5.872291310294e-01, 5.639805949635e-06, 2.8820e+00, 1.2815e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.936158257367e-01, 1.797693134862e+308, 3.6468e+00, 7.6481e-01, - 2DIAGNOSTIC, 2, -4.937766531123e-01, 1.797693134862e+308, 3.8004e+00, 1.5355e-01, - 2DIAGNOSTIC, 3, -4.939499687329e-01, 1.797693134862e+308, 3.9539e+00, 1.5354e-01, - 2DIAGNOSTIC, 4, -4.941540378799e-01, 1.797693134862e+308, 4.1421e+00, 1.8818e-01, - 2DIAGNOSTIC, 5, -4.944760410404e-01, 1.797693134862e+308, 4.3277e+00, 1.8564e-01, - 2DIAGNOSTIC, 6, -4.953972481119e-01, 1.797693134862e+308, 4.6226e+00, 2.9489e-01, - 2DIAGNOSTIC, 7, -4.956567848374e-01, 1.797693134862e+308, 4.7651e+00, 1.4246e-01, - 2DIAGNOSTIC, 8, -4.958015811827e-01, 1.797693134862e+308, 4.9274e+00, 1.6229e-01, - 2DIAGNOSTIC, 9, -4.966118905282e-01, 1.797693134862e+308, 5.1237e+00, 1.9629e-01, - 2DIAGNOSTIC, 10, -4.973949364065e-01, 4.859524685459e-04, 5.2542e+00, 1.3053e-01, - 2DIAGNOSTIC, 11, -4.976658379765e-01, 4.872836202139e-04, 5.4014e+00, 1.4717e-01, - 2DIAGNOSTIC, 12, -4.976998908736e-01, 4.547315668063e-04, 5.6249e+00, 2.2356e-01, - 2DIAGNOSTIC, 13, -4.977039685897e-01, 3.951818238529e-04, 5.8552e+00, 2.3026e-01, - 2DIAGNOSTIC, 14, -4.977062978933e-01, 3.167017840697e-04, 6.0191e+00, 1.6396e-01, - 2DIAGNOSTIC, 15, -4.977067628006e-01, 2.309056722234e-04, 6.3070e+00, 2.8785e-01, - 2DIAGNOSTIC, 16, -4.977027490052e-01, 1.677365691794e-04, 6.4911e+00, 1.8414e-01, - 2DIAGNOSTIC, 17, -4.977014314031e-01, 1.060383624301e-04, 6.6516e+00, 1.6053e-01, - 2DIAGNOSTIC, 18, -4.977001314728e-01, 4.585543165404e-05, 6.7938e+00, 1.4219e-01, - 2DIAGNOSTIC, 19, -4.976989825828e-01, 1.176297645689e-05, 6.9216e+00, 1.2771e-01, - 2DIAGNOSTIC, 20, -4.976980629576e-01, 2.333354409668e-06, 7.0490e+00, 1.2740e-01, - 2DIAGNOSTIC, 21, -4.977051148956e-01, 1.289981407096e-06, 7.1791e+00, 1.3011e-01, - 2DIAGNOSTIC, 22, -4.977056480523e-01, 1.255880965716e-06, 7.3032e+00, 1.2410e-01, - 2DIAGNOSTIC, 23, -4.977033777407e-01, 1.286820409632e-06, 7.4475e+00, 1.4430e-01, - 2DIAGNOSTIC, 24, -4.977094118133e-01, 1.527036446923e-06, 7.5905e+00, 1.4302e-01, - 2DIAGNOSTIC, 25, -4.977083600299e-01, 1.713160339319e-06, 7.8534e+00, 2.6294e-01, - 2DIAGNOSTIC, 26, -4.977105305654e-01, 1.802107128641e-06, 8.0528e+00, 1.9933e-01, - 2DIAGNOSTIC, 27, -4.977103539250e-01, 1.798630624300e-06, 8.2370e+00, 1.8421e-01, - 2DIAGNOSTIC, 28, -4.977081125793e-01, 1.668104930949e-06, 8.4073e+00, 1.7038e-01, - 2DIAGNOSTIC, 29, -4.977109421446e-01, 1.532238343420e-06, 8.5409e+00, 1.3359e-01, - 2DIAGNOSTIC, 30, -4.977130293223e-01, 1.379932389460e-06, 8.7280e+00, 1.8706e-01, - 2DIAGNOSTIC, 31, -4.977091101410e-01, 1.264497202974e-06, 8.8655e+00, 1.3749e-01, - 2DIAGNOSTIC, 32, -4.977080375591e-01, 1.129720916135e-06, 9.0039e+00, 1.3842e-01, - Elapsed time (stage 0): 9.2520e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.465817777348e-01, 1.797693134862e+308, 3.7375e-01, 3.7375e-01, - 2DIAGNOSTIC, 2, -8.490704953426e-01, 1.797693134862e+308, 3.7655e-01, 2.7978e-03, - 2DIAGNOSTIC, 3, -8.517823335985e-01, 1.797693134862e+308, 3.7793e-01, 1.3881e-03, - 2DIAGNOSTIC, 4, -8.536256431217e-01, 1.797693134862e+308, 3.7939e-01, 1.4529e-03, - 2DIAGNOSTIC, 5, -8.581564983427e-01, 1.797693134862e+308, 3.8053e-01, 1.1420e-03, - 2DIAGNOSTIC, 6, -8.663221543766e-01, 1.797693134862e+308, 3.8178e-01, 1.2560e-03, - 2DIAGNOSTIC, 7, -8.800159554925e-01, 1.797693134862e+308, 3.9090e-01, 9.1190e-03, - 2DIAGNOSTIC, 8, -8.951891485675e-01, 1.797693134862e+308, 3.9381e-01, 2.9109e-03, - 2DIAGNOSTIC, 9, -9.077676316639e-01, 1.797693134862e+308, 4.0055e-01, 6.7379e-03, - 2DIAGNOSTIC, 10, -9.087871860055e-01, 5.142364398163e-03, 4.0508e-01, 4.5280e-03, - 2DIAGNOSTIC, 11, -9.088809036797e-01, 4.938732161103e-03, 4.0934e-01, 4.2579e-03, - 2DIAGNOSTIC, 12, -9.093255026454e-01, 4.405727730540e-03, 4.1361e-01, 4.2679e-03, - 2DIAGNOSTIC, 13, -9.107930996502e-01, 3.658944274831e-03, 4.1744e-01, 3.8369e-03, - 2DIAGNOSTIC, 14, -9.122850220050e-01, 2.764654835789e-03, 4.2084e-01, 3.4008e-03, - 2DIAGNOSTIC, 15, -9.145345173915e-01, 1.888635383065e-03, 4.2549e-01, 4.6451e-03, - 2DIAGNOSTIC, 16, -9.169654833054e-01, 1.164311629670e-03, 4.2760e-01, 2.1071e-03, - 2DIAGNOSTIC, 17, -9.186867225835e-01, 7.054413000239e-04, 4.2961e-01, 2.0139e-03, - 2DIAGNOSTIC, 18, -9.230052138146e-01, 5.733648052613e-04, 4.3687e-01, 7.2551e-03, - 2DIAGNOSTIC, 19, -9.249834873729e-01, 6.446783834764e-04, 4.4203e-01, 5.1599e-03, - 2DIAGNOSTIC, 20, -9.257930607552e-01, 6.779765205851e-04, 4.4703e-01, 5.0042e-03, - 2DIAGNOSTIC, 21, -9.274136593125e-01, 6.716141144121e-04, 4.5428e-01, 7.2460e-03, - 2DIAGNOSTIC, 22, -9.274145803861e-01, 6.091382718538e-04, 4.6297e-01, 8.6970e-03, - 2DIAGNOSTIC, 23, -9.277134643006e-01, 5.193743556150e-04, 4.7285e-01, 9.8801e-03, - 2DIAGNOSTIC, 24, -9.293995394287e-01, 4.300808609658e-04, 4.9435e-01, 2.1502e-02, - 2DIAGNOSTIC, 25, -9.290883388230e-01, 3.317794662430e-04, 4.9820e-01, 3.8488e-03, - 2DIAGNOSTIC, 26, -9.293400816055e-01, 2.431986135399e-04, 5.0151e-01, 3.3019e-03, - 2DIAGNOSTIC, 27, -9.296029969890e-01, 1.608300451596e-04, 5.0704e-01, 5.5380e-03, - 2DIAGNOSTIC, 28, -9.290263251138e-01, 1.110227928649e-04, 5.1013e-01, 3.0909e-03, - 2DIAGNOSTIC, 29, -9.285422593881e-01, 7.047272732268e-05, 5.1327e-01, 3.1400e-03, - 2DIAGNOSTIC, 30, -9.282252687942e-01, 3.095701332697e-05, 5.1752e-01, 4.2439e-03, - 2DIAGNOSTIC, 31, -9.282875685110e-01, 8.461279946512e-06, 5.2414e-01, 6.6199e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.981688765113e-01, 1.797693134862e+308, 8.7748e-01, 3.5334e-01, - 2DIAGNOSTIC, 2, -7.967845441314e-01, 1.797693134862e+308, 8.8469e-01, 7.2131e-03, - 2DIAGNOSTIC, 3, -7.977846222216e-01, 1.797693134862e+308, 8.9577e-01, 1.1077e-02, - 2DIAGNOSTIC, 4, -7.989616795332e-01, 1.797693134862e+308, 9.0596e-01, 1.0197e-02, - 2DIAGNOSTIC, 5, -7.995607627976e-01, 1.797693134862e+308, 9.1113e-01, 5.1680e-03, - 2DIAGNOSTIC, 6, -7.996749956507e-01, 1.797693134862e+308, 9.2788e-01, 1.6753e-02, - 2DIAGNOSTIC, 7, -7.997295141753e-01, 1.797693134862e+308, 9.3325e-01, 5.3720e-03, - 2DIAGNOSTIC, 8, -8.004285218878e-01, 1.797693134862e+308, 9.3826e-01, 5.0070e-03, - 2DIAGNOSTIC, 9, -8.011976578940e-01, 1.797693134862e+308, 9.4328e-01, 5.0149e-03, - 2DIAGNOSTIC, 10, -8.013212242280e-01, 3.317534590215e-04, 9.5138e-01, 8.1048e-03, - 2DIAGNOSTIC, 11, -8.014156719865e-01, 3.165008579530e-04, 9.6069e-01, 9.3040e-03, - 2DIAGNOSTIC, 12, -8.010053281105e-01, 2.226185231725e-04, 9.6507e-01, 4.3809e-03, - 2DIAGNOSTIC, 13, -8.011009136817e-01, 1.526184690026e-04, 9.7811e-01, 1.3043e-02, - 2DIAGNOSTIC, 14, -8.011185773337e-01, 1.083756553927e-04, 9.9388e-01, 1.5767e-02, - 2DIAGNOSTIC, 15, -8.009485929642e-01, 7.045832177037e-05, 9.9955e-01, 5.6751e-03, - 2DIAGNOSTIC, 16, -8.006043879841e-01, 2.648198662705e-05, 1.0129e+00, 1.3320e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.756717518240e-01, 1.797693134862e+308, 1.3582e+00, 3.4530e-01, - 2DIAGNOSTIC, 2, -6.769221273737e-01, 1.797693134862e+308, 1.3865e+00, 2.8378e-02, - 2DIAGNOSTIC, 3, -6.777840098702e-01, 1.797693134862e+308, 1.4286e+00, 4.2027e-02, - 2DIAGNOSTIC, 4, -6.783955743427e-01, 1.797693134862e+308, 1.4734e+00, 4.4782e-02, - 2DIAGNOSTIC, 5, -6.789456163727e-01, 1.797693134862e+308, 1.4958e+00, 2.2484e-02, - 2DIAGNOSTIC, 6, -6.795787239428e-01, 1.797693134862e+308, 1.5379e+00, 4.2077e-02, - 2DIAGNOSTIC, 7, -6.810254361453e-01, 1.797693134862e+308, 1.5776e+00, 3.9685e-02, - 2DIAGNOSTIC, 8, -6.812187558429e-01, 1.797693134862e+308, 1.6537e+00, 7.6093e-02, - 2DIAGNOSTIC, 9, -6.812110175082e-01, 1.797693134862e+308, 1.7131e+00, 5.9428e-02, - 2DIAGNOSTIC, 10, -6.812915425705e-01, 5.517838183483e-04, 1.7485e+00, 3.5371e-02, - 2DIAGNOSTIC, 11, -6.813113353959e-01, 4.109704190064e-04, 1.7968e+00, 4.8338e-02, - 2DIAGNOSTIC, 12, -6.812937077517e-01, 2.988301213467e-04, 1.8526e+00, 5.5740e-02, - 2DIAGNOSTIC, 13, -6.813362485388e-01, 2.061049472587e-04, 1.8859e+00, 3.3359e-02, - 2DIAGNOSTIC, 14, -6.813710873687e-01, 1.278660920222e-04, 1.9314e+00, 4.5483e-02, - 2DIAGNOSTIC, 15, -6.814273819773e-01, 6.552154575901e-05, 1.9864e+00, 5.5020e-02, - 2DIAGNOSTIC, 16, -6.814833202231e-01, 2.211831453287e-05, 2.0149e+00, 2.8415e-02, - 2DIAGNOSTIC, 17, -6.816506184947e-01, 2.154070347511e-05, 2.0506e+00, 3.5709e-02, - 2DIAGNOSTIC, 18, -6.820640245568e-01, 3.323622770156e-05, 2.0976e+00, 4.7086e-02, - 2DIAGNOSTIC, 19, -6.826539287355e-01, 5.331092813384e-05, 2.1662e+00, 6.8551e-02, - 2DIAGNOSTIC, 20, -6.828175265968e-01, 7.145162628872e-05, 2.1991e+00, 3.2926e-02, - 2DIAGNOSTIC, 21, -6.828657155673e-01, 8.288221645739e-05, 2.2328e+00, 3.3635e-02, - 2DIAGNOSTIC, 22, -6.829740973172e-01, 8.750526290497e-05, 2.2817e+00, 4.8926e-02, - 2DIAGNOSTIC, 23, -6.829672423768e-01, 8.415758276714e-05, 2.3132e+00, 3.1504e-02, - 2DIAGNOSTIC, 24, -6.829656272231e-01, 7.376985912510e-05, 2.3534e+00, 4.0178e-02, - 2DIAGNOSTIC, 25, -6.829578613013e-01, 5.828649596550e-05, 2.3885e+00, 3.5180e-02, - 2DIAGNOSTIC, 26, -6.829729864224e-01, 3.990609346367e-05, 2.4161e+00, 2.7590e-02, - 2DIAGNOSTIC, 27, -6.830918368516e-01, 2.359881328472e-05, 2.4626e+00, 4.6491e-02, - 2DIAGNOSTIC, 28, -6.832218793420e-01, 1.417799424661e-05, 2.4918e+00, 2.9207e-02, - 2DIAGNOSTIC, 29, -6.832749511420e-01, 1.336507007140e-05, 2.5495e+00, 5.7663e-02, - 2DIAGNOSTIC, 30, -6.832927512744e-01, 1.399525462091e-05, 2.6784e+00, 1.2891e-01, - 2DIAGNOSTIC, 31, -6.832927512715e-01, 1.398693241693e-05, 2.8444e+00, 1.6604e-01, - 2DIAGNOSTIC, 32, -6.832927512715e-01, 1.414539810386e-05, 2.8859e+00, 4.1434e-02, - 2DIAGNOSTIC, 33, -6.832927512715e-01, 1.293083975284e-05, 2.9141e+00, 2.8198e-02, - 2DIAGNOSTIC, 34, -6.832927512715e-01, 1.064325333617e-05, 2.9555e+00, 4.1400e-02, - 2DIAGNOSTIC, 35, -6.832927512715e-01, 7.503275687947e-06, 2.9897e+00, 3.4212e-02, - 2DIAGNOSTIC, 36, -6.832927512715e-01, 4.074403815339e-06, 3.0206e+00, 3.0940e-02, - 2DIAGNOSTIC, 37, -6.832927512715e-01, 1.835504121226e-06, 3.0620e+00, 4.1411e-02, - 2DIAGNOSTIC, 38, -6.832927512715e-01, 1.034280844071e-06, 3.1143e+00, 5.2245e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.696954542705e-01, 1.797693134862e+308, 3.9402e+00, 8.2590e-01, - 2DIAGNOSTIC, 2, -5.704943967627e-01, 1.797693134862e+308, 4.1035e+00, 1.6334e-01, - 2DIAGNOSTIC, 3, -5.710715379090e-01, 1.797693134862e+308, 4.2691e+00, 1.6553e-01, - 2DIAGNOSTIC, 4, -5.715214897131e-01, 1.797693134862e+308, 4.4336e+00, 1.6451e-01, - 2DIAGNOSTIC, 5, -5.719508720138e-01, 1.797693134862e+308, 4.6004e+00, 1.6685e-01, - 2DIAGNOSTIC, 6, -5.727575591114e-01, 1.797693134862e+308, 4.9975e+00, 3.9705e-01, - 2DIAGNOSTIC, 7, -5.728521335276e-01, 1.797693134862e+308, 5.2388e+00, 2.4134e-01, - 2DIAGNOSTIC, 8, -5.729257383516e-01, 1.797693134862e+308, 5.4377e+00, 1.9893e-01, - 2DIAGNOSTIC, 9, -5.730165177561e-01, 1.797693134862e+308, 5.6088e+00, 1.7108e-01, - 2DIAGNOSTIC, 10, -5.730863154306e-01, 3.833577278583e-04, 5.7723e+00, 1.6353e-01, - 2DIAGNOSTIC, 11, -5.731709331742e-01, 2.719508904198e-04, 5.9065e+00, 1.3415e-01, - 2DIAGNOSTIC, 12, -5.732197162090e-01, 1.897375228119e-04, 6.1148e+00, 2.0832e-01, - 2DIAGNOSTIC, 13, -5.732335191253e-01, 1.260444618150e-04, 6.2727e+00, 1.5790e-01, - 2DIAGNOSTIC, 14, -5.732528470290e-01, 7.683218105189e-05, 6.4233e+00, 1.5057e-01, - 2DIAGNOSTIC, 15, -5.732832118366e-01, 4.186925647356e-05, 6.6405e+00, 2.1719e-01, - 2DIAGNOSTIC, 16, -5.732893153465e-01, 3.277930866225e-05, 6.8615e+00, 2.2106e-01, - 2DIAGNOSTIC, 17, -5.733045124836e-01, 2.511527835131e-05, 7.0687e+00, 2.0714e-01, - 2DIAGNOSTIC, 18, -5.733191980949e-01, 1.857163713941e-05, 7.2325e+00, 1.6379e-01, - 2DIAGNOSTIC, 19, -5.733246188746e-01, 1.365276212608e-05, 7.4212e+00, 1.8869e-01, - 2DIAGNOSTIC, 20, -5.733564774803e-01, 1.058790744942e-05, 7.5899e+00, 1.6872e-01, - 2DIAGNOSTIC, 21, -5.733946539566e-01, 9.836925203115e-06, 7.7497e+00, 1.5986e-01, - 2DIAGNOSTIC, 22, -5.735014611478e-01, 1.187311491876e-05, 7.9192e+00, 1.6943e-01, - 2DIAGNOSTIC, 23, -5.735176890654e-01, 1.335085169764e-05, 8.1281e+00, 2.0892e-01, - 2DIAGNOSTIC, 24, -5.735349309984e-01, 1.435272516828e-05, 8.2921e+00, 1.6401e-01, - 2DIAGNOSTIC, 25, -5.735489214287e-01, 1.495123318370e-05, 8.4870e+00, 1.9488e-01, - 2DIAGNOSTIC, 26, -5.735707210204e-01, 1.472564185934e-05, 8.6837e+00, 1.9671e-01, - 2DIAGNOSTIC, 27, -5.737116318688e-01, 1.607645844380e-05, 8.9385e+00, 2.5480e-01, - 2DIAGNOSTIC, 28, -5.737340382939e-01, 1.652206402243e-05, 9.1469e+00, 2.0841e-01, - 2DIAGNOSTIC, 29, -5.737612811988e-01, 1.608201025016e-05, 9.3143e+00, 1.6745e-01, - 2DIAGNOSTIC, 30, -5.737692334959e-01, 1.494370116530e-05, 9.4992e+00, 1.8481e-01, - 2DIAGNOSTIC, 31, -5.738013161994e-01, 1.363996500148e-05, 9.6315e+00, 1.3233e-01, - 2DIAGNOSTIC, 32, -5.738819745459e-01, 1.408269129955e-05, 9.7584e+00, 1.2693e-01, - 2DIAGNOSTIC, 33, -5.740863866412e-01, 1.653149253818e-05, 9.9803e+00, 2.2188e-01, - 2DIAGNOSTIC, 34, -5.741504333656e-01, 1.850357111142e-05, 1.0161e+01, 1.8092e-01, - 2DIAGNOSTIC, 35, -5.741686893602e-01, 1.919344238338e-05, 1.0391e+01, 2.2980e-01, - 2DIAGNOSTIC, 36, -5.742059902820e-01, 1.891182884135e-05, 1.0623e+01, 2.3176e-01, - 2DIAGNOSTIC, 37, -5.743053199096e-01, 2.011946772342e-05, 1.0816e+01, 1.9280e-01, - 2DIAGNOSTIC, 38, -5.744648975114e-01, 2.172220126074e-05, 1.1066e+01, 2.5010e-01, - 2DIAGNOSTIC, 39, -5.745576450699e-01, 2.273693438756e-05, 1.1254e+01, 1.8853e-01, - 2DIAGNOSTIC, 40, -5.745730768873e-01, 2.194472804581e-05, 1.1479e+01, 2.2433e-01, - 2DIAGNOSTIC, 41, -5.745751979499e-01, 1.962794005347e-05, 1.1632e+01, 1.5381e-01, - 2DIAGNOSTIC, 42, -5.745699676593e-01, 1.644637127916e-05, 1.1798e+01, 1.6590e-01, - 2DIAGNOSTIC, 43, -5.745701652630e-01, 1.422705887071e-05, 1.1991e+01, 1.9282e-01, - 2DIAGNOSTIC, 44, -5.745667665093e-01, 1.149499410296e-05, 1.2204e+01, 2.1244e-01, - 2DIAGNOSTIC, 45, -5.745652962588e-01, 8.062864988227e-06, 1.2403e+01, 1.9924e-01, - 2DIAGNOSTIC, 46, -5.745748700696e-01, 4.587174865289e-06, 1.2598e+01, 1.9515e-01, - 2DIAGNOSTIC, 47, -5.745863559143e-01, 2.018776214398e-06, 1.2804e+01, 2.0658e-01, - 2DIAGNOSTIC, 48, -5.745960468982e-01, 1.149529918650e-06, 1.2968e+01, 1.6337e-01, - 2DIAGNOSTIC, 49, -5.746639033852e-01, 1.889295766354e-06, 1.3183e+01, 2.1529e-01, - 2DIAGNOSTIC, 50, -5.746720961301e-01, 2.697399973207e-06, 1.3348e+01, 1.6472e-01, - 2DIAGNOSTIC, 51, -5.746671454419e-01, 3.254929205887e-06, 1.3523e+01, 1.7504e-01, - 2DIAGNOSTIC, 52, -5.746638222602e-01, 3.466790112969e-06, 1.3713e+01, 1.8997e-01, - 2DIAGNOSTIC, 53, -5.746620390247e-01, 3.381403419996e-06, 1.3937e+01, 2.2434e-01, - 2DIAGNOSTIC, 54, -5.746656934520e-01, 3.026046952653e-06, 1.4205e+01, 2.6755e-01, - 2DIAGNOSTIC, 55, -5.746638613596e-01, 2.415160540097e-06, 1.4550e+01, 3.4573e-01, - 2DIAGNOSTIC, 56, -5.746638613733e-01, 1.743563291971e-06, 1.4868e+01, 3.1728e-01, - 2DIAGNOSTIC, 57, -5.746638613733e-01, 1.089427314121e-06, 1.5158e+01, 2.8994e-01, - Elapsed time (stage 1): 1.5368e+01 - - -Total elapsed time: 2.4628e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:14:53 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:14:54 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55cc7b4434f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.0727, -117.336] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cc7b448fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f477104f010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55cc7b444850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.0727, -117.336] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cc7b441f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f476d990010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55cc7b45bb80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.0727, -117.336] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cc7b448550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f476a2d1010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55cc7b460d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.0727, -117.336] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cc7b45ec00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4766c12010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55cc7b462f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.0727, -117.336] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cc7b4613a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4763553010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55cc7b463540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.0727, -117.336] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cc7b4634d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f475fe94010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.361285841305e-01, 1.797693134862e+308, 3.0362e-01, 3.0362e-01, - 2DIAGNOSTIC, 2, -6.395513070805e-01, 1.797693134862e+308, 3.0926e-01, 5.6438e-03, - 2DIAGNOSTIC, 3, -6.440822583447e-01, 1.797693134862e+308, 3.1464e-01, 5.3849e-03, - 2DIAGNOSTIC, 4, -6.491946027266e-01, 1.797693134862e+308, 3.2007e-01, 5.4281e-03, - 2DIAGNOSTIC, 5, -6.538520510997e-01, 1.797693134862e+308, 3.2591e-01, 5.8360e-03, - 2DIAGNOSTIC, 6, -6.569821564471e-01, 1.797693134862e+308, 3.3135e-01, 5.4400e-03, - 2DIAGNOSTIC, 7, -6.587607979342e-01, 1.797693134862e+308, 3.3894e-01, 7.5920e-03, - 2DIAGNOSTIC, 8, -6.592645348464e-01, 1.797693134862e+308, 3.4805e-01, 9.1062e-03, - 2DIAGNOSTIC, 9, -6.598738752165e-01, 1.797693134862e+308, 3.5803e-01, 9.9812e-03, - 2DIAGNOSTIC, 10, -6.602632147553e-01, 2.511795516714e-03, 3.6547e-01, 7.4370e-03, - 2DIAGNOSTIC, 11, -6.602938695685e-01, 1.792405748078e-03, 3.7337e-01, 7.9019e-03, - 2DIAGNOSTIC, 12, -6.604856492452e-01, 1.164139586064e-03, 3.8064e-01, 7.2691e-03, - 2DIAGNOSTIC, 13, -6.612735563844e-01, 7.046732789067e-04, 3.8694e-01, 6.3062e-03, - 2DIAGNOSTIC, 14, -6.612922379446e-01, 4.038797777555e-04, 3.9351e-01, 6.5660e-03, - 2DIAGNOSTIC, 15, -6.613034554820e-01, 2.403860686533e-04, 4.0171e-01, 8.2059e-03, - 2DIAGNOSTIC, 16, -6.613238680980e-01, 1.604152370837e-04, 4.0897e-01, 7.2570e-03, - 2DIAGNOSTIC, 17, -6.614746981230e-01, 1.243763703120e-04, 4.1298e-01, 4.0078e-03, - 2DIAGNOSTIC, 18, -6.614754567517e-01, 9.248158229251e-05, 4.1683e-01, 3.8540e-03, - 2DIAGNOSTIC, 19, -6.614762249305e-01, 6.927500110941e-05, 4.2014e-01, 3.3078e-03, - 2DIAGNOSTIC, 20, -6.614769457329e-01, 5.092685669844e-05, 4.3394e-01, 1.3799e-02, - 2DIAGNOSTIC, 21, -6.614778024969e-01, 3.046397886184e-05, 4.5123e-01, 1.7291e-02, - 2DIAGNOSTIC, 22, -6.614789941379e-01, 1.247988103239e-05, 4.5787e-01, 6.6371e-03, - 2DIAGNOSTIC, 23, -6.614793070818e-01, 9.848147019452e-06, 4.6319e-01, 5.3198e-03, - 2DIAGNOSTIC, 24, -6.614793895100e-01, 7.025689665784e-06, 4.8645e-01, 2.3262e-02, - 2DIAGNOSTIC, 25, -6.614796589821e-01, 4.116251183926e-06, 4.9244e-01, 5.9869e-03, - 2DIAGNOSTIC, 26, -6.614807320776e-01, 1.450435896985e-06, 4.9664e-01, 4.2050e-03, - 2DIAGNOSTIC, 27, -6.614823873027e-01, 1.401844930804e-06, 5.0168e-01, 5.0371e-03, - 2DIAGNOSTIC, 28, -6.614824358913e-01, 1.348117435081e-06, 5.1243e-01, 1.0750e-02, - 2DIAGNOSTIC, 29, -6.614824430232e-01, 1.290838987505e-06, 5.2743e-01, 1.5000e-02, - 2DIAGNOSTIC, 30, -6.614824657151e-01, 1.230500079212e-06, 5.3279e-01, 5.3611e-03, - 2DIAGNOSTIC, 31, -6.614825836840e-01, 1.171296051823e-06, 5.3657e-01, 3.7839e-03, - 2DIAGNOSTIC, 32, -6.614830059878e-01, 1.123781932233e-06, 5.4042e-01, 3.8431e-03, - 2DIAGNOSTIC, 33, -6.614837170319e-01, 1.080711530509e-06, 5.4362e-01, 3.2029e-03, - 2DIAGNOSTIC, 34, -6.614871592583e-01, 1.074493903380e-06, 5.5707e-01, 1.3455e-02, - 2DIAGNOSTIC, 35, -6.614871592309e-01, 1.057997037947e-06, 5.7053e-01, 1.3455e-02, - 2DIAGNOSTIC, 36, -6.614871592309e-01, 1.041506294496e-06, 5.7811e-01, 7.5850e-03, - 2DIAGNOSTIC, 37, -6.614871592309e-01, 1.031063010856e-06, 5.8334e-01, 5.2240e-03, - 2DIAGNOSTIC, 38, -6.614871592309e-01, 1.005463791559e-06, 5.8911e-01, 5.7678e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.508715492149e-01, 1.797693134862e+308, 1.0524e+00, 4.6327e-01, - 2DIAGNOSTIC, 2, -5.514007383092e-01, 1.797693134862e+308, 1.0673e+00, 1.4958e-02, - 2DIAGNOSTIC, 3, -5.518022997713e-01, 1.797693134862e+308, 1.1033e+00, 3.5922e-02, - 2DIAGNOSTIC, 4, -5.520869453597e-01, 1.797693134862e+308, 1.1520e+00, 4.8771e-02, - 2DIAGNOSTIC, 5, -5.522385973703e-01, 1.797693134862e+308, 1.2077e+00, 5.5632e-02, - 2DIAGNOSTIC, 6, -5.522674893571e-01, 1.797693134862e+308, 1.2274e+00, 1.9782e-02, - 2DIAGNOSTIC, 7, -5.522770932345e-01, 1.797693134862e+308, 1.2763e+00, 4.8834e-02, - 2DIAGNOSTIC, 8, -5.522724001411e-01, 1.797693134862e+308, 1.3013e+00, 2.5042e-02, - 2DIAGNOSTIC, 9, -5.522425675006e-01, 1.797693134862e+308, 1.3421e+00, 4.0792e-02, - 2DIAGNOSTIC, 10, -5.522436029767e-01, 1.335074563416e-04, 1.3796e+00, 3.7537e-02, - 2DIAGNOSTIC, 11, -5.522127834046e-01, 6.487475990719e-05, 1.4102e+00, 3.0503e-02, - 2DIAGNOSTIC, 12, -5.522061854133e-01, 2.431557158367e-05, 1.4564e+00, 4.6210e-02, - 2DIAGNOSTIC, 13, -5.522042522707e-01, 3.636522371397e-06, 1.4813e+00, 2.4962e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.581250430700e-01, 1.797693134862e+308, 2.1083e+00, 6.2702e-01, - 2DIAGNOSTIC, 2, -4.584832900306e-01, 1.797693134862e+308, 2.3712e+00, 2.6290e-01, - 2DIAGNOSTIC, 3, -4.586078901450e-01, 1.797693134862e+308, 2.5614e+00, 1.9014e-01, - 2DIAGNOSTIC, 4, -4.586227144258e-01, 1.797693134862e+308, 2.7544e+00, 1.9296e-01, - 2DIAGNOSTIC, 5, -4.587445723475e-01, 1.797693134862e+308, 2.9112e+00, 1.5689e-01, - 2DIAGNOSTIC, 6, -4.588271072861e-01, 1.797693134862e+308, 3.1668e+00, 2.5552e-01, - 2DIAGNOSTIC, 7, -4.588367771350e-01, 1.797693134862e+308, 3.3211e+00, 1.5433e-01, - 2DIAGNOSTIC, 8, -4.588472162368e-01, 1.797693134862e+308, 3.4776e+00, 1.5653e-01, - 2DIAGNOSTIC, 9, -4.588481350300e-01, 1.797693134862e+308, 3.6804e+00, 2.0274e-01, - 2DIAGNOSTIC, 10, -4.588477330161e-01, 8.515904188305e-05, 3.8850e+00, 2.0463e-01, - 2DIAGNOSTIC, 11, -4.588480096325e-01, 4.694324978001e-05, 4.1628e+00, 2.7776e-01, - 2DIAGNOSTIC, 12, -4.588459098158e-01, 2.943885212503e-05, 4.3652e+00, 2.0240e-01, - 2DIAGNOSTIC, 13, -4.588462383354e-01, 1.827001117738e-05, 4.5578e+00, 1.9264e-01, - 2DIAGNOSTIC, 14, -4.588447951012e-01, 7.744879337857e-06, 4.7211e+00, 1.6334e-01, - 2DIAGNOSTIC, 15, -4.588451832398e-01, 3.087688701858e-06, 4.8980e+00, 1.7684e-01, - 2DIAGNOSTIC, 16, -4.588427185731e-01, 2.018597823283e-06, 5.0594e+00, 1.6144e-01, - 2DIAGNOSTIC, 17, -4.588431866012e-01, 1.434343280857e-06, 5.2139e+00, 1.5444e-01, - 2DIAGNOSTIC, 18, -4.588444055610e-01, 1.354742665341e-06, 5.3830e+00, 1.6912e-01, - 2DIAGNOSTIC, 19, -4.588421267478e-01, 1.275246682794e-06, 5.5677e+00, 1.8466e-01, - 2DIAGNOSTIC, 20, -4.588427386649e-01, 1.249403105794e-06, 5.7968e+00, 2.2915e-01, - 2DIAGNOSTIC, 21, -4.588428278027e-01, 1.270202664466e-06, 5.9888e+00, 1.9199e-01, - 2DIAGNOSTIC, 22, -4.588419337146e-01, 1.226085424938e-06, 6.2615e+00, 2.7267e-01, - 2DIAGNOSTIC, 23, -4.588436742803e-01, 1.262896360765e-06, 6.4418e+00, 1.8032e-01, - 2DIAGNOSTIC, 24, -4.588398981421e-01, 1.171632728648e-06, 6.6151e+00, 1.7335e-01, - 2DIAGNOSTIC, 25, -4.588412377427e-01, 1.150107667637e-06, 6.8103e+00, 1.9517e-01, - 2DIAGNOSTIC, 26, -4.588407741712e-01, 1.069801382023e-06, 6.9596e+00, 1.4935e-01, - 2DIAGNOSTIC, 27, -4.588404720346e-01, 1.011985931144e-06, 7.1190e+00, 1.5939e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.964649561989e-01, 1.797693134862e+308, 1.0106e+01, 2.9868e+00, - 2DIAGNOSTIC, 2, -3.964647017938e-01, 1.797693134862e+308, 1.1245e+01, 1.1393e+00, - 2DIAGNOSTIC, 3, -3.964642646474e-01, 1.797693134862e+308, 1.2720e+01, 1.4754e+00, - 2DIAGNOSTIC, 4, -3.964644335984e-01, 1.797693134862e+308, 1.3781e+01, 1.0605e+00, - 2DIAGNOSTIC, 5, -3.964643199762e-01, 1.797693134862e+308, 1.4801e+01, 1.0201e+00, - 2DIAGNOSTIC, 6, -3.964640056248e-01, 1.797693134862e+308, 1.5731e+01, 9.2956e-01, - 2DIAGNOSTIC, 7, -3.964640467844e-01, 1.797693134862e+308, 1.6880e+01, 1.1498e+00, - 2DIAGNOSTIC, 8, -3.964641288819e-01, 1.797693134862e+308, 1.7687e+01, 8.0647e-01, - 2DIAGNOSTIC, 9, -3.964638454153e-01, 1.797693134862e+308, 1.8791e+01, 1.1038e+00, - 2DIAGNOSTIC, 10, -3.964639354613e-01, 3.030692062131e-06, 1.9664e+01, 8.7307e-01, - 2DIAGNOSTIC, 11, -3.964638062183e-01, 2.782418003083e-06, 2.0759e+01, 1.0954e+00, - 2DIAGNOSTIC, 12, -3.964639870158e-01, 2.581713759886e-06, 2.1837e+01, 1.0783e+00, - 2DIAGNOSTIC, 13, -3.964640855077e-01, 2.398510919335e-06, 2.2862e+01, 1.0244e+00, - 2DIAGNOSTIC, 14, -3.964637500339e-01, 2.237428760238e-06, 2.3926e+01, 1.0643e+00, - 2DIAGNOSTIC, 15, -3.964636730118e-01, 2.093058115063e-06, 2.4896e+01, 9.6986e-01, - 2DIAGNOSTIC, 16, -3.964635955748e-01, 1.951537256947e-06, 2.5907e+01, 1.0109e+00, - 2DIAGNOSTIC, 17, -3.964635609912e-01, 1.829829436681e-06, 2.6873e+01, 9.6607e-01, - 2DIAGNOSTIC, 18, -3.964634307189e-01, 1.723737866728e-06, 2.7960e+01, 1.0877e+00, - 2DIAGNOSTIC, 19, -3.964633876842e-01, 1.620766745064e-06, 2.9036e+01, 1.0752e+00, - 2DIAGNOSTIC, 20, -3.964631692454e-01, 1.528795239354e-06, 3.0037e+01, 1.0009e+00, - 2DIAGNOSTIC, 21, -3.964629773333e-01, 1.440226536531e-06, 3.1041e+01, 1.0048e+00, - 2DIAGNOSTIC, 22, -3.964631280831e-01, 1.377321287639e-06, 3.2127e+01, 1.0861e+00, - 2DIAGNOSTIC, 23, -3.964633086586e-01, 1.334992195928e-06, 3.3137e+01, 1.0092e+00, - 2DIAGNOSTIC, 24, -3.964635237488e-01, 1.296986920495e-06, 3.4242e+01, 1.1057e+00, - 2DIAGNOSTIC, 25, -3.964634311473e-01, 1.259905725505e-06, 3.5182e+01, 9.3959e-01, - 2DIAGNOSTIC, 26, -3.964633153643e-01, 1.221810863858e-06, 3.6287e+01, 1.1054e+00, - 2DIAGNOSTIC, 27, -3.964634611637e-01, 1.189721370823e-06, 3.7286e+01, 9.9860e-01, - 2DIAGNOSTIC, 28, -3.964632739138e-01, 1.150292646419e-06, 3.8292e+01, 1.0061e+00, - 2DIAGNOSTIC, 29, -3.964634085267e-01, 1.114693029873e-06, 3.9177e+01, 8.8488e-01, - 2DIAGNOSTIC, 30, -3.964634283015e-01, 1.075221102154e-06, 4.0104e+01, 9.2697e-01, - 2DIAGNOSTIC, 31, -3.964634170221e-01, 1.032213261344e-06, 4.1087e+01, 9.8278e-01, - 2DIAGNOSTIC, 32, -3.964639440138e-01, 1.006439210388e-06, 4.2089e+01, 1.0024e+00, - Elapsed time (stage 0): 4.2700e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.578297484316e-01, 1.797693134862e+308, 3.6858e-01, 3.6858e-01, - 2DIAGNOSTIC, 2, -6.598893449728e-01, 1.797693134862e+308, 3.7061e-01, 2.0289e-03, - 2DIAGNOSTIC, 3, -6.617771989803e-01, 1.797693134862e+308, 3.7703e-01, 6.4201e-03, - 2DIAGNOSTIC, 4, -6.632632957062e-01, 1.797693134862e+308, 3.8185e-01, 4.8220e-03, - 2DIAGNOSTIC, 5, -6.638911463741e-01, 1.797693134862e+308, 3.8846e-01, 6.6102e-03, - 2DIAGNOSTIC, 6, -6.643190111796e-01, 1.797693134862e+308, 3.9274e-01, 4.2810e-03, - 2DIAGNOSTIC, 7, -6.644545592071e-01, 1.797693134862e+308, 3.9956e-01, 6.8219e-03, - 2DIAGNOSTIC, 8, -6.645695403953e-01, 1.797693134862e+308, 4.1262e-01, 1.3054e-02, - 2DIAGNOSTIC, 9, -6.644692371937e-01, 1.797693134862e+308, 4.4015e-01, 2.7535e-02, - 2DIAGNOSTIC, 10, -6.645434325631e-01, 5.734935990244e-04, 4.5137e-01, 1.1217e-02, - 2DIAGNOSTIC, 11, -6.645904501961e-01, 3.264556855379e-04, 4.5390e-01, 2.5280e-03, - 2DIAGNOSTIC, 12, -6.646377001669e-01, 1.657560080243e-04, 4.5747e-01, 3.5720e-03, - 2DIAGNOSTIC, 13, -6.646499643890e-01, 7.675373378058e-05, 4.6368e-01, 6.2089e-03, - 2DIAGNOSTIC, 14, -6.646583764057e-01, 3.921081881171e-05, 4.6883e-01, 5.1539e-03, - 2DIAGNOSTIC, 15, -6.646669482297e-01, 2.122480132789e-05, 4.7509e-01, 6.2611e-03, - 2DIAGNOSTIC, 16, -6.646745802975e-01, 1.525484746387e-05, 4.8328e-01, 8.1859e-03, - 2DIAGNOSTIC, 17, -6.646870202772e-01, 1.238739286631e-05, 4.9349e-01, 1.0211e-02, - 2DIAGNOSTIC, 18, -6.646871900309e-01, 1.170253190877e-05, 5.0216e-01, 8.6739e-03, - 2DIAGNOSTIC, 19, -6.646881292451e-01, 7.913454641781e-06, 5.1713e-01, 1.4971e-02, - 2DIAGNOSTIC, 20, -6.646906672759e-01, 5.554059500083e-06, 5.2459e-01, 7.4570e-03, - 2DIAGNOSTIC, 21, -6.647010160515e-01, 4.192961239685e-06, 5.4358e-01, 1.8987e-02, - 2DIAGNOSTIC, 22, -6.647411313791e-01, 4.394285608833e-06, 5.5511e-01, 1.1534e-02, - 2DIAGNOSTIC, 23, -6.647419638446e-01, 4.526673022053e-06, 5.7490e-01, 1.9791e-02, - 2DIAGNOSTIC, 24, -6.647420230130e-01, 4.516212867942e-06, 5.8442e-01, 9.5150e-03, - 2DIAGNOSTIC, 25, -6.647421420965e-01, 4.364678142695e-06, 5.9177e-01, 7.3509e-03, - 2DIAGNOSTIC, 26, -6.647424679209e-01, 4.054205240737e-06, 6.0078e-01, 9.0141e-03, - 2DIAGNOSTIC, 27, -6.647431505340e-01, 3.697539104890e-06, 6.0846e-01, 7.6811e-03, - 2DIAGNOSTIC, 28, -6.647438274339e-01, 3.141714559986e-06, 6.1457e-01, 6.1100e-03, - 2DIAGNOSTIC, 29, -6.647457438863e-01, 2.487373488014e-06, 6.2556e-01, 1.0989e-02, - 2DIAGNOSTIC, 30, -6.647463133137e-01, 1.791962244410e-06, 6.3543e-01, 9.8710e-03, - 2DIAGNOSTIC, 31, -6.648829301123e-01, 3.085431010776e-06, 6.4036e-01, 4.9219e-03, - 2DIAGNOSTIC, 32, -6.647487846301e-01, 2.793358468041e-06, 6.4428e-01, 3.9239e-03, - 2DIAGNOSTIC, 33, -6.647488275703e-01, 2.430774480588e-06, 6.4863e-01, 4.3490e-03, - 2DIAGNOSTIC, 34, -6.647490281073e-01, 1.960990486348e-06, 6.5556e-01, 6.9311e-03, - 2DIAGNOSTIC, 35, -6.647497020050e-01, 1.397241356570e-06, 6.6362e-01, 8.0578e-03, - 2DIAGNOSTIC, 36, -6.648890798793e-01, 2.457521634858e-06, 6.6956e-01, 5.9409e-03, - 2DIAGNOSTIC, 37, -6.649011983427e-01, 3.433154390907e-06, 6.7379e-01, 4.2331e-03, - 2DIAGNOSTIC, 38, -6.652548603004e-01, 8.147139536223e-06, 6.8095e-01, 7.1568e-03, - 2DIAGNOSTIC, 39, -6.652591797176e-01, 1.190025206037e-05, 6.9976e-01, 1.8807e-02, - 2DIAGNOSTIC, 40, -6.652617033918e-01, 1.442292042549e-05, 7.0524e-01, 5.4820e-03, - 2DIAGNOSTIC, 41, -6.652652625537e-01, 1.705977277140e-05, 7.0826e-01, 3.0260e-03, - 2DIAGNOSTIC, 42, -6.652684788713e-01, 1.666166675560e-05, 7.1345e-01, 5.1908e-03, - 2DIAGNOSTIC, 43, -6.652733990210e-01, 1.477472947590e-05, 7.3278e-01, 1.9331e-02, - 2DIAGNOSTIC, 44, -6.652747355928e-01, 1.165103560726e-05, 7.3733e-01, 4.5469e-03, - 2DIAGNOSTIC, 45, -6.652771799703e-01, 7.669170626973e-06, 7.4204e-01, 4.7069e-03, - 2DIAGNOSTIC, 46, -6.652823287660e-01, 4.575033625640e-06, 7.5024e-01, 8.2030e-03, - 2DIAGNOSTIC, 47, -6.652897712740e-01, 1.325931060166e-06, 7.6492e-01, 1.4680e-02, - 2DIAGNOSTIC, 48, -6.652910772641e-01, 1.311173328931e-06, 7.7637e-01, 1.1451e-02, - 2DIAGNOSTIC, 49, -6.652933295582e-01, 1.293276040346e-06, 7.8711e-01, 1.0735e-02, - 2DIAGNOSTIC, 50, -6.652980827691e-01, 1.276879391110e-06, 8.0477e-01, 1.7665e-02, - 2DIAGNOSTIC, 51, -6.652990883484e-01, 1.236173269224e-06, 8.2031e-01, 1.5539e-02, - 2DIAGNOSTIC, 52, -6.653020651800e-01, 1.187890404784e-06, 8.5808e-01, 3.7772e-02, - 2DIAGNOSTIC, 53, -6.653319996028e-01, 1.367616889996e-06, 8.6625e-01, 8.1642e-03, - 2DIAGNOSTIC, 54, -6.653370892895e-01, 1.512013368326e-06, 8.7143e-01, 5.1792e-03, - 2DIAGNOSTIC, 55, -6.654719470702e-01, 2.631171408883e-06, 8.7720e-01, 5.7778e-03, - 2DIAGNOSTIC, 56, -6.653400396478e-01, 2.518395235202e-06, 8.9393e-01, 1.6728e-02, - 2DIAGNOSTIC, 57, -6.653403697348e-01, 2.320892671836e-06, 9.0395e-01, 1.0020e-02, - 2DIAGNOSTIC, 58, -6.654798015858e-01, 2.998948128319e-06, 9.0639e-01, 2.4369e-03, - 2DIAGNOSTIC, 59, -6.654811809683e-01, 3.394623149945e-06, 9.0959e-01, 3.1960e-03, - 2DIAGNOSTIC, 60, -6.654835648918e-01, 3.555824620801e-06, 9.1240e-01, 2.8179e-03, - 2DIAGNOSTIC, 61, -6.654864521773e-01, 3.478097310997e-06, 9.1799e-01, 5.5890e-03, - 2DIAGNOSTIC, 62, -6.654885391579e-01, 3.162546805234e-06, 9.2757e-01, 9.5730e-03, - 2DIAGNOSTIC, 63, -6.654893844355e-01, 2.790482370646e-06, 9.3631e-01, 8.7452e-03, - 2DIAGNOSTIC, 64, -6.654896042481e-01, 2.205694701985e-06, 9.4084e-01, 4.5261e-03, - 2DIAGNOSTIC, 65, -6.654905929465e-01, 2.407759730289e-06, 9.4544e-01, 4.6070e-03, - 2DIAGNOSTIC, 66, -6.654936016033e-01, 1.594396187687e-06, 9.5342e-01, 7.9780e-03, - 2DIAGNOSTIC, 67, -6.657836802177e-01, 2.525384606364e-06, 9.7742e-01, 2.4000e-02, - 2DIAGNOSTIC, 68, -6.657849773544e-01, 4.064450260936e-06, 9.8539e-01, 7.9691e-03, - 2DIAGNOSTIC, 69, -6.657849919210e-01, 5.242493788924e-06, 9.9543e-01, 1.0038e-02, - 2DIAGNOSTIC, 70, -6.657849923569e-01, 5.968969714330e-06, 1.0020e+00, 6.5560e-03, - 2DIAGNOSTIC, 71, -6.657849923641e-01, 6.153544627636e-06, 1.0190e+00, 1.6973e-02, - 2DIAGNOSTIC, 72, -6.657849923642e-01, 5.765943901503e-06, 1.0474e+00, 2.8399e-02, - 2DIAGNOSTIC, 73, -6.657849923642e-01, 4.874155418468e-06, 1.0624e+00, 1.5063e-02, - 2DIAGNOSTIC, 74, -6.657849923642e-01, 3.606914366634e-06, 1.0794e+00, 1.7010e-02, - 2DIAGNOSTIC, 75, -6.657849923642e-01, 2.092158175388e-06, 1.0970e+00, 1.7576e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.486082298224e-01, 1.797693134862e+308, 1.5315e+00, 4.3445e-01, - 2DIAGNOSTIC, 2, -5.495755812795e-01, 1.797693134862e+308, 1.5758e+00, 4.4313e-02, - 2DIAGNOSTIC, 3, -5.503766625298e-01, 1.797693134862e+308, 1.6249e+00, 4.9088e-02, - 2DIAGNOSTIC, 4, -5.509091778202e-01, 1.797693134862e+308, 1.6443e+00, 1.9439e-02, - 2DIAGNOSTIC, 5, -5.514166915109e-01, 1.797693134862e+308, 1.6759e+00, 3.1603e-02, - 2DIAGNOSTIC, 6, -5.524844248332e-01, 1.797693134862e+308, 1.7093e+00, 3.3400e-02, - 2DIAGNOSTIC, 7, -5.526580426308e-01, 1.797693134862e+308, 1.7474e+00, 3.8141e-02, - 2DIAGNOSTIC, 8, -5.528612232809e-01, 1.797693134862e+308, 1.7769e+00, 2.9417e-02, - 2DIAGNOSTIC, 9, -5.531075354942e-01, 1.797693134862e+308, 1.8130e+00, 3.6151e-02, - 2DIAGNOSTIC, 10, -5.532427841562e-01, 5.420705083198e-04, 1.8522e+00, 3.9210e-02, - 2DIAGNOSTIC, 11, -5.533290157865e-01, 4.011550259252e-04, 1.9025e+00, 5.0314e-02, - 2DIAGNOSTIC, 12, -5.533839017016e-01, 2.914111711938e-04, 1.9431e+00, 4.0599e-02, - 2DIAGNOSTIC, 13, -5.534044619635e-01, 2.052679949486e-04, 1.9787e+00, 3.5523e-02, - 2DIAGNOSTIC, 14, -5.535510469230e-01, 1.379100776804e-04, 2.0123e+00, 3.3644e-02, - 2DIAGNOSTIC, 15, -5.536698961702e-01, 8.757649711003e-05, 2.0545e+00, 4.2190e-02, - 2DIAGNOSTIC, 16, -5.538097255658e-01, 7.449116981131e-05, 2.0878e+00, 3.3354e-02, - 2DIAGNOSTIC, 17, -5.538215304737e-01, 6.182291136297e-05, 2.1635e+00, 7.5649e-02, - 2DIAGNOSTIC, 18, -5.538272371594e-01, 5.094591095697e-05, 2.1870e+00, 2.3546e-02, - 2DIAGNOSTIC, 19, -5.538333151979e-01, 4.342065649795e-05, 2.2187e+00, 3.1623e-02, - 2DIAGNOSTIC, 20, -5.538432732738e-01, 3.639036442835e-05, 2.2571e+00, 3.8470e-02, - 2DIAGNOSTIC, 21, -5.538550403288e-01, 2.914315091049e-05, 2.2817e+00, 2.4588e-02, - 2DIAGNOSTIC, 22, -5.538669108937e-01, 2.159003627707e-05, 2.3055e+00, 2.3748e-02, - 2DIAGNOSTIC, 23, -5.538776836389e-01, 1.349579108932e-05, 2.3447e+00, 3.9280e-02, - 2DIAGNOSTIC, 24, -5.538898495859e-01, 8.307383131144e-06, 2.3729e+00, 2.8111e-02, - 2DIAGNOSTIC, 25, -5.539005734639e-01, 5.461000610468e-06, 2.4169e+00, 4.4029e-02, - 2DIAGNOSTIC, 26, -5.538999465074e-01, 5.183855031558e-06, 2.4520e+00, 3.5097e-02, - 2DIAGNOSTIC, 27, -5.539143613603e-01, 5.056136447266e-06, 2.4998e+00, 4.7856e-02, - 2DIAGNOSTIC, 28, -5.539315179998e-01, 4.984703874042e-06, 2.5496e+00, 4.9745e-02, - 2DIAGNOSTIC, 29, -5.539056511607e-01, 4.194276110620e-06, 2.6117e+00, 6.2142e-02, - 2DIAGNOSTIC, 30, -5.539063354177e-01, 3.362330594746e-06, 2.6730e+00, 6.1306e-02, - 2DIAGNOSTIC, 31, -5.539083368333e-01, 2.592202079946e-06, 2.6970e+00, 2.3961e-02, - 2DIAGNOSTIC, 32, -5.539123989759e-01, 1.965632073817e-06, 2.7293e+00, 3.2274e-02, - 2DIAGNOSTIC, 33, -5.539148230929e-01, 1.481901251897e-06, 2.8252e+00, 9.5939e-02, - 2DIAGNOSTIC, 34, -5.539148825821e-01, 1.166937739369e-06, 2.8461e+00, 2.0901e-02, - 2DIAGNOSTIC, 35, -5.539150196176e-01, 1.017027913761e-06, 2.8886e+00, 4.2440e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.586792325824e-01, 1.797693134862e+308, 3.5841e+00, 6.9552e-01, - 2DIAGNOSTIC, 2, -4.593302206977e-01, 1.797693134862e+308, 3.7383e+00, 1.5420e-01, - 2DIAGNOSTIC, 3, -4.596979128893e-01, 1.797693134862e+308, 3.8854e+00, 1.4709e-01, - 2DIAGNOSTIC, 4, -4.599173538487e-01, 1.797693134862e+308, 4.0534e+00, 1.6799e-01, - 2DIAGNOSTIC, 5, -4.603915825914e-01, 1.797693134862e+308, 4.3010e+00, 2.4769e-01, - 2DIAGNOSTIC, 6, -4.608789920769e-01, 1.797693134862e+308, 4.5855e+00, 2.8449e-01, - 2DIAGNOSTIC, 7, -4.609040813965e-01, 1.797693134862e+308, 4.7880e+00, 2.0243e-01, - 2DIAGNOSTIC, 8, -4.609445516397e-01, 1.797693134862e+308, 4.9588e+00, 1.7088e-01, - 2DIAGNOSTIC, 9, -4.609915556655e-01, 1.797693134862e+308, 5.1243e+00, 1.6550e-01, - 2DIAGNOSTIC, 10, -4.610562144675e-01, 3.270334641902e-04, 5.3025e+00, 1.7819e-01, - 2DIAGNOSTIC, 11, -4.611215102083e-01, 2.270791220051e-04, 5.5177e+00, 2.1517e-01, - 2DIAGNOSTIC, 12, -4.611393946872e-01, 1.579685351630e-04, 5.6612e+00, 1.4350e-01, - 2DIAGNOSTIC, 13, -4.611543540441e-01, 1.040189564725e-04, 5.8994e+00, 2.3819e-01, - 2DIAGNOSTIC, 14, -4.611823267902e-01, 5.913145427061e-05, 6.1272e+00, 2.2777e-01, - 2DIAGNOSTIC, 15, -4.611842951243e-01, 3.402567294999e-05, 6.3579e+00, 2.3076e-01, - 2DIAGNOSTIC, 16, -4.611898457637e-01, 2.813389426544e-05, 6.5731e+00, 2.1516e-01, - 2DIAGNOSTIC, 17, -4.611946336561e-01, 2.162025858138e-05, 6.7368e+00, 1.6376e-01, - 2DIAGNOSTIC, 18, -4.611996956889e-01, 1.556879971917e-05, 6.9387e+00, 2.0182e-01, - 2DIAGNOSTIC, 19, -4.612058654975e-01, 1.056035390225e-05, 7.0866e+00, 1.4798e-01, - 2DIAGNOSTIC, 20, -4.612281081264e-01, 7.858396275623e-06, 7.2475e+00, 1.6089e-01, - 2DIAGNOSTIC, 21, -4.612363711049e-01, 6.977021323233e-06, 7.4760e+00, 2.2847e-01, - 2DIAGNOSTIC, 22, -4.612370264054e-01, 6.184456934032e-06, 7.6740e+00, 1.9796e-01, - 2DIAGNOSTIC, 23, -4.612390616473e-01, 5.463456340830e-06, 7.9324e+00, 2.5842e-01, - 2DIAGNOSTIC, 24, -4.612420248703e-01, 5.214358819373e-06, 8.2228e+00, 2.9046e-01, - 2DIAGNOSTIC, 25, -4.612420394235e-01, 4.656787264988e-06, 8.4448e+00, 2.2197e-01, - 2DIAGNOSTIC, 26, -4.612420445346e-01, 3.952581435901e-06, 8.6106e+00, 1.6576e-01, - 2DIAGNOSTIC, 27, -4.612420551075e-01, 3.159861485399e-06, 8.7851e+00, 1.7455e-01, - 2DIAGNOSTIC, 28, -4.612420914894e-01, 2.353197428216e-06, 8.9443e+00, 1.5915e-01, - 2DIAGNOSTIC, 29, -4.612421899656e-01, 1.608174162351e-06, 9.0872e+00, 1.4296e-01, - 2DIAGNOSTIC, 30, -4.612423814345e-01, 1.321413768948e-06, 9.2287e+00, 1.4143e-01, - 2DIAGNOSTIC, 31, -4.612426904870e-01, 1.200034829819e-06, 9.4197e+00, 1.9105e-01, - 2DIAGNOSTIC, 32, -4.612418231396e-01, 1.065220095887e-06, 9.7029e+00, 2.8323e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.967646845740e-01, 1.797693134862e+308, 1.2190e+01, 2.4868e+00, - 2DIAGNOSTIC, 2, -3.969216694778e-01, 1.797693134862e+308, 1.3313e+01, 1.1237e+00, - 2DIAGNOSTIC, 3, -3.969815867014e-01, 1.797693134862e+308, 1.5049e+01, 1.7361e+00, - 2DIAGNOSTIC, 4, -3.969861102395e-01, 1.797693134862e+308, 1.6065e+01, 1.0157e+00, - 2DIAGNOSTIC, 5, -3.970072361863e-01, 1.797693134862e+308, 1.7092e+01, 1.0269e+00, - 2DIAGNOSTIC, 6, -3.970267499465e-01, 1.797693134862e+308, 1.8014e+01, 9.2169e-01, - 2DIAGNOSTIC, 7, -3.970382329384e-01, 1.797693134862e+308, 1.9086e+01, 1.0720e+00, - 2DIAGNOSTIC, 8, -3.970419527323e-01, 1.797693134862e+308, 2.0096e+01, 1.0102e+00, - 2DIAGNOSTIC, 9, -3.970482381586e-01, 1.797693134862e+308, 2.1126e+01, 1.0296e+00, - 2DIAGNOSTIC, 10, -3.970619013807e-01, 3.738214437912e-05, 2.2234e+01, 1.1084e+00, - 2DIAGNOSTIC, 11, -3.972227719862e-01, 3.107053633804e-05, 2.3746e+01, 1.5122e+00, - 2DIAGNOSTIC, 12, -3.972274377701e-01, 3.257403645253e-05, 2.5484e+01, 1.7379e+00, - 2DIAGNOSTIC, 13, -3.972274361439e-01, 3.457251584499e-05, 2.6706e+01, 1.2221e+00, - 2DIAGNOSTIC, 14, -3.972272389010e-01, 3.370763464980e-05, 2.8007e+01, 1.3011e+00, - 2DIAGNOSTIC, 15, -3.972273280739e-01, 3.104639771978e-05, 2.9311e+01, 1.3036e+00, - 2DIAGNOSTIC, 16, -3.972272226705e-01, 2.680096682528e-05, 3.0573e+01, 1.2627e+00, - 2DIAGNOSTIC, 17, -3.972271011510e-01, 2.122867043516e-05, 3.1560e+01, 9.8699e-01, - 2DIAGNOSTIC, 18, -3.972268520304e-01, 1.472875652581e-05, 3.2624e+01, 1.0634e+00, - 2DIAGNOSTIC, 19, -3.972267660810e-01, 8.007196558725e-06, 3.3708e+01, 1.0846e+00, - 2DIAGNOSTIC, 20, -3.972268315318e-01, 1.697647150738e-06, 3.4809e+01, 1.1004e+00, - 2DIAGNOSTIC, 21, -3.972268013371e-01, 1.455931242608e-06, 3.6155e+01, 1.3460e+00, - 2DIAGNOSTIC, 22, -3.972265567551e-01, 1.385644961889e-06, 3.7186e+01, 1.0311e+00, - 2DIAGNOSTIC, 23, -3.972264784254e-01, 1.325209886771e-06, 3.8422e+01, 1.2357e+00, - 2DIAGNOSTIC, 24, -3.972263998881e-01, 1.266898448739e-06, 3.9635e+01, 1.2138e+00, - 2DIAGNOSTIC, 25, -3.972263331900e-01, 1.219254658485e-06, 4.0569e+01, 9.3385e-01, - 2DIAGNOSTIC, 26, -3.972261759621e-01, 1.173073331959e-06, 4.1786e+01, 1.2171e+00, - 2DIAGNOSTIC, 27, -3.972261148655e-01, 1.130620102541e-06, 4.2831e+01, 1.0450e+00, - 2DIAGNOSTIC, 28, -3.972261076399e-01, 1.089259215367e-06, 4.3959e+01, 1.1280e+00, - 2DIAGNOSTIC, 29, -3.972258172831e-01, 1.045725376771e-06, 4.5127e+01, 1.1676e+00, - 2DIAGNOSTIC, 30, -3.972257608608e-01, 1.010309429589e-06, 4.6271e+01, 1.1440e+00, - Elapsed time (stage 1): 4.7008e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.946584432095e-01, 1.797693134862e+308, 3.7078e-01, 3.7078e-01, - 1DIAGNOSTIC, 2, -9.049268820696e-01, 1.797693134862e+308, 5.3452e-01, 1.6374e-01, - 1DIAGNOSTIC, 3, -9.130013077070e-01, 1.797693134862e+308, 7.4779e-01, 2.1326e-01, - 1DIAGNOSTIC, 4, -9.197944066252e-01, 1.797693134862e+308, 9.6381e-01, 2.1602e-01, - 1DIAGNOSTIC, 5, -9.249327019245e-01, 1.797693134862e+308, 1.1491e+00, 1.8525e-01, - 1DIAGNOSTIC, 6, -9.295824354386e-01, 1.797693134862e+308, 1.2980e+00, 1.4895e-01, - 1DIAGNOSTIC, 7, -9.330294293881e-01, 1.797693134862e+308, 1.4438e+00, 1.4578e-01, - 1DIAGNOSTIC, 8, -9.361368771260e-01, 1.797693134862e+308, 1.5984e+00, 1.5462e-01, - 1DIAGNOSTIC, 9, -9.388124284546e-01, 1.797693134862e+308, 1.7501e+00, 1.5171e-01, - 1DIAGNOSTIC, 10, -9.411594227804e-01, 3.058657514420e-03, 1.9150e+00, 1.6491e-01, - 1DIAGNOSTIC, 11, -9.432496944216e-01, 2.294466417354e-03, 2.0798e+00, 1.6475e-01, - 1DIAGNOSTIC, 12, -9.451202301636e-01, 1.761032884932e-03, 2.3261e+00, 2.4632e-01, - 1DIAGNOSTIC, 13, -9.468042043021e-01, 1.379326695304e-03, 2.5254e+00, 1.9931e-01, - 1DIAGNOSTIC, 14, -9.482405108937e-01, 1.105790121483e-03, 2.7226e+00, 1.9721e-01, - 1DIAGNOSTIC, 15, -9.494500717704e-01, 8.960602311866e-04, 2.8899e+00, 1.6722e-01, - 1DIAGNOSTIC, 16, -9.506413076922e-01, 7.412515333347e-04, 3.0586e+00, 1.6878e-01, - 1DIAGNOSTIC, 17, -9.516486871583e-01, 6.156619773302e-04, 3.2019e+00, 1.4323e-01, - 1DIAGNOSTIC, 18, -9.525374525453e-01, 5.142845800792e-04, 3.3490e+00, 1.4714e-01, - 1DIAGNOSTIC, 19, -9.533203997777e-01, 4.309559017630e-04, 3.5223e+00, 1.7327e-01, - 1DIAGNOSTIC, 20, -9.540631590903e-01, 3.625892508721e-04, 3.6847e+00, 1.6238e-01, - 1DIAGNOSTIC, 21, -9.546791914034e-01, 3.058004442391e-04, 3.9023e+00, 2.1767e-01, - 1DIAGNOSTIC, 22, -9.553215376052e-01, 2.600328437342e-04, 4.0994e+00, 1.9710e-01, - 1DIAGNOSTIC, 23, -9.556223683847e-01, 2.198935636366e-04, 4.2989e+00, 1.9950e-01, - 1DIAGNOSTIC, 24, -9.559804016517e-01, 1.851225417554e-04, 4.4555e+00, 1.5654e-01, - 1DIAGNOSTIC, 25, -9.554878411778e-01, 1.443465606844e-04, 4.6287e+00, 1.7324e-01, - 1DIAGNOSTIC, 26, -9.560205341763e-01, 1.133614046163e-04, 4.7839e+00, 1.5522e-01, - 1DIAGNOSTIC, 27, -9.555847369892e-01, 8.016949175634e-05, 4.9608e+00, 1.7683e-01, - 1DIAGNOSTIC, 28, -9.558374648917e-01, 5.422185610442e-05, 5.1276e+00, 1.6682e-01, - 1DIAGNOSTIC, 29, -9.553941322963e-01, 2.848184489818e-05, 5.2764e+00, 1.4880e-01, - 1DIAGNOSTIC, 30, -9.559181933221e-01, 1.470781776256e-05, 5.5193e+00, 2.4297e-01, - 1DIAGNOSTIC, 31, -9.554824161707e-01, 1.998594907911e-06, 5.7527e+00, 2.3335e-01, - 1DIAGNOSTIC, 32, -9.560595740049e-01, 1.513840678140e-06, 5.9743e+00, 2.2161e-01, - 1DIAGNOSTIC, 33, -9.556380415955e-01, -2.879908507641e-07, 6.1406e+00, 1.6630e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.078774672758e-01, 1.797693134862e+308, 7.4069e+00, 1.2663e+00, - 1DIAGNOSTIC, 2, -9.120358357500e-01, 1.797693134862e+308, 8.3763e+00, 9.6941e-01, - 1DIAGNOSTIC, 3, -9.159234787468e-01, 1.797693134862e+308, 9.4899e+00, 1.1136e+00, - 1DIAGNOSTIC, 4, -9.191210332652e-01, 1.797693134862e+308, 1.0459e+01, 9.6928e-01, - 1DIAGNOSTIC, 5, -9.219002360831e-01, 1.797693134862e+308, 1.1599e+01, 1.1398e+00, - 1DIAGNOSTIC, 6, -9.243735986216e-01, 1.797693134862e+308, 1.2652e+01, 1.0530e+00, - 1DIAGNOSTIC, 7, -9.263680502576e-01, 1.797693134862e+308, 1.3697e+01, 1.0454e+00, - 1DIAGNOSTIC, 8, -9.280400110820e-01, 1.797693134862e+308, 1.4751e+01, 1.0536e+00, - 1DIAGNOSTIC, 9, -9.293475206020e-01, 1.797693134862e+308, 1.5787e+01, 1.0365e+00, - 1DIAGNOSTIC, 10, -9.304669727155e-01, 1.545587108544e-03, 1.6956e+01, 1.1684e+00, - 1DIAGNOSTIC, 11, -9.314394061409e-01, 1.192879695307e-03, 1.8052e+01, 1.0964e+00, - 1DIAGNOSTIC, 12, -9.322988886091e-01, 9.197381447089e-04, 1.9082e+01, 1.0300e+00, - 1DIAGNOSTIC, 13, -9.330651833056e-01, 7.150738523194e-04, 2.0296e+01, 1.2140e+00, - 1DIAGNOSTIC, 14, -9.337540775639e-01, 5.595270304002e-04, 2.1420e+01, 1.1235e+00, - 1DIAGNOSTIC, 15, -9.343764481482e-01, 4.428104515306e-04, 2.2482e+01, 1.0619e+00, - 1DIAGNOSTIC, 16, -9.349403335216e-01, 3.579826261983e-04, 2.3626e+01, 1.1442e+00, - 1DIAGNOSTIC, 17, -9.354661467595e-01, 2.953559459851e-04, 2.4824e+01, 1.1982e+00, - 1DIAGNOSTIC, 18, -9.359579572476e-01, 2.490761705161e-04, 2.5832e+01, 1.0077e+00, - 1DIAGNOSTIC, 19, -9.364076683847e-01, 2.127911277360e-04, 2.6932e+01, 1.1004e+00, - 1DIAGNOSTIC, 20, -9.368290537313e-01, 1.838665357819e-04, 2.8057e+01, 1.1243e+00, - 1DIAGNOSTIC, 21, -9.372084399466e-01, 1.602104589797e-04, 2.9041e+01, 9.8473e-01, - 1DIAGNOSTIC, 22, -9.375604887825e-01, 1.405566267100e-04, 3.0148e+01, 1.1070e+00, - 1DIAGNOSTIC, 23, -9.378722981656e-01, 1.237712966147e-04, 3.1191e+01, 1.0430e+00, - 1DIAGNOSTIC, 24, -9.381578378150e-01, 1.091890579087e-04, 3.2290e+01, 1.0986e+00, - 1DIAGNOSTIC, 25, -9.384193259358e-01, 9.633255922779e-05, 3.3366e+01, 1.0757e+00, - 1DIAGNOSTIC, 26, -9.386589978797e-01, 8.485970851838e-05, 3.4376e+01, 1.0109e+00, - 1DIAGNOSTIC, 27, -9.388919939437e-01, 7.484567148425e-05, 3.5505e+01, 1.1290e+00, - 1DIAGNOSTIC, 28, -9.390997492195e-01, 6.613897980720e-05, 3.6584e+01, 1.0782e+00, - 1DIAGNOSTIC, 29, -9.393026585060e-01, 5.868559918180e-05, 3.7694e+01, 1.1102e+00, - 1DIAGNOSTIC, 30, -9.394725638297e-01, 5.222814470895e-05, 3.8790e+01, 1.0958e+00, - 1DIAGNOSTIC, 31, -9.396374438341e-01, 4.663940838831e-05, 3.9865e+01, 1.0753e+00, - 1DIAGNOSTIC, 32, -9.397846542055e-01, 4.178084007451e-05, 4.0864e+01, 9.9930e-01, - 1DIAGNOSTIC, 33, -9.399337366135e-01, 3.755697871075e-05, 4.1983e+01, 1.1186e+00, - 1DIAGNOSTIC, 34, -9.400660991769e-01, 3.380826389807e-05, 4.3000e+01, 1.0167e+00, - 1DIAGNOSTIC, 35, -9.401902148686e-01, 3.047103016413e-05, 4.4196e+01, 1.1968e+00, - 1DIAGNOSTIC, 36, -9.403058296513e-01, 2.748019159466e-05, 4.5248e+01, 1.0516e+00, - 1DIAGNOSTIC, 37, -9.404130093697e-01, 2.488904412684e-05, 4.6333e+01, 1.0853e+00, - 1DIAGNOSTIC, 38, -9.405140844765e-01, 2.258818374156e-05, 4.7515e+01, 1.1820e+00, - 1DIAGNOSTIC, 39, -9.406081789042e-01, 2.062571480900e-05, 4.8556e+01, 1.0410e+00, - 1DIAGNOSTIC, 40, -9.406943649162e-01, 1.879763328157e-05, 4.9591e+01, 1.0349e+00, - 1DIAGNOSTIC, 41, -9.407758349484e-01, 1.715035059664e-05, 5.0730e+01, 1.1390e+00, - 1DIAGNOSTIC, 42, -9.408607618339e-01, 1.567913849874e-05, 5.1759e+01, 1.0286e+00, - 1DIAGNOSTIC, 43, -9.409324283515e-01, 1.439315127343e-05, 5.2882e+01, 1.1228e+00, - 1DIAGNOSTIC, 44, -9.409985152990e-01, 1.321686247866e-05, 5.3956e+01, 1.0740e+00, - 1DIAGNOSTIC, 45, -9.410614099339e-01, 1.214845314020e-05, 5.4972e+01, 1.0166e+00, - 1DIAGNOSTIC, 46, -9.411167791790e-01, 1.114855536021e-05, 5.6097e+01, 1.1252e+00, - 1DIAGNOSTIC, 47, -9.411684908514e-01, 1.020517277175e-05, 5.7177e+01, 1.0798e+00, - 1DIAGNOSTIC, 48, -9.412191617162e-01, 9.338375819085e-06, 5.8196e+01, 1.0192e+00, - 1DIAGNOSTIC, 49, -9.412650693933e-01, 8.534662152108e-06, 5.9382e+01, 1.1858e+00, - 1DIAGNOSTIC, 50, -9.413079292594e-01, 7.783054687845e-06, 6.0456e+01, 1.0742e+00, - 1DIAGNOSTIC, 51, -9.413492668835e-01, 7.097797769570e-06, 6.1510e+01, 1.0536e+00, - 1DIAGNOSTIC, 52, -9.413907469051e-01, 6.548731812158e-06, 6.2649e+01, 1.1390e+00, - 1DIAGNOSTIC, 53, -9.414271097761e-01, 6.062129770387e-06, 6.3733e+01, 1.0845e+00, - 1DIAGNOSTIC, 54, -9.414616699471e-01, 5.628650920214e-06, 6.4763e+01, 1.0295e+00, - 1DIAGNOSTIC, 55, -9.414899829385e-01, 5.225259989687e-06, 6.5801e+01, 1.0386e+00, - 1DIAGNOSTIC, 56, -9.415197095309e-01, 4.846726430464e-06, 6.6856e+01, 1.0542e+00, - 1DIAGNOSTIC, 57, -9.415495425040e-01, 4.499105858976e-06, 6.7961e+01, 1.1055e+00, - 1DIAGNOSTIC, 58, -9.415772330350e-01, 4.189736354618e-06, 6.9046e+01, 1.0844e+00, - 1DIAGNOSTIC, 59, -9.416034716352e-01, 3.908108928963e-06, 7.0112e+01, 1.0668e+00, - 1DIAGNOSTIC, 60, -9.416314835813e-01, 3.667033553419e-06, 7.1198e+01, 1.0858e+00, - 1DIAGNOSTIC, 61, -9.416560841104e-01, 3.455855578427e-06, 7.2276e+01, 1.0774e+00, - 1DIAGNOSTIC, 62, -9.416706125376e-01, 3.239601676430e-06, 7.3369e+01, 1.0938e+00, - 1DIAGNOSTIC, 63, -9.416907581528e-01, 3.037867977014e-06, 7.4490e+01, 1.1203e+00, - 1DIAGNOSTIC, 64, -9.417115327025e-01, 2.858310550476e-06, 7.5518e+01, 1.0288e+00, - 1DIAGNOSTIC, 65, -9.417326193002e-01, 2.683954898920e-06, 7.6610e+01, 1.0920e+00, - 1DIAGNOSTIC, 66, -9.417487364863e-01, 2.511336254989e-06, 7.7687e+01, 1.0767e+00, - 1DIAGNOSTIC, 67, -9.417654651136e-01, 2.358088257451e-06, 7.8709e+01, 1.0218e+00, - 1DIAGNOSTIC, 68, -9.417843131483e-01, 2.233833026357e-06, 7.9833e+01, 1.1240e+00, - 1DIAGNOSTIC, 69, -9.418009402325e-01, 2.127913264654e-06, 8.0876e+01, 1.0428e+00, - 1DIAGNOSTIC, 70, -9.418131118423e-01, 2.035765068091e-06, 8.2014e+01, 1.1381e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.967182366767e-01, 1.797693134862e+308, 9.0926e+01, 8.9120e+00, - 1DIAGNOSTIC, 2, -8.995108416522e-01, 1.797693134862e+308, 9.8863e+01, 7.9374e+00, - 1DIAGNOSTIC, 3, -9.022188060048e-01, 1.797693134862e+308, 1.0751e+02, 8.6516e+00, - 1DIAGNOSTIC, 4, -9.048947317707e-01, 1.797693134862e+308, 1.1577e+02, 8.2584e+00, - 1DIAGNOSTIC, 5, -9.070335323150e-01, 1.797693134862e+308, 1.2419e+02, 8.4211e+00, - 1DIAGNOSTIC, 6, -9.089589659951e-01, 1.797693134862e+308, 1.3243e+02, 8.2382e+00, - 1DIAGNOSTIC, 7, -9.106795800285e-01, 1.797693134862e+308, 1.4080e+02, 8.3627e+00, - 1DIAGNOSTIC, 8, -9.122146796552e-01, 1.797693134862e+308, 1.4915e+02, 8.3544e+00, - 1DIAGNOSTIC, 9, -9.135017815887e-01, 1.797693134862e+308, 1.5750e+02, 8.3487e+00, - 1DIAGNOSTIC, 10, -9.147741539439e-01, 1.266404534011e-03, 1.6565e+02, 8.1483e+00, - 1DIAGNOSTIC, 11, -9.158436377320e-01, 1.028799026401e-03, 1.7371e+02, 8.0651e+00, - 1DIAGNOSTIC, 12, -9.168029561914e-01, 8.357100260208e-04, 1.8185e+02, 8.1429e+00, - 1DIAGNOSTIC, 13, -9.175891095065e-01, 6.801647499000e-04, 1.9026e+02, 8.4032e+00, - 1DIAGNOSTIC, 14, -9.183199275576e-01, 5.606914339944e-04, 1.9881e+02, 8.5564e+00, - 1DIAGNOSTIC, 15, -9.190030655395e-01, 4.642982358365e-04, 2.0693e+02, 8.1110e+00, - 1DIAGNOSTIC, 16, -9.196429815955e-01, 3.870354518830e-04, 2.1522e+02, 8.2992e+00, - 1DIAGNOSTIC, 17, -9.202469377012e-01, 3.256001926750e-04, 2.2349e+02, 8.2666e+00, - 1DIAGNOSTIC, 18, -9.208183692475e-01, 2.772341717045e-04, 2.3174e+02, 8.2475e+00, - 1DIAGNOSTIC, 19, -9.213570739729e-01, 2.380107071303e-04, 2.4017e+02, 8.4293e+00, - 1DIAGNOSTIC, 20, -9.218764914696e-01, 2.083388069837e-04, 2.4856e+02, 8.3965e+00, - 1DIAGNOSTIC, 21, -9.223752892013e-01, 1.851895489149e-04, 2.5728e+02, 8.7167e+00, - 1DIAGNOSTIC, 22, -9.228521412952e-01, 1.670854286312e-04, 2.6587e+02, 8.5921e+00, - 1DIAGNOSTIC, 23, -9.233131624287e-01, 1.517237454551e-04, 2.7430e+02, 8.4257e+00, - 1DIAGNOSTIC, 24, -9.237503032356e-01, 1.384973595512e-04, 2.8284e+02, 8.5368e+00, - 1DIAGNOSTIC, 25, -9.241759873802e-01, 1.270677698632e-04, 2.9138e+02, 8.5419e+00, - 1DIAGNOSTIC, 26, -9.245825139740e-01, 1.170348900530e-04, 2.9985e+02, 8.4721e+00, - 1DIAGNOSTIC, 27, -9.249675072269e-01, 1.080704775875e-04, 3.0826e+02, 8.4058e+00, - 1DIAGNOSTIC, 28, -9.253370639036e-01, 9.997174550021e-05, 3.1626e+02, 8.0075e+00, - 1DIAGNOSTIC, 29, -9.256906492503e-01, 9.252800349069e-05, 3.2459e+02, 8.3269e+00, - 1DIAGNOSTIC, 30, -9.260243401779e-01, 8.564669645424e-05, 3.3284e+02, 8.2510e+00, - 1DIAGNOSTIC, 31, -9.263388585827e-01, 7.923802568589e-05, 3.4113e+02, 8.2906e+00, - 1DIAGNOSTIC, 32, -9.266335468306e-01, 7.320091076705e-05, 3.4953e+02, 8.4020e+00, - 1DIAGNOSTIC, 33, -9.268961826683e-01, 6.739355279822e-05, 3.5795e+02, 8.4159e+00, - 1DIAGNOSTIC, 34, -9.271350240279e-01, 6.170481956331e-05, 3.6637e+02, 8.4170e+00, - 1DIAGNOSTIC, 35, -9.273502420922e-01, 5.616887705302e-05, 3.7461e+02, 8.2432e+00, - 1DIAGNOSTIC, 36, -9.275487256722e-01, 5.082596998512e-05, 3.8316e+02, 8.5525e+00, - 1DIAGNOSTIC, 37, -9.277290979078e-01, 4.568960819221e-05, 3.9134e+02, 8.1778e+00, - 1DIAGNOSTIC, 38, -9.278943509398e-01, 4.085618112849e-05, 3.9987e+02, 8.5314e+00, - 1DIAGNOSTIC, 39, -9.280455154605e-01, 3.641334332610e-05, 4.0798e+02, 8.1042e+00, - 1DIAGNOSTIC, 40, -9.281880835930e-01, 3.243625537731e-05, 4.1605e+02, 8.0718e+00, - 1DIAGNOSTIC, 41, -9.283186584184e-01, 2.894793022029e-05, 4.2474e+02, 8.6949e+00, - 1DIAGNOSTIC, 42, -9.284443358002e-01, 2.599308390498e-05, 4.3309e+02, 8.3488e+00, - 1DIAGNOSTIC, 43, -9.285576471441e-01, 2.343348530934e-05, 4.4171e+02, 8.6197e+00, - 1DIAGNOSTIC, 44, -9.286653755060e-01, 2.122636306693e-05, 4.4997e+02, 8.2574e+00, - 1DIAGNOSTIC, 45, -9.287660164285e-01, 1.929827873051e-05, 4.5847e+02, 8.5021e+00, - 1DIAGNOSTIC, 46, -9.288643522764e-01, 1.764402524153e-05, 4.6690e+02, 8.4304e+00, - 1DIAGNOSTIC, 47, -9.289561611091e-01, 1.620325305579e-05, 4.7529e+02, 8.3868e+00, - 1DIAGNOSTIC, 48, -9.290434292709e-01, 1.494038136724e-05, 4.8289e+02, 7.6022e+00, - 1DIAGNOSTIC, 49, -9.291267732006e-01, 1.382066566846e-05, 4.9125e+02, 8.3623e+00, - 1DIAGNOSTIC, 50, -9.292086967398e-01, 1.285263141696e-05, 4.9940e+02, 8.1445e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.983572492660e-01, 1.797693134862e+308, 5.7027e+02, 7.0870e+01, - 1DIAGNOSTIC, 2, -8.994944953436e-01, 1.797693134862e+308, 6.4047e+02, 7.0201e+01, - 1DIAGNOSTIC, 3, -9.011985897731e-01, 1.797693134862e+308, 7.1137e+02, 7.0900e+01, - 1DIAGNOSTIC, 4, -9.028861353654e-01, 1.797693134862e+308, 7.8047e+02, 6.9101e+01, - 1DIAGNOSTIC, 5, -9.045350257761e-01, 1.797693134862e+308, 8.5083e+02, 7.0365e+01, - 1DIAGNOSTIC, 6, -9.060365208097e-01, 1.797693134862e+308, 9.2126e+02, 7.0421e+01, - 1DIAGNOSTIC, 7, -9.073635248894e-01, 1.797693134862e+308, 9.8984e+02, 6.8583e+01, - 1DIAGNOSTIC, 8, -9.085464394236e-01, 1.797693134862e+308, 1.0597e+03, 6.9891e+01, - 1DIAGNOSTIC, 9, -9.096086243792e-01, 1.797693134862e+308, 1.1306e+03, 7.0914e+01, - 1DIAGNOSTIC, 10, -9.105693237595e-01, 8.997652435598e-04, 1.1987e+03, 6.8036e+01, - 1DIAGNOSTIC, 11, -9.113603124708e-01, 7.694675121449e-04, 1.2674e+03, 6.8700e+01, - 1DIAGNOSTIC, 12, -9.120746671368e-01, 6.399562302064e-04, 1.3365e+03, 6.9134e+01, - 1DIAGNOSTIC, 13, -9.126404800850e-01, 5.270206739929e-04, 1.4023e+03, 6.5814e+01, - 1DIAGNOSTIC, 14, -9.131709381305e-01, 4.316948980804e-04, 1.4475e+03, 4.5170e+01, - 1DIAGNOSTIC, 15, -9.136823048761e-01, 3.544922146028e-04, 1.4924e+03, 4.4938e+01, - 1DIAGNOSTIC, 16, -9.141687543332e-01, 2.930998037104e-04, 1.5373e+03, 4.4896e+01, - 1DIAGNOSTIC, 17, -9.146247215959e-01, 2.446022572368e-04, 1.5853e+03, 4.8019e+01, - 1DIAGNOSTIC, 18, -9.150686637151e-01, 2.070490435392e-04, 1.6362e+03, 5.0869e+01, - 1DIAGNOSTIC, 19, -9.154681170491e-01, 1.782028605064e-04, 1.6944e+03, 5.8140e+01, - 1DIAGNOSTIC, 20, -9.158348106908e-01, 1.563554639530e-04, 1.7395e+03, 4.5104e+01, - Elapsed time (stage 2): 1740 - - -Total elapsed time: 1830 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:04 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:04 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:07 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:12 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:15 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:15 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18510 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:16 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:18 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:19 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18562 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:19 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/anat/sub-PNC004_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:22 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:22 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18645 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:22 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18675 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:22 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:29 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:33 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:33 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:34 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:35 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:37 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:37 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:38 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:39 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:42 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:43 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:43 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:43 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/surf/sub-PNC004_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:46:54 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:05 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01/sub-PNC004_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC004 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:05 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC004 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:06 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC004 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:06 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19563 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:08 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:08 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc/sub-PNC004_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/xfm/sub-PNC004_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19605 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:10 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:10 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC004_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 87.550 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/logs/proc_func_18-03-2024-11242.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:24 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC004 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-01/QC/sub-PNC004_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/189_micapipe_proc-func_sub-PNC004_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC004* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 87.583 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC004_ses-01 -========================reprocessing without filter=================== -sub-PNC004_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC004 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC004 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC004 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC004 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:35 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:47:35 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:49:50 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:52:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 11:52:15 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.68 (mm) at sub-brick 21 -++ Max delta displ in automask = 0.50 (mm) at sub-brick 9 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:05:14 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:05:33 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:07:52 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:10:09 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-02/func/sub-PNC004_ses-02_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:12:26 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.255 -1.926 2.890 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 75.0 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = 0.034 -2.947 4.704 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.9 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:17:23 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:17:50 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55ba735d4a50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 62.072, -112.369] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ba7344b730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55ba735eb350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55ba735db600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [78.5956, 118.16, -130.715] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ba735dde40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55ba73de7f50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55ba73de6270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 62.072, -112.369] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ba735da640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55ba749121c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55ba73de5a00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [78.5956, 118.16, -130.715] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ba735e1390) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55ba7510c300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.871500440526e-01, 1.797693134862e+308, 4.4704e-02, 4.4704e-02, - 2DIAGNOSTIC, 2, -7.898468026081e-01, 1.797693134862e+308, 4.6002e-02, 1.2980e-03, - 2DIAGNOSTIC, 3, -7.948667146608e-01, 1.797693134862e+308, 4.7253e-02, 1.2510e-03, - 2DIAGNOSTIC, 4, -8.017604643570e-01, 1.797693134862e+308, 4.8537e-02, 1.2839e-03, - 2DIAGNOSTIC, 5, -8.135412668077e-01, 1.797693134862e+308, 4.9807e-02, 1.2701e-03, - 2DIAGNOSTIC, 6, -8.219378149202e-01, 1.797693134862e+308, 5.1321e-02, 1.5140e-03, - 2DIAGNOSTIC, 7, -8.287932664630e-01, 1.797693134862e+308, 5.2640e-02, 1.3189e-03, - 2DIAGNOSTIC, 8, -8.458573370485e-01, 1.797693134862e+308, 5.4382e-02, 1.7419e-03, - 2DIAGNOSTIC, 9, -8.555425743613e-01, 1.797693134862e+308, 5.7214e-02, 2.8329e-03, - 2DIAGNOSTIC, 10, -8.563011860033e-01, 6.118811001901e-03, 5.8720e-02, 1.5051e-03, - 2DIAGNOSTIC, 11, -8.558625968484e-01, 5.455934101900e-03, 6.0360e-02, 1.6401e-03, - 2DIAGNOSTIC, 12, -8.564347662948e-01, 4.516646095522e-03, 6.1762e-02, 1.4019e-03, - 2DIAGNOSTIC, 13, -8.561639079364e-01, 3.438558170952e-03, 6.3162e-02, 1.4000e-03, - 2DIAGNOSTIC, 14, -8.567297932294e-01, 2.381831269050e-03, 6.4609e-02, 1.4470e-03, - 2DIAGNOSTIC, 15, -8.571570464505e-01, 1.532892410148e-03, 6.6077e-02, 1.4679e-03, - 2DIAGNOSTIC, 16, -8.575706829581e-01, 8.441357610792e-04, 6.7513e-02, 1.4360e-03, - 2DIAGNOSTIC, 17, -8.580943452248e-01, 3.016677507246e-04, 6.8910e-02, 1.3971e-03, - 2DIAGNOSTIC, 18, -8.578640128264e-01, 1.060054070519e-04, 7.0350e-02, 1.4400e-03, - 2DIAGNOSTIC, 19, -8.594962986614e-01, 1.238219187420e-04, 7.2198e-02, 1.8480e-03, - 2DIAGNOSTIC, 20, -8.619845135306e-01, 1.828530881493e-04, 7.4102e-02, 1.9040e-03, - 2DIAGNOSTIC, 21, -8.629233843175e-01, 2.260747421441e-04, 7.5755e-02, 1.6530e-03, - 2DIAGNOSTIC, 22, -8.639667544843e-01, 2.697733657061e-04, 7.7151e-02, 1.3962e-03, - 2DIAGNOSTIC, 23, -8.627743613804e-01, 2.632383306571e-04, 7.8555e-02, 1.4038e-03, - 2DIAGNOSTIC, 24, -8.630686833713e-01, 2.452095729270e-04, 8.0001e-02, 1.4460e-03, - 2DIAGNOSTIC, 25, -8.665662682137e-01, 2.577308768912e-04, 8.1413e-02, 1.4119e-03, - 2DIAGNOSTIC, 26, -8.773409492752e-01, 3.880211467161e-04, 8.7183e-02, 5.7700e-03, - 2DIAGNOSTIC, 27, -8.773409351287e-01, 4.758163151327e-04, 8.8993e-02, 1.8101e-03, - 2DIAGNOSTIC, 28, -8.773418561751e-01, 5.120634662525e-04, 9.0694e-02, 1.7011e-03, - 2DIAGNOSTIC, 29, -8.773434125868e-01, 5.177832859391e-04, 9.2452e-02, 1.7581e-03, - 2DIAGNOSTIC, 30, -8.773460413599e-01, 5.005972255842e-04, 9.4220e-02, 1.7681e-03, - 2DIAGNOSTIC, 31, -8.773504777500e-01, 4.449672294949e-04, 9.5903e-02, 1.6830e-03, - 2DIAGNOSTIC, 32, -8.773579545007e-01, 3.624315734998e-04, 9.7939e-02, 2.0359e-03, - 2DIAGNOSTIC, 33, -8.773705262991e-01, 2.409881447281e-04, 1.0005e-01, 2.1131e-03, - 2DIAGNOSTIC, 34, -8.773915838242e-01, 1.075112699917e-04, 1.0166e-01, 1.6041e-03, - 2DIAGNOSTIC, 35, -8.774266944624e-01, 2.434613814460e-06, 1.0325e-01, 1.5912e-03, - 2DIAGNOSTIC, 36, -8.774842919067e-01, 3.347970555154e-06, 1.0488e-01, 1.6289e-03, - 2DIAGNOSTIC, 37, -8.775767415641e-01, 4.800037379050e-06, 1.0645e-01, 1.5740e-03, - 2DIAGNOSTIC, 38, -8.777232556286e-01, 7.075817860226e-06, 1.0804e-01, 1.5891e-03, - 2DIAGNOSTIC, 39, -8.779488148806e-01, 1.055169995738e-05, 1.0962e-01, 1.5779e-03, - 2DIAGNOSTIC, 40, -8.782698948300e-01, 1.557667807673e-05, 1.1107e-01, 1.4579e-03, - 2DIAGNOSTIC, 41, -8.768046654775e-01, 7.083857127502e-06, 1.1255e-01, 1.4789e-03, - 2DIAGNOSTIC, 42, -8.775064641878e-01, 4.377882506321e-06, 1.1401e-01, 1.4610e-03, - 2DIAGNOSTIC, 43, -8.775602111564e-01, 1.694910128563e-06, 1.1551e-01, 1.4970e-03, - 2DIAGNOSTIC, 44, -8.791377739610e-01, 1.091652168613e-05, 1.1717e-01, 1.6601e-03, - 2DIAGNOSTIC, 45, -8.816967069022e-01, 3.758535037073e-05, 1.1860e-01, 1.4310e-03, - 2DIAGNOSTIC, 46, -8.858080130842e-01, 8.928947038941e-05, 1.2072e-01, 2.1200e-03, - 2DIAGNOSTIC, 47, -8.872587209934e-01, 1.406494609199e-04, 1.2279e-01, 2.0630e-03, - 2DIAGNOSTIC, 48, -8.873253920466e-01, 1.779686639861e-04, 1.2424e-01, 1.4520e-03, - 2DIAGNOSTIC, 49, -8.883361558900e-01, 2.052705847580e-04, 1.2588e-01, 1.6432e-03, - 2DIAGNOSTIC, 50, -8.897379275880e-01, 2.230868082033e-04, 1.2737e-01, 1.4849e-03, - 2DIAGNOSTIC, 51, -8.884553722902e-01, 2.004341774465e-04, 1.2901e-01, 1.6460e-03, - 2DIAGNOSTIC, 52, -8.915114864733e-01, 1.838807677159e-04, 1.3135e-01, 2.3420e-03, - 2DIAGNOSTIC, 53, -8.916766058601e-01, 1.515216003792e-04, 1.3282e-01, 1.4610e-03, - 2DIAGNOSTIC, 54, -8.922300986211e-01, 1.188325646590e-04, 1.3427e-01, 1.4539e-03, - 2DIAGNOSTIC, 55, -8.924435837880e-01, 9.208266263041e-05, 1.3573e-01, 1.4632e-03, - 2DIAGNOSTIC, 56, -8.924610408075e-01, 8.166663914675e-05, 1.3716e-01, 1.4260e-03, - 2DIAGNOSTIC, 57, -8.924979233358e-01, 7.239324942731e-05, 1.3859e-01, 1.4360e-03, - 2DIAGNOSTIC, 58, -8.925595985174e-01, 5.701122674099e-05, 1.4068e-01, 2.0809e-03, - 2DIAGNOSTIC, 59, -8.925684437917e-01, 4.231314729155e-05, 1.4209e-01, 1.4131e-03, - 2DIAGNOSTIC, 60, -8.925732691126e-01, 3.218399309714e-05, 1.4354e-01, 1.4548e-03, - 2DIAGNOSTIC, 61, -8.925853601012e-01, 1.211505034112e-05, 1.4496e-01, 1.4162e-03, - 2DIAGNOSTIC, 62, -8.926218981850e-01, 7.962022616888e-06, 1.4662e-01, 1.6580e-03, - 2DIAGNOSTIC, 63, -8.927376086171e-01, 4.610621937785e-06, 1.4826e-01, 1.6389e-03, - 2DIAGNOSTIC, 64, -8.927512343068e-01, 3.830462352646e-06, 1.5063e-01, 2.3742e-03, - 2DIAGNOSTIC, 65, -8.927538939554e-01, 3.855305779687e-06, 1.5209e-01, 1.4639e-03, - 2DIAGNOSTIC, 66, -8.927667223683e-01, 3.713772440621e-06, 1.5398e-01, 1.8842e-03, - 2DIAGNOSTIC, 67, -8.927675504314e-01, 3.436916782590e-06, 1.5962e-01, 5.6379e-03, - 2DIAGNOSTIC, 68, -8.927675504079e-01, 3.171197053675e-06, 1.6508e-01, 5.4622e-03, - 2DIAGNOSTIC, 69, -8.927675504079e-01, 2.696636641902e-06, 1.6673e-01, 1.6470e-03, - 2DIAGNOSTIC, 70, -8.927675504079e-01, 2.052801239785e-06, 1.6837e-01, 1.6420e-03, - 2DIAGNOSTIC, 71, -8.927675504079e-01, 1.331741010581e-06, 1.7000e-01, 1.6279e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.946980164054e-01, 1.797693134862e+308, 2.1809e-01, 4.8098e-02, - 2DIAGNOSTIC, 2, -4.948218175516e-01, 1.797693134862e+308, 2.2073e-01, 2.6379e-03, - 2DIAGNOSTIC, 3, -4.966974867493e-01, 1.797693134862e+308, 2.2334e-01, 2.6069e-03, - 2DIAGNOSTIC, 4, -4.991925776321e-01, 1.797693134862e+308, 2.2578e-01, 2.4412e-03, - 2DIAGNOSTIC, 5, -5.014331916799e-01, 1.797693134862e+308, 2.2803e-01, 2.2480e-03, - 2DIAGNOSTIC, 6, -5.039437810843e-01, 1.797693134862e+308, 2.3037e-01, 2.3451e-03, - 2DIAGNOSTIC, 7, -5.062235925495e-01, 1.797693134862e+308, 2.3293e-01, 2.5549e-03, - 2DIAGNOSTIC, 8, -5.073668957446e-01, 1.797693134862e+308, 2.3540e-01, 2.4760e-03, - 2DIAGNOSTIC, 9, -5.138498615810e-01, 1.797693134862e+308, 2.3748e-01, 2.0719e-03, - 2DIAGNOSTIC, 10, -5.179144851382e-01, 2.882847561547e-03, 2.4014e-01, 2.6641e-03, - 2DIAGNOSTIC, 11, -5.219432213287e-01, 3.024676094144e-03, 2.4270e-01, 2.5630e-03, - 2DIAGNOSTIC, 12, -5.250998929570e-01, 3.023729107267e-03, 2.4537e-01, 2.6679e-03, - 2DIAGNOSTIC, 13, -5.315477961373e-01, 3.104504457356e-03, 2.4843e-01, 3.0560e-03, - 2DIAGNOSTIC, 14, -5.325125890629e-01, 3.021392606594e-03, 2.5110e-01, 2.6741e-03, - 2DIAGNOSTIC, 15, -5.345781683933e-01, 2.832371643797e-03, 2.5346e-01, 2.3599e-03, - 2DIAGNOSTIC, 16, -5.610087346126e-01, 3.399818189311e-03, 2.5613e-01, 2.6700e-03, - 2DIAGNOSTIC, 17, -5.848277104311e-01, 4.391919975504e-03, 2.5838e-01, 2.2521e-03, - 2DIAGNOSTIC, 18, -5.959651331131e-01, 5.206819321582e-03, 2.6067e-01, 2.2860e-03, - 2DIAGNOSTIC, 19, -6.382271932105e-01, 6.809332145170e-03, 2.6322e-01, 2.5530e-03, - 2DIAGNOSTIC, 20, -6.718234489915e-01, 8.546821818815e-03, 2.6698e-01, 3.7580e-03, - 2DIAGNOSTIC, 21, -6.728594684525e-01, 9.398186697853e-03, 2.6931e-01, 2.3301e-03, - 2DIAGNOSTIC, 22, -6.779280078271e-01, 9.485304360850e-03, 2.7203e-01, 2.7211e-03, - 2DIAGNOSTIC, 23, -6.795637399926e-01, 8.872744822459e-03, 2.7548e-01, 3.4471e-03, - 2DIAGNOSTIC, 24, -6.814772057085e-01, 7.553752761075e-03, 2.7786e-01, 2.3792e-03, - 2DIAGNOSTIC, 25, -6.826525097566e-01, 5.704126839282e-03, 2.8024e-01, 2.3799e-03, - 2DIAGNOSTIC, 26, -6.831945960754e-01, 4.010234594578e-03, 2.8262e-01, 2.3808e-03, - 2DIAGNOSTIC, 27, -6.837959082801e-01, 2.551056766508e-03, 2.8527e-01, 2.6569e-03, - 2DIAGNOSTIC, 28, -6.845687319589e-01, 1.170858392670e-03, 2.8915e-01, 3.8719e-03, - 2DIAGNOSTIC, 29, -6.848640554020e-01, 4.947036487454e-04, 2.9175e-01, 2.6088e-03, - 2DIAGNOSTIC, 30, -6.856527376657e-01, 3.824264978246e-04, 2.9404e-01, 2.2879e-03, - 2DIAGNOSTIC, 31, -6.859903179563e-01, 2.622931744999e-04, 2.9634e-01, 2.2950e-03, - 2DIAGNOSTIC, 32, -6.868199164897e-01, 2.146097367240e-04, 2.9860e-01, 2.2600e-03, - 2DIAGNOSTIC, 33, -6.874096116070e-01, 1.815680526339e-04, 3.0109e-01, 2.4910e-03, - 2DIAGNOSTIC, 34, -6.878325770021e-01, 1.660075965203e-04, 3.0331e-01, 2.2168e-03, - 2DIAGNOSTIC, 35, -6.891813109908e-01, 1.699954418388e-04, 3.0587e-01, 2.5659e-03, - 2DIAGNOSTIC, 36, -6.899824412346e-01, 1.748253270600e-04, 3.0874e-01, 2.8679e-03, - 2DIAGNOSTIC, 37, -6.909652688302e-01, 1.827080578204e-04, 3.1253e-01, 3.7920e-03, - 2DIAGNOSTIC, 38, -6.912307473043e-01, 1.856137995538e-04, 3.1481e-01, 2.2831e-03, - 2DIAGNOSTIC, 39, -6.917342259870e-01, 1.803423488636e-04, 3.1736e-01, 2.5420e-03, - 2DIAGNOSTIC, 40, -6.919403962313e-01, 1.697358140679e-04, 3.1961e-01, 2.2509e-03, - 2DIAGNOSTIC, 41, -6.920520358236e-01, 1.484200924445e-04, 3.2188e-01, 2.2719e-03, - 2DIAGNOSTIC, 42, -6.921573521234e-01, 1.244567867472e-04, 3.2438e-01, 2.5010e-03, - 2DIAGNOSTIC, 43, -6.921180783143e-01, 9.596306472745e-05, 3.2721e-01, 2.8279e-03, - 2DIAGNOSTIC, 44, -6.922631819417e-01, 6.558382018308e-05, 3.2971e-01, 2.5029e-03, - 2DIAGNOSTIC, 45, -6.922265854963e-01, 4.373985077608e-05, 3.3217e-01, 2.4619e-03, - 2DIAGNOSTIC, 46, -6.923929076040e-01, 2.829319272712e-05, 3.3495e-01, 2.7769e-03, - 2DIAGNOSTIC, 47, -6.925597885142e-01, 2.207484194500e-05, 3.3748e-01, 2.5320e-03, - 2DIAGNOSTIC, 48, -6.926991235164e-01, 1.781291521458e-05, 3.4004e-01, 2.5601e-03, - 2DIAGNOSTIC, 49, -6.927011012654e-01, 1.675433444278e-05, 3.4228e-01, 2.2428e-03, - 2DIAGNOSTIC, 50, -6.927054328359e-01, 1.612687429716e-05, 3.4453e-01, 2.2449e-03, - 2DIAGNOSTIC, 51, -6.927184334538e-01, 1.513533883086e-05, 3.4679e-01, 2.2619e-03, - 2DIAGNOSTIC, 52, -6.927389360661e-01, 1.387705229628e-05, 3.4929e-01, 2.5001e-03, - 2DIAGNOSTIC, 53, -6.925765179536e-01, 9.647765884913e-06, 3.5182e-01, 2.5260e-03, - 2DIAGNOSTIC, 54, -6.925930188959e-01, 6.159884648492e-06, 3.5525e-01, 3.4349e-03, - 2DIAGNOSTIC, 55, -6.925952263208e-01, 1.979329246959e-06, 3.5839e-01, 3.1419e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.144261271083e-01, 1.797693134862e+308, 4.2616e-01, 6.7766e-02, - 2DIAGNOSTIC, 2, -5.150509282021e-01, 1.797693134862e+308, 4.3786e-01, 1.1703e-02, - 2DIAGNOSTIC, 3, -5.155138840630e-01, 1.797693134862e+308, 4.4998e-01, 1.2116e-02, - 2DIAGNOSTIC, 4, -5.158069279104e-01, 1.797693134862e+308, 4.6196e-01, 1.1978e-02, - 2DIAGNOSTIC, 5, -5.160408551768e-01, 1.797693134862e+308, 4.7419e-01, 1.2231e-02, - 2DIAGNOSTIC, 6, -5.164112460529e-01, 1.797693134862e+308, 4.8627e-01, 1.2084e-02, - 2DIAGNOSTIC, 7, -5.166885426179e-01, 1.797693134862e+308, 4.9828e-01, 1.2004e-02, - 2DIAGNOSTIC, 8, -5.171335163936e-01, 1.797693134862e+308, 5.1623e-01, 1.7956e-02, - 2DIAGNOSTIC, 9, -5.172777552214e-01, 1.797693134862e+308, 5.2932e-01, 1.3090e-02, - 2DIAGNOSTIC, 10, -5.174823517470e-01, 3.672129414739e-04, 5.4696e-01, 1.7640e-02, - 2DIAGNOSTIC, 11, -5.174679487938e-01, 2.894036414993e-04, 5.5857e-01, 1.1605e-02, - 2DIAGNOSTIC, 12, -5.178703913357e-01, 2.456146634642e-04, 5.7005e-01, 1.1484e-02, - 2DIAGNOSTIC, 13, -5.184394823729e-01, 2.295892557631e-04, 5.8191e-01, 1.1858e-02, - 2DIAGNOSTIC, 14, -5.186627542358e-01, 2.149534720700e-04, 5.9370e-01, 1.1787e-02, - 2DIAGNOSTIC, 15, -5.187210115058e-01, 1.936867763759e-04, 6.0587e-01, 1.2175e-02, - 2DIAGNOSTIC, 16, -5.188280960266e-01, 1.742038678752e-04, 6.1781e-01, 1.1934e-02, - 2DIAGNOSTIC, 17, -5.190746284766e-01, 1.576072356035e-04, 6.3677e-01, 1.8961e-02, - 2DIAGNOSTIC, 18, -5.191897314187e-01, 1.450038018276e-04, 6.5058e-01, 1.3818e-02, - 2DIAGNOSTIC, 19, -5.191876017719e-01, 1.244499469397e-04, 6.6302e-01, 1.2436e-02, - 2DIAGNOSTIC, 20, -5.192412918798e-01, 1.021337283962e-04, 6.7556e-01, 1.2537e-02, - 2DIAGNOSTIC, 21, -5.192513744405e-01, 7.237646242896e-05, 6.8947e-01, 1.3909e-02, - 2DIAGNOSTIC, 22, -5.192580234895e-01, 4.849577979510e-05, 7.0209e-01, 1.2621e-02, - 2DIAGNOSTIC, 23, -5.192715180317e-01, 3.606023187958e-05, 7.1391e-01, 1.1827e-02, - 2DIAGNOSTIC, 24, -5.192995890182e-01, 2.722949107158e-05, 7.2574e-01, 1.1826e-02, - 2DIAGNOSTIC, 25, -5.194095437798e-01, 2.037519723604e-05, 7.4220e-01, 1.6457e-02, - 2DIAGNOSTIC, 26, -5.194616184216e-01, 1.542943321122e-05, 7.6649e-01, 2.4293e-02, - 2DIAGNOSTIC, 27, -5.194615075635e-01, 1.447384713614e-05, 7.7794e-01, 1.1452e-02, - 2DIAGNOSTIC, 28, -5.194654032477e-01, 1.472255544525e-05, 7.9097e-01, 1.3024e-02, - 2DIAGNOSTIC, 29, -5.194664824125e-01, 1.362287116023e-05, 8.0286e-01, 1.1898e-02, - 2DIAGNOSTIC, 30, -5.194664670864e-01, 1.235524886949e-05, 8.1695e-01, 1.4083e-02, - 2DIAGNOSTIC, 31, -5.194751350140e-01, 1.041869985909e-05, 8.2982e-01, 1.2873e-02, - 2DIAGNOSTIC, 32, -5.194660507249e-01, 7.694442274817e-06, 8.4289e-01, 1.3068e-02, - 2DIAGNOSTIC, 33, -5.194616361130e-01, 4.679018437599e-06, 8.5549e-01, 1.2600e-02, - 2DIAGNOSTIC, 34, -5.194566372209e-01, 1.822341662600e-06, 8.6627e-01, 1.0780e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.368545036184e-01, 1.797693134862e+308, 1.0392e+00, 1.7293e-01, - Elapsed time (stage 0): 1.0673e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -1.013724298002e+00, 1.797693134862e+308, 3.7987e-02, 3.7986e-02, - 2DIAGNOSTIC, 2, -1.015775295984e+00, 1.797693134862e+308, 3.9781e-02, 1.7939e-03, - 2DIAGNOSTIC, 3, -1.016168027128e+00, 1.797693134862e+308, 4.1340e-02, 1.5590e-03, - 2DIAGNOSTIC, 4, -1.018926251741e+00, 1.797693134862e+308, 4.3250e-02, 1.9100e-03, - 2DIAGNOSTIC, 5, -1.020182260790e+00, 1.797693134862e+308, 4.4846e-02, 1.5960e-03, - 2DIAGNOSTIC, 6, -1.022278908320e+00, 1.797693134862e+308, 4.6828e-02, 1.9820e-03, - 2DIAGNOSTIC, 7, -1.027683171516e+00, 1.797693134862e+308, 4.8374e-02, 1.5461e-03, - 2DIAGNOSTIC, 8, -1.043017015272e+00, 1.797693134862e+308, 5.0021e-02, 1.6470e-03, - 2DIAGNOSTIC, 9, -1.049157440297e+00, 1.797693134862e+308, 5.1376e-02, 1.3552e-03, - 2DIAGNOSTIC, 10, -1.049785740728e+00, 2.451019280352e-03, 5.3697e-02, 2.3210e-03, - 2DIAGNOSTIC, 11, -1.051943085482e+00, 2.469403040470e-03, 5.5553e-02, 1.8561e-03, - 2DIAGNOSTIC, 12, -1.054372879046e+00, 2.364730377966e-03, 5.7131e-02, 1.5779e-03, - 2DIAGNOSTIC, 13, -1.053224599549e+00, 2.040044087424e-03, 5.8645e-02, 1.5140e-03, - 2DIAGNOSTIC, 14, -1.055848299200e+00, 1.683220368469e-03, 5.9929e-02, 1.2841e-03, - 2DIAGNOSTIC, 15, -1.055564597483e+00, 1.242402619931e-03, 6.1432e-02, 1.5030e-03, - 2DIAGNOSTIC, 16, -1.061820403724e+00, 8.884356027832e-04, 6.3156e-02, 1.7240e-03, - 2DIAGNOSTIC, 17, -1.062579521016e+00, 5.859312476220e-04, 6.4638e-02, 1.4820e-03, - 2DIAGNOSTIC, 18, -1.064484064190e+00, 5.240383349728e-04, 6.6203e-02, 1.5652e-03, - 2DIAGNOSTIC, 19, -1.064209970386e+00, 5.056110398932e-04, 6.7503e-02, 1.2999e-03, - 2DIAGNOSTIC, 20, -1.065531923926e+00, 4.683214796623e-04, 6.9172e-02, 1.6692e-03, - 2DIAGNOSTIC, 21, -1.067049136098e+00, 4.367611006035e-04, 7.0657e-02, 1.4851e-03, - 2DIAGNOSTIC, 22, -1.067013062162e+00, 3.969211578365e-04, 7.1931e-02, 1.2739e-03, - 2DIAGNOSTIC, 23, -1.065422534811e+00, 2.916831614816e-04, 7.3226e-02, 1.2951e-03, - 2DIAGNOSTIC, 24, -1.066750161711e+00, 2.146417365354e-04, 7.4837e-02, 1.6110e-03, - 2DIAGNOSTIC, 25, -1.066717644289e+00, 1.180013913210e-04, 7.6375e-02, 1.5371e-03, - 2DIAGNOSTIC, 26, -1.067189598410e+00, 8.763458051438e-05, 7.8714e-02, 2.3398e-03, - 2DIAGNOSTIC, 27, -1.067228876678e+00, 5.915378033363e-05, 8.0019e-02, 1.3051e-03, - 2DIAGNOSTIC, 28, -1.067516702421e+00, 4.919040989945e-05, 8.1354e-02, 1.3349e-03, - 2DIAGNOSTIC, 29, -1.067892041427e+00, 3.599400976021e-05, 8.2701e-02, 1.3471e-03, - 2DIAGNOSTIC, 30, -1.069394734728e+00, 4.510236643151e-05, 8.4005e-02, 1.3039e-03, - 2DIAGNOSTIC, 31, -1.069691477710e+00, 6.492473631779e-05, 8.5357e-02, 1.3521e-03, - 2DIAGNOSTIC, 32, -1.071709144366e+00, 9.477279122778e-05, 8.6731e-02, 1.3740e-03, - 2DIAGNOSTIC, 33, -1.073162992340e+00, 1.122218616690e-04, 8.8690e-02, 1.9581e-03, - 2DIAGNOSTIC, 34, -1.073263495385e+00, 1.292546851143e-04, 9.0193e-02, 1.5030e-03, - 2DIAGNOSTIC, 35, -1.073384564614e+00, 1.338802361367e-04, 9.1989e-02, 1.7960e-03, - 2DIAGNOSTIC, 36, -1.073611631618e+00, 1.309250498759e-04, 9.3767e-02, 1.7788e-03, - 2DIAGNOSTIC, 37, -1.074029260801e+00, 1.189187225662e-04, 9.6313e-02, 2.5461e-03, - 2DIAGNOSTIC, 38, -1.073746569669e+00, 9.615995774511e-05, 9.8089e-02, 1.7760e-03, - 2DIAGNOSTIC, 39, -1.074065811878e+00, 7.031721584011e-05, 9.9484e-02, 1.3950e-03, - 2DIAGNOSTIC, 40, -1.074556549266e+00, 5.277154037558e-05, 1.0191e-01, 2.4271e-03, - 2DIAGNOSTIC, 41, -1.074599474949e+00, 3.297704984522e-05, 1.0323e-01, 1.3218e-03, - 2DIAGNOSTIC, 42, -1.074782158051e+00, 2.491969260456e-05, 1.0457e-01, 1.3402e-03, - 2DIAGNOSTIC, 43, -1.074934671880e+00, 2.501905241960e-05, 1.0594e-01, 1.3671e-03, - 2DIAGNOSTIC, 44, -1.075057172071e+00, 2.414629249554e-05, 1.0728e-01, 1.3349e-03, - 2DIAGNOSTIC, 45, -1.075276970721e+00, 2.302176237123e-05, 1.0903e-01, 1.7540e-03, - 2DIAGNOSTIC, 46, -1.075434967774e+00, 2.196760309358e-05, 1.1081e-01, 1.7788e-03, - 2DIAGNOSTIC, 47, -1.075512890166e+00, 2.184502267267e-05, 1.1213e-01, 1.3242e-03, - 2DIAGNOSTIC, 48, -1.075670870508e+00, 1.898818320664e-05, 1.1367e-01, 1.5371e-03, - 2DIAGNOSTIC, 49, -1.075807260038e+00, 1.690564809301e-05, 1.1548e-01, 1.8120e-03, - 2DIAGNOSTIC, 50, -1.075854899474e+00, 1.622555043670e-05, 1.1687e-01, 1.3850e-03, - 2DIAGNOSTIC, 51, -1.075921891790e+00, 1.464401159804e-05, 1.1842e-01, 1.5490e-03, - 2DIAGNOSTIC, 52, -1.075947444849e+00, 1.284817504392e-05, 1.1976e-01, 1.3418e-03, - 2DIAGNOSTIC, 53, -1.075986806688e+00, 1.091272791772e-05, 1.2109e-01, 1.3289e-03, - 2DIAGNOSTIC, 54, -1.076036343985e+00, 8.884453055177e-06, 1.2267e-01, 1.5850e-03, - 2DIAGNOSTIC, 55, -1.076100085580e+00, 7.499886907146e-06, 1.2463e-01, 1.9600e-03, - 2DIAGNOSTIC, 56, -1.076144101138e+00, 6.466200909924e-06, 1.2662e-01, 1.9860e-03, - 2DIAGNOSTIC, 57, -1.076146736616e+00, 5.269071470491e-06, 1.2794e-01, 1.3201e-03, - 2DIAGNOSTIC, 58, -1.076168325044e+00, 4.481925917177e-06, 1.2948e-01, 1.5399e-03, - 2DIAGNOSTIC, 59, -1.076174600559e+00, 3.985333033831e-06, 1.3080e-01, 1.3180e-03, - 2DIAGNOSTIC, 60, -1.076191588714e+00, 3.452577721923e-06, 1.3210e-01, 1.3020e-03, - 2DIAGNOSTIC, 61, -1.076236031094e+00, 3.143113765747e-06, 1.3408e-01, 1.9820e-03, - 2DIAGNOSTIC, 62, -1.076238345885e+00, 2.709012107895e-06, 1.3542e-01, 1.3430e-03, - 2DIAGNOSTIC, 63, -1.076244880591e+00, 2.274508386767e-06, 1.3677e-01, 1.3521e-03, - 2DIAGNOSTIC, 64, -1.076257903523e+00, 1.941165879333e-06, 1.3813e-01, 1.3599e-03, - 2DIAGNOSTIC, 65, -1.076288740692e+00, 1.861704847960e-06, 1.3946e-01, 1.3289e-03, - 2DIAGNOSTIC, 66, -1.076317443953e+00, 1.942605435651e-06, 1.4099e-01, 1.5230e-03, - 2DIAGNOSTIC, 67, -1.076330116272e+00, 1.938947553532e-06, 1.4322e-01, 2.2290e-03, - 2DIAGNOSTIC, 68, -1.076348109521e+00, 1.954401555669e-06, 1.4475e-01, 1.5349e-03, - 2DIAGNOSTIC, 69, -1.076349868929e+00, 1.857047967936e-06, 1.4609e-01, 1.3380e-03, - 2DIAGNOSTIC, 70, -1.076373840848e+00, 1.779056667107e-06, 1.4763e-01, 1.5411e-03, - 2DIAGNOSTIC, 71, -1.076376980397e+00, 1.751871115157e-06, 1.4918e-01, 1.5481e-03, - 2DIAGNOSTIC, 72, -1.076387926171e+00, 1.650446079823e-06, 1.5094e-01, 1.7672e-03, - 2DIAGNOSTIC, 73, -1.076411903706e+00, 1.547999990499e-06, 1.5333e-01, 2.3890e-03, - 2DIAGNOSTIC, 74, -1.076411915225e+00, 1.384771581212e-06, 1.5832e-01, 4.9870e-03, - 2DIAGNOSTIC, 75, -1.076411915223e+00, 1.242682677479e-06, 1.6306e-01, 4.7400e-03, - 2DIAGNOSTIC, 76, -1.076411915223e+00, 1.126796907037e-06, 1.6489e-01, 1.8289e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.328863258573e-01, 1.797693134862e+308, 2.0996e-01, 4.5075e-02, - 2DIAGNOSTIC, 2, -7.329815607166e-01, 1.797693134862e+308, 2.1270e-01, 2.7320e-03, - 2DIAGNOSTIC, 3, -7.342078031124e-01, 1.797693134862e+308, 2.1550e-01, 2.8009e-03, - 2DIAGNOSTIC, 4, -7.364817494778e-01, 1.797693134862e+308, 2.1822e-01, 2.7189e-03, - 2DIAGNOSTIC, 5, -7.414325511723e-01, 1.797693134862e+308, 2.2055e-01, 2.3370e-03, - 2DIAGNOSTIC, 6, -7.460986641043e-01, 1.797693134862e+308, 2.2308e-01, 2.5289e-03, - 2DIAGNOSTIC, 7, -7.539047985728e-01, 1.797693134862e+308, 2.2566e-01, 2.5749e-03, - 2DIAGNOSTIC, 8, -7.570476529005e-01, 1.797693134862e+308, 2.2889e-01, 3.2289e-03, - 2DIAGNOSTIC, 9, -7.608314036576e-01, 1.797693134862e+308, 2.3266e-01, 3.7730e-03, - 2DIAGNOSTIC, 10, -7.632695556997e-01, 3.038162250908e-03, 2.3748e-01, 4.8180e-03, - 2DIAGNOSTIC, 11, -7.629549857259e-01, 2.804120507655e-03, 2.4050e-01, 3.0239e-03, - 2DIAGNOSTIC, 12, -7.630058220065e-01, 2.364080835103e-03, 2.4382e-01, 3.3200e-03, - 2DIAGNOSTIC, 13, -7.631727403982e-01, 1.820860877502e-03, 2.4661e-01, 2.7931e-03, - 2DIAGNOSTIC, 14, -7.634144958199e-01, 1.258141197036e-03, 2.4898e-01, 2.3699e-03, - 2DIAGNOSTIC, 15, -7.638885805207e-01, 7.926348418362e-04, 2.5174e-01, 2.7530e-03, - 2DIAGNOSTIC, 16, -7.641108309922e-01, 4.259578580211e-04, 2.5455e-01, 2.8119e-03, - 2DIAGNOSTIC, 17, -7.640001646163e-01, 2.348355140635e-04, 2.5741e-01, 2.8658e-03, - 2DIAGNOSTIC, 18, -7.640723372869e-01, 1.095194017654e-04, 2.5989e-01, 2.4710e-03, - 2DIAGNOSTIC, 19, -7.642146941169e-01, 6.387658714525e-05, 2.6230e-01, 2.4190e-03, - 2DIAGNOSTIC, 20, -7.644366526106e-01, 6.711540264148e-05, 2.6507e-01, 2.7659e-03, - 2DIAGNOSTIC, 21, -7.646755828662e-01, 6.251395787703e-05, 2.6877e-01, 3.6950e-03, - 2DIAGNOSTIC, 22, -7.647060379652e-01, 5.411650497995e-05, 2.7155e-01, 2.7831e-03, - 2DIAGNOSTIC, 23, -7.646503538002e-01, 4.346119170921e-05, 2.7407e-01, 2.5210e-03, - 2DIAGNOSTIC, 24, -7.646069068294e-01, 3.270445383348e-05, 2.7658e-01, 2.5101e-03, - 2DIAGNOSTIC, 25, -7.645831490018e-01, 2.647816612564e-05, 2.7939e-01, 2.8141e-03, - 2DIAGNOSTIC, 26, -7.645581340038e-01, 2.122407287364e-05, 2.8189e-01, 2.4970e-03, - 2DIAGNOSTIC, 27, -7.644881587129e-01, 1.199501659690e-05, 2.8439e-01, 2.4998e-03, - 2DIAGNOSTIC, 28, -7.646099014260e-01, 5.074432669797e-06, 2.8721e-01, 2.8229e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.648743508511e-01, 1.797693134862e+308, 3.5644e-01, 6.9231e-02, - 2DIAGNOSTIC, 2, -5.653416322953e-01, 1.797693134862e+308, 3.7029e-01, 1.3847e-02, - 2DIAGNOSTIC, 3, -5.662737479961e-01, 1.797693134862e+308, 3.8481e-01, 1.4520e-02, - 2DIAGNOSTIC, 4, -5.675337565031e-01, 1.797693134862e+308, 3.9871e-01, 1.3903e-02, - 2DIAGNOSTIC, 5, -5.688814744524e-01, 1.797693134862e+308, 4.1300e-01, 1.4287e-02, - 2DIAGNOSTIC, 6, -5.700539090923e-01, 1.797693134862e+308, 4.2677e-01, 1.3773e-02, - 2DIAGNOSTIC, 7, -5.715044129164e-01, 1.797693134862e+308, 4.4029e-01, 1.3514e-02, - 2DIAGNOSTIC, 8, -5.731318561833e-01, 1.797693134862e+308, 4.5566e-01, 1.5369e-02, - 2DIAGNOSTIC, 9, -5.746236038625e-01, 1.797693134862e+308, 4.7425e-01, 1.8592e-02, - 2DIAGNOSTIC, 10, -5.751889673719e-01, 1.264548737175e-03, 4.8962e-01, 1.5374e-02, - 2DIAGNOSTIC, 11, -5.753229458283e-01, 1.134329522536e-03, 5.0258e-01, 1.2955e-02, - 2DIAGNOSTIC, 12, -5.757467377519e-01, 9.616532064344e-04, 5.1464e-01, 1.2065e-02, - 2DIAGNOSTIC, 13, -5.760173578845e-01, 7.736909815175e-04, 5.2658e-01, 1.1932e-02, - 2DIAGNOSTIC, 14, -5.766310705642e-01, 6.080695556995e-04, 5.4222e-01, 1.5645e-02, - 2DIAGNOSTIC, 15, -5.772327381139e-01, 4.735820060375e-04, 5.6124e-01, 1.9019e-02, - 2DIAGNOSTIC, 16, -5.773186555178e-01, 3.516238874922e-04, 5.7513e-01, 1.3895e-02, - 2DIAGNOSTIC, 17, -5.774910203307e-01, 2.589586583963e-04, 5.8827e-01, 1.3139e-02, - 2DIAGNOSTIC, 18, -5.775878937144e-01, 1.994630854135e-04, 6.0232e-01, 1.4051e-02, - 2DIAGNOSTIC, 19, -5.776698618717e-01, 1.685071063479e-04, 6.1782e-01, 1.5495e-02, - 2DIAGNOSTIC, 20, -5.776918582347e-01, 1.395980384521e-04, 6.3028e-01, 1.2463e-02, - 2DIAGNOSTIC, 21, -5.777284349428e-01, 1.046052637444e-04, 6.4375e-01, 1.3464e-02, - 2DIAGNOSTIC, 22, -5.777870775487e-01, 7.420209395470e-05, 6.5872e-01, 1.4969e-02, - 2DIAGNOSTIC, 23, -5.778060191423e-01, 4.562392591054e-05, 6.7227e-01, 1.3556e-02, - 2DIAGNOSTIC, 24, -5.778109287932e-01, 2.776065774379e-05, 6.8937e-01, 1.7095e-02, - 2DIAGNOSTIC, 25, -5.778107763615e-01, 2.079185941393e-05, 7.0374e-01, 1.4377e-02, - 2DIAGNOSTIC, 26, -5.778119023172e-01, 1.412749816773e-05, 7.1839e-01, 1.4651e-02, - 2DIAGNOSTIC, 27, -5.778024301591e-01, 9.682620866480e-06, 7.3090e-01, 1.2509e-02, - 2DIAGNOSTIC, 28, -5.778070308325e-01, 6.517056521882e-06, 7.4340e-01, 1.2494e-02, - 2DIAGNOSTIC, 29, -5.778117765752e-01, 4.548804181770e-06, 7.5727e-01, 1.3870e-02, - 2DIAGNOSTIC, 30, -5.778199061980e-01, 2.878455194269e-06, 7.7100e-01, 1.3729e-02, - 2DIAGNOSTIC, 31, -5.778221279865e-01, 1.740368988923e-06, 7.8466e-01, 1.3660e-02, - 2DIAGNOSTIC, 32, -5.778279782594e-01, 1.599111283071e-06, 7.9866e-01, 1.4006e-02, - 2DIAGNOSTIC, 33, -5.778329393263e-01, 1.764625684776e-06, 8.1427e-01, 1.5606e-02, - 2DIAGNOSTIC, 34, -5.778357460106e-01, 1.952578754204e-06, 8.2975e-01, 1.5479e-02, - 2DIAGNOSTIC, 35, -5.778298402018e-01, 1.945759078345e-06, 8.4487e-01, 1.5127e-02, - 2DIAGNOSTIC, 36, -5.778321559000e-01, 1.896547733318e-06, 8.5916e-01, 1.4288e-02, - 2DIAGNOSTIC, 37, -5.778351217897e-01, 1.664995054225e-06, 8.7318e-01, 1.4017e-02, - 2DIAGNOSTIC, 38, -5.778353408641e-01, 1.428461901033e-06, 8.8713e-01, 1.3945e-02, - 2DIAGNOSTIC, 39, -5.778370798926e-01, 1.229091118039e-06, 8.9883e-01, 1.1706e-02, - 2DIAGNOSTIC, 40, -5.778411680649e-01, 1.153532255410e-06, 9.1333e-01, 1.4500e-02, - 2DIAGNOSTIC, 41, -5.778470730363e-01, 1.143451666422e-06, 9.2812e-01, 1.4789e-02, - 2DIAGNOSTIC, 42, -5.778460004021e-01, 1.151022759709e-06, 9.4008e-01, 1.1962e-02, - 2DIAGNOSTIC, 43, -5.778460281557e-01, 1.178561892291e-06, 9.5148e-01, 1.1394e-02, - 2DIAGNOSTIC, 44, -5.778475257522e-01, 1.214622047985e-06, 9.6569e-01, 1.4218e-02, - 2DIAGNOSTIC, 45, -5.778495103763e-01, 1.157266017328e-06, 9.7840e-01, 1.2704e-02, - 2DIAGNOSTIC, 46, -5.778510914472e-01, 1.099185972901e-06, 9.9264e-01, 1.4240e-02, - 2DIAGNOSTIC, 47, -5.778489715549e-01, 1.014516566051e-06, 1.0046e+00, 1.1961e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.792735129524e-01, 1.797693134862e+308, 1.2205e+00, 2.1588e-01, - Elapsed time (stage 1): 1.2470e+00 - - -Total elapsed time: 2.3155e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:17:54 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 46 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 82 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 86.84% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 86.84% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[ 8934 5820 5799 7659 28260 752 2228 438 1260 3249 6027 475 - 167 1602 630 944 0 318 523 225 219 513 165 0 - 0 0 0 255 397 172 0 0 0 0 0 0 - 0 0 0 0 170 0 0 0 0 0] -[131784 66882 64509 73900 15070 16063 20060 13873 10856 9401 - 4464 7685 5278 1752 1252 1750 4283 3698 2873 1689 - 951 1425 930 1550 880 1012 1013 792 274 1000 - 741 523 741 568 217 460 898 235 418 296 - 284 0 302 243 218 280] -[ 446 2355 9145 0 0 170 6218 169 0 12848 0 0 - 305 0 0 0 0 8459 0 14913 0 0 6590 12328 - 0 0 0 0 928 0 0 188 0 0 0 0 - 1913 0 933 14343 9360 0 160 408 6695 0] -[ 6215 417 249 10607 572 12306 64056 5002 296 321 - 383 979 5330 1114 1046 862 574 257 3397 0 - 1106 7558 129483 419 681 5607 536 4698 199 1415 - 215 523 813 1389 2390 646 4246 2263 379 0 - 659 653 5278 6284 131509 182] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:26:43 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:26:48 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:36 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:36 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:36 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:47 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:30:50 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC004 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:31:09 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:31:34 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:33:27 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:33:28 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:34:49 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:34:50 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5559f8ab5d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [79.0448, 118.61, -131.164] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5559f892c730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff7103e7010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5559f8ab9020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 62.5211, -112.819] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5559f8abf0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff70cd28010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5559f8acf840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [79.0448, 118.61, -131.164] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5559f8abb890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff708054010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5559f8ad33e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 62.5211, -112.819] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5559f8ac2130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff704995010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.807379915493e-01, 1.797693134862e+308, 2.3899e-01, 2.3899e-01, - 2DIAGNOSTIC, 2, -4.815266954157e-01, 1.797693134862e+308, 2.4046e-01, 1.4701e-03, - 2DIAGNOSTIC, 3, -4.821339227115e-01, 1.797693134862e+308, 2.4165e-01, 1.1928e-03, - 2DIAGNOSTIC, 4, -4.830170680759e-01, 1.797693134862e+308, 2.4284e-01, 1.1899e-03, - 2DIAGNOSTIC, 5, -4.858775433987e-01, 1.797693134862e+308, 2.4406e-01, 1.2190e-03, - 2DIAGNOSTIC, 6, -4.895363242558e-01, 1.797693134862e+308, 2.4525e-01, 1.1880e-03, - 2DIAGNOSTIC, 7, -4.982011585430e-01, 1.797693134862e+308, 2.4645e-01, 1.2000e-03, - 2DIAGNOSTIC, 8, -5.238862107499e-01, 1.797693134862e+308, 2.4799e-01, 1.5421e-03, - 2DIAGNOSTIC, 9, -5.649691644749e-01, 1.797693134862e+308, 2.4948e-01, 1.4901e-03, - 2DIAGNOSTIC, 10, -5.664893690328e-01, 1.100049104185e-02, 2.5172e-01, 2.2390e-03, - 2DIAGNOSTIC, 11, -5.699001828958e-01, 1.206512064481e-02, 2.5346e-01, 1.7421e-03, - 2DIAGNOSTIC, 12, -5.706027565210e-01, 1.194676713604e-02, 2.5516e-01, 1.6940e-03, - 2DIAGNOSTIC, 13, -5.707869157661e-01, 1.079027937729e-02, 2.5710e-01, 1.9429e-03, - 2DIAGNOSTIC, 14, -5.706054203378e-01, 8.843457156028e-03, 2.5878e-01, 1.6770e-03, - 2DIAGNOSTIC, 15, -5.703210559325e-01, 6.476749244169e-03, 2.6049e-01, 1.7109e-03, - 2DIAGNOSTIC, 16, -5.704678358477e-01, 3.987821634729e-03, 2.6219e-01, 1.7021e-03, - 2DIAGNOSTIC, 17, -5.703277887240e-01, 1.707235288816e-03, 2.6370e-01, 1.5101e-03, - 2DIAGNOSTIC, 18, -5.694985388334e-01, 2.417941927226e-04, 2.6519e-01, 1.4889e-03, - 2DIAGNOSTIC, 19, -5.706054648020e-01, 9.595087669145e-05, 2.6758e-01, 2.3880e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.339909026909e-01, 1.797693134862e+308, 4.9017e-01, 2.2259e-01, - 2DIAGNOSTIC, 2, -4.331087955005e-01, 1.797693134862e+308, 4.9256e-01, 2.3901e-03, - 2DIAGNOSTIC, 3, -4.334454386530e-01, 1.797693134862e+308, 4.9462e-01, 2.0630e-03, - 2DIAGNOSTIC, 4, -4.344189393210e-01, 1.797693134862e+308, 4.9664e-01, 2.0111e-03, - 2DIAGNOSTIC, 5, -4.355659068742e-01, 1.797693134862e+308, 4.9856e-01, 1.9269e-03, - 2DIAGNOSTIC, 6, -4.377667340940e-01, 1.797693134862e+308, 5.0060e-01, 2.0368e-03, - 2DIAGNOSTIC, 7, -4.402527497761e-01, 1.797693134862e+308, 5.0310e-01, 2.5051e-03, - 2DIAGNOSTIC, 8, -4.534794925778e-01, 1.797693134862e+308, 5.0624e-01, 3.1371e-03, - 2DIAGNOSTIC, 9, -4.622809594802e-01, 1.797693134862e+308, 5.0921e-01, 2.9709e-03, - 2DIAGNOSTIC, 10, -4.651488430059e-01, 4.738231827103e-03, 5.1139e-01, 2.1808e-03, - 2DIAGNOSTIC, 11, -4.702899306256e-01, 5.409730401168e-03, 5.1389e-01, 2.4970e-03, - 2DIAGNOSTIC, 12, -4.734259148300e-01, 5.594528206120e-03, 5.1610e-01, 2.2130e-03, - 2DIAGNOSTIC, 13, -4.844463126783e-01, 5.776970359533e-03, 5.1898e-01, 2.8770e-03, - 2DIAGNOSTIC, 14, -4.865985350462e-01, 5.531547944114e-03, 5.2156e-01, 2.5809e-03, - 2DIAGNOSTIC, 15, -4.869476559740e-01, 4.889271610939e-03, 5.2379e-01, 2.2249e-03, - 2DIAGNOSTIC, 16, -4.874324938936e-01, 4.002638941521e-03, 5.2610e-01, 2.3170e-03, - 2DIAGNOSTIC, 17, -4.891424086495e-01, 3.000506333283e-03, 5.2938e-01, 3.2811e-03, - 2DIAGNOSTIC, 18, -4.933540154499e-01, 2.423723583742e-03, 5.3297e-01, 3.5889e-03, - 2DIAGNOSTIC, 19, -4.934159072800e-01, 1.969945658588e-03, 5.4146e-01, 8.4848e-03, - 2DIAGNOSTIC, 20, -4.934159050118e-01, 1.473861535994e-03, 5.4374e-01, 2.2819e-03, - 2DIAGNOSTIC, 21, -4.934159196712e-01, 1.044292941567e-03, 5.4602e-01, 2.2790e-03, - 2DIAGNOSTIC, 22, -4.934159444590e-01, 6.365075276910e-04, 5.4857e-01, 2.5501e-03, - 2DIAGNOSTIC, 23, -4.934159863715e-01, 4.943371149574e-04, 5.5172e-01, 3.1528e-03, - 2DIAGNOSTIC, 24, -4.934160572357e-01, 3.730164116547e-04, 5.5397e-01, 2.2490e-03, - 2DIAGNOSTIC, 25, -4.934161770400e-01, 2.373174554479e-04, 5.5622e-01, 2.2509e-03, - 2DIAGNOSTIC, 26, -4.934163795523e-01, 1.017173395103e-04, 5.5848e-01, 2.2590e-03, - 2DIAGNOSTIC, 27, -4.934167226030e-01, 2.645560794733e-06, 5.6073e-01, 2.2478e-03, - 2DIAGNOSTIC, 28, -4.934173022328e-01, 1.240695891865e-06, 5.6334e-01, 2.6159e-03, - 2DIAGNOSTIC, 29, -4.934182806417e-01, 1.232969348251e-06, 5.6582e-01, 2.4719e-03, - 2DIAGNOSTIC, 30, -4.934199299654e-01, 1.249864426067e-06, 5.6824e-01, 2.4261e-03, - 2DIAGNOSTIC, 31, -4.934227048230e-01, 1.305091078589e-06, 5.7058e-01, 2.3382e-03, - 2DIAGNOSTIC, 32, -4.934273233646e-01, 1.419982941536e-06, 5.7348e-01, 2.8992e-03, - 2DIAGNOSTIC, 33, -4.934350098855e-01, 1.629256570455e-06, 5.7650e-01, 3.0251e-03, - 2DIAGNOSTIC, 34, -4.934476971640e-01, 1.987493891478e-06, 5.7944e-01, 2.9371e-03, - 2DIAGNOSTIC, 35, -4.934684271069e-01, 2.579024008048e-06, 5.8202e-01, 2.5759e-03, - 2DIAGNOSTIC, 36, -4.935010397264e-01, 3.517503826992e-06, 5.8456e-01, 2.5420e-03, - 2DIAGNOSTIC, 37, -4.935495227085e-01, 4.931807289041e-06, 5.8711e-01, 2.5539e-03, - 2DIAGNOSTIC, 38, -4.936182657300e-01, 6.956021259049e-06, 5.8937e-01, 2.2559e-03, - 2DIAGNOSTIC, 39, -4.937956902332e-01, 1.099264714649e-05, 5.9252e-01, 3.1459e-03, - 2DIAGNOSTIC, 40, -4.938152986804e-01, 1.411169065110e-05, 5.9504e-01, 2.5260e-03, - 2DIAGNOSTIC, 41, -4.937434790776e-01, 1.483772573204e-05, 5.9777e-01, 2.7308e-03, - 2DIAGNOSTIC, 42, -4.936708458140e-01, 1.328918023955e-05, 5.9999e-01, 2.2190e-03, - 2DIAGNOSTIC, 43, -4.936074326863e-01, 9.852195472802e-06, 6.0220e-01, 2.2130e-03, - 2DIAGNOSTIC, 44, -4.936466831546e-01, 6.365859947462e-06, 6.0445e-01, 2.2478e-03, - 2DIAGNOSTIC, 45, -4.937952659951e-01, 4.686487777711e-06, 6.0706e-01, 2.6100e-03, - 2DIAGNOSTIC, 46, -4.938463490745e-01, 3.765007176700e-06, 6.0930e-01, 2.2402e-03, - 2DIAGNOSTIC, 47, -4.938454383650e-01, 3.229463386396e-06, 6.1188e-01, 2.5761e-03, - 2DIAGNOSTIC, 48, -4.939272190129e-01, 4.303741724856e-06, 6.1419e-01, 2.3119e-03, - 2DIAGNOSTIC, 49, -4.940491141450e-01, 8.528728673803e-06, 6.1649e-01, 2.2988e-03, - 2DIAGNOSTIC, 50, -4.940992638149e-01, 1.258838547840e-05, 6.1902e-01, 2.5289e-03, - 2DIAGNOSTIC, 51, -4.943046706061e-01, 1.690663408415e-05, 6.2123e-01, 2.2070e-03, - 2DIAGNOSTIC, 52, -4.943189838149e-01, 1.884479217831e-05, 6.2366e-01, 2.4359e-03, - 2DIAGNOSTIC, 53, -4.943431424008e-01, 1.855256905325e-05, 6.2644e-01, 2.7759e-03, - 2DIAGNOSTIC, 54, -4.943519731892e-01, 1.703732129996e-05, 6.2863e-01, 2.1908e-03, - 2DIAGNOSTIC, 55, -4.944045957300e-01, 1.613238717981e-05, 6.3111e-01, 2.4850e-03, - 2DIAGNOSTIC, 56, -4.943406966835e-01, 1.361569370612e-05, 6.3354e-01, 2.4281e-03, - 2DIAGNOSTIC, 57, -4.944148972666e-01, 1.070790110301e-05, 6.3627e-01, 2.7330e-03, - 2DIAGNOSTIC, 58, -4.945174281389e-01, 8.774924680141e-06, 6.3853e-01, 2.2581e-03, - 2DIAGNOSTIC, 59, -4.952091713510e-01, 1.419732458811e-05, 6.4139e-01, 2.8610e-03, - 2DIAGNOSTIC, 60, -4.949934638821e-01, 1.627433289197e-05, 6.4352e-01, 2.1310e-03, - 2DIAGNOSTIC, 61, -4.950211231929e-01, 1.917292464977e-05, 6.4568e-01, 2.1539e-03, - 2DIAGNOSTIC, 62, -4.956910638678e-01, 2.672156263011e-05, 6.4815e-01, 2.4769e-03, - 2DIAGNOSTIC, 63, -4.963400776732e-01, 3.751328153668e-05, 6.5064e-01, 2.4860e-03, - 2DIAGNOSTIC, 64, -4.966757660571e-01, 4.734947969612e-05, 6.5375e-01, 3.1090e-03, - 2DIAGNOSTIC, 65, -4.967255978946e-01, 5.342027555763e-05, 6.5628e-01, 2.5291e-03, - 2DIAGNOSTIC, 66, -4.966860852844e-01, 5.347887053991e-05, 6.5845e-01, 2.1670e-03, - 2DIAGNOSTIC, 67, -4.967796244677e-01, 4.985644448543e-05, 6.6059e-01, 2.1460e-03, - 2DIAGNOSTIC, 68, -4.970208192655e-01, 4.420912395264e-05, 6.6315e-01, 2.5561e-03, - 2DIAGNOSTIC, 69, -4.971210652095e-01, 4.125574373681e-05, 6.6630e-01, 3.1540e-03, - 2DIAGNOSTIC, 70, -4.978894668693e-01, 3.922186606856e-05, 6.6946e-01, 3.1629e-03, - 2DIAGNOSTIC, 71, -5.018426020917e-01, 6.610421376895e-05, 6.7318e-01, 3.7131e-03, - 2DIAGNOSTIC, 72, -5.094122792272e-01, 1.517794006756e-04, 6.7625e-01, 3.0699e-03, - 2DIAGNOSTIC, 73, -5.109564522756e-01, 2.365760093355e-04, 6.7901e-01, 2.7609e-03, - 2DIAGNOSTIC, 74, -5.122613616040e-01, 3.099578185659e-04, 6.8165e-01, 2.6410e-03, - 2DIAGNOSTIC, 75, -5.133815607370e-01, 3.611606879226e-04, 6.8497e-01, 3.3181e-03, - 2DIAGNOSTIC, 76, -5.135631008201e-01, 3.765676618888e-04, 6.8726e-01, 2.2931e-03, - 2DIAGNOSTIC, 77, -5.137665764782e-01, 3.566628807582e-04, 6.8989e-01, 2.6281e-03, - 2DIAGNOSTIC, 78, -5.140873280174e-01, 3.073044778650e-04, 6.9225e-01, 2.3639e-03, - 2DIAGNOSTIC, 79, -5.145707603291e-01, 2.347704125502e-04, 6.9492e-01, 2.6650e-03, - 2DIAGNOSTIC, 80, -5.150159374487e-01, 1.501330590854e-04, 6.9821e-01, 3.2930e-03, - 2DIAGNOSTIC, 81, -5.155773903275e-01, 8.426727267506e-05, 7.0148e-01, 3.2701e-03, - 2DIAGNOSTIC, 82, -5.156665804058e-01, 6.607092284218e-05, 7.0371e-01, 2.2249e-03, - 2DIAGNOSTIC, 83, -5.163403606581e-01, 5.736974218893e-05, 7.0621e-01, 2.5051e-03, - 2DIAGNOSTIC, 84, -5.166874190830e-01, 5.446023238862e-05, 7.0873e-01, 2.5179e-03, - 2DIAGNOSTIC, 85, -5.168483241624e-01, 5.506659250815e-05, 7.1105e-01, 2.3170e-03, - 2DIAGNOSTIC, 86, -5.173963874509e-01, 5.531952336187e-05, 7.1353e-01, 2.4800e-03, - 2DIAGNOSTIC, 87, -5.190689492074e-01, 6.266136056982e-05, 7.1642e-01, 2.8920e-03, - 2DIAGNOSTIC, 88, -5.271050654808e-01, 1.183495943397e-04, 7.2017e-01, 3.7472e-03, - 2DIAGNOSTIC, 89, -5.311351579565e-01, 1.891775488273e-04, 7.2281e-01, 2.6481e-03, - 2DIAGNOSTIC, 90, -5.348937975615e-01, 2.669803896447e-04, 7.2710e-01, 4.2858e-03, - 2DIAGNOSTIC, 91, -5.357848948436e-01, 3.267802521898e-04, 7.2975e-01, 2.6481e-03, - 2DIAGNOSTIC, 92, -5.371352590878e-01, 3.626952275561e-04, 7.3230e-01, 2.5549e-03, - 2DIAGNOSTIC, 93, -5.383950467304e-01, 3.739352539288e-04, 7.3488e-01, 2.5768e-03, - 2DIAGNOSTIC, 94, -5.393325453079e-01, 3.561041706062e-04, 7.3711e-01, 2.2280e-03, - 2DIAGNOSTIC, 95, -5.415284033885e-01, 3.188994771146e-04, 7.3948e-01, 2.3770e-03, - 2DIAGNOSTIC, 96, -5.432943269304e-01, 2.658491203567e-04, 7.4223e-01, 2.7440e-03, - 2DIAGNOSTIC, 97, -5.483999536928e-01, 2.273873427515e-04, 7.4571e-01, 3.4800e-03, - 2DIAGNOSTIC, 98, -5.497284367719e-01, 2.214965709415e-04, 7.4793e-01, 2.2268e-03, - 2DIAGNOSTIC, 99, -5.520991217463e-01, 2.309987565634e-04, 7.5069e-01, 2.7530e-03, - 2DIAGNOSTIC, 100, -5.576748498094e-01, 2.712214595292e-04, 7.5284e-01, 2.1501e-03, - 2DIAGNOSTIC, 101, -5.641292306950e-01, 3.247947208047e-04, 7.5592e-01, 3.0780e-03, - 2DIAGNOSTIC, 102, -5.663264185377e-01, 3.646618181350e-04, 7.5840e-01, 2.4869e-03, - 2DIAGNOSTIC, 103, -5.677891073619e-01, 3.838903346745e-04, 7.6112e-01, 2.7130e-03, - 2DIAGNOSTIC, 104, -5.691862380006e-01, 3.786881320376e-04, 7.6345e-01, 2.3351e-03, - 2DIAGNOSTIC, 105, -5.823897462860e-01, 4.196246240173e-04, 7.6579e-01, 2.3391e-03, - 2DIAGNOSTIC, 106, -6.098684000377e-01, 5.719712414671e-04, 7.6810e-01, 2.3141e-03, - 2DIAGNOSTIC, 107, -6.265782673928e-01, 7.773707641408e-04, 7.7100e-01, 2.8911e-03, - 2DIAGNOSTIC, 108, -6.318671431818e-01, 9.380401535198e-04, 7.7454e-01, 3.5410e-03, - 2DIAGNOSTIC, 109, -6.342305968403e-01, 1.030641551095e-03, 7.7681e-01, 2.2781e-03, - 2DIAGNOSTIC, 110, -6.426573729398e-01, 1.091693931613e-03, 7.7907e-01, 2.2519e-03, - 2DIAGNOSTIC, 111, -6.486673253129e-01, 1.104842313236e-03, 7.8191e-01, 2.8419e-03, - 2DIAGNOSTIC, 112, -6.495240135958e-01, 1.024848622479e-03, 7.8411e-01, 2.2061e-03, - 2DIAGNOSTIC, 113, -6.524221231971e-01, 8.719122409653e-04, 7.8632e-01, 2.2080e-03, - 2DIAGNOSTIC, 114, -6.553464845984e-01, 6.598756316702e-04, 7.8855e-01, 2.2299e-03, - 2DIAGNOSTIC, 115, -6.600029671414e-01, 4.712824296791e-04, 7.9087e-01, 2.3189e-03, - 2DIAGNOSTIC, 116, -6.790576133247e-01, 4.599943048809e-04, 7.9350e-01, 2.6319e-03, - 2DIAGNOSTIC, 117, -7.125368403862e-01, 6.380780307924e-04, 7.9611e-01, 2.6031e-03, - 2DIAGNOSTIC, 118, -7.194347367207e-01, 8.042023436641e-04, 7.9867e-01, 2.5599e-03, - 2DIAGNOSTIC, 119, -7.217401370023e-01, 9.114646817556e-04, 8.0184e-01, 3.1788e-03, - 2DIAGNOSTIC, 120, -7.288771565393e-01, 1.000014644693e-03, 8.0436e-01, 2.5110e-03, - 2DIAGNOSTIC, 121, -7.302790299132e-01, 1.020996959986e-03, 8.0680e-01, 2.4440e-03, - 2DIAGNOSTIC, 122, -7.319315908788e-01, 9.514696567817e-04, 8.0896e-01, 2.1579e-03, - 2DIAGNOSTIC, 123, -7.322376145599e-01, 8.060992833444e-04, 8.1140e-01, 2.4378e-03, - 2DIAGNOSTIC, 124, -7.326286317889e-01, 6.029557658121e-04, 8.1382e-01, 2.4290e-03, - 2DIAGNOSTIC, 125, -7.325875546860e-01, 3.651864955688e-04, 8.1659e-01, 2.7680e-03, - 2DIAGNOSTIC, 126, -7.325474719632e-01, 1.742307066446e-04, 8.1884e-01, 2.2480e-03, - 2DIAGNOSTIC, 127, -7.329003569373e-01, 1.122141016680e-04, 8.2102e-01, 2.1789e-03, - 2DIAGNOSTIC, 128, -7.329614686678e-01, 6.966746937498e-05, 8.2382e-01, 2.8040e-03, - 2DIAGNOSTIC, 129, -7.331182678138e-01, 3.074192934630e-05, 8.2602e-01, 2.1980e-03, - 2DIAGNOSTIC, 130, -7.330832081027e-01, 1.849836138938e-05, 8.2819e-01, 2.1729e-03, - 2DIAGNOSTIC, 131, -7.334023447708e-01, 1.153614972366e-05, 8.3075e-01, 2.5520e-03, - 2DIAGNOSTIC, 132, -7.335545261536e-01, 1.074587396972e-05, 8.3337e-01, 2.6271e-03, - 2DIAGNOSTIC, 133, -7.335342342315e-01, 1.002420184810e-05, 8.3563e-01, 2.2540e-03, - 2DIAGNOSTIC, 134, -7.344305605001e-01, 1.344316799241e-05, 8.3812e-01, 2.4889e-03, - 2DIAGNOSTIC, 135, -7.350052743962e-01, 1.751337734393e-05, 8.4187e-01, 3.7489e-03, - 2DIAGNOSTIC, 136, -7.350102232006e-01, 1.963216329116e-05, 8.4430e-01, 2.4300e-03, - 2DIAGNOSTIC, 137, -7.352107967800e-01, 2.199911565750e-05, 8.4642e-01, 2.1238e-03, - 2DIAGNOSTIC, 138, -7.351107636922e-01, 2.207484233654e-05, 8.4853e-01, 2.1129e-03, - 2DIAGNOSTIC, 139, -7.350951483149e-01, 2.054800003415e-05, 8.5097e-01, 2.4419e-03, - 2DIAGNOSTIC, 140, -7.353075868036e-01, 1.767433324015e-05, 8.5314e-01, 2.1641e-03, - 2DIAGNOSTIC, 141, -7.351729812358e-01, 1.384078252152e-05, 8.5528e-01, 2.1451e-03, - 2DIAGNOSTIC, 142, -7.352239565163e-01, 9.586155514970e-06, 8.5771e-01, 2.4250e-03, - 2DIAGNOSTIC, 143, -7.352796482235e-01, 4.574665634850e-06, 8.5983e-01, 2.1200e-03, - 2DIAGNOSTIC, 144, -7.351849783229e-01, 2.022219421539e-06, 8.6258e-01, 2.7528e-03, - 2DIAGNOSTIC, 145, -7.354071802190e-01, 2.152774408596e-06, 8.6586e-01, 3.2830e-03, - 2DIAGNOSTIC, 146, -7.356104299745e-01, 2.781108370839e-06, 8.6795e-01, 2.0871e-03, - 2DIAGNOSTIC, 147, -7.356138290883e-01, 3.862861301850e-06, 8.7005e-01, 2.0962e-03, - 2DIAGNOSTIC, 148, -7.356235278112e-01, 4.290292590983e-06, 8.7210e-01, 2.0499e-03, - 2DIAGNOSTIC, 149, -7.358376128185e-01, 4.982835267427e-06, 8.7573e-01, 3.6309e-03, - 2DIAGNOSTIC, 150, -7.358480966013e-01, 5.940017887949e-06, 8.7810e-01, 2.3761e-03, - 2DIAGNOSTIC, 151, -7.358526544754e-01, 5.884618874340e-06, 8.8053e-01, 2.4269e-03, - 2DIAGNOSTIC, 152, -7.358583113695e-01, 5.484607065599e-06, 8.8297e-01, 2.4440e-03, - 2DIAGNOSTIC, 153, -7.358687871797e-01, 4.827873089178e-06, 8.8540e-01, 2.4240e-03, - 2DIAGNOSTIC, 154, -7.357075617056e-01, 2.884548599740e-06, 8.8823e-01, 2.8291e-03, - 2DIAGNOSTIC, 155, -7.357111484388e-01, 1.440626316589e-06, 8.9152e-01, 3.2902e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.041969433853e-01, 1.797693134862e+308, 1.1383e+00, 2.4678e-01, - 2DIAGNOSTIC, 2, -6.056224047724e-01, 1.797693134862e+308, 1.1512e+00, 1.2858e-02, - 2DIAGNOSTIC, 3, -6.072048001993e-01, 1.797693134862e+308, 1.1643e+00, 1.3130e-02, - 2DIAGNOSTIC, 4, -6.087153378387e-01, 1.797693134862e+308, 1.1770e+00, 1.2719e-02, - 2DIAGNOSTIC, 5, -6.096368804159e-01, 1.797693134862e+308, 1.1918e+00, 1.4758e-02, - 2DIAGNOSTIC, 6, -6.100073980542e-01, 1.797693134862e+308, 1.2047e+00, 1.2916e-02, - 2DIAGNOSTIC, 7, -6.103254180964e-01, 1.797693134862e+308, 1.2173e+00, 1.2652e-02, - 2DIAGNOSTIC, 8, -6.105232994211e-01, 1.797693134862e+308, 1.2340e+00, 1.6696e-02, - 2DIAGNOSTIC, 9, -6.104520628323e-01, 1.797693134862e+308, 1.2496e+00, 1.5585e-02, - 2DIAGNOSTIC, 10, -6.104224748317e-01, 6.375962359424e-04, 1.2625e+00, 1.2844e-02, - 2DIAGNOSTIC, 11, -6.105750817739e-01, 4.038707245154e-04, 1.2771e+00, 1.4645e-02, - 2DIAGNOSTIC, 12, -6.114375101497e-01, 2.612033752067e-04, 1.2971e+00, 2.0003e-02, - 2DIAGNOSTIC, 13, -6.114264985888e-01, 1.716828349830e-04, 1.3096e+00, 1.2443e-02, - 2DIAGNOSTIC, 14, -6.119717840183e-01, 1.479972659657e-04, 1.3238e+00, 1.4286e-02, - 2DIAGNOSTIC, 15, -6.122724766448e-01, 1.520073198599e-04, 1.3362e+00, 1.2343e-02, - 2DIAGNOSTIC, 16, -6.122658059999e-01, 1.519113122049e-04, 1.3528e+00, 1.6593e-02, - 2DIAGNOSTIC, 17, -6.122803900101e-01, 1.468870344232e-04, 1.3671e+00, 1.4304e-02, - 2DIAGNOSTIC, 18, -6.122566235271e-01, 1.336259849041e-04, 1.3813e+00, 1.4176e-02, - 2DIAGNOSTIC, 19, -6.122514460946e-01, 1.078531544741e-04, 1.3955e+00, 1.4233e-02, - 2DIAGNOSTIC, 20, -6.122608897286e-01, 7.430540385066e-05, 1.4083e+00, 1.2833e-02, - 2DIAGNOSTIC, 21, -6.122767058239e-01, 4.053031239604e-05, 1.4205e+00, 1.2219e-02, - 2DIAGNOSTIC, 22, -6.123236837359e-01, 2.567478411473e-05, 1.4384e+00, 1.7874e-02, - 2DIAGNOSTIC, 23, -6.123507789258e-01, 9.915854087543e-06, 1.4506e+00, 1.2225e-02, - 2DIAGNOSTIC, 24, -6.123277121050e-01, 4.641287736133e-06, 1.4628e+00, 1.2189e-02, - 2DIAGNOSTIC, 25, -6.123433053016e-01, 5.395013306035e-06, 1.4752e+00, 1.2347e-02, - 2DIAGNOSTIC, 26, -6.123843548633e-01, 6.290713932329e-06, 1.4893e+00, 1.4147e-02, - 2DIAGNOSTIC, 27, -6.124509196986e-01, 8.014696307637e-06, 1.5040e+00, 1.4682e-02, - 2DIAGNOSTIC, 28, -6.124455339195e-01, 8.466727240759e-06, 1.5159e+00, 1.1919e-02, - 2DIAGNOSTIC, 29, -6.126647141210e-01, 1.166882467808e-05, 1.5320e+00, 1.6103e-02, - 2DIAGNOSTIC, 30, -6.126475523655e-01, 1.346006736642e-05, 1.5471e+00, 1.5100e-02, - 2DIAGNOSTIC, 31, -6.126772216627e-01, 1.465410914103e-05, 1.5679e+00, 2.0768e-02, - 2DIAGNOSTIC, 32, -6.126716244405e-01, 1.509041292694e-05, 1.5840e+00, 1.6150e-02, - 2DIAGNOSTIC, 33, -6.126727780006e-01, 1.457244255895e-05, 1.5963e+00, 1.2271e-02, - 2DIAGNOSTIC, 34, -6.126574095421e-01, 1.223907879335e-05, 1.6085e+00, 1.2216e-02, - 2DIAGNOSTIC, 35, -6.126582596297e-01, 9.174099727664e-06, 1.6211e+00, 1.2539e-02, - 2DIAGNOSTIC, 36, -6.126589107656e-01, 6.045441577351e-06, 1.6337e+00, 1.2609e-02, - 2DIAGNOSTIC, 37, -6.126604175224e-01, 3.478665444950e-06, 1.6464e+00, 1.2692e-02, - 2DIAGNOSTIC, 38, -6.127164359989e-01, 1.344379938331e-06, 1.6609e+00, 1.4557e-02, - 2DIAGNOSTIC, 39, -6.127356544818e-01, 2.106453163626e-06, 1.6736e+00, 1.2694e-02, - 2DIAGNOSTIC, 40, -6.127854046237e-01, 3.077841513148e-06, 1.6901e+00, 1.6523e-02, - 2DIAGNOSTIC, 41, -6.127692333590e-01, 3.932880766892e-06, 1.7057e+00, 1.5570e-02, - 2DIAGNOSTIC, 42, -6.127479999327e-01, 4.159244847823e-06, 1.7220e+00, 1.6294e-02, - 2DIAGNOSTIC, 43, -6.127501831522e-01, 4.093429369800e-06, 1.7363e+00, 1.4252e-02, - 2DIAGNOSTIC, 44, -6.127207845518e-01, 3.223674451183e-06, 1.7489e+00, 1.2635e-02, - 2DIAGNOSTIC, 45, -6.127313451705e-01, 2.277482161254e-06, 1.7622e+00, 1.3284e-02, - 2DIAGNOSTIC, 46, -6.128022039589e-01, 1.949677931497e-06, 1.7768e+00, 1.4579e-02, - 2DIAGNOSTIC, 47, -6.127734626812e-01, 1.221259556893e-06, 1.7894e+00, 1.2688e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.111090758069e-01, 1.797693134862e+308, 2.2177e+00, 4.2826e-01, - 2DIAGNOSTIC, 2, -5.114257573652e-01, 1.797693134862e+308, 2.3054e+00, 8.7727e-02, - 2DIAGNOSTIC, 3, -5.116019466596e-01, 1.797693134862e+308, 2.3930e+00, 8.7574e-02, - 2DIAGNOSTIC, 4, -5.117364838550e-01, 1.797693134862e+308, 2.4775e+00, 8.4448e-02, - 2DIAGNOSTIC, 5, -5.118643559495e-01, 1.797693134862e+308, 2.5735e+00, 9.6016e-02, - 2DIAGNOSTIC, 6, -5.120255368788e-01, 1.797693134862e+308, 2.6937e+00, 1.2025e-01, - 2DIAGNOSTIC, 7, -5.120933153056e-01, 1.797693134862e+308, 2.8277e+00, 1.3395e-01, - 2DIAGNOSTIC, 8, -5.121024132681e-01, 1.797693134862e+308, 2.9212e+00, 9.3503e-02, - 2DIAGNOSTIC, 9, -5.120988508612e-01, 1.797693134862e+308, 3.0608e+00, 1.3961e-01, - 2DIAGNOSTIC, 10, -5.120994664273e-01, 1.210716457579e-04, 3.1624e+00, 1.0159e-01, - 2DIAGNOSTIC, 11, -5.120986821008e-01, 7.781941520200e-05, 3.2504e+00, 8.8024e-02, - 2DIAGNOSTIC, 12, -5.120952152235e-01, 4.940791716465e-05, 3.3503e+00, 9.9948e-02, - 2DIAGNOSTIC, 13, -5.120971355633e-01, 2.875552606166e-05, 3.4616e+00, 1.1127e-01, - 2DIAGNOSTIC, 14, -5.120979545279e-01, 1.400524760749e-05, 3.5591e+00, 9.7521e-02, - 2DIAGNOSTIC, 15, -5.120971172471e-01, 4.716056060297e-06, 3.6524e+00, 9.3235e-02, - 2DIAGNOSTIC, 16, -5.120966070286e-01, 1.863030434979e-06, 3.7518e+00, 9.9418e-02, - 2DIAGNOSTIC, 17, -5.120946212021e-01, 1.498704858112e-06, 3.8497e+00, 9.7878e-02, - 2DIAGNOSTIC, 18, -5.120921604952e-01, 1.417483274625e-06, 3.9453e+00, 9.5643e-02, - 2DIAGNOSTIC, 19, -5.120900285590e-01, 1.209040646759e-06, 4.0400e+00, 9.4723e-02, - 2DIAGNOSTIC, 20, -5.120916039368e-01, 1.126193482866e-06, 4.1341e+00, 9.4091e-02, - 2DIAGNOSTIC, 21, -5.120888007719e-01, 1.000870330524e-06, 4.2280e+00, 9.3879e-02, - Elapsed time (stage 0): 4.3854e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.226247008610e-01, 1.797693134862e+308, 2.0532e-01, 2.0532e-01, - 2DIAGNOSTIC, 2, -8.253956416174e-01, 1.797693134862e+308, 2.0680e-01, 1.4770e-03, - 2DIAGNOSTIC, 3, -8.296524726047e-01, 1.797693134862e+308, 2.0816e-01, 1.3611e-03, - 2DIAGNOSTIC, 4, -8.325491770466e-01, 1.797693134862e+308, 2.0950e-01, 1.3459e-03, - 2DIAGNOSTIC, 5, -8.440192529371e-01, 1.797693134862e+308, 2.1081e-01, 1.3070e-03, - 2DIAGNOSTIC, 6, -8.660131161610e-01, 1.797693134862e+308, 2.1219e-01, 1.3781e-03, - 2DIAGNOSTIC, 7, -8.865430069769e-01, 1.797693134862e+308, 2.1370e-01, 1.5070e-03, - 2DIAGNOSTIC, 8, -9.140844503833e-01, 1.797693134862e+308, 2.1553e-01, 1.8380e-03, - 2DIAGNOSTIC, 9, -9.238429542052e-01, 1.797693134862e+308, 2.1815e-01, 2.6209e-03, - 2DIAGNOSTIC, 10, -9.251621146710e-01, 9.072599750235e-03, 2.2027e-01, 2.1200e-03, - 2DIAGNOSTIC, 11, -9.249690134008e-01, 8.391963546971e-03, 2.2237e-01, 2.1000e-03, - 2DIAGNOSTIC, 12, -9.248410314696e-01, 7.147279348426e-03, 2.2452e-01, 2.1501e-03, - 2DIAGNOSTIC, 13, -9.254242215046e-01, 5.577790847359e-03, 2.2600e-01, 1.4791e-03, - 2DIAGNOSTIC, 14, -9.258437161247e-01, 3.814102052206e-03, 2.2769e-01, 1.6861e-03, - 2DIAGNOSTIC, 15, -9.276294367971e-01, 2.232185032571e-03, 2.2912e-01, 1.4329e-03, - 2DIAGNOSTIC, 16, -9.277220289303e-01, 1.091197896660e-03, 2.3115e-01, 2.0311e-03, - 2DIAGNOSTIC, 17, -9.281909063388e-01, 3.720068216235e-04, 2.3263e-01, 1.4801e-03, - 2DIAGNOSTIC, 18, -9.279240119897e-01, 1.790990166645e-04, 2.3429e-01, 1.6549e-03, - 2DIAGNOSTIC, 19, -9.270541577956e-01, 1.386383727075e-04, 2.3567e-01, 1.3781e-03, - 2DIAGNOSTIC, 20, -9.272183025972e-01, 1.133339983618e-04, 2.3715e-01, 1.4791e-03, - 2DIAGNOSTIC, 21, -9.277203042127e-01, 8.459962066534e-05, 2.3852e-01, 1.3740e-03, - 2DIAGNOSTIC, 22, -9.293294472963e-01, 7.184510091571e-05, 2.4024e-01, 1.7200e-03, - 2DIAGNOSTIC, 23, -9.306571128384e-01, 7.958444988387e-05, 2.4257e-01, 2.3351e-03, - 2DIAGNOSTIC, 24, -9.296444778354e-01, 7.106522312886e-05, 2.4432e-01, 1.7431e-03, - 2DIAGNOSTIC, 25, -9.290683583469e-01, 7.279623023086e-05, 2.4566e-01, 1.3459e-03, - 2DIAGNOSTIC, 26, -9.283819864185e-01, 6.025610446442e-05, 2.4709e-01, 1.4260e-03, - 2DIAGNOSTIC, 27, -9.284775648650e-01, 4.923879307413e-05, 2.4851e-01, 1.4250e-03, - 2DIAGNOSTIC, 28, -9.278600559425e-01, 2.448358195831e-05, 2.5000e-01, 1.4861e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.137672021761e-01, 1.797693134862e+308, 4.6399e-01, 2.1398e-01, - 2DIAGNOSTIC, 2, -8.133170987053e-01, 1.797693134862e+308, 4.6605e-01, 2.0659e-03, - 2DIAGNOSTIC, 3, -8.142609971654e-01, 1.797693134862e+308, 4.6808e-01, 2.0292e-03, - 2DIAGNOSTIC, 4, -8.154012655354e-01, 1.797693134862e+308, 4.7042e-01, 2.3379e-03, - 2DIAGNOSTIC, 5, -8.167304476833e-01, 1.797693134862e+308, 4.7295e-01, 2.5270e-03, - 2DIAGNOSTIC, 6, -8.169436295382e-01, 1.797693134862e+308, 4.7569e-01, 2.7430e-03, - 2DIAGNOSTIC, 7, -8.168078252915e-01, 1.797693134862e+308, 4.7823e-01, 2.5420e-03, - 2DIAGNOSTIC, 8, -8.167606268814e-01, 1.797693134862e+308, 4.8048e-01, 2.2449e-03, - 2DIAGNOSTIC, 9, -8.166085571791e-01, 1.797693134862e+308, 4.8315e-01, 2.6700e-03, - 2DIAGNOSTIC, 10, -8.167181003886e-01, 2.914307660434e-04, 4.8575e-01, 2.6040e-03, - 2DIAGNOSTIC, 11, -8.164497724304e-01, 1.966756269037e-04, 4.8802e-01, 2.2721e-03, - 2DIAGNOSTIC, 12, -8.164267246264e-01, 8.709532289909e-05, 4.9038e-01, 2.3589e-03, - 2DIAGNOSTIC, 13, -8.166733698279e-01, 1.833678253588e-05, 4.9305e-01, 2.6710e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.847975952900e-01, 1.797693134862e+308, 7.2824e-01, 2.3519e-01, - 2DIAGNOSTIC, 2, -6.861662262998e-01, 1.797693134862e+308, 7.4174e-01, 1.3494e-02, - 2DIAGNOSTIC, 3, -6.875523340121e-01, 1.797693134862e+308, 7.5528e-01, 1.3543e-02, - 2DIAGNOSTIC, 4, -6.892362003339e-01, 1.797693134862e+308, 7.6916e-01, 1.3884e-02, - 2DIAGNOSTIC, 5, -6.906408879628e-01, 1.797693134862e+308, 7.8303e-01, 1.3861e-02, - 2DIAGNOSTIC, 6, -6.921784925926e-01, 1.797693134862e+308, 7.9980e-01, 1.6772e-02, - 2DIAGNOSTIC, 7, -6.940708331632e-01, 1.797693134862e+308, 8.2999e-01, 3.0188e-02, - 2DIAGNOSTIC, 8, -6.941136956955e-01, 1.797693134862e+308, 8.4556e-01, 1.5570e-02, - 2DIAGNOSTIC, 9, -6.942012584495e-01, 1.797693134862e+308, 8.6107e-01, 1.5513e-02, - 2DIAGNOSTIC, 10, -6.942943609690e-01, 9.756462538790e-04, 8.7483e-01, 1.3761e-02, - 2DIAGNOSTIC, 11, -6.943994286637e-01, 7.335712980004e-04, 8.8930e-01, 1.4472e-02, - 2DIAGNOSTIC, 12, -6.945332104479e-01, 5.168008417459e-04, 9.0308e-01, 1.3779e-02, - 2DIAGNOSTIC, 13, -6.947072159381e-01, 3.359370617604e-04, 9.1696e-01, 1.3882e-02, - 2DIAGNOSTIC, 14, -6.949403666514e-01, 2.071464256472e-04, 9.3102e-01, 1.4053e-02, - 2DIAGNOSTIC, 15, -6.951112116011e-01, 1.193439847266e-04, 9.4497e-01, 1.3952e-02, - 2DIAGNOSTIC, 16, -6.955420542136e-01, 8.093221221812e-05, 9.5892e-01, 1.3955e-02, - 2DIAGNOSTIC, 17, -6.962490342487e-01, 1.023393681919e-04, 9.7298e-01, 1.4053e-02, - 2DIAGNOSTIC, 18, -6.974531468557e-01, 1.401160916736e-04, 9.9125e-01, 1.8278e-02, - 2DIAGNOSTIC, 19, -6.977204183361e-01, 1.682271310618e-04, 1.0093e+00, 1.8079e-02, - 2DIAGNOSTIC, 20, -6.978334219887e-01, 1.825573563271e-04, 1.0231e+00, 1.3774e-02, - 2DIAGNOSTIC, 21, -6.979354727558e-01, 1.829193359586e-04, 1.0370e+00, 1.3923e-02, - 2DIAGNOSTIC, 22, -6.980985994740e-01, 1.715703796334e-04, 1.0554e+00, 1.8393e-02, - 2DIAGNOSTIC, 23, -6.982065681301e-01, 1.499099179238e-04, 1.0720e+00, 1.6583e-02, - 2DIAGNOSTIC, 24, -6.982897581555e-01, 1.215928090617e-04, 1.0868e+00, 1.4806e-02, - 2DIAGNOSTIC, 25, -6.988277254107e-01, 9.609833220154e-05, 1.1019e+00, 1.5092e-02, - 2DIAGNOSTIC, 26, -7.000169691889e-01, 8.889187808289e-05, 1.1229e+00, 2.0971e-02, - 2DIAGNOSTIC, 27, -7.000851563843e-01, 8.481713472934e-05, 1.1415e+00, 1.8589e-02, - 2DIAGNOSTIC, 28, -7.000897666538e-01, 9.100616896475e-05, 1.1559e+00, 1.4434e-02, - 2DIAGNOSTIC, 29, -7.001307399424e-01, 9.286471278017e-05, 1.1703e+00, 1.4423e-02, - 2DIAGNOSTIC, 30, -7.001101913526e-01, 8.700606301240e-05, 1.1852e+00, 1.4874e-02, - 2DIAGNOSTIC, 31, -7.003008910333e-01, 7.694777967733e-05, 1.2012e+00, 1.6022e-02, - 2DIAGNOSTIC, 32, -7.004312128981e-01, 6.402602750611e-05, 1.2215e+00, 2.0326e-02, - 2DIAGNOSTIC, 33, -7.004420116666e-01, 4.764918675172e-05, 1.2380e+00, 1.6422e-02, - 2DIAGNOSTIC, 34, -7.005084871950e-01, 2.965426800473e-05, 1.2539e+00, 1.5922e-02, - 2DIAGNOSTIC, 35, -7.004983577726e-01, 1.573546641605e-05, 1.2677e+00, 1.3863e-02, - 2DIAGNOSTIC, 36, -7.004859497728e-01, 1.449148543789e-05, 1.2817e+00, 1.3939e-02, - 2DIAGNOSTIC, 37, -7.004945052002e-01, 1.284970205935e-05, 1.2962e+00, 1.4500e-02, - 2DIAGNOSTIC, 38, -7.005216796336e-01, 1.049716268803e-05, 1.3114e+00, 1.5171e-02, - 2DIAGNOSTIC, 39, -7.006159615359e-01, 8.792649360160e-06, 1.3251e+00, 1.3720e-02, - 2DIAGNOSTIC, 40, -7.010630663636e-01, 1.070333932534e-05, 1.3449e+00, 1.9787e-02, - 2DIAGNOSTIC, 41, -7.010380309591e-01, 1.308922045336e-05, 1.3671e+00, 2.2238e-02, - 2DIAGNOSTIC, 42, -7.010494144333e-01, 1.563723885597e-05, 1.3835e+00, 1.6382e-02, - 2DIAGNOSTIC, 43, -7.010214816654e-01, 1.651655324289e-05, 1.3986e+00, 1.5089e-02, - 2DIAGNOSTIC, 44, -7.010179708013e-01, 1.640788327639e-05, 1.4126e+00, 1.4040e-02, - 2DIAGNOSTIC, 45, -7.010632034871e-01, 1.505959354728e-05, 1.4285e+00, 1.5894e-02, - 2DIAGNOSTIC, 46, -7.010674289131e-01, 1.231184100780e-05, 1.4428e+00, 1.4248e-02, - 2DIAGNOSTIC, 47, -7.010940210303e-01, 8.944103760830e-06, 1.4581e+00, 1.5385e-02, - 2DIAGNOSTIC, 48, -7.011247440266e-01, 5.441009800634e-06, 1.4737e+00, 1.5529e-02, - 2DIAGNOSTIC, 49, -7.010779163471e-01, 1.907160520530e-06, 1.4894e+00, 1.5679e-02, - 2DIAGNOSTIC, 50, -7.010811000636e-01, 2.079367782022e-06, 1.5054e+00, 1.6053e-02, - 2DIAGNOSTIC, 51, -7.010628362729e-01, 1.751087853139e-06, 1.5200e+00, 1.4572e-02, - 2DIAGNOSTIC, 52, -7.010263543216e-01, 1.136623973441e-06, 1.5349e+00, 1.4879e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.838514572711e-01, 1.797693134862e+308, 1.9779e+00, 4.4302e-01, - 2DIAGNOSTIC, 2, -5.847093390380e-01, 1.797693134862e+308, 2.0761e+00, 9.8208e-02, - 2DIAGNOSTIC, 3, -5.852693446652e-01, 1.797693134862e+308, 2.1910e+00, 1.1496e-01, - 2DIAGNOSTIC, 4, -5.855311961354e-01, 1.797693134862e+308, 2.2882e+00, 9.7110e-02, - 2DIAGNOSTIC, 5, -5.857498331179e-01, 1.797693134862e+308, 2.3914e+00, 1.0328e-01, - 2DIAGNOSTIC, 6, -5.860826821796e-01, 1.797693134862e+308, 2.4916e+00, 1.0019e-01, - 2DIAGNOSTIC, 7, -5.865130268276e-01, 1.797693134862e+308, 2.6242e+00, 1.3262e-01, - 2DIAGNOSTIC, 8, -5.865893901734e-01, 1.797693134862e+308, 2.7377e+00, 1.1349e-01, - 2DIAGNOSTIC, 9, -5.866458252024e-01, 1.797693134862e+308, 2.8653e+00, 1.2754e-01, - 2DIAGNOSTIC, 10, -5.867108407300e-01, 2.938742639239e-04, 2.9598e+00, 9.4491e-02, - 2DIAGNOSTIC, 11, -5.867275890518e-01, 2.023752770861e-04, 3.0588e+00, 9.9065e-02, - 2DIAGNOSTIC, 12, -5.867627161547e-01, 1.436758642517e-04, 3.1510e+00, 9.2202e-02, - 2DIAGNOSTIC, 13, -5.869632357499e-01, 1.095720092035e-04, 3.3099e+00, 1.5892e-01, - 2DIAGNOSTIC, 14, -5.869745323277e-01, 8.001927800394e-05, 3.4253e+00, 1.1534e-01, - 2DIAGNOSTIC, 15, -5.869727428661e-01, 5.426668638622e-05, 3.5515e+00, 1.2625e-01, - 2DIAGNOSTIC, 16, -5.869729033176e-01, 3.681390694731e-05, 3.6493e+00, 9.7779e-02, - 2DIAGNOSTIC, 17, -5.869713264955e-01, 3.039043430442e-05, 3.7649e+00, 1.1554e-01, - 2DIAGNOSTIC, 18, -5.869736259328e-01, 2.405539807944e-05, 3.8780e+00, 1.1314e-01, - 2DIAGNOSTIC, 19, -5.869760330226e-01, 1.777029415871e-05, 3.9771e+00, 9.9147e-02, - 2DIAGNOSTIC, 20, -5.869769559763e-01, 1.229293844358e-05, 4.0907e+00, 1.1359e-01, - 2DIAGNOSTIC, 21, -5.869858074840e-01, 6.969772459141e-06, 4.1882e+00, 9.7440e-02, - 2DIAGNOSTIC, 22, -5.870049026123e-01, 2.687935594686e-06, 4.2878e+00, 9.9620e-02, - 2DIAGNOSTIC, 23, -5.870228945995e-01, 3.250020038932e-06, 4.4034e+00, 1.1563e-01, - 2DIAGNOSTIC, 24, -5.870358326347e-01, 4.076347801828e-06, 4.5021e+00, 9.8670e-02, - 2DIAGNOSTIC, 25, -5.870533422853e-01, 4.885225113278e-06, 4.6115e+00, 1.0943e-01, - 2DIAGNOSTIC, 26, -5.870617935781e-01, 5.449586703232e-06, 4.7057e+00, 9.4142e-02, - 2DIAGNOSTIC, 27, -5.870974716390e-01, 6.181374618684e-06, 4.8552e+00, 1.4953e-01, - 2DIAGNOSTIC, 28, -5.871174639974e-01, 6.757996185026e-06, 4.9652e+00, 1.0999e-01, - 2DIAGNOSTIC, 29, -5.871163529607e-01, 6.786234160019e-06, 5.0753e+00, 1.1009e-01, - 2DIAGNOSTIC, 30, -5.871289373888e-01, 6.504967431861e-06, 5.1846e+00, 1.0937e-01, - 2DIAGNOSTIC, 31, -5.871295184214e-01, 5.866033592407e-06, 5.2937e+00, 1.0903e-01, - 2DIAGNOSTIC, 32, -5.871262525862e-01, 5.038119035176e-06, 5.3916e+00, 9.7886e-02, - 2DIAGNOSTIC, 33, -5.871357304169e-01, 4.277513186511e-06, 5.5072e+00, 1.1568e-01, - 2DIAGNOSTIC, 34, -5.871377951837e-01, 3.457779404054e-06, 5.6195e+00, 1.1228e-01, - 2DIAGNOSTIC, 35, -5.871380203008e-01, 2.695049552397e-06, 5.7354e+00, 1.1590e-01, - 2DIAGNOSTIC, 36, -5.871385471209e-01, 1.916706109627e-06, 5.8498e+00, 1.1442e-01, - 2DIAGNOSTIC, 37, -5.871355022197e-01, 1.504982042672e-06, 5.9627e+00, 1.1288e-01, - 2DIAGNOSTIC, 38, -5.871374802550e-01, 1.335347751676e-06, 6.0911e+00, 1.2836e-01, - 2DIAGNOSTIC, 39, -5.871356235849e-01, 1.083137837598e-06, 6.2032e+00, 1.1207e-01, - Elapsed time (stage 1): 6.3332e+00 - - -Total elapsed time: 1.0722e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:35:03 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:35:04 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55ecc19a14f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 62.5211, -112.819] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ecc19a6fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f786bef6010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55ecc19a2850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 62.5211, -112.819] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ecc199ff30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7868837010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55ecc19b9b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 62.5211, -112.819] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ecc19a6550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7865178010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55ecc19bed70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 62.5211, -112.819] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ecc19bcc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f7861ab9010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55ecc19c0f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 62.5211, -112.819] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ecc19bf3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f785e3fa010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55ecc19c1540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 62.5211, -112.819] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ecc19c14d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f785ad3b010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.452053223890e-01, 1.797693134862e+308, 2.1808e-01, 2.1808e-01, - 2DIAGNOSTIC, 2, -6.484803876757e-01, 1.797693134862e+308, 2.2060e-01, 2.5198e-03, - 2DIAGNOSTIC, 3, -6.534529466521e-01, 1.797693134862e+308, 2.2303e-01, 2.4300e-03, - 2DIAGNOSTIC, 4, -6.584950353176e-01, 1.797693134862e+308, 2.2539e-01, 2.3670e-03, - 2DIAGNOSTIC, 5, -6.622078532478e-01, 1.797693134862e+308, 2.2760e-01, 2.2039e-03, - 2DIAGNOSTIC, 6, -6.634856801095e-01, 1.797693134862e+308, 2.3003e-01, 2.4290e-03, - 2DIAGNOSTIC, 7, -6.641989001389e-01, 1.797693134862e+308, 2.3250e-01, 2.4760e-03, - 2DIAGNOSTIC, 8, -6.639680686285e-01, 1.797693134862e+308, 2.3520e-01, 2.6951e-03, - 2DIAGNOSTIC, 9, -6.637859494919e-01, 1.797693134862e+308, 2.3734e-01, 2.1448e-03, - 2DIAGNOSTIC, 10, -6.637403128800e-01, 1.822385089374e-03, 2.4030e-01, 2.9562e-03, - 2DIAGNOSTIC, 11, -6.637678748818e-01, 1.136836706481e-03, 2.4282e-01, 2.5232e-03, - 2DIAGNOSTIC, 12, -6.637985237264e-01, 5.818788828058e-04, 2.4534e-01, 2.5170e-03, - 2DIAGNOSTIC, 13, -6.641918951715e-01, 2.357052961969e-04, 2.4842e-01, 3.0770e-03, - 2DIAGNOSTIC, 14, -6.643367184711e-01, 7.496085360835e-05, 2.5089e-01, 2.4712e-03, - 2DIAGNOSTIC, 15, -6.643421206583e-01, 3.496192488071e-05, 2.5593e-01, 5.0390e-03, - 2DIAGNOSTIC, 16, -6.643421382538e-01, 3.083359563899e-05, 2.5924e-01, 3.3178e-03, - 2DIAGNOSTIC, 17, -6.643421436521e-01, 4.268151019772e-05, 2.6216e-01, 2.9180e-03, - 2DIAGNOSTIC, 18, -6.643421531523e-01, 4.387614332980e-05, 2.6439e-01, 2.2321e-03, - 2DIAGNOSTIC, 19, -6.643421864695e-01, 3.688469715040e-05, 2.6662e-01, 2.2259e-03, - 2DIAGNOSTIC, 20, -6.643422991731e-01, 2.646209900875e-05, 2.6866e-01, 2.0380e-03, - 2DIAGNOSTIC, 21, -6.643426149302e-01, 1.541757645347e-05, 2.7063e-01, 1.9760e-03, - 2DIAGNOSTIC, 22, -6.643433267427e-01, 4.511477792429e-06, 2.7270e-01, 2.0621e-03, - 2DIAGNOSTIC, 23, -6.643446431513e-01, 1.563617889354e-06, 2.7474e-01, 2.0490e-03, - 2DIAGNOSTIC, 24, -6.643475458872e-01, 1.485478331939e-06, 2.7674e-01, 1.9991e-03, - 2DIAGNOSTIC, 25, -6.643491921984e-01, 1.519056531944e-06, 2.7959e-01, 2.8431e-03, - 2DIAGNOSTIC, 26, -6.643512099638e-01, 1.560888751528e-06, 2.8346e-01, 3.8681e-03, - 2DIAGNOSTIC, 27, -6.643512236223e-01, 1.568415565853e-06, 2.8553e-01, 2.0740e-03, - 2DIAGNOSTIC, 28, -6.643513046603e-01, 1.540657342709e-06, 2.8760e-01, 2.0680e-03, - 2DIAGNOSTIC, 29, -6.643513596137e-01, 1.477999653034e-06, 2.9023e-01, 2.6281e-03, - 2DIAGNOSTIC, 30, -6.643513639654e-01, 1.385119238473e-06, 2.9312e-01, 2.8968e-03, - 2DIAGNOSTIC, 31, -6.643513643560e-01, 1.272234736532e-06, 2.9610e-01, 2.9769e-03, - 2DIAGNOSTIC, 32, -6.643513644004e-01, 1.153149411647e-06, 2.9919e-01, 3.0940e-03, - 2DIAGNOSTIC, 33, -6.643513644036e-01, 1.043163631691e-06, 3.0207e-01, 2.8782e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.584893437663e-01, 1.797693134862e+308, 5.3071e-01, 2.2864e-01, - 2DIAGNOSTIC, 2, -5.590909202670e-01, 1.797693134862e+308, 5.4443e-01, 1.3721e-02, - 2DIAGNOSTIC, 3, -5.596151798035e-01, 1.797693134862e+308, 5.5784e-01, 1.3403e-02, - 2DIAGNOSTIC, 4, -5.600321059398e-01, 1.797693134862e+308, 5.7140e-01, 1.3563e-02, - 2DIAGNOSTIC, 5, -5.602476866217e-01, 1.797693134862e+308, 5.8471e-01, 1.3308e-02, - 2DIAGNOSTIC, 6, -5.604346912385e-01, 1.797693134862e+308, 6.0174e-01, 1.7029e-02, - 2DIAGNOSTIC, 7, -5.606603401431e-01, 1.797693134862e+308, 6.1698e-01, 1.5239e-02, - 2DIAGNOSTIC, 8, -5.606956499257e-01, 1.797693134862e+308, 6.3587e-01, 1.8893e-02, - 2DIAGNOSTIC, 9, -5.607370956872e-01, 1.797693134862e+308, 6.5304e-01, 1.7170e-02, - 2DIAGNOSTIC, 10, -5.607492319755e-01, 2.457827525512e-04, 6.7085e-01, 1.7813e-02, - 2DIAGNOSTIC, 11, -5.607550410415e-01, 1.595498814818e-04, 6.8659e-01, 1.5737e-02, - 2DIAGNOSTIC, 12, -5.607527513795e-01, 9.855294761960e-05, 7.0430e-01, 1.7711e-02, - 2DIAGNOSTIC, 13, -5.607434206667e-01, 5.808964369404e-05, 7.1940e-01, 1.5095e-02, - 2DIAGNOSTIC, 14, -5.607347830327e-01, 3.312363951821e-05, 7.3271e-01, 1.3311e-02, - 2DIAGNOSTIC, 15, -5.607293381962e-01, 1.569936818022e-05, 7.4848e-01, 1.5773e-02, - 2DIAGNOSTIC, 16, -5.607350043668e-01, 5.139975698537e-06, 7.6231e-01, 1.3831e-02, - 2DIAGNOSTIC, 17, -5.607305880331e-01, 2.115440040126e-06, 7.7600e-01, 1.3688e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.664283099155e-01, 1.797693134862e+308, 1.1887e+00, 4.1271e-01, - 2DIAGNOSTIC, 2, -4.671543457802e-01, 1.797693134862e+308, 1.2817e+00, 9.2968e-02, - 2DIAGNOSTIC, 3, -4.675620920301e-01, 1.797693134862e+308, 1.3758e+00, 9.4122e-02, - 2DIAGNOSTIC, 4, -4.676631208908e-01, 1.797693134862e+308, 1.4837e+00, 1.0788e-01, - 2DIAGNOSTIC, 5, -4.676729681896e-01, 1.797693134862e+308, 1.5882e+00, 1.0449e-01, - 2DIAGNOSTIC, 6, -4.676569120915e-01, 1.797693134862e+308, 1.7198e+00, 1.3164e-01, - 2DIAGNOSTIC, 7, -4.676554652038e-01, 1.797693134862e+308, 1.8524e+00, 1.3258e-01, - 2DIAGNOSTIC, 8, -4.676563460101e-01, 1.797693134862e+308, 1.9591e+00, 1.0672e-01, - 2DIAGNOSTIC, 9, -4.676545805953e-01, 1.797693134862e+308, 2.0649e+00, 1.0576e-01, - 2DIAGNOSTIC, 10, -4.676553865616e-01, 1.079960734246e-04, 2.1717e+00, 1.0678e-01, - 2DIAGNOSTIC, 11, -4.676534347899e-01, 3.420698184708e-05, 2.2715e+00, 9.9885e-02, - 2DIAGNOSTIC, 12, -4.676559680330e-01, 6.305581885940e-06, 2.3751e+00, 1.0358e-01, - 2DIAGNOSTIC, 13, -4.676563793071e-01, 1.308405104844e-06, 2.4816e+00, 1.0650e-01, - 2DIAGNOSTIC, 14, -4.676562274021e-01, 1.487768270386e-06, 2.6304e+00, 1.4877e-01, - 2DIAGNOSTIC, 15, -4.676542806611e-01, 2.055660173500e-06, 2.7494e+00, 1.1898e-01, - 2DIAGNOSTIC, 16, -4.676535793748e-01, 1.925863527555e-06, 2.8565e+00, 1.0714e-01, - 2DIAGNOSTIC, 17, -4.676529845411e-01, 1.741385572296e-06, 2.9532e+00, 9.6726e-02, - 2DIAGNOSTIC, 18, -4.676528845709e-01, 1.615450975594e-06, 3.0633e+00, 1.1009e-01, - 2DIAGNOSTIC, 19, -4.676505169967e-01, 1.384245248780e-06, 3.1820e+00, 1.1866e-01, - 2DIAGNOSTIC, 20, -4.676500552175e-01, 1.219255998719e-06, 3.2866e+00, 1.0464e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.024114152303e-01, 1.797693134862e+308, 4.7207e+00, 1.4341e+00, - 2DIAGNOSTIC, 2, -4.024228753650e-01, 1.797693134862e+308, 5.3448e+00, 6.2405e-01, - 2DIAGNOSTIC, 3, -4.024238577098e-01, 1.797693134862e+308, 6.4373e+00, 1.0925e+00, - 2DIAGNOSTIC, 4, -4.024239960491e-01, 1.797693134862e+308, 7.0667e+00, 6.2948e-01, - 2DIAGNOSTIC, 5, -4.024237609995e-01, 1.797693134862e+308, 7.8410e+00, 7.7423e-01, - 2DIAGNOSTIC, 6, -4.024237930484e-01, 1.797693134862e+308, 8.5361e+00, 6.9513e-01, - 2DIAGNOSTIC, 7, -4.024237291267e-01, 1.797693134862e+308, 9.1493e+00, 6.1316e-01, - 2DIAGNOSTIC, 8, -4.024237876144e-01, 1.797693134862e+308, 9.7221e+00, 5.7285e-01, - 2DIAGNOSTIC, 9, -4.024236004965e-01, 1.797693134862e+308, 1.0358e+01, 6.3634e-01, - 2DIAGNOSTIC, 10, -4.024236867693e-01, 4.080513210658e-06, 1.0968e+01, 6.0963e-01, - 2DIAGNOSTIC, 11, -4.024236459448e-01, 2.913990393941e-06, 1.1515e+01, 5.4702e-01, - 2DIAGNOSTIC, 12, -4.024236745637e-01, 2.614268504980e-06, 1.2148e+01, 6.3282e-01, - 2DIAGNOSTIC, 13, -4.024238454293e-01, 2.426270939201e-06, 1.2768e+01, 6.2047e-01, - 2DIAGNOSTIC, 14, -4.024237607255e-01, 2.269887972750e-06, 1.3381e+01, 6.1260e-01, - 2DIAGNOSTIC, 15, -4.024237458434e-01, 2.122964513032e-06, 1.4017e+01, 6.3626e-01, - 2DIAGNOSTIC, 16, -4.024235724260e-01, 1.988041391052e-06, 1.4650e+01, 6.3304e-01, - 2DIAGNOSTIC, 17, -4.024233988420e-01, 1.859128455767e-06, 1.5199e+01, 5.4909e-01, - 2DIAGNOSTIC, 18, -4.024232991252e-01, 1.744258376547e-06, 1.5745e+01, 5.4525e-01, - 2DIAGNOSTIC, 19, -4.024237529220e-01, 1.653381158720e-06, 1.6496e+01, 7.5158e-01, - 2DIAGNOSTIC, 20, -4.024236859480e-01, 1.573803244094e-06, 1.7201e+01, 7.0515e-01, - 2DIAGNOSTIC, 21, -4.024235730995e-01, 1.498502500717e-06, 1.7827e+01, 6.2525e-01, - 2DIAGNOSTIC, 22, -4.024234600518e-01, 1.429099294452e-06, 1.8390e+01, 5.6299e-01, - 2DIAGNOSTIC, 23, -4.024232243269e-01, 1.365337914741e-06, 1.9023e+01, 6.3384e-01, - 2DIAGNOSTIC, 24, -4.024232567202e-01, 1.306775249982e-06, 1.9590e+01, 5.6686e-01, - 2DIAGNOSTIC, 25, -4.024231684139e-01, 1.251605618167e-06, 2.0141e+01, 5.5052e-01, - 2DIAGNOSTIC, 26, -4.024232599223e-01, 1.200758857019e-06, 2.0685e+01, 5.4429e-01, - 2DIAGNOSTIC, 27, -4.024231272079e-01, 1.147996030577e-06, 2.1304e+01, 6.1889e-01, - 2DIAGNOSTIC, 28, -4.024230963000e-01, 1.098351056120e-06, 2.1931e+01, 6.2696e-01, - 2DIAGNOSTIC, 29, -4.024228272316e-01, 1.060195134836e-06, 2.2558e+01, 6.2671e-01, - 2DIAGNOSTIC, 30, -4.024230165117e-01, 1.031031141782e-06, 2.3099e+01, 5.4085e-01, - 2DIAGNOSTIC, 31, -4.024231902978e-01, 1.007706615458e-06, 2.3701e+01, 6.0201e-01, - Elapsed time (stage 0): 2.4069e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.434668735907e-01, 1.797693134862e+308, 1.8348e-01, 1.8348e-01, - 2DIAGNOSTIC, 2, -6.450378584291e-01, 1.797693134862e+308, 1.8564e-01, 2.1579e-03, - 2DIAGNOSTIC, 3, -6.469824388349e-01, 1.797693134862e+308, 1.8775e-01, 2.1160e-03, - 2DIAGNOSTIC, 4, -6.490128941975e-01, 1.797693134862e+308, 1.8972e-01, 1.9679e-03, - 2DIAGNOSTIC, 5, -6.513981443000e-01, 1.797693134862e+308, 1.9169e-01, 1.9710e-03, - 2DIAGNOSTIC, 6, -6.540326762809e-01, 1.797693134862e+308, 1.9369e-01, 2.0030e-03, - 2DIAGNOSTIC, 7, -6.554389116676e-01, 1.797693134862e+308, 1.9607e-01, 2.3739e-03, - 2DIAGNOSTIC, 8, -6.564084345664e-01, 1.797693134862e+308, 2.0292e-01, 6.8560e-03, - 2DIAGNOSTIC, 9, -6.564083469773e-01, 1.797693134862e+308, 2.0492e-01, 1.9991e-03, - 2DIAGNOSTIC, 10, -6.564085014938e-01, 1.439741879051e-03, 2.0716e-01, 2.2349e-03, - 2DIAGNOSTIC, 11, -6.564087627476e-01, 1.087636112580e-03, 2.0952e-01, 2.3599e-03, - 2DIAGNOSTIC, 12, -6.564092043039e-01, 7.533616670863e-04, 2.1188e-01, 2.3570e-03, - 2DIAGNOSTIC, 13, -6.564099503410e-01, 4.679622238709e-04, 2.1414e-01, 2.2609e-03, - 2DIAGNOSTIC, 14, -6.564112093327e-01, 2.439269805600e-04, 2.1641e-01, 2.2700e-03, - 2DIAGNOSTIC, 15, -6.564133243678e-01, 9.587931299564e-05, 2.1870e-01, 2.2910e-03, - 2DIAGNOSTIC, 16, -6.564168887964e-01, 2.877911072327e-05, 2.2101e-01, 2.3129e-03, - 2DIAGNOSTIC, 17, -6.564228844546e-01, 2.559068175562e-06, 2.2337e-01, 2.3570e-03, - 2DIAGNOSTIC, 18, -6.564329106282e-01, 2.860796247478e-06, 2.2568e-01, 2.3079e-03, - 2DIAGNOSTIC, 19, -6.564495505922e-01, 3.404516637474e-06, 2.2814e-01, 2.4641e-03, - 2DIAGNOSTIC, 20, -6.564769602822e-01, 4.325932108251e-06, 2.3057e-01, 2.4340e-03, - 2DIAGNOSTIC, 21, -6.565213060995e-01, 5.817790933435e-06, 2.3323e-01, 2.6538e-03, - 2DIAGNOSTIC, 22, -6.564454293707e-01, 5.267145556077e-06, 2.3585e-01, 2.6200e-03, - 2DIAGNOSTIC, 23, -6.564992951057e-01, 5.494512309565e-06, 2.3819e-01, 2.3470e-03, - 2DIAGNOSTIC, 24, -6.564437497513e-01, 4.298078062813e-06, 2.4048e-01, 2.2871e-03, - 2DIAGNOSTIC, 25, -6.565577315549e-01, 4.943223973833e-06, 2.4277e-01, 2.2869e-03, - 2DIAGNOSTIC, 26, -6.567038319336e-01, 7.636391760130e-06, 2.4524e-01, 2.4760e-03, - 2DIAGNOSTIC, 27, -6.566618765968e-01, 8.908387612985e-06, 2.4776e-01, 2.5139e-03, - 2DIAGNOSTIC, 28, -6.565954696961e-01, 8.563698738397e-06, 2.5027e-01, 2.5120e-03, - 2DIAGNOSTIC, 29, -6.563947572990e-01, 4.825512342148e-06, 2.5291e-01, 2.6350e-03, - 2DIAGNOSTIC, 30, -6.564939103199e-01, 2.825829444685e-06, 2.5561e-01, 2.7001e-03, - 2DIAGNOSTIC, 31, -6.564881073226e-01, 1.228143773353e-06, 2.5839e-01, 2.7852e-03, - 2DIAGNOSTIC, 32, -6.567648811864e-01, 2.410726179243e-06, 2.6133e-01, 2.9349e-03, - 2DIAGNOSTIC, 33, -6.571872452269e-01, 9.662322934284e-06, 2.6382e-01, 2.4970e-03, - 2DIAGNOSTIC, 34, -6.574782091769e-01, 1.856511752921e-05, 2.6685e-01, 3.0320e-03, - 2DIAGNOSTIC, 35, -6.576421768088e-01, 2.866062188445e-05, 2.6982e-01, 2.9669e-03, - 2DIAGNOSTIC, 36, -6.576658113025e-01, 3.761794024371e-05, 2.7220e-01, 2.3751e-03, - 2DIAGNOSTIC, 37, -6.576935787114e-01, 4.243813743068e-05, 2.7454e-01, 2.3410e-03, - 2DIAGNOSTIC, 38, -6.580705366037e-01, 4.658506702259e-05, 2.7680e-01, 2.2640e-03, - 2DIAGNOSTIC, 39, -6.585278817128e-01, 4.883834413222e-05, 2.7963e-01, 2.8241e-03, - 2DIAGNOSTIC, 40, -6.589668151721e-01, 5.221302961213e-05, 2.8240e-01, 2.7750e-03, - 2DIAGNOSTIC, 41, -6.592100809461e-01, 5.302540897282e-05, 2.8463e-01, 2.2321e-03, - 2DIAGNOSTIC, 42, -6.599351597318e-01, 5.912638044246e-05, 2.8689e-01, 2.2590e-03, - 2DIAGNOSTIC, 43, -6.603634272718e-01, 6.768817241649e-05, 2.8966e-01, 2.7640e-03, - 2DIAGNOSTIC, 44, -6.603387017753e-01, 7.194096183494e-05, 2.9217e-01, 2.5108e-03, - 2DIAGNOSTIC, 45, -6.601465014477e-01, 6.905175785612e-05, 2.9441e-01, 2.2421e-03, - 2DIAGNOSTIC, 46, -6.601187202119e-01, 5.985177861372e-05, 2.9690e-01, 2.4941e-03, - 2DIAGNOSTIC, 47, -6.597960719413e-01, 4.252972132174e-05, 2.9912e-01, 2.2211e-03, - 2DIAGNOSTIC, 48, -6.596287311040e-01, 2.374528192174e-05, 3.0160e-01, 2.4800e-03, - 2DIAGNOSTIC, 49, -6.595628196909e-01, 6.998546498497e-06, 3.0382e-01, 2.2190e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.467465938057e-01, 1.797693134862e+308, 5.1067e-01, 2.0684e-01, - 2DIAGNOSTIC, 2, -5.483961196374e-01, 1.797693134862e+308, 5.2499e-01, 1.4322e-02, - 2DIAGNOSTIC, 3, -5.504515658131e-01, 1.797693134862e+308, 5.3950e-01, 1.4509e-02, - 2DIAGNOSTIC, 4, -5.523272497230e-01, 1.797693134862e+308, 5.5451e-01, 1.5011e-02, - 2DIAGNOSTIC, 5, -5.538065102130e-01, 1.797693134862e+308, 5.6943e-01, 1.4921e-02, - 2DIAGNOSTIC, 6, -5.548383203271e-01, 1.797693134862e+308, 5.8451e-01, 1.5076e-02, - 2DIAGNOSTIC, 7, -5.562415527419e-01, 1.797693134862e+308, 6.0523e-01, 2.0724e-02, - 2DIAGNOSTIC, 8, -5.566457397546e-01, 1.797693134862e+308, 6.2252e-01, 1.7290e-02, - 2DIAGNOSTIC, 9, -5.569458305421e-01, 1.797693134862e+308, 6.3742e-01, 1.4905e-02, - 2DIAGNOSTIC, 10, -5.575005891440e-01, 1.265044088529e-03, 6.5276e-01, 1.5334e-02, - 2DIAGNOSTIC, 11, -5.579184843137e-01, 9.584030396783e-04, 6.6784e-01, 1.5083e-02, - 2DIAGNOSTIC, 12, -5.585386789128e-01, 7.127570187533e-04, 6.8245e-01, 1.4606e-02, - 2DIAGNOSTIC, 13, -5.588662625603e-01, 5.336061715647e-04, 6.9903e-01, 1.6579e-02, - 2DIAGNOSTIC, 14, -5.589924085034e-01, 4.048537666039e-04, 7.2006e-01, 2.1030e-02, - 2DIAGNOSTIC, 15, -5.591176697550e-01, 3.111489902864e-04, 7.3522e-01, 1.5164e-02, - 2DIAGNOSTIC, 16, -5.591966913511e-01, 2.351992808445e-04, 7.5040e-01, 1.5179e-02, - 2DIAGNOSTIC, 17, -5.592993569594e-01, 1.917631673839e-04, 7.6749e-01, 1.7093e-02, - 2DIAGNOSTIC, 18, -5.594112945632e-01, 1.502120014568e-04, 7.8874e-01, 2.1247e-02, - 2DIAGNOSTIC, 19, -5.594872359363e-01, 1.092844716720e-04, 8.0410e-01, 1.5360e-02, - 2DIAGNOSTIC, 20, -5.595660305403e-01, 7.863348305825e-05, 8.1908e-01, 1.4977e-02, - 2DIAGNOSTIC, 21, -5.599059405083e-01, 6.184766793078e-05, 8.3603e-01, 1.6953e-02, - 2DIAGNOSTIC, 22, -5.600258531646e-01, 5.777786765643e-05, 8.6185e-01, 2.5824e-02, - 2DIAGNOSTIC, 23, -5.600272287295e-01, 5.606577126085e-05, 8.7586e-01, 1.4011e-02, - 2DIAGNOSTIC, 24, -5.600341330426e-01, 5.228739095667e-05, 8.9016e-01, 1.4296e-02, - 2DIAGNOSTIC, 25, -5.600427122031e-01, 4.675445194065e-05, 9.0465e-01, 1.4488e-02, - 2DIAGNOSTIC, 26, -5.600527485655e-01, 3.898377637836e-05, 9.1917e-01, 1.4523e-02, - 2DIAGNOSTIC, 27, -5.600677630483e-01, 3.037646168595e-05, 9.3393e-01, 1.4756e-02, - 2DIAGNOSTIC, 28, -5.600877954105e-01, 2.210404382693e-05, 9.4929e-01, 1.5359e-02, - 2DIAGNOSTIC, 29, -5.601118513682e-01, 1.424363283023e-05, 9.6819e-01, 1.8900e-02, - 2DIAGNOSTIC, 30, -5.601130127739e-01, 6.878362885154e-06, 9.8718e-01, 1.8990e-02, - 2DIAGNOSTIC, 31, -5.601134129584e-01, 4.986796798750e-06, 1.0019e+00, 1.4735e-02, - 2DIAGNOSTIC, 32, -5.601154356098e-01, 4.784553961877e-06, 1.0168e+00, 1.4882e-02, - 2DIAGNOSTIC, 33, -5.601168416662e-01, 4.271556554900e-06, 1.0392e+00, 2.2366e-02, - 2DIAGNOSTIC, 34, -5.601168667747e-01, 3.573497744540e-06, 1.0550e+00, 1.5823e-02, - 2DIAGNOSTIC, 35, -5.601170045178e-01, 2.794408376066e-06, 1.0741e+00, 1.9116e-02, - 2DIAGNOSTIC, 36, -5.601170102878e-01, 2.024808704915e-06, 1.0967e+00, 2.2583e-02, - 2DIAGNOSTIC, 37, -5.601170107047e-01, 1.391204521674e-06, 1.1255e+00, 2.8772e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.675043013797e-01, 1.797693134862e+308, 1.5214e+00, 3.9596e-01, - 2DIAGNOSTIC, 2, -4.681940851242e-01, 1.797693134862e+308, 1.6207e+00, 9.9281e-02, - 2DIAGNOSTIC, 3, -4.687890049921e-01, 1.797693134862e+308, 1.7202e+00, 9.9467e-02, - 2DIAGNOSTIC, 4, -4.690672204479e-01, 1.797693134862e+308, 1.8203e+00, 1.0011e-01, - 2DIAGNOSTIC, 5, -4.693151386003e-01, 1.797693134862e+308, 1.9471e+00, 1.2682e-01, - 2DIAGNOSTIC, 6, -4.695359743289e-01, 1.797693134862e+308, 2.0793e+00, 1.3219e-01, - 2DIAGNOSTIC, 7, -4.695875561749e-01, 1.797693134862e+308, 2.1817e+00, 1.0243e-01, - 2DIAGNOSTIC, 8, -4.696522160794e-01, 1.797693134862e+308, 2.2862e+00, 1.0454e-01, - 2DIAGNOSTIC, 9, -4.696969131760e-01, 1.797693134862e+308, 2.3866e+00, 1.0037e-01, - 2DIAGNOSTIC, 10, -4.697217314618e-01, 2.707129836691e-04, 2.4888e+00, 1.0221e-01, - 2DIAGNOSTIC, 11, -4.697542482477e-01, 1.671692807535e-04, 2.5899e+00, 1.0104e-01, - 2DIAGNOSTIC, 12, -4.697965769447e-01, 1.025472555663e-04, 2.7046e+00, 1.1469e-01, - 2DIAGNOSTIC, 13, -4.698752497655e-01, 7.008891004982e-05, 2.8477e+00, 1.4310e-01, - 2DIAGNOSTIC, 14, -4.698816050774e-01, 4.818400199329e-05, 2.9634e+00, 1.1571e-01, - 2DIAGNOSTIC, 15, -4.698886722927e-01, 3.514782439022e-05, 3.0647e+00, 1.0138e-01, - 2DIAGNOSTIC, 16, -4.699033989663e-01, 2.964369637933e-05, 3.1918e+00, 1.2709e-01, - 2DIAGNOSTIC, 17, -4.699041504798e-01, 2.402493874196e-05, 3.3038e+00, 1.1194e-01, - 2DIAGNOSTIC, 18, -4.699078137206e-01, 1.922593017478e-05, 3.4236e+00, 1.1987e-01, - 2DIAGNOSTIC, 19, -4.699265679040e-01, 1.533933467895e-05, 3.5670e+00, 1.4338e-01, - 2DIAGNOSTIC, 20, -4.699318075703e-01, 1.148744661007e-05, 3.6695e+00, 1.0252e-01, - 2DIAGNOSTIC, 21, -4.699349230914e-01, 8.099285947340e-06, 3.7968e+00, 1.2722e-01, - 2DIAGNOSTIC, 22, -4.699353355808e-01, 5.529380621573e-06, 3.9117e+00, 1.1496e-01, - 2DIAGNOSTIC, 23, -4.699354945506e-01, 4.878920415723e-06, 4.0257e+00, 1.1395e-01, - 2DIAGNOSTIC, 24, -4.699329559880e-01, 4.043528052930e-06, 4.1285e+00, 1.0286e-01, - 2DIAGNOSTIC, 25, -4.699332400929e-01, 3.187134296659e-06, 4.2310e+00, 1.0252e-01, - 2DIAGNOSTIC, 26, -4.699334678158e-01, 2.569868931095e-06, 4.3347e+00, 1.0368e-01, - 2DIAGNOSTIC, 27, -4.699336786884e-01, 1.896396698398e-06, 4.4564e+00, 1.2169e-01, - 2DIAGNOSTIC, 28, -4.699336993362e-01, 1.274000674803e-06, 4.5774e+00, 1.2102e-01, - 2DIAGNOSTIC, 29, -4.699338087358e-01, 1.074018142193e-06, 4.9267e+00, 3.4931e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.028563272448e-01, 1.797693134862e+308, 6.2812e+00, 1.3545e+00, - 2DIAGNOSTIC, 2, -4.030311182063e-01, 1.797693134862e+308, 6.8996e+00, 6.1838e-01, - 2DIAGNOSTIC, 3, -4.031630537422e-01, 1.797693134862e+308, 7.6704e+00, 7.7078e-01, - 2DIAGNOSTIC, 4, -4.032290918928e-01, 1.797693134862e+308, 8.5203e+00, 8.4993e-01, - 2DIAGNOSTIC, 5, -4.032530005946e-01, 1.797693134862e+308, 9.1570e+00, 6.3668e-01, - 2DIAGNOSTIC, 6, -4.033183892744e-01, 1.797693134862e+308, 9.7968e+00, 6.3987e-01, - 2DIAGNOSTIC, 7, -4.033657815840e-01, 1.797693134862e+308, 1.0869e+01, 1.0725e+00, - 2DIAGNOSTIC, 8, -4.033672291085e-01, 1.797693134862e+308, 1.1626e+01, 7.5622e-01, - 2DIAGNOSTIC, 9, -4.033668755110e-01, 1.797693134862e+308, 1.2381e+01, 7.5524e-01, - 2DIAGNOSTIC, 10, -4.033664045386e-01, 7.517016208100e-05, 1.3138e+01, 7.5746e-01, - 2DIAGNOSTIC, 11, -4.033663606635e-01, 4.587181093409e-05, 1.4194e+01, 1.0554e+00, - 2DIAGNOSTIC, 12, -4.033662436518e-01, 2.764850030899e-05, 1.4894e+01, 6.9984e-01, - 2DIAGNOSTIC, 13, -4.033661266428e-01, 1.707850304267e-05, 1.5581e+01, 6.8749e-01, - 2DIAGNOSTIC, 14, -4.033660096376e-01, 1.005273841463e-05, 1.6266e+01, 6.8458e-01, - 2DIAGNOSTIC, 15, -4.033655973925e-01, 4.297926865404e-06, 1.6901e+01, 6.3513e-01, - 2DIAGNOSTIC, 16, -4.033656259522e-01, 1.885550232478e-06, 1.7520e+01, 6.1955e-01, - 2DIAGNOSTIC, 17, -4.033656600589e-01, 1.730153015606e-06, 1.8133e+01, 6.1250e-01, - 2DIAGNOSTIC, 18, -4.033655748392e-01, 1.658393536275e-06, 1.8746e+01, 6.1342e-01, - 2DIAGNOSTIC, 19, -4.033656726702e-01, 1.595497408718e-06, 1.9403e+01, 6.5696e-01, - 2DIAGNOSTIC, 20, -4.033656943880e-01, 1.530472061369e-06, 2.0070e+01, 6.6706e-01, - 2DIAGNOSTIC, 21, -4.033656853062e-01, 1.475484564813e-06, 2.0765e+01, 6.9440e-01, - 2DIAGNOSTIC, 22, -4.033654341188e-01, 1.417295290136e-06, 2.1468e+01, 7.0365e-01, - 2DIAGNOSTIC, 23, -4.033656118758e-01, 1.368946047089e-06, 2.2152e+01, 6.8327e-01, - 2DIAGNOSTIC, 24, -4.033655994052e-01, 1.322254358109e-06, 2.2852e+01, 7.0043e-01, - 2DIAGNOSTIC, 25, -4.033656131365e-01, 1.268263726109e-06, 2.3564e+01, 7.1165e-01, - 2DIAGNOSTIC, 26, -4.033654846677e-01, 1.216203922370e-06, 2.4259e+01, 6.9537e-01, - 2DIAGNOSTIC, 27, -4.033654807495e-01, 1.169779465945e-06, 2.4945e+01, 6.8649e-01, - 2DIAGNOSTIC, 28, -4.033655030971e-01, 1.125743064427e-06, 2.5646e+01, 7.0026e-01, - 2DIAGNOSTIC, 29, -4.033653234906e-01, 1.083547667313e-06, 2.6357e+01, 7.1177e-01, - 2DIAGNOSTIC, 30, -4.033652583847e-01, 1.044555854819e-06, 2.7073e+01, 7.1527e-01, - 2DIAGNOSTIC, 31, -4.033651655097e-01, 1.007524364188e-06, 2.7722e+01, 6.4906e-01, - Elapsed time (stage 1): 2.8129e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.999264890198e-01, 1.797693134862e+308, 2.6167e-01, 2.6167e-01, - 1DIAGNOSTIC, 2, -9.106170836283e-01, 1.797693134862e+308, 3.6323e-01, 1.0157e-01, - 1DIAGNOSTIC, 3, -9.188857913200e-01, 1.797693134862e+308, 4.5751e-01, 9.4278e-02, - 1DIAGNOSTIC, 4, -9.256371086518e-01, 1.797693134862e+308, 5.5765e-01, 1.0014e-01, - 1DIAGNOSTIC, 5, -9.311936696837e-01, 1.797693134862e+308, 6.5510e-01, 9.7448e-02, - 1DIAGNOSTIC, 6, -9.350319063717e-01, 1.797693134862e+308, 7.4832e-01, 9.3226e-02, - 1DIAGNOSTIC, 7, -9.386329459549e-01, 1.797693134862e+308, 8.4394e-01, 9.5614e-02, - 1DIAGNOSTIC, 8, -9.414679579315e-01, 1.797693134862e+308, 9.3862e-01, 9.4678e-02, - 1DIAGNOSTIC, 9, -9.441150544483e-01, 1.797693134862e+308, 1.0372e+00, 9.8597e-02, - 1DIAGNOSTIC, 10, -9.465357910194e-01, 3.013793032960e-03, 1.1394e+00, 1.0220e-01, - 1DIAGNOSTIC, 11, -9.487054389277e-01, 2.240023778348e-03, 1.2324e+00, 9.3015e-02, - 1DIAGNOSTIC, 12, -9.506769120523e-01, 1.714932153376e-03, 1.3283e+00, 9.5915e-02, - 1DIAGNOSTIC, 13, -9.523170296076e-01, 1.346495958988e-03, 1.4223e+00, 9.3941e-02, - 1DIAGNOSTIC, 14, -9.537518241588e-01, 1.084960995062e-03, 1.5141e+00, 9.1797e-02, - 1DIAGNOSTIC, 15, -9.548614532927e-01, 8.935965383867e-04, 1.6116e+00, 9.7484e-02, - 1DIAGNOSTIC, 16, -9.558913235288e-01, 7.358135032336e-04, 1.7118e+00, 1.0020e-01, - 1DIAGNOSTIC, 17, -9.555159970732e-01, 5.859956809964e-04, 1.8089e+00, 9.7150e-02, - 1DIAGNOSTIC, 18, -9.560326043880e-01, 4.553015133473e-04, 1.9089e+00, 1.0001e-01, - 1DIAGNOSTIC, 19, -9.556555238074e-01, 3.319324845466e-04, 2.0052e+00, 9.6309e-02, - 1DIAGNOSTIC, 20, -9.564006280734e-01, 2.377588588357e-04, 2.1042e+00, 9.8912e-02, - 1DIAGNOSTIC, 21, -9.560199678592e-01, 1.556727064079e-04, 2.2022e+00, 9.8069e-02, - 1DIAGNOSTIC, 22, -9.567086366070e-01, 1.032487104435e-04, 2.2982e+00, 9.5986e-02, - 1DIAGNOSTIC, 23, -9.563211480627e-01, 6.195677648300e-05, 2.4065e+00, 1.0825e-01, - 1DIAGNOSTIC, 24, -9.569611597167e-01, 4.436714836568e-05, 2.5030e+00, 9.6542e-02, - 1DIAGNOSTIC, 25, -9.565506668912e-01, 3.201351513094e-05, 2.6094e+00, 1.0636e-01, - 1DIAGNOSTIC, 26, -9.570616421266e-01, 3.584435116319e-05, 2.7153e+00, 1.0598e-01, - 1DIAGNOSTIC, 27, -9.566636740631e-01, 2.724242751580e-05, 2.8075e+00, 9.2148e-02, - 1DIAGNOSTIC, 28, -9.572542982159e-01, 2.896538563393e-05, 2.9090e+00, 1.0152e-01, - 1DIAGNOSTIC, 29, -9.568382471727e-01, 1.935711796356e-05, 3.0124e+00, 1.0335e-01, - 1DIAGNOSTIC, 30, -9.572735295305e-01, 2.076439320451e-05, 3.1092e+00, 9.6831e-02, - 1DIAGNOSTIC, 31, -9.568701470890e-01, 1.236113828466e-05, 3.2057e+00, 9.6469e-02, - 1DIAGNOSTIC, 32, -9.574581549056e-01, 1.561653671737e-05, 3.3037e+00, 9.8079e-02, - 1DIAGNOSTIC, 33, -9.570285100822e-01, 9.529576518945e-06, 3.4037e+00, 9.9969e-02, - 1DIAGNOSTIC, 34, -9.573944118636e-01, 1.210428568924e-05, 3.5028e+00, 9.9044e-02, - 1DIAGNOSTIC, 35, -9.570071362331e-01, 6.465885786920e-06, 3.6028e+00, 1.0005e-01, - 1DIAGNOSTIC, 36, -9.575739522013e-01, 9.780502121921e-06, 3.7005e+00, 9.7738e-02, - 1DIAGNOSTIC, 37, -9.571268418775e-01, 4.930193763332e-06, 3.7980e+00, 9.7452e-02, - 1DIAGNOSTIC, 38, -9.573630452718e-01, 6.684880537327e-06, 3.8963e+00, 9.8293e-02, - 1DIAGNOSTIC, 39, -9.569457628425e-01, 1.288251232936e-06, 3.9979e+00, 1.0165e-01, - 1DIAGNOSTIC, 40, -9.574439419947e-01, 3.271756320932e-06, 4.1333e+00, 1.3534e-01, - 1DIAGNOSTIC, 41, -9.570383837690e-01, -1.260491139920e-06, 4.2318e+00, 9.8494e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.092627186366e-01, 1.797693134862e+308, 5.0798e+00, 8.4800e-01, - 1DIAGNOSTIC, 2, -9.133629361397e-01, 1.797693134862e+308, 5.7585e+00, 6.7873e-01, - 1DIAGNOSTIC, 3, -9.170526410697e-01, 1.797693134862e+308, 6.4281e+00, 6.6961e-01, - 1DIAGNOSTIC, 4, -9.201434117534e-01, 1.797693134862e+308, 7.1071e+00, 6.7901e-01, - 1DIAGNOSTIC, 5, -9.228503978360e-01, 1.797693134862e+308, 7.7896e+00, 6.8249e-01, - 1DIAGNOSTIC, 6, -9.252943100626e-01, 1.797693134862e+308, 8.4597e+00, 6.7009e-01, - 1DIAGNOSTIC, 7, -9.272581071556e-01, 1.797693134862e+308, 9.1255e+00, 6.6584e-01, - 1DIAGNOSTIC, 8, -9.287823651616e-01, 1.797693134862e+308, 9.8027e+00, 6.7711e-01, - 1DIAGNOSTIC, 9, -9.301657802531e-01, 1.797693134862e+308, 1.0476e+01, 6.7362e-01, - 1DIAGNOSTIC, 10, -9.312576926941e-01, 1.501488374666e-03, 1.1158e+01, 6.8127e-01, - 1DIAGNOSTIC, 11, -9.321925039964e-01, 1.160423695639e-03, 1.1837e+01, 6.7956e-01, - 1DIAGNOSTIC, 12, -9.330273568703e-01, 8.977738726732e-04, 1.2517e+01, 6.7978e-01, - 1DIAGNOSTIC, 13, -9.337571497081e-01, 6.983851465906e-04, 1.3194e+01, 6.7741e-01, - 1DIAGNOSTIC, 14, -9.344075952423e-01, 5.456091533531e-04, 1.3878e+01, 6.8406e-01, - 1DIAGNOSTIC, 15, -9.349994432516e-01, 4.303593489985e-04, 1.4561e+01, 6.8265e-01, - 1DIAGNOSTIC, 16, -9.355204821797e-01, 3.465296057328e-04, 1.5276e+01, 7.1532e-01, - 1DIAGNOSTIC, 17, -9.359929795167e-01, 2.843800623191e-04, 1.5962e+01, 6.8612e-01, - 1DIAGNOSTIC, 18, -9.364192455490e-01, 2.358441179055e-04, 1.6647e+01, 6.8428e-01, - 1DIAGNOSTIC, 19, -9.368020946717e-01, 1.989100296708e-04, 1.7331e+01, 6.8445e-01, - 1DIAGNOSTIC, 20, -9.371455436006e-01, 1.690758492541e-04, 1.8008e+01, 6.7635e-01, - 1DIAGNOSTIC, 21, -9.374560965477e-01, 1.444223674532e-04, 1.8688e+01, 6.8000e-01, - 1DIAGNOSTIC, 22, -9.377361402096e-01, 1.239976357169e-04, 1.9363e+01, 6.7573e-01, - 1DIAGNOSTIC, 23, -9.379887303396e-01, 1.067948005150e-04, 2.0036e+01, 6.7314e-01, - 1DIAGNOSTIC, 24, -9.382176286145e-01, 9.221170424757e-05, 2.0710e+01, 6.7373e-01, - 1DIAGNOSTIC, 25, -9.384228717240e-01, 7.989306583114e-05, 2.1375e+01, 6.6536e-01, - 1DIAGNOSTIC, 26, -9.386114000360e-01, 6.936711937114e-05, 2.2053e+01, 6.7768e-01, - 1DIAGNOSTIC, 27, -9.387793308008e-01, 6.035931176882e-05, 2.2719e+01, 6.6598e-01, - 1DIAGNOSTIC, 28, -9.389339346019e-01, 5.267194002639e-05, 2.3387e+01, 6.6817e-01, - 1DIAGNOSTIC, 29, -9.390696018321e-01, 4.603959506946e-05, 2.4070e+01, 6.8253e-01, - 1DIAGNOSTIC, 30, -9.391997978771e-01, 4.036126086344e-05, 2.4748e+01, 6.7863e-01, - 1DIAGNOSTIC, 31, -9.393164378765e-01, 3.548134708342e-05, 2.5428e+01, 6.7946e-01, - 1DIAGNOSTIC, 32, -9.394212270147e-01, 3.126470197402e-05, 2.6105e+01, 6.7682e-01, - 1DIAGNOSTIC, 33, -9.395164987330e-01, 2.760856849394e-05, 2.6778e+01, 6.7316e-01, - 1DIAGNOSTIC, 34, -9.396129173706e-01, 2.452154871033e-05, 2.7456e+01, 6.7778e-01, - 1DIAGNOSTIC, 35, -9.396957365138e-01, 2.184494648294e-05, 2.8160e+01, 7.0403e-01, - 1DIAGNOSTIC, 36, -9.397801376221e-01, 1.960934616747e-05, 2.8844e+01, 6.8466e-01, - 1DIAGNOSTIC, 37, -9.398485766907e-01, 1.763384140073e-05, 2.9530e+01, 6.8523e-01, - 1DIAGNOSTIC, 38, -9.399191316075e-01, 1.595095928488e-05, 3.0213e+01, 6.8371e-01, - 1DIAGNOSTIC, 39, -9.399774173304e-01, 1.440757041614e-05, 3.0899e+01, 6.8594e-01, - 1DIAGNOSTIC, 40, -9.400297406475e-01, 1.301732570850e-05, 3.1572e+01, 6.7321e-01, - 1DIAGNOSTIC, 41, -9.400790562789e-01, 1.174695807108e-05, 3.2250e+01, 6.7746e-01, - 1DIAGNOSTIC, 42, -9.401253234337e-01, 1.057169242105e-05, 3.2930e+01, 6.7965e-01, - 1DIAGNOSTIC, 43, -9.401676530525e-01, 9.474028957228e-06, 3.3615e+01, 6.8506e-01, - 1DIAGNOSTIC, 44, -9.402078714028e-01, 8.525999969630e-06, 3.4288e+01, 6.7378e-01, - 1DIAGNOSTIC, 45, -9.402445375994e-01, 7.671061925105e-06, 3.4954e+01, 6.6514e-01, - 1DIAGNOSTIC, 46, -9.402777092701e-01, 6.956544120397e-06, 3.5632e+01, 6.7866e-01, - 1DIAGNOSTIC, 47, -9.403063206149e-01, 6.291699934036e-06, 3.6313e+01, 6.8049e-01, - 1DIAGNOSTIC, 48, -9.403333632820e-01, 5.728487385639e-06, 3.6986e+01, 6.7317e-01, - 1DIAGNOSTIC, 49, -9.403576154121e-01, 5.209077393434e-06, 3.7667e+01, 6.8064e-01, - 1DIAGNOSTIC, 50, -9.403756232760e-01, 4.695475956655e-06, 3.8345e+01, 6.7820e-01, - 1DIAGNOSTIC, 51, -9.403963159324e-01, 4.225896753553e-06, 3.9031e+01, 6.8621e-01, - 1DIAGNOSTIC, 52, -9.404118098644e-01, 3.785344797488e-06, 3.9705e+01, 6.7383e-01, - 1DIAGNOSTIC, 53, -9.404341634014e-01, 3.423892154825e-06, 4.0382e+01, 6.7735e-01, - 1DIAGNOSTIC, 54, -9.404516637554e-01, 3.124889433881e-06, 4.1054e+01, 6.7178e-01, - 1DIAGNOSTIC, 55, -9.404666034788e-01, 2.875194812513e-06, 4.1731e+01, 6.7727e-01, - 1DIAGNOSTIC, 56, -9.404829434270e-01, 2.680329987636e-06, 4.2411e+01, 6.7985e-01, - 1DIAGNOSTIC, 57, -9.405026803558e-01, 2.543957235500e-06, 4.3075e+01, 6.6385e-01, - 1DIAGNOSTIC, 58, -9.405217311212e-01, 2.459005535152e-06, 4.3744e+01, 6.6963e-01, - 1DIAGNOSTIC, 59, -9.405384911879e-01, 2.402047761037e-06, 4.4423e+01, 6.7849e-01, - 1DIAGNOSTIC, 60, -9.405555022430e-01, 2.343514003779e-06, 4.5092e+01, 6.6947e-01, - 1DIAGNOSTIC, 61, -9.405648785589e-01, 2.261008396582e-06, 4.5757e+01, 6.6430e-01, - 1DIAGNOSTIC, 62, -9.405809855896e-01, 2.166574642574e-06, 4.6430e+01, 6.7307e-01, - 1DIAGNOSTIC, 63, -9.405980417713e-01, 2.103288738144e-06, 4.7116e+01, 6.8630e-01, - 1DIAGNOSTIC, 64, -9.406135715176e-01, 2.042743612450e-06, 4.7787e+01, 6.7102e-01, - 1DIAGNOSTIC, 65, -9.406218166759e-01, 1.942371246889e-06, 4.8451e+01, 6.6370e-01, - 1DIAGNOSTIC, 66, -9.406345063807e-01, 1.838250894150e-06, 4.9126e+01, 6.7539e-01, - 1DIAGNOSTIC, 67, -9.406540924328e-01, 1.782852649301e-06, 4.9789e+01, 6.6308e-01, - 1DIAGNOSTIC, 68, -9.406677610576e-01, 1.745656002559e-06, 5.0467e+01, 6.7787e-01, - 1DIAGNOSTIC, 69, -9.406810084873e-01, 1.716681150749e-06, 5.1141e+01, 6.7391e-01, - 1DIAGNOSTIC, 70, -9.406968131389e-01, 1.710173471545e-06, 5.1815e+01, 6.7431e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.947219900846e-01, 1.797693134862e+308, 5.7445e+01, 5.6297e+00, - 1DIAGNOSTIC, 2, -8.976916523123e-01, 1.797693134862e+308, 6.2809e+01, 5.3643e+00, - 1DIAGNOSTIC, 3, -9.007328138035e-01, 1.797693134862e+308, 6.8235e+01, 5.4259e+00, - 1DIAGNOSTIC, 4, -9.035199129638e-01, 1.797693134862e+308, 7.3638e+01, 5.4027e+00, - 1DIAGNOSTIC, 5, -9.058786306240e-01, 1.797693134862e+308, 7.9038e+01, 5.3996e+00, - 1DIAGNOSTIC, 6, -9.079126593794e-01, 1.797693134862e+308, 8.4410e+01, 5.3724e+00, - 1DIAGNOSTIC, 7, -9.096637817537e-01, 1.797693134862e+308, 8.9859e+01, 5.4490e+00, - 1DIAGNOSTIC, 8, -9.111976614007e-01, 1.797693134862e+308, 9.5279e+01, 5.4203e+00, - 1DIAGNOSTIC, 9, -9.124541872292e-01, 1.797693134862e+308, 1.0075e+02, 5.4689e+00, - 1DIAGNOSTIC, 10, -9.135785223468e-01, 1.330667557457e-03, 1.0616e+02, 5.4101e+00, - 1DIAGNOSTIC, 11, -9.144746610190e-01, 1.058882310833e-03, 1.1160e+02, 5.4463e+00, - 1DIAGNOSTIC, 12, -9.152905365752e-01, 8.356134293577e-04, 1.1700e+02, 5.3969e+00, - 1DIAGNOSTIC, 13, -9.160364150793e-01, 6.617729404963e-04, 1.2245e+02, 5.4494e+00, - 1DIAGNOSTIC, 14, -9.167317243240e-01, 5.299585753984e-04, 1.2788e+02, 5.4273e+00, - 1DIAGNOSTIC, 15, -9.173732849454e-01, 4.294644463438e-04, 1.3331e+02, 5.4301e+00, - 1DIAGNOSTIC, 16, -9.179721010508e-01, 3.532566412235e-04, 1.3871e+02, 5.4038e+00, - 1DIAGNOSTIC, 17, -9.185383753528e-01, 2.958025500925e-04, 1.4418e+02, 5.4718e+00, - 1DIAGNOSTIC, 18, -9.190679453381e-01, 2.529889874371e-04, 1.4963e+02, 5.4452e+00, - 1DIAGNOSTIC, 19, -9.195657450014e-01, 2.198599141807e-04, 1.5504e+02, 5.4119e+00, - 1DIAGNOSTIC, 20, -9.200335063217e-01, 1.943409521844e-04, 1.6044e+02, 5.3966e+00, - 1DIAGNOSTIC, 21, -9.204798187052e-01, 1.729993199845e-04, 1.6590e+02, 5.4662e+00, - 1DIAGNOSTIC, 22, -9.209048955347e-01, 1.549607015795e-04, 1.7135e+02, 5.4498e+00, - 1DIAGNOSTIC, 23, -9.213022465940e-01, 1.394249044226e-04, 1.7678e+02, 5.4251e+00, - 1DIAGNOSTIC, 24, -9.216827859766e-01, 1.260411613359e-04, 1.8220e+02, 5.4186e+00, - 1DIAGNOSTIC, 25, -9.220464223548e-01, 1.143856970163e-04, 1.8764e+02, 5.4446e+00, - 1DIAGNOSTIC, 26, -9.223924543020e-01, 1.041578212674e-04, 1.9312e+02, 5.4731e+00, - 1DIAGNOSTIC, 27, -9.227267721676e-01, 9.524202784203e-05, 1.9856e+02, 5.4435e+00, - 1DIAGNOSTIC, 28, -9.230476559436e-01, 8.742127532491e-05, 2.0398e+02, 5.4204e+00, - 1DIAGNOSTIC, 29, -9.233562467144e-01, 8.053095021179e-05, 2.0946e+02, 5.4820e+00, - 1DIAGNOSTIC, 30, -9.236535770463e-01, 7.441696450127e-05, 2.1489e+02, 5.4270e+00, - 1DIAGNOSTIC, 31, -9.239418826900e-01, 6.902435430203e-05, 2.2032e+02, 5.4298e+00, - 1DIAGNOSTIC, 32, -9.242216217519e-01, 6.428272211934e-05, 2.2581e+02, 5.4901e+00, - 1DIAGNOSTIC, 33, -9.244796942240e-01, 5.991378021976e-05, 2.3126e+02, 5.4480e+00, - 1DIAGNOSTIC, 34, -9.247215086271e-01, 5.581771805716e-05, 2.3668e+02, 5.4202e+00, - 1DIAGNOSTIC, 35, -9.249435700247e-01, 5.187070211461e-05, 2.4218e+02, 5.4997e+00, - 1DIAGNOSTIC, 36, -9.251462090054e-01, 4.796555399040e-05, 2.4762e+02, 5.4454e+00, - 1DIAGNOSTIC, 37, -9.253396624065e-01, 4.416014958200e-05, 2.5307e+02, 5.4500e+00, - 1DIAGNOSTIC, 38, -9.255125113504e-01, 4.040877583333e-05, 2.5852e+02, 5.4476e+00, - 1DIAGNOSTIC, 39, -9.256832818308e-01, 3.684415439529e-05, 2.6401e+02, 5.4873e+00, - 1DIAGNOSTIC, 40, -9.258380352948e-01, 3.348068203151e-05, 2.6945e+02, 5.4488e+00, - 1DIAGNOSTIC, 41, -9.259827011547e-01, 3.039336965235e-05, 2.7495e+02, 5.4945e+00, - 1DIAGNOSTIC, 42, -9.261209244749e-01, 2.767128407789e-05, 2.8036e+02, 5.4102e+00, - 1DIAGNOSTIC, 43, -9.262526777972e-01, 2.527725109159e-05, 2.8582e+02, 5.4631e+00, - 1DIAGNOSTIC, 44, -9.263775269827e-01, 2.319470284622e-05, 2.9122e+02, 5.3957e+00, - 1DIAGNOSTIC, 45, -9.264986222343e-01, 2.138785712345e-05, 2.9670e+02, 5.4774e+00, - 1DIAGNOSTIC, 46, -9.266136048501e-01, 1.979104947115e-05, 3.0211e+02, 5.4174e+00, - 1DIAGNOSTIC, 47, -9.267196768640e-01, 1.838289998872e-05, 3.0757e+02, 5.4566e+00, - 1DIAGNOSTIC, 48, -9.268210299333e-01, 1.708245370012e-05, 3.1299e+02, 5.4203e+00, - 1DIAGNOSTIC, 49, -9.269190287038e-01, 1.593837763618e-05, 3.1842e+02, 5.4338e+00, - 1DIAGNOSTIC, 50, -9.270142361849e-01, 1.490159679252e-05, 3.2385e+02, 5.4224e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.958383708137e-01, 1.797693134862e+308, 3.6952e+02, 4.5671e+01, - 1DIAGNOSTIC, 2, -8.969780782196e-01, 1.797693134862e+308, 4.1391e+02, 4.4392e+01, - 1DIAGNOSTIC, 3, -8.984165473920e-01, 1.797693134862e+308, 4.5825e+02, 4.4340e+01, - 1DIAGNOSTIC, 4, -8.998855875574e-01, 1.797693134862e+308, 5.0256e+02, 4.4311e+01, - 1DIAGNOSTIC, 5, -9.014060300842e-01, 1.797693134862e+308, 5.4682e+02, 4.4262e+01, - 1DIAGNOSTIC, 6, -9.029837684543e-01, 1.797693134862e+308, 5.9098e+02, 4.4159e+01, - 1DIAGNOSTIC, 7, -9.044481334558e-01, 1.797693134862e+308, 6.3534e+02, 4.4355e+01, - 1DIAGNOSTIC, 8, -9.057611651716e-01, 1.797693134862e+308, 6.7966e+02, 4.4321e+01, - 1DIAGNOSTIC, 9, -9.069765239903e-01, 1.797693134862e+308, 7.2480e+02, 4.5147e+01, - 1DIAGNOSTIC, 10, -9.080934911414e-01, 9.022786631810e-04, 7.6967e+02, 4.4869e+01, - 1DIAGNOSTIC, 11, -9.089906715399e-01, 7.963010703045e-04, 8.1396e+02, 4.4286e+01, - 1DIAGNOSTIC, 12, -9.097714472604e-01, 6.866090016282e-04, 8.5828e+02, 4.4323e+01, - 1DIAGNOSTIC, 13, -9.104348639340e-01, 5.824233941352e-04, 9.0279e+02, 4.4507e+01, - 1DIAGNOSTIC, 14, -9.109880371383e-01, 4.853794391998e-04, 9.4807e+02, 4.5276e+01, - 1DIAGNOSTIC, 15, -9.114494328814e-01, 3.981812110033e-04, 9.9266e+02, 4.4594e+01, - 1DIAGNOSTIC, 16, -9.118465945126e-01, 3.239218102552e-04, 1.0374e+03, 4.4750e+01, - 1DIAGNOSTIC, 17, -9.121016864472e-01, 2.601907881476e-04, 1.0819e+03, 4.4443e+01, - 1DIAGNOSTIC, 18, -9.123327771586e-01, 2.063288995368e-04, 1.1269e+03, 4.5048e+01, - 1DIAGNOSTIC, 19, -9.125247922841e-01, 1.621354410198e-04, 1.1719e+03, 4.4976e+01, - 1DIAGNOSTIC, 20, -9.127016785735e-01, 1.275208626519e-04, 1.2169e+03, 4.5069e+01, - Elapsed time (stage 2): 1217 - - -Total elapsed time: 1270 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:56:50 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:56:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:56:53 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:56:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:00 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1526 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:04 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1615 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:04 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/anat/sub-PNC004_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:07 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:07 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1662 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:07 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1668 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:07 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:27 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:30 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:30 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:31 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:32 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:35 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:35 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:36 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:37 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/surf/sub-PNC004_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:39 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:57:49 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02/sub-PNC004_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC004 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:00 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC004 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:00 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC004 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 2483 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:03 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:03 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc/sub-PNC004_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/xfm/sub-PNC004_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 2525 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:04 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:04 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC004_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 70.583 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/logs/proc_func_18-03-2024-22537.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:10 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC004 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-02/QC/sub-PNC004_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4781_micapipe_proc-func_sub-PNC004_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC004* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 70.633 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC004_ses-02 -========================reprocessing without filter=================== -sub-PNC004_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC004 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC004 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC004 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC004 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:19 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 12:58:19 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-1_bold.nii.gz is 34.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:00:29 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:02:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:02:55 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.32 (mm) at sub-brick 47 -++ Max delta displ in automask = 1.14 (mm) at sub-brick 47 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:16:07 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:16:26 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-2_bold.nii.gz is 34.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:18:42 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:20:58 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC004/ses-03/func/sub-PNC004_ses-03_task-rest_echo-3_bold.nii.gz is 34.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:23:15 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.489 -1.591 2.790 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.2 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.593 -1.842 4.376 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 73.8 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:28:10 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:28:39 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55a25cca76f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [104.354, 68.1223, -106.575] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a25cb1e730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a25ccbe320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55a25ccaafa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [73.5664, 122.148, -125.342] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a25ccb0e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a25d4bb230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55a25d4b95c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [104.354, 68.1223, -106.575] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a25ccad3f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a25dfe5450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55a25d4b7da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [73.5664, 122.148, -125.342] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a25ccb4360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a25e7df780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.492844403833e-01, 1.797693134862e+308, 4.5986e-02, 4.5986e-02, - 2DIAGNOSTIC, 2, -7.519166954467e-01, 1.797693134862e+308, 4.7570e-02, 1.5838e-03, - 2DIAGNOSTIC, 3, -7.550263209916e-01, 1.797693134862e+308, 4.9382e-02, 1.8120e-03, - 2DIAGNOSTIC, 4, -7.559456131552e-01, 1.797693134862e+308, 5.0948e-02, 1.5659e-03, - 2DIAGNOSTIC, 5, -7.565178525435e-01, 1.797693134862e+308, 5.2528e-02, 1.5800e-03, - 2DIAGNOSTIC, 6, -7.584995622187e-01, 1.797693134862e+308, 5.4037e-02, 1.5090e-03, - 2DIAGNOSTIC, 7, -7.611040249975e-01, 1.797693134862e+308, 5.5548e-02, 1.5111e-03, - 2DIAGNOSTIC, 8, -7.670635262734e-01, 1.797693134862e+308, 5.6792e-02, 1.2441e-03, - 2DIAGNOSTIC, 9, -7.746968022835e-01, 1.797693134862e+308, 5.8502e-02, 1.7099e-03, - 2DIAGNOSTIC, 10, -7.802906134409e-01, 2.322074322797e-03, 6.0230e-02, 1.7281e-03, - 2DIAGNOSTIC, 11, -7.881416482448e-01, 2.602349113646e-03, 6.1884e-02, 1.6539e-03, - 2DIAGNOSTIC, 12, -7.916570710116e-01, 2.785784761807e-03, 6.4037e-02, 2.1532e-03, - 2DIAGNOSTIC, 13, -7.981619184121e-01, 2.960135151724e-03, 6.5449e-02, 1.4122e-03, - 2DIAGNOSTIC, 14, -8.026057079888e-01, 2.977234357441e-03, 6.6903e-02, 1.4539e-03, - 2DIAGNOSTIC, 15, -8.079952454430e-01, 2.864163149551e-03, 6.8789e-02, 1.8859e-03, - 2DIAGNOSTIC, 16, -8.138547297901e-01, 2.681549639310e-03, 7.1247e-02, 2.4581e-03, - 2DIAGNOSTIC, 17, -8.141301991770e-01, 2.334457922318e-03, 7.2707e-02, 1.4601e-03, - 2DIAGNOSTIC, 18, -8.175200070120e-01, 2.001194185547e-03, 7.4132e-02, 1.4250e-03, - 2DIAGNOSTIC, 19, -8.195628359061e-01, 1.702175303601e-03, 7.5624e-02, 1.4920e-03, - 2DIAGNOSTIC, 20, -8.203095814074e-01, 1.387628864253e-03, 7.7149e-02, 1.5249e-03, - 2DIAGNOSTIC, 21, -8.211324331238e-01, 1.124628655170e-03, 7.8710e-02, 1.5612e-03, - 2DIAGNOSTIC, 22, -8.222290515739e-01, 8.564295995314e-04, 8.0197e-02, 1.4870e-03, - 2DIAGNOSTIC, 23, -8.266291417674e-01, 7.026238988876e-04, 8.1651e-02, 1.4541e-03, - 2DIAGNOSTIC, 24, -8.314554378589e-01, 6.318338426154e-04, 8.4517e-02, 2.8660e-03, - 2DIAGNOSTIC, 25, -8.336617999117e-01, 6.139038149424e-04, 8.6025e-02, 1.5080e-03, - 2DIAGNOSTIC, 26, -8.344284145877e-01, 6.326244935230e-04, 8.7548e-02, 1.5230e-03, - 2DIAGNOSTIC, 27, -8.368960089664e-01, 6.265397974904e-04, 8.9031e-02, 1.4830e-03, - 2DIAGNOSTIC, 28, -8.432154859568e-01, 6.834213561714e-04, 9.1456e-02, 2.4250e-03, - 2DIAGNOSTIC, 29, -8.446083135201e-01, 7.110231584243e-04, 9.2925e-02, 1.4689e-03, - 2DIAGNOSTIC, 30, -8.451794668009e-01, 6.862066851847e-04, 9.4434e-02, 1.5092e-03, - 2DIAGNOSTIC, 31, -8.468416096647e-01, 6.286786617775e-04, 9.5930e-02, 1.4961e-03, - 2DIAGNOSTIC, 32, -8.480548111048e-01, 5.397655116353e-04, 9.7373e-02, 1.4431e-03, - 2DIAGNOSTIC, 33, -8.541467256093e-01, 5.152234087589e-04, 9.9334e-02, 1.9610e-03, - 2DIAGNOSTIC, 34, -8.550039012712e-01, 5.003300017424e-04, 1.0130e-01, 1.9622e-03, - 2DIAGNOSTIC, 35, -8.556839513272e-01, 4.695552254062e-04, 1.0279e-01, 1.4889e-03, - 2DIAGNOSTIC, 36, -8.565614104978e-01, 4.129360172811e-04, 1.0428e-01, 1.4911e-03, - 2DIAGNOSTIC, 37, -8.587024462728e-01, 3.620718177994e-04, 1.0645e-01, 2.1749e-03, - 2DIAGNOSTIC, 38, -8.591997664632e-01, 3.410371350552e-04, 1.0794e-01, 1.4889e-03, - 2DIAGNOSTIC, 39, -8.595420165883e-01, 3.043996827451e-04, 1.0944e-01, 1.4992e-03, - 2DIAGNOSTIC, 40, -8.600843908710e-01, 2.511915338553e-04, 1.1138e-01, 1.9360e-03, - 2DIAGNOSTIC, 41, -8.610519832235e-01, 1.994116188778e-04, 1.1699e-01, 5.6129e-03, - 2DIAGNOSTIC, 42, -8.610519289891e-01, 1.396047615283e-04, 1.1852e-01, 1.5359e-03, - 2DIAGNOSTIC, 43, -8.610520747055e-01, 1.187311125038e-04, 1.2002e-01, 1.4908e-03, - 2DIAGNOSTIC, 44, -8.610523210566e-01, 9.461177197605e-05, 1.2145e-01, 1.4348e-03, - 2DIAGNOSTIC, 45, -8.610527374132e-01, 6.785531086001e-05, 1.2295e-01, 1.4980e-03, - 2DIAGNOSTIC, 46, -8.610534408394e-01, 4.200383582728e-05, 1.2472e-01, 1.7681e-03, - 2DIAGNOSTIC, 47, -8.610546285340e-01, 2.909272986312e-05, 1.2619e-01, 1.4751e-03, - 2DIAGNOSTIC, 48, -8.610566318056e-01, 1.771500148760e-05, 1.2772e-01, 1.5271e-03, - 2DIAGNOSTIC, 49, -8.610600047698e-01, 7.601934162844e-06, 1.2922e-01, 1.5051e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.790184066918e-01, 1.797693134862e+308, 1.7512e-01, 4.5894e-02, - 2DIAGNOSTIC, 2, -4.793100654670e-01, 1.797693134862e+308, 1.7781e-01, 2.6951e-03, - 2DIAGNOSTIC, 3, -4.807364832701e-01, 1.797693134862e+308, 1.8046e-01, 2.6510e-03, - 2DIAGNOSTIC, 4, -4.825053434803e-01, 1.797693134862e+308, 1.8302e-01, 2.5530e-03, - 2DIAGNOSTIC, 5, -4.836719732314e-01, 1.797693134862e+308, 1.8524e-01, 2.2261e-03, - 2DIAGNOSTIC, 6, -4.862534453354e-01, 1.797693134862e+308, 1.8741e-01, 2.1660e-03, - 2DIAGNOSTIC, 7, -4.903423634492e-01, 1.797693134862e+308, 1.8949e-01, 2.0778e-03, - 2DIAGNOSTIC, 8, -5.073931799043e-01, 1.797693134862e+308, 1.9195e-01, 2.4672e-03, - 2DIAGNOSTIC, 9, -5.404877255314e-01, 1.797693134862e+308, 1.9436e-01, 2.4090e-03, - 2DIAGNOSTIC, 10, -5.776190340356e-01, 9.927051855795e-03, 1.9719e-01, 2.8319e-03, - 2DIAGNOSTIC, 11, -5.788449149004e-01, 1.204203710635e-02, 1.9942e-01, 2.2271e-03, - 2DIAGNOSTIC, 12, -5.801100967058e-01, 1.279924022562e-02, 2.0256e-01, 3.1362e-03, - 2DIAGNOSTIC, 13, -5.811900467044e-01, 1.239258874633e-02, 2.0478e-01, 2.2249e-03, - 2DIAGNOSTIC, 14, -5.818554098819e-01, 1.100113582596e-02, 2.0707e-01, 2.2891e-03, - 2DIAGNOSTIC, 15, -5.837146580912e-01, 8.906758437761e-03, 2.0936e-01, 2.2871e-03, - 2DIAGNOSTIC, 16, -6.037921190339e-01, 7.044805670521e-03, 2.1201e-01, 2.6560e-03, - 2DIAGNOSTIC, 17, -6.140000192907e-01, 5.224033478318e-03, 2.1459e-01, 2.5799e-03, - 2DIAGNOSTIC, 18, -6.330541122157e-01, 4.183546417719e-03, 2.1806e-01, 3.4640e-03, - 2DIAGNOSTIC, 19, -6.347239363272e-01, 3.804015468426e-03, 2.2059e-01, 2.5320e-03, - 2DIAGNOSTIC, 20, -6.349419576259e-01, 4.085738817352e-03, 2.2442e-01, 3.8249e-03, - 2DIAGNOSTIC, 21, -6.349277078085e-01, 3.986832384102e-03, 2.2701e-01, 2.5940e-03, - 2DIAGNOSTIC, 22, -6.350935000294e-01, 3.554943832269e-03, 2.2927e-01, 2.2571e-03, - 2DIAGNOSTIC, 23, -6.351225480698e-01, 2.858497885269e-03, 2.3180e-01, 2.5361e-03, - 2DIAGNOSTIC, 24, -6.351422566555e-01, 1.980541735425e-03, 2.3400e-01, 2.2020e-03, - 2DIAGNOSTIC, 25, -6.351124222941e-01, 1.029753162461e-03, 2.3622e-01, 2.2199e-03, - 2DIAGNOSTIC, 26, -6.351555610185e-01, 4.485994130781e-04, 2.3844e-01, 2.2159e-03, - 2DIAGNOSTIC, 27, -6.352655359785e-01, 5.295509205959e-05, 2.4062e-01, 2.1820e-03, - 2DIAGNOSTIC, 28, -6.355206362952e-01, 2.332488114883e-05, 2.4285e-01, 2.2302e-03, - 2DIAGNOSTIC, 29, -6.360051355953e-01, 3.025996168742e-05, 2.4539e-01, 2.5342e-03, - 2DIAGNOSTIC, 30, -6.366463850219e-01, 4.789793558873e-05, 2.4793e-01, 2.5399e-03, - 2DIAGNOSTIC, 31, -6.375212035501e-01, 7.323337579993e-05, 2.5017e-01, 2.2421e-03, - 2DIAGNOSTIC, 32, -6.388460634857e-01, 1.125125697815e-04, 2.5241e-01, 2.2461e-03, - 2DIAGNOSTIC, 33, -6.402184904003e-01, 1.589278814427e-04, 2.5553e-01, 3.1171e-03, - 2DIAGNOSTIC, 34, -6.416857033495e-01, 2.083410013568e-04, 2.5805e-01, 2.5151e-03, - 2DIAGNOSTIC, 35, -6.426295363915e-01, 2.474184749725e-04, 2.6029e-01, 2.2461e-03, - 2DIAGNOSTIC, 36, -6.539600389294e-01, 4.127651108256e-04, 2.6282e-01, 2.5260e-03, - 2DIAGNOSTIC, 37, -6.573149594441e-01, 5.700118109771e-04, 2.6503e-01, 2.2130e-03, - 2DIAGNOSTIC, 38, -6.593975238030e-01, 6.938238736046e-04, 2.6762e-01, 2.5921e-03, - 2DIAGNOSTIC, 39, -6.645549928433e-01, 8.154149145020e-04, 2.7220e-01, 4.5750e-03, - 2DIAGNOSTIC, 40, -6.645818578342e-01, 8.593226930900e-04, 2.7443e-01, 2.2290e-03, - 2DIAGNOSTIC, 41, -6.648666189730e-01, 8.313032213391e-04, 2.7705e-01, 2.6240e-03, - 2DIAGNOSTIC, 42, -6.651457062009e-01, 7.433233945330e-04, 2.7957e-01, 2.5170e-03, - 2DIAGNOSTIC, 43, -6.652068335701e-01, 6.057543423868e-04, 2.8184e-01, 2.2709e-03, - 2DIAGNOSTIC, 44, -6.653988859240e-01, 4.359589522093e-04, 2.8471e-01, 2.8682e-03, - 2DIAGNOSTIC, 45, -6.654258397941e-01, 2.402428676862e-04, 2.8729e-01, 2.5802e-03, - 2DIAGNOSTIC, 46, -6.650493944661e-01, 1.427724567759e-04, 2.8952e-01, 2.2280e-03, - 2DIAGNOSTIC, 47, -6.650119972218e-01, 6.941909584145e-05, 2.9178e-01, 2.2612e-03, - 2DIAGNOSTIC, 48, -6.651141418116e-01, 1.265074838834e-05, 2.9405e-01, 2.2678e-03, - 2DIAGNOSTIC, 49, -6.651536943313e-01, 6.655332361074e-06, 2.9658e-01, 2.5361e-03, - 2DIAGNOSTIC, 50, -6.652048387535e-01, 1.040069249732e-06, 2.9915e-01, 2.5651e-03, - 2DIAGNOSTIC, 51, -6.657379381025e-01, 3.106346124000e-06, 3.0141e-01, 2.2590e-03, - 2DIAGNOSTIC, 52, -6.660268471952e-01, 9.817684343796e-06, 3.0515e-01, 3.7479e-03, - 2DIAGNOSTIC, 53, -6.660658862080e-01, 1.612933535124e-05, 3.0739e-01, 2.2402e-03, - 2DIAGNOSTIC, 54, -6.660178811001e-01, 2.197041137701e-05, 3.0968e-01, 2.2840e-03, - 2DIAGNOSTIC, 55, -6.660388563604e-01, 2.606875988408e-05, 3.1198e-01, 2.2972e-03, - 2DIAGNOSTIC, 56, -6.660676241794e-01, 2.464235348891e-05, 3.1423e-01, 2.2590e-03, - 2DIAGNOSTIC, 57, -6.661424822352e-01, 2.118568993626e-05, 3.1648e-01, 2.2449e-03, - 2DIAGNOSTIC, 58, -6.661950063896e-01, 1.714782050803e-05, 3.1994e-01, 3.4640e-03, - 2DIAGNOSTIC, 59, -6.662164407862e-01, 1.222040166166e-05, 3.2257e-01, 2.6269e-03, - 2DIAGNOSTIC, 60, -6.662365300491e-01, 6.817456381782e-06, 3.2487e-01, 2.3038e-03, - 2DIAGNOSTIC, 61, -6.661188933557e-01, 4.055738359304e-06, 3.2771e-01, 2.8329e-03, - 2DIAGNOSTIC, 62, -6.668362986539e-01, 8.483032129317e-06, 3.3025e-01, 2.5480e-03, - 2DIAGNOSTIC, 63, -6.670310081904e-01, 1.354107284243e-05, 3.3315e-01, 2.8999e-03, - 2DIAGNOSTIC, 64, -6.669427671720e-01, 1.621891049198e-05, 3.3574e-01, 2.5880e-03, - 2DIAGNOSTIC, 65, -6.670392057413e-01, 1.824548325206e-05, 3.3802e-01, 2.2800e-03, - 2DIAGNOSTIC, 66, -6.669831854959e-01, 1.829508729907e-05, 3.4026e-01, 2.2399e-03, - 2DIAGNOSTIC, 67, -6.669377545086e-01, 1.675008325490e-05, 3.4280e-01, 2.5339e-03, - 2DIAGNOSTIC, 68, -6.670348127837e-01, 1.465062464572e-05, 3.4534e-01, 2.5389e-03, - 2DIAGNOSTIC, 69, -6.670783107287e-01, 1.171881658577e-05, 3.4789e-01, 2.5580e-03, - 2DIAGNOSTIC, 70, -6.670637046590e-01, 7.916336141892e-06, 3.5104e-01, 3.1440e-03, - 2DIAGNOSTIC, 71, -6.670734406015e-01, 2.718458119885e-06, 3.5353e-01, 2.4941e-03, - 2DIAGNOSTIC, 72, -6.671092321974e-01, 2.167030098726e-06, 3.5574e-01, 2.2111e-03, - 2DIAGNOSTIC, 73, -6.670580439258e-01, 2.357296374838e-06, 3.5831e-01, 2.5680e-03, - 2DIAGNOSTIC, 74, -6.670592494065e-01, 1.808527369697e-06, 3.6575e-01, 7.4389e-03, - 2DIAGNOSTIC, 75, -6.670592494041e-01, 1.741247021757e-06, 3.7300e-01, 7.2491e-03, - 2DIAGNOSTIC, 76, -6.670592494041e-01, 1.231245589668e-06, 3.7567e-01, 2.6751e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.950674042247e-01, 1.797693134862e+308, 4.4607e-01, 7.0395e-02, - 2DIAGNOSTIC, 2, -4.954764239216e-01, 1.797693134862e+308, 4.5784e-01, 1.1769e-02, - 2DIAGNOSTIC, 3, -4.962026570693e-01, 1.797693134862e+308, 4.7060e-01, 1.2766e-02, - 2DIAGNOSTIC, 4, -4.970692432060e-01, 1.797693134862e+308, 4.8296e-01, 1.2354e-02, - 2DIAGNOSTIC, 5, -4.980268534313e-01, 1.797693134862e+308, 4.9502e-01, 1.2065e-02, - 2DIAGNOSTIC, 6, -5.008695655786e-01, 1.797693134862e+308, 5.0679e-01, 1.1767e-02, - 2DIAGNOSTIC, 7, -5.023584327355e-01, 1.797693134862e+308, 5.2185e-01, 1.5061e-02, - 2DIAGNOSTIC, 8, -5.026011262739e-01, 1.797693134862e+308, 5.4020e-01, 1.8347e-02, - 2DIAGNOSTIC, 9, -5.026227788304e-01, 1.797693134862e+308, 5.5173e-01, 1.1537e-02, - 2DIAGNOSTIC, 10, -5.027394587837e-01, 1.218258569557e-03, 5.6373e-01, 1.2000e-02, - 2DIAGNOSTIC, 11, -5.028067345271e-01, 1.002083785663e-03, 5.7534e-01, 1.1604e-02, - 2DIAGNOSTIC, 12, -5.029339744567e-01, 7.564983963786e-04, 5.8746e-01, 1.2121e-02, - 2DIAGNOSTIC, 13, -5.031142998406e-01, 5.214658425443e-04, 5.9995e-01, 1.2490e-02, - 2DIAGNOSTIC, 14, -5.032547178665e-01, 3.150135348442e-04, 6.1652e-01, 1.6574e-02, - 2DIAGNOSTIC, 15, -5.034179448828e-01, 1.477847065967e-04, 6.3026e-01, 1.3733e-02, - 2DIAGNOSTIC, 16, -5.034911148944e-01, 9.018119709116e-05, 6.4264e-01, 1.2382e-02, - 2DIAGNOSTIC, 17, -5.035746593753e-01, 8.356224562915e-05, 6.5378e-01, 1.1138e-02, - 2DIAGNOSTIC, 18, -5.036676610323e-01, 8.068426840221e-05, 6.6545e-01, 1.1669e-02, - 2DIAGNOSTIC, 19, -5.039214653512e-01, 7.888229274726e-05, 6.8098e-01, 1.5530e-02, - 2DIAGNOSTIC, 20, -5.041540430028e-01, 7.982287994561e-05, 6.9743e-01, 1.6455e-02, - 2DIAGNOSTIC, 21, -5.041596755639e-01, 7.526323271108e-05, 7.1111e-01, 1.3681e-02, - 2DIAGNOSTIC, 22, -5.041554081246e-01, 6.750488485863e-05, 7.2340e-01, 1.2285e-02, - 2DIAGNOSTIC, 23, -5.041526477276e-01, 5.862582552429e-05, 7.3451e-01, 1.1110e-02, - 2DIAGNOSTIC, 24, -5.041395976019e-01, 4.794693587046e-05, 7.4676e-01, 1.2255e-02, - 2DIAGNOSTIC, 25, -5.041437944686e-01, 3.744653354767e-05, 7.6012e-01, 1.3356e-02, - 2DIAGNOSTIC, 26, -5.041299154816e-01, 2.568180439285e-05, 7.7211e-01, 1.1995e-02, - 2DIAGNOSTIC, 27, -5.041342838333e-01, 1.442620588250e-05, 7.8336e-01, 1.1251e-02, - 2DIAGNOSTIC, 28, -5.041372024221e-01, 4.576804227802e-06, 7.9383e-01, 1.0465e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.213462366487e-01, 1.797693134862e+308, 9.9810e-01, 2.0427e-01, - Elapsed time (stage 0): 1.0253e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.733850163530e-01, 1.797693134862e+308, 3.5543e-02, 3.5543e-02, - 2DIAGNOSTIC, 2, -9.747175923945e-01, 1.797693134862e+308, 3.6823e-02, 1.2801e-03, - 2DIAGNOSTIC, 3, -9.762845249903e-01, 1.797693134862e+308, 3.8089e-02, 1.2660e-03, - 2DIAGNOSTIC, 4, -9.784722412058e-01, 1.797693134862e+308, 3.9371e-02, 1.2820e-03, - 2DIAGNOSTIC, 5, -9.819517928078e-01, 1.797693134862e+308, 4.0623e-02, 1.2519e-03, - 2DIAGNOSTIC, 6, -1.003383450025e+00, 1.797693134862e+308, 4.2121e-02, 1.4980e-03, - 2DIAGNOSTIC, 7, -1.035709993109e+00, 1.797693134862e+308, 4.4000e-02, 1.8790e-03, - 2DIAGNOSTIC, 8, -1.043954608387e+00, 1.797693134862e+308, 4.5290e-02, 1.2898e-03, - 2DIAGNOSTIC, 9, -1.051325495261e+00, 1.797693134862e+308, 4.6787e-02, 1.4970e-03, - 2DIAGNOSTIC, 10, -1.058839006915e+00, 6.493704406789e-03, 4.8524e-02, 1.7371e-03, - 2DIAGNOSTIC, 11, -1.062590283167e+00, 6.264136744555e-03, 5.0016e-02, 1.4920e-03, - 2DIAGNOSTIC, 12, -1.062367602971e+00, 5.529392609958e-03, 5.1499e-02, 1.4832e-03, - 2DIAGNOSTIC, 13, -1.064610626457e+00, 4.500497788436e-03, 5.3224e-02, 1.7250e-03, - 2DIAGNOSTIC, 14, -1.062348424208e+00, 3.226052777982e-03, 5.5476e-02, 2.2519e-03, - 2DIAGNOSTIC, 15, -1.062492394677e+00, 1.897697925960e-03, 5.7234e-02, 1.7579e-03, - 2DIAGNOSTIC, 16, -1.060764420287e+00, 8.941713907517e-04, 5.8728e-02, 1.4939e-03, - 2DIAGNOSTIC, 17, -1.062717302085e+00, 4.859675848845e-04, 6.0489e-02, 1.7610e-03, - 2DIAGNOSTIC, 18, -1.064054057607e+00, 2.238969553115e-04, 6.2908e-02, 2.4190e-03, - 2DIAGNOSTIC, 19, -1.063061684722e+00, 5.924564965293e-05, 6.5381e-02, 2.4731e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.922478810457e-01, 1.797693134862e+308, 1.0817e-01, 4.2785e-02, - 2DIAGNOSTIC, 2, -6.926204450122e-01, 1.797693134862e+308, 1.1124e-01, 3.0780e-03, - 2DIAGNOSTIC, 3, -6.951105690799e-01, 1.797693134862e+308, 1.1460e-01, 3.3550e-03, - 2DIAGNOSTIC, 4, -6.985516517538e-01, 1.797693134862e+308, 1.1774e-01, 3.1390e-03, - 2DIAGNOSTIC, 5, -7.030581871003e-01, 1.797693134862e+308, 1.2057e-01, 2.8360e-03, - 2DIAGNOSTIC, 6, -7.091715260573e-01, 1.797693134862e+308, 1.2299e-01, 2.4121e-03, - 2DIAGNOSTIC, 7, -7.180924323806e-01, 1.797693134862e+308, 1.2565e-01, 2.6660e-03, - 2DIAGNOSTIC, 8, -7.277014760164e-01, 1.797693134862e+308, 1.2830e-01, 2.6450e-03, - 2DIAGNOSTIC, 9, -7.287718476151e-01, 1.797693134862e+308, 1.3072e-01, 2.4250e-03, - 2DIAGNOSTIC, 10, -7.312673472879e-01, 4.152931855875e-03, 1.3500e-01, 4.2820e-03, - 2DIAGNOSTIC, 11, -7.315999769520e-01, 3.806410078671e-03, 1.3825e-01, 3.2439e-03, - 2DIAGNOSTIC, 12, -7.330074594234e-01, 3.233201976168e-03, 1.4128e-01, 3.0360e-03, - 2DIAGNOSTIC, 13, -7.347033768567e-01, 2.582595998754e-03, 1.4432e-01, 3.0360e-03, - 2DIAGNOSTIC, 14, -7.357151324176e-01, 1.919392869707e-03, 1.4774e-01, 3.4230e-03, - 2DIAGNOSTIC, 15, -7.358468353940e-01, 1.296008137968e-03, 1.5084e-01, 3.0940e-03, - 2DIAGNOSTIC, 16, -7.357349900314e-01, 7.795635527161e-04, 1.5356e-01, 2.7280e-03, - 2DIAGNOSTIC, 17, -7.357159074207e-01, 4.550560513365e-04, 1.5597e-01, 2.4090e-03, - 2DIAGNOSTIC, 18, -7.357307542055e-01, 3.356602940684e-04, 1.5850e-01, 2.5258e-03, - 2DIAGNOSTIC, 19, -7.358625147989e-01, 2.216200992110e-04, 1.6160e-01, 3.1021e-03, - 2DIAGNOSTIC, 20, -7.358660519695e-01, 1.484507836627e-04, 1.6469e-01, 3.0930e-03, - 2DIAGNOSTIC, 21, -7.358288395295e-01, 7.423439280398e-05, 1.6721e-01, 2.5139e-03, - 2DIAGNOSTIC, 22, -7.357323674292e-01, 2.296361814945e-05, 1.6971e-01, 2.5041e-03, - 2DIAGNOSTIC, 23, -7.357998709013e-01, 3.837497024484e-06, 1.7221e-01, 2.4939e-03, - 2DIAGNOSTIC, 24, -7.358420299253e-01, 3.140242035904e-06, 1.7488e-01, 2.6729e-03, - 2DIAGNOSTIC, 25, -7.359311872203e-01, 5.807437586332e-06, 1.7758e-01, 2.7039e-03, - 2DIAGNOSTIC, 26, -7.359157193633e-01, 5.967487490523e-06, 1.7997e-01, 2.3901e-03, - 2DIAGNOSTIC, 27, -7.359333797711e-01, 5.721510926350e-06, 1.8294e-01, 2.9690e-03, - 2DIAGNOSTIC, 28, -7.359716453569e-01, 5.745785999448e-06, 1.8571e-01, 2.7690e-03, - 2DIAGNOSTIC, 29, -7.359271382816e-01, 6.450198362595e-06, 1.8799e-01, 2.2769e-03, - 2DIAGNOSTIC, 30, -7.358992985647e-01, 6.304249656051e-06, 1.9054e-01, 2.5480e-03, - 2DIAGNOSTIC, 31, -7.359496577105e-01, 5.901800894673e-06, 1.9283e-01, 2.2938e-03, - 2DIAGNOSTIC, 32, -7.359676512387e-01, 4.071015651246e-06, 1.9549e-01, 2.6550e-03, - 2DIAGNOSTIC, 33, -7.360551492136e-01, 3.881004370786e-06, 1.9787e-01, 2.3851e-03, - 2DIAGNOSTIC, 34, -7.360719027603e-01, 4.066166441594e-06, 2.0060e-01, 2.7249e-03, - 2DIAGNOSTIC, 35, -7.361777117250e-01, 6.147374671160e-06, 2.0300e-01, 2.4009e-03, - 2DIAGNOSTIC, 36, -7.361584304721e-01, 7.205705309724e-06, 2.0540e-01, 2.4030e-03, - 2DIAGNOSTIC, 37, -7.368761541848e-01, 1.534935541170e-05, 2.0821e-01, 2.8100e-03, - 2DIAGNOSTIC, 38, -7.373673038387e-01, 2.691942581014e-05, 2.1051e-01, 2.3000e-03, - 2DIAGNOSTIC, 39, -7.379002853935e-01, 4.023662344007e-05, 2.1338e-01, 2.8710e-03, - 2DIAGNOSTIC, 40, -7.386891618023e-01, 5.654301569564e-05, 2.1624e-01, 2.8620e-03, - 2DIAGNOSTIC, 41, -7.390716197245e-01, 7.074211747404e-05, 2.1856e-01, 2.3181e-03, - 2DIAGNOSTIC, 42, -7.398633503664e-01, 8.501749345209e-05, 2.2085e-01, 2.2860e-03, - 2DIAGNOSTIC, 43, -7.402948949704e-01, 9.511093491755e-05, 2.2441e-01, 3.5629e-03, - 2DIAGNOSTIC, 44, -7.404661261669e-01, 9.736696071181e-05, 2.2686e-01, 2.4540e-03, - 2DIAGNOSTIC, 45, -7.406217417453e-01, 9.265992758573e-05, 2.2925e-01, 2.3901e-03, - 2DIAGNOSTIC, 46, -7.407322342893e-01, 8.001988856960e-05, 2.3165e-01, 2.3949e-03, - 2DIAGNOSTIC, 47, -7.407447909080e-01, 6.629488557649e-05, 2.3406e-01, 2.4071e-03, - 2DIAGNOSTIC, 48, -7.408597022334e-01, 5.171893152935e-05, 2.3650e-01, 2.4450e-03, - 2DIAGNOSTIC, 49, -7.409714210866e-01, 3.787710405023e-05, 2.3918e-01, 2.6779e-03, - 2DIAGNOSTIC, 50, -7.412645447543e-01, 2.943876867588e-05, 2.4188e-01, 2.7001e-03, - 2DIAGNOSTIC, 51, -7.414671267334e-01, 2.286006950016e-05, 2.4459e-01, 2.7120e-03, - 2DIAGNOSTIC, 52, -7.412516654915e-01, 1.863992815847e-05, 2.4798e-01, 3.3889e-03, - 2DIAGNOSTIC, 53, -7.409290561016e-01, 1.372152234503e-05, 2.5070e-01, 2.7251e-03, - 2DIAGNOSTIC, 54, -7.408603355009e-01, 8.491345036044e-06, 2.5316e-01, 2.4600e-03, - 2DIAGNOSTIC, 55, -7.408514017277e-01, 3.640767837869e-06, 2.5574e-01, 2.5761e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.627882083170e-01, 1.797693134862e+308, 3.2077e-01, 6.5032e-02, - 2DIAGNOSTIC, 2, -5.630494049334e-01, 1.797693134862e+308, 3.3505e-01, 1.4275e-02, - 2DIAGNOSTIC, 3, -5.634828358079e-01, 1.797693134862e+308, 3.4777e-01, 1.2724e-02, - 2DIAGNOSTIC, 4, -5.641396381037e-01, 1.797693134862e+308, 3.5945e-01, 1.1683e-02, - 2DIAGNOSTIC, 5, -5.647435581269e-01, 1.797693134862e+308, 3.7234e-01, 1.2881e-02, - 2DIAGNOSTIC, 6, -5.663855702656e-01, 1.797693134862e+308, 3.8369e-01, 1.1355e-02, - 2DIAGNOSTIC, 7, -5.689914397032e-01, 1.797693134862e+308, 3.9518e-01, 1.1491e-02, - 2DIAGNOSTIC, 8, -5.705590910742e-01, 1.797693134862e+308, 4.0731e-01, 1.2131e-02, - 2DIAGNOSTIC, 9, -5.729788661595e-01, 1.797693134862e+308, 4.2382e-01, 1.6508e-02, - 2DIAGNOSTIC, 10, -5.738150982130e-01, 1.366654847000e-03, 4.3596e-01, 1.2135e-02, - 2DIAGNOSTIC, 11, -5.741542285950e-01, 1.344645197202e-03, 4.5004e-01, 1.4087e-02, - 2DIAGNOSTIC, 12, -5.743821757389e-01, 1.226042402551e-03, 4.6628e-01, 1.6241e-02, - 2DIAGNOSTIC, 13, -5.745234148238e-01, 1.036840632587e-03, 4.7930e-01, 1.3020e-02, - 2DIAGNOSTIC, 14, -5.746666151866e-01, 8.095350698444e-04, 4.9174e-01, 1.2439e-02, - 2DIAGNOSTIC, 15, -5.749260974309e-01, 5.674236721400e-04, 5.0864e-01, 1.6898e-02, - 2DIAGNOSTIC, 16, -5.750338724079e-01, 3.576506033697e-04, 5.2046e-01, 1.1820e-02, - 2DIAGNOSTIC, 17, -5.750895220705e-01, 2.179149265122e-04, 5.3309e-01, 1.2627e-02, - 2DIAGNOSTIC, 18, -5.751435886783e-01, 1.172826906473e-04, 5.5078e-01, 1.7697e-02, - 2DIAGNOSTIC, 19, -5.751692779232e-01, 8.021582213442e-05, 5.6345e-01, 1.2670e-02, - 2DIAGNOSTIC, 20, -5.751714006197e-01, 6.022597389432e-05, 5.7585e-01, 1.2396e-02, - 2DIAGNOSTIC, 21, -5.752072312236e-01, 4.547502909005e-05, 5.8836e-01, 1.2514e-02, - 2DIAGNOSTIC, 22, -5.752356958917e-01, 3.376456866409e-05, 6.0325e-01, 1.4891e-02, - 2DIAGNOSTIC, 23, -5.753010494619e-01, 2.450667843989e-05, 6.1757e-01, 1.4312e-02, - 2DIAGNOSTIC, 24, -5.753306125888e-01, 1.729638798682e-05, 6.3066e-01, 1.3096e-02, - 2DIAGNOSTIC, 25, -5.753402878341e-01, 1.449117503988e-05, 6.4452e-01, 1.3853e-02, - 2DIAGNOSTIC, 26, -5.753485985097e-01, 1.287745953111e-05, 6.5906e-01, 1.4543e-02, - 2DIAGNOSTIC, 27, -5.753459028909e-01, 1.123011394318e-05, 6.7072e-01, 1.1663e-02, - 2DIAGNOSTIC, 28, -5.753464138321e-01, 9.702213002026e-06, 6.8366e-01, 1.2935e-02, - 2DIAGNOSTIC, 29, -5.753419001057e-01, 7.837049188095e-06, 6.9837e-01, 1.4715e-02, - 2DIAGNOSTIC, 30, -5.753424198818e-01, 5.506716109910e-06, 7.1259e-01, 1.4215e-02, - 2DIAGNOSTIC, 31, -5.753409795734e-01, 3.461515980047e-06, 7.2607e-01, 1.3481e-02, - 2DIAGNOSTIC, 32, -5.753393885353e-01, 1.710027765299e-06, 7.3951e-01, 1.3438e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.769184088591e-01, 1.797693134862e+308, 9.2201e-01, 1.8250e-01, - Elapsed time (stage 1): 9.4207e-01 - - -Total elapsed time: 1.9679e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:28:42 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 52 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 67 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 87.93% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 87.93% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[22606 3240 21351 8884 15078 2026 1036 1909 647 477 1470 197 - 2686 458 891 178 1087 0 572 0 395 642 0 754 - 260 773 0 166 0 207 0 216 234 0 0 175 - 0 0 0 0 0 0 0 0 0 0 0 0 - 0 190 0 0] -[112754 43236 38348 49848 40060 21985 17637 22589 18948 15721 - 17576 10825 11361 9621 12125 8234 7420 5914 8905 5019 - 5390 4376 7010 5090 3160 2288 2071 2283 1501 1952 - 2281 1059 1184 2007 1719 1690 1219 1516 850 841 - 1363 989 1553 1521 517 632 954 1455 863 1266 - 595 820] -[ 1708 0 0 6622 0 18660 5748 6942 374 163 4999 0 - 0 913 425 0 176 167 948 8572 9810 0 0 7472 - 688 0 459 206 954 0 21343 0 0 0 0 0 - 217 188 9705 210 0 189 0 0 449 0 0 0 - 0 0 0 170] -[ 11259 2132 760 10838 573 5745 56330 228 18020 6643 - 6608 1263 1020 8514 10141 5216 9637 7521 15136 752 - 1788 1203 992 642 2669 1487 3541 710 366 4674 - 143632 490 3849 1141 1278 3561 938 6145 846 5036 - 545 3586 876 10353 1235 1316 1786 4892 4787 3170 - 4315 4470] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:39:32 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:39:34 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:25 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:25 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:25 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:35 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:38 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC004 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:43:52 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:44:18 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:46:09 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:46:11 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:47:32 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:47:33 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55e773c2ad20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.0155, 122.597, -125.791] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e773aa1730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9097013010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55e773c2e020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.803, 68.5715, -107.025] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e773c340c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9093954010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55e773c44840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.0155, 122.597, -125.791] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e773c30890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f908ec80010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55e773c483e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.803, 68.5715, -107.025] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e773c37130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f908b5c1010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.418059489437e-01, 1.797693134862e+308, 2.4532e-01, 2.4532e-01, - 2DIAGNOSTIC, 2, -4.440187991706e-01, 1.797693134862e+308, 2.4678e-01, 1.4520e-03, - 2DIAGNOSTIC, 3, -4.471408800478e-01, 1.797693134862e+308, 2.4814e-01, 1.3640e-03, - 2DIAGNOSTIC, 4, -4.484784588729e-01, 1.797693134862e+308, 2.4951e-01, 1.3700e-03, - 2DIAGNOSTIC, 5, -4.519955600685e-01, 1.797693134862e+308, 2.5090e-01, 1.3890e-03, - 2DIAGNOSTIC, 6, -4.611474319561e-01, 1.797693134862e+308, 2.5225e-01, 1.3509e-03, - 2DIAGNOSTIC, 7, -4.709424171490e-01, 1.797693134862e+308, 2.5366e-01, 1.4141e-03, - 2DIAGNOSTIC, 8, -4.976428646973e-01, 1.797693134862e+308, 2.5513e-01, 1.4641e-03, - 2DIAGNOSTIC, 9, -5.502673568922e-01, 1.797693134862e+308, 2.5682e-01, 1.6940e-03, - 2DIAGNOSTIC, 10, -5.621534469778e-01, 1.551348816176e-02, 2.5906e-01, 2.2418e-03, - 2DIAGNOSTIC, 11, -5.680398704241e-01, 1.696392952765e-02, 2.6083e-01, 1.7641e-03, - 2DIAGNOSTIC, 12, -5.771581903052e-01, 1.717909588046e-02, 2.6255e-01, 1.7171e-03, - 2DIAGNOSTIC, 13, -5.912724258043e-01, 1.652006413369e-02, 2.6541e-01, 2.8651e-03, - 2DIAGNOSTIC, 14, -5.939609452688e-01, 1.460268669858e-02, 2.6729e-01, 1.8811e-03, - 2DIAGNOSTIC, 15, -5.955710006993e-01, 1.185407796910e-02, 2.6892e-01, 1.6320e-03, - 2DIAGNOSTIC, 16, -6.070463073198e-01, 9.150002979033e-03, 2.7084e-01, 1.9119e-03, - 2DIAGNOSTIC, 17, -6.099034527851e-01, 6.367816430472e-03, 2.7251e-01, 1.6739e-03, - 2DIAGNOSTIC, 18, -6.172460750793e-01, 4.327236731802e-03, 2.7540e-01, 2.8882e-03, - 2DIAGNOSTIC, 19, -6.169041893024e-01, 3.595072208071e-03, 2.7707e-01, 1.6680e-03, - 2DIAGNOSTIC, 20, -6.173221008261e-01, 2.946261799580e-03, 2.7873e-01, 1.6689e-03, - 2DIAGNOSTIC, 21, -6.174227410060e-01, 2.240958528764e-03, 2.8070e-01, 1.9681e-03, - 2DIAGNOSTIC, 22, -6.174241583501e-01, 1.605251327827e-03, 2.8264e-01, 1.9400e-03, - 2DIAGNOSTIC, 23, -6.174345638954e-01, 1.200682101482e-03, 2.8431e-01, 1.6630e-03, - 2DIAGNOSTIC, 24, -6.174428596414e-01, 7.824206782340e-04, 2.8596e-01, 1.6551e-03, - 2DIAGNOSTIC, 25, -6.174556867979e-01, 3.580187402839e-04, 2.8815e-01, 2.1880e-03, - 2DIAGNOSTIC, 26, -6.174582804231e-01, 1.617546382285e-04, 2.8984e-01, 1.6952e-03, - 2DIAGNOSTIC, 27, -6.174757368266e-01, 1.671682026744e-05, 2.9234e-01, 2.4941e-03, - 2DIAGNOSTIC, 28, -6.174877346345e-01, 1.497792010077e-05, 2.9409e-01, 1.7531e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.608147529749e-01, 1.797693134862e+308, 5.3256e-01, 2.3847e-01, - 2DIAGNOSTIC, 2, -4.602379445227e-01, 1.797693134862e+308, 5.3490e-01, 2.3398e-03, - 2DIAGNOSTIC, 3, -4.619672712283e-01, 1.797693134862e+308, 5.3710e-01, 2.1970e-03, - 2DIAGNOSTIC, 4, -4.659135355344e-01, 1.797693134862e+308, 5.3929e-01, 2.1961e-03, - 2DIAGNOSTIC, 5, -4.664329437813e-01, 1.797693134862e+308, 5.4161e-01, 2.3222e-03, - 2DIAGNOSTIC, 6, -4.673806483190e-01, 1.797693134862e+308, 5.4378e-01, 2.1679e-03, - 2DIAGNOSTIC, 7, -4.731954444958e-01, 1.797693134862e+308, 5.4634e-01, 2.5549e-03, - 2DIAGNOSTIC, 8, -4.834426183460e-01, 1.797693134862e+308, 5.4908e-01, 2.7409e-03, - 2DIAGNOSTIC, 9, -4.858823244147e-01, 1.797693134862e+308, 5.5228e-01, 3.2048e-03, - 2DIAGNOSTIC, 10, -4.887955490509e-01, 4.164318982144e-03, 5.5618e-01, 3.8970e-03, - 2DIAGNOSTIC, 11, -4.892461449692e-01, 4.119519050427e-03, 5.5872e-01, 2.5449e-03, - 2DIAGNOSTIC, 12, -4.901493931758e-01, 3.726485408308e-03, 5.6093e-01, 2.2011e-03, - 2DIAGNOSTIC, 13, -4.960926628467e-01, 3.397433045259e-03, 5.6313e-01, 2.2089e-03, - 2DIAGNOSTIC, 14, -5.033192670651e-01, 3.274773484445e-03, 5.6537e-01, 2.2349e-03, - 2DIAGNOSTIC, 15, -5.136316841943e-01, 3.295800170439e-03, 5.6798e-01, 2.6052e-03, - 2DIAGNOSTIC, 16, -5.432152343510e-01, 4.116443282944e-03, 5.7057e-01, 2.5990e-03, - 2DIAGNOSTIC, 17, -5.296191280223e-01, 4.164183993698e-03, 5.7314e-01, 2.5630e-03, - 2DIAGNOSTIC, 18, -5.443839702681e-01, 4.647065456393e-03, 5.7560e-01, 2.4650e-03, - 2DIAGNOSTIC, 19, -5.478381788909e-01, 4.812269635820e-03, 5.7930e-01, 3.6981e-03, - 2DIAGNOSTIC, 20, -5.491535066125e-01, 4.624900166396e-03, 5.8173e-01, 2.4309e-03, - 2DIAGNOSTIC, 21, -5.488039768925e-01, 4.029447121938e-03, 5.8378e-01, 2.0449e-03, - 2DIAGNOSTIC, 22, -5.489851107330e-01, 3.152792299337e-03, 5.8585e-01, 2.0771e-03, - 2DIAGNOSTIC, 23, -5.491667369046e-01, 2.221126653171e-03, 5.8794e-01, 2.0871e-03, - 2DIAGNOSTIC, 24, -5.503268233588e-01, 1.356464528238e-03, 5.9096e-01, 3.0239e-03, - 2DIAGNOSTIC, 25, -5.520320840589e-01, 6.909622216133e-04, 5.9305e-01, 2.0878e-03, - 2DIAGNOSTIC, 26, -5.522337027652e-01, 6.693637942612e-04, 5.9522e-01, 2.1670e-03, - 2DIAGNOSTIC, 27, -5.540613492085e-01, 3.371160752000e-04, 5.9765e-01, 2.4359e-03, - 2DIAGNOSTIC, 28, -5.561467617031e-01, 3.307549438346e-04, 6.0111e-01, 3.4571e-03, - 2DIAGNOSTIC, 29, -5.564719523501e-01, 3.640688623769e-04, 6.0337e-01, 2.2631e-03, - 2DIAGNOSTIC, 30, -5.572125304770e-01, 3.990715630935e-04, 6.0595e-01, 2.5711e-03, - 2DIAGNOSTIC, 31, -5.581434827480e-01, 4.046534655718e-04, 6.0852e-01, 2.5749e-03, - 2DIAGNOSTIC, 32, -5.586315349815e-01, 3.829263547925e-04, 6.1080e-01, 2.2769e-03, - 2DIAGNOSTIC, 33, -5.586948460829e-01, 3.298293007161e-04, 6.1305e-01, 2.2521e-03, - 2DIAGNOSTIC, 34, -5.591805140474e-01, 2.751732284812e-04, 6.1567e-01, 2.6162e-03, - 2DIAGNOSTIC, 35, -5.593189541405e-01, 2.270333179397e-04, 6.1837e-01, 2.7070e-03, - 2DIAGNOSTIC, 36, -5.593840268780e-01, 1.637398979496e-04, 6.2152e-01, 3.1462e-03, - 2DIAGNOSTIC, 37, -5.594459419014e-01, 1.156756447850e-04, 6.2393e-01, 2.4090e-03, - 2DIAGNOSTIC, 38, -5.595530971810e-01, 9.084789786536e-05, 6.2830e-01, 4.3700e-03, - 2DIAGNOSTIC, 39, -5.595569887974e-01, 6.321554187613e-05, 6.3087e-01, 2.5671e-03, - 2DIAGNOSTIC, 40, -5.595844211928e-01, 4.119514122911e-05, 6.3307e-01, 2.2080e-03, - 2DIAGNOSTIC, 41, -5.595131860200e-01, 2.770399728468e-05, 6.3522e-01, 2.1479e-03, - 2DIAGNOSTIC, 42, -5.595566682218e-01, 1.923972053662e-05, 6.3738e-01, 2.1579e-03, - 2DIAGNOSTIC, 43, -5.595998403453e-01, 1.057918901634e-05, 6.3952e-01, 2.1441e-03, - 2DIAGNOSTIC, 44, -5.597604357542e-01, 9.234604126350e-06, 6.4170e-01, 2.1739e-03, - 2DIAGNOSTIC, 45, -5.598420244408e-01, 9.732519677497e-06, 6.4381e-01, 2.1122e-03, - 2DIAGNOSTIC, 46, -5.599858570557e-01, 1.179197335660e-05, 6.4618e-01, 2.3689e-03, - 2DIAGNOSTIC, 47, -5.601731832876e-01, 1.549716702469e-05, 6.4891e-01, 2.7299e-03, - 2DIAGNOSTIC, 48, -5.602756925969e-01, 1.990785185964e-05, 6.5136e-01, 2.4490e-03, - 2DIAGNOSTIC, 49, -5.602367560268e-01, 2.188182599407e-05, 6.5363e-01, 2.2702e-03, - 2DIAGNOSTIC, 50, -5.603527037975e-01, 2.333816056518e-05, 6.5635e-01, 2.7261e-03, - 2DIAGNOSTIC, 51, -5.603686766923e-01, 2.194704206660e-05, 6.5885e-01, 2.5010e-03, - 2DIAGNOSTIC, 52, -5.603802329719e-01, 1.911706933065e-05, 6.6136e-01, 2.5010e-03, - 2DIAGNOSTIC, 53, -5.607041078862e-01, 1.829302746822e-05, 6.6473e-01, 3.3751e-03, - 2DIAGNOSTIC, 54, -5.605025066658e-01, 1.533867886615e-05, 6.6780e-01, 3.0739e-03, - 2DIAGNOSTIC, 55, -5.605068239799e-01, 1.198882908447e-05, 6.6996e-01, 2.1570e-03, - 2DIAGNOSTIC, 56, -5.605698061017e-01, 9.604304102771e-06, 6.7214e-01, 2.1820e-03, - 2DIAGNOSTIC, 57, -5.604993612257e-01, 7.454480650031e-06, 6.7427e-01, 2.1231e-03, - 2DIAGNOSTIC, 58, -5.606689917384e-01, 7.215278190417e-06, 6.7671e-01, 2.4450e-03, - 2DIAGNOSTIC, 59, -5.607748942981e-01, 6.898091088569e-06, 6.7918e-01, 2.4688e-03, - 2DIAGNOSTIC, 60, -5.613803539032e-01, 1.237048340300e-05, 6.8163e-01, 2.4478e-03, - 2DIAGNOSTIC, 61, -5.614493540743e-01, 1.713602550471e-05, 6.8440e-01, 2.7750e-03, - 2DIAGNOSTIC, 62, -5.612253273025e-01, 1.829939535003e-05, 6.8656e-01, 2.1591e-03, - 2DIAGNOSTIC, 63, -5.619158314427e-01, 2.638782204144e-05, 6.8949e-01, 2.9299e-03, - 2DIAGNOSTIC, 64, -5.651827345685e-01, 5.675842902343e-05, 6.9166e-01, 2.1720e-03, - 2DIAGNOSTIC, 65, -5.678752638890e-01, 1.017847646862e-04, 6.9386e-01, 2.1932e-03, - 2DIAGNOSTIC, 66, -5.699404808118e-01, 1.524097188124e-04, 6.9664e-01, 2.7859e-03, - 2DIAGNOSTIC, 67, -5.706042036515e-01, 1.917356618071e-04, 6.9941e-01, 2.7640e-03, - 2DIAGNOSTIC, 68, -5.709541209251e-01, 2.156867831150e-04, 7.0155e-01, 2.1439e-03, - 2DIAGNOSTIC, 69, -5.711216830733e-01, 2.198293022674e-04, 7.0369e-01, 2.1360e-03, - 2DIAGNOSTIC, 70, -5.721156910283e-01, 2.143341638409e-04, 7.0615e-01, 2.4590e-03, - 2DIAGNOSTIC, 71, -5.724561898641e-01, 1.914163141370e-04, 7.0864e-01, 2.4951e-03, - 2DIAGNOSTIC, 72, -5.727357744421e-01, 1.515204823493e-04, 7.1174e-01, 3.0961e-03, - 2DIAGNOSTIC, 73, -5.733885099644e-01, 1.076721136375e-04, 7.1417e-01, 2.4362e-03, - 2DIAGNOSTIC, 74, -5.732118105593e-01, 7.616264293161e-05, 7.1631e-01, 2.1410e-03, - 2DIAGNOSTIC, 75, -5.731320754956e-01, 5.612122508079e-05, 7.1877e-01, 2.4590e-03, - 2DIAGNOSTIC, 76, -5.731637911110e-01, 4.559521561182e-05, 7.2166e-01, 2.8880e-03, - 2DIAGNOSTIC, 77, -5.729767797496e-01, 3.419837006811e-05, 7.2409e-01, 2.4259e-03, - 2DIAGNOSTIC, 78, -5.728926538561e-01, 2.166686229509e-05, 7.2642e-01, 2.3341e-03, - 2DIAGNOSTIC, 79, -5.730303995450e-01, 9.312360770728e-06, 7.2874e-01, 2.3141e-03, - 2DIAGNOSTIC, 80, -5.730840840263e-01, 3.234391547178e-06, 7.3143e-01, 2.6941e-03, - 2DIAGNOSTIC, 81, -5.734845539101e-01, 1.779889562632e-06, 7.3409e-01, 2.6560e-03, - 2DIAGNOSTIC, 82, -5.734398626704e-01, 1.547388407146e-06, 7.3671e-01, 2.6219e-03, - 2DIAGNOSTIC, 83, -5.734349558576e-01, 5.351885902628e-06, 7.4048e-01, 3.7730e-03, - 2DIAGNOSTIC, 84, -5.733327754166e-01, 6.879895266548e-06, 7.4355e-01, 3.0701e-03, - 2DIAGNOSTIC, 85, -5.733330585460e-01, 7.225849579302e-06, 7.4659e-01, 3.0420e-03, - 2DIAGNOSTIC, 86, -5.733331035376e-01, 7.085669908643e-06, 7.4912e-01, 2.5251e-03, - 2DIAGNOSTIC, 87, -5.733331168391e-01, 5.201628194661e-06, 7.5171e-01, 2.5902e-03, - 2DIAGNOSTIC, 88, -5.733331219601e-01, 2.423733076365e-06, 7.5421e-01, 2.5060e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.409694980938e-01, 1.797693134862e+308, 9.9584e-01, 2.4163e-01, - 2DIAGNOSTIC, 2, -4.411703774421e-01, 1.797693134862e+308, 1.0079e+00, 1.2040e-02, - 2DIAGNOSTIC, 3, -4.416656579826e-01, 1.797693134862e+308, 1.0199e+00, 1.1974e-02, - 2DIAGNOSTIC, 4, -4.420976919913e-01, 1.797693134862e+308, 1.0321e+00, 1.2268e-02, - 2DIAGNOSTIC, 5, -4.432660246579e-01, 1.797693134862e+308, 1.0463e+00, 1.4179e-02, - 2DIAGNOSTIC, 6, -4.443011908398e-01, 1.797693134862e+308, 1.0640e+00, 1.7708e-02, - 2DIAGNOSTIC, 7, -4.453537513064e-01, 1.797693134862e+308, 1.0788e+00, 1.4748e-02, - 2DIAGNOSTIC, 8, -4.458950950727e-01, 1.797693134862e+308, 1.0913e+00, 1.2504e-02, - 2DIAGNOSTIC, 9, -4.466913240513e-01, 1.797693134862e+308, 1.1056e+00, 1.4365e-02, - 2DIAGNOSTIC, 10, -4.475716303078e-01, 1.033090082254e-03, 1.1185e+00, 1.2886e-02, - 2DIAGNOSTIC, 11, -4.498098848008e-01, 1.074060844891e-03, 1.1334e+00, 1.4890e-02, - 2DIAGNOSTIC, 12, -4.516809606750e-01, 1.119211604830e-03, 1.1502e+00, 1.6811e-02, - 2DIAGNOSTIC, 13, -4.517858896330e-01, 1.085578206498e-03, 1.1640e+00, 1.3826e-02, - 2DIAGNOSTIC, 14, -4.529186815747e-01, 1.031089636328e-03, 1.1768e+00, 1.2765e-02, - 2DIAGNOSTIC, 15, -4.545560137662e-01, 1.007454541523e-03, 1.1916e+00, 1.4773e-02, - 2DIAGNOSTIC, 16, -4.581677205786e-01, 1.075203598241e-03, 1.2042e+00, 1.2656e-02, - 2DIAGNOSTIC, 17, -4.972422302669e-01, 2.516976395008e-03, 1.2212e+00, 1.6933e-02, - 2DIAGNOSTIC, 18, -5.353390468287e-01, 4.840090935047e-03, 1.2349e+00, 1.3707e-02, - 2DIAGNOSTIC, 19, -5.406302820115e-01, 6.610179576564e-03, 1.2490e+00, 1.4157e-02, - 2DIAGNOSTIC, 20, -5.456554161021e-01, 7.768277365761e-03, 1.2626e+00, 1.3540e-02, - 2DIAGNOSTIC, 21, -5.479762086547e-01, 8.218671217544e-03, 1.2800e+00, 1.7391e-02, - 2DIAGNOSTIC, 22, -5.492135307331e-01, 7.925287231596e-03, 1.2919e+00, 1.1923e-02, - 2DIAGNOSTIC, 23, -5.536044242357e-01, 7.021555268564e-03, 1.3060e+00, 1.4079e-02, - 2DIAGNOSTIC, 24, -5.562506626881e-01, 5.651335726629e-03, 1.3201e+00, 1.4170e-02, - 2DIAGNOSTIC, 25, -5.572354244707e-01, 3.962796577303e-03, 1.3323e+00, 1.2141e-02, - 2DIAGNOSTIC, 26, -5.578719637574e-01, 2.136331130642e-03, 1.3494e+00, 1.7082e-02, - 2DIAGNOSTIC, 27, -5.591595724575e-01, 1.115911284906e-03, 1.3632e+00, 1.3832e-02, - 2DIAGNOSTIC, 28, -5.597815183890e-01, 8.730749027100e-04, 1.3754e+00, 1.2250e-02, - 2DIAGNOSTIC, 29, -5.605496962094e-01, 6.848914865918e-04, 1.3909e+00, 1.5483e-02, - 2DIAGNOSTIC, 30, -5.615776823380e-01, 5.624290176629e-04, 1.4031e+00, 1.2211e-02, - 2DIAGNOSTIC, 31, -5.617485971820e-01, 4.425555047218e-04, 1.4180e+00, 1.4869e-02, - 2DIAGNOSTIC, 32, -5.619128867541e-01, 3.129106260776e-04, 1.4333e+00, 1.5261e-02, - 2DIAGNOSTIC, 33, -5.619516976000e-01, 2.378106638194e-04, 1.4453e+00, 1.2050e-02, - 2DIAGNOSTIC, 34, -5.625263477329e-01, 1.985699369170e-04, 1.4574e+00, 1.2106e-02, - 2DIAGNOSTIC, 35, -5.631694948264e-01, 1.689007236544e-04, 1.4695e+00, 1.2102e-02, - 2DIAGNOSTIC, 36, -5.652351283801e-01, 1.667474763032e-04, 1.4895e+00, 2.0005e-02, - 2DIAGNOSTIC, 37, -5.660234072472e-01, 1.798376345295e-04, 1.5023e+00, 1.2805e-02, - 2DIAGNOSTIC, 38, -5.666139441035e-01, 1.930175188623e-04, 1.5146e+00, 1.2279e-02, - 2DIAGNOSTIC, 39, -5.675118305113e-01, 2.108055232249e-04, 1.5286e+00, 1.3985e-02, - 2DIAGNOSTIC, 40, -5.681769147014e-01, 2.307285549907e-04, 1.5409e+00, 1.2322e-02, - 2DIAGNOSTIC, 41, -5.691614325003e-01, 2.428319112459e-04, 1.5586e+00, 1.7684e-02, - 2DIAGNOSTIC, 42, -5.725715852485e-01, 2.780241903719e-04, 1.5707e+00, 1.2129e-02, - 2DIAGNOSTIC, 43, -5.738880811223e-01, 3.014734272225e-04, 1.5831e+00, 1.2410e-02, - 2DIAGNOSTIC, 44, -5.748789232088e-01, 3.148316861657e-04, 1.5984e+00, 1.5232e-02, - 2DIAGNOSTIC, 45, -5.776029292153e-01, 3.383279762065e-04, 1.6182e+00, 1.9799e-02, - 2DIAGNOSTIC, 46, -5.806878895446e-01, 3.886710549840e-04, 1.6314e+00, 1.3227e-02, - 2DIAGNOSTIC, 47, -5.810497439633e-01, 4.117456069730e-04, 1.6487e+00, 1.7338e-02, - 2DIAGNOSTIC, 48, -5.812092484118e-01, 4.033210889847e-04, 1.6623e+00, 1.3545e-02, - 2DIAGNOSTIC, 49, -5.815211148704e-01, 3.709128420011e-04, 1.6772e+00, 1.4943e-02, - 2DIAGNOSTIC, 50, -5.817177102080e-01, 3.135518517722e-04, 1.6932e+00, 1.6024e-02, - 2DIAGNOSTIC, 51, -5.821765084109e-01, 2.426552792022e-04, 1.7073e+00, 1.4010e-02, - 2DIAGNOSTIC, 52, -5.825897604643e-01, 1.911696555766e-04, 1.7213e+00, 1.4061e-02, - 2DIAGNOSTIC, 53, -5.833467685622e-01, 1.450893052707e-04, 1.7356e+00, 1.4251e-02, - 2DIAGNOSTIC, 54, -5.839280745687e-01, 1.021711445133e-04, 1.7530e+00, 1.7458e-02, - 2DIAGNOSTIC, 55, -5.840144520964e-01, 7.775435194093e-05, 1.7662e+00, 1.3145e-02, - 2DIAGNOSTIC, 56, -5.840838724369e-01, 7.705892506646e-05, 1.7811e+00, 1.4943e-02, - 2DIAGNOSTIC, 57, -5.840836498289e-01, 7.243906507303e-05, 1.7984e+00, 1.7278e-02, - 2DIAGNOSTIC, 58, -5.840867577221e-01, 6.247227593024e-05, 1.8129e+00, 1.4523e-02, - 2DIAGNOSTIC, 59, -5.840446599796e-01, 4.932054884924e-05, 1.8274e+00, 1.4512e-02, - 2DIAGNOSTIC, 60, -5.840478481125e-01, 3.375001173123e-05, 1.8402e+00, 1.2782e-02, - 2DIAGNOSTIC, 61, -5.840379212366e-01, 1.949416866551e-05, 1.8529e+00, 1.2644e-02, - 2DIAGNOSTIC, 62, -5.840464052504e-01, 7.404614983043e-06, 1.8656e+00, 1.2764e-02, - 2DIAGNOSTIC, 63, -5.840754546014e-01, 1.551049769767e-06, 1.8783e+00, 1.2684e-02, - 2DIAGNOSTIC, 64, -5.841435048770e-01, 1.144418137831e-06, 1.8911e+00, 1.2842e-02, - 2DIAGNOSTIC, 65, -5.841767325979e-01, 1.637504103633e-06, 1.9077e+00, 1.6571e-02, - 2DIAGNOSTIC, 66, -5.841920904687e-01, 2.683319134559e-06, 1.9224e+00, 1.4728e-02, - 2DIAGNOSTIC, 67, -5.841399783832e-01, 3.078760532686e-06, 1.9361e+00, 1.3633e-02, - 2DIAGNOSTIC, 68, -5.841388522415e-01, 3.249522269409e-06, 1.9485e+00, 1.2434e-02, - 2DIAGNOSTIC, 69, -5.841757017000e-01, 3.097077661711e-06, 1.9608e+00, 1.2279e-02, - 2DIAGNOSTIC, 70, -5.842515726808e-01, 3.276758216254e-06, 1.9754e+00, 1.4649e-02, - 2DIAGNOSTIC, 71, -5.842521398099e-01, 3.108189619225e-06, 1.9907e+00, 1.5252e-02, - 2DIAGNOSTIC, 72, -5.842461022605e-01, 2.730173135280e-06, 2.0038e+00, 1.3111e-02, - 2DIAGNOSTIC, 73, -5.842056144769e-01, 2.065444338006e-06, 2.0167e+00, 1.2901e-02, - 2DIAGNOSTIC, 74, -5.842579681939e-01, 2.105635066457e-06, 2.0295e+00, 1.2766e-02, - 2DIAGNOSTIC, 75, -5.843132185833e-01, 2.569654841180e-06, 2.0458e+00, 1.6326e-02, - 2DIAGNOSTIC, 76, -5.843134544843e-01, 2.924966027032e-06, 2.0663e+00, 2.0518e-02, - 2DIAGNOSTIC, 77, -5.843874534827e-01, 3.203035244216e-06, 2.0813e+00, 1.4953e-02, - 2DIAGNOSTIC, 78, -5.843900595514e-01, 3.211422162913e-06, 2.0945e+00, 1.3190e-02, - 2DIAGNOSTIC, 79, -5.843770685086e-01, 3.093083991518e-06, 2.1096e+00, 1.5111e-02, - 2DIAGNOSTIC, 80, -5.843941499844e-01, 3.322593001754e-06, 2.1225e+00, 1.2884e-02, - 2DIAGNOSTIC, 81, -5.843817559343e-01, 3.187009903396e-06, 2.1353e+00, 1.2873e-02, - 2DIAGNOSTIC, 82, -5.843870940616e-01, 2.794572786137e-06, 2.1481e+00, 1.2727e-02, - 2DIAGNOSTIC, 83, -5.843951523064e-01, 1.972834731623e-06, 2.1608e+00, 1.2729e-02, - 2DIAGNOSTIC, 84, -5.844342512885e-01, 1.580723811253e-06, 2.1733e+00, 1.2520e-02, - 2DIAGNOSTIC, 85, -5.844432526804e-01, 1.474478987238e-06, 2.1878e+00, 1.4479e-02, - 2DIAGNOSTIC, 86, -5.844403156982e-01, 1.239619383368e-06, 2.2099e+00, 2.2157e-02, - 2DIAGNOSTIC, 87, -5.844487965766e-01, 1.423157281790e-06, 2.2227e+00, 1.2769e-02, - 2DIAGNOSTIC, 88, -5.844647182666e-01, 1.610596799432e-06, 2.2374e+00, 1.4691e-02, - 2DIAGNOSTIC, 89, -5.844343314729e-01, 1.413881718560e-06, 2.2498e+00, 1.2429e-02, - 2DIAGNOSTIC, 90, -5.844507943717e-01, 1.322263024238e-06, 2.2646e+00, 1.4769e-02, - 2DIAGNOSTIC, 91, -5.844676119722e-01, 1.166133312514e-06, 2.2796e+00, 1.5042e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.897098796608e-01, 1.797693134862e+308, 2.7015e+00, 4.2183e-01, - 2DIAGNOSTIC, 2, -4.900503950083e-01, 1.797693134862e+308, 2.7849e+00, 8.3415e-02, - 2DIAGNOSTIC, 3, -4.902337887285e-01, 1.797693134862e+308, 2.8852e+00, 1.0028e-01, - 2DIAGNOSTIC, 4, -4.903190144481e-01, 1.797693134862e+308, 2.9719e+00, 8.6775e-02, - 2DIAGNOSTIC, 5, -4.903610497291e-01, 1.797693134862e+308, 3.0590e+00, 8.7031e-02, - 2DIAGNOSTIC, 6, -4.905778239040e-01, 1.797693134862e+308, 3.1695e+00, 1.1054e-01, - 2DIAGNOSTIC, 7, -4.906282944660e-01, 1.797693134862e+308, 3.2567e+00, 8.7153e-02, - 2DIAGNOSTIC, 8, -4.907152758023e-01, 1.797693134862e+308, 3.3563e+00, 9.9591e-02, - 2DIAGNOSTIC, 9, -4.908643252286e-01, 1.797693134862e+308, 3.4532e+00, 9.6992e-02, - 2DIAGNOSTIC, 10, -4.909551216553e-01, 1.465808725989e-04, 3.6160e+00, 1.6275e-01, - 2DIAGNOSTIC, 11, -4.909679117467e-01, 1.137368886399e-04, 3.6987e+00, 8.2651e-02, - 2DIAGNOSTIC, 12, -4.910556309592e-01, 9.699374079622e-05, 3.7809e+00, 8.2203e-02, - 2DIAGNOSTIC, 13, -4.911092127958e-01, 8.480487900558e-05, 3.8744e+00, 9.3511e-02, - 2DIAGNOSTIC, 14, -4.911202836234e-01, 7.081335836852e-05, 3.9736e+00, 9.9191e-02, - 2DIAGNOSTIC, 15, -4.911309750791e-01, 5.429186216223e-05, 4.0685e+00, 9.4909e-02, - 2DIAGNOSTIC, 16, -4.911229721030e-01, 4.267828854576e-05, 4.1776e+00, 1.0916e-01, - 2DIAGNOSTIC, 17, -4.911201892667e-01, 3.029736886748e-05, 4.2765e+00, 9.8867e-02, - 2DIAGNOSTIC, 18, -4.911140378102e-01, 1.913661059135e-05, 4.3756e+00, 9.9083e-02, - 2DIAGNOSTIC, 19, -4.911246237565e-01, 1.236417841963e-05, 4.4620e+00, 8.6394e-02, - 2DIAGNOSTIC, 20, -4.911327836233e-01, 8.169126251727e-06, 4.5762e+00, 1.1427e-01, - 2DIAGNOSTIC, 21, -4.911302818341e-01, 3.995514390558e-06, 4.6723e+00, 9.6071e-02, - 2DIAGNOSTIC, 22, -4.911258426789e-01, 2.141415434698e-06, 4.7733e+00, 1.0098e-01, - 2DIAGNOSTIC, 23, -4.911245649823e-01, 1.700111874420e-06, 4.8551e+00, 8.1826e-02, - 2DIAGNOSTIC, 24, -4.911343041177e-01, 1.751325679804e-06, 4.9531e+00, 9.7958e-02, - 2DIAGNOSTIC, 25, -4.911346535478e-01, 2.004082199761e-06, 5.0410e+00, 8.7949e-02, - 2DIAGNOSTIC, 26, -4.911369506444e-01, 2.048093937050e-06, 5.1391e+00, 9.8070e-02, - 2DIAGNOSTIC, 27, -4.911394748082e-01, 2.019057801686e-06, 5.2408e+00, 1.0173e-01, - 2DIAGNOSTIC, 28, -4.911401292666e-01, 1.793316955274e-06, 5.3260e+00, 8.5223e-02, - 2DIAGNOSTIC, 29, -4.911379351002e-01, 1.679732608707e-06, 5.4240e+00, 9.7999e-02, - 2DIAGNOSTIC, 30, -4.911385681078e-01, 1.689480345068e-06, 5.5066e+00, 8.2528e-02, - 2DIAGNOSTIC, 31, -4.911393395423e-01, 1.610276953959e-06, 5.6029e+00, 9.6312e-02, - 2DIAGNOSTIC, 32, -4.911385154471e-01, 1.386509748680e-06, 5.7016e+00, 9.8685e-02, - 2DIAGNOSTIC, 33, -4.911388668174e-01, 1.119252817428e-06, 5.7987e+00, 9.7180e-02, - 2DIAGNOSTIC, 34, -4.911434868765e-01, 1.098940865540e-06, 6.1221e+00, 3.2340e-01, - 2DIAGNOSTIC, 35, -4.911434868595e-01, 1.067252210413e-06, 6.4398e+00, 3.1762e-01, - 2DIAGNOSTIC, 36, -4.911434868595e-01, 1.058415774871e-06, 6.5793e+00, 1.3956e-01, - 2DIAGNOSTIC, 37, -4.911434868595e-01, 1.073733755578e-06, 6.6921e+00, 1.1275e-01, - 2DIAGNOSTIC, 38, -4.911434868595e-01, 1.078825930496e-06, 6.7923e+00, 1.0021e-01, - 2DIAGNOSTIC, 39, -4.911434868595e-01, 1.026575230791e-06, 6.8924e+00, 1.0014e-01, - Elapsed time (stage 0): 7.0586e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.136195933724e-01, 1.797693134862e+308, 2.0433e-01, 2.0433e-01, - 2DIAGNOSTIC, 2, -8.166580467350e-01, 1.797693134862e+308, 2.0567e-01, 1.3340e-03, - 2DIAGNOSTIC, 3, -8.211231555633e-01, 1.797693134862e+308, 2.0699e-01, 1.3230e-03, - 2DIAGNOSTIC, 4, -8.282847577231e-01, 1.797693134862e+308, 2.0831e-01, 1.3251e-03, - 2DIAGNOSTIC, 5, -8.384527723430e-01, 1.797693134862e+308, 2.0961e-01, 1.2929e-03, - 2DIAGNOSTIC, 6, -8.484044708713e-01, 1.797693134862e+308, 2.1089e-01, 1.2820e-03, - 2DIAGNOSTIC, 7, -8.671329482574e-01, 1.797693134862e+308, 2.1220e-01, 1.3092e-03, - 2DIAGNOSTIC, 8, -8.873253413473e-01, 1.797693134862e+308, 2.1370e-01, 1.5030e-03, - 2DIAGNOSTIC, 9, -8.953312961181e-01, 1.797693134862e+308, 2.1639e-01, 2.6908e-03, - 2DIAGNOSTIC, 10, -8.949252546112e-01, 7.225855247705e-03, 2.1811e-01, 1.7209e-03, - 2DIAGNOSTIC, 11, -8.951122471251e-01, 6.526666866943e-03, 2.1960e-01, 1.4830e-03, - 2DIAGNOSTIC, 12, -8.953128838736e-01, 5.450475275218e-03, 2.2108e-01, 1.4858e-03, - 2DIAGNOSTIC, 13, -8.965012995304e-01, 4.189748925905e-03, 2.2280e-01, 1.7149e-03, - 2DIAGNOSTIC, 14, -8.976940995979e-01, 2.930290580821e-03, 2.2424e-01, 1.4420e-03, - 2DIAGNOSTIC, 15, -8.975649959970e-01, 1.802863815267e-03, 2.2596e-01, 1.7262e-03, - 2DIAGNOSTIC, 16, -8.976945643116e-01, 8.600175386911e-04, 2.2749e-01, 1.5299e-03, - 2DIAGNOSTIC, 17, -8.977300085990e-01, 3.041156650323e-04, 2.2921e-01, 1.7190e-03, - 2DIAGNOSTIC, 18, -8.988171190149e-01, 1.648253687267e-04, 2.3086e-01, 1.6441e-03, - 2DIAGNOSTIC, 19, -8.993836120548e-01, 1.718261750355e-04, 2.3234e-01, 1.4830e-03, - 2DIAGNOSTIC, 20, -9.007564793420e-01, 1.782036608497e-04, 2.3379e-01, 1.4520e-03, - 2DIAGNOSTIC, 21, -9.031446305834e-01, 2.074812426176e-04, 2.3526e-01, 1.4670e-03, - 2DIAGNOSTIC, 22, -9.058262093133e-01, 2.562133674753e-04, 2.3677e-01, 1.5059e-03, - 2DIAGNOSTIC, 23, -9.172020831728e-01, 4.521470357666e-04, 2.3874e-01, 1.9732e-03, - 2DIAGNOSTIC, 24, -9.303162076186e-01, 7.772418213223e-04, 2.4072e-01, 1.9789e-03, - 2DIAGNOSTIC, 25, -9.318858092914e-01, 1.017958414941e-03, 2.4269e-01, 1.9689e-03, - 2DIAGNOSTIC, 26, -9.316191328517e-01, 1.145345968654e-03, 2.4441e-01, 1.7240e-03, - 2DIAGNOSTIC, 27, -9.299469363259e-01, 1.137592634443e-03, 2.4591e-01, 1.5011e-03, - 2DIAGNOSTIC, 28, -9.307597399745e-01, 1.043480598745e-03, 2.4787e-01, 1.9631e-03, - 2DIAGNOSTIC, 29, -9.302309602236e-01, 8.551854300106e-04, 2.4941e-01, 1.5380e-03, - 2DIAGNOSTIC, 30, -9.297718634414e-01, 6.098611043729e-04, 2.5119e-01, 1.7819e-03, - 2DIAGNOSTIC, 31, -9.286855976669e-01, 3.399517945948e-04, 2.5267e-01, 1.4801e-03, - 2DIAGNOSTIC, 32, -9.293037275560e-01, 8.732448754875e-05, 2.5423e-01, 1.5550e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.784279316104e-01, 1.797693134862e+308, 4.6182e-01, 2.0759e-01, - 2DIAGNOSTIC, 2, -7.776509649000e-01, 1.797693134862e+308, 4.6408e-01, 2.2621e-03, - 2DIAGNOSTIC, 3, -7.781967259678e-01, 1.797693134862e+308, 4.6667e-01, 2.5880e-03, - 2DIAGNOSTIC, 4, -7.787602246385e-01, 1.797693134862e+308, 4.6889e-01, 2.2168e-03, - 2DIAGNOSTIC, 5, -7.791770283809e-01, 1.797693134862e+308, 4.7121e-01, 2.3179e-03, - 2DIAGNOSTIC, 6, -7.800439713418e-01, 1.797693134862e+308, 4.7338e-01, 2.1708e-03, - 2DIAGNOSTIC, 7, -7.817293007976e-01, 1.797693134862e+308, 4.7555e-01, 2.1770e-03, - 2DIAGNOSTIC, 8, -7.861304433021e-01, 1.797693134862e+308, 4.7773e-01, 2.1770e-03, - 2DIAGNOSTIC, 9, -7.930704315912e-01, 1.797693134862e+308, 4.8026e-01, 2.5270e-03, - 2DIAGNOSTIC, 10, -7.949465387987e-01, 1.349721232712e-03, 4.8330e-01, 3.0398e-03, - 2DIAGNOSTIC, 11, -7.971205602667e-01, 1.573816382111e-03, 4.8621e-01, 2.9171e-03, - 2DIAGNOSTIC, 12, -7.970111729895e-01, 1.593321031868e-03, 4.8910e-01, 2.8820e-03, - 2DIAGNOSTIC, 13, -7.961021465080e-01, 1.455138631979e-03, 4.9179e-01, 2.6920e-03, - 2DIAGNOSTIC, 14, -7.963880032210e-01, 1.225585559399e-03, 4.9443e-01, 2.6371e-03, - 2DIAGNOSTIC, 15, -7.966614217293e-01, 9.315161248551e-04, 4.9706e-01, 2.6300e-03, - 2DIAGNOSTIC, 16, -7.968063967647e-01, 6.134996188165e-04, 4.9968e-01, 2.6281e-03, - 2DIAGNOSTIC, 17, -7.966657398484e-01, 3.095508693590e-04, 5.0236e-01, 2.6741e-03, - 2DIAGNOSTIC, 18, -7.968690716224e-01, 1.011208393751e-04, 5.0504e-01, 2.6858e-03, - 2DIAGNOSTIC, 19, -7.969596592718e-01, 3.816054500868e-05, 5.0782e-01, 2.7730e-03, - 2DIAGNOSTIC, 20, -7.970400238283e-01, 1.180028984308e-05, 5.1054e-01, 2.7201e-03, - 2DIAGNOSTIC, 21, -7.965838107029e-01, 1.637899808400e-05, 5.1487e-01, 4.3380e-03, - 2DIAGNOSTIC, 22, -7.965743900226e-01, 1.803610143958e-05, 5.1750e-01, 2.6300e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.632590607951e-01, 1.797693134862e+308, 7.5475e-01, 2.3725e-01, - 2DIAGNOSTIC, 2, -6.648100570074e-01, 1.797693134862e+308, 7.6859e-01, 1.3833e-02, - 2DIAGNOSTIC, 3, -6.666658822790e-01, 1.797693134862e+308, 7.8284e-01, 1.4248e-02, - 2DIAGNOSTIC, 4, -6.686626652105e-01, 1.797693134862e+308, 7.9661e-01, 1.3776e-02, - 2DIAGNOSTIC, 5, -6.698746339363e-01, 1.797693134862e+308, 8.1051e-01, 1.3897e-02, - 2DIAGNOSTIC, 6, -6.712405697758e-01, 1.797693134862e+308, 8.2355e-01, 1.3037e-02, - 2DIAGNOSTIC, 7, -6.732629832588e-01, 1.797693134862e+308, 8.3872e-01, 1.5175e-02, - 2DIAGNOSTIC, 8, -6.747922778141e-01, 1.797693134862e+308, 8.5993e-01, 2.1210e-02, - 2DIAGNOSTIC, 9, -6.747104286111e-01, 1.797693134862e+308, 8.7335e-01, 1.3420e-02, - 2DIAGNOSTIC, 10, -6.751444536896e-01, 1.216513830139e-03, 8.8671e-01, 1.3364e-02, - 2DIAGNOSTIC, 11, -6.756331975235e-01, 9.700077181444e-04, 9.0276e-01, 1.6044e-02, - 2DIAGNOSTIC, 12, -6.760594095912e-01, 7.456594865539e-04, 9.1695e-01, 1.4189e-02, - 2DIAGNOSTIC, 13, -6.763957904649e-01, 5.586400313536e-04, 9.3285e-01, 1.5900e-02, - 2DIAGNOSTIC, 14, -6.766783819039e-01, 4.172461965972e-04, 9.5286e-01, 2.0009e-02, - 2DIAGNOSTIC, 15, -6.766061705166e-01, 2.892080086138e-04, 9.7697e-01, 2.4112e-02, - 2DIAGNOSTIC, 16, -6.766165199572e-01, 1.862140762051e-04, 9.9297e-01, 1.6001e-02, - 2DIAGNOSTIC, 17, -6.766049357341e-01, 1.273139550907e-04, 1.0109e+00, 1.7973e-02, - 2DIAGNOSTIC, 18, -6.766272497513e-01, 9.996570582107e-05, 1.0271e+00, 1.6160e-02, - 2DIAGNOSTIC, 19, -6.765949929163e-01, 6.374670753510e-05, 1.0410e+00, 1.3851e-02, - 2DIAGNOSTIC, 20, -6.765999154636e-01, 3.461708749681e-05, 1.0568e+00, 1.5852e-02, - 2DIAGNOSTIC, 21, -6.766042195360e-01, 1.503497052163e-05, 1.0715e+00, 1.4700e-02, - 2DIAGNOSTIC, 22, -6.765761632152e-01, 3.462892340871e-06, 1.0858e+00, 1.4248e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.687104184388e-01, 1.797693134862e+308, 1.5196e+00, 4.3383e-01, - 2DIAGNOSTIC, 2, -5.694908356985e-01, 1.797693134862e+308, 1.6170e+00, 9.7430e-02, - 2DIAGNOSTIC, 3, -5.701491443569e-01, 1.797693134862e+308, 1.7158e+00, 9.8828e-02, - 2DIAGNOSTIC, 4, -5.705795811422e-01, 1.797693134862e+308, 1.8171e+00, 1.0127e-01, - 2DIAGNOSTIC, 5, -5.709798737965e-01, 1.797693134862e+308, 1.9181e+00, 1.0097e-01, - 2DIAGNOSTIC, 6, -5.718334019469e-01, 1.797693134862e+308, 2.0320e+00, 1.1390e-01, - 2DIAGNOSTIC, 7, -5.730930616332e-01, 1.797693134862e+308, 2.1302e+00, 9.8225e-02, - 2DIAGNOSTIC, 8, -5.735676190104e-01, 1.797693134862e+308, 2.2582e+00, 1.2797e-01, - 2DIAGNOSTIC, 9, -5.736940344870e-01, 1.797693134862e+308, 2.3955e+00, 1.3737e-01, - 2DIAGNOSTIC, 10, -5.737756568503e-01, 6.223197993100e-04, 2.4887e+00, 9.3170e-02, - 2DIAGNOSTIC, 11, -5.740363195598e-01, 5.142323420490e-04, 2.5955e+00, 1.0675e-01, - 2DIAGNOSTIC, 12, -5.742127622198e-01, 4.164340202048e-04, 2.6890e+00, 9.3489e-02, - 2DIAGNOSTIC, 13, -5.743202307268e-01, 3.253583570007e-04, 2.7947e+00, 1.0578e-01, - 2DIAGNOSTIC, 14, -5.750413001888e-01, 2.594905461036e-04, 2.8892e+00, 9.4488e-02, - 2DIAGNOSTIC, 15, -5.757913219577e-01, 2.163251959521e-04, 3.0153e+00, 1.2606e-01, - 2DIAGNOSTIC, 16, -5.763167211159e-01, 2.003099872029e-04, 3.1220e+00, 1.0672e-01, - 2DIAGNOSTIC, 17, -5.767210097438e-01, 2.162009034272e-04, 3.2293e+00, 1.0730e-01, - 2DIAGNOSTIC, 18, -5.768710704537e-01, 2.278173110955e-04, 3.3900e+00, 1.6071e-01, - 2DIAGNOSTIC, 19, -5.768762833488e-01, 2.206303679306e-04, 3.4877e+00, 9.7640e-02, - 2DIAGNOSTIC, 20, -5.770060024186e-01, 1.987454110554e-04, 3.6011e+00, 1.1347e-01, - 2DIAGNOSTIC, 21, -5.770114155229e-01, 1.667202270504e-04, 3.7147e+00, 1.1361e-01, - 2DIAGNOSTIC, 22, -5.770170408861e-01, 1.265240490635e-04, 3.8579e+00, 1.4317e-01, - 2DIAGNOSTIC, 23, -5.770155176276e-01, 8.031204927288e-05, 3.9701e+00, 1.1222e-01, - 2DIAGNOSTIC, 24, -5.770120898172e-01, 4.517696503735e-05, 4.1458e+00, 1.7568e-01, - 2DIAGNOSTIC, 25, -5.770106226356e-01, 2.337262573697e-05, 4.2611e+00, 1.1526e-01, - 2DIAGNOSTIC, 26, -5.770091582992e-01, 1.094923307562e-05, 4.3739e+00, 1.1289e-01, - 2DIAGNOSTIC, 27, -5.770058611261e-01, 5.840014689708e-06, 4.4719e+00, 9.7923e-02, - 2DIAGNOSTIC, 28, -5.770046457452e-01, 3.315195543363e-06, 4.5702e+00, 9.8338e-02, - Elapsed time (stage 1): 4.6996e+00 - - -Total elapsed time: 1.1761e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:47:47 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 13:47:48 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x559e2276b4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.803, 68.5715, -107.025] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559e22770fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe377495010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x559e2276c850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.803, 68.5715, -107.025] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559e22769f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe373dd6010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x559e22783b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.803, 68.5715, -107.025] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559e22770550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe370717010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x559e22788d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.803, 68.5715, -107.025] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559e22786c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe36d058010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x559e2278af70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.803, 68.5715, -107.025] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559e227893a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe369999010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x559e2278b540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [104.803, 68.5715, -107.025] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559e2278b4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe3662da010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.259823096658e-01, 1.797693134862e+308, 2.1845e-01, 2.1845e-01, - 2DIAGNOSTIC, 2, -6.284201439546e-01, 1.797693134862e+308, 2.2055e-01, 2.0969e-03, - 2DIAGNOSTIC, 3, -6.323139047913e-01, 1.797693134862e+308, 2.2259e-01, 2.0440e-03, - 2DIAGNOSTIC, 4, -6.381190409613e-01, 1.797693134862e+308, 2.2459e-01, 1.9951e-03, - 2DIAGNOSTIC, 5, -6.431418430072e-01, 1.797693134862e+308, 2.2659e-01, 2.0010e-03, - 2DIAGNOSTIC, 6, -6.474059913140e-01, 1.797693134862e+308, 2.2864e-01, 2.0471e-03, - 2DIAGNOSTIC, 7, -6.508429123095e-01, 1.797693134862e+308, 2.3093e-01, 2.2919e-03, - 2DIAGNOSTIC, 8, -6.524794283635e-01, 1.797693134862e+308, 2.3375e-01, 2.8219e-03, - 2DIAGNOSTIC, 9, -6.526801588288e-01, 1.797693134862e+308, 2.3573e-01, 1.9782e-03, - 2DIAGNOSTIC, 10, -6.530993407218e-01, 3.060697015962e-03, 2.3855e-01, 2.8179e-03, - 2DIAGNOSTIC, 11, -6.534411617893e-01, 2.345108376203e-03, 2.4103e-01, 2.4860e-03, - 2DIAGNOSTIC, 12, -6.534723026177e-01, 1.629977138830e-03, 2.4351e-01, 2.4738e-03, - 2DIAGNOSTIC, 13, -6.533538427643e-01, 1.005233780666e-03, 2.4570e-01, 2.1989e-03, - 2DIAGNOSTIC, 14, -6.532447141946e-01, 5.577360416275e-04, 2.4790e-01, 2.1949e-03, - 2DIAGNOSTIC, 15, -6.534206076836e-01, 2.705616313642e-04, 2.5012e-01, 2.2190e-03, - 2DIAGNOSTIC, 16, -6.536188300084e-01, 1.151553498576e-04, 2.5263e-01, 2.5070e-03, - 2DIAGNOSTIC, 17, -6.536526475192e-01, 5.634883337810e-05, 2.5487e-01, 2.2480e-03, - 2DIAGNOSTIC, 18, -6.536873665218e-01, 4.015390637293e-05, 2.5792e-01, 3.0432e-03, - 2DIAGNOSTIC, 19, -6.538341190764e-01, 3.007824487104e-05, 2.6016e-01, 2.2390e-03, - 2DIAGNOSTIC, 20, -6.538407884546e-01, 2.732894512104e-05, 2.6234e-01, 2.1811e-03, - 2DIAGNOSTIC, 21, -6.539848906736e-01, 3.246510856898e-05, 2.6540e-01, 3.0591e-03, - 2DIAGNOSTIC, 22, -6.538598758053e-01, 3.241043419227e-05, 2.6758e-01, 2.1842e-03, - 2DIAGNOSTIC, 23, -6.538647449665e-01, 2.754274184302e-05, 2.6977e-01, 2.1870e-03, - 2DIAGNOSTIC, 24, -6.540051503979e-01, 2.113024723695e-05, 2.7198e-01, 2.2168e-03, - 2DIAGNOSTIC, 25, -6.541634128448e-01, 1.901907172255e-05, 2.7505e-01, 3.0630e-03, - 2DIAGNOSTIC, 26, -6.540432887916e-01, 1.666981079938e-05, 2.7736e-01, 2.3141e-03, - 2DIAGNOSTIC, 27, -6.540461815916e-01, 1.379998357703e-05, 2.7960e-01, 2.2399e-03, - 2DIAGNOSTIC, 28, -6.540522607281e-01, 1.057085319792e-05, 2.8179e-01, 2.1880e-03, - 2DIAGNOSTIC, 29, -6.540639855812e-01, 8.981623101145e-06, 2.8431e-01, 2.5201e-03, - 2DIAGNOSTIC, 30, -6.540831113150e-01, 7.006053362180e-06, 2.8663e-01, 2.3239e-03, - 2DIAGNOSTIC, 31, -6.539974346674e-01, 5.519989448026e-06, 2.9065e-01, 4.0209e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.418089648992e-01, 1.797693134862e+308, 5.1647e-01, 2.2581e-01, - 2DIAGNOSTIC, 2, -5.430009898140e-01, 1.797693134862e+308, 5.3234e-01, 1.5876e-02, - 2DIAGNOSTIC, 3, -5.443952355347e-01, 1.797693134862e+308, 5.5032e-01, 1.7975e-02, - 2DIAGNOSTIC, 4, -5.449210700674e-01, 1.797693134862e+308, 5.6749e-01, 1.7176e-02, - 2DIAGNOSTIC, 5, -5.450689600892e-01, 1.797693134862e+308, 5.8316e-01, 1.5671e-02, - 2DIAGNOSTIC, 6, -5.451119051254e-01, 1.797693134862e+308, 5.9966e-01, 1.6492e-02, - 2DIAGNOSTIC, 7, -5.451322846695e-01, 1.797693134862e+308, 6.1603e-01, 1.6375e-02, - 2DIAGNOSTIC, 8, -5.451501766538e-01, 1.797693134862e+308, 6.3150e-01, 1.5466e-02, - 2DIAGNOSTIC, 9, -5.451315160860e-01, 1.797693134862e+308, 6.4700e-01, 1.5502e-02, - 2DIAGNOSTIC, 10, -5.451414141358e-01, 3.074640449758e-04, 6.6306e-01, 1.6062e-02, - 2DIAGNOSTIC, 11, -5.451224043935e-01, 1.434477416968e-04, 6.7989e-01, 1.6828e-02, - 2DIAGNOSTIC, 12, -5.451273480745e-01, 4.488087453236e-05, 6.9597e-01, 1.6086e-02, - 2DIAGNOSTIC, 13, -5.451488604300e-01, 1.398337105254e-05, 7.1395e-01, 1.7973e-02, - 2DIAGNOSTIC, 14, -5.451486273946e-01, 5.895231950589e-06, 7.2974e-01, 1.5790e-02, - 2DIAGNOSTIC, 15, -5.451479363417e-01, 3.663126844689e-06, 7.4537e-01, 1.5634e-02, - 2DIAGNOSTIC, 16, -5.451469839108e-01, 2.936973828055e-06, 7.5943e-01, 1.4055e-02, - 2DIAGNOSTIC, 17, -5.451534166300e-01, 3.011858116450e-06, 7.7874e-01, 1.9312e-02, - 2DIAGNOSTIC, 18, -5.451466338589e-01, 3.288125873031e-06, 7.9271e-01, 1.3969e-02, - 2DIAGNOSTIC, 19, -5.451308869481e-01, 2.442882491051e-06, 8.0907e-01, 1.6365e-02, - 2DIAGNOSTIC, 20, -5.451113094752e-01, 1.396135772484e-06, 8.2272e-01, 1.3652e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.599603855344e-01, 1.797693134862e+308, 1.2014e+00, 3.7865e-01, - 2DIAGNOSTIC, 2, -4.602450604975e-01, 1.797693134862e+308, 1.2947e+00, 9.3283e-02, - 2DIAGNOSTIC, 3, -4.603833502008e-01, 1.797693134862e+308, 1.4386e+00, 1.4395e-01, - 2DIAGNOSTIC, 4, -4.603803555322e-01, 1.797693134862e+308, 1.5705e+00, 1.3193e-01, - 2DIAGNOSTIC, 5, -4.603789747226e-01, 1.797693134862e+308, 1.6775e+00, 1.0695e-01, - 2DIAGNOSTIC, 6, -4.603788563941e-01, 1.797693134862e+308, 1.7999e+00, 1.2242e-01, - 2DIAGNOSTIC, 7, -4.603784157962e-01, 1.797693134862e+308, 1.8956e+00, 9.5680e-02, - 2DIAGNOSTIC, 8, -4.603764767782e-01, 1.797693134862e+308, 2.0161e+00, 1.2051e-01, - 2DIAGNOSTIC, 9, -4.603791983382e-01, 1.797693134862e+308, 2.1244e+00, 1.0826e-01, - 2DIAGNOSTIC, 10, -4.603782862832e-01, 3.586225584695e-05, 2.2191e+00, 9.4789e-02, - 2DIAGNOSTIC, 11, -4.603785700846e-01, 1.002233474519e-05, 2.3257e+00, 1.0656e-01, - 2DIAGNOSTIC, 12, -4.603820549600e-01, 2.471038513252e-06, 2.4326e+00, 1.0693e-01, - 2DIAGNOSTIC, 13, -4.603819626240e-01, 2.660191375931e-06, 2.5839e+00, 1.5122e-01, - 2DIAGNOSTIC, 14, -4.603810256200e-01, 2.631574521669e-06, 2.6939e+00, 1.1004e-01, - 2DIAGNOSTIC, 15, -4.603801628609e-01, 2.483817802712e-06, 2.7959e+00, 1.0196e-01, - 2DIAGNOSTIC, 16, -4.603793006241e-01, 2.284608975264e-06, 2.8834e+00, 8.7497e-02, - 2DIAGNOSTIC, 17, -4.603787597316e-01, 2.046387848599e-06, 2.9778e+00, 9.4420e-02, - 2DIAGNOSTIC, 18, -4.603761088561e-01, 1.657560431093e-06, 3.0742e+00, 9.6383e-02, - 2DIAGNOSTIC, 19, -4.603783574133e-01, 1.486563559173e-06, 3.1837e+00, 1.0955e-01, - 2DIAGNOSTIC, 20, -4.603775680515e-01, 1.296008755008e-06, 3.2936e+00, 1.0989e-01, - 2DIAGNOSTIC, 21, -4.603754293952e-01, 1.093869300126e-06, 3.3897e+00, 9.6150e-02, - 2DIAGNOSTIC, 22, -4.603778465872e-01, 1.117503175427e-06, 3.4992e+00, 1.0946e-01, - 2DIAGNOSTIC, 23, -4.603775724090e-01, 1.158176535780e-06, 3.5998e+00, 1.0058e-01, - 2DIAGNOSTIC, 24, -4.603746461833e-01, 1.116725281948e-06, 3.7165e+00, 1.1668e-01, - 2DIAGNOSTIC, 25, -4.603732828895e-01, 1.045880305528e-06, 3.8398e+00, 1.2329e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.976884577625e-01, 1.797693134862e+308, 5.1783e+00, 1.3386e+00, - 2DIAGNOSTIC, 2, -3.977322869683e-01, 1.797693134862e+308, 5.8082e+00, 6.2985e-01, - 2DIAGNOSTIC, 3, -3.977351040602e-01, 1.797693134862e+308, 6.4659e+00, 6.5770e-01, - 2DIAGNOSTIC, 4, -3.977345025455e-01, 1.797693134862e+308, 7.2391e+00, 7.7316e-01, - 2DIAGNOSTIC, 5, -3.977342919543e-01, 1.797693134862e+308, 8.1356e+00, 8.9659e-01, - 2DIAGNOSTIC, 6, -3.977344498949e-01, 1.797693134862e+308, 8.8258e+00, 6.9020e-01, - 2DIAGNOSTIC, 7, -3.977341990378e-01, 1.797693134862e+308, 9.4458e+00, 6.1999e-01, - 2DIAGNOSTIC, 8, -3.977338068385e-01, 1.797693134862e+308, 1.0186e+01, 7.4040e-01, - 2DIAGNOSTIC, 9, -3.977337061343e-01, 1.797693134862e+308, 1.0920e+01, 7.3336e-01, - 2DIAGNOSTIC, 10, -3.977335230665e-01, 6.416544195198e-06, 1.1505e+01, 5.8578e-01, - 2DIAGNOSTIC, 11, -3.977334084766e-01, 2.821248588566e-06, 1.2162e+01, 6.5645e-01, - 2DIAGNOSTIC, 12, -3.977332937759e-01, 2.429457612557e-06, 1.2841e+01, 6.7901e-01, - 2DIAGNOSTIC, 13, -3.977329785071e-01, 2.256779796372e-06, 1.3415e+01, 5.7406e-01, - 2DIAGNOSTIC, 14, -3.977327378050e-01, 2.083742669037e-06, 1.3968e+01, 5.5347e-01, - 2DIAGNOSTIC, 15, -3.977330462990e-01, 1.955220162969e-06, 1.4625e+01, 6.5633e-01, - 2DIAGNOSTIC, 16, -3.977331775117e-01, 1.870269284415e-06, 1.5278e+01, 6.5375e-01, - 2DIAGNOSTIC, 17, -3.977332127374e-01, 1.797378442886e-06, 1.5931e+01, 6.5220e-01, - 2DIAGNOSTIC, 18, -3.977329034141e-01, 1.711995013497e-06, 1.6571e+01, 6.4085e-01, - 2DIAGNOSTIC, 19, -3.977329251695e-01, 1.638405985022e-06, 1.7153e+01, 5.8144e-01, - 2DIAGNOSTIC, 20, -3.977330601588e-01, 1.573363583030e-06, 1.7915e+01, 7.6177e-01, - 2DIAGNOSTIC, 21, -3.977327050114e-01, 1.499564672242e-06, 1.8567e+01, 6.5193e-01, - 2DIAGNOSTIC, 22, -3.977327732017e-01, 1.433142724667e-06, 1.9182e+01, 6.1581e-01, - 2DIAGNOSTIC, 23, -3.977327475408e-01, 1.363525880267e-06, 1.9833e+01, 6.5080e-01, - 2DIAGNOSTIC, 24, -3.977326810440e-01, 1.292076966197e-06, 2.0453e+01, 6.2019e-01, - 2DIAGNOSTIC, 25, -3.977326145307e-01, 1.236199912560e-06, 2.1085e+01, 6.3195e-01, - 2DIAGNOSTIC, 26, -3.977325622791e-01, 1.190237937605e-06, 2.1750e+01, 6.6446e-01, - 2DIAGNOSTIC, 27, -3.977324785588e-01, 1.149823791541e-06, 2.2375e+01, 6.2474e-01, - 2DIAGNOSTIC, 28, -3.977323796867e-01, 1.104456722224e-06, 2.2922e+01, 5.4703e-01, - 2DIAGNOSTIC, 29, -3.977323100373e-01, 1.063910605024e-06, 2.3473e+01, 5.5109e-01, - 2DIAGNOSTIC, 30, -3.977324309277e-01, 1.035557392344e-06, 2.4030e+01, 5.5722e-01, - 2DIAGNOSTIC, 31, -3.977326351741e-01, 1.007719986318e-06, 2.4658e+01, 6.2828e-01, - Elapsed time (stage 0): 2.5023e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.315900197270e-01, 1.797693134862e+308, 1.9616e-01, 1.9616e-01, - 2DIAGNOSTIC, 2, -6.334334882052e-01, 1.797693134862e+308, 1.9832e-01, 2.1589e-03, - 2DIAGNOSTIC, 3, -6.356150263944e-01, 1.797693134862e+308, 2.0045e-01, 2.1341e-03, - 2DIAGNOSTIC, 4, -6.372704106426e-01, 1.797693134862e+308, 2.0257e-01, 2.1179e-03, - 2DIAGNOSTIC, 5, -6.376138531043e-01, 1.797693134862e+308, 2.0508e-01, 2.5091e-03, - 2DIAGNOSTIC, 6, -6.382930096588e-01, 1.797693134862e+308, 2.0720e-01, 2.1138e-03, - 2DIAGNOSTIC, 7, -6.386637922759e-01, 1.797693134862e+308, 2.1073e-01, 3.5300e-03, - 2DIAGNOSTIC, 8, -6.387982245426e-01, 1.797693134862e+308, 2.1282e-01, 2.0971e-03, - 2DIAGNOSTIC, 9, -6.388394955241e-01, 1.797693134862e+308, 2.1494e-01, 2.1210e-03, - 2DIAGNOSTIC, 10, -6.389160195825e-01, 6.746105306903e-04, 2.1740e-01, 2.4538e-03, - 2DIAGNOSTIC, 11, -6.389842177566e-01, 4.145384700117e-04, 2.1982e-01, 2.4271e-03, - 2DIAGNOSTIC, 12, -6.390673571761e-01, 2.308971782255e-04, 2.2226e-01, 2.4312e-03, - 2DIAGNOSTIC, 13, -6.391603032238e-01, 1.317430255607e-04, 2.2468e-01, 2.4250e-03, - 2DIAGNOSTIC, 14, -6.392866583382e-01, 9.185824673792e-05, 2.2748e-01, 2.7990e-03, - 2DIAGNOSTIC, 15, -6.400073441002e-01, 8.027586636539e-05, 2.3109e-01, 3.6111e-03, - 2DIAGNOSTIC, 16, -6.400548092008e-01, 8.244598004342e-05, 2.3400e-01, 2.9070e-03, - 2DIAGNOSTIC, 17, -6.400601535110e-01, 8.694923927590e-05, 2.3663e-01, 2.6309e-03, - 2DIAGNOSTIC, 18, -6.400663177940e-01, 8.683569934520e-05, 2.3896e-01, 2.3310e-03, - 2DIAGNOSTIC, 19, -6.400690251217e-01, 7.977697895482e-05, 2.4128e-01, 2.3170e-03, - 2DIAGNOSTIC, 20, -6.400711293132e-01, 6.764972311851e-05, 2.4351e-01, 2.2321e-03, - 2DIAGNOSTIC, 21, -6.400752125770e-01, 5.200379622494e-05, 2.4577e-01, 2.2631e-03, - 2DIAGNOSTIC, 22, -6.400819970583e-01, 3.509806765586e-05, 2.5022e-01, 4.4491e-03, - 2DIAGNOSTIC, 23, -6.400822196914e-01, 1.842942202301e-05, 2.5416e-01, 3.9370e-03, - 2DIAGNOSTIC, 24, -6.400822200927e-01, 3.528918952646e-06, 2.6157e-01, 7.4151e-03, - 2DIAGNOSTIC, 25, -6.400822200927e-01, 2.424860649601e-06, 2.6415e-01, 2.5799e-03, - 2DIAGNOSTIC, 26, -6.400822200927e-01, 2.107857927806e-06, 2.6720e-01, 3.0420e-03, - 2DIAGNOSTIC, 27, -6.400822200927e-01, 1.815445715807e-06, 2.6992e-01, 2.7220e-03, - 2DIAGNOSTIC, 28, -6.400822200927e-01, 1.581796486523e-06, 2.7288e-01, 2.9590e-03, - 2DIAGNOSTIC, 29, -6.400822200927e-01, 1.365460599527e-06, 2.7536e-01, 2.4829e-03, - 2DIAGNOSTIC, 30, -6.400822200927e-01, 1.169113867473e-06, 2.7785e-01, 2.4879e-03, - 2DIAGNOSTIC, 31, -6.400822200927e-01, 1.031186153279e-06, 2.8086e-01, 3.0119e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.448206181445e-01, 1.797693134862e+308, 4.8920e-01, 2.0834e-01, - 2DIAGNOSTIC, 2, -5.452438524632e-01, 1.797693134862e+308, 5.0402e-01, 1.4827e-02, - 2DIAGNOSTIC, 3, -5.458063224365e-01, 1.797693134862e+308, 5.1849e-01, 1.4470e-02, - 2DIAGNOSTIC, 4, -5.463075797171e-01, 1.797693134862e+308, 5.3312e-01, 1.4625e-02, - 2DIAGNOSTIC, 5, -5.468585187956e-01, 1.797693134862e+308, 5.4781e-01, 1.4687e-02, - 2DIAGNOSTIC, 6, -5.476140129007e-01, 1.797693134862e+308, 5.6395e-01, 1.6144e-02, - 2DIAGNOSTIC, 7, -5.481866014372e-01, 1.797693134862e+308, 5.8407e-01, 2.0124e-02, - 2DIAGNOSTIC, 8, -5.483993750223e-01, 1.797693134862e+308, 5.9966e-01, 1.5584e-02, - 2DIAGNOSTIC, 9, -5.485210857576e-01, 1.797693134862e+308, 6.1719e-01, 1.7529e-02, - 2DIAGNOSTIC, 10, -5.486877876756e-01, 4.994869637195e-04, 6.3131e-01, 1.4124e-02, - 2DIAGNOSTIC, 11, -5.489061307933e-01, 4.064784004210e-04, 6.4535e-01, 1.4044e-02, - 2DIAGNOSTIC, 12, -5.490743218991e-01, 3.177001924518e-04, 6.6148e-01, 1.6124e-02, - 2DIAGNOSTIC, 13, -5.492788169461e-01, 2.447564119079e-04, 6.7926e-01, 1.7778e-02, - 2DIAGNOSTIC, 14, -5.494408075478e-01, 1.848028274746e-04, 6.9595e-01, 1.6696e-02, - 2DIAGNOSTIC, 15, -5.496485988362e-01, 1.419357281562e-04, 7.1115e-01, 1.5196e-02, - 2DIAGNOSTIC, 16, -5.497634863191e-01, 1.192759474331e-04, 7.3499e-01, 2.3844e-02, - 2DIAGNOSTIC, 17, -5.497752019853e-01, 1.061837379436e-04, 7.4906e-01, 1.4073e-02, - 2DIAGNOSTIC, 18, -5.498273689212e-01, 9.260044057732e-05, 7.6416e-01, 1.5093e-02, - 2DIAGNOSTIC, 19, -5.498789889961e-01, 7.667845605510e-05, 7.7936e-01, 1.5207e-02, - 2DIAGNOSTIC, 20, -5.499117281759e-01, 6.039573158827e-05, 7.9442e-01, 1.5052e-02, - 2DIAGNOSTIC, 21, -5.499200066280e-01, 4.573614681602e-05, 8.0974e-01, 1.5326e-02, - 2DIAGNOSTIC, 22, -5.499775063535e-01, 3.359255167443e-05, 8.2695e-01, 1.7203e-02, - 2DIAGNOSTIC, 23, -5.499763490245e-01, 2.402759594367e-05, 8.4671e-01, 1.9761e-02, - 2DIAGNOSTIC, 24, -5.499954603339e-01, 1.694731781415e-05, 8.9641e-01, 4.9706e-02, - 2DIAGNOSTIC, 25, -5.499954603121e-01, 1.321809885575e-05, 9.1149e-01, 1.5081e-02, - 2DIAGNOSTIC, 26, -5.499954608283e-01, 1.095942653884e-05, 9.2705e-01, 1.5557e-02, - 2DIAGNOSTIC, 27, -5.499954617010e-01, 8.156850346316e-06, 9.4232e-01, 1.5267e-02, - 2DIAGNOSTIC, 28, -5.499954631761e-01, 5.839334616640e-06, 9.5745e-01, 1.5135e-02, - 2DIAGNOSTIC, 29, -5.499954656692e-01, 4.155990462260e-06, 9.7228e-01, 1.4826e-02, - 2DIAGNOSTIC, 30, -5.499954698811e-01, 2.867567063657e-06, 9.8709e-01, 1.4808e-02, - 2DIAGNOSTIC, 31, -5.499954769918e-01, 1.607399485043e-06, 1.0021e+00, 1.5049e-02, - 2DIAGNOSTIC, 32, -5.499954889837e-01, 1.306053160594e-06, 1.0167e+00, 1.4564e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.600703166173e-01, 1.797693134862e+308, 1.4012e+00, 3.8454e-01, - 2DIAGNOSTIC, 2, -4.606450401087e-01, 1.797693134862e+308, 1.5020e+00, 1.0081e-01, - 2DIAGNOSTIC, 3, -4.611750011258e-01, 1.797693134862e+308, 1.6034e+00, 1.0131e-01, - 2DIAGNOSTIC, 4, -4.614429417930e-01, 1.797693134862e+308, 1.7047e+00, 1.0138e-01, - 2DIAGNOSTIC, 5, -4.617096419414e-01, 1.797693134862e+308, 1.8187e+00, 1.1398e-01, - 2DIAGNOSTIC, 6, -4.620574702104e-01, 1.797693134862e+308, 2.0285e+00, 2.0981e-01, - 2DIAGNOSTIC, 7, -4.620618403202e-01, 1.797693134862e+308, 2.1434e+00, 1.1484e-01, - 2DIAGNOSTIC, 8, -4.620662502281e-01, 1.797693134862e+308, 2.2471e+00, 1.0378e-01, - 2DIAGNOSTIC, 9, -4.620700292034e-01, 1.797693134862e+308, 2.3492e+00, 1.0210e-01, - 2DIAGNOSTIC, 10, -4.620841540390e-01, 2.637137445902e-04, 2.4493e+00, 1.0002e-01, - 2DIAGNOSTIC, 11, -4.620988116712e-01, 1.627286068730e-04, 2.5493e+00, 1.0001e-01, - 2DIAGNOSTIC, 12, -4.621128674681e-01, 9.399641865648e-05, 2.6488e+00, 9.9566e-02, - 2DIAGNOSTIC, 13, -4.621226232643e-01, 5.321223350238e-05, 2.7621e+00, 1.1327e-01, - 2DIAGNOSTIC, 14, -4.621283873662e-01, 2.553486602573e-05, 2.8625e+00, 1.0044e-01, - 2DIAGNOSTIC, 15, -4.621359657089e-01, 1.027325188337e-05, 2.9633e+00, 1.0073e-01, - 2DIAGNOSTIC, 16, -4.621451576455e-01, 9.894000338379e-06, 3.0655e+00, 1.0220e-01, - 2DIAGNOSTIC, 17, -4.621536100951e-01, 9.286657594580e-06, 3.1665e+00, 1.0101e-01, - 2DIAGNOSTIC, 18, -4.621635459091e-01, 8.554295901450e-06, 3.2683e+00, 1.0185e-01, - 2DIAGNOSTIC, 19, -4.621925274868e-01, 8.325058059172e-06, 3.4583e+00, 1.8997e-01, - 2DIAGNOSTIC, 20, -4.621955117491e-01, 8.001235827101e-06, 3.5774e+00, 1.1908e-01, - 2DIAGNOSTIC, 21, -4.621931281345e-01, 7.471421330792e-06, 3.6968e+00, 1.1946e-01, - 2DIAGNOSTIC, 22, -4.621932010934e-01, 6.836637666305e-06, 3.8167e+00, 1.1986e-01, - 2DIAGNOSTIC, 23, -4.621932375972e-01, 6.009059093398e-06, 3.9361e+00, 1.1936e-01, - 2DIAGNOSTIC, 24, -4.621919892189e-01, 4.918748187102e-06, 4.0409e+00, 1.0483e-01, - 2DIAGNOSTIC, 25, -4.621922392559e-01, 3.768275424754e-06, 4.1420e+00, 1.0111e-01, - 2DIAGNOSTIC, 26, -4.621929102868e-01, 2.713540063801e-06, 4.2575e+00, 1.1547e-01, - 2DIAGNOSTIC, 27, -4.621938277594e-01, 1.812129701941e-06, 4.3728e+00, 1.1531e-01, - 2DIAGNOSTIC, 28, -4.621918968240e-01, 1.072748003719e-06, 4.4878e+00, 1.1499e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.972230355121e-01, 1.797693134862e+308, 5.8157e+00, 1.3279e+00, - 2DIAGNOSTIC, 2, -3.973686520535e-01, 1.797693134862e+308, 6.5098e+00, 6.9415e-01, - 2DIAGNOSTIC, 3, -3.974256948450e-01, 1.797693134862e+308, 7.2763e+00, 7.6645e-01, - 2DIAGNOSTIC, 4, -3.974499583060e-01, 1.797693134862e+308, 7.8805e+00, 6.0421e-01, - 2DIAGNOSTIC, 5, -3.975288076204e-01, 1.797693134862e+308, 8.6121e+00, 7.3162e-01, - 2DIAGNOSTIC, 6, -3.975796268210e-01, 1.797693134862e+308, 9.2284e+00, 6.1626e-01, - 2DIAGNOSTIC, 7, -3.975863211570e-01, 1.797693134862e+308, 9.9930e+00, 7.6463e-01, - 2DIAGNOSTIC, 8, -3.975871639346e-01, 1.797693134862e+308, 1.0703e+01, 7.0984e-01, - 2DIAGNOSTIC, 9, -3.975878033120e-01, 1.797693134862e+308, 1.1380e+01, 6.7709e-01, - 2DIAGNOSTIC, 10, -3.975882896210e-01, 5.624395433927e-05, 1.1984e+01, 6.0392e-01, - 2DIAGNOSTIC, 11, -3.975884114518e-01, 3.454290475327e-05, 1.3146e+01, 1.1621e+00, - 2DIAGNOSTIC, 12, -3.975884824718e-01, 2.228091698313e-05, 1.3747e+01, 6.0132e-01, - 2DIAGNOSTIC, 13, -3.975883578372e-01, 1.332146934235e-05, 1.4352e+01, 6.0492e-01, - 2DIAGNOSTIC, 14, -3.975882399922e-01, 5.808483041284e-06, 1.4959e+01, 6.0697e-01, - 2DIAGNOSTIC, 15, -3.975882796267e-01, 2.669345025047e-06, 1.5582e+01, 6.2243e-01, - 2DIAGNOSTIC, 16, -3.975882034739e-01, 2.131727416102e-06, 1.6278e+01, 6.9595e-01, - 2DIAGNOSTIC, 17, -3.975879551113e-01, 1.914884038050e-06, 1.6906e+01, 6.2816e-01, - 2DIAGNOSTIC, 18, -3.975878623523e-01, 1.747858935475e-06, 1.8912e+01, 2.0065e+00, - 2DIAGNOSTIC, 19, -3.975878623522e-01, 1.623893091801e-06, 2.0282e+01, 1.3702e+00, - 2DIAGNOSTIC, 20, -3.975878623522e-01, 1.534054508312e-06, 2.0969e+01, 6.8636e-01, - 2DIAGNOSTIC, 21, -3.975878623522e-01, 1.462029268387e-06, 2.1649e+01, 6.8023e-01, - 2DIAGNOSTIC, 22, -3.975878623522e-01, 1.404047454037e-06, 2.2496e+01, 8.4665e-01, - 2DIAGNOSTIC, 23, -3.975878623522e-01, 1.351324016859e-06, 2.3174e+01, 6.7867e-01, - 2DIAGNOSTIC, 24, -3.975878623522e-01, 1.302299311660e-06, 2.3844e+01, 6.7018e-01, - 2DIAGNOSTIC, 25, -3.975878623522e-01, 1.260446772920e-06, 2.4676e+01, 8.3123e-01, - 2DIAGNOSTIC, 26, -3.975878623522e-01, 1.221020533043e-06, 2.5363e+01, 6.8715e-01, - 2DIAGNOSTIC, 27, -3.975878623522e-01, 1.178249602253e-06, 2.6022e+01, 6.5915e-01, - 2DIAGNOSTIC, 28, -3.975878623522e-01, 1.136165669942e-06, 2.6731e+01, 7.0876e-01, - 2DIAGNOSTIC, 29, -3.975878623522e-01, 1.096984313893e-06, 2.7448e+01, 7.1771e-01, - 2DIAGNOSTIC, 30, -3.975878623522e-01, 1.060415256347e-06, 2.8145e+01, 6.9689e-01, - 2DIAGNOSTIC, 31, -3.975878623522e-01, 1.026205674784e-06, 2.8915e+01, 7.6923e-01, - Elapsed time (stage 1): 2.9311e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.976747697265e-01, 1.797693134862e+308, 2.5734e-01, 2.5734e-01, - 1DIAGNOSTIC, 2, -9.082126745858e-01, 1.797693134862e+308, 3.5138e-01, 9.4039e-02, - 1DIAGNOSTIC, 3, -9.162673569323e-01, 1.797693134862e+308, 4.4760e-01, 9.6225e-02, - 1DIAGNOSTIC, 4, -9.221759839188e-01, 1.797693134862e+308, 5.4459e-01, 9.6985e-02, - 1DIAGNOSTIC, 5, -9.266638600089e-01, 1.797693134862e+308, 6.4569e-01, 1.0111e-01, - 1DIAGNOSTIC, 6, -9.302238123789e-01, 1.797693134862e+308, 7.4190e-01, 9.6209e-02, - 1DIAGNOSTIC, 7, -9.327609644607e-01, 1.797693134862e+308, 8.4381e-01, 1.0190e-01, - 1DIAGNOSTIC, 8, -9.349555489273e-01, 1.797693134862e+308, 9.4160e-01, 9.7795e-02, - 1DIAGNOSTIC, 9, -9.368767747943e-01, 1.797693134862e+308, 1.0430e+00, 1.0138e-01, - 1DIAGNOSTIC, 10, -9.385621401546e-01, 2.603503301725e-03, 1.1417e+00, 9.8710e-02, - 1DIAGNOSTIC, 11, -9.401291236762e-01, 1.844846941605e-03, 1.2418e+00, 1.0012e-01, - 1DIAGNOSTIC, 12, -9.415793506647e-01, 1.351884205449e-03, 1.3416e+00, 9.9834e-02, - 1DIAGNOSTIC, 13, -9.429516372792e-01, 1.033571777694e-03, 1.4396e+00, 9.7975e-02, - 1DIAGNOSTIC, 14, -9.441937462936e-01, 8.220406064872e-04, 1.5431e+00, 1.0349e-01, - 1DIAGNOSTIC, 15, -9.453045342365e-01, 6.768405951788e-04, 1.6428e+00, 9.9668e-02, - 1DIAGNOSTIC, 16, -9.463793649743e-01, 5.756835208038e-04, 1.7426e+00, 9.9786e-02, - 1DIAGNOSTIC, 17, -9.473565484869e-01, 4.960168045854e-04, 1.8490e+00, 1.0642e-01, - 1DIAGNOSTIC, 18, -9.482918809826e-01, 4.319881633839e-04, 1.9488e+00, 9.9830e-02, - 1DIAGNOSTIC, 19, -9.491957705179e-01, 3.796512979667e-04, 2.0508e+00, 1.0198e-01, - 1DIAGNOSTIC, 20, -9.500299861829e-01, 3.353414203745e-04, 2.1479e+00, 9.7087e-02, - 1DIAGNOSTIC, 21, -9.509067820651e-01, 2.991710257357e-04, 2.2512e+00, 1.0328e-01, - 1DIAGNOSTIC, 22, -9.514591541838e-01, 2.657677060447e-04, 2.3477e+00, 9.6524e-02, - 1DIAGNOSTIC, 23, -9.523071591144e-01, 2.396164243441e-04, 2.4502e+00, 1.0248e-01, - 1DIAGNOSTIC, 24, -9.517182746048e-01, 2.012619346653e-04, 2.5593e+00, 1.0914e-01, - 1DIAGNOSTIC, 25, -9.524516027359e-01, 1.697345841250e-04, 2.6635e+00, 1.0418e-01, - 1DIAGNOSTIC, 26, -9.518790919560e-01, 1.302636059484e-04, 2.7628e+00, 9.9307e-02, - 1DIAGNOSTIC, 27, -9.525093601955e-01, 9.959068901035e-05, 2.8651e+00, 1.0232e-01, - 1DIAGNOSTIC, 28, -9.519633193618e-01, 6.575810820505e-05, 2.9641e+00, 9.9021e-02, - 1DIAGNOSTIC, 29, -9.526686486597e-01, 4.510160601972e-05, 3.0537e+00, 8.9594e-02, - 1DIAGNOSTIC, 30, -9.520842206949e-01, 2.390516474394e-05, 3.1485e+00, 9.4786e-02, - 1DIAGNOSTIC, 31, -9.527482684963e-01, 1.699774477702e-05, 3.2511e+00, 1.0262e-01, - 1DIAGNOSTIC, 32, -9.521903248148e-01, 8.582132770184e-06, 3.3482e+00, 9.7096e-02, - 1DIAGNOSTIC, 33, -9.528641842163e-01, 1.420143108601e-05, 3.4504e+00, 1.0221e-01, - 1DIAGNOSTIC, 34, -9.522857572391e-01, 7.514755233272e-06, 3.5536e+00, 1.0315e-01, - 1DIAGNOSTIC, 35, -9.528992287281e-01, 1.250013433033e-05, 3.6486e+00, 9.4981e-02, - 1DIAGNOSTIC, 36, -9.523612926430e-01, 6.523595067288e-06, 3.7446e+00, 9.6006e-02, - 1DIAGNOSTIC, 37, -9.530170092678e-01, 1.107698681160e-05, 3.8432e+00, 9.8649e-02, - 1DIAGNOSTIC, 38, -9.524350084047e-01, 5.164093004432e-06, 3.9429e+00, 9.9681e-02, - 1DIAGNOSTIC, 39, -9.529867692418e-01, 9.136800949841e-06, 4.0393e+00, 9.6409e-02, - 1DIAGNOSTIC, 40, -9.525166444814e-01, 3.927631877024e-06, 4.1336e+00, 9.4303e-02, - 1DIAGNOSTIC, 41, -9.531468783788e-01, 8.399228935047e-06, 4.2305e+00, 9.6922e-02, - 1DIAGNOSTIC, 42, -9.525625843641e-01, 3.470838406513e-06, 4.3353e+00, 1.0478e-01, - 1DIAGNOSTIC, 43, -9.531117285048e-01, 7.335137643023e-06, 4.4360e+00, 1.0069e-01, - 1DIAGNOSTIC, 44, -9.525567223286e-01, 2.427900742060e-06, 4.5385e+00, 1.0247e-01, - 1DIAGNOSTIC, 45, -9.531630745962e-01, 5.935775387055e-06, 4.6334e+00, 9.4898e-02, - 1DIAGNOSTIC, 46, -9.525830544753e-01, 1.227853232338e-06, 4.7318e+00, 9.8430e-02, - 1DIAGNOSTIC, 47, -9.531188115639e-01, 4.524911381327e-06, 4.8345e+00, 1.0274e-01, - 1DIAGNOSTIC, 48, -9.526592209477e-01, 6.114887417911e-07, 4.9340e+00, 9.9454e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.046037869852e-01, 1.797693134862e+308, 5.7924e+00, 8.5839e-01, - 1DIAGNOSTIC, 2, -9.079477219904e-01, 1.797693134862e+308, 6.4796e+00, 6.8721e-01, - 1DIAGNOSTIC, 3, -9.110033788923e-01, 1.797693134862e+308, 7.1394e+00, 6.5984e-01, - 1DIAGNOSTIC, 4, -9.135774512377e-01, 1.797693134862e+308, 7.8112e+00, 6.7175e-01, - 1DIAGNOSTIC, 5, -9.158039806127e-01, 1.797693134862e+308, 8.4775e+00, 6.6631e-01, - 1DIAGNOSTIC, 6, -9.178019978986e-01, 1.797693134862e+308, 9.1421e+00, 6.6464e-01, - 1DIAGNOSTIC, 7, -9.195521407971e-01, 1.797693134862e+308, 9.8201e+00, 6.7800e-01, - 1DIAGNOSTIC, 8, -9.211746241583e-01, 1.797693134862e+308, 1.0499e+01, 6.7876e-01, - 1DIAGNOSTIC, 9, -9.226086257043e-01, 1.797693134862e+308, 1.1173e+01, 6.7445e-01, - 1DIAGNOSTIC, 10, -9.239789769779e-01, 1.320376822013e-03, 1.1844e+01, 6.7040e-01, - 1DIAGNOSTIC, 11, -9.252650538973e-01, 1.068056484773e-03, 1.2521e+01, 6.7742e-01, - 1DIAGNOSTIC, 12, -9.264888013999e-01, 8.789888126528e-04, 1.3200e+01, 6.7877e-01, - 1DIAGNOSTIC, 13, -9.276572022804e-01, 7.394997894797e-04, 1.3873e+01, 6.7322e-01, - 1DIAGNOSTIC, 14, -9.287475800549e-01, 6.331506091236e-04, 1.4548e+01, 6.7456e-01, - 1DIAGNOSTIC, 15, -9.296815946225e-01, 5.478163104373e-04, 1.5241e+01, 6.9281e-01, - 1DIAGNOSTIC, 16, -9.304841469573e-01, 4.766357615273e-04, 1.5918e+01, 6.7779e-01, - 1DIAGNOSTIC, 17, -9.311820981284e-01, 4.141116440018e-04, 1.6593e+01, 6.7502e-01, - 1DIAGNOSTIC, 18, -9.318053203739e-01, 3.585453989279e-04, 1.7275e+01, 6.8151e-01, - 1DIAGNOSTIC, 19, -9.323493322680e-01, 3.074946516466e-04, 1.7946e+01, 6.7132e-01, - 1DIAGNOSTIC, 20, -9.328330869289e-01, 2.614008368269e-04, 1.8628e+01, 6.8202e-01, - 1DIAGNOSTIC, 21, -9.332616450654e-01, 2.203906801042e-04, 1.9308e+01, 6.8024e-01, - 1DIAGNOSTIC, 22, -9.336573068334e-01, 1.850905966873e-04, 1.9986e+01, 6.7765e-01, - 1DIAGNOSTIC, 23, -9.340125176519e-01, 1.558164937876e-04, 2.0666e+01, 6.8005e-01, - 1DIAGNOSTIC, 24, -9.343275158244e-01, 1.323127188847e-04, 2.1354e+01, 6.8768e-01, - 1DIAGNOSTIC, 25, -9.346226257560e-01, 1.133411494795e-04, 2.2023e+01, 6.6885e-01, - 1DIAGNOSTIC, 26, -9.348821386326e-01, 9.769976942001e-05, 2.2679e+01, 6.5652e-01, - 1DIAGNOSTIC, 27, -9.351171360893e-01, 8.461952027931e-05, 2.3350e+01, 6.7122e-01, - 1DIAGNOSTIC, 28, -9.353344191537e-01, 7.371615607925e-05, 2.4041e+01, 6.9013e-01, - 1DIAGNOSTIC, 29, -9.355438427666e-01, 6.459394550704e-05, 2.4723e+01, 6.8278e-01, - 1DIAGNOSTIC, 30, -9.357322730026e-01, 5.687010496958e-05, 2.5394e+01, 6.7057e-01, - 1DIAGNOSTIC, 31, -9.358958559983e-01, 5.014954745812e-05, 2.6076e+01, 6.8175e-01, - 1DIAGNOSTIC, 32, -9.360546338426e-01, 4.444995600988e-05, 2.6759e+01, 6.8359e-01, - 1DIAGNOSTIC, 33, -9.361847701251e-01, 3.942904614419e-05, 2.7431e+01, 6.7195e-01, - 1DIAGNOSTIC, 34, -9.363115594155e-01, 3.498491953648e-05, 2.8099e+01, 6.6779e-01, - 1DIAGNOSTIC, 35, -9.364252366864e-01, 3.109516017934e-05, 2.8782e+01, 6.8304e-01, - 1DIAGNOSTIC, 36, -9.365315818919e-01, 2.762839376729e-05, 2.9463e+01, 6.8125e-01, - 1DIAGNOSTIC, 37, -9.366216193179e-01, 2.446221041073e-05, 3.0143e+01, 6.7930e-01, - 1DIAGNOSTIC, 38, -9.367132601472e-01, 2.167469751907e-05, 3.0829e+01, 6.8681e-01, - 1DIAGNOSTIC, 39, -9.368154341835e-01, 1.946181802185e-05, 3.1509e+01, 6.7951e-01, - 1DIAGNOSTIC, 40, -9.368902704271e-01, 1.756737055370e-05, 3.2190e+01, 6.8130e-01, - 1DIAGNOSTIC, 41, -9.369585299733e-01, 1.587419998706e-05, 3.2874e+01, 6.8412e-01, - 1DIAGNOSTIC, 42, -9.370215463799e-01, 1.442159266565e-05, 3.3598e+01, 7.2394e-01, - 1DIAGNOSTIC, 43, -9.370797837534e-01, 1.305341297294e-05, 3.4267e+01, 6.6847e-01, - 1DIAGNOSTIC, 44, -9.371355273706e-01, 1.182110914828e-05, 3.4954e+01, 6.8703e-01, - 1DIAGNOSTIC, 45, -9.371808258114e-01, 1.064765220699e-05, 3.5638e+01, 6.8462e-01, - 1DIAGNOSTIC, 46, -9.372237643023e-01, 9.558943235372e-06, 3.6313e+01, 6.7474e-01, - 1DIAGNOSTIC, 47, -9.372619728190e-01, 8.492521571757e-06, 3.7018e+01, 7.0506e-01, - 1DIAGNOSTIC, 48, -9.372972067081e-01, 7.516358928632e-06, 3.7728e+01, 7.0972e-01, - 1DIAGNOSTIC, 49, -9.373277403947e-01, 6.742112180550e-06, 3.8445e+01, 7.1709e-01, - 1DIAGNOSTIC, 50, -9.373545158312e-01, 6.028685595537e-06, 3.9117e+01, 6.7209e-01, - 1DIAGNOSTIC, 51, -9.373862238363e-01, 5.418926587838e-06, 3.9789e+01, 6.7171e-01, - 1DIAGNOSTIC, 52, -9.374093168732e-01, 4.871204816133e-06, 4.0468e+01, 6.7897e-01, - 1DIAGNOSTIC, 53, -9.374302431090e-01, 4.385841932450e-06, 4.1137e+01, 6.6946e-01, - 1DIAGNOSTIC, 54, -9.374473138009e-01, 3.963083304831e-06, 4.1815e+01, 6.7744e-01, - 1DIAGNOSTIC, 55, -9.374726312492e-01, 3.619862109141e-06, 4.2491e+01, 6.7671e-01, - 1DIAGNOSTIC, 56, -9.374865238978e-01, 3.300985571667e-06, 4.3170e+01, 6.7825e-01, - 1DIAGNOSTIC, 57, -9.374981704256e-01, 2.994707316718e-06, 4.3841e+01, 6.7173e-01, - 1DIAGNOSTIC, 58, -9.375058500069e-01, 2.689355215538e-06, 4.4520e+01, 6.7854e-01, - 1DIAGNOSTIC, 59, -9.375128289797e-01, 2.381164543944e-06, 4.5195e+01, 6.7500e-01, - 1DIAGNOSTIC, 60, -9.375152999205e-01, 2.051321994729e-06, 4.5870e+01, 6.7540e-01, - 1DIAGNOSTIC, 61, -9.375207451095e-01, 1.770237619055e-06, 4.6540e+01, 6.7007e-01, - 1DIAGNOSTIC, 62, -9.375230626398e-01, 1.502047518660e-06, 4.7216e+01, 6.7599e-01, - 1DIAGNOSTIC, 63, -9.375236748197e-01, 1.251187109738e-06, 4.7887e+01, 6.7043e-01, - 1DIAGNOSTIC, 64, -9.375216498480e-01, 1.006289317772e-06, 4.8557e+01, 6.6997e-01, - 1DIAGNOSTIC, 65, -9.375165996614e-01, 8.146985818608e-07, 4.9240e+01, 6.8352e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.897857800124e-01, 1.797693134862e+308, 5.4921e+01, 5.6807e+00, - 1DIAGNOSTIC, 2, -8.931952740933e-01, 1.797693134862e+308, 6.0323e+01, 5.4018e+00, - 1DIAGNOSTIC, 3, -8.962494518705e-01, 1.797693134862e+308, 6.5714e+01, 5.3914e+00, - 1DIAGNOSTIC, 4, -8.989336002748e-01, 1.797693134862e+308, 7.1132e+01, 5.4175e+00, - 1DIAGNOSTIC, 5, -9.011925360450e-01, 1.797693134862e+308, 7.6533e+01, 5.4010e+00, - 1DIAGNOSTIC, 6, -9.031344287295e-01, 1.797693134862e+308, 8.1914e+01, 5.3811e+00, - 1DIAGNOSTIC, 7, -9.048444545279e-01, 1.797693134862e+308, 8.7328e+01, 5.4141e+00, - 1DIAGNOSTIC, 8, -9.063911965218e-01, 1.797693134862e+308, 9.2710e+01, 5.3821e+00, - 1DIAGNOSTIC, 9, -9.078081247803e-01, 1.797693134862e+308, 9.8118e+01, 5.4076e+00, - 1DIAGNOSTIC, 10, -9.091131074824e-01, 1.337205544652e-03, 1.0352e+02, 5.3994e+00, - 1DIAGNOSTIC, 11, -9.103468607978e-01, 1.072294042134e-03, 1.0893e+02, 5.4128e+00, - 1DIAGNOSTIC, 12, -9.113210783522e-01, 8.695593925359e-04, 1.1438e+02, 5.4521e+00, - 1DIAGNOSTIC, 13, -9.123947880176e-01, 7.187549514727e-04, 1.1981e+02, 5.4304e+00, - 1DIAGNOSTIC, 14, -9.133201797212e-01, 6.046300108615e-04, 1.2524e+02, 5.4228e+00, - 1DIAGNOSTIC, 15, -9.142312774594e-01, 5.164373165655e-04, 1.3072e+02, 5.4849e+00, - 1DIAGNOSTIC, 16, -9.151025139192e-01, 4.467395134083e-04, 1.3617e+02, 5.4546e+00, - 1DIAGNOSTIC, 17, -9.159472054892e-01, 3.909718600164e-04, 1.4164e+02, 5.4671e+00, - 1DIAGNOSTIC, 18, -9.167255522680e-01, 3.455156792361e-04, 1.4705e+02, 5.4037e+00, - 1DIAGNOSTIC, 19, -9.174472226350e-01, 3.078543929273e-04, 1.5249e+02, 5.4463e+00, - 1DIAGNOSTIC, 20, -9.181116606154e-01, 2.759825854216e-04, 1.5793e+02, 5.4422e+00, - 1DIAGNOSTIC, 21, -9.187293880310e-01, 2.489321298495e-04, 1.6340e+02, 5.4664e+00, - 1DIAGNOSTIC, 22, -9.193082055761e-01, 2.230216733160e-04, 1.6882e+02, 5.4208e+00, - 1DIAGNOSTIC, 23, -9.198432748105e-01, 2.002746311111e-04, 1.7426e+02, 5.4400e+00, - 1DIAGNOSTIC, 24, -9.203414756038e-01, 1.791070846941e-04, 1.7969e+02, 5.4323e+00, - 1DIAGNOSTIC, 25, -9.208086428334e-01, 1.599696556649e-04, 1.8518e+02, 5.4857e+00, - 1DIAGNOSTIC, 26, -9.212448506719e-01, 1.428934570685e-04, 1.9059e+02, 5.4151e+00, - 1DIAGNOSTIC, 27, -9.216542789926e-01, 1.280673531213e-04, 1.9605e+02, 5.4540e+00, - 1DIAGNOSTIC, 28, -9.220394180560e-01, 1.151441505878e-04, 2.0149e+02, 5.4446e+00, - 1DIAGNOSTIC, 29, -9.224003360898e-01, 1.038522046220e-04, 2.0692e+02, 5.4272e+00, - 1DIAGNOSTIC, 30, -9.227481344693e-01, 9.399339613257e-05, 2.1231e+02, 5.3932e+00, - 1DIAGNOSTIC, 31, -9.230708246824e-01, 8.531207047643e-05, 2.1778e+02, 5.4622e+00, - 1DIAGNOSTIC, 32, -9.233544388360e-01, 7.748105809004e-05, 2.2316e+02, 5.3874e+00, - 1DIAGNOSTIC, 33, -9.236036176075e-01, 7.018501637676e-05, 2.2859e+02, 5.4294e+00, - 1DIAGNOSTIC, 34, -9.238327890044e-01, 6.332979192431e-05, 2.3401e+02, 5.4132e+00, - 1DIAGNOSTIC, 35, -9.240388059987e-01, 5.684959583619e-05, 2.3947e+02, 5.4652e+00, - 1DIAGNOSTIC, 36, -9.242243905279e-01, 5.071610405093e-05, 2.4490e+02, 5.4342e+00, - 1DIAGNOSTIC, 37, -9.243985067206e-01, 4.502021806474e-05, 2.5037e+02, 5.4666e+00, - 1DIAGNOSTIC, 38, -9.245538946751e-01, 3.979095179390e-05, 2.5581e+02, 5.4358e+00, - 1DIAGNOSTIC, 39, -9.247066312676e-01, 3.516264261198e-05, 2.6130e+02, 5.4889e+00, - 1DIAGNOSTIC, 40, -9.248488645234e-01, 3.124854903952e-05, 2.6669e+02, 5.3978e+00, - 1DIAGNOSTIC, 41, -9.249871355651e-01, 2.807064027102e-05, 2.7212e+02, 5.4238e+00, - 1DIAGNOSTIC, 42, -9.251196998779e-01, 2.547954624722e-05, 2.7756e+02, 5.4394e+00, - 1DIAGNOSTIC, 43, -9.252436866903e-01, 2.330850537141e-05, 2.8307e+02, 5.5142e+00, - 1DIAGNOSTIC, 44, -9.253647375736e-01, 2.152062319115e-05, 2.8849e+02, 5.4145e+00, - 1DIAGNOSTIC, 45, -9.254856358253e-01, 2.005085771405e-05, 2.9392e+02, 5.4313e+00, - 1DIAGNOSTIC, 46, -9.256036523239e-01, 1.881561460240e-05, 2.9933e+02, 5.4149e+00, - 1DIAGNOSTIC, 47, -9.257226908197e-01, 1.781034094493e-05, 3.0482e+02, 5.4831e+00, - 1DIAGNOSTIC, 48, -9.258425346635e-01, 1.696231321333e-05, 3.1043e+02, 5.6139e+00, - 1DIAGNOSTIC, 49, -9.259655683516e-01, 1.631174656144e-05, 3.1590e+02, 5.4673e+00, - 1DIAGNOSTIC, 50, -9.260898034824e-01, 1.581705762240e-05, 3.2132e+02, 5.4218e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.946694587322e-01, 1.797693134862e+308, 3.6660e+02, 4.5278e+01, - 1DIAGNOSTIC, 2, -8.955366141633e-01, 1.797693134862e+308, 4.1087e+02, 4.4270e+01, - 1DIAGNOSTIC, 3, -8.966087132424e-01, 1.797693134862e+308, 4.5496e+02, 4.4095e+01, - 1DIAGNOSTIC, 4, -8.976974399307e-01, 1.797693134862e+308, 4.9908e+02, 4.4123e+01, - 1DIAGNOSTIC, 5, -8.988101251816e-01, 1.797693134862e+308, 5.4341e+02, 4.4326e+01, - 1DIAGNOSTIC, 6, -8.999626587051e-01, 1.797693134862e+308, 5.8860e+02, 4.5190e+01, - 1DIAGNOSTIC, 7, -9.011201140326e-01, 1.797693134862e+308, 6.3387e+02, 4.5269e+01, - 1DIAGNOSTIC, 8, -9.021841111657e-01, 1.797693134862e+308, 6.7867e+02, 4.4804e+01, - 1DIAGNOSTIC, 9, -9.031209471661e-01, 1.797693134862e+308, 7.2277e+02, 4.4101e+01, - 1DIAGNOSTIC, 10, -9.039732482573e-01, 6.867860852208e-04, 7.6775e+02, 4.4979e+01, - 1DIAGNOSTIC, 11, -9.047207388951e-01, 6.113763000119e-04, 8.1230e+02, 4.4553e+01, - 1DIAGNOSTIC, 12, -9.053068841017e-01, 5.316581384035e-04, 8.5677e+02, 4.4465e+01, - 1DIAGNOSTIC, 13, -9.059200290338e-01, 4.569510743802e-04, 9.0153e+02, 4.4759e+01, - 1DIAGNOSTIC, 14, -9.064064722308e-01, 3.867200736321e-04, 9.4713e+02, 4.5604e+01, - 1DIAGNOSTIC, 15, -9.068541294283e-01, 3.231963952349e-04, 9.9393e+02, 4.6796e+01, - 1DIAGNOSTIC, 16, -9.071833911571e-01, 2.670101416135e-04, 1.0412e+03, 4.7227e+01, - 1DIAGNOSTIC, 17, -9.075951001481e-01, 2.218489363130e-04, 1.0885e+03, 4.7333e+01, - 1DIAGNOSTIC, 18, -9.078812984351e-01, 1.847005048552e-04, 1.1352e+03, 4.6756e+01, - 1DIAGNOSTIC, 19, -9.082536243604e-01, 1.559623163552e-04, 1.1824e+03, 4.7138e+01, - 1DIAGNOSTIC, 20, -9.086169423545e-01, 1.346638863438e-04, 1.2302e+03, 4.7814e+01, - Elapsed time (stage 2): 1231 - - -Total elapsed time: 1285 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:09:49 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:09:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:09:52 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:09:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:00 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31516 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:04 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31564 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:04 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/anat/sub-PNC004_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:07 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:07 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31613 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:07 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31622 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:07 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:11 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:14 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:14 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:15 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:16 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:18 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:18 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:19 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/surf/sub-PNC004_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC004_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC004 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:23 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:32 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03/sub-PNC004_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC004 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:44 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC004 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:44 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC004_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC004 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:45 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 357 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:46 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:46 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc/sub-PNC004_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/xfm/sub-PNC004_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 397 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:48 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:48 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC004_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC004_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 72.583 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/logs/proc_func_18-03-2024-11394.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:54 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC004 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC004/ses-03/QC/sub-PNC004_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27768_micapipe_proc-func_sub-PNC004_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC004* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 72.633 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC004_ses-03 -========================reprocessing without filter=================== -sub-PNC005_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC005 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC005 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC005 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC005 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:58 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:10:58 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-1_bold.nii.gz is 37.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:13:05 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:15:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:15:26 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.32 (mm) at sub-brick 208 -++ Max delta displ in automask = 0.29 (mm) at sub-brick 6 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:28:24 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:28:42 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-2_bold.nii.gz is 37.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:30:50 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:32:59 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-01/func/sub-PNC005_ses-01_task-rest_echo-3_bold.nii.gz is 37.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:35:10 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.306 -1.935 2.974 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.1 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.382 -3.119 5.323 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.7 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:40:00 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:40:28 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x561600567a50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 55.1232, -119.779] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5616003de730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56160057e350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x56160056e600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [77.8036, 106.609, -151.036] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x561600570e40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x561600d7af50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x561600d79270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 55.1232, -119.779] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56160056d640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5616018a51c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x561600d78a00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [77.8036, 106.609, -151.036] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x561600574390) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56160209f300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.155825191592e-01, 1.797693134862e+308, 4.0687e-02, 4.0686e-02, - 2DIAGNOSTIC, 2, -6.174859775451e-01, 1.797693134862e+308, 4.1833e-02, 1.1461e-03, - 2DIAGNOSTIC, 3, -6.217386016679e-01, 1.797693134862e+308, 4.2922e-02, 1.0891e-03, - 2DIAGNOSTIC, 4, -6.364952145501e-01, 1.797693134862e+308, 4.4055e-02, 1.1330e-03, - 2DIAGNOSTIC, 5, -6.533021685051e-01, 1.797693134862e+308, 4.5192e-02, 1.1370e-03, - 2DIAGNOSTIC, 6, -6.668281213594e-01, 1.797693134862e+308, 4.6339e-02, 1.1468e-03, - 2DIAGNOSTIC, 7, -6.861752870633e-01, 1.797693134862e+308, 4.7884e-02, 1.5452e-03, - 2DIAGNOSTIC, 8, -6.971756907123e-01, 1.797693134862e+308, 4.9173e-02, 1.2891e-03, - 2DIAGNOSTIC, 9, -7.022522785306e-01, 1.797693134862e+308, 5.0644e-02, 1.4708e-03, - 2DIAGNOSTIC, 10, -7.139798157032e-01, 1.078702923800e-02, 5.2629e-02, 1.9851e-03, - 2DIAGNOSTIC, 11, -7.206004781832e-01, 9.831560364520e-03, 5.5116e-02, 2.4872e-03, - 2DIAGNOSTIC, 12, -7.215982833492e-01, 8.271239802713e-03, 5.6623e-02, 1.5070e-03, - 2DIAGNOSTIC, 13, -7.234838095457e-01, 6.421574095839e-03, 5.8352e-02, 1.7290e-03, - 2DIAGNOSTIC, 14, -7.243485379640e-01, 4.737227131676e-03, 5.9857e-02, 1.5049e-03, - 2DIAGNOSTIC, 15, -7.248440029566e-01, 3.336298840863e-03, 6.1617e-02, 1.7600e-03, - 2DIAGNOSTIC, 16, -7.254634792291e-01, 2.171046343969e-03, 6.3811e-02, 2.1932e-03, - 2DIAGNOSTIC, 17, -7.256718265064e-01, 1.424895549424e-03, 6.5569e-02, 1.7588e-03, - 2DIAGNOSTIC, 18, -7.263987637711e-01, 9.054080395242e-04, 6.7002e-02, 1.4329e-03, - 2DIAGNOSTIC, 19, -7.265914591321e-01, 4.680758818304e-04, 6.8730e-02, 1.7281e-03, - 2DIAGNOSTIC, 20, -7.268231191355e-01, 2.755083320761e-04, 7.0219e-02, 1.4889e-03, - 2DIAGNOSTIC, 21, -7.266975632161e-01, 2.033167941754e-04, 7.1712e-02, 1.4930e-03, - 2DIAGNOSTIC, 22, -7.274820243864e-01, 1.516162445861e-04, 7.3204e-02, 1.4920e-03, - 2DIAGNOSTIC, 23, -7.277002814441e-01, 1.271114367708e-04, 7.5376e-02, 2.1720e-03, - 2DIAGNOSTIC, 24, -7.283534051176e-01, 1.185460057876e-04, 7.6872e-02, 1.4958e-03, - 2DIAGNOSTIC, 25, -7.300012401890e-01, 1.343383499681e-04, 7.8595e-02, 1.7231e-03, - 2DIAGNOSTIC, 26, -7.437327513008e-01, 3.593768829714e-04, 8.1427e-02, 2.8322e-03, - 2DIAGNOSTIC, 27, -7.438485238256e-01, 5.321312326708e-04, 8.2861e-02, 1.4338e-03, - 2DIAGNOSTIC, 28, -7.440332074263e-01, 6.575353790567e-04, 8.4288e-02, 1.4269e-03, - 2DIAGNOSTIC, 29, -7.449045478594e-01, 7.295643914731e-04, 8.5749e-02, 1.4608e-03, - 2DIAGNOSTIC, 30, -7.464428281274e-01, 7.502857372493e-04, 8.7428e-02, 1.6789e-03, - 2DIAGNOSTIC, 31, -7.506762497949e-01, 7.482158671398e-04, 8.9126e-02, 1.6980e-03, - 2DIAGNOSTIC, 32, -7.548641543588e-01, 7.362475146029e-04, 9.0632e-02, 1.5061e-03, - 2DIAGNOSTIC, 33, -7.551169516657e-01, 6.632547287882e-04, 9.2122e-02, 1.4899e-03, - 2DIAGNOSTIC, 34, -7.619539804834e-01, 6.221862476909e-04, 9.3641e-02, 1.5190e-03, - 2DIAGNOSTIC, 35, -7.849192670725e-01, 7.973758538711e-04, 9.5389e-02, 1.7481e-03, - 2DIAGNOSTIC, 36, -9.067556917600e-01, 2.360703430679e-03, 9.7581e-02, 2.1920e-03, - 2DIAGNOSTIC, 37, -8.909678489613e-01, 3.398060397786e-03, 9.9725e-02, 2.1439e-03, - 2DIAGNOSTIC, 38, -8.935955501038e-01, 4.099258557309e-03, 1.0161e-01, 1.8861e-03, - 2DIAGNOSTIC, 39, -8.942340646393e-01, 4.399028822305e-03, 1.0307e-01, 1.4551e-03, - 2DIAGNOSTIC, 40, -8.959845820681e-01, 4.283501203790e-03, 1.0451e-01, 1.4398e-03, - 2DIAGNOSTIC, 41, -8.964222058425e-01, 3.792332791649e-03, 1.0596e-01, 1.4522e-03, - 2DIAGNOSTIC, 42, -8.967308992098e-01, 3.012281677611e-03, 1.0741e-01, 1.4479e-03, - 2DIAGNOSTIC, 43, -8.981268506600e-01, 2.022375671816e-03, 1.0884e-01, 1.4310e-03, - 2DIAGNOSTIC, 44, -8.988567706759e-01, 9.630438423188e-04, 1.1035e-01, 1.5180e-03, - 2DIAGNOSTIC, 45, -9.040536010511e-01, 7.279260473548e-05, 1.1203e-01, 1.6780e-03, - 2DIAGNOSTIC, 46, -9.070432787884e-01, 2.410457986502e-04, 1.1373e-01, 1.6999e-03, - 2DIAGNOSTIC, 47, -8.894965495830e-01, 1.129329402281e-04, 1.1659e-01, 2.8589e-03, - 2DIAGNOSTIC, 48, -8.925418136172e-01, 2.895738610762e-05, 1.1807e-01, 1.4791e-03, - 2DIAGNOSTIC, 49, -9.041900791837e-01, 3.670389856322e-05, 1.2019e-01, 2.1229e-03, - 2DIAGNOSTIC, 50, -9.117846073279e-01, 1.046680785887e-04, 1.2166e-01, 1.4670e-03, - 2DIAGNOSTIC, 51, -9.138069178279e-01, 1.772033089477e-04, 1.2333e-01, 1.6670e-03, - 2DIAGNOSTIC, 52, -9.149284465745e-01, 2.435286573700e-04, 1.2503e-01, 1.6980e-03, - 2DIAGNOSTIC, 53, -9.139847781552e-01, 2.880327072049e-04, 1.2673e-01, 1.7040e-03, - 2DIAGNOSTIC, 54, -9.180139582077e-01, 3.313672422241e-04, 1.2842e-01, 1.6921e-03, - 2DIAGNOSTIC, 55, -9.227398547676e-01, 4.030737485472e-04, 1.3014e-01, 1.7190e-03, - 2DIAGNOSTIC, 56, -9.236585542421e-01, 4.620886578000e-04, 1.3183e-01, 1.6870e-03, - 2DIAGNOSTIC, 57, -9.252614338810e-01, 3.752061832758e-04, 1.3336e-01, 1.5371e-03, - 2DIAGNOSTIC, 58, -9.267854535179e-01, 2.831770875187e-04, 1.3507e-01, 1.7049e-03, - 2DIAGNOSTIC, 59, -9.518599726642e-01, 3.889099076478e-04, 1.3676e-01, 1.6921e-03, - 2DIAGNOSTIC, 60, -9.688521752239e-01, 5.943251171210e-04, 1.3828e-01, 1.5180e-03, - 2DIAGNOSTIC, 61, -9.804517332732e-01, 8.128383841732e-04, 1.3999e-01, 1.7090e-03, - 2DIAGNOSTIC, 62, -1.026626515243e+00, 1.216190120003e-03, 1.4170e-01, 1.7061e-03, - 2DIAGNOSTIC, 63, -1.040331828826e+00, 1.551689148440e-03, 1.4316e-01, 1.4620e-03, - 2DIAGNOSTIC, 64, -1.045870567095e+00, 1.775983853656e-03, 1.4558e-01, 2.4180e-03, - 2DIAGNOSTIC, 65, -1.052710365336e+00, 1.884942902618e-03, 1.4726e-01, 1.6809e-03, - 2DIAGNOSTIC, 66, -1.053508848306e+00, 1.818167861381e-03, 1.4870e-01, 1.4460e-03, - 2DIAGNOSTIC, 67, -1.058332529727e+00, 1.611637218254e-03, 1.5038e-01, 1.6761e-03, - 2DIAGNOSTIC, 68, -1.063381631285e+00, 1.287580486647e-03, 1.5186e-01, 1.4849e-03, - 2DIAGNOSTIC, 69, -1.090504031839e+00, 1.111778762253e-03, 1.5401e-01, 2.1501e-03, - 2DIAGNOSTIC, 70, -1.098621877718e+00, 9.565956296047e-04, 1.5545e-01, 1.4360e-03, - 2DIAGNOSTIC, 71, -1.099262284631e+00, 7.693874800862e-04, 1.5690e-01, 1.4532e-03, - 2DIAGNOSTIC, 72, -1.100990127315e+00, 7.411252701312e-04, 1.5836e-01, 1.4589e-03, - 2DIAGNOSTIC, 73, -1.103912714486e+00, 7.185922583081e-04, 1.6003e-01, 1.6642e-03, - 2DIAGNOSTIC, 74, -1.114556250852e+00, 6.980552680618e-04, 1.6172e-01, 1.6971e-03, - 2DIAGNOSTIC, 75, -1.116449464165e+00, 6.484414366942e-04, 1.6409e-01, 2.3689e-03, - 2DIAGNOSTIC, 76, -1.116922781614e+00, 5.457304153739e-04, 1.6960e-01, 5.5070e-03, - 2DIAGNOSTIC, 77, -1.116922497323e+00, 4.167723426490e-04, 1.7105e-01, 1.4501e-03, - 2DIAGNOSTIC, 78, -1.116922616582e+00, 2.703411148189e-04, 1.7249e-01, 1.4451e-03, - 2DIAGNOSTIC, 79, -1.116922818325e+00, 2.139896235573e-04, 1.7395e-01, 1.4520e-03, - 2DIAGNOSTIC, 80, -1.116923159439e+00, 1.720474603834e-04, 1.7542e-01, 1.4789e-03, - 2DIAGNOSTIC, 81, -1.116923736166e+00, 1.180842062505e-04, 1.7685e-01, 1.4241e-03, - 2DIAGNOSTIC, 82, -1.116924711143e+00, 6.163084676695e-05, 1.7828e-01, 1.4329e-03, - 2DIAGNOSTIC, 83, -1.116926359075e+00, 1.137035743880e-05, 1.7968e-01, 1.3971e-03, - 2DIAGNOSTIC, 84, -1.116929143594e+00, 2.346230038610e-06, 1.8115e-01, 1.4749e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.018837884138e-01, 1.797693134862e+308, 2.2674e-01, 4.5591e-02, - 2DIAGNOSTIC, 2, -7.019436811734e-01, 1.797693134862e+308, 2.2933e-01, 2.5859e-03, - 2DIAGNOSTIC, 3, -7.034566325784e-01, 1.797693134862e+308, 2.3179e-01, 2.4600e-03, - 2DIAGNOSTIC, 4, -7.055057516008e-01, 1.797693134862e+308, 2.3408e-01, 2.2950e-03, - 2DIAGNOSTIC, 5, -7.096187402805e-01, 1.797693134862e+308, 2.3627e-01, 2.1861e-03, - 2DIAGNOSTIC, 6, -7.176609804979e-01, 1.797693134862e+308, 2.3847e-01, 2.1949e-03, - 2DIAGNOSTIC, 7, -7.218730775263e-01, 1.797693134862e+308, 2.4116e-01, 2.6951e-03, - 2DIAGNOSTIC, 8, -7.240399639800e-01, 1.797693134862e+308, 2.4353e-01, 2.3718e-03, - 2DIAGNOSTIC, 9, -7.258099046138e-01, 1.797693134862e+308, 2.4566e-01, 2.1310e-03, - 2DIAGNOSTIC, 10, -7.367432571622e-01, 3.149229820030e-03, 2.4834e-01, 2.6741e-03, - 2DIAGNOSTIC, 11, -7.418317105134e-01, 3.268116770148e-03, 2.5089e-01, 2.5570e-03, - 2DIAGNOSTIC, 12, -7.427456756111e-01, 3.104853466803e-03, 2.5344e-01, 2.5439e-03, - 2DIAGNOSTIC, 13, -7.432558103931e-01, 2.757609983404e-03, 2.5568e-01, 2.2459e-03, - 2DIAGNOSTIC, 14, -7.439833802662e-01, 2.290839986856e-03, 2.5800e-01, 2.3129e-03, - 2DIAGNOSTIC, 15, -7.463801282227e-01, 1.840089027678e-03, 2.6154e-01, 3.5439e-03, - 2DIAGNOSTIC, 16, -7.466470244466e-01, 1.476313493011e-03, 2.6437e-01, 2.8300e-03, - 2DIAGNOSTIC, 17, -7.468403593229e-01, 1.125359866753e-03, 2.6674e-01, 2.3720e-03, - 2DIAGNOSTIC, 18, -7.474418826782e-01, 7.748004452501e-04, 2.6917e-01, 2.4252e-03, - 2DIAGNOSTIC, 19, -7.492438588106e-01, 4.581829013866e-04, 2.7224e-01, 3.0711e-03, - 2DIAGNOSTIC, 20, -7.495739972664e-01, 3.467260880783e-04, 2.7491e-01, 2.6710e-03, - 2DIAGNOSTIC, 21, -7.498393077489e-01, 3.131176457365e-04, 2.7722e-01, 2.3129e-03, - 2DIAGNOSTIC, 22, -7.507287469807e-01, 2.863138445195e-04, 2.8012e-01, 2.9011e-03, - 2DIAGNOSTIC, 23, -7.511941781293e-01, 2.513440603275e-04, 2.8268e-01, 2.5561e-03, - 2DIAGNOSTIC, 24, -7.513801740878e-01, 2.091704559959e-04, 2.8525e-01, 2.5671e-03, - 2DIAGNOSTIC, 25, -7.520815351352e-01, 1.989924522368e-04, 2.8808e-01, 2.8281e-03, - 2DIAGNOSTIC, 26, -7.528896645592e-01, 1.871911841704e-04, 2.9056e-01, 2.4800e-03, - 2DIAGNOSTIC, 27, -7.529599214921e-01, 1.622767656398e-04, 2.9272e-01, 2.1660e-03, - 2DIAGNOSTIC, 28, -7.529917260452e-01, 1.322330053853e-04, 2.9516e-01, 2.4381e-03, - 2DIAGNOSTIC, 29, -7.531898406272e-01, 1.187153362462e-04, 2.9793e-01, 2.7671e-03, - 2DIAGNOSTIC, 30, -7.533140539474e-01, 1.007266164927e-04, 3.0011e-01, 2.1839e-03, - 2DIAGNOSTIC, 31, -7.533331187997e-01, 7.760610019965e-05, 3.0255e-01, 2.4369e-03, - 2DIAGNOSTIC, 32, -7.533650509669e-01, 5.979163615109e-05, 3.0473e-01, 2.1832e-03, - 2DIAGNOSTIC, 33, -7.534024528508e-01, 4.355367452465e-05, 3.0696e-01, 2.2268e-03, - 2DIAGNOSTIC, 34, -7.535206659723e-01, 2.753555994724e-05, 3.0948e-01, 2.5251e-03, - 2DIAGNOSTIC, 35, -7.535599008040e-01, 1.775602567132e-05, 3.1259e-01, 3.1030e-03, - 2DIAGNOSTIC, 36, -7.535704383960e-01, 1.567840393971e-05, 3.1475e-01, 2.1670e-03, - 2DIAGNOSTIC, 37, -7.535900776318e-01, 1.329190725234e-05, 3.1694e-01, 2.1830e-03, - 2DIAGNOSTIC, 38, -7.536915400323e-01, 1.114716245477e-05, 3.1941e-01, 2.4729e-03, - 2DIAGNOSTIC, 39, -7.537143686977e-01, 1.023097867446e-05, 3.2161e-01, 2.1970e-03, - 2DIAGNOSTIC, 40, -7.539262477861e-01, 1.168701981055e-05, 3.2504e-01, 3.4349e-03, - 2DIAGNOSTIC, 41, -7.539171755526e-01, 1.209788218346e-05, 3.2728e-01, 2.2380e-03, - 2DIAGNOSTIC, 42, -7.538475025725e-01, 1.109652784149e-05, 3.2954e-01, 2.2600e-03, - 2DIAGNOSTIC, 43, -7.538677104082e-01, 9.675435515506e-06, 3.3177e-01, 2.2340e-03, - 2DIAGNOSTIC, 44, -7.540795762524e-01, 1.030463447423e-05, 3.3503e-01, 3.2532e-03, - 2DIAGNOSTIC, 45, -7.540861233372e-01, 1.030320235119e-05, 3.3766e-01, 2.6381e-03, - 2DIAGNOSTIC, 46, -7.540900501285e-01, 9.532936062658e-06, 3.4006e-01, 2.3999e-03, - 2DIAGNOSTIC, 47, -7.540258300002e-01, 7.631847968835e-06, 3.4242e-01, 2.3530e-03, - 2DIAGNOSTIC, 48, -7.540382286336e-01, 6.075469261114e-06, 3.4471e-01, 2.2919e-03, - 2DIAGNOSTIC, 49, -7.540561092331e-01, 4.289262236560e-06, 3.4692e-01, 2.2080e-03, - 2DIAGNOSTIC, 50, -7.541666708307e-01, 4.670994528520e-06, 3.4946e-01, 2.5461e-03, - 2DIAGNOSTIC, 51, -7.546582187774e-01, 8.287163685963e-06, 3.5706e-01, 7.6010e-03, - 2DIAGNOSTIC, 52, -7.546582186476e-01, 1.044815449174e-05, 3.6458e-01, 7.5130e-03, - 2DIAGNOSTIC, 53, -7.546582186476e-01, 1.174168800948e-05, 3.6706e-01, 2.4850e-03, - 2DIAGNOSTIC, 54, -7.546582186476e-01, 1.345797293308e-05, 3.7026e-01, 3.2010e-03, - 2DIAGNOSTIC, 55, -7.546582186476e-01, 1.389060726475e-05, 3.7366e-01, 3.4010e-03, - 2DIAGNOSTIC, 56, -7.546582186476e-01, 1.301272580768e-05, 3.7618e-01, 2.5179e-03, - 2DIAGNOSTIC, 57, -7.546582186476e-01, 1.054022115795e-05, 3.7870e-01, 2.5170e-03, - 2DIAGNOSTIC, 58, -7.546582186476e-01, 7.334908555402e-06, 3.8094e-01, 2.2409e-03, - 2DIAGNOSTIC, 59, -7.546582186476e-01, 3.721089170655e-06, 3.8348e-01, 2.5449e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.041018259422e-01, 1.797693134862e+308, 4.5216e-01, 6.8676e-02, - 2DIAGNOSTIC, 2, -6.048451641558e-01, 1.797693134862e+308, 4.6414e-01, 1.1980e-02, - 2DIAGNOSTIC, 3, -6.056926658468e-01, 1.797693134862e+308, 4.7560e-01, 1.1462e-02, - 2DIAGNOSTIC, 4, -6.063217980402e-01, 1.797693134862e+308, 4.8723e-01, 1.1622e-02, - 2DIAGNOSTIC, 5, -6.067550234934e-01, 1.797693134862e+308, 4.9868e-01, 1.1451e-02, - 2DIAGNOSTIC, 6, -6.072385617829e-01, 1.797693134862e+308, 5.1006e-01, 1.1387e-02, - 2DIAGNOSTIC, 7, -6.080007332589e-01, 1.797693134862e+308, 5.2303e-01, 1.2970e-02, - 2DIAGNOSTIC, 8, -6.101188089952e-01, 1.797693134862e+308, 5.3931e-01, 1.6280e-02, - 2DIAGNOSTIC, 9, -6.105625051339e-01, 1.797693134862e+308, 5.5223e-01, 1.2919e-02, - 2DIAGNOSTIC, 10, -6.106834515161e-01, 7.306456934497e-04, 5.6395e-01, 1.1719e-02, - 2DIAGNOSTIC, 11, -6.107911698354e-01, 6.397386350414e-04, 5.7638e-01, 1.2426e-02, - 2DIAGNOSTIC, 12, -6.109372772788e-01, 5.405724426174e-04, 5.8796e-01, 1.1580e-02, - 2DIAGNOSTIC, 13, -6.112056155008e-01, 4.466155650610e-04, 6.0400e-01, 1.6039e-02, - 2DIAGNOSTIC, 14, -6.112524140191e-01, 3.478887163330e-04, 6.1709e-01, 1.3096e-02, - 2DIAGNOSTIC, 15, -6.113203520502e-01, 2.473736704444e-04, 6.3232e-01, 1.5226e-02, - 2DIAGNOSTIC, 16, -6.115803259539e-01, 1.590033359466e-04, 6.4557e-01, 1.3255e-02, - 2DIAGNOSTIC, 17, -6.115985843100e-01, 8.631351653809e-05, 6.5767e-01, 1.2096e-02, - 2DIAGNOSTIC, 18, -6.116753248707e-01, 7.053892583559e-05, 6.7025e-01, 1.2583e-02, - 2DIAGNOSTIC, 19, -6.118290476211e-01, 6.473704014019e-05, 6.8368e-01, 1.3430e-02, - 2DIAGNOSTIC, 20, -6.118557822141e-01, 5.704632731339e-05, 6.9868e-01, 1.5001e-02, - 2DIAGNOSTIC, 21, -6.119097779237e-01, 4.845977218979e-05, 7.1030e-01, 1.1618e-02, - 2DIAGNOSTIC, 22, -6.119299164796e-01, 3.966374475641e-05, 7.2183e-01, 1.1527e-02, - 2DIAGNOSTIC, 23, -6.120827454711e-01, 3.664173881821e-05, 7.3821e-01, 1.6386e-02, - 2DIAGNOSTIC, 24, -6.121248727037e-01, 3.220284941008e-05, 7.5151e-01, 1.3291e-02, - 2DIAGNOSTIC, 25, -6.121460648922e-01, 2.676641388589e-05, 7.6280e-01, 1.1298e-02, - 2DIAGNOSTIC, 26, -6.121703179436e-01, 2.452115194690e-05, 7.7451e-01, 1.1710e-02, - 2DIAGNOSTIC, 27, -6.122585895603e-01, 2.207330151460e-05, 7.8600e-01, 1.1491e-02, - 2DIAGNOSTIC, 28, -6.125166781726e-01, 2.326845911049e-05, 8.0486e-01, 1.8852e-02, - 2DIAGNOSTIC, 29, -6.125167161205e-01, 2.464692686856e-05, 8.1953e-01, 1.4677e-02, - 2DIAGNOSTIC, 30, -6.125167340954e-01, 2.420184520656e-05, 8.3547e-01, 1.5932e-02, - 2DIAGNOSTIC, 31, -6.125167347737e-01, 2.248675602631e-05, 8.4707e-01, 1.1602e-02, - 2DIAGNOSTIC, 32, -6.125167348614e-01, 1.905070329587e-05, 8.5945e-01, 1.2379e-02, - 2DIAGNOSTIC, 33, -6.125167348921e-01, 1.619324547943e-05, 8.7043e-01, 1.0986e-02, - 2DIAGNOSTIC, 34, -6.125167349038e-01, 1.263780057525e-05, 8.8010e-01, 9.6681e-03, - 2DIAGNOSTIC, 35, -6.125167349760e-01, 8.517250843762e-06, 8.8985e-01, 9.7458e-03, - 2DIAGNOSTIC, 36, -6.125167351044e-01, 4.224109766578e-06, 8.9946e-01, 9.6090e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.198075882368e-01, 1.797693134862e+308, 1.0682e+00, 1.6874e-01, - Elapsed time (stage 0): 1.0972e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -1.050074121554e+00, 1.797693134862e+308, 3.7121e-02, 3.7120e-02, - 2DIAGNOSTIC, 2, -1.052130515822e+00, 1.797693134862e+308, 3.8212e-02, 1.0910e-03, - 2DIAGNOSTIC, 3, -1.054450238724e+00, 1.797693134862e+308, 3.9328e-02, 1.1160e-03, - 2DIAGNOSTIC, 4, -1.059873943988e+00, 1.797693134862e+308, 4.0490e-02, 1.1621e-03, - 2DIAGNOSTIC, 5, -1.066284551592e+00, 1.797693134862e+308, 4.1704e-02, 1.2140e-03, - 2DIAGNOSTIC, 6, -1.077099354543e+00, 1.797693134862e+308, 4.2921e-02, 1.2171e-03, - 2DIAGNOSTIC, 7, -1.108711305712e+00, 1.797693134862e+308, 4.4343e-02, 1.4222e-03, - 2DIAGNOSTIC, 8, -1.146347062611e+00, 1.797693134862e+308, 4.6157e-02, 1.8139e-03, - 2DIAGNOSTIC, 9, -1.149425856958e+00, 1.797693134862e+308, 4.7561e-02, 1.4038e-03, - 2DIAGNOSTIC, 10, -1.150375102173e+00, 7.148551861500e-03, 4.9141e-02, 1.5800e-03, - 2DIAGNOSTIC, 11, -1.157155925880e+00, 6.931645514679e-03, 5.0727e-02, 1.5860e-03, - 2DIAGNOSTIC, 12, -1.157139317537e+00, 6.162078477539e-03, 5.2212e-02, 1.4851e-03, - 2DIAGNOSTIC, 13, -1.160587533647e+00, 5.063780117658e-03, 5.3772e-02, 1.5600e-03, - 2DIAGNOSTIC, 14, -1.162654112201e+00, 3.812759388348e-03, 5.6225e-02, 2.4531e-03, - 2DIAGNOSTIC, 15, -1.161294745932e+00, 2.485515829075e-03, 5.7712e-02, 1.4870e-03, - 2DIAGNOSTIC, 16, -1.162009831619e+00, 1.280509899930e-03, 5.8999e-02, 1.2870e-03, - 2DIAGNOSTIC, 17, -1.161089569522e+00, 5.474601961999e-04, 6.0314e-02, 1.3151e-03, - 2DIAGNOSTIC, 18, -1.162165738062e+00, 3.928337023458e-04, 6.1834e-02, 1.5199e-03, - 2DIAGNOSTIC, 19, -1.162862120996e+00, 2.688391047570e-04, 6.4214e-02, 2.3799e-03, - 2DIAGNOSTIC, 20, -1.155416016902e+00, 4.904659996714e-05, 6.5811e-02, 1.5969e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.991083416077e-01, 1.797693134862e+308, 1.0795e-01, 4.2138e-02, - 2DIAGNOSTIC, 2, -8.010962835286e-01, 1.797693134862e+308, 1.1040e-01, 2.4500e-03, - 2DIAGNOSTIC, 3, -8.053418708427e-01, 1.797693134862e+308, 1.1286e-01, 2.4641e-03, - 2DIAGNOSTIC, 4, -8.111533500527e-01, 1.797693134862e+308, 1.1525e-01, 2.3839e-03, - 2DIAGNOSTIC, 5, -8.187103380365e-01, 1.797693134862e+308, 1.1745e-01, 2.2070e-03, - 2DIAGNOSTIC, 6, -8.278928311537e-01, 1.797693134862e+308, 1.1959e-01, 2.1319e-03, - 2DIAGNOSTIC, 7, -8.404049162268e-01, 1.797693134862e+308, 1.2177e-01, 2.1880e-03, - 2DIAGNOSTIC, 8, -8.539196572822e-01, 1.797693134862e+308, 1.2432e-01, 2.5420e-03, - 2DIAGNOSTIC, 9, -8.643605635660e-01, 1.797693134862e+308, 1.2721e-01, 2.8980e-03, - 2DIAGNOSTIC, 10, -8.676287633523e-01, 5.936854638549e-03, 1.2969e-01, 2.4729e-03, - 2DIAGNOSTIC, 11, -8.708109580530e-01, 5.587298195234e-03, 1.3218e-01, 2.4979e-03, - 2DIAGNOSTIC, 12, -8.731504547903e-01, 4.918065197820e-03, 1.3561e-01, 3.4282e-03, - 2DIAGNOSTIC, 13, -8.738394421044e-01, 4.036400942690e-03, 1.3802e-01, 2.4111e-03, - 2DIAGNOSTIC, 14, -8.746257665551e-01, 3.077229417943e-03, 1.4046e-01, 2.4371e-03, - 2DIAGNOSTIC, 15, -8.750160059585e-01, 2.149602717361e-03, 1.4417e-01, 3.7041e-03, - 2DIAGNOSTIC, 16, -8.755656312521e-01, 1.347912773557e-03, 1.4696e-01, 2.7940e-03, - 2DIAGNOSTIC, 17, -8.764810004776e-01, 7.796863163092e-04, 1.5100e-01, 4.0400e-03, - 2DIAGNOSTIC, 18, -8.764824012320e-01, 4.516710748494e-04, 1.5377e-01, 2.7752e-03, - 2DIAGNOSTIC, 19, -8.764047138200e-01, 2.995997949423e-04, 1.5639e-01, 2.6171e-03, - 2DIAGNOSTIC, 20, -8.765095791266e-01, 1.910263430269e-04, 1.5888e-01, 2.4889e-03, - 2DIAGNOSTIC, 21, -8.768038805343e-01, 1.295919656065e-04, 1.6159e-01, 2.7089e-03, - 2DIAGNOSTIC, 22, -8.770300824865e-01, 1.003016903447e-04, 1.6420e-01, 2.6138e-03, - 2DIAGNOSTIC, 23, -8.770062965148e-01, 7.380868782489e-05, 1.6687e-01, 2.6670e-03, - 2DIAGNOSTIC, 24, -8.769777063111e-01, 5.354968168760e-05, 1.6975e-01, 2.8832e-03, - 2DIAGNOSTIC, 25, -8.770822367986e-01, 3.657597866415e-05, 1.7230e-01, 2.5458e-03, - 2DIAGNOSTIC, 26, -8.773295854563e-01, 2.730240309973e-05, 1.7486e-01, 2.5561e-03, - 2DIAGNOSTIC, 27, -8.779123579723e-01, 3.452096479999e-05, 1.7733e-01, 2.4791e-03, - 2DIAGNOSTIC, 28, -8.793112401030e-01, 5.456450579525e-05, 1.8013e-01, 2.7981e-03, - 2DIAGNOSTIC, 29, -8.799824539868e-01, 7.463743993311e-05, 1.8329e-01, 3.1600e-03, - 2DIAGNOSTIC, 30, -8.813024204234e-01, 1.020582977166e-04, 1.8616e-01, 2.8701e-03, - 2DIAGNOSTIC, 31, -8.824134199204e-01, 1.328486351340e-04, 1.8870e-01, 2.5370e-03, - 2DIAGNOSTIC, 32, -8.826152967391e-01, 1.534040056894e-04, 1.9185e-01, 3.1481e-03, - 2DIAGNOSTIC, 33, -8.828732136489e-01, 1.606462329247e-04, 1.9437e-01, 2.5241e-03, - 2DIAGNOSTIC, 34, -8.829835677249e-01, 1.531071253238e-04, 1.9817e-01, 3.7940e-03, - 2DIAGNOSTIC, 35, -8.829927336380e-01, 1.326011916176e-04, 2.0072e-01, 2.5561e-03, - 2DIAGNOSTIC, 36, -8.831589877779e-01, 1.044483011979e-04, 2.0340e-01, 2.6789e-03, - 2DIAGNOSTIC, 37, -8.833293774937e-01, 7.449504690909e-05, 2.0606e-01, 2.6610e-03, - 2DIAGNOSTIC, 38, -8.837374208008e-01, 5.481676062109e-05, 2.0884e-01, 2.7819e-03, - 2DIAGNOSTIC, 39, -8.845572650474e-01, 4.331647770375e-05, 2.1171e-01, 2.8670e-03, - 2DIAGNOSTIC, 40, -8.849372555470e-01, 4.194996070739e-05, 2.1438e-01, 2.6700e-03, - 2DIAGNOSTIC, 41, -8.850613601773e-01, 4.661558614948e-05, 2.1710e-01, 2.7199e-03, - 2DIAGNOSTIC, 42, -8.855600509212e-01, 5.217363469091e-05, 2.1987e-01, 2.7728e-03, - 2DIAGNOSTIC, 43, -8.856977572633e-01, 5.543940082305e-05, 2.2232e-01, 2.4419e-03, - 2DIAGNOSTIC, 44, -8.865258980972e-01, 6.024973199632e-05, 2.2543e-01, 3.1159e-03, - 2DIAGNOSTIC, 45, -8.873382029114e-01, 6.498012769540e-05, 2.2797e-01, 2.5430e-03, - 2DIAGNOSTIC, 46, -8.880058271119e-01, 6.926114801486e-05, 2.3147e-01, 3.4990e-03, - 2DIAGNOSTIC, 47, -8.884742187489e-01, 7.123268214470e-05, 2.3419e-01, 2.7158e-03, - 2DIAGNOSTIC, 48, -8.889494305622e-01, 7.226790912465e-05, 2.3794e-01, 3.7489e-03, - 2DIAGNOSTIC, 49, -8.890311227474e-01, 7.230669251114e-05, 2.4072e-01, 2.7862e-03, - 2DIAGNOSTIC, 50, -8.891929008391e-01, 6.899286028911e-05, 2.4315e-01, 2.4240e-03, - 2DIAGNOSTIC, 51, -8.892532121037e-01, 6.036939954169e-05, 2.4584e-01, 2.6948e-03, - 2DIAGNOSTIC, 52, -8.893049074068e-01, 4.986322613548e-05, 2.4824e-01, 2.3971e-03, - 2DIAGNOSTIC, 53, -8.893206252881e-01, 3.591258779522e-05, 2.5126e-01, 3.0150e-03, - 2DIAGNOSTIC, 54, -8.893763541845e-01, 2.437476919071e-05, 2.5396e-01, 2.7089e-03, - 2DIAGNOSTIC, 55, -8.893996087941e-01, 1.587582348513e-05, 2.5674e-01, 2.7750e-03, - 2DIAGNOSTIC, 56, -8.893571890331e-01, 9.808682843605e-06, 2.5954e-01, 2.8009e-03, - 2DIAGNOSTIC, 57, -8.893322688630e-01, 5.555089609331e-06, 2.6194e-01, 2.4049e-03, - 2DIAGNOSTIC, 58, -8.893096477033e-01, 3.514576154003e-06, 2.6438e-01, 2.4350e-03, - 2DIAGNOSTIC, 59, -8.893550950699e-01, 1.936732367935e-06, 2.6679e-01, 2.4071e-03, - 2DIAGNOSTIC, 60, -8.894367875537e-01, 1.581283525755e-06, 2.6921e-01, 2.4219e-03, - 2DIAGNOSTIC, 61, -8.894612242778e-01, 1.579623343607e-06, 2.7235e-01, 3.1462e-03, - 2DIAGNOSTIC, 62, -8.894958057500e-01, 1.941529136823e-06, 2.7552e-01, 3.1650e-03, - 2DIAGNOSTIC, 63, -8.894696896096e-01, 2.095986332610e-06, 2.7830e-01, 2.7812e-03, - 2DIAGNOSTIC, 64, -8.894716721516e-01, 2.381083761417e-06, 2.8076e-01, 2.4550e-03, - 2DIAGNOSTIC, 65, -8.894802857508e-01, 2.631431030513e-06, 2.8317e-01, 2.4111e-03, - 2DIAGNOSTIC, 66, -8.894856580244e-01, 2.484703213460e-06, 2.8560e-01, 2.4350e-03, - 2DIAGNOSTIC, 67, -8.894908010997e-01, 2.063795312437e-06, 2.8802e-01, 2.4199e-03, - 2DIAGNOSTIC, 68, -8.894975450331e-01, 1.429406620471e-06, 2.9081e-01, 2.7909e-03, - 2DIAGNOSTIC, 69, -8.895305894205e-01, 1.083882851666e-06, 2.9582e-01, 5.0068e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.462751037982e-01, 1.797693134862e+308, 3.6128e-01, 6.5462e-02, - 2DIAGNOSTIC, 2, -6.467460433182e-01, 1.797693134862e+308, 3.7293e-01, 1.1647e-02, - 2DIAGNOSTIC, 3, -6.474818011337e-01, 1.797693134862e+308, 3.8477e-01, 1.1839e-02, - 2DIAGNOSTIC, 4, -6.489129019728e-01, 1.797693134862e+308, 3.9749e-01, 1.2725e-02, - 2DIAGNOSTIC, 5, -6.506970756948e-01, 1.797693134862e+308, 4.1108e-01, 1.3591e-02, - 2DIAGNOSTIC, 6, -6.521528183530e-01, 1.797693134862e+308, 4.2458e-01, 1.3494e-02, - 2DIAGNOSTIC, 7, -6.528298379453e-01, 1.797693134862e+308, 4.4367e-01, 1.9094e-02, - 2DIAGNOSTIC, 8, -6.528622330718e-01, 1.797693134862e+308, 4.5540e-01, 1.1731e-02, - 2DIAGNOSTIC, 9, -6.529859067787e-01, 1.797693134862e+308, 4.6737e-01, 1.1971e-02, - 2DIAGNOSTIC, 10, -6.530931001024e-01, 7.948069843522e-04, 4.7959e-01, 1.2218e-02, - 2DIAGNOSTIC, 11, -6.531998217869e-01, 6.119694655699e-04, 4.9168e-01, 1.2089e-02, - 2DIAGNOSTIC, 12, -6.533392871366e-01, 4.276334841158e-04, 5.0382e-01, 1.2136e-02, - 2DIAGNOSTIC, 13, -6.534731536428e-01, 2.625823605612e-04, 5.1598e-01, 1.2160e-02, - 2DIAGNOSTIC, 14, -6.536284709441e-01, 1.462208064244e-04, 5.3702e-01, 2.1043e-02, - 2DIAGNOSTIC, 15, -6.536711455718e-01, 8.436908648138e-05, 5.4895e-01, 1.1932e-02, - 2DIAGNOSTIC, 16, -6.536890577211e-01, 6.244805098864e-05, 5.6163e-01, 1.2673e-02, - 2DIAGNOSTIC, 17, -6.537596851771e-01, 5.676967186713e-05, 5.7599e-01, 1.4363e-02, - 2DIAGNOSTIC, 18, -6.538344232705e-01, 4.912790553589e-05, 5.9195e-01, 1.5962e-02, - 2DIAGNOSTIC, 19, -6.538455788724e-01, 4.091199140397e-05, 6.0399e-01, 1.2040e-02, - 2DIAGNOSTIC, 20, -6.539259213755e-01, 3.398722046883e-05, 6.1598e-01, 1.1987e-02, - 2DIAGNOSTIC, 21, -6.539892284374e-01, 2.820352969886e-05, 6.3111e-01, 1.5138e-02, - 2DIAGNOSTIC, 22, -6.540176680149e-01, 2.371288598118e-05, 6.4463e-01, 1.3511e-02, - 2DIAGNOSTIC, 23, -6.540794018600e-01, 2.116144882394e-05, 6.5784e-01, 1.3210e-02, - 2DIAGNOSTIC, 24, -6.541231248687e-01, 2.056428179018e-05, 6.6983e-01, 1.1994e-02, - 2DIAGNOSTIC, 25, -6.541669823822e-01, 1.971454812816e-05, 6.8186e-01, 1.2028e-02, - 2DIAGNOSTIC, 26, -6.542730897586e-01, 1.923790531275e-05, 6.9833e-01, 1.6476e-02, - 2DIAGNOSTIC, 27, -6.543284286891e-01, 1.907659504698e-05, 7.1030e-01, 1.1963e-02, - 2DIAGNOSTIC, 28, -6.543481596500e-01, 1.872042702918e-05, 7.2612e-01, 1.5818e-02, - 2DIAGNOSTIC, 29, -6.543683512777e-01, 1.719355076240e-05, 7.4333e-01, 1.7214e-02, - 2DIAGNOSTIC, 30, -6.543801714525e-01, 1.556715826492e-05, 7.5505e-01, 1.1720e-02, - 2DIAGNOSTIC, 31, -6.544542452824e-01, 1.458422277709e-05, 7.6730e-01, 1.2252e-02, - 2DIAGNOSTIC, 32, -6.545398769552e-01, 1.388148456031e-05, 7.8002e-01, 1.2722e-02, - 2DIAGNOSTIC, 33, -6.545943159346e-01, 1.351887202615e-05, 7.9294e-01, 1.2918e-02, - 2DIAGNOSTIC, 34, -6.546125644453e-01, 1.279402921321e-05, 8.0791e-01, 1.4971e-02, - 2DIAGNOSTIC, 35, -6.546373476730e-01, 1.182433135118e-05, 8.2494e-01, 1.7030e-02, - 2DIAGNOSTIC, 36, -6.546401787599e-01, 1.116077307161e-05, 8.3702e-01, 1.2074e-02, - 2DIAGNOSTIC, 37, -6.546768548331e-01, 1.061939309128e-05, 8.5109e-01, 1.4070e-02, - 2DIAGNOSTIC, 38, -6.546822231218e-01, 9.451571531788e-06, 8.6361e-01, 1.2525e-02, - 2DIAGNOSTIC, 39, -6.546899861096e-01, 7.853609000758e-06, 8.7642e-01, 1.2811e-02, - 2DIAGNOSTIC, 40, -6.547116819026e-01, 6.026444639609e-06, 8.9093e-01, 1.4504e-02, - 2DIAGNOSTIC, 41, -6.547208646832e-01, 4.649501770270e-06, 9.1037e-01, 1.9440e-02, - 2DIAGNOSTIC, 42, -6.547222705366e-01, 3.854992963220e-06, 9.2334e-01, 1.2973e-02, - 2DIAGNOSTIC, 43, -6.547324830964e-01, 3.455682699403e-06, 9.3851e-01, 1.5172e-02, - 2DIAGNOSTIC, 44, -6.547370216004e-01, 3.036066489763e-06, 9.5167e-01, 1.3154e-02, - 2DIAGNOSTIC, 45, -6.547391962863e-01, 2.674984306991e-06, 9.6558e-01, 1.3916e-02, - 2DIAGNOSTIC, 46, -6.547435828647e-01, 2.200782135593e-06, 9.7828e-01, 1.2703e-02, - 2DIAGNOSTIC, 47, -6.547515045552e-01, 2.016747137450e-06, 9.9044e-01, 1.2151e-02, - 2DIAGNOSTIC, 48, -6.547609669111e-01, 1.845262902367e-06, 1.0042e+00, 1.3766e-02, - 2DIAGNOSTIC, 49, -6.547669542725e-01, 1.683300091246e-06, 1.0201e+00, 1.5876e-02, - 2DIAGNOSTIC, 50, -6.547710248795e-01, 1.652251130815e-06, 1.0339e+00, 1.3853e-02, - 2DIAGNOSTIC, 51, -6.547722464683e-01, 1.615141523650e-06, 1.0462e+00, 1.2291e-02, - 2DIAGNOSTIC, 52, -6.547829236782e-01, 1.583193778416e-06, 1.0586e+00, 1.2380e-02, - 2DIAGNOSTIC, 53, -6.547895225131e-01, 1.593417182331e-06, 1.0710e+00, 1.2446e-02, - 2DIAGNOSTIC, 54, -6.547946461665e-01, 1.585233777579e-06, 1.0859e+00, 1.4808e-02, - 2DIAGNOSTIC, 55, -6.547968913043e-01, 1.517795181424e-06, 1.0989e+00, 1.2998e-02, - 2DIAGNOSTIC, 56, -6.548002106497e-01, 1.422554624122e-06, 1.1119e+00, 1.3073e-02, - 2DIAGNOSTIC, 57, -6.548082445927e-01, 1.367852373681e-06, 1.1252e+00, 1.3308e-02, - 2DIAGNOSTIC, 58, -6.548192284945e-01, 1.387355542039e-06, 1.1389e+00, 1.3642e-02, - 2DIAGNOSTIC, 59, -6.548346884947e-01, 1.482104196104e-06, 1.1543e+00, 1.5388e-02, - 2DIAGNOSTIC, 60, -6.548347640106e-01, 1.512781604939e-06, 1.1784e+00, 2.4144e-02, - 2DIAGNOSTIC, 61, -6.548347653837e-01, 1.457608740492e-06, 1.2023e+00, 2.3898e-02, - 2DIAGNOSTIC, 62, -6.548347653838e-01, 1.388885661445e-06, 1.2248e+00, 2.2509e-02, - 2DIAGNOSTIC, 63, -6.548347653838e-01, 1.281320963151e-06, 1.2397e+00, 1.4859e-02, - 2DIAGNOSTIC, 64, -6.548347653838e-01, 1.135917692279e-06, 1.2531e+00, 1.3436e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.278111853495e-01, 1.797693134862e+308, 1.4768e+00, 2.2370e-01, - Elapsed time (stage 1): 1.5017e+00 - - -Total elapsed time: 2.6009e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:40:32 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 55 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 57 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 92.01% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 92.01% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[10987 1621 2730 1378 28234 16277 2239 10303 870 824 1525 442 - 11097 2324 2001 2947 2053 14911 0 969 7191 12540 2657 3654 - 4616 2157 10179 1395 8288 1414 1075 1555 1510 0 646 590 - 787 0 347 287 0 196 1321 0 0 0 0 0 - 0 0 239 0 201 0 223] -[90096 27655 39842 27261 25403 22630 28170 14989 15378 17461 18984 14907 - 14244 12021 14653 9331 13960 10476 17664 8680 7684 7707 7945 9598 - 7749 2672 3093 1733 2704 2635 1736 1953 2305 1990 1567 1009 - 1256 1117 1761 756 1154 1149 1730 1000 802 1207 588 757 - 947 706 1320 718 819 532 0] -[ 0 0 6078 0 616 0 0 0 0 297 0 6581 - 19599 794 482 0 6933 24370 20828 1028 0 0 5007 0 - 0 3382 0 274 12642 315 35743 15431 598 208 482 0 - 11680 2888 0 0 195 0 0 0 21855 947 0 307 - 291 13439 0 528 0 0 491] -[ 1667 4566 1277 1039 1824 955 1318 2277 1960 903 1556 349 - 4296 571 7442 3343 63419 302 685 14749 14918 1854 7724 5913 - 2682 24313 2982 4060 1352 15422 3594 2757 22196 1460 7747 1507 - 2350 64455 2313 2080 1605 3876 2243 8464 1065 19445 616 18823 - 2213 1052 1125 12316 1185 210 11241] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:52:34 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:52:40 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:29 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:29 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:29 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:41 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:56:44 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC005 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:57:05 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:57:31 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:59:23 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 14:59:24 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:00:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:00:45 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55b1fe859d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.2528, 107.058, -151.485] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55b1fe6d0730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f57a1264010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55b1fe85d020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 55.5723, -120.229] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55b1fe8630c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f579dba5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55b1fe873840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.2528, 107.058, -151.485] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55b1fe85f890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5798ed1010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55b1fe8773e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 55.5723, -120.229] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55b1fe866130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5795812010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.251470906541e-01, 1.797693134862e+308, 2.3557e-01, 2.3557e-01, - 2DIAGNOSTIC, 2, -4.262268914083e-01, 1.797693134862e+308, 2.3692e-01, 1.3499e-03, - 2DIAGNOSTIC, 3, -4.295102620993e-01, 1.797693134862e+308, 2.3825e-01, 1.3249e-03, - 2DIAGNOSTIC, 4, -4.340250002722e-01, 1.797693134862e+308, 2.3963e-01, 1.3888e-03, - 2DIAGNOSTIC, 5, -4.553713859877e-01, 1.797693134862e+308, 2.4117e-01, 1.5368e-03, - 2DIAGNOSTIC, 6, -4.594513287290e-01, 1.797693134862e+308, 2.4266e-01, 1.4861e-03, - 2DIAGNOSTIC, 7, -4.598431074433e-01, 1.797693134862e+308, 2.4496e-01, 2.3050e-03, - 2DIAGNOSTIC, 8, -4.636616207509e-01, 1.797693134862e+308, 2.4632e-01, 1.3621e-03, - 2DIAGNOSTIC, 9, -4.633703731535e-01, 1.797693134862e+308, 2.4787e-01, 1.5430e-03, - 2DIAGNOSTIC, 10, -4.636716051503e-01, 6.833859706320e-03, 2.4938e-01, 1.5161e-03, - 2DIAGNOSTIC, 11, -4.642429910453e-01, 5.314063359064e-03, 2.5085e-01, 1.4641e-03, - 2DIAGNOSTIC, 12, -4.632852850602e-01, 3.600681898655e-03, 2.5244e-01, 1.5941e-03, - 2DIAGNOSTIC, 13, -4.815814304917e-01, 2.877342014399e-03, 2.5394e-01, 1.5020e-03, - 2DIAGNOSTIC, 14, -5.505905847684e-01, 5.178365152861e-03, 2.5572e-01, 1.7781e-03, - 2DIAGNOSTIC, 15, -5.921176151364e-01, 9.078524235141e-03, 2.5724e-01, 1.5159e-03, - 2DIAGNOSTIC, 16, -6.302501481385e-01, 1.306092617654e-02, 2.5897e-01, 1.7271e-03, - 2DIAGNOSTIC, 17, -6.379314410686e-01, 1.553276466993e-02, 2.6089e-01, 1.9281e-03, - 2DIAGNOSTIC, 18, -6.368403969799e-01, 1.634165075294e-02, 2.6311e-01, 2.2130e-03, - 2DIAGNOSTIC, 19, -6.420828347206e-01, 1.566975898265e-02, 2.6534e-01, 2.2359e-03, - 2DIAGNOSTIC, 20, -6.428385529306e-01, 1.365018145800e-02, 2.6720e-01, 1.8601e-03, - 2DIAGNOSTIC, 21, -6.487309117748e-01, 1.079168868374e-02, 2.6934e-01, 2.1360e-03, - 2DIAGNOSTIC, 22, -6.494969454131e-01, 7.269807063276e-03, 2.7129e-01, 1.9491e-03, - 2DIAGNOSTIC, 23, -6.465946590243e-01, 3.792004923329e-03, 2.7332e-01, 2.0320e-03, - 2DIAGNOSTIC, 24, -6.473861323449e-01, 1.850065820036e-03, 2.7502e-01, 1.7009e-03, - 2DIAGNOSTIC, 25, -6.469898626423e-01, 7.675798382551e-04, 2.7673e-01, 1.7071e-03, - 2DIAGNOSTIC, 26, -6.470344119701e-01, 4.763285747971e-04, 2.7893e-01, 2.2061e-03, - 2DIAGNOSTIC, 27, -6.483241749937e-01, 3.406986389846e-04, 2.8147e-01, 2.5389e-03, - 2DIAGNOSTIC, 28, -6.483653489429e-01, 1.644951362012e-04, 2.8314e-01, 1.6720e-03, - 2DIAGNOSTIC, 29, -6.463004064111e-01, 4.481800642950e-05, 2.8507e-01, 1.9300e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.322576508738e-01, 1.797693134862e+308, 5.3025e-01, 2.4517e-01, - 2DIAGNOSTIC, 2, -5.318313848077e-01, 1.797693134862e+308, 5.3286e-01, 2.6081e-03, - 2DIAGNOSTIC, 3, -5.338811055868e-01, 1.797693134862e+308, 5.3550e-01, 2.6481e-03, - 2DIAGNOSTIC, 4, -5.385469864101e-01, 1.797693134862e+308, 5.3789e-01, 2.3880e-03, - 2DIAGNOSTIC, 5, -5.434698328851e-01, 1.797693134862e+308, 5.4039e-01, 2.4991e-03, - 2DIAGNOSTIC, 6, -5.441769726863e-01, 1.797693134862e+308, 5.4250e-01, 2.1069e-03, - 2DIAGNOSTIC, 7, -5.475189933731e-01, 1.797693134862e+308, 5.4510e-01, 2.6031e-03, - 2DIAGNOSTIC, 8, -5.497626519228e-01, 1.797693134862e+308, 5.4778e-01, 2.6841e-03, - 2DIAGNOSTIC, 9, -5.489297542831e-01, 1.797693134862e+308, 5.5003e-01, 2.2440e-03, - 2DIAGNOSTIC, 10, -5.494447254273e-01, 2.498268438766e-03, 5.5251e-01, 2.4829e-03, - 2DIAGNOSTIC, 11, -5.507689897493e-01, 2.064716831604e-03, 5.5478e-01, 2.2700e-03, - 2DIAGNOSTIC, 12, -5.505192525655e-01, 1.488829229484e-03, 5.5725e-01, 2.4681e-03, - 2DIAGNOSTIC, 13, -5.655514814455e-01, 1.548601985274e-03, 5.5993e-01, 2.6820e-03, - 2DIAGNOSTIC, 14, -5.758538236175e-01, 1.994674308410e-03, 5.6294e-01, 3.0119e-03, - 2DIAGNOSTIC, 15, -5.793485307872e-01, 2.483992704999e-03, 5.6567e-01, 2.7261e-03, - 2DIAGNOSTIC, 16, -5.827753751325e-01, 2.819582914957e-03, 5.6837e-01, 2.7041e-03, - 2DIAGNOSTIC, 17, -5.857734105018e-01, 3.045295411448e-03, 5.7066e-01, 2.2829e-03, - 2DIAGNOSTIC, 18, -6.154470218136e-01, 3.853847664804e-03, 5.7294e-01, 2.2829e-03, - 2DIAGNOSTIC, 19, -6.653812100416e-01, 5.472769707827e-03, 5.7527e-01, 2.3348e-03, - 2DIAGNOSTIC, 20, -7.104530099535e-01, 7.486070900751e-03, 5.7960e-01, 4.3290e-03, - 2DIAGNOSTIC, 21, -7.153278658491e-01, 8.717656133869e-03, 5.8185e-01, 2.2440e-03, - 2DIAGNOSTIC, 22, -7.339797774759e-01, 9.418323085826e-03, 5.8409e-01, 2.2390e-03, - 2DIAGNOSTIC, 23, -7.454139910516e-01, 9.704150714642e-03, 5.8632e-01, 2.2349e-03, - 2DIAGNOSTIC, 24, -7.481854428098e-01, 9.294913531987e-03, 5.8867e-01, 2.3439e-03, - 2DIAGNOSTIC, 25, -7.813297090072e-01, 8.729610367978e-03, 5.9128e-01, 2.6178e-03, - 2DIAGNOSTIC, 26, -7.871360245155e-01, 7.570886599063e-03, 5.9416e-01, 2.8789e-03, - 2DIAGNOSTIC, 27, -7.907850224007e-01, 5.934327485585e-03, 5.9649e-01, 2.3260e-03, - 2DIAGNOSTIC, 28, -8.056136936644e-01, 4.601313086597e-03, 5.9939e-01, 2.9049e-03, - 2DIAGNOSTIC, 29, -8.235809915230e-01, 3.982999569765e-03, 6.0167e-01, 2.2779e-03, - 2DIAGNOSTIC, 30, -8.339459530449e-01, 3.856675384768e-03, 6.0432e-01, 2.6450e-03, - 2DIAGNOSTIC, 31, -8.660222577701e-01, 3.892249104781e-03, 6.0716e-01, 2.8450e-03, - 2DIAGNOSTIC, 32, -8.982876762515e-01, 4.240583933713e-03, 6.0937e-01, 2.2080e-03, - 2DIAGNOSTIC, 33, -9.703439171286e-01, 5.228656611176e-03, 6.1248e-01, 3.1130e-03, - 2DIAGNOSTIC, 34, -9.937165264361e-01, 5.932640361686e-03, 6.1489e-01, 2.4130e-03, - 2DIAGNOSTIC, 35, -1.020233380110e+00, 6.730054309202e-03, 6.1696e-01, 2.0680e-03, - 2DIAGNOSTIC, 36, -1.022752734095e+00, 6.929305409386e-03, 6.1912e-01, 2.1570e-03, - 2DIAGNOSTIC, 37, -1.026882093942e+00, 6.542194351408e-03, 6.2156e-01, 2.4400e-03, - 2DIAGNOSTIC, 38, -1.029143279474e+00, 5.738564253248e-03, 6.2464e-01, 3.0799e-03, - 2DIAGNOSTIC, 39, -1.028791809657e+00, 4.630835106561e-03, 6.2691e-01, 2.2709e-03, - 2DIAGNOSTIC, 40, -1.033453018622e+00, 3.313209286507e-03, 6.2970e-01, 2.7878e-03, - 2DIAGNOSTIC, 41, -1.035533375604e+00, 2.096347908143e-03, 6.3312e-01, 3.4211e-03, - 2DIAGNOSTIC, 42, -1.035852786186e+00, 1.046594168573e-03, 6.3543e-01, 2.3091e-03, - 2DIAGNOSTIC, 43, -1.035901543770e+00, 6.002377809894e-04, 6.3755e-01, 2.1169e-03, - 2DIAGNOSTIC, 44, -1.036252389961e+00, 3.225010759254e-04, 6.3967e-01, 2.1219e-03, - 2DIAGNOSTIC, 45, -1.036509192949e+00, 2.527156424127e-04, 6.4179e-01, 2.1272e-03, - 2DIAGNOSTIC, 46, -1.037584062424e+00, 1.908507354284e-04, 6.4406e-01, 2.2700e-03, - 2DIAGNOSTIC, 47, -1.042742068360e+00, 1.869166937572e-04, 6.4622e-01, 2.1520e-03, - 2DIAGNOSTIC, 48, -1.045377010238e+00, 2.024926678861e-04, 6.5010e-01, 3.8810e-03, - 2DIAGNOSTIC, 49, -1.046191113278e+00, 2.006706619988e-04, 6.5252e-01, 2.4240e-03, - 2DIAGNOSTIC, 50, -1.046254724560e+00, 2.141543934176e-04, 6.5462e-01, 2.0959e-03, - 2DIAGNOSTIC, 51, -1.046288431453e+00, 2.215173450629e-04, 6.5795e-01, 3.3350e-03, - 2DIAGNOSTIC, 52, -1.046293458077e+00, 2.091318576712e-04, 6.6009e-01, 2.1369e-03, - 2DIAGNOSTIC, 53, -1.046312539314e+00, 1.775628494074e-04, 6.6219e-01, 2.1021e-03, - 2DIAGNOSTIC, 54, -1.046059436130e+00, 1.316969792839e-04, 6.6436e-01, 2.1710e-03, - 2DIAGNOSTIC, 55, -1.046074189567e+00, 7.769180629921e-05, 6.6700e-01, 2.6379e-03, - 2DIAGNOSTIC, 56, -1.045838103241e+00, 2.335165120698e-05, 6.7015e-01, 3.1459e-03, - 2DIAGNOSTIC, 57, -1.046084317517e+00, 1.734789399372e-06, 6.7271e-01, 2.5620e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.669278924073e-01, 1.797693134862e+308, 9.2902e-01, 2.5631e-01, - 2DIAGNOSTIC, 2, -8.714183578335e-01, 1.797693134862e+308, 9.4249e-01, 1.3475e-02, - 2DIAGNOSTIC, 3, -8.755661991561e-01, 1.797693134862e+308, 9.5625e-01, 1.3763e-02, - 2DIAGNOSTIC, 4, -8.781783239989e-01, 1.797693134862e+308, 9.6979e-01, 1.3533e-02, - 2DIAGNOSTIC, 5, -8.794329014803e-01, 1.797693134862e+308, 9.8321e-01, 1.3427e-02, - 2DIAGNOSTIC, 6, -8.800954214655e-01, 1.797693134862e+308, 9.9653e-01, 1.3317e-02, - 2DIAGNOSTIC, 7, -8.819221687998e-01, 1.797693134862e+308, 1.0161e+00, 1.9586e-02, - 2DIAGNOSTIC, 8, -8.823947097320e-01, 1.797693134862e+308, 1.0324e+00, 1.6269e-02, - 2DIAGNOSTIC, 9, -8.827876156281e-01, 1.797693134862e+308, 1.0455e+00, 1.3091e-02, - 2DIAGNOSTIC, 10, -8.830550042127e-01, 1.061825997965e-03, 1.0578e+00, 1.2333e-02, - 2DIAGNOSTIC, 11, -8.839413243090e-01, 7.081786845970e-04, 1.0759e+00, 1.8055e-02, - 2DIAGNOSTIC, 12, -8.845511252374e-01, 4.847886797219e-04, 1.0906e+00, 1.4717e-02, - 2DIAGNOSTIC, 13, -8.845689264983e-01, 3.543016221974e-04, 1.1037e+00, 1.3157e-02, - 2DIAGNOSTIC, 14, -8.846640127177e-01, 2.733778806446e-04, 1.1190e+00, 1.5290e-02, - 2DIAGNOSTIC, 15, -8.846867181996e-01, 2.062397693164e-04, 1.1359e+00, 1.6836e-02, - 2DIAGNOSTIC, 16, -8.848203379289e-01, 1.437158627521e-04, 1.1505e+00, 1.4641e-02, - 2DIAGNOSTIC, 17, -8.854308460083e-01, 1.214107449392e-04, 1.1653e+00, 1.4818e-02, - 2DIAGNOSTIC, 18, -8.854610732853e-01, 9.935103105634e-05, 1.1782e+00, 1.2920e-02, - 2DIAGNOSTIC, 19, -8.854434856654e-01, 7.729208638774e-05, 1.1932e+00, 1.4940e-02, - 2DIAGNOSTIC, 20, -8.854900502061e-01, 5.535294893806e-05, 1.2079e+00, 1.4710e-02, - 2DIAGNOSTIC, 21, -8.855376539219e-01, 4.451165649601e-05, 1.2264e+00, 1.8555e-02, - 2DIAGNOSTIC, 22, -8.856291241710e-01, 4.075815911647e-05, 1.2402e+00, 1.3756e-02, - 2DIAGNOSTIC, 23, -8.856596598757e-01, 3.427234551018e-05, 1.2532e+00, 1.2989e-02, - 2DIAGNOSTIC, 24, -8.856647546363e-01, 2.675199150198e-05, 1.2696e+00, 1.6436e-02, - 2DIAGNOSTIC, 25, -8.856683485137e-01, 1.784990862738e-05, 1.2837e+00, 1.4077e-02, - 2DIAGNOSTIC, 26, -8.856447474873e-01, 9.212716511275e-06, 1.2978e+00, 1.4123e-02, - 2DIAGNOSTIC, 27, -8.856459438386e-01, 7.744804670584e-06, 1.3102e+00, 1.2397e-02, - 2DIAGNOSTIC, 28, -8.856480905288e-01, 6.143541680874e-06, 1.3233e+00, 1.3086e-02, - 2DIAGNOSTIC, 29, -8.856786230942e-01, 4.325183584883e-06, 1.3376e+00, 1.4337e-02, - 2DIAGNOSTIC, 30, -8.857374322589e-01, 3.447925245606e-06, 1.3638e+00, 2.6186e-02, - 2DIAGNOSTIC, 31, -8.857374736704e-01, 2.864574120784e-06, 1.3769e+00, 1.3023e-02, - 2DIAGNOSTIC, 32, -8.857387573347e-01, 3.081886034248e-06, 1.3898e+00, 1.2924e-02, - 2DIAGNOSTIC, 33, -8.857398819359e-01, 3.399718076322e-06, 1.4028e+00, 1.2979e-02, - 2DIAGNOSTIC, 34, -8.857403924837e-01, 3.510204621408e-06, 1.4216e+00, 1.8877e-02, - 2DIAGNOSTIC, 35, -8.857404010394e-01, 3.399792415364e-06, 1.4389e+00, 1.7213e-02, - 2DIAGNOSTIC, 36, -8.857404017427e-01, 2.850553714431e-06, 1.4525e+00, 1.3666e-02, - 2DIAGNOSTIC, 37, -8.857404018732e-01, 2.165377253765e-06, 1.4678e+00, 1.5277e-02, - 2DIAGNOSTIC, 38, -8.857404019608e-01, 1.408775950094e-06, 1.4835e+00, 1.5732e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.500037867482e-01, 1.797693134862e+308, 1.9086e+00, 4.2512e-01, - 2DIAGNOSTIC, 2, -7.505476531620e-01, 1.797693134862e+308, 1.9906e+00, 8.1966e-02, - 2DIAGNOSTIC, 3, -7.506471257711e-01, 1.797693134862e+308, 2.0751e+00, 8.4441e-02, - 2DIAGNOSTIC, 4, -7.508676114573e-01, 1.797693134862e+308, 2.1580e+00, 8.2914e-02, - 2DIAGNOSTIC, 5, -7.509865378041e-01, 1.797693134862e+308, 2.2773e+00, 1.1932e-01, - 2DIAGNOSTIC, 6, -7.510432240412e-01, 1.797693134862e+308, 2.3772e+00, 9.9923e-02, - 2DIAGNOSTIC, 7, -7.510946322448e-01, 1.797693134862e+308, 2.4891e+00, 1.1193e-01, - 2DIAGNOSTIC, 8, -7.512032304396e-01, 1.797693134862e+308, 2.5742e+00, 8.5038e-02, - 2DIAGNOSTIC, 9, -7.512351679640e-01, 1.797693134862e+308, 2.6604e+00, 8.6206e-02, - 2DIAGNOSTIC, 10, -7.513818455303e-01, 9.721721777085e-05, 2.7772e+00, 1.1677e-01, - 2DIAGNOSTIC, 11, -7.514182145940e-01, 6.757991830594e-05, 2.8664e+00, 8.9291e-02, - 2DIAGNOSTIC, 12, -7.514550770452e-01, 5.544707803949e-05, 2.9711e+00, 1.0461e-01, - 2DIAGNOSTIC, 13, -7.514929817276e-01, 4.428784941661e-05, 3.0942e+00, 1.2312e-01, - 2DIAGNOSTIC, 14, -7.514888416757e-01, 3.667849959176e-05, 3.2017e+00, 1.0756e-01, - 2DIAGNOSTIC, 15, -7.515707919113e-01, 3.199056946958e-05, 3.3084e+00, 1.0664e-01, - 2DIAGNOSTIC, 16, -7.517108305638e-01, 2.973747054798e-05, 3.4409e+00, 1.3254e-01, - 2DIAGNOSTIC, 17, -7.517185376046e-01, 2.641466129817e-05, 3.5448e+00, 1.0392e-01, - 2DIAGNOSTIC, 18, -7.517160345057e-01, 2.349744378458e-05, 3.6346e+00, 8.9747e-02, - 2DIAGNOSTIC, 19, -7.517145761689e-01, 1.945897551305e-05, 3.7408e+00, 1.0621e-01, - 2DIAGNOSTIC, 20, -7.517122015183e-01, 1.686886872203e-05, 3.8281e+00, 8.7274e-02, - 2DIAGNOSTIC, 21, -7.517098201362e-01, 1.365422589970e-05, 3.9499e+00, 1.2181e-01, - 2DIAGNOSTIC, 22, -7.517098227701e-01, 1.022512679059e-05, 4.0462e+00, 9.6350e-02, - 2DIAGNOSTIC, 23, -7.517098334127e-01, 6.951633678413e-06, 4.1536e+00, 1.0736e-01, - 2DIAGNOSTIC, 24, -7.517098397445e-01, 3.355611530510e-06, 4.2592e+00, 1.0566e-01, - Elapsed time (stage 0): 4.4096e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -1.132121759183e+00, 1.797693134862e+308, 2.3094e-01, 2.3094e-01, - 2DIAGNOSTIC, 2, -1.135244291332e+00, 1.797693134862e+308, 2.3254e-01, 1.6000e-03, - 2DIAGNOSTIC, 3, -1.141301376856e+00, 1.797693134862e+308, 2.3411e-01, 1.5750e-03, - 2DIAGNOSTIC, 4, -1.148922879337e+00, 1.797693134862e+308, 2.3569e-01, 1.5762e-03, - 2DIAGNOSTIC, 5, -1.159087640681e+00, 1.797693134862e+308, 2.3719e-01, 1.5049e-03, - 2DIAGNOSTIC, 6, -1.170042716439e+00, 1.797693134862e+308, 2.3897e-01, 1.7800e-03, - 2DIAGNOSTIC, 7, -1.174888291074e+00, 1.797693134862e+308, 2.4078e-01, 1.8089e-03, - 2DIAGNOSTIC, 8, -1.178365259689e+00, 1.797693134862e+308, 2.4321e-01, 2.4290e-03, - 2DIAGNOSTIC, 9, -1.178338166028e+00, 1.797693134862e+308, 2.4514e-01, 1.9262e-03, - 2DIAGNOSTIC, 10, -1.176915887175e+00, 3.003246823042e-03, 2.4716e-01, 2.0292e-03, - 2DIAGNOSTIC, 11, -1.176191805554e+00, 2.284210717971e-03, 2.4997e-01, 2.8050e-03, - 2DIAGNOSTIC, 12, -1.175395510439e+00, 1.528613093096e-03, 2.5305e-01, 3.0799e-03, - 2DIAGNOSTIC, 13, -1.175415906628e+00, 8.669774588436e-04, 2.5501e-01, 1.9569e-03, - 2DIAGNOSTIC, 14, -1.175501314695e+00, 3.548007306858e-04, 2.5687e-01, 1.8601e-03, - 2DIAGNOSTIC, 15, -1.174600854045e+00, 2.701784679188e-05, 2.5876e-01, 1.8921e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -1.071734838063e+00, 1.797693134862e+308, 4.8173e-01, 2.2297e-01, - 2DIAGNOSTIC, 2, -1.071237462028e+00, 1.797693134862e+308, 4.8433e-01, 2.6069e-03, - 2DIAGNOSTIC, 3, -1.071044000081e+00, 1.797693134862e+308, 4.8646e-01, 2.1219e-03, - 2DIAGNOSTIC, 4, -1.071017613015e+00, 1.797693134862e+308, 4.8827e-01, 1.8120e-03, - 2DIAGNOSTIC, 5, -1.071138545864e+00, 1.797693134862e+308, 4.9026e-01, 1.9891e-03, - 2DIAGNOSTIC, 6, -1.071737794320e+00, 1.797693134862e+308, 4.9225e-01, 1.9960e-03, - 2DIAGNOSTIC, 7, -1.072876851079e+00, 1.797693134862e+308, 4.9426e-01, 2.0092e-03, - 2DIAGNOSTIC, 8, -1.074773726147e+00, 1.797693134862e+308, 4.9619e-01, 1.9271e-03, - 2DIAGNOSTIC, 9, -1.076225847947e+00, 1.797693134862e+308, 4.9812e-01, 1.9310e-03, - 2DIAGNOSTIC, 10, -1.078036008079e+00, 3.804912695752e-04, 5.0033e-01, 2.2130e-03, - 2DIAGNOSTIC, 11, -1.079647764905e+00, 4.856719652178e-04, 5.0251e-01, 2.1820e-03, - 2DIAGNOSTIC, 12, -1.081097100745e+00, 5.504073744639e-04, 5.0497e-01, 2.4559e-03, - 2DIAGNOSTIC, 13, -1.081293896485e+00, 5.552991404122e-04, 5.0744e-01, 2.4719e-03, - 2DIAGNOSTIC, 14, -1.080798975832e+00, 4.998859056622e-04, 5.1020e-01, 2.7552e-03, - 2DIAGNOSTIC, 15, -1.080817987899e+00, 4.093999690763e-04, 5.1237e-01, 2.1701e-03, - 2DIAGNOSTIC, 16, -1.080847485003e+00, 3.028443818284e-04, 5.1461e-01, 2.2440e-03, - 2DIAGNOSTIC, 17, -1.081941682337e+00, 2.151348408270e-04, 5.1714e-01, 2.5251e-03, - 2DIAGNOSTIC, 18, -1.082661659870e+00, 1.554428282012e-04, 5.2027e-01, 3.1290e-03, - 2DIAGNOSTIC, 19, -1.082687608731e+00, 1.082477676580e-04, 5.2247e-01, 2.2070e-03, - 2DIAGNOSTIC, 20, -1.082438965250e+00, 7.651853488765e-05, 5.2492e-01, 2.4519e-03, - 2DIAGNOSTIC, 21, -1.082459832294e+00, 6.094258759137e-05, 5.2709e-01, 2.1689e-03, - 2DIAGNOSTIC, 22, -1.082216728406e+00, 5.527387228328e-05, 5.2959e-01, 2.4979e-03, - 2DIAGNOSTIC, 23, -1.082229309831e+00, 4.748515375139e-05, 5.3208e-01, 2.4900e-03, - 2DIAGNOSTIC, 24, -1.081453214672e+00, 2.220425507128e-05, 5.3489e-01, 2.8119e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.080022801072e-01, 1.797693134862e+308, 7.7585e-01, 2.4096e-01, - 2DIAGNOSTIC, 2, -9.105532644902e-01, 1.797693134862e+308, 7.9011e-01, 1.4254e-02, - 2DIAGNOSTIC, 3, -9.128941075981e-01, 1.797693134862e+308, 8.0400e-01, 1.3893e-02, - 2DIAGNOSTIC, 4, -9.140190535579e-01, 1.797693134862e+308, 8.1803e-01, 1.4025e-02, - 2DIAGNOSTIC, 5, -9.153925934956e-01, 1.797693134862e+308, 8.3216e-01, 1.4134e-02, - 2DIAGNOSTIC, 6, -9.165984111464e-01, 1.797693134862e+308, 8.4949e-01, 1.7329e-02, - 2DIAGNOSTIC, 7, -9.183422429870e-01, 1.797693134862e+308, 8.7059e-01, 2.1104e-02, - 2DIAGNOSTIC, 8, -9.187239915967e-01, 1.797693134862e+308, 8.8386e-01, 1.3268e-02, - 2DIAGNOSTIC, 9, -9.190805811350e-01, 1.797693134862e+308, 8.9684e-01, 1.2980e-02, - 2DIAGNOSTIC, 10, -9.193504755244e-01, 7.828243210159e-04, 9.1182e-01, 1.4975e-02, - 2DIAGNOSTIC, 11, -9.193903432577e-01, 5.636952134233e-04, 9.2673e-01, 1.4913e-02, - 2DIAGNOSTIC, 12, -9.194793601717e-01, 3.977004731095e-04, 9.4005e-01, 1.3317e-02, - 2DIAGNOSTIC, 13, -9.195019522953e-01, 2.778757234513e-04, 9.5545e-01, 1.5405e-02, - 2DIAGNOSTIC, 14, -9.196238760770e-01, 1.777483409185e-04, 9.7041e-01, 1.4964e-02, - 2DIAGNOSTIC, 15, -9.197051308203e-01, 1.047537590284e-04, 9.8350e-01, 1.3084e-02, - 2DIAGNOSTIC, 16, -9.202194845306e-01, 6.400903699876e-05, 9.9965e-01, 1.6149e-02, - 2DIAGNOSTIC, 17, -9.205385804256e-01, 5.968308366582e-05, 1.0155e+00, 1.5860e-02, - 2DIAGNOSTIC, 18, -9.207739400166e-01, 6.096459594409e-05, 1.0313e+00, 1.5793e-02, - 2DIAGNOSTIC, 19, -9.210703121007e-01, 6.722565287585e-05, 1.0509e+00, 1.9641e-02, - 2DIAGNOSTIC, 20, -9.210354389074e-01, 7.034755999535e-05, 1.0670e+00, 1.6086e-02, - 2DIAGNOSTIC, 21, -9.210574078425e-01, 6.764864858691e-05, 1.0849e+00, 1.7890e-02, - 2DIAGNOSTIC, 22, -9.210698600325e-01, 6.041838102745e-05, 1.0986e+00, 1.3693e-02, - 2DIAGNOSTIC, 23, -9.211086287088e-01, 4.911373717521e-05, 1.1140e+00, 1.5421e-02, - 2DIAGNOSTIC, 24, -9.210759768798e-01, 3.546726423000e-05, 1.1296e+00, 1.5542e-02, - 2DIAGNOSTIC, 25, -9.210630769026e-01, 2.048147637022e-05, 1.1426e+00, 1.3047e-02, - 2DIAGNOSTIC, 26, -9.210965437538e-01, 1.135147861849e-05, 1.1556e+00, 1.2980e-02, - 2DIAGNOSTIC, 27, -9.211004563342e-01, 5.580704527094e-06, 1.1711e+00, 1.5481e-02, - 2DIAGNOSTIC, 28, -9.211039454966e-01, 2.347224486561e-06, 1.1908e+00, 1.9708e-02, - 2DIAGNOSTIC, 29, -9.210775431270e-01, 2.128737810948e-06, 1.2067e+00, 1.5946e-02, - 2DIAGNOSTIC, 30, -9.210775706548e-01, 1.480936879454e-06, 1.2206e+00, 1.3860e-02, - 2DIAGNOSTIC, 31, -9.210775912834e-01, 1.042735420689e-06, 1.2329e+00, 1.2300e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.707442239669e-01, 1.797693134862e+308, 1.6612e+00, 4.2831e-01, - 2DIAGNOSTIC, 2, -7.713455499819e-01, 1.797693134862e+308, 1.7464e+00, 8.5190e-02, - 2DIAGNOSTIC, 3, -7.718183878303e-01, 1.797693134862e+308, 1.8342e+00, 8.7759e-02, - 2DIAGNOSTIC, 4, -7.723582746875e-01, 1.797693134862e+308, 1.9916e+00, 1.5741e-01, - 2DIAGNOSTIC, 5, -7.724250739856e-01, 1.797693134862e+308, 2.0953e+00, 1.0373e-01, - 2DIAGNOSTIC, 6, -7.724330933106e-01, 1.797693134862e+308, 2.1837e+00, 8.8374e-02, - 2DIAGNOSTIC, 7, -7.724336005211e-01, 1.797693134862e+308, 2.2714e+00, 8.7779e-02, - 2DIAGNOSTIC, 8, -7.724370009213e-01, 1.797693134862e+308, 2.3731e+00, 1.0167e-01, - 2DIAGNOSTIC, 9, -7.724348256376e-01, 1.797693134862e+308, 2.4880e+00, 1.1492e-01, - 2DIAGNOSTIC, 10, -7.724337782978e-01, 1.177364138660e-04, 2.5930e+00, 1.0494e-01, - 2DIAGNOSTIC, 11, -7.724227551684e-01, 5.891547831630e-05, 2.6937e+00, 1.0075e-01, - 2DIAGNOSTIC, 12, -7.724128112185e-01, 2.284202798619e-05, 2.7946e+00, 1.0084e-01, - 2DIAGNOSTIC, 13, -7.724063252175e-01, 3.291553583501e-06, 2.8992e+00, 1.0464e-01, - Elapsed time (stage 1): 3.0382e+00 - - -Total elapsed time: 7.4513e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:00:55 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:00:56 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5572e7b784f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 55.5723, -120.229] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5572e7b7dfa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbd9eb32010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5572e7b79850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 55.5723, -120.229] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5572e7b76f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbd9b473010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5572e7b90b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 55.5723, -120.229] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5572e7b7d550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbd97db4010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5572e7b95d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 55.5723, -120.229] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5572e7b93c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbd946f5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x5572e7b97f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 55.5723, -120.229] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5572e7b963a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbd91036010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5572e7b98540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 55.5723, -120.229] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5572e7b984d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbd8d977010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.218361131240e-01, 1.797693134862e+308, 2.1821e-01, 2.1821e-01, - 2DIAGNOSTIC, 2, -8.239791064921e-01, 1.797693134862e+308, 2.2025e-01, 2.0421e-03, - 2DIAGNOSTIC, 3, -8.259671661999e-01, 1.797693134862e+308, 2.2264e-01, 2.3880e-03, - 2DIAGNOSTIC, 4, -8.270539377508e-01, 1.797693134862e+308, 2.2461e-01, 1.9648e-03, - 2DIAGNOSTIC, 5, -8.272315386080e-01, 1.797693134862e+308, 2.2667e-01, 2.0649e-03, - 2DIAGNOSTIC, 6, -8.275665645407e-01, 1.797693134862e+308, 2.2872e-01, 2.0468e-03, - 2DIAGNOSTIC, 7, -8.286337043683e-01, 1.797693134862e+308, 2.3094e-01, 2.2259e-03, - 2DIAGNOSTIC, 8, -8.288289615293e-01, 1.797693134862e+308, 2.3341e-01, 2.4691e-03, - 2DIAGNOSTIC, 9, -8.291168848545e-01, 1.797693134862e+308, 2.3565e-01, 2.2371e-03, - 2DIAGNOSTIC, 10, -8.300076520342e-01, 5.345402507717e-04, 2.3812e-01, 2.4672e-03, - 2DIAGNOSTIC, 11, -8.305319011794e-01, 3.917911204352e-04, 2.4063e-01, 2.5182e-03, - 2DIAGNOSTIC, 12, -8.305336128002e-01, 2.977021517222e-04, 2.4313e-01, 2.4941e-03, - 2DIAGNOSTIC, 13, -8.305494195560e-01, 2.441281872941e-04, 2.4564e-01, 2.5110e-03, - 2DIAGNOSTIC, 14, -8.305612722944e-01, 2.036004935537e-04, 2.4849e-01, 2.8510e-03, - 2DIAGNOSTIC, 15, -8.305661164111e-01, 1.540210901733e-04, 2.5143e-01, 2.9390e-03, - 2DIAGNOSTIC, 16, -8.305662107203e-01, 1.031545237291e-04, 2.5383e-01, 2.4049e-03, - 2DIAGNOSTIC, 17, -8.305663295724e-01, 7.072627581386e-05, 2.5610e-01, 2.2640e-03, - 2DIAGNOSTIC, 18, -8.305669891015e-01, 3.948918880770e-05, 2.5837e-01, 2.2669e-03, - 2DIAGNOSTIC, 19, -8.305690345815e-01, 1.293514731558e-05, 2.6055e-01, 2.1889e-03, - 2DIAGNOSTIC, 20, -8.305727461388e-01, 3.077055328461e-06, 2.6335e-01, 2.7959e-03, - 2DIAGNOSTIC, 21, -8.305734264096e-01, 2.596604311879e-06, 2.6555e-01, 2.1968e-03, - 2DIAGNOSTIC, 22, -8.305736933468e-01, 2.087269328759e-06, 2.6777e-01, 2.2180e-03, - 2DIAGNOSTIC, 23, -8.305747067715e-01, 1.809730465083e-06, 2.7494e-01, 7.1709e-03, - 2DIAGNOSTIC, 24, -8.305747067215e-01, 1.682026647930e-06, 2.8197e-01, 7.0350e-03, - 2DIAGNOSTIC, 25, -8.305747067215e-01, 1.597071262932e-06, 2.8442e-01, 2.4459e-03, - 2DIAGNOSTIC, 26, -8.305747067214e-01, 1.489945360846e-06, 2.8689e-01, 2.4750e-03, - 2DIAGNOSTIC, 27, -8.305747067214e-01, 1.368070638656e-06, 2.8984e-01, 2.9469e-03, - 2DIAGNOSTIC, 28, -8.305747067214e-01, 1.244995198060e-06, 2.9225e-01, 2.4090e-03, - 2DIAGNOSTIC, 29, -8.305747067214e-01, 1.143315388134e-06, 2.9523e-01, 2.9781e-03, - 2DIAGNOSTIC, 30, -8.305747067214e-01, 1.086586845625e-06, 2.9779e-01, 2.5671e-03, - 2DIAGNOSTIC, 31, -8.305747067214e-01, 1.038751833209e-06, 3.0088e-01, 3.0849e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.209980955691e-01, 1.797693134862e+308, 5.3896e-01, 2.3809e-01, - 2DIAGNOSTIC, 2, -7.217548498480e-01, 1.797693134862e+308, 5.5327e-01, 1.4304e-02, - 2DIAGNOSTIC, 3, -7.222104975025e-01, 1.797693134862e+308, 5.6679e-01, 1.3521e-02, - 2DIAGNOSTIC, 4, -7.227515289833e-01, 1.797693134862e+308, 5.8057e-01, 1.3785e-02, - 2DIAGNOSTIC, 5, -7.238944008449e-01, 1.797693134862e+308, 5.9622e-01, 1.5644e-02, - 2DIAGNOSTIC, 6, -7.255120500149e-01, 1.797693134862e+308, 6.1917e-01, 2.2955e-02, - 2DIAGNOSTIC, 7, -7.255184721769e-01, 1.797693134862e+308, 6.3841e-01, 1.9242e-02, - 2DIAGNOSTIC, 8, -7.255314263771e-01, 1.797693134862e+308, 6.5198e-01, 1.3565e-02, - 2DIAGNOSTIC, 9, -7.255086669566e-01, 1.797693134862e+308, 6.6754e-01, 1.5565e-02, - 2DIAGNOSTIC, 10, -7.254982449319e-01, 4.613552355362e-04, 6.8332e-01, 1.5779e-02, - 2DIAGNOSTIC, 11, -7.254894069950e-01, 3.350353660563e-04, 6.9901e-01, 1.5686e-02, - 2DIAGNOSTIC, 12, -7.254592526944e-01, 2.239787272746e-04, 7.1492e-01, 1.5910e-02, - 2DIAGNOSTIC, 13, -7.254478652891e-01, 1.242220881371e-04, 7.3090e-01, 1.5981e-02, - 2DIAGNOSTIC, 14, -7.254343985241e-01, 4.210070545185e-05, 7.4516e-01, 1.4260e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.067302514597e-01, 1.797693134862e+308, 1.1705e+00, 4.2530e-01, - 2DIAGNOSTIC, 2, -6.072779115856e-01, 1.797693134862e+308, 1.2728e+00, 1.0239e-01, - 2DIAGNOSTIC, 3, -6.074179177377e-01, 1.797693134862e+308, 1.3688e+00, 9.5983e-02, - 2DIAGNOSTIC, 4, -6.075333258259e-01, 1.797693134862e+308, 1.4684e+00, 9.9558e-02, - 2DIAGNOSTIC, 5, -6.076715717380e-01, 1.797693134862e+308, 1.5648e+00, 9.6449e-02, - 2DIAGNOSTIC, 6, -6.077784416080e-01, 1.797693134862e+308, 1.7420e+00, 1.7720e-01, - 2DIAGNOSTIC, 7, -6.077958487295e-01, 1.797693134862e+308, 1.9031e+00, 1.6107e-01, - 2DIAGNOSTIC, 8, -6.077977513498e-01, 1.797693134862e+308, 2.0097e+00, 1.0662e-01, - 2DIAGNOSTIC, 9, -6.077971761745e-01, 1.797693134862e+308, 2.1210e+00, 1.1130e-01, - 2DIAGNOSTIC, 10, -6.077970275909e-01, 9.333898522583e-05, 2.2154e+00, 9.4355e-02, - 2DIAGNOSTIC, 11, -6.077970976575e-01, 4.955982414509e-05, 2.3089e+00, 9.3549e-02, - 2DIAGNOSTIC, 12, -6.077964787489e-01, 3.017672226020e-05, 2.4156e+00, 1.0671e-01, - 2DIAGNOSTIC, 13, -6.077970176383e-01, 1.634897922718e-05, 2.5092e+00, 9.3581e-02, - 2DIAGNOSTIC, 14, -6.077987584166e-01, 7.067943251796e-06, 2.6165e+00, 1.0727e-01, - 2DIAGNOSTIC, 15, -6.077990325735e-01, 2.816676424267e-06, 2.7245e+00, 1.0799e-01, - 2DIAGNOSTIC, 16, -6.077956608252e-01, 2.045191513145e-06, 2.8194e+00, 9.4900e-02, - 2DIAGNOSTIC, 17, -6.077950740209e-01, 1.824042599928e-06, 2.9279e+00, 1.0852e-01, - 2DIAGNOSTIC, 18, -6.077941642683e-01, 1.657226719007e-06, 3.0265e+00, 9.8620e-02, - 2DIAGNOSTIC, 19, -6.077928249418e-01, 1.469268640676e-06, 3.1214e+00, 9.4845e-02, - 2DIAGNOSTIC, 20, -6.077966985299e-01, 1.406725272407e-06, 3.2290e+00, 1.0765e-01, - 2DIAGNOSTIC, 21, -6.077944693974e-01, 1.318513504996e-06, 3.3381e+00, 1.0903e-01, - 2DIAGNOSTIC, 22, -6.077937598846e-01, 1.231079902915e-06, 3.4456e+00, 1.0756e-01, - 2DIAGNOSTIC, 23, -6.077969160084e-01, 1.246049361303e-06, 3.5406e+00, 9.5019e-02, - 2DIAGNOSTIC, 24, -6.077984114453e-01, 1.332153601034e-06, 3.6464e+00, 1.0577e-01, - 2DIAGNOSTIC, 25, -6.078030632872e-01, 1.503026603400e-06, 3.7527e+00, 1.0633e-01, - 2DIAGNOSTIC, 26, -6.078057697106e-01, 1.626142490413e-06, 3.8450e+00, 9.2229e-02, - 2DIAGNOSTIC, 27, -6.078050742217e-01, 1.681480688909e-06, 3.9517e+00, 1.0677e-01, - 2DIAGNOSTIC, 28, -6.078067111430e-01, 1.699570717675e-06, 4.0598e+00, 1.0810e-01, - 2DIAGNOSTIC, 29, -6.078137285840e-01, 1.751302826480e-06, 4.1811e+00, 1.2128e-01, - 2DIAGNOSTIC, 30, -6.078132049982e-01, 1.787146095417e-06, 4.2904e+00, 1.0925e-01, - 2DIAGNOSTIC, 31, -6.078115230076e-01, 1.695129437915e-06, 4.3971e+00, 1.0671e-01, - 2DIAGNOSTIC, 32, -6.078109249463e-01, 1.528640727382e-06, 4.5170e+00, 1.1992e-01, - 2DIAGNOSTIC, 33, -6.078097919814e-01, 1.350141839683e-06, 4.6224e+00, 1.0540e-01, - 2DIAGNOSTIC, 34, -6.078084361677e-01, 1.144154566847e-06, 4.7157e+00, 9.3338e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.230536092100e-01, 1.797693134862e+308, 6.0947e+00, 1.3790e+00, - 2DIAGNOSTIC, 2, -5.230806881025e-01, 1.797693134862e+308, 6.6581e+00, 5.6338e-01, - 2DIAGNOSTIC, 3, -5.231186777142e-01, 1.797693134862e+308, 7.2263e+00, 5.6818e-01, - 2DIAGNOSTIC, 4, -5.231816749030e-01, 1.797693134862e+308, 7.8616e+00, 6.3536e-01, - 2DIAGNOSTIC, 5, -5.231876460804e-01, 1.797693134862e+308, 8.4874e+00, 6.2581e-01, - 2DIAGNOSTIC, 6, -5.231993961495e-01, 1.797693134862e+308, 9.1410e+00, 6.5351e-01, - 2DIAGNOSTIC, 7, -5.232154420924e-01, 1.797693134862e+308, 9.7241e+00, 5.8314e-01, - 2DIAGNOSTIC, 8, -5.232307892803e-01, 1.797693134862e+308, 1.0753e+01, 1.0291e+00, - 2DIAGNOSTIC, 9, -5.232285331307e-01, 1.797693134862e+308, 1.1718e+01, 9.6522e-01, - 2DIAGNOSTIC, 10, -5.232286134715e-01, 2.494278210184e-05, 1.2372e+01, 6.5377e-01, - 2DIAGNOSTIC, 11, -5.232285078967e-01, 1.768515371496e-05, 1.3017e+01, 6.4512e-01, - 2DIAGNOSTIC, 12, -5.232283795340e-01, 1.150200418300e-05, 1.3642e+01, 6.2498e-01, - 2DIAGNOSTIC, 13, -5.232280890782e-01, 6.969057878253e-06, 1.4280e+01, 6.3751e-01, - 2DIAGNOSTIC, 14, -5.232279533127e-01, 5.120583248308e-06, 1.4925e+01, 6.4571e-01, - 2DIAGNOSTIC, 15, -5.232278002072e-01, 3.473340594223e-06, 1.5513e+01, 5.8764e-01, - 2DIAGNOSTIC, 16, -5.232274834843e-01, 2.285574926139e-06, 1.6063e+01, 5.5029e-01, - 2DIAGNOSTIC, 17, -5.232275661523e-01, 1.710943107525e-06, 1.6688e+01, 6.2471e-01, - 2DIAGNOSTIC, 18, -5.232274751165e-01, 1.677234701673e-06, 1.7336e+01, 6.4832e-01, - 2DIAGNOSTIC, 19, -5.232268443377e-01, 1.572791582034e-06, 1.7992e+01, 6.5568e-01, - 2DIAGNOSTIC, 20, -5.232265652511e-01, 1.483352646603e-06, 1.8635e+01, 6.4270e-01, - 2DIAGNOSTIC, 21, -5.232257489312e-01, 1.388638843955e-06, 1.9194e+01, 5.5950e-01, - 2DIAGNOSTIC, 22, -5.232253589818e-01, 1.301867346863e-06, 1.9902e+01, 7.0723e-01, - 2DIAGNOSTIC, 23, -5.232254348659e-01, 1.230991450649e-06, 2.0542e+01, 6.4024e-01, - 2DIAGNOSTIC, 24, -5.232247469735e-01, 1.161498034342e-06, 2.1168e+01, 6.2607e-01, - 2DIAGNOSTIC, 25, -5.232244130584e-01, 1.103096094211e-06, 2.1783e+01, 6.1520e-01, - 2DIAGNOSTIC, 26, -5.232239084450e-01, 1.048060170768e-06, 2.2360e+01, 5.7664e-01, - 2DIAGNOSTIC, 27, -5.232236183026e-01, 1.009432593881e-06, 2.2990e+01, 6.3006e-01, - Elapsed time (stage 0): 2.3368e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.491930307249e-01, 1.797693134862e+308, 1.8276e-01, 1.8276e-01, - 2DIAGNOSTIC, 2, -8.512019760454e-01, 1.797693134862e+308, 1.8475e-01, 1.9908e-03, - 2DIAGNOSTIC, 3, -8.539618105546e-01, 1.797693134862e+308, 1.8663e-01, 1.8828e-03, - 2DIAGNOSTIC, 4, -8.572563474586e-01, 1.797693134862e+308, 1.8850e-01, 1.8661e-03, - 2DIAGNOSTIC, 5, -8.605084034229e-01, 1.797693134862e+308, 1.9035e-01, 1.8449e-03, - 2DIAGNOSTIC, 6, -8.636069604104e-01, 1.797693134862e+308, 1.9259e-01, 2.2440e-03, - 2DIAGNOSTIC, 7, -8.662348513951e-01, 1.797693134862e+308, 1.9489e-01, 2.3010e-03, - 2DIAGNOSTIC, 8, -8.665031296861e-01, 1.797693134862e+308, 1.9905e-01, 4.1640e-03, - 2DIAGNOSTIC, 9, -8.665109366935e-01, 1.797693134862e+308, 2.0131e-01, 2.2540e-03, - 2DIAGNOSTIC, 10, -8.665697406252e-01, 1.465601779447e-03, 2.0368e-01, 2.3739e-03, - 2DIAGNOSTIC, 11, -8.666460410005e-01, 1.089198533287e-03, 2.0598e-01, 2.3022e-03, - 2DIAGNOSTIC, 12, -8.667231939971e-01, 7.347110998670e-04, 2.0832e-01, 2.3348e-03, - 2DIAGNOSTIC, 13, -8.667955087656e-01, 4.403760082549e-04, 2.1141e-01, 3.0930e-03, - 2DIAGNOSTIC, 14, -8.668754347756e-01, 2.276921386565e-04, 2.1441e-01, 3.0010e-03, - 2DIAGNOSTIC, 15, -8.669802233735e-01, 9.550513702655e-05, 2.1748e-01, 3.0639e-03, - 2DIAGNOSTIC, 16, -8.671567570559e-01, 3.726456679103e-05, 2.2130e-01, 3.8228e-03, - 2DIAGNOSTIC, 17, -8.671729102480e-01, 3.367583332656e-05, 2.2468e-01, 3.3760e-03, - 2DIAGNOSTIC, 18, -8.671838928557e-01, 3.271970559982e-05, 2.2821e-01, 3.5379e-03, - 2DIAGNOSTIC, 19, -8.671925079668e-01, 2.930374028080e-05, 2.3051e-01, 2.2960e-03, - 2DIAGNOSTIC, 20, -8.672180367324e-01, 2.500846536315e-05, 2.3299e-01, 2.4750e-03, - 2DIAGNOSTIC, 21, -8.672237014637e-01, 2.016632552800e-05, 2.3512e-01, 2.1319e-03, - 2DIAGNOSTIC, 22, -8.672276563580e-01, 1.523695064683e-05, 2.3729e-01, 2.1770e-03, - 2DIAGNOSTIC, 23, -8.672356719990e-01, 1.062481151454e-05, 2.3949e-01, 2.1980e-03, - 2DIAGNOSTIC, 24, -8.672593542784e-01, 6.938908310820e-06, 2.4165e-01, 2.1598e-03, - 2DIAGNOSTIC, 25, -8.672991932147e-01, 4.849724822752e-06, 2.4427e-01, 2.6228e-03, - 2DIAGNOSTIC, 26, -8.673191903834e-01, 5.056849492403e-06, 2.4926e-01, 4.9870e-03, - 2DIAGNOSTIC, 27, -8.673192007917e-01, 5.089375496536e-06, 2.5141e-01, 2.1460e-03, - 2DIAGNOSTIC, 28, -8.673194936654e-01, 4.892859492060e-06, 2.5354e-01, 2.1350e-03, - 2DIAGNOSTIC, 29, -8.673199359739e-01, 4.448398123899e-06, 2.5567e-01, 2.1319e-03, - 2DIAGNOSTIC, 30, -8.673205725878e-01, 3.994643315235e-06, 2.5779e-01, 2.1160e-03, - 2DIAGNOSTIC, 31, -8.673213227035e-01, 3.359466894323e-06, 2.5993e-01, 2.1381e-03, - 2DIAGNOSTIC, 32, -8.673220658117e-01, 2.597915851332e-06, 2.6236e-01, 2.4350e-03, - 2DIAGNOSTIC, 33, -8.673225089004e-01, 1.816181989460e-06, 2.6499e-01, 2.6309e-03, - 2DIAGNOSTIC, 34, -8.673225542433e-01, 1.220423940212e-06, 2.6745e-01, 2.4540e-03, - 2DIAGNOSTIC, 35, -8.673225751719e-01, 1.000745991624e-06, 2.6991e-01, 2.4629e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.132547480804e-01, 1.797693134862e+308, 4.8193e-01, 2.1202e-01, - 2DIAGNOSTIC, 2, -7.148896565154e-01, 1.797693134862e+308, 4.9601e-01, 1.4072e-02, - 2DIAGNOSTIC, 3, -7.166985843040e-01, 1.797693134862e+308, 5.1071e-01, 1.4705e-02, - 2DIAGNOSTIC, 4, -7.185046278361e-01, 1.797693134862e+308, 5.2455e-01, 1.3844e-02, - 2DIAGNOSTIC, 5, -7.200278871467e-01, 1.797693134862e+308, 5.4050e-01, 1.5948e-02, - 2DIAGNOSTIC, 6, -7.211631521305e-01, 1.797693134862e+308, 5.6787e-01, 2.7365e-02, - 2DIAGNOSTIC, 7, -7.211688346936e-01, 1.797693134862e+308, 5.8240e-01, 1.4537e-02, - 2DIAGNOSTIC, 8, -7.211923505795e-01, 1.797693134862e+308, 5.9712e-01, 1.4712e-02, - 2DIAGNOSTIC, 9, -7.212294171930e-01, 1.797693134862e+308, 6.1179e-01, 1.4671e-02, - 2DIAGNOSTIC, 10, -7.212845960119e-01, 7.208749102343e-04, 6.2679e-01, 1.5007e-02, - 2DIAGNOSTIC, 11, -7.213469866990e-01, 4.671214702543e-04, 6.4205e-01, 1.5252e-02, - 2DIAGNOSTIC, 12, -7.214530949486e-01, 2.711472160435e-04, 6.5663e-01, 1.4579e-02, - 2DIAGNOSTIC, 13, -7.215810395911e-01, 1.395050022059e-04, 6.7327e-01, 1.6649e-02, - 2DIAGNOSTIC, 14, -7.217909927038e-01, 7.023144825624e-05, 6.9876e-01, 2.5485e-02, - 2DIAGNOSTIC, 15, -7.217959987789e-01, 4.329286512135e-05, 7.1571e-01, 1.6955e-02, - 2DIAGNOSTIC, 16, -7.218059897664e-01, 4.429972553718e-05, 7.3028e-01, 1.4570e-02, - 2DIAGNOSTIC, 17, -7.218149492377e-01, 4.166519361812e-05, 7.4775e-01, 1.7469e-02, - 2DIAGNOSTIC, 18, -7.218254173078e-01, 3.633282400332e-05, 7.6194e-01, 1.4185e-02, - 2DIAGNOSTIC, 19, -7.218244325170e-01, 2.904422274599e-05, 7.7589e-01, 1.3955e-02, - 2DIAGNOSTIC, 20, -7.218477778676e-01, 2.151139135780e-05, 7.8968e-01, 1.3790e-02, - 2DIAGNOSTIC, 21, -7.218787982232e-01, 1.461939252425e-05, 8.0371e-01, 1.4028e-02, - 2DIAGNOSTIC, 22, -7.219164896566e-01, 9.676233896867e-06, 8.1768e-01, 1.3969e-02, - 2DIAGNOSTIC, 23, -7.219538156841e-01, 7.119811600814e-06, 8.3314e-01, 1.5463e-02, - 2DIAGNOSTIC, 24, -7.219866274939e-01, 8.227312991153e-06, 8.4781e-01, 1.4667e-02, - 2DIAGNOSTIC, 25, -7.220016092383e-01, 8.907385007702e-06, 8.6443e-01, 1.6619e-02, - 2DIAGNOSTIC, 26, -7.219983177809e-01, 8.913921420307e-06, 8.8669e-01, 2.2265e-02, - 2DIAGNOSTIC, 27, -7.220370281456e-01, 8.891786473515e-06, 9.0220e-01, 1.5507e-02, - 2DIAGNOSTIC, 28, -7.220394092161e-01, 8.311030087950e-06, 9.1697e-01, 1.4768e-02, - 2DIAGNOSTIC, 29, -7.220430650970e-01, 7.128133125679e-06, 9.3172e-01, 1.4755e-02, - 2DIAGNOSTIC, 30, -7.220614739957e-01, 6.007654001196e-06, 9.5541e-01, 2.3686e-02, - 2DIAGNOSTIC, 31, -7.220621369621e-01, 4.885651395586e-06, 9.7039e-01, 1.4983e-02, - 2DIAGNOSTIC, 32, -7.220631972962e-01, 3.935648372894e-06, 9.8545e-01, 1.5061e-02, - 2DIAGNOSTIC, 33, -7.220647253511e-01, 3.219784957258e-06, 1.0000e+00, 1.4595e-02, - 2DIAGNOSTIC, 34, -7.220675153012e-01, 2.744840787165e-06, 1.0153e+00, 1.5267e-02, - 2DIAGNOSTIC, 35, -7.220694914138e-01, 2.318850297566e-06, 1.0323e+00, 1.6941e-02, - 2DIAGNOSTIC, 36, -7.221489159366e-01, 2.604005965814e-06, 1.0627e+00, 3.0414e-02, - 2DIAGNOSTIC, 37, -7.221248968769e-01, 2.845832409708e-06, 1.0794e+00, 1.6756e-02, - 2DIAGNOSTIC, 38, -7.221156873330e-01, 2.833347513286e-06, 1.0963e+00, 1.6839e-02, - 2DIAGNOSTIC, 39, -7.221050069841e-01, 2.567515805595e-06, 1.1106e+00, 1.4325e-02, - 2DIAGNOSTIC, 40, -7.220908846744e-01, 2.185127461918e-06, 1.1256e+00, 1.5007e-02, - 2DIAGNOSTIC, 41, -7.220750202346e-01, 1.532226581578e-06, 1.1443e+00, 1.8729e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.079967719075e-01, 1.797693134862e+308, 1.5705e+00, 4.2616e-01, - 2DIAGNOSTIC, 2, -6.087006521863e-01, 1.797693134862e+308, 1.6737e+00, 1.0319e-01, - 2DIAGNOSTIC, 3, -6.089598327550e-01, 1.797693134862e+308, 1.7777e+00, 1.0403e-01, - 2DIAGNOSTIC, 4, -6.091192757585e-01, 1.797693134862e+308, 1.8960e+00, 1.1831e-01, - 2DIAGNOSTIC, 5, -6.093483662144e-01, 1.797693134862e+308, 2.0252e+00, 1.2914e-01, - 2DIAGNOSTIC, 6, -6.094083598876e-01, 1.797693134862e+308, 2.1422e+00, 1.1702e-01, - 2DIAGNOSTIC, 7, -6.094129252288e-01, 1.797693134862e+308, 2.2434e+00, 1.0118e-01, - 2DIAGNOSTIC, 8, -6.094250758908e-01, 1.797693134862e+308, 2.3446e+00, 1.0128e-01, - 2DIAGNOSTIC, 9, -6.094416471543e-01, 1.797693134862e+308, 2.4445e+00, 9.9878e-02, - 2DIAGNOSTIC, 10, -6.094605851768e-01, 1.237843455879e-04, 2.5597e+00, 1.1523e-01, - 2DIAGNOSTIC, 11, -6.094627321061e-01, 6.492242616826e-05, 2.7180e+00, 1.5828e-01, - 2DIAGNOSTIC, 12, -6.094634851557e-01, 3.764340760548e-05, 2.8355e+00, 1.1748e-01, - 2DIAGNOSTIC, 13, -6.094635158306e-01, 2.067704924440e-05, 2.9405e+00, 1.0498e-01, - 2DIAGNOSTIC, 14, -6.094636406412e-01, 9.592786560320e-06, 3.0429e+00, 1.0246e-01, - 2DIAGNOSTIC, 15, -6.094640443960e-01, 6.398537820362e-06, 3.1445e+00, 1.0159e-01, - 2DIAGNOSTIC, 16, -6.094653376092e-01, 5.003196240888e-06, 3.2467e+00, 1.0217e-01, - 2DIAGNOSTIC, 17, -6.094661835859e-01, 3.646046477103e-06, 3.6114e+00, 3.6472e-01, - 2DIAGNOSTIC, 18, -6.094661835670e-01, 2.585074646490e-06, 3.9770e+00, 3.6559e-01, - 2DIAGNOSTIC, 19, -6.094661835670e-01, 1.955195285626e-06, 4.0940e+00, 1.1694e-01, - 2DIAGNOSTIC, 20, -6.094661835670e-01, 1.802771146510e-06, 4.2112e+00, 1.1721e-01, - 2DIAGNOSTIC, 21, -6.094661835670e-01, 1.691806344156e-06, 4.3407e+00, 1.2950e-01, - 2DIAGNOSTIC, 22, -6.094661835670e-01, 1.590152300536e-06, 4.4578e+00, 1.1716e-01, - 2DIAGNOSTIC, 23, -6.094661835670e-01, 1.484889795393e-06, 4.5742e+00, 1.1634e-01, - 2DIAGNOSTIC, 24, -6.094661835670e-01, 1.381657292077e-06, 4.7038e+00, 1.2964e-01, - 2DIAGNOSTIC, 25, -6.094661835670e-01, 1.288464069799e-06, 4.8182e+00, 1.1437e-01, - 2DIAGNOSTIC, 26, -6.094661835670e-01, 1.223721008081e-06, 4.9485e+00, 1.3027e-01, - 2DIAGNOSTIC, 27, -6.094661835670e-01, 1.178388960479e-06, 5.0636e+00, 1.1519e-01, - 2DIAGNOSTIC, 28, -6.094661835670e-01, 1.136295247291e-06, 5.2071e+00, 1.4349e-01, - 2DIAGNOSTIC, 29, -6.094661835670e-01, 1.097105107747e-06, 5.3395e+00, 1.3239e-01, - 2DIAGNOSTIC, 30, -6.094661835670e-01, 1.060528130467e-06, 5.4676e+00, 1.2809e-01, - 2DIAGNOSTIC, 31, -6.094661835670e-01, 1.026311383240e-06, 5.5840e+00, 1.1638e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.223278655056e-01, 1.797693134862e+308, 6.9184e+00, 1.3344e+00, - 2DIAGNOSTIC, 2, -5.225158851705e-01, 1.797693134862e+308, 7.5986e+00, 6.8021e-01, - 2DIAGNOSTIC, 3, -5.225928320127e-01, 1.797693134862e+308, 8.2150e+00, 6.1638e-01, - 2DIAGNOSTIC, 4, -5.230413007037e-01, 1.797693134862e+308, 8.8253e+00, 6.1027e-01, - 2DIAGNOSTIC, 5, -5.247517505400e-01, 1.797693134862e+308, 1.0272e+01, 1.4465e+00, - 2DIAGNOSTIC, 6, -5.247518851573e-01, 1.797693134862e+308, 1.1426e+01, 1.1541e+00, - 2DIAGNOSTIC, 7, -5.247514770415e-01, 1.797693134862e+308, 1.2383e+01, 9.5769e-01, - 2DIAGNOSTIC, 8, -5.247513751172e-01, 1.797693134862e+308, 1.3083e+01, 6.9936e-01, - 2DIAGNOSTIC, 9, -5.247512893427e-01, 1.797693134862e+308, 1.3743e+01, 6.6012e-01, - 2DIAGNOSTIC, 10, -5.247510053098e-01, 3.661036349642e-04, 1.4337e+01, 5.9403e-01, - 2DIAGNOSTIC, 11, -5.247509689867e-01, 2.652726404259e-04, 1.4955e+01, 6.1757e-01, - 2DIAGNOSTIC, 12, -5.247508795106e-01, 1.676460487670e-04, 1.5645e+01, 6.9070e-01, - 2DIAGNOSTIC, 13, -5.247506036502e-01, 7.368426068007e-05, 1.6336e+01, 6.9030e-01, - 2DIAGNOSTIC, 14, -5.247504798665e-01, 2.156793109845e-06, 1.7089e+01, 7.5326e-01, - 2DIAGNOSTIC, 15, -5.247503184666e-01, 2.008130328648e-06, 1.7798e+01, 7.0919e-01, - 2DIAGNOSTIC, 16, -5.247501482196e-01, 1.887720971178e-06, 1.8426e+01, 6.2786e-01, - 2DIAGNOSTIC, 17, -5.247499891310e-01, 1.772858298284e-06, 1.9106e+01, 6.7995e-01, - 2DIAGNOSTIC, 18, -5.247498416995e-01, 1.672620467116e-06, 1.9766e+01, 6.6060e-01, - 2DIAGNOSTIC, 19, -5.247498806306e-01, 1.590791060553e-06, 2.0375e+01, 6.0830e-01, - 2DIAGNOSTIC, 20, -5.247497600420e-01, 1.513901250708e-06, 2.0987e+01, 6.1201e-01, - 2DIAGNOSTIC, 21, -5.247496849964e-01, 1.448793393422e-06, 2.1575e+01, 5.8790e-01, - 2DIAGNOSTIC, 22, -5.247496869559e-01, 1.393942341173e-06, 2.2165e+01, 5.9004e-01, - 2DIAGNOSTIC, 23, -5.247498187189e-01, 1.345402554503e-06, 2.2853e+01, 6.8841e-01, - 2DIAGNOSTIC, 24, -5.247497267542e-01, 1.299553277732e-06, 2.3506e+01, 6.5329e-01, - 2DIAGNOSTIC, 25, -5.247496887399e-01, 1.255715017787e-06, 2.4181e+01, 6.7474e-01, - 2DIAGNOSTIC, 26, -5.247493459717e-01, 1.206355859304e-06, 2.4882e+01, 7.0049e-01, - 2DIAGNOSTIC, 27, -5.247494857479e-01, 1.162157437895e-06, 2.5505e+01, 6.2327e-01, - 2DIAGNOSTIC, 28, -5.247493492990e-01, 1.116919183627e-06, 2.6364e+01, 8.5897e-01, - 2DIAGNOSTIC, 29, -5.247494289007e-01, 1.078958734156e-06, 2.6984e+01, 6.2022e-01, - 2DIAGNOSTIC, 30, -5.247491907138e-01, 1.038893218334e-06, 2.7695e+01, 7.1128e-01, - 2DIAGNOSTIC, 31, -5.247491033696e-01, 1.000850623364e-06, 2.8278e+01, 5.8227e-01, - Elapsed time (stage 1): 2.8653e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.401444742595e-01, 1.797693134862e+308, 2.5799e-01, 2.5799e-01, - 1DIAGNOSTIC, 2, -9.491940817942e-01, 1.797693134862e+308, 3.5505e-01, 9.7060e-02, - 1DIAGNOSTIC, 3, -9.551560981318e-01, 1.797693134862e+308, 4.5714e-01, 1.0208e-01, - 1DIAGNOSTIC, 4, -9.587396511495e-01, 1.797693134862e+308, 5.5015e-01, 9.3008e-02, - 1DIAGNOSTIC, 5, -9.608576600486e-01, 1.797693134862e+308, 6.5066e-01, 1.0052e-01, - 1DIAGNOSTIC, 6, -9.626334696871e-01, 1.797693134862e+308, 7.5131e-01, 1.0065e-01, - 1DIAGNOSTIC, 7, -9.639714442437e-01, 1.797693134862e+308, 8.5442e-01, 1.0310e-01, - 1DIAGNOSTIC, 8, -9.649484128384e-01, 1.797693134862e+308, 9.5566e-01, 1.0125e-01, - 1DIAGNOSTIC, 9, -9.657256391662e-01, 1.797693134862e+308, 1.0546e+00, 9.8953e-02, - 1DIAGNOSTIC, 10, -9.657763068132e-01, 1.476091627228e-03, 1.1554e+00, 1.0075e-01, - 1DIAGNOSTIC, 11, -9.662873383172e-01, 9.025664905154e-04, 1.2523e+00, 9.6928e-02, - 1DIAGNOSTIC, 12, -9.660326890995e-01, 5.584920105079e-04, 1.3491e+00, 9.6758e-02, - 1DIAGNOSTIC, 13, -9.665506845588e-01, 3.636597961155e-04, 1.4476e+00, 9.8546e-02, - 1DIAGNOSTIC, 14, -9.662947444934e-01, 2.334087267890e-04, 1.5438e+00, 9.6153e-02, - 1DIAGNOSTIC, 15, -9.666704286522e-01, 1.483745718694e-04, 1.6391e+00, 9.5314e-02, - 1DIAGNOSTIC, 16, -9.665454800425e-01, 9.061449407935e-05, 1.7375e+00, 9.8426e-02, - 1DIAGNOSTIC, 17, -9.668682650161e-01, 6.015650195267e-05, 1.8396e+00, 1.0209e-01, - 1DIAGNOSTIC, 18, -9.668670210572e-01, 4.332239848392e-05, 1.9432e+00, 1.0361e-01, - 1DIAGNOSTIC, 19, -9.670778087239e-01, 3.982772180823e-05, 2.0396e+00, 9.6441e-02, - 1DIAGNOSTIC, 20, -9.670315261010e-01, 3.298426939724e-05, 2.1340e+00, 9.4343e-02, - 1DIAGNOSTIC, 21, -9.671817105396e-01, 3.334402006711e-05, 2.2317e+00, 9.7739e-02, - 1DIAGNOSTIC, 22, -9.671631268447e-01, 2.679105218521e-05, 2.3280e+00, 9.6241e-02, - 1DIAGNOSTIC, 23, -9.672626432594e-01, 2.648234109786e-05, 2.4233e+00, 9.5343e-02, - 1DIAGNOSTIC, 24, -9.672832408375e-01, 2.081943961397e-05, 2.5224e+00, 9.9134e-02, - 1DIAGNOSTIC, 25, -9.673422306732e-01, 1.899455661939e-05, 2.6171e+00, 9.4664e-02, - 1DIAGNOSTIC, 26, -9.673827010167e-01, 1.459615680185e-05, 2.7097e+00, 9.2559e-02, - 1DIAGNOSTIC, 27, -9.674106328135e-01, 1.310773060335e-05, 2.8038e+00, 9.4168e-02, - 1DIAGNOSTIC, 28, -9.674654104121e-01, 1.111031868562e-05, 2.9027e+00, 9.8897e-02, - 1DIAGNOSTIC, 29, -9.674917123348e-01, 1.073309950933e-05, 3.0027e+00, 1.0001e-01, - 1DIAGNOSTIC, 30, -9.675380900714e-01, 9.434287030465e-06, 3.1074e+00, 1.0462e-01, - 1DIAGNOSTIC, 31, -9.675281527868e-01, 8.769615308685e-06, 3.2040e+00, 9.6624e-02, - 1DIAGNOSTIC, 32, -9.675710229309e-01, 7.625813754138e-06, 3.2981e+00, 9.4093e-02, - 1DIAGNOSTIC, 33, -9.675685386557e-01, 6.780936508230e-06, 3.3954e+00, 9.7326e-02, - 1DIAGNOSTIC, 34, -9.676138794997e-01, 5.995428467211e-06, 3.4916e+00, 9.6175e-02, - 1DIAGNOSTIC, 35, -9.676074800911e-01, 5.205345179522e-06, 3.5855e+00, 9.3937e-02, - 1DIAGNOSTIC, 36, -9.676515977719e-01, 4.749755883233e-06, 3.6789e+00, 9.3376e-02, - 1DIAGNOSTIC, 37, -9.675975923264e-01, 3.729525872062e-06, 3.7763e+00, 9.7397e-02, - 1DIAGNOSTIC, 38, -9.676370590462e-01, 3.230803454671e-06, 3.8769e+00, 1.0066e-01, - 1DIAGNOSTIC, 39, -9.676270437242e-01, 2.633628346398e-06, 3.9750e+00, 9.8067e-02, - 1DIAGNOSTIC, 40, -9.676309565975e-01, 2.266539629512e-06, 4.0754e+00, 1.0039e-01, - 1DIAGNOSTIC, 41, -9.675779519713e-01, 1.320661902424e-06, 4.1742e+00, 9.8748e-02, - 1DIAGNOSTIC, 42, -9.675829684485e-01, 7.214302231578e-07, 4.2676e+00, 9.3470e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.234180224186e-01, 1.797693134862e+308, 5.1027e+00, 8.3509e-01, - 1DIAGNOSTIC, 2, -9.283675385086e-01, 1.797693134862e+308, 5.7725e+00, 6.6974e-01, - 1DIAGNOSTIC, 3, -9.323739557878e-01, 1.797693134862e+308, 6.4477e+00, 6.7520e-01, - 1DIAGNOSTIC, 4, -9.357392083305e-01, 1.797693134862e+308, 7.1148e+00, 6.6718e-01, - 1DIAGNOSTIC, 5, -9.386114701807e-01, 1.797693134862e+308, 7.7794e+00, 6.6459e-01, - 1DIAGNOSTIC, 6, -9.406206499420e-01, 1.797693134862e+308, 8.4394e+00, 6.5995e-01, - 1DIAGNOSTIC, 7, -9.423706519323e-01, 1.797693134862e+308, 9.0963e+00, 6.5689e-01, - 1DIAGNOSTIC, 8, -9.438160972838e-01, 1.797693134862e+308, 9.7587e+00, 6.6248e-01, - 1DIAGNOSTIC, 9, -9.449343579929e-01, 1.797693134862e+308, 1.0431e+01, 6.7203e-01, - 1DIAGNOSTIC, 10, -9.458765028993e-01, 1.470071288465e-03, 1.1104e+01, 6.7298e-01, - 1DIAGNOSTIC, 11, -9.466945052249e-01, 1.084853275342e-03, 1.1772e+01, 6.6838e-01, - 1DIAGNOSTIC, 12, -9.474094856840e-01, 8.086096458112e-04, 1.2444e+01, 6.7218e-01, - 1DIAGNOSTIC, 13, -9.479683442261e-01, 6.072742601351e-04, 1.3115e+01, 6.7030e-01, - 1DIAGNOSTIC, 14, -9.484591834888e-01, 4.621414402855e-04, 1.3790e+01, 6.7546e-01, - 1DIAGNOSTIC, 15, -9.489007725669e-01, 3.606284107262e-04, 1.4459e+01, 6.6876e-01, - 1DIAGNOSTIC, 16, -9.492927915846e-01, 2.837339892760e-04, 1.5121e+01, 6.6244e-01, - 1DIAGNOSTIC, 17, -9.496518558120e-01, 2.269649269608e-04, 1.5791e+01, 6.6980e-01, - 1DIAGNOSTIC, 18, -9.499769417502e-01, 1.850972195905e-04, 1.6470e+01, 6.7881e-01, - 1DIAGNOSTIC, 19, -9.502632186760e-01, 1.527139859788e-04, 1.7148e+01, 6.7765e-01, - 1DIAGNOSTIC, 20, -9.505285415581e-01, 1.275289674398e-04, 1.7824e+01, 6.7670e-01, - 1DIAGNOSTIC, 21, -9.507705747938e-01, 1.080315752038e-04, 1.8484e+01, 6.5962e-01, - 1DIAGNOSTIC, 22, -9.509903007432e-01, 9.302292586817e-05, 1.9146e+01, 6.6241e-01, - 1DIAGNOSTIC, 23, -9.511933595520e-01, 8.061225062921e-05, 1.9822e+01, 6.7556e-01, - 1DIAGNOSTIC, 24, -9.513756133437e-01, 7.015270946920e-05, 2.0489e+01, 6.6730e-01, - 1DIAGNOSTIC, 25, -9.515394873298e-01, 6.127254098864e-05, 2.1182e+01, 6.9269e-01, - 1DIAGNOSTIC, 26, -9.516900617203e-01, 5.363594618549e-05, 2.1884e+01, 7.0245e-01, - 1DIAGNOSTIC, 27, -9.518224788288e-01, 4.703625104893e-05, 2.2553e+01, 6.6904e-01, - 1DIAGNOSTIC, 28, -9.519533086043e-01, 4.142426158416e-05, 2.3216e+01, 6.6280e-01, - 1DIAGNOSTIC, 29, -9.520738604891e-01, 3.655933651318e-05, 2.3883e+01, 6.6685e-01, - 1DIAGNOSTIC, 30, -9.521857684030e-01, 3.239940447662e-05, 2.4558e+01, 6.7538e-01, - 1DIAGNOSTIC, 31, -9.522891642886e-01, 2.885078168563e-05, 2.5223e+01, 6.6474e-01, - 1DIAGNOSTIC, 32, -9.523863207753e-01, 2.582696254774e-05, 2.5887e+01, 6.6347e-01, - 1DIAGNOSTIC, 33, -9.524717417921e-01, 2.322436832999e-05, 2.6553e+01, 6.6598e-01, - 1DIAGNOSTIC, 34, -9.525524905140e-01, 2.095656459231e-05, 2.7226e+01, 6.7380e-01, - 1DIAGNOSTIC, 35, -9.526322267836e-01, 1.898066771085e-05, 2.7897e+01, 6.7087e-01, - 1DIAGNOSTIC, 36, -9.526991876154e-01, 1.718811598143e-05, 2.8564e+01, 6.6716e-01, - 1DIAGNOSTIC, 37, -9.527691663471e-01, 1.556325163877e-05, 2.9282e+01, 7.1755e-01, - 1DIAGNOSTIC, 38, -9.528371567456e-01, 1.417505522727e-05, 2.9955e+01, 6.7279e-01, - 1DIAGNOSTIC, 39, -9.529000686373e-01, 1.298059166072e-05, 3.0638e+01, 6.8368e-01, - 1DIAGNOSTIC, 40, -9.529600427447e-01, 1.195920535127e-05, 3.1357e+01, 7.1878e-01, - 1DIAGNOSTIC, 41, -9.530164465089e-01, 1.107729675056e-05, 3.2023e+01, 6.6594e-01, - 1DIAGNOSTIC, 42, -9.530700121537e-01, 1.031805837532e-05, 3.2685e+01, 6.6237e-01, - 1DIAGNOSTIC, 43, -9.531210337018e-01, 9.620157010715e-06, 3.3365e+01, 6.7991e-01, - 1DIAGNOSTIC, 44, -9.531683924731e-01, 8.966323725892e-06, 3.4036e+01, 6.7077e-01, - 1DIAGNOSTIC, 45, -9.532124292686e-01, 8.369451354122e-06, 3.4711e+01, 6.7496e-01, - 1DIAGNOSTIC, 46, -9.532640837480e-01, 7.829486851900e-06, 3.5411e+01, 6.9946e-01, - 1DIAGNOSTIC, 47, -9.533060748449e-01, 7.332698332984e-06, 3.6126e+01, 7.1544e-01, - 1DIAGNOSTIC, 48, -9.533463382431e-01, 6.887430665639e-06, 3.6817e+01, 6.9138e-01, - 1DIAGNOSTIC, 49, -9.533847550061e-01, 6.476961958234e-06, 3.7487e+01, 6.6985e-01, - 1DIAGNOSTIC, 50, -9.534230936165e-01, 6.106587642642e-06, 3.8162e+01, 6.7524e-01, - 1DIAGNOSTIC, 51, -9.534583149661e-01, 5.756896090236e-06, 3.8833e+01, 6.7008e-01, - 1DIAGNOSTIC, 52, -9.534931572598e-01, 5.431165020844e-06, 3.9538e+01, 7.0537e-01, - 1DIAGNOSTIC, 53, -9.535253647305e-01, 5.120676839727e-06, 4.0225e+01, 6.8661e-01, - 1DIAGNOSTIC, 54, -9.535569969924e-01, 4.821490121473e-06, 4.0922e+01, 6.9798e-01, - 1DIAGNOSTIC, 55, -9.535963658825e-01, 4.574615440692e-06, 4.1583e+01, 6.6063e-01, - 1DIAGNOSTIC, 56, -9.536253613776e-01, 4.377816165517e-06, 4.2249e+01, 6.6635e-01, - 1DIAGNOSTIC, 57, -9.536540902581e-01, 4.189602055189e-06, 4.2923e+01, 6.7370e-01, - 1DIAGNOSTIC, 58, -9.536810961186e-01, 4.002695234304e-06, 4.3596e+01, 6.7288e-01, - 1DIAGNOSTIC, 59, -9.537067235963e-01, 3.810781717274e-06, 4.4262e+01, 6.6575e-01, - 1DIAGNOSTIC, 60, -9.537319058446e-01, 3.623243406237e-06, 4.4920e+01, 6.5829e-01, - 1DIAGNOSTIC, 61, -9.537571650159e-01, 3.437269797530e-06, 4.5586e+01, 6.6601e-01, - 1DIAGNOSTIC, 62, -9.537806309595e-01, 3.255494658971e-06, 4.6256e+01, 6.7024e-01, - 1DIAGNOSTIC, 63, -9.538035034619e-01, 3.074621974745e-06, 4.6913e+01, 6.5661e-01, - 1DIAGNOSTIC, 64, -9.538247451921e-01, 2.895204441834e-06, 4.7582e+01, 6.6916e-01, - 1DIAGNOSTIC, 65, -9.538460491220e-01, 2.767036282537e-06, 4.8253e+01, 6.7128e-01, - 1DIAGNOSTIC, 66, -9.538665051759e-01, 2.644682025505e-06, 4.8921e+01, 6.6773e-01, - 1DIAGNOSTIC, 67, -9.538894944431e-01, 2.545984756585e-06, 4.9588e+01, 6.6693e-01, - 1DIAGNOSTIC, 68, -9.539089726921e-01, 2.452462960038e-06, 5.0263e+01, 6.7474e-01, - 1DIAGNOSTIC, 69, -9.539279721131e-01, 2.361800022006e-06, 5.0935e+01, 6.7193e-01, - 1DIAGNOSTIC, 70, -9.539459061936e-01, 2.272666701629e-06, 5.1594e+01, 6.5973e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.026228425730e-01, 1.797693134862e+308, 5.7260e+01, 5.6652e+00, - 1DIAGNOSTIC, 2, -9.064477133764e-01, 1.797693134862e+308, 6.2684e+01, 5.4242e+00, - 1DIAGNOSTIC, 3, -9.098354354954e-01, 1.797693134862e+308, 6.8212e+01, 5.5285e+00, - 1DIAGNOSTIC, 4, -9.128025405931e-01, 1.797693134862e+308, 7.3652e+01, 5.4402e+00, - 1DIAGNOSTIC, 5, -9.153628546513e-01, 1.797693134862e+308, 7.9101e+01, 5.4489e+00, - 1DIAGNOSTIC, 6, -9.176539040882e-01, 1.797693134862e+308, 8.4519e+01, 5.4178e+00, - 1DIAGNOSTIC, 7, -9.197583475635e-01, 1.797693134862e+308, 9.0033e+01, 5.5143e+00, - 1DIAGNOSTIC, 8, -9.217636632515e-01, 1.797693134862e+308, 9.5448e+01, 5.4149e+00, - 1DIAGNOSTIC, 9, -9.237359049473e-01, 1.797693134862e+308, 1.0088e+02, 5.4311e+00, - 1DIAGNOSTIC, 10, -9.257252259444e-01, 1.561673755442e-03, 1.0630e+02, 5.4174e+00, - 1DIAGNOSTIC, 11, -9.276901814025e-01, 1.303287456959e-03, 1.1182e+02, 5.5281e+00, - 1DIAGNOSTIC, 12, -9.293971344958e-01, 1.112727068261e-03, 1.1728e+02, 5.4584e+00, - 1DIAGNOSTIC, 13, -9.308323532510e-01, 9.649628118734e-04, 1.2275e+02, 5.4697e+00, - 1DIAGNOSTIC, 14, -9.319398925668e-01, 8.400380702357e-04, 1.2820e+02, 5.4476e+00, - 1DIAGNOSTIC, 15, -9.329087669853e-01, 7.272801912009e-04, 1.3371e+02, 5.5101e+00, - 1DIAGNOSTIC, 16, -9.336340059805e-01, 6.196655791486e-04, 1.3914e+02, 5.4285e+00, - 1DIAGNOSTIC, 17, -9.343718227792e-01, 5.189447459840e-04, 1.4460e+02, 5.4653e+00, - 1DIAGNOSTIC, 18, -9.348608567140e-01, 4.239441918705e-04, 1.5006e+02, 5.4511e+00, - 1DIAGNOSTIC, 19, -9.354063952290e-01, 3.403157871123e-04, 1.5555e+02, 5.4957e+00, - 1DIAGNOSTIC, 20, -9.357470099619e-01, 2.690182300506e-04, 1.6098e+02, 5.4297e+00, - 1DIAGNOSTIC, 21, -9.361776773003e-01, 2.143523694265e-04, 1.6644e+02, 5.4600e+00, - 1DIAGNOSTIC, 22, -9.364297141979e-01, 1.718104203398e-04, 1.7193e+02, 5.4906e+00, - 1DIAGNOSTIC, 23, -9.367921841610e-01, 1.408371201679e-04, 1.7788e+02, 5.9489e+00, - 1DIAGNOSTIC, 24, -9.369884114667e-01, 1.158274677535e-04, 1.8346e+02, 5.5808e+00, - 1DIAGNOSTIC, 25, -9.371781182617e-01, 9.617986425389e-05, 1.8902e+02, 5.5610e+00, - 1DIAGNOSTIC, 26, -9.373677451697e-01, 7.977238659224e-05, 1.9464e+02, 5.6131e+00, - 1DIAGNOSTIC, 27, -9.375659716734e-01, 6.771932904260e-05, 2.0022e+02, 5.5835e+00, - 1DIAGNOSTIC, 28, -9.377771062067e-01, 5.778509122202e-05, 2.0577e+02, 5.5544e+00, - 1DIAGNOSTIC, 29, -9.380089520058e-01, 5.133623039193e-05, 2.1137e+02, 5.5957e+00, - 1DIAGNOSTIC, 30, -9.382558456089e-01, 4.647718703737e-05, 2.1695e+02, 5.5825e+00, - 1DIAGNOSTIC, 31, -9.384930282425e-01, 4.417908175269e-05, 2.2252e+02, 5.5645e+00, - 1DIAGNOSTIC, 32, -9.387060946504e-01, 4.229098145488e-05, 2.2808e+02, 5.5618e+00, - 1DIAGNOSTIC, 33, -9.388967951089e-01, 4.168615918611e-05, 2.3365e+02, 5.5703e+00, - 1DIAGNOSTIC, 34, -9.390676073244e-01, 4.051190730101e-05, 2.3930e+02, 5.6567e+00, - 1DIAGNOSTIC, 35, -9.392173000704e-01, 3.856951354675e-05, 2.4491e+02, 5.6101e+00, - 1DIAGNOSTIC, 36, -9.393545330818e-01, 3.589455126569e-05, 2.5047e+02, 5.5569e+00, - 1DIAGNOSTIC, 37, -9.394787627015e-01, 3.266582093429e-05, 2.5611e+02, 5.6358e+00, - 1DIAGNOSTIC, 38, -9.395910000404e-01, 2.914782602417e-05, 2.6199e+02, 5.8787e+00, - 1DIAGNOSTIC, 39, -9.396930360910e-01, 2.569426952293e-05, 2.6754e+02, 5.5582e+00, - 1DIAGNOSTIC, 40, -9.397862072208e-01, 2.260513227966e-05, 2.7308e+02, 5.5319e+00, - 1DIAGNOSTIC, 41, -9.398715258544e-01, 1.995846891647e-05, 2.7864e+02, 5.5609e+00, - 1DIAGNOSTIC, 42, -9.399492077780e-01, 1.769365426646e-05, 2.8420e+02, 5.5603e+00, - 1DIAGNOSTIC, 43, -9.400196945785e-01, 1.574739551921e-05, 2.8975e+02, 5.5577e+00, - 1DIAGNOSTIC, 44, -9.400844297249e-01, 1.406976266069e-05, 2.9530e+02, 5.5425e+00, - 1DIAGNOSTIC, 45, -9.401433831471e-01, 1.258753570820e-05, 3.0094e+02, 5.6453e+00, - 1DIAGNOSTIC, 46, -9.401961258203e-01, 1.127734800621e-05, 3.0657e+02, 5.6245e+00, - 1DIAGNOSTIC, 47, -9.402442709030e-01, 1.011478574689e-05, 3.1215e+02, 5.5864e+00, - 1DIAGNOSTIC, 48, -9.402895613361e-01, 9.085677977402e-06, 3.1771e+02, 5.5528e+00, - 1DIAGNOSTIC, 49, -9.403305226193e-01, 8.170345100346e-06, 3.2337e+02, 5.6679e+00, - 1DIAGNOSTIC, 50, -9.403671478063e-01, 7.352353044953e-06, 3.2895e+02, 5.5725e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.960627051044e-01, 1.797693134862e+308, 3.7665e+02, 4.7701e+01, - 1DIAGNOSTIC, 2, -8.982334629168e-01, 1.797693134862e+308, 4.2420e+02, 4.7554e+01, - 1DIAGNOSTIC, 3, -9.004460239520e-01, 1.797693134862e+308, 4.6914e+02, 4.4936e+01, - 1DIAGNOSTIC, 4, -9.025359008185e-01, 1.797693134862e+308, 5.1330e+02, 4.4160e+01, - 1DIAGNOSTIC, 5, -9.041208361182e-01, 1.797693134862e+308, 5.5745e+02, 4.4155e+01, - 1DIAGNOSTIC, 6, -9.052738651609e-01, 1.797693134862e+308, 6.0189e+02, 4.4434e+01, - 1DIAGNOSTIC, 7, -9.061489999060e-01, 1.797693134862e+308, 6.4644e+02, 4.4549e+01, - 1DIAGNOSTIC, 8, -9.068715770978e-01, 1.797693134862e+308, 6.9049e+02, 4.4059e+01, - 1DIAGNOSTIC, 9, -9.075237877086e-01, 1.797693134862e+308, 7.3471e+02, 4.4220e+01, - 1DIAGNOSTIC, 10, -9.081696418338e-01, 8.402607315189e-04, 7.7960e+02, 4.4885e+01, - 1DIAGNOSTIC, 11, -9.087654186243e-01, 6.376749493855e-04, 8.2438e+02, 4.4783e+01, - 1DIAGNOSTIC, 12, -9.095823488094e-01, 4.894669432936e-04, 8.6898e+02, 4.4600e+01, - 1DIAGNOSTIC, 13, -9.103903261242e-01, 3.920926323150e-04, 9.1416e+02, 4.5175e+01, - 1DIAGNOSTIC, 14, -9.113572929829e-01, 3.410219594470e-04, 9.5844e+02, 4.4285e+01, - 1DIAGNOSTIC, 15, -9.121490494434e-01, 3.149412228396e-04, 1.0027e+03, 4.4244e+01, - 1DIAGNOSTIC, 16, -9.131105442993e-01, 3.045201532680e-04, 1.0475e+03, 4.4781e+01, - 1DIAGNOSTIC, 17, -9.140270594295e-01, 3.000778582984e-04, 1.0920e+03, 4.4578e+01, - 1DIAGNOSTIC, 18, -9.148181598468e-01, 2.945241734309e-04, 1.1366e+03, 4.4532e+01, - 1DIAGNOSTIC, 19, -9.154849116471e-01, 2.839028578561e-04, 1.1810e+03, 4.4384e+01, - 1DIAGNOSTIC, 20, -9.160912984771e-01, 2.675819864734e-04, 1.2253e+03, 4.4295e+01, - Elapsed time (stage 2): 1226 - - -Total elapsed time: 1278 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:22:50 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-T1map_to-fsnative_InverseWarped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:22:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:22:53 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:22:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:00 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 16962 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:05 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:05 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17067 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:05 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/anat/sub-PNC005_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:08 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17123 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:08 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17131 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:08 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:12 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:15 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:15 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:16 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:17 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:19 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:19 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:21 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:23 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:24 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:24 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:24 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/surf/sub-PNC005_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:24 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:34 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:45 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01/sub-PNC005_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC005 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:45 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC005 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:46 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC005 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:46 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17752 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:48 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:48 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc/sub-PNC005_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/xfm/sub-PNC005_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 17784 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:50 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:50 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC005_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 72.950 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/logs/proc_func_18-03-2024-17507.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:23:56 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC005 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-01/QC/sub-PNC005_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/8534_micapipe_proc-func_sub-PNC005_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC005* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 73.000 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC005_ses-01 -========================reprocessing without filter=================== -sub-PNC005_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC005 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC005 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC005 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC005 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:24:01 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:24:01 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-1_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:26:08 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:28:16 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:28:30 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.54 (mm) at sub-brick 209 -++ Max delta displ in automask = 0.38 (mm) at sub-brick 170 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:41:24 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:41:43 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-2_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:43:52 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:46:03 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-02/func/sub-PNC005_ses-02_task-rest_echo-3_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:48:20 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.617 -1.596 2.543 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.6 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -1.021 -2.822 3.201 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.7 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:53:08 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:53:36 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55e840d016f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.036, 53.0104, -131.35] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e840b78730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e840d18010 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55e840d02b00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.2223, 111.209, -146.311] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e840d0ae10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e841514bb0 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55e841513ad0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.036, 53.0104, -131.35] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e840d073f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e84203ee20 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55e841513620) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.2223, 111.209, -146.311] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e840d0e110) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55e842838e70 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.584050778582e-01, 1.797693134862e+308, 4.1344e-02, 4.1343e-02, - 2DIAGNOSTIC, 2, -5.596635931967e-01, 1.797693134862e+308, 4.2745e-02, 1.4009e-03, - 2DIAGNOSTIC, 3, -5.641112457155e-01, 1.797693134862e+308, 4.4105e-02, 1.3599e-03, - 2DIAGNOSTIC, 4, -5.836329559707e-01, 1.797693134862e+308, 4.5337e-02, 1.2319e-03, - 2DIAGNOSTIC, 5, -5.961757385976e-01, 1.797693134862e+308, 4.6592e-02, 1.2548e-03, - 2DIAGNOSTIC, 6, -6.065823448767e-01, 1.797693134862e+308, 4.7899e-02, 1.3070e-03, - 2DIAGNOSTIC, 7, -6.189311080459e-01, 1.797693134862e+308, 5.0138e-02, 2.2392e-03, - 2DIAGNOSTIC, 8, -6.267549588936e-01, 1.797693134862e+308, 5.1692e-02, 1.5540e-03, - 2DIAGNOSTIC, 9, -6.270867576655e-01, 1.797693134862e+308, 5.2993e-02, 1.3008e-03, - 2DIAGNOSTIC, 10, -6.285811555676e-01, 9.108528659756e-03, 5.4510e-02, 1.5171e-03, - 2DIAGNOSTIC, 11, -6.316453688967e-01, 7.542514359447e-03, 5.6265e-02, 1.7550e-03, - 2DIAGNOSTIC, 12, -6.550428567697e-01, 6.523457240622e-03, 5.7731e-02, 1.4660e-03, - 2DIAGNOSTIC, 13, -7.319183004258e-01, 7.895794363965e-03, 5.9193e-02, 1.4620e-03, - 2DIAGNOSTIC, 14, -7.446134724600e-01, 9.303699871226e-03, 6.1171e-02, 1.9779e-03, - 2DIAGNOSTIC, 15, -7.523304223520e-01, 1.027773683957e-02, 6.3632e-02, 2.4612e-03, - 2DIAGNOSTIC, 16, -7.577410934035e-01, 1.063267488527e-02, 6.5362e-02, 1.7300e-03, - 2DIAGNOSTIC, 17, -7.623070391318e-01, 1.038391553822e-02, 6.7068e-02, 1.7061e-03, - 2DIAGNOSTIC, 18, -7.706567495123e-01, 9.569772548008e-03, 6.8827e-02, 1.7591e-03, - 2DIAGNOSTIC, 19, -7.721372973135e-01, 8.011652868113e-03, 7.0578e-02, 1.7512e-03, - 2DIAGNOSTIC, 20, -7.735213729055e-01, 5.986404831371e-03, 7.2320e-02, 1.7419e-03, - 2DIAGNOSTIC, 21, -7.744687217717e-01, 3.719686951810e-03, 7.3800e-02, 1.4799e-03, - 2DIAGNOSTIC, 22, -7.843836538629e-01, 1.940696684349e-03, 7.5277e-02, 1.4770e-03, - 2DIAGNOSTIC, 23, -7.898109012623e-01, 1.641520284882e-03, 7.7039e-02, 1.7619e-03, - 2DIAGNOSTIC, 24, -7.931648138743e-01, 1.492320991650e-03, 7.9456e-02, 2.4168e-03, - 2DIAGNOSTIC, 25, -7.948390112060e-01, 1.374466367962e-03, 8.1156e-02, 1.6999e-03, - 2DIAGNOSTIC, 26, -7.974292273704e-01, 1.264631300217e-03, 8.2655e-02, 1.4999e-03, - 2DIAGNOSTIC, 27, -7.990585244077e-01, 1.133171787515e-03, 8.4167e-02, 1.5111e-03, - 2DIAGNOSTIC, 28, -8.004174984770e-01, 1.044490776130e-03, 8.5722e-02, 1.5559e-03, - 2DIAGNOSTIC, 29, -8.019363376396e-01, 9.073229657576e-04, 8.7960e-02, 2.2380e-03, - 2DIAGNOSTIC, 30, -8.032659494840e-01, 7.331856872286e-04, 8.9698e-02, 1.7371e-03, - 2DIAGNOSTIC, 31, -8.027580632913e-01, 5.056008479681e-04, 9.1882e-02, 2.1839e-03, - 2DIAGNOSTIC, 32, -8.027718100649e-01, 3.688604541881e-04, 9.3365e-02, 1.4839e-03, - 2DIAGNOSTIC, 33, -8.028614064488e-01, 2.722477666415e-04, 9.4867e-02, 1.5011e-03, - 2DIAGNOSTIC, 34, -8.029208400439e-01, 1.955361254865e-04, 9.6393e-02, 1.5261e-03, - 2DIAGNOSTIC, 35, -8.029750436298e-01, 1.240491361088e-04, 9.7849e-02, 1.4560e-03, - 2DIAGNOSTIC, 36, -8.031552936479e-01, 7.547786530138e-05, 9.9780e-02, 1.9310e-03, - 2DIAGNOSTIC, 37, -8.027252367761e-01, 3.540745525211e-05, 1.0127e-01, 1.4892e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.203155074302e-01, 1.797693134862e+308, 1.4832e-01, 4.7049e-02, - 2DIAGNOSTIC, 2, -4.199871888765e-01, 1.797693134862e+308, 1.5086e-01, 2.5411e-03, - 2DIAGNOSTIC, 3, -4.217864688580e-01, 1.797693134862e+308, 1.5349e-01, 2.6300e-03, - 2DIAGNOSTIC, 4, -4.240532594574e-01, 1.797693134862e+308, 1.5605e-01, 2.5592e-03, - 2DIAGNOSTIC, 5, -4.262511738700e-01, 1.797693134862e+308, 1.5824e-01, 2.1889e-03, - 2DIAGNOSTIC, 6, -4.327311243759e-01, 1.797693134862e+308, 1.6075e-01, 2.5089e-03, - 2DIAGNOSTIC, 7, -4.327586622637e-01, 1.797693134862e+308, 1.6293e-01, 2.1861e-03, - 2DIAGNOSTIC, 8, -4.416578568901e-01, 1.797693134862e+308, 1.6547e-01, 2.5411e-03, - 2DIAGNOSTIC, 9, -4.721544229491e-01, 1.797693134862e+308, 1.6767e-01, 2.1961e-03, - 2DIAGNOSTIC, 10, -5.089513725208e-01, 9.903349145293e-03, 1.7008e-01, 2.4159e-03, - 2DIAGNOSTIC, 11, -5.845563746910e-01, 1.606175532946e-02, 1.7296e-01, 2.8720e-03, - 2DIAGNOSTIC, 12, -6.071179612283e-01, 2.050823651602e-02, 1.7582e-01, 2.8620e-03, - 2DIAGNOSTIC, 13, -6.201681327791e-01, 2.293757950423e-02, 1.7837e-01, 2.5499e-03, - 2DIAGNOSTIC, 14, -6.293265538589e-01, 2.334925262033e-02, 1.8087e-01, 2.4970e-03, - 2DIAGNOSTIC, 15, -6.365686351120e-01, 2.190782081232e-02, 1.8340e-01, 2.5361e-03, - 2DIAGNOSTIC, 16, -6.365895915933e-01, 1.891831884894e-02, 1.8561e-01, 2.2070e-03, - 2DIAGNOSTIC, 17, -6.375988652291e-01, 1.468765527182e-02, 1.8899e-01, 3.3841e-03, - 2DIAGNOSTIC, 18, -6.386091529249e-01, 1.000817139127e-02, 1.9121e-01, 2.2128e-03, - 2DIAGNOSTIC, 19, -6.393581249784e-01, 5.892465228586e-03, 1.9432e-01, 3.1140e-03, - 2DIAGNOSTIC, 20, -6.395287444521e-01, 2.664176403180e-03, 1.9652e-01, 2.1999e-03, - 2DIAGNOSTIC, 21, -6.396952035163e-01, 1.450599241271e-03, 1.9871e-01, 2.1882e-03, - 2DIAGNOSTIC, 22, -6.400668626005e-01, 7.745189731224e-04, 2.0150e-01, 2.7959e-03, - 2DIAGNOSTIC, 23, -6.399650039233e-01, 3.831204524901e-04, 2.0445e-01, 2.9440e-03, - 2DIAGNOSTIC, 24, -6.400789422385e-01, 1.890170203841e-04, 2.0670e-01, 2.2550e-03, - 2DIAGNOSTIC, 25, -6.401254785961e-01, 1.451654916460e-04, 2.0926e-01, 2.5589e-03, - 2DIAGNOSTIC, 26, -6.405076295114e-01, 9.942429926814e-05, 2.1154e-01, 2.2810e-03, - 2DIAGNOSTIC, 27, -6.405997362523e-01, 6.842401038981e-05, 2.1440e-01, 2.8560e-03, - 2DIAGNOSTIC, 28, -6.407458503274e-01, 5.420165761894e-05, 2.1667e-01, 2.2690e-03, - 2DIAGNOSTIC, 29, -6.409316025123e-01, 5.236045854335e-05, 2.1926e-01, 2.5971e-03, - 2DIAGNOSTIC, 30, -6.410787660861e-01, 5.102333857564e-05, 2.2184e-01, 2.5761e-03, - 2DIAGNOSTIC, 31, -6.411149781239e-01, 4.807066807578e-05, 2.2447e-01, 2.6319e-03, - 2DIAGNOSTIC, 32, -6.411620275741e-01, 4.745958678638e-05, 2.2675e-01, 2.2759e-03, - 2DIAGNOSTIC, 33, -6.411475696139e-01, 4.079156207865e-05, 2.2952e-01, 2.7680e-03, - 2DIAGNOSTIC, 34, -6.411566603685e-01, 3.261174037334e-05, 2.3239e-01, 2.8710e-03, - 2DIAGNOSTIC, 35, -6.411597581788e-01, 2.250758052820e-05, 2.3562e-01, 3.2320e-03, - 2DIAGNOSTIC, 36, -6.411636873104e-01, 1.623698661845e-05, 2.3853e-01, 2.9061e-03, - 2DIAGNOSTIC, 37, -6.411800382952e-01, 1.031577399011e-05, 2.4148e-01, 2.9571e-03, - 2DIAGNOSTIC, 38, -6.411816893469e-01, 5.695724497483e-06, 2.4409e-01, 2.6021e-03, - 2DIAGNOSTIC, 39, -6.411860114597e-01, 3.209361165993e-06, 2.4669e-01, 2.6090e-03, - 2DIAGNOSTIC, 40, -6.411993402108e-01, 2.572736076040e-06, 2.5196e-01, 5.2669e-03, - 2DIAGNOSTIC, 41, -6.411995062890e-01, 2.214799914323e-06, 2.5578e-01, 3.8199e-03, - 2DIAGNOSTIC, 42, -6.411995152150e-01, 2.290693651080e-06, 2.5916e-01, 3.3751e-03, - 2DIAGNOSTIC, 43, -6.411995167758e-01, 2.060651018741e-06, 2.6232e-01, 3.1669e-03, - 2DIAGNOSTIC, 44, -6.411995170601e-01, 1.822177367244e-06, 2.7083e-01, 8.5120e-03, - 2DIAGNOSTIC, 45, -6.411995170601e-01, 1.527552625700e-06, 2.7579e-01, 4.9560e-03, - 2DIAGNOSTIC, 46, -6.411995170601e-01, 1.210200333560e-06, 2.7874e-01, 2.9500e-03, - 2DIAGNOSTIC, 47, -6.411995170601e-01, 1.031425991949e-06, 2.8199e-01, 3.2480e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.931557405432e-01, 1.797693134862e+308, 3.5407e-01, 7.2084e-02, - 2DIAGNOSTIC, 2, -4.937909739836e-01, 1.797693134862e+308, 3.6519e-01, 1.1121e-02, - 2DIAGNOSTIC, 3, -4.948079866554e-01, 1.797693134862e+308, 3.7609e-01, 1.0899e-02, - 2DIAGNOSTIC, 4, -4.964288624980e-01, 1.797693134862e+308, 3.8671e-01, 1.0617e-02, - 2DIAGNOSTIC, 5, -4.981935780601e-01, 1.797693134862e+308, 3.9733e-01, 1.0624e-02, - 2DIAGNOSTIC, 6, -4.983626007519e-01, 1.797693134862e+308, 4.0789e-01, 1.0554e-02, - 2DIAGNOSTIC, 7, -4.986080397212e-01, 1.797693134862e+308, 4.1861e-01, 1.0718e-02, - 2DIAGNOSTIC, 8, -4.993420852762e-01, 1.797693134862e+308, 4.3499e-01, 1.6380e-02, - 2DIAGNOSTIC, 9, -4.997678481649e-01, 1.797693134862e+308, 4.4816e-01, 1.3175e-02, - 2DIAGNOSTIC, 10, -4.998641972237e-01, 9.267862233754e-04, 4.6201e-01, 1.3845e-02, - 2DIAGNOSTIC, 11, -4.999175066782e-01, 7.022146373147e-04, 4.7602e-01, 1.4018e-02, - 2DIAGNOSTIC, 12, -4.999726956061e-01, 4.862806867479e-04, 4.9008e-01, 1.4051e-02, - 2DIAGNOSTIC, 13, -5.000034500840e-01, 3.044534475551e-04, 5.0466e-01, 1.4584e-02, - 2DIAGNOSTIC, 14, -5.000192473003e-01, 1.857892713958e-04, 5.1697e-01, 1.2309e-02, - 2DIAGNOSTIC, 15, -5.000397775354e-01, 1.344441846168e-04, 5.3089e-01, 1.3925e-02, - 2DIAGNOSTIC, 16, -5.000761401367e-01, 8.499432323233e-05, 5.4800e-01, 1.7108e-02, - 2DIAGNOSTIC, 17, -5.000908317560e-01, 4.192753360919e-05, 5.6236e-01, 1.4362e-02, - 2DIAGNOSTIC, 18, -5.001067911898e-01, 2.338294009459e-05, 5.7631e-01, 1.3949e-02, - 2DIAGNOSTIC, 19, -5.001161571301e-01, 1.780852391761e-05, 5.9042e-01, 1.4105e-02, - 2DIAGNOSTIC, 20, -5.001206767744e-01, 1.414814203505e-05, 6.0364e-01, 1.3219e-02, - 2DIAGNOSTIC, 21, -5.001259666099e-01, 1.121883332320e-05, 6.1480e-01, 1.1160e-02, - 2DIAGNOSTIC, 22, -5.001317989739e-01, 9.212182409457e-06, 6.2609e-01, 1.1290e-02, - 2DIAGNOSTIC, 23, -5.001354825181e-01, 7.507344180063e-06, 6.3707e-01, 1.0987e-02, - 2DIAGNOSTIC, 24, -5.001667098788e-01, 6.485168793487e-06, 6.4938e-01, 1.2304e-02, - 2DIAGNOSTIC, 25, -5.001616738185e-01, 5.379902523028e-06, 6.6098e-01, 1.1600e-02, - 2DIAGNOSTIC, 26, -5.001743146001e-01, 5.055579686081e-06, 6.7615e-01, 1.5176e-02, - 2DIAGNOSTIC, 27, -5.001655032760e-01, 4.512055978699e-06, 6.9616e-01, 2.0009e-02, - 2DIAGNOSTIC, 28, -5.001593937114e-01, 3.893445498865e-06, 7.0957e-01, 1.3412e-02, - 2DIAGNOSTIC, 29, -5.001675593113e-01, 3.397392285845e-06, 7.2136e-01, 1.1788e-02, - 2DIAGNOSTIC, 30, -5.001691439851e-01, 2.822566459705e-06, 7.3363e-01, 1.2268e-02, - 2DIAGNOSTIC, 31, -5.001792836261e-01, 2.404963036072e-06, 7.7134e-01, 3.7713e-02, - 2DIAGNOSTIC, 32, -5.001792836220e-01, 1.989935399835e-06, 8.0730e-01, 3.5959e-02, - 2DIAGNOSTIC, 33, -5.001792836220e-01, 1.560811071499e-06, 8.2051e-01, 1.3212e-02, - 2DIAGNOSTIC, 34, -5.001792836220e-01, 1.626629113585e-06, 8.3363e-01, 1.3119e-02, - 2DIAGNOSTIC, 35, -5.001792836220e-01, 1.530477030141e-06, 8.4773e-01, 1.4102e-02, - 2DIAGNOSTIC, 36, -5.001792836220e-01, 1.582720417923e-06, 8.5924e-01, 1.1505e-02, - 2DIAGNOSTIC, 37, -5.001792836220e-01, 1.434224229952e-06, 8.7200e-01, 1.2761e-02, - 2DIAGNOSTIC, 38, -5.001792836220e-01, 1.146730025142e-06, 8.8525e-01, 1.3253e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.255750408165e-01, 1.797693134862e+308, 1.0600e+00, 1.7475e-01, - Elapsed time (stage 0): 1.0851e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.402696136656e-01, 1.797693134862e+308, 3.2787e-02, 3.2787e-02, - 2DIAGNOSTIC, 2, -9.427889079300e-01, 1.797693134862e+308, 3.4115e-02, 1.3280e-03, - 2DIAGNOSTIC, 3, -9.472719582843e-01, 1.797693134862e+308, 3.5250e-02, 1.1351e-03, - 2DIAGNOSTIC, 4, -9.526724699395e-01, 1.797693134862e+308, 3.6431e-02, 1.1811e-03, - 2DIAGNOSTIC, 5, -9.612167868444e-01, 1.797693134862e+308, 3.7578e-02, 1.1470e-03, - 2DIAGNOSTIC, 6, -9.738557586781e-01, 1.797693134862e+308, 3.8733e-02, 1.1549e-03, - 2DIAGNOSTIC, 7, -9.812066764142e-01, 1.797693134862e+308, 4.0522e-02, 1.7889e-03, - 2DIAGNOSTIC, 8, -9.878563283706e-01, 1.797693134862e+308, 4.1710e-02, 1.1880e-03, - 2DIAGNOSTIC, 9, -9.978247795975e-01, 1.797693134862e+308, 4.3318e-02, 1.6079e-03, - 2DIAGNOSTIC, 10, -1.011462937438e+00, 4.786008310013e-03, 4.4899e-02, 1.5810e-03, - 2DIAGNOSTIC, 11, -1.013191875122e+00, 4.562987179674e-03, 4.6622e-02, 1.7228e-03, - 2DIAGNOSTIC, 12, -1.015666416338e+00, 4.095032639537e-03, 4.7961e-02, 1.3390e-03, - 2DIAGNOSTIC, 13, -1.016167477639e+00, 3.447681108765e-03, 4.9288e-02, 1.3270e-03, - 2DIAGNOSTIC, 14, -1.018248223122e+00, 2.734410834430e-03, 5.0767e-02, 1.4791e-03, - 2DIAGNOSTIC, 15, -1.018402948161e+00, 2.029186411826e-03, 5.2331e-02, 1.5640e-03, - 2DIAGNOSTIC, 16, -1.019007163701e+00, 1.467097813719e-03, 5.4403e-02, 2.0721e-03, - 2DIAGNOSTIC, 17, -1.019284637022e+00, 9.694562052470e-04, 5.6170e-02, 1.7672e-03, - 2DIAGNOSTIC, 18, -1.020198750852e+00, 5.580979482625e-04, 5.8799e-02, 2.6290e-03, - 2DIAGNOSTIC, 19, -1.020982184047e+00, 2.960879087613e-04, 6.0837e-02, 2.0380e-03, - 2DIAGNOSTIC, 20, -1.020490610070e+00, 2.211988261684e-04, 6.2140e-02, 1.3030e-03, - 2DIAGNOSTIC, 21, -1.020515994296e+00, 1.569930411951e-04, 6.3471e-02, 1.3311e-03, - 2DIAGNOSTIC, 22, -1.021315313662e+00, 1.268306280695e-04, 6.4774e-02, 1.3030e-03, - 2DIAGNOSTIC, 23, -1.024566269188e+00, 1.328871968474e-04, 6.6349e-02, 1.5750e-03, - 2DIAGNOSTIC, 24, -1.027787493663e+00, 1.878853589679e-04, 6.7916e-02, 1.5669e-03, - 2DIAGNOSTIC, 25, -1.031206358083e+00, 2.610712801344e-04, 6.9607e-02, 1.6911e-03, - 2DIAGNOSTIC, 26, -1.033082223556e+00, 3.311967095987e-04, 7.0943e-02, 1.3361e-03, - 2DIAGNOSTIC, 27, -1.035995324009e+00, 3.982716690182e-04, 7.2974e-02, 2.0308e-03, - 2DIAGNOSTIC, 28, -1.037066086124e+00, 4.420067291133e-04, 7.4738e-02, 1.7638e-03, - 2DIAGNOSTIC, 29, -1.037275372951e+00, 4.505548201409e-04, 7.6091e-02, 1.3530e-03, - 2DIAGNOSTIC, 30, -1.035134520715e+00, 3.916794592628e-04, 7.7453e-02, 1.3621e-03, - 2DIAGNOSTIC, 31, -1.035450191606e+00, 3.037326712359e-04, 7.8997e-02, 1.5440e-03, - 2DIAGNOSTIC, 32, -1.035653880219e+00, 2.008186869019e-04, 8.0343e-02, 1.3461e-03, - 2DIAGNOSTIC, 33, -1.034779548647e+00, 1.049219326320e-04, 8.1952e-02, 1.6088e-03, - 2DIAGNOSTIC, 34, -1.035135477142e+00, 3.461107211399e-05, 8.3374e-02, 1.4222e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.114417686289e-01, 1.797693134862e+308, 1.2510e-01, 4.1729e-02, - 2DIAGNOSTIC, 2, -7.117134922877e-01, 1.797693134862e+308, 1.2772e-01, 2.6171e-03, - 2DIAGNOSTIC, 3, -7.137007763735e-01, 1.797693134862e+308, 1.3031e-01, 2.5909e-03, - 2DIAGNOSTIC, 4, -7.170572044913e-01, 1.797693134862e+308, 1.3287e-01, 2.5630e-03, - 2DIAGNOSTIC, 5, -7.227486461327e-01, 1.797693134862e+308, 1.3505e-01, 2.1791e-03, - 2DIAGNOSTIC, 6, -7.321906541314e-01, 1.797693134862e+308, 1.3732e-01, 2.2712e-03, - 2DIAGNOSTIC, 7, -7.389180544841e-01, 1.797693134862e+308, 1.3945e-01, 2.1241e-03, - 2DIAGNOSTIC, 8, -7.528586073308e-01, 1.797693134862e+308, 1.4258e-01, 3.1331e-03, - 2DIAGNOSTIC, 9, -7.595626137300e-01, 1.797693134862e+308, 1.4632e-01, 3.7410e-03, - 2DIAGNOSTIC, 10, -7.596366083235e-01, 5.021855608619e-03, 1.4905e-01, 2.7311e-03, - 2DIAGNOSTIC, 11, -7.595511928311e-01, 4.680759812511e-03, 1.5168e-01, 2.6221e-03, - 2DIAGNOSTIC, 12, -7.596576831424e-01, 3.991756288036e-03, 1.5399e-01, 2.3129e-03, - 2DIAGNOSTIC, 13, -7.597628494334e-01, 3.109624209292e-03, 1.5669e-01, 2.6989e-03, - 2DIAGNOSTIC, 14, -7.599933934486e-01, 2.170654121937e-03, 1.5919e-01, 2.4998e-03, - 2DIAGNOSTIC, 15, -7.603636080959e-01, 1.317550968386e-03, 1.6164e-01, 2.4509e-03, - 2DIAGNOSTIC, 16, -7.610006572458e-01, 6.962186338161e-04, 1.6411e-01, 2.4762e-03, - 2DIAGNOSTIC, 17, -7.616444909567e-01, 2.441836095354e-04, 1.6657e-01, 2.4559e-03, - 2DIAGNOSTIC, 18, -7.622541008059e-01, 1.254385705526e-04, 1.6896e-01, 2.3940e-03, - 2DIAGNOSTIC, 19, -7.635104890062e-01, 1.675906453488e-04, 1.7164e-01, 2.6739e-03, - 2DIAGNOSTIC, 20, -7.641271582012e-01, 2.027520930102e-04, 1.7493e-01, 3.2909e-03, - 2DIAGNOSTIC, 21, -7.644567125333e-01, 2.200970483439e-04, 1.7736e-01, 2.4319e-03, - 2DIAGNOSTIC, 22, -7.655737591117e-01, 2.367059176639e-04, 1.8051e-01, 3.1512e-03, - 2DIAGNOSTIC, 23, -7.671671013852e-01, 2.574013549814e-04, 1.8613e-01, 5.6219e-03, - 2DIAGNOSTIC, 24, -7.673478336999e-01, 2.581424778647e-04, 1.8923e-01, 3.0940e-03, - 2DIAGNOSTIC, 25, -7.678687145722e-01, 2.484542768345e-04, 1.9193e-01, 2.7061e-03, - 2DIAGNOSTIC, 26, -7.683030964602e-01, 2.320412678910e-04, 1.9468e-01, 2.7468e-03, - 2DIAGNOSTIC, 27, -7.686893365209e-01, 2.092651147119e-04, 1.9735e-01, 2.6710e-03, - 2DIAGNOSTIC, 28, -7.690027199138e-01, 1.802837114350e-04, 2.0023e-01, 2.8739e-03, - 2DIAGNOSTIC, 29, -7.689617496370e-01, 1.522083436819e-04, 2.0275e-01, 2.5280e-03, - 2DIAGNOSTIC, 30, -7.692011038993e-01, 1.229055439300e-04, 2.0557e-01, 2.8148e-03, - 2DIAGNOSTIC, 31, -7.694850077812e-01, 9.118603967680e-05, 2.0839e-01, 2.8191e-03, - 2DIAGNOSTIC, 32, -7.696419715096e-01, 6.735503874862e-05, 2.1123e-01, 2.8410e-03, - 2DIAGNOSTIC, 33, -7.696141935214e-01, 5.661534328186e-05, 2.1413e-01, 2.8992e-03, - 2DIAGNOSTIC, 34, -7.696789799843e-01, 4.398480546988e-05, 2.1701e-01, 2.8801e-03, - 2DIAGNOSTIC, 35, -7.696988815723e-01, 3.373374861285e-05, 2.1960e-01, 2.5921e-03, - 2DIAGNOSTIC, 36, -7.697241307919e-01, 2.559064195567e-05, 2.2224e-01, 2.6410e-03, - 2DIAGNOSTIC, 37, -7.696784764609e-01, 1.891671146260e-05, 2.2455e-01, 2.3110e-03, - 2DIAGNOSTIC, 38, -7.695803916107e-01, 1.311101847893e-05, 2.2682e-01, 2.2659e-03, - 2DIAGNOSTIC, 39, -7.695959681401e-01, 6.202500416393e-06, 2.2912e-01, 2.2988e-03, - 2DIAGNOSTIC, 40, -7.696225363935e-01, 1.535112810438e-06, 2.3144e-01, 2.3198e-03, - 2DIAGNOSTIC, 41, -7.698384508524e-01, 1.543449134986e-06, 2.3477e-01, 3.3360e-03, - 2DIAGNOSTIC, 42, -7.698450315923e-01, 2.915218842683e-06, 2.3743e-01, 2.6622e-03, - 2DIAGNOSTIC, 43, -7.697939408167e-01, 3.359660747687e-06, 2.3980e-01, 2.3661e-03, - 2DIAGNOSTIC, 44, -7.697455638589e-01, 3.708546442549e-06, 2.4231e-01, 2.5082e-03, - 2DIAGNOSTIC, 45, -7.696447621558e-01, 3.056466597449e-06, 2.4479e-01, 2.4791e-03, - 2DIAGNOSTIC, 46, -7.696645280948e-01, 2.560052232346e-06, 2.4750e-01, 2.7130e-03, - 2DIAGNOSTIC, 47, -7.697209190078e-01, 1.993685636935e-06, 2.4994e-01, 2.4350e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.790143415655e-01, 1.797693134862e+308, 3.1168e-01, 6.1742e-02, - 2DIAGNOSTIC, 2, -5.792958082869e-01, 1.797693134862e+308, 3.2318e-01, 1.1506e-02, - 2DIAGNOSTIC, 3, -5.797455208542e-01, 1.797693134862e+308, 3.3500e-01, 1.1817e-02, - 2DIAGNOSTIC, 4, -5.804346902026e-01, 1.797693134862e+308, 3.4660e-01, 1.1595e-02, - 2DIAGNOSTIC, 5, -5.813186803536e-01, 1.797693134862e+308, 3.5799e-01, 1.1398e-02, - 2DIAGNOSTIC, 6, -5.823770647071e-01, 1.797693134862e+308, 3.6958e-01, 1.1581e-02, - 2DIAGNOSTIC, 7, -5.828525999901e-01, 1.797693134862e+308, 3.8673e-01, 1.7160e-02, - 2DIAGNOSTIC, 8, -5.831093610795e-01, 1.797693134862e+308, 3.9798e-01, 1.1245e-02, - 2DIAGNOSTIC, 9, -5.831753496705e-01, 1.797693134862e+308, 4.0946e-01, 1.1479e-02, - 2DIAGNOSTIC, 10, -5.832277210692e-01, 5.539551999519e-04, 4.2149e-01, 1.2031e-02, - 2DIAGNOSTIC, 11, -5.833431064946e-01, 4.439274804513e-04, 4.3843e-01, 1.6944e-02, - 2DIAGNOSTIC, 12, -5.834707094166e-01, 3.292074346931e-04, 4.5468e-01, 1.6247e-02, - 2DIAGNOSTIC, 13, -5.834735950850e-01, 2.197245039360e-04, 4.6682e-01, 1.2140e-02, - 2DIAGNOSTIC, 14, -5.835476512968e-01, 1.326784267104e-04, 4.7844e-01, 1.1622e-02, - 2DIAGNOSTIC, 15, -5.836368709287e-01, 7.632341160096e-05, 4.9016e-01, 1.1713e-02, - 2DIAGNOSTIC, 16, -5.837404289237e-01, 5.525764831314e-05, 5.0191e-01, 1.1755e-02, - 2DIAGNOSTIC, 17, -5.838726618053e-01, 4.896318909457e-05, 5.1361e-01, 1.1700e-02, - 2DIAGNOSTIC, 18, -5.841414674248e-01, 5.323273650380e-05, 5.3131e-01, 1.7701e-02, - 2DIAGNOSTIC, 19, -5.842026854865e-01, 5.544621148681e-05, 5.4809e-01, 1.6777e-02, - 2DIAGNOSTIC, 20, -5.842341551472e-01, 5.448071115499e-05, 5.6012e-01, 1.2030e-02, - 2DIAGNOSTIC, 21, -5.844289358979e-01, 5.586626135058e-05, 5.7360e-01, 1.3480e-02, - 2DIAGNOSTIC, 22, -5.844862013560e-01, 5.602631904959e-05, 5.8567e-01, 1.2075e-02, - 2DIAGNOSTIC, 23, -5.845493224013e-01, 5.239380346062e-05, 5.9909e-01, 1.3420e-02, - 2DIAGNOSTIC, 24, -5.845928967822e-01, 4.668864020424e-05, 6.1593e-01, 1.6841e-02, - 2DIAGNOSTIC, 25, -5.846146470059e-01, 3.938433237296e-05, 6.2826e-01, 1.2325e-02, - 2DIAGNOSTIC, 26, -5.848807428831e-01, 3.594699145995e-05, 6.4077e-01, 1.2512e-02, - 2DIAGNOSTIC, 27, -5.858679986624e-01, 4.942800084255e-05, 6.5593e-01, 1.5160e-02, - 2DIAGNOSTIC, 28, -5.870123605787e-01, 8.155495904658e-05, 6.6805e-01, 1.2116e-02, - 2DIAGNOSTIC, 29, -5.884895068723e-01, 1.294335860352e-04, 6.8009e-01, 1.2041e-02, - 2DIAGNOSTIC, 30, -5.895362198421e-01, 1.791639969253e-04, 6.9416e-01, 1.4069e-02, - 2DIAGNOSTIC, 31, -5.899304198785e-01, 2.180144226125e-04, 7.0904e-01, 1.4882e-02, - 2DIAGNOSTIC, 32, -5.901769399599e-01, 2.385127642718e-04, 7.2107e-01, 1.2030e-02, - 2DIAGNOSTIC, 33, -5.907898505553e-01, 2.450378970709e-04, 7.3487e-01, 1.3798e-02, - 2DIAGNOSTIC, 34, -5.913562566269e-01, 2.364050608259e-04, 7.4953e-01, 1.4663e-02, - 2DIAGNOSTIC, 35, -5.915124219244e-01, 2.082834188892e-04, 7.6342e-01, 1.3887e-02, - 2DIAGNOSTIC, 36, -5.919291508946e-01, 1.713817441517e-04, 7.7698e-01, 1.3558e-02, - 2DIAGNOSTIC, 37, -5.930013520181e-01, 1.472196508724e-04, 7.9259e-01, 1.5619e-02, - 2DIAGNOSTIC, 38, -5.937245041476e-01, 1.335062881786e-04, 8.0648e-01, 1.3888e-02, - 2DIAGNOSTIC, 39, -5.941971402579e-01, 1.316985077630e-04, 8.2049e-01, 1.4008e-02, - 2DIAGNOSTIC, 40, -5.961803757565e-01, 1.543402450939e-04, 8.3644e-01, 1.5945e-02, - 2DIAGNOSTIC, 41, -5.967542509866e-01, 1.721698832506e-04, 8.4902e-01, 1.2583e-02, - 2DIAGNOSTIC, 42, -5.970513194431e-01, 1.788712881352e-04, 8.6113e-01, 1.2116e-02, - 2DIAGNOSTIC, 43, -5.980560372649e-01, 1.865234575980e-04, 8.7773e-01, 1.6596e-02, - 2DIAGNOSTIC, 44, -5.984596968446e-01, 1.865689101079e-04, 8.9091e-01, 1.3180e-02, - 2DIAGNOSTIC, 45, -5.986032314139e-01, 1.718628127658e-04, 9.0247e-01, 1.1564e-02, - 2DIAGNOSTIC, 46, -5.986873703897e-01, 1.465440382376e-04, 9.1594e-01, 1.3467e-02, - 2DIAGNOSTIC, 47, -5.988327559498e-01, 1.210212851022e-04, 9.2747e-01, 1.1532e-02, - 2DIAGNOSTIC, 48, -5.990597739275e-01, 9.462351354530e-05, 9.4184e-01, 1.4364e-02, - 2DIAGNOSTIC, 49, -5.992635939979e-01, 6.640760028083e-05, 9.5348e-01, 1.1643e-02, - 2DIAGNOSTIC, 50, -5.994637910160e-01, 5.412135729934e-05, 9.7088e-01, 1.7404e-02, - 2DIAGNOSTIC, 51, -5.995025586827e-01, 4.307710053472e-05, 9.8247e-01, 1.1585e-02, - 2DIAGNOSTIC, 52, -5.996900155883e-01, 3.270139678956e-05, 9.9401e-01, 1.1541e-02, - 2DIAGNOSTIC, 53, -5.997798613055e-01, 2.947333106878e-05, 1.0085e+00, 1.4490e-02, - 2DIAGNOSTIC, 54, -5.998099836604e-01, 2.742314175214e-05, 1.0234e+00, 1.4850e-02, - 2DIAGNOSTIC, 55, -5.998172260134e-01, 2.421335224373e-05, 1.0352e+00, 1.1836e-02, - 2DIAGNOSTIC, 56, -5.998229638340e-01, 1.963702757416e-05, 1.0474e+00, 1.2223e-02, - 2DIAGNOSTIC, 57, -5.998337244220e-01, 1.467917648151e-05, 1.0595e+00, 1.2085e-02, - 2DIAGNOSTIC, 58, -5.998432015381e-01, 1.045980957379e-05, 1.0761e+00, 1.6570e-02, - 2DIAGNOSTIC, 59, -5.998511664296e-01, 7.137186193815e-06, 1.0987e+00, 2.2651e-02, - 2DIAGNOSTIC, 60, -5.998511663134e-01, 4.919512679977e-06, 1.1108e+00, 1.2099e-02, - 2DIAGNOSTIC, 61, -5.998522126945e-01, 2.639210115351e-06, 1.1232e+00, 1.2344e-02, - 2DIAGNOSTIC, 62, -5.998530167787e-01, 1.674625803496e-06, 1.1360e+00, 1.2812e-02, - 2DIAGNOSTIC, 63, -5.998539205263e-01, 1.316122799178e-06, 1.1472e+00, 1.1246e-02, - 2DIAGNOSTIC, 64, -5.998541122684e-01, 1.118498998445e-06, 1.1601e+00, 1.2877e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.045756680934e-01, 1.797693134862e+308, 1.3406e+00, 1.8050e-01, - Elapsed time (stage 1): 1.3639e+00 - - -Total elapsed time: 2.4495e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 15:53:40 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 42 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 96 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 83.17% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 83.17% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[1228 779 200 243 196 2559 0 0 795 3968 210 8574 0 0 - 0 1030 0 1912 1081 1311 0 0 0 446 0 0 949 0 - 0 505 0 0 0 271 0 0 0 0 0 0 0 0] -[115625 85181 36073 33989 23625 23616 34492 30696 22535 21148 - 21318 15909 16148 13494 14268 13995 12839 8570 10160 7353 - 4034 10630 4311 2932 2367 3676 5166 3088 1946 2746 - 8305 1252 1611 2307 2198 1955 1355 1190 2124 2003 - 1534 1888] -[ 0 0 437 8466 0 255 1027 13733 0 0 1653 272 - 0 0 0 0 0 0 16445 0 0 802 14207 0 - 0 0 0 0 0 0 0 0 0 0 0 0 - 0 0 2596 0 9444 0] -[ 10895 12354 1345 2744 8040 2614 107191 5111 1112 15713 - 5683 13898 3128 1549 15223 1787 9763 3137 1383 4886 - 3253 102499 4122 11269 9052 22533 9411 12713 8467 6364 - 7314 9505 6451 9670 2143 4332 6521 6244 4397 11064 - 1519 2154] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:03:17 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:03:23 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:20 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:20 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:31 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:34 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC005 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:07:48 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:08:15 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:10:09 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:10:10 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:11:31 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:11:32 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5647c7423d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [75.6715, 111.658, -146.76] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5647c729a730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f1ac5d6b010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5647c7427020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.485, 53.4596, -131.8] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5647c742d0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f1ac26ac010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5647c743d840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [75.6715, 111.658, -146.76] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5647c7429890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f1abd9d8010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5647c74413e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.485, 53.4596, -131.8] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5647c7430130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f1aba319010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.069008817419e-01, 1.797693134862e+308, 2.6232e-01, 2.6232e-01, - 2DIAGNOSTIC, 2, -4.097149279906e-01, 1.797693134862e+308, 2.6397e-01, 1.6439e-03, - 2DIAGNOSTIC, 3, -4.136967358247e-01, 1.797693134862e+308, 2.6559e-01, 1.6220e-03, - 2DIAGNOSTIC, 4, -4.166168035617e-01, 1.797693134862e+308, 2.6720e-01, 1.6141e-03, - 2DIAGNOSTIC, 5, -4.208371556802e-01, 1.797693134862e+308, 2.6881e-01, 1.6079e-03, - 2DIAGNOSTIC, 6, -4.300088058592e-01, 1.797693134862e+308, 2.7039e-01, 1.5788e-03, - 2DIAGNOSTIC, 7, -4.415678180634e-01, 1.797693134862e+308, 2.7231e-01, 1.9219e-03, - 2DIAGNOSTIC, 8, -4.451667274411e-01, 1.797693134862e+308, 2.7420e-01, 1.8849e-03, - 2DIAGNOSTIC, 9, -4.475152531006e-01, 1.797693134862e+308, 2.7588e-01, 1.6890e-03, - 2DIAGNOSTIC, 10, -4.511295266961e-01, 7.468823327982e-03, 2.7790e-01, 2.0120e-03, - 2DIAGNOSTIC, 11, -4.631941864368e-01, 7.256887875179e-03, 2.7991e-01, 2.0120e-03, - 2DIAGNOSTIC, 12, -4.949774623093e-01, 8.245126280923e-03, 2.8249e-01, 2.5811e-03, - 2DIAGNOSTIC, 13, -5.058088776049e-01, 9.008338900206e-03, 2.8537e-01, 2.8820e-03, - 2DIAGNOSTIC, 14, -5.064433477070e-01, 9.016407941505e-03, 2.8759e-01, 2.2178e-03, - 2DIAGNOSTIC, 15, -5.069572570301e-01, 8.424952517096e-03, 2.9043e-01, 2.8419e-03, - 2DIAGNOSTIC, 16, -5.072264192534e-01, 7.502236873199e-03, 2.9239e-01, 1.9610e-03, - 2DIAGNOSTIC, 17, -5.077269659031e-01, 6.431570074510e-03, 2.9462e-01, 2.2302e-03, - 2DIAGNOSTIC, 18, -5.084055479047e-01, 5.043551440566e-03, 2.9719e-01, 2.5690e-03, - 2DIAGNOSTIC, 19, -5.084779956913e-01, 3.445747519348e-03, 2.9945e-01, 2.2631e-03, - 2DIAGNOSTIC, 20, -5.082392276026e-01, 1.813994461627e-03, 3.0141e-01, 1.9541e-03, - 2DIAGNOSTIC, 21, -5.080176512346e-01, 5.043935858712e-04, 3.0333e-01, 1.9231e-03, - 2DIAGNOSTIC, 22, -5.080965856514e-01, 1.464570362143e-04, 3.0530e-01, 1.9650e-03, - 2DIAGNOSTIC, 23, -5.082066694183e-01, 9.509944589563e-05, 3.0728e-01, 1.9791e-03, - 2DIAGNOSTIC, 24, -5.083612823735e-01, 5.908862004768e-05, 3.0924e-01, 1.9670e-03, - 2DIAGNOSTIC, 25, -5.088372349053e-01, 4.481882532965e-05, 3.1155e-01, 2.3060e-03, - 2DIAGNOSTIC, 26, -5.096941065984e-01, 5.331226993187e-05, 3.1338e-01, 1.8330e-03, - 2DIAGNOSTIC, 27, -5.094871934839e-01, 6.186130348517e-05, 3.1988e-01, 6.5010e-03, - 2DIAGNOSTIC, 28, -5.094871422616e-01, 7.874949389541e-05, 3.2180e-01, 1.9140e-03, - 2DIAGNOSTIC, 29, -5.094871831288e-01, 8.882444873760e-05, 3.2367e-01, 1.8778e-03, - 2DIAGNOSTIC, 30, -5.094872522240e-01, 8.508021162484e-05, 3.2537e-01, 1.6961e-03, - 2DIAGNOSTIC, 31, -5.094873690178e-01, 6.917172496266e-05, 3.2706e-01, 1.6940e-03, - 2DIAGNOSTIC, 32, -5.094875663857e-01, 4.945961111683e-05, 3.2872e-01, 1.6549e-03, - 2DIAGNOSTIC, 33, -5.094878997645e-01, 2.868397674429e-05, 3.3092e-01, 2.1989e-03, - 2DIAGNOSTIC, 34, -5.094884624558e-01, 9.143536648520e-06, 3.3325e-01, 2.3289e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.902052744307e-01, 1.797693134862e+308, 5.8369e-01, 2.5045e-01, - 2DIAGNOSTIC, 2, -3.897556567991e-01, 1.797693134862e+308, 5.8599e-01, 2.2969e-03, - 2DIAGNOSTIC, 3, -3.903549875870e-01, 1.797693134862e+308, 5.8827e-01, 2.2779e-03, - 2DIAGNOSTIC, 4, -3.914862976625e-01, 1.797693134862e+308, 5.9046e-01, 2.1892e-03, - 2DIAGNOSTIC, 5, -3.920043266132e-01, 1.797693134862e+308, 5.9261e-01, 2.1520e-03, - 2DIAGNOSTIC, 6, -3.940035564937e-01, 1.797693134862e+308, 5.9476e-01, 2.1501e-03, - 2DIAGNOSTIC, 7, -4.071786264380e-01, 1.797693134862e+308, 5.9685e-01, 2.0869e-03, - 2DIAGNOSTIC, 8, -4.174494547341e-01, 1.797693134862e+308, 5.9931e-01, 2.4641e-03, - 2DIAGNOSTIC, 9, -4.222735666178e-01, 1.797693134862e+308, 6.0142e-01, 2.1040e-03, - 2DIAGNOSTIC, 10, -4.266427055485e-01, 6.471709807753e-03, 6.0416e-01, 2.7449e-03, - 2DIAGNOSTIC, 11, -4.353308128778e-01, 7.205769220254e-03, 6.0679e-01, 2.6340e-03, - 2DIAGNOSTIC, 12, -4.400606460580e-01, 7.386739075098e-03, 6.0995e-01, 3.1590e-03, - 2DIAGNOSTIC, 13, -4.421078598305e-01, 7.003082370339e-03, 6.1275e-01, 2.7952e-03, - 2DIAGNOSTIC, 14, -4.428856107362e-01, 6.149944238927e-03, 6.1495e-01, 2.1970e-03, - 2DIAGNOSTIC, 15, -4.434347584519e-01, 4.918190856715e-03, 6.1833e-01, 3.3851e-03, - 2DIAGNOSTIC, 16, -4.422046940037e-01, 3.420761903828e-03, 6.2082e-01, 2.4929e-03, - 2DIAGNOSTIC, 17, -4.422453261736e-01, 2.315077332364e-03, 6.2329e-01, 2.4700e-03, - 2DIAGNOSTIC, 18, -4.426904021386e-01, 1.528848418220e-03, 6.2577e-01, 2.4750e-03, - 2DIAGNOSTIC, 19, -4.416862856895e-01, 8.245469913735e-04, 6.2825e-01, 2.4822e-03, - 2DIAGNOSTIC, 20, -4.416933625665e-01, 2.607398496765e-04, 6.3074e-01, 2.4900e-03, - 2DIAGNOSTIC, 21, -4.417143068957e-01, 5.062914041551e-06, 6.3292e-01, 2.1782e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.261552719907e-01, 1.797693134862e+308, 9.0965e-01, 2.7674e-01, - 2DIAGNOSTIC, 2, -3.265485458093e-01, 1.797693134862e+308, 9.2236e-01, 1.2708e-02, - 2DIAGNOSTIC, 3, -3.271046246503e-01, 1.797693134862e+308, 9.3496e-01, 1.2598e-02, - 2DIAGNOSTIC, 4, -3.275880386648e-01, 1.797693134862e+308, 9.4755e-01, 1.2591e-02, - 2DIAGNOSTIC, 5, -3.280973204859e-01, 1.797693134862e+308, 9.6022e-01, 1.2668e-02, - 2DIAGNOSTIC, 6, -3.288360631781e-01, 1.797693134862e+308, 9.7458e-01, 1.4362e-02, - 2DIAGNOSTIC, 7, -3.291771045145e-01, 1.797693134862e+308, 9.8970e-01, 1.5115e-02, - 2DIAGNOSTIC, 8, -3.298442049583e-01, 1.797693134862e+308, 1.0022e+00, 1.2522e-02, - 2DIAGNOSTIC, 9, -3.387349269750e-01, 1.797693134862e+308, 1.0159e+00, 1.3732e-02, - 2DIAGNOSTIC, 10, -3.452296384832e-01, 2.796595007762e-03, 1.0286e+00, 1.2629e-02, - 2DIAGNOSTIC, 11, -3.504169159803e-01, 3.763686583653e-03, 1.0433e+00, 1.4709e-02, - 2DIAGNOSTIC, 12, -3.544955712576e-01, 4.542839423485e-03, 1.0585e+00, 1.5183e-02, - 2DIAGNOSTIC, 13, -3.559518131755e-01, 4.917429518670e-03, 1.0730e+00, 1.4483e-02, - 2DIAGNOSTIC, 14, -3.671674231464e-01, 5.476729005637e-03, 1.0869e+00, 1.3948e-02, - 2DIAGNOSTIC, 15, -3.885598821453e-01, 6.628103746306e-03, 1.1021e+00, 1.5207e-02, - 2DIAGNOSTIC, 16, -3.931431536308e-01, 7.260560344090e-03, 1.1234e+00, 2.1336e-02, - 2DIAGNOSTIC, 17, -3.950029996341e-01, 7.269367468146e-03, 1.1368e+00, 1.3371e-02, - 2DIAGNOSTIC, 18, -3.967350925593e-01, 6.724955419801e-03, 1.1502e+00, 1.3393e-02, - 2DIAGNOSTIC, 19, -4.002057066401e-01, 6.134937351295e-03, 1.1661e+00, 1.5935e-02, - 2DIAGNOSTIC, 20, -4.056864235499e-01, 5.497964458979e-03, 1.1817e+00, 1.5549e-02, - 2DIAGNOSTIC, 21, -4.151229148719e-01, 4.961182586535e-03, 1.1947e+00, 1.3040e-02, - 2DIAGNOSTIC, 22, -4.269771775230e-01, 4.592407343138e-03, 1.2111e+00, 1.6391e-02, - 2DIAGNOSTIC, 23, -4.467715269658e-01, 4.538765293402e-03, 1.2320e+00, 2.0840e-02, - 2DIAGNOSTIC, 24, -4.539442577604e-01, 4.627526345905e-03, 1.2464e+00, 1.4406e-02, - 2DIAGNOSTIC, 25, -4.598349345471e-01, 5.106864681264e-03, 1.2592e+00, 1.2804e-02, - 2DIAGNOSTIC, 26, -4.639450245906e-01, 5.316859561919e-03, 1.2716e+00, 1.2451e-02, - 2DIAGNOSTIC, 27, -4.717532281300e-01, 5.271242389396e-03, 1.2873e+00, 1.5659e-02, - 2DIAGNOSTIC, 28, -4.749927406116e-01, 4.857511537780e-03, 1.3010e+00, 1.3719e-02, - 2DIAGNOSTIC, 29, -4.768956381341e-01, 4.159632447590e-03, 1.3139e+00, 1.2853e-02, - 2DIAGNOSTIC, 30, -4.878448773892e-01, 3.529024491486e-03, 1.3263e+00, 1.2465e-02, - 2DIAGNOSTIC, 31, -4.913745169198e-01, 2.911383357611e-03, 1.3480e+00, 2.1717e-02, - 2DIAGNOSTIC, 32, -4.923168068260e-01, 2.343939831385e-03, 1.3606e+00, 1.2557e-02, - 2DIAGNOSTIC, 33, -4.931327829565e-01, 2.043786024429e-03, 1.3735e+00, 1.2888e-02, - 2DIAGNOSTIC, 34, -4.951047765896e-01, 1.762018856517e-03, 1.3859e+00, 1.2463e-02, - 2DIAGNOSTIC, 35, -5.027198276966e-01, 1.599795076734e-03, 1.3992e+00, 1.3206e-02, - 2DIAGNOSTIC, 36, -5.130240975556e-01, 1.567317843737e-03, 1.4153e+00, 1.6154e-02, - 2DIAGNOSTIC, 37, -5.209972693784e-01, 1.681559128936e-03, 1.4311e+00, 1.5798e-02, - 2DIAGNOSTIC, 38, -5.247992251599e-01, 1.758516543200e-03, 1.4435e+00, 1.2358e-02, - 2DIAGNOSTIC, 39, -5.446987341664e-01, 2.040031145194e-03, 1.4579e+00, 1.4465e-02, - 2DIAGNOSTIC, 40, -5.759931003558e-01, 2.808164306971e-03, 1.4704e+00, 1.2439e-02, - 2DIAGNOSTIC, 41, -5.801002028565e-01, 3.370558373886e-03, 1.4884e+00, 1.8083e-02, - 2DIAGNOSTIC, 42, -5.823137715434e-01, 3.635325633683e-03, 1.5057e+00, 1.7292e-02, - 2DIAGNOSTIC, 43, -5.826709040538e-01, 3.565124587999e-03, 1.5192e+00, 1.3441e-02, - 2DIAGNOSTIC, 44, -5.835987829874e-01, 3.198818672672e-03, 1.5350e+00, 1.5841e-02, - 2DIAGNOSTIC, 45, -5.839967071856e-01, 2.655126648469e-03, 1.5472e+00, 1.2179e-02, - 2DIAGNOSTIC, 46, -5.842148188248e-01, 2.036794148753e-03, 1.5594e+00, 1.2213e-02, - 2DIAGNOSTIC, 47, -5.842786213571e-01, 1.376704014399e-03, 1.5738e+00, 1.4361e-02, - 2DIAGNOSTIC, 48, -5.844531249951e-01, 6.722696693306e-04, 1.5886e+00, 1.4775e-02, - 2DIAGNOSTIC, 49, -5.846383804873e-01, 1.888007953692e-04, 1.6054e+00, 1.6845e-02, - 2DIAGNOSTIC, 50, -5.849316874194e-01, 1.069123417402e-04, 1.6201e+00, 1.4738e-02, - 2DIAGNOSTIC, 51, -5.850415835014e-01, 6.989091603508e-05, 1.6333e+00, 1.3202e-02, - 2DIAGNOSTIC, 52, -5.850979099711e-01, 5.523871368930e-05, 1.6479e+00, 1.4593e-02, - 2DIAGNOSTIC, 53, -5.851982165510e-01, 4.120347588239e-05, 1.6625e+00, 1.4603e-02, - 2DIAGNOSTIC, 54, -5.852150755707e-01, 3.454386449946e-05, 1.6766e+00, 1.4077e-02, - 2DIAGNOSTIC, 55, -5.852379695313e-01, 2.955019600284e-05, 1.6887e+00, 1.2141e-02, - 2DIAGNOSTIC, 56, -5.852825156945e-01, 2.488745987319e-05, 1.7026e+00, 1.3802e-02, - 2DIAGNOSTIC, 57, -5.854157510106e-01, 2.020166909163e-05, 1.7291e+00, 2.6583e-02, - 2DIAGNOSTIC, 58, -5.854221783555e-01, 1.567797652632e-05, 1.7429e+00, 1.3717e-02, - 2DIAGNOSTIC, 59, -5.854118634997e-01, 1.163796713534e-05, 1.7545e+00, 1.1668e-02, - 2DIAGNOSTIC, 60, -5.854030879731e-01, 9.557371052234e-06, 1.7660e+00, 1.1505e-02, - 2DIAGNOSTIC, 61, -5.853963204295e-01, 7.701351486297e-06, 1.7795e+00, 1.3520e-02, - 2DIAGNOSTIC, 62, -5.854019198874e-01, 5.787707455997e-06, 1.7917e+00, 1.2190e-02, - 2DIAGNOSTIC, 63, -5.854080244165e-01, 4.447300375677e-06, 1.8054e+00, 1.3645e-02, - 2DIAGNOSTIC, 64, -5.853576817355e-01, 2.500347878163e-06, 1.8191e+00, 1.3746e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.959557982262e-01, 1.797693134862e+308, 2.2432e+00, 4.2403e-01, - 2DIAGNOSTIC, 2, -4.960995599059e-01, 1.797693134862e+308, 2.3299e+00, 8.6785e-02, - 2DIAGNOSTIC, 3, -4.961296470312e-01, 1.797693134862e+308, 2.4177e+00, 8.7731e-02, - 2DIAGNOSTIC, 4, -4.961475055206e-01, 1.797693134862e+308, 2.5191e+00, 1.0142e-01, - 2DIAGNOSTIC, 5, -4.961778143521e-01, 1.797693134862e+308, 2.6065e+00, 8.7457e-02, - 2DIAGNOSTIC, 6, -4.962730367744e-01, 1.797693134862e+308, 2.7056e+00, 9.9095e-02, - 2DIAGNOSTIC, 7, -4.963613055038e-01, 1.797693134862e+308, 2.8021e+00, 9.6480e-02, - 2DIAGNOSTIC, 8, -4.964929188905e-01, 1.797693134862e+308, 2.8972e+00, 9.5123e-02, - 2DIAGNOSTIC, 9, -4.965801966985e-01, 1.797693134862e+308, 2.9922e+00, 9.4978e-02, - 2DIAGNOSTIC, 10, -4.965900640010e-01, 8.477414396024e-05, 3.1042e+00, 1.1199e-01, - 2DIAGNOSTIC, 11, -4.965901392480e-01, 7.360329467750e-05, 3.2603e+00, 1.5607e-01, - 2DIAGNOSTIC, 12, -4.965919241423e-01, 6.485497002338e-05, 3.3752e+00, 1.1489e-01, - 2DIAGNOSTIC, 13, -4.965907181996e-01, 5.304913529690e-05, 3.4756e+00, 1.0040e-01, - 2DIAGNOSTIC, 14, -4.965894855222e-01, 3.900539604565e-05, 3.5630e+00, 8.7393e-02, - 2DIAGNOSTIC, 15, -4.965869814891e-01, 2.454426662826e-05, 3.6481e+00, 8.5099e-02, - 2DIAGNOSTIC, 16, -4.965845440919e-01, 1.317242231913e-05, 3.7582e+00, 1.1018e-01, - 2DIAGNOSTIC, 17, -4.965846730681e-01, 4.999994994231e-06, 3.8398e+00, 8.1576e-02, - 2DIAGNOSTIC, 18, -4.965848932389e-01, 1.562593399465e-06, 3.9412e+00, 1.0137e-01, - 2DIAGNOSTIC, 19, -4.965864794969e-01, 1.175915229613e-06, 4.0335e+00, 9.2291e-02, - 2DIAGNOSTIC, 20, -4.965841628025e-01, 1.090843384656e-06, 4.1211e+00, 8.7572e-02, - 2DIAGNOSTIC, 21, -4.965872457894e-01, 1.148010116733e-06, 4.2259e+00, 1.0484e-01, - 2DIAGNOSTIC, 22, -4.965861142834e-01, 1.248529387425e-06, 4.3302e+00, 1.0434e-01, - 2DIAGNOSTIC, 23, -4.965862820552e-01, 1.332644460318e-06, 4.4352e+00, 1.0493e-01, - 2DIAGNOSTIC, 24, -4.965850636825e-01, 1.357414606683e-06, 4.5403e+00, 1.0517e-01, - 2DIAGNOSTIC, 25, -4.965824450682e-01, 1.262562300673e-06, 4.8861e+00, 3.4572e-01, - 2DIAGNOSTIC, 26, -4.965824450682e-01, 1.123369232477e-06, 5.0477e+00, 1.6164e-01, - 2DIAGNOSTIC, 27, -4.965824450682e-01, 1.005203908229e-06, 5.1498e+00, 1.0206e-01, - Elapsed time (stage 0): 5.3007e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.244183259508e-01, 1.797693134862e+308, 2.0284e-01, 2.0284e-01, - 2DIAGNOSTIC, 2, -8.270167266270e-01, 1.797693134862e+308, 2.0414e-01, 1.3020e-03, - 2DIAGNOSTIC, 3, -8.306570969325e-01, 1.797693134862e+308, 2.0544e-01, 1.3011e-03, - 2DIAGNOSTIC, 4, -8.373566983221e-01, 1.797693134862e+308, 2.0669e-01, 1.2481e-03, - 2DIAGNOSTIC, 5, -8.463123421812e-01, 1.797693134862e+308, 2.0794e-01, 1.2529e-03, - 2DIAGNOSTIC, 6, -8.587099366798e-01, 1.797693134862e+308, 2.0946e-01, 1.5180e-03, - 2DIAGNOSTIC, 7, -8.646767018753e-01, 1.797693134862e+308, 2.1118e-01, 1.7200e-03, - 2DIAGNOSTIC, 8, -8.726846717232e-01, 1.797693134862e+308, 2.1347e-01, 2.2881e-03, - 2DIAGNOSTIC, 9, -8.752206493071e-01, 1.797693134862e+308, 2.1502e-01, 1.5569e-03, - 2DIAGNOSTIC, 10, -8.817378238567e-01, 4.798812332782e-03, 2.1687e-01, 1.8480e-03, - 2DIAGNOSTIC, 11, -8.902007505229e-01, 4.464058981216e-03, 2.1872e-01, 1.8430e-03, - 2DIAGNOSTIC, 12, -8.965432907401e-01, 4.027881378803e-03, 2.2042e-01, 1.6999e-03, - 2DIAGNOSTIC, 13, -9.016537894507e-01, 3.519158406214e-03, 2.2172e-01, 1.3089e-03, - 2DIAGNOSTIC, 14, -9.179804557001e-01, 3.302896289815e-03, 2.2338e-01, 1.6601e-03, - 2DIAGNOSTIC, 15, -9.270875277126e-01, 3.195092157367e-03, 2.2551e-01, 2.1210e-03, - 2DIAGNOSTIC, 16, -9.298074006736e-01, 3.112565313042e-03, 2.2710e-01, 1.5969e-03, - 2DIAGNOSTIC, 17, -9.313500197904e-01, 2.898772152088e-03, 2.2938e-01, 2.2750e-03, - 2DIAGNOSTIC, 18, -9.340040208420e-01, 2.636181752751e-03, 2.3120e-01, 1.8239e-03, - 2DIAGNOSTIC, 19, -9.347072551857e-01, 2.208778367086e-03, 2.3374e-01, 2.5392e-03, - 2DIAGNOSTIC, 20, -9.400415241742e-01, 1.807205102224e-03, 2.3611e-01, 2.3739e-03, - 2DIAGNOSTIC, 21, -9.402407613099e-01, 1.409658076764e-03, 2.3781e-01, 1.6949e-03, - 2DIAGNOSTIC, 22, -9.413663365162e-01, 1.030568983002e-03, 2.3961e-01, 1.7979e-03, - 2DIAGNOSTIC, 23, -9.423852850564e-01, 6.706424356170e-04, 2.4104e-01, 1.4291e-03, - 2DIAGNOSTIC, 24, -9.430550314869e-01, 5.010743560565e-04, 2.4249e-01, 1.4510e-03, - 2DIAGNOSTIC, 25, -9.445548107010e-01, 4.320565147097e-04, 2.4400e-01, 1.5121e-03, - 2DIAGNOSTIC, 26, -9.455373861584e-01, 3.726145056714e-04, 2.4533e-01, 1.3301e-03, - 2DIAGNOSTIC, 27, -9.491942926749e-01, 3.435426017548e-04, 2.4764e-01, 2.3129e-03, - 2DIAGNOSTIC, 28, -9.509127391226e-01, 3.330628689022e-04, 2.5107e-01, 3.4261e-03, - 2DIAGNOSTIC, 29, -9.510463689315e-01, 2.995843248588e-04, 2.5304e-01, 1.9720e-03, - 2DIAGNOSTIC, 30, -9.519876468211e-01, 3.066109840216e-04, 2.5500e-01, 1.9631e-03, - 2DIAGNOSTIC, 31, -9.528927333385e-01, 2.950088137709e-04, 2.5674e-01, 1.7328e-03, - 2DIAGNOSTIC, 32, -9.532762460594e-01, 2.703082056903e-04, 2.5820e-01, 1.4641e-03, - 2DIAGNOSTIC, 33, -9.536981746844e-01, 2.351769414925e-04, 2.5975e-01, 1.5459e-03, - 2DIAGNOSTIC, 34, -9.543359345672e-01, 1.922074794174e-04, 2.6123e-01, 1.4820e-03, - 2DIAGNOSTIC, 35, -9.553363587524e-01, 1.560465349970e-04, 2.6268e-01, 1.4532e-03, - 2DIAGNOSTIC, 36, -9.583430700454e-01, 1.406908229750e-04, 2.6435e-01, 1.6670e-03, - 2DIAGNOSTIC, 37, -9.595004140817e-01, 1.524124456044e-04, 2.6681e-01, 2.4660e-03, - 2DIAGNOSTIC, 38, -9.608638905810e-01, 1.744685478627e-04, 2.6839e-01, 1.5731e-03, - 2DIAGNOSTIC, 39, -9.611867632950e-01, 1.824236995697e-04, 2.6985e-01, 1.4622e-03, - 2DIAGNOSTIC, 40, -9.622139103149e-01, 1.877361589820e-04, 2.7202e-01, 2.1682e-03, - 2DIAGNOSTIC, 41, -9.639180348451e-01, 1.941801913457e-04, 2.7351e-01, 1.4961e-03, - 2DIAGNOSTIC, 42, -9.640902355479e-01, 1.855369241616e-04, 2.7495e-01, 1.4369e-03, - 2DIAGNOSTIC, 43, -9.653348470400e-01, 1.719577021528e-04, 2.7688e-01, 1.9250e-03, - 2DIAGNOSTIC, 44, -9.655213563875e-01, 1.484889270698e-04, 2.7828e-01, 1.4000e-03, - 2DIAGNOSTIC, 45, -9.658930648478e-01, 1.209457296511e-04, 2.8018e-01, 1.9031e-03, - 2DIAGNOSTIC, 46, -9.661760389267e-01, 1.049178985247e-04, 2.8253e-01, 2.3460e-03, - 2DIAGNOSTIC, 47, -9.656898099274e-01, 8.380518345353e-05, 2.8456e-01, 2.0368e-03, - 2DIAGNOSTIC, 48, -9.660813677255e-01, 6.707581563948e-05, 2.8635e-01, 1.7891e-03, - 2DIAGNOSTIC, 49, -9.661850380662e-01, 4.719623134730e-05, 2.8792e-01, 1.5650e-03, - 2DIAGNOSTIC, 50, -9.665349669246e-01, 3.187236238503e-05, 2.8948e-01, 1.5590e-03, - 2DIAGNOSTIC, 51, -9.673279412790e-01, 2.920107286548e-05, 2.9136e-01, 1.8861e-03, - 2DIAGNOSTIC, 52, -9.668916587807e-01, 2.212122931902e-05, 2.9315e-01, 1.7879e-03, - 2DIAGNOSTIC, 53, -9.669728272151e-01, 2.105164525153e-05, 2.9476e-01, 1.6110e-03, - 2DIAGNOSTIC, 54, -9.671564750358e-01, 2.007455663655e-05, 2.9620e-01, 1.4439e-03, - 2DIAGNOSTIC, 55, -9.672974565733e-01, 1.995316225891e-05, 2.9766e-01, 1.4589e-03, - 2DIAGNOSTIC, 56, -9.673539446110e-01, 1.986321656996e-05, 2.9901e-01, 1.3430e-03, - 2DIAGNOSTIC, 57, -9.673894684933e-01, 1.553217216952e-05, 3.0052e-01, 1.5099e-03, - 2DIAGNOSTIC, 58, -9.674767167432e-01, 1.251499162004e-05, 3.0196e-01, 1.4460e-03, - 2DIAGNOSTIC, 59, -9.682808507203e-01, 1.307124607152e-05, 3.0452e-01, 2.5539e-03, - 2DIAGNOSTIC, 60, -9.682972803566e-01, 1.400193844266e-05, 3.0584e-01, 1.3220e-03, - 2DIAGNOSTIC, 61, -9.683003655932e-01, 1.770017537694e-05, 3.0721e-01, 1.3740e-03, - 2DIAGNOSTIC, 62, -9.683203900345e-01, 1.765527467554e-05, 3.0875e-01, 1.5359e-03, - 2DIAGNOSTIC, 63, -9.683468220750e-01, 1.644635571857e-05, 3.1050e-01, 1.7550e-03, - 2DIAGNOSTIC, 64, -9.683502711260e-01, 1.454937134306e-05, 3.1196e-01, 1.4548e-03, - 2DIAGNOSTIC, 65, -9.683574845972e-01, 1.204109189719e-05, 3.1398e-01, 2.0261e-03, - 2DIAGNOSTIC, 66, -9.683575681164e-01, 8.821107459093e-06, 3.1531e-01, 1.3239e-03, - 2DIAGNOSTIC, 67, -9.683576368917e-01, 5.091974314322e-06, 3.1660e-01, 1.2910e-03, - 2DIAGNOSTIC, 68, -9.683578682045e-01, 1.318741819901e-06, 3.1799e-01, 1.3900e-03, - 2DIAGNOSTIC, 69, -9.683586586926e-01, 1.106836821411e-06, 3.1933e-01, 1.3390e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.327090328845e-01, 1.797693134862e+308, 5.3444e-01, 2.1511e-01, - 2DIAGNOSTIC, 2, -8.327519715349e-01, 1.797693134862e+308, 5.3647e-01, 2.0270e-03, - 2DIAGNOSTIC, 3, -8.348348052251e-01, 1.797693134862e+308, 5.3842e-01, 1.9529e-03, - 2DIAGNOSTIC, 4, -8.364569008732e-01, 1.797693134862e+308, 5.4035e-01, 1.9362e-03, - 2DIAGNOSTIC, 5, -8.403733825483e-01, 1.797693134862e+308, 5.4266e-01, 2.3060e-03, - 2DIAGNOSTIC, 6, -8.467918203092e-01, 1.797693134862e+308, 5.4507e-01, 2.4061e-03, - 2DIAGNOSTIC, 7, -8.469170401446e-01, 1.797693134862e+308, 5.4710e-01, 2.0311e-03, - 2DIAGNOSTIC, 8, -8.509103442272e-01, 1.797693134862e+308, 5.4916e-01, 2.0640e-03, - 2DIAGNOSTIC, 9, -8.542005057155e-01, 1.797693134862e+308, 5.5149e-01, 2.3258e-03, - 2DIAGNOSTIC, 10, -8.568545283816e-01, 2.029190573732e-03, 5.5595e-01, 4.4630e-03, - 2DIAGNOSTIC, 11, -8.571764359024e-01, 1.870880981771e-03, 5.5818e-01, 2.2340e-03, - 2DIAGNOSTIC, 12, -8.575928157317e-01, 1.586484276010e-03, 5.6101e-01, 2.8279e-03, - 2DIAGNOSTIC, 13, -8.578686134984e-01, 1.266004499806e-03, 5.6425e-01, 3.2349e-03, - 2DIAGNOSTIC, 14, -8.580958192635e-01, 9.188458716614e-04, 5.6745e-01, 3.2051e-03, - 2DIAGNOSTIC, 15, -8.586426486409e-01, 6.307547250376e-04, 5.7046e-01, 3.0041e-03, - 2DIAGNOSTIC, 16, -8.595063150570e-01, 4.753810116755e-04, 5.7287e-01, 2.4149e-03, - 2DIAGNOSTIC, 17, -8.608328039672e-01, 3.224077250983e-04, 5.7525e-01, 2.3792e-03, - 2DIAGNOSTIC, 18, -8.620830228842e-01, 2.528788447605e-04, 5.7767e-01, 2.4199e-03, - 2DIAGNOSTIC, 19, -8.641503344712e-01, 2.602915062057e-04, 5.8008e-01, 2.4090e-03, - 2DIAGNOSTIC, 20, -8.701042847467e-01, 3.858419527584e-04, 5.8351e-01, 3.4339e-03, - 2DIAGNOSTIC, 21, -8.710265495573e-01, 4.807503127715e-04, 5.8623e-01, 2.7130e-03, - 2DIAGNOSTIC, 22, -8.710497001726e-01, 5.295997721995e-04, 5.9146e-01, 5.2369e-03, - 2DIAGNOSTIC, 23, -8.711871913021e-01, 5.319926208177e-04, 5.9407e-01, 2.6090e-03, - 2DIAGNOSTIC, 24, -8.708676409531e-01, 4.827407880474e-04, 5.9641e-01, 2.3360e-03, - 2DIAGNOSTIC, 25, -8.709701231508e-01, 3.997714409542e-04, 5.9875e-01, 2.3448e-03, - 2DIAGNOSTIC, 26, -8.711286313233e-01, 2.984806504923e-04, 6.0139e-01, 2.6410e-03, - 2DIAGNOSTIC, 27, -8.711335575993e-01, 1.940938009156e-04, 6.0373e-01, 2.3320e-03, - 2DIAGNOSTIC, 28, -8.712031601915e-01, 9.507595881472e-05, 6.0637e-01, 2.6460e-03, - 2DIAGNOSTIC, 29, -8.714545208109e-01, 1.885490559200e-05, 6.0898e-01, 2.6112e-03, - 2DIAGNOSTIC, 30, -8.713059583119e-01, 9.845682595017e-06, 6.1137e-01, 2.3830e-03, - 2DIAGNOSTIC, 31, -8.719358757419e-01, 1.717876817205e-05, 6.1377e-01, 2.4040e-03, - 2DIAGNOSTIC, 32, -8.721795239199e-01, 2.504053034873e-05, 6.1654e-01, 2.7699e-03, - 2DIAGNOSTIC, 33, -8.723460615784e-01, 3.327692566821e-05, 6.1893e-01, 2.3921e-03, - 2DIAGNOSTIC, 34, -8.722166379645e-01, 3.362735316809e-05, 6.2134e-01, 2.4071e-03, - 2DIAGNOSTIC, 35, -8.727828006329e-01, 3.721588262526e-05, 6.2370e-01, 2.3651e-03, - 2DIAGNOSTIC, 36, -8.748760854925e-01, 5.760776633594e-05, 6.2636e-01, 2.6519e-03, - 2DIAGNOSTIC, 37, -8.753602774206e-01, 7.527887215285e-05, 6.2897e-01, 2.6159e-03, - 2DIAGNOSTIC, 38, -8.762667884121e-01, 9.355452773500e-05, 6.3345e-01, 4.4751e-03, - 2DIAGNOSTIC, 39, -8.762156302741e-01, 1.039863230225e-04, 6.3615e-01, 2.7070e-03, - 2DIAGNOSTIC, 40, -8.761033739789e-01, 1.018303198418e-04, 6.3858e-01, 2.4221e-03, - 2DIAGNOSTIC, 41, -8.757731296994e-01, 9.232072804585e-05, 6.4094e-01, 2.3592e-03, - 2DIAGNOSTIC, 42, -8.759048948061e-01, 7.740453050807e-05, 6.4328e-01, 2.3429e-03, - 2DIAGNOSTIC, 43, -8.758385722079e-01, 5.677982572046e-05, 6.4659e-01, 3.3100e-03, - 2DIAGNOSTIC, 44, -8.758948085409e-01, 3.130063660724e-05, 6.4948e-01, 2.8920e-03, - 2DIAGNOSTIC, 45, -8.757561887309e-01, 6.907655075675e-06, 6.5227e-01, 2.7850e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.208459929273e-01, 1.797693134862e+308, 8.9513e-01, 2.4286e-01, - 2DIAGNOSTIC, 2, -7.221432781480e-01, 1.797693134862e+308, 9.0875e-01, 1.3621e-02, - 2DIAGNOSTIC, 3, -7.235020238064e-01, 1.797693134862e+308, 9.2222e-01, 1.3474e-02, - 2DIAGNOSTIC, 4, -7.261726657308e-01, 1.797693134862e+308, 9.3597e-01, 1.3748e-02, - 2DIAGNOSTIC, 5, -7.289309282239e-01, 1.797693134862e+308, 9.4982e-01, 1.3845e-02, - 2DIAGNOSTIC, 6, -7.314097372263e-01, 1.797693134862e+308, 9.6551e-01, 1.5689e-02, - 2DIAGNOSTIC, 7, -7.364926096459e-01, 1.797693134862e+308, 9.9181e-01, 2.6303e-02, - 2DIAGNOSTIC, 8, -7.369712582456e-01, 1.797693134862e+308, 1.0057e+00, 1.3921e-02, - 2DIAGNOSTIC, 9, -7.374164304852e-01, 1.797693134862e+308, 1.0197e+00, 1.3926e-02, - 2DIAGNOSTIC, 10, -7.379645686053e-01, 1.760383169890e-03, 1.0339e+00, 1.4231e-02, - 2DIAGNOSTIC, 11, -7.387730766802e-01, 1.478707779883e-03, 1.0481e+00, 1.4164e-02, - 2DIAGNOSTIC, 12, -7.391720672205e-01, 1.164891808248e-03, 1.0643e+00, 1.6213e-02, - 2DIAGNOSTIC, 13, -7.393654227522e-01, 8.405508621919e-04, 1.0785e+00, 1.4277e-02, - 2DIAGNOSTIC, 14, -7.397284161859e-01, 5.718826623312e-04, 1.0968e+00, 1.8261e-02, - 2DIAGNOSTIC, 15, -7.398353327975e-01, 3.609681973716e-04, 1.1105e+00, 1.3663e-02, - 2DIAGNOSTIC, 16, -7.404235863018e-01, 2.144782677164e-04, 1.1278e+00, 1.7333e-02, - 2DIAGNOSTIC, 17, -7.409488130350e-01, 1.930867268014e-04, 1.1432e+00, 1.5446e-02, - 2DIAGNOSTIC, 18, -7.410148932937e-01, 1.680340701591e-04, 1.1566e+00, 1.3383e-02, - 2DIAGNOSTIC, 19, -7.410759700518e-01, 1.406949834951e-04, 1.1723e+00, 1.5635e-02, - 2DIAGNOSTIC, 20, -7.411143192639e-01, 1.142851831149e-04, 1.1866e+00, 1.4320e-02, - 2DIAGNOSTIC, 21, -7.411542843136e-01, 9.525840400828e-05, 1.2020e+00, 1.5449e-02, - 2DIAGNOSTIC, 22, -7.412874404533e-01, 7.838588654144e-05, 1.2174e+00, 1.5339e-02, - 2DIAGNOSTIC, 23, -7.412919084232e-01, 5.902420999783e-05, 1.2321e+00, 1.4730e-02, - 2DIAGNOSTIC, 24, -7.413106619006e-01, 4.224109832558e-05, 1.2451e+00, 1.2996e-02, - 2DIAGNOSTIC, 25, -7.413706779351e-01, 2.541061216751e-05, 1.2603e+00, 1.5187e-02, - 2DIAGNOSTIC, 26, -7.414577039256e-01, 1.739805587459e-05, 1.2755e+00, 1.5179e-02, - 2DIAGNOSTIC, 27, -7.415961649598e-01, 1.787950018881e-05, 1.2969e+00, 2.1484e-02, - 2DIAGNOSTIC, 28, -7.416213437663e-01, 1.796473264411e-05, 1.3127e+00, 1.5711e-02, - 2DIAGNOSTIC, 29, -7.416066678881e-01, 1.711736965121e-05, 1.3265e+00, 1.3836e-02, - 2DIAGNOSTIC, 30, -7.415947307976e-01, 1.517937061473e-05, 1.3439e+00, 1.7451e-02, - 2DIAGNOSTIC, 31, -7.415786764874e-01, 1.226535617863e-05, 1.3586e+00, 1.4668e-02, - 2DIAGNOSTIC, 32, -7.415631592563e-01, 9.867555568831e-06, 1.3715e+00, 1.2936e-02, - 2DIAGNOSTIC, 33, -7.415498058652e-01, 6.680116199788e-06, 1.3848e+00, 1.3288e-02, - 2DIAGNOSTIC, 34, -7.415400045664e-01, 3.259922152325e-06, 1.3986e+00, 1.3732e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.188397268593e-01, 1.797693134862e+308, 1.8306e+00, 4.3205e-01, - 2DIAGNOSTIC, 2, -6.197544781848e-01, 1.797693134862e+308, 1.9304e+00, 9.9805e-02, - 2DIAGNOSTIC, 3, -6.206029263415e-01, 1.797693134862e+308, 2.0280e+00, 9.7575e-02, - 2DIAGNOSTIC, 4, -6.212482870153e-01, 1.797693134862e+308, 2.1263e+00, 9.8334e-02, - 2DIAGNOSTIC, 5, -6.215581198528e-01, 1.797693134862e+308, 2.2243e+00, 9.7975e-02, - 2DIAGNOSTIC, 6, -6.217835618255e-01, 1.797693134862e+308, 2.3821e+00, 1.5782e-01, - 2DIAGNOSTIC, 7, -6.218656610785e-01, 1.797693134862e+308, 2.4779e+00, 9.5773e-02, - 2DIAGNOSTIC, 8, -6.218999654766e-01, 1.797693134862e+308, 2.5753e+00, 9.7390e-02, - 2DIAGNOSTIC, 9, -6.220036973840e-01, 1.797693134862e+308, 2.7450e+00, 1.6969e-01, - 2DIAGNOSTIC, 10, -6.220233351333e-01, 2.953116160204e-04, 2.8873e+00, 1.4235e-01, - 2DIAGNOSTIC, 11, -6.220219062201e-01, 1.780639566306e-04, 2.9830e+00, 9.5624e-02, - 2DIAGNOSTIC, 12, -6.220132420073e-01, 9.876267095200e-05, 3.0807e+00, 9.7713e-02, - 2DIAGNOSTIC, 13, -6.220125222606e-01, 5.240872460797e-05, 3.1871e+00, 1.0648e-01, - 2DIAGNOSTIC, 14, -6.220137716298e-01, 2.904511341555e-05, 3.2945e+00, 1.0736e-01, - 2DIAGNOSTIC, 15, -6.220147061135e-01, 1.565334264712e-05, 3.4024e+00, 1.0790e-01, - 2DIAGNOSTIC, 16, -6.220119103749e-01, 9.051680623651e-06, 3.5124e+00, 1.0996e-01, - 2DIAGNOSTIC, 17, -6.220130641124e-01, 4.839620279973e-06, 3.6183e+00, 1.0591e-01, - 2DIAGNOSTIC, 18, -6.220120330136e-01, 1.596673511947e-06, 3.7106e+00, 9.2301e-02, - 2DIAGNOSTIC, 19, -6.220096410666e-01, 1.132149234459e-06, 3.8234e+00, 1.1282e-01, - 2DIAGNOSTIC, 20, -6.220073910760e-01, 1.161869549571e-06, 3.9371e+00, 1.1369e-01, - 2DIAGNOSTIC, 21, -6.220069743813e-01, 1.195532320322e-06, 4.0493e+00, 1.1222e-01, - 2DIAGNOSTIC, 22, -6.220065398952e-01, 1.066767769599e-06, 4.1886e+00, 1.3934e-01, - Elapsed time (stage 1): 4.3256e+00 - - -Total elapsed time: 9.6293e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:11:45 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:11:45 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55d64b19e4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.485, 53.4596, -131.8] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d64b1a3fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2e789b1010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55d64b19f850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.485, 53.4596, -131.8] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d64b19cf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2e752f2010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55d64b1b6b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.485, 53.4596, -131.8] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d64b1a3550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2e71c33010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55d64b1bbd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.485, 53.4596, -131.8] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d64b1b9c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2e6e574010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55d64b1bdf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.485, 53.4596, -131.8] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d64b1bc3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2e6aeb5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55d64b1be540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.485, 53.4596, -131.8] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d64b1be4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2e677f6010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.657367000422e-01, 1.797693134862e+308, 1.9804e-01, 1.9804e-01, - 2DIAGNOSTIC, 2, -6.691350523495e-01, 1.797693134862e+308, 2.0011e-01, 2.0640e-03, - 2DIAGNOSTIC, 3, -6.742343601930e-01, 1.797693134862e+308, 2.0199e-01, 1.8890e-03, - 2DIAGNOSTIC, 4, -6.814174378058e-01, 1.797693134862e+308, 2.0395e-01, 1.9541e-03, - 2DIAGNOSTIC, 5, -6.894898805306e-01, 1.797693134862e+308, 2.0591e-01, 1.9581e-03, - 2DIAGNOSTIC, 6, -7.023431505112e-01, 1.797693134862e+308, 2.0822e-01, 2.3098e-03, - 2DIAGNOSTIC, 7, -7.046547861788e-01, 1.797693134862e+308, 2.1039e-01, 2.1741e-03, - 2DIAGNOSTIC, 8, -7.049060899066e-01, 1.797693134862e+308, 2.1229e-01, 1.8950e-03, - 2DIAGNOSTIC, 9, -7.050002268796e-01, 1.797693134862e+308, 2.1429e-01, 2.0061e-03, - 2DIAGNOSTIC, 10, -7.052451828762e-01, 4.341098367120e-03, 2.1658e-01, 2.2881e-03, - 2DIAGNOSTIC, 11, -7.057164948561e-01, 3.283229273571e-03, 2.1870e-01, 2.1219e-03, - 2DIAGNOSTIC, 12, -7.061420058424e-01, 2.241080236399e-03, 2.2187e-01, 3.1679e-03, - 2DIAGNOSTIC, 13, -7.062227240088e-01, 1.326179014229e-03, 2.2399e-01, 2.1219e-03, - 2DIAGNOSTIC, 14, -7.062821121562e-01, 6.347552956106e-04, 2.2637e-01, 2.3758e-03, - 2DIAGNOSTIC, 15, -7.064018162909e-01, 1.932682037787e-04, 2.2891e-01, 2.5411e-03, - 2DIAGNOSTIC, 16, -7.064156085133e-01, 1.166807570091e-04, 2.3141e-01, 2.4991e-03, - 2DIAGNOSTIC, 17, -7.064308681404e-01, 9.428546869417e-05, 2.3333e-01, 1.9231e-03, - 2DIAGNOSTIC, 18, -7.064417582083e-01, 7.196489618248e-05, 2.3531e-01, 1.9782e-03, - 2DIAGNOSTIC, 19, -7.064546809138e-01, 4.790375002119e-05, 2.3725e-01, 1.9391e-03, - 2DIAGNOSTIC, 20, -7.064711201430e-01, 2.711505284472e-05, 2.3993e-01, 2.6779e-03, - 2DIAGNOSTIC, 21, -7.064750452461e-01, 1.494391613790e-05, 2.4183e-01, 1.9062e-03, - 2DIAGNOSTIC, 22, -7.064757995956e-01, 1.052299299743e-05, 2.4376e-01, 1.9231e-03, - 2DIAGNOSTIC, 23, -7.064762622966e-01, 7.076890111167e-06, 2.4567e-01, 1.9181e-03, - 2DIAGNOSTIC, 24, -7.064768185076e-01, 4.347721595868e-06, 2.4785e-01, 2.1760e-03, - 2DIAGNOSTIC, 25, -7.064774602095e-01, 3.505177273891e-06, 2.5101e-01, 3.1581e-03, - 2DIAGNOSTIC, 26, -7.064775958304e-01, 2.733078983116e-06, 2.5344e-01, 2.4288e-03, - 2DIAGNOSTIC, 27, -7.064776000634e-01, 2.108400701743e-06, 2.5560e-01, 2.1601e-03, - 2DIAGNOSTIC, 28, -7.064776023936e-01, 1.598193776785e-06, 2.5774e-01, 2.1451e-03, - 2DIAGNOSTIC, 29, -7.064776048167e-01, 1.255557368102e-06, 2.5973e-01, 1.9841e-03, - 2DIAGNOSTIC, 30, -7.064776101040e-01, 1.142545776732e-06, 2.6165e-01, 1.9212e-03, - 2DIAGNOSTIC, 31, -7.064776320003e-01, 1.081338670335e-06, 2.6371e-01, 2.0599e-03, - 2DIAGNOSTIC, 32, -7.064777029060e-01, 1.029975874832e-06, 2.6575e-01, 2.0461e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.833790810336e-01, 1.797693134862e+308, 5.0034e-01, 2.3458e-01, - 2DIAGNOSTIC, 2, -5.842681506325e-01, 1.797693134862e+308, 5.1402e-01, 1.3681e-02, - 2DIAGNOSTIC, 3, -5.850910709740e-01, 1.797693134862e+308, 5.2766e-01, 1.3646e-02, - 2DIAGNOSTIC, 4, -5.858621178930e-01, 1.797693134862e+308, 5.4309e-01, 1.5429e-02, - 2DIAGNOSTIC, 5, -5.861248539298e-01, 1.797693134862e+308, 5.5684e-01, 1.3753e-02, - 2DIAGNOSTIC, 6, -5.862846932074e-01, 1.797693134862e+308, 5.7259e-01, 1.5745e-02, - 2DIAGNOSTIC, 7, -5.865555091532e-01, 1.797693134862e+308, 5.9889e-01, 2.6299e-02, - 2DIAGNOSTIC, 8, -5.865419819320e-01, 1.797693134862e+308, 6.1440e-01, 1.5510e-02, - 2DIAGNOSTIC, 9, -5.865922064083e-01, 1.797693134862e+308, 6.2791e-01, 1.3513e-02, - 2DIAGNOSTIC, 10, -5.866341557328e-01, 3.260578326812e-04, 6.4530e-01, 1.7384e-02, - 2DIAGNOSTIC, 11, -5.866464030822e-01, 2.004106521991e-04, 6.6650e-01, 2.1203e-02, - 2DIAGNOSTIC, 12, -5.866365429268e-01, 1.129933767125e-04, 6.8259e-01, 1.6096e-02, - 2DIAGNOSTIC, 13, -5.866261460426e-01, 5.879105182215e-05, 6.9705e-01, 1.4458e-02, - 2DIAGNOSTIC, 14, -5.866042339219e-01, 3.311489971800e-05, 7.1290e-01, 1.5846e-02, - 2DIAGNOSTIC, 15, -5.866093802713e-01, 1.664210229520e-05, 7.2657e-01, 1.3667e-02, - 2DIAGNOSTIC, 16, -5.865902716078e-01, 4.921360151816e-06, 7.4236e-01, 1.5797e-02, - 2DIAGNOSTIC, 17, -5.865978995957e-01, 2.312949127427e-06, 7.5819e-01, 1.5824e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.936242264544e-01, 1.797693134862e+308, 1.1415e+00, 3.8330e-01, - 2DIAGNOSTIC, 2, -4.941161149754e-01, 1.797693134862e+308, 1.2387e+00, 9.7212e-02, - 2DIAGNOSTIC, 3, -4.944380430544e-01, 1.797693134862e+308, 1.3373e+00, 9.8583e-02, - 2DIAGNOSTIC, 4, -4.945504965177e-01, 1.797693134862e+308, 1.4410e+00, 1.0371e-01, - 2DIAGNOSTIC, 5, -4.946080470907e-01, 1.797693134862e+308, 1.5393e+00, 9.8341e-02, - 2DIAGNOSTIC, 6, -4.946920380236e-01, 1.797693134862e+308, 1.6723e+00, 1.3296e-01, - 2DIAGNOSTIC, 7, -4.947049825021e-01, 1.797693134862e+308, 1.7681e+00, 9.5844e-02, - 2DIAGNOSTIC, 8, -4.947149391180e-01, 1.797693134862e+308, 1.8651e+00, 9.6911e-02, - 2DIAGNOSTIC, 9, -4.947386211067e-01, 1.797693134862e+308, 1.9590e+00, 9.3905e-02, - 2DIAGNOSTIC, 10, -4.948588114365e-01, 1.215083930011e-04, 2.0666e+00, 1.0764e-01, - 2DIAGNOSTIC, 11, -4.949467253184e-01, 7.511028801209e-05, 2.3442e+00, 2.7764e-01, - 2DIAGNOSTIC, 12, -4.949464771543e-01, 5.312745950423e-05, 2.4503e+00, 1.0608e-01, - 2DIAGNOSTIC, 13, -4.949452979144e-01, 4.421820001908e-05, 2.5565e+00, 1.0617e-01, - 2DIAGNOSTIC, 14, -4.949429790914e-01, 3.731504308715e-05, 2.6644e+00, 1.0786e-01, - 2DIAGNOSTIC, 15, -4.949454790869e-01, 3.026212173735e-05, 2.7850e+00, 1.2068e-01, - 2DIAGNOSTIC, 16, -4.949436703738e-01, 2.439315049564e-05, 2.8914e+00, 1.0635e-01, - 2DIAGNOSTIC, 17, -4.949417329100e-01, 1.758139346749e-05, 3.0007e+00, 1.0927e-01, - 2DIAGNOSTIC, 18, -4.949414979014e-01, 1.045962447228e-05, 3.1098e+00, 1.0910e-01, - 2DIAGNOSTIC, 19, -4.949411066276e-01, 3.914036251697e-06, 3.2055e+00, 9.5744e-02, - 2DIAGNOSTIC, 20, -4.949413564648e-01, 1.200280283588e-06, 3.3206e+00, 1.1506e-01, - 2DIAGNOSTIC, 21, -4.949393970564e-01, 1.131971996277e-06, 3.4325e+00, 1.1189e-01, - 2DIAGNOSTIC, 22, -4.949393615749e-01, 1.101915027855e-06, 3.5307e+00, 9.8275e-02, - 2DIAGNOSTIC, 23, -4.949401525477e-01, 1.098544643398e-06, 3.6395e+00, 1.0879e-01, - 2DIAGNOSTIC, 24, -4.949405520281e-01, 1.072078447420e-06, 3.7346e+00, 9.5112e-02, - 2DIAGNOSTIC, 25, -4.949405357633e-01, 1.129250358417e-06, 3.8556e+00, 1.2094e-01, - 2DIAGNOSTIC, 26, -4.949405059358e-01, 1.157046323239e-06, 3.9624e+00, 1.0680e-01, - 2DIAGNOSTIC, 27, -4.949371948514e-01, 1.077807031062e-06, 4.0688e+00, 1.0640e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.283505419044e-01, 1.797693134862e+308, 5.2974e+00, 1.2286e+00, - 2DIAGNOSTIC, 2, -4.283987009717e-01, 1.797693134862e+308, 5.8758e+00, 5.7843e-01, - 2DIAGNOSTIC, 3, -4.284390826960e-01, 1.797693134862e+308, 7.1758e+00, 1.3000e+00, - 2DIAGNOSTIC, 4, -4.284392997265e-01, 1.797693134862e+308, 7.8661e+00, 6.9029e-01, - 2DIAGNOSTIC, 5, -4.284392279375e-01, 1.797693134862e+308, 8.4934e+00, 6.2734e-01, - 2DIAGNOSTIC, 6, -4.284391295595e-01, 1.797693134862e+308, 9.0629e+00, 5.6947e-01, - 2DIAGNOSTIC, 7, -4.284390642567e-01, 1.797693134862e+308, 9.6328e+00, 5.6990e-01, - 2DIAGNOSTIC, 8, -4.284389103224e-01, 1.797693134862e+308, 1.0264e+01, 6.3143e-01, - 2DIAGNOSTIC, 9, -4.284386098162e-01, 1.797693134862e+308, 1.0912e+01, 6.4736e-01, - 2DIAGNOSTIC, 10, -4.284385860857e-01, 1.131797723011e-05, 1.1530e+01, 6.1871e-01, - 2DIAGNOSTIC, 11, -4.284384010082e-01, 5.221123686033e-06, 1.2091e+01, 5.6106e-01, - 2DIAGNOSTIC, 12, -4.284382917313e-01, 2.524033823559e-06, 1.2739e+01, 6.4721e-01, - 2DIAGNOSTIC, 13, -4.284384279187e-01, 2.320721749577e-06, 1.3378e+01, 6.3954e-01, - 2DIAGNOSTIC, 14, -4.284382712711e-01, 2.160656285444e-06, 1.4001e+01, 6.2313e-01, - 2DIAGNOSTIC, 15, -4.284380660029e-01, 2.020131969233e-06, 1.4671e+01, 6.6993e-01, - 2DIAGNOSTIC, 16, -4.284379674150e-01, 1.898434508804e-06, 1.5471e+01, 8.0033e-01, - 2DIAGNOSTIC, 17, -4.284378370048e-01, 1.791686247268e-06, 1.6109e+01, 6.3783e-01, - 2DIAGNOSTIC, 18, -4.284377023243e-01, 1.693626901500e-06, 1.6731e+01, 6.2166e-01, - 2DIAGNOSTIC, 19, -4.284375662507e-01, 1.597477435097e-06, 1.7295e+01, 5.6368e-01, - 2DIAGNOSTIC, 20, -4.284374374077e-01, 1.513372222192e-06, 1.7871e+01, 5.7621e-01, - 2DIAGNOSTIC, 21, -4.284374672865e-01, 1.439718916176e-06, 1.8415e+01, 5.4444e-01, - 2DIAGNOSTIC, 22, -4.284373710807e-01, 1.373251341842e-06, 1.9039e+01, 6.2346e-01, - 2DIAGNOSTIC, 23, -4.284372844191e-01, 1.320926835816e-06, 1.9593e+01, 5.5435e-01, - 2DIAGNOSTIC, 24, -4.284373849314e-01, 1.277446729953e-06, 2.0174e+01, 5.8048e-01, - 2DIAGNOSTIC, 25, -4.284375539445e-01, 1.240886001466e-06, 2.0750e+01, 5.7607e-01, - 2DIAGNOSTIC, 26, -4.284379832024e-01, 1.218416515798e-06, 2.1508e+01, 7.5846e-01, - 2DIAGNOSTIC, 27, -4.284376390657e-01, 1.186265403900e-06, 2.2122e+01, 6.1351e-01, - 2DIAGNOSTIC, 28, -4.284377093628e-01, 1.154642890216e-06, 2.2740e+01, 6.1849e-01, - 2DIAGNOSTIC, 29, -4.284374782253e-01, 1.115078675264e-06, 2.3366e+01, 6.2615e-01, - 2DIAGNOSTIC, 30, -4.284374202914e-01, 1.072161398039e-06, 2.3980e+01, 6.1411e-01, - 2DIAGNOSTIC, 31, -4.284373618020e-01, 1.030213197341e-06, 2.4601e+01, 6.2019e-01, - Elapsed time (stage 0): 2.4962e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.984900647339e-01, 1.797693134862e+308, 1.8102e-01, 1.8102e-01, - 2DIAGNOSTIC, 2, -7.002721204542e-01, 1.797693134862e+308, 1.8318e-01, 2.1601e-03, - 2DIAGNOSTIC, 3, -7.029350209513e-01, 1.797693134862e+308, 1.8528e-01, 2.1000e-03, - 2DIAGNOSTIC, 4, -7.063906415284e-01, 1.797693134862e+308, 1.8736e-01, 2.0800e-03, - 2DIAGNOSTIC, 5, -7.093549404848e-01, 1.797693134862e+308, 1.8949e-01, 2.1310e-03, - 2DIAGNOSTIC, 6, -7.113265595234e-01, 1.797693134862e+308, 1.9157e-01, 2.0821e-03, - 2DIAGNOSTIC, 7, -7.123326946473e-01, 1.797693134862e+308, 1.9356e-01, 1.9932e-03, - 2DIAGNOSTIC, 8, -7.125623986804e-01, 1.797693134862e+308, 1.9582e-01, 2.2552e-03, - 2DIAGNOSTIC, 9, -7.132376043209e-01, 1.797693134862e+308, 1.9804e-01, 2.2211e-03, - 2DIAGNOSTIC, 10, -7.147621848907e-01, 1.506498682723e-03, 2.0125e-01, 3.2160e-03, - 2DIAGNOSTIC, 11, -7.146326881231e-01, 1.138957464272e-03, 2.0394e-01, 2.6820e-03, - 2DIAGNOSTIC, 12, -7.145296453152e-01, 7.881415353442e-04, 2.0627e-01, 2.3391e-03, - 2DIAGNOSTIC, 13, -7.144290939509e-01, 4.992665016497e-04, 2.0837e-01, 2.0940e-03, - 2DIAGNOSTIC, 14, -7.140652903699e-01, 2.934230376238e-04, 2.1043e-01, 2.0602e-03, - 2DIAGNOSTIC, 15, -7.140144706060e-01, 1.647062657851e-04, 2.1278e-01, 2.3520e-03, - 2DIAGNOSTIC, 16, -7.140947328836e-01, 8.798732458896e-05, 2.1503e-01, 2.2490e-03, - 2DIAGNOSTIC, 17, -7.140814551156e-01, 3.625497700978e-05, 2.1758e-01, 2.5530e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.819577686542e-01, 1.797693134862e+308, 4.2769e-01, 2.1011e-01, - 2DIAGNOSTIC, 2, -5.831731912858e-01, 1.797693134862e+308, 4.4136e-01, 1.3666e-02, - 2DIAGNOSTIC, 3, -5.847293068253e-01, 1.797693134862e+308, 4.5510e-01, 1.3746e-02, - 2DIAGNOSTIC, 4, -5.862609439464e-01, 1.797693134862e+308, 4.6881e-01, 1.3705e-02, - 2DIAGNOSTIC, 5, -5.876748288847e-01, 1.797693134862e+308, 4.8251e-01, 1.3705e-02, - 2DIAGNOSTIC, 6, -5.886832202517e-01, 1.797693134862e+308, 4.9869e-01, 1.6176e-02, - 2DIAGNOSTIC, 7, -5.895854968269e-01, 1.797693134862e+308, 5.1804e-01, 1.9349e-02, - 2DIAGNOSTIC, 8, -5.896675777028e-01, 1.797693134862e+308, 5.3380e-01, 1.5762e-02, - 2DIAGNOSTIC, 9, -5.897543848930e-01, 1.797693134862e+308, 5.4761e-01, 1.3808e-02, - 2DIAGNOSTIC, 10, -5.898460700983e-01, 9.143630951523e-04, 5.6156e-01, 1.3947e-02, - 2DIAGNOSTIC, 11, -5.899899452701e-01, 6.547298388469e-04, 5.7588e-01, 1.4325e-02, - 2DIAGNOSTIC, 12, -5.900616472812e-01, 4.310268925294e-04, 5.9068e-01, 1.4803e-02, - 2DIAGNOSTIC, 13, -5.903110830837e-01, 2.698179560109e-04, 6.2398e-01, 3.3293e-02, - 2DIAGNOSTIC, 14, -5.903149573119e-01, 1.597854911267e-04, 6.4113e-01, 1.7151e-02, - 2DIAGNOSTIC, 15, -5.902917425043e-01, 9.441799803546e-05, 6.5601e-01, 1.4879e-02, - 2DIAGNOSTIC, 16, -5.902978642113e-01, 5.876460094924e-05, 6.7121e-01, 1.5205e-02, - 2DIAGNOSTIC, 17, -5.902786696892e-01, 4.710271018488e-05, 6.8814e-01, 1.6925e-02, - 2DIAGNOSTIC, 18, -5.902702698766e-01, 3.445200835021e-05, 7.0530e-01, 1.7161e-02, - 2DIAGNOSTIC, 19, -5.902614839376e-01, 2.207820061575e-05, 7.1998e-01, 1.4685e-02, - 2DIAGNOSTIC, 20, -5.902263518419e-01, 1.043908683782e-05, 7.3643e-01, 1.6447e-02, - 2DIAGNOSTIC, 21, -5.902288262068e-01, 2.493710276177e-06, 7.5332e-01, 1.6885e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.936308335564e-01, 1.797693134862e+308, 1.1437e+00, 3.9037e-01, - 2DIAGNOSTIC, 2, -4.941904306824e-01, 1.797693134862e+308, 1.2452e+00, 1.0154e-01, - 2DIAGNOSTIC, 3, -4.946662635121e-01, 1.797693134862e+308, 1.3462e+00, 1.0100e-01, - 2DIAGNOSTIC, 4, -4.949633852209e-01, 1.797693134862e+308, 1.4491e+00, 1.0289e-01, - 2DIAGNOSTIC, 5, -4.951549807410e-01, 1.797693134862e+308, 1.5512e+00, 1.0209e-01, - 2DIAGNOSTIC, 6, -4.952520403951e-01, 1.797693134862e+308, 1.6525e+00, 1.0125e-01, - 2DIAGNOSTIC, 7, -4.953246318698e-01, 1.797693134862e+308, 1.7701e+00, 1.1765e-01, - 2DIAGNOSTIC, 8, -4.954185797433e-01, 1.797693134862e+308, 1.9300e+00, 1.5989e-01, - 2DIAGNOSTIC, 9, -4.954453170328e-01, 1.797693134862e+308, 2.0479e+00, 1.1791e-01, - 2DIAGNOSTIC, 10, -4.954519440021e-01, 2.116394395236e-04, 2.1654e+00, 1.1753e-01, - 2DIAGNOSTIC, 11, -4.954543135143e-01, 1.294017469687e-04, 2.2677e+00, 1.0227e-01, - 2DIAGNOSTIC, 12, -4.954651144799e-01, 7.642590370864e-05, 2.3707e+00, 1.0294e-01, - 2DIAGNOSTIC, 13, -4.954858263414e-01, 4.657506765524e-05, 2.4748e+00, 1.0414e-01, - 2DIAGNOSTIC, 14, -4.955185845747e-01, 3.033014851533e-05, 2.5772e+00, 1.0238e-01, - 2DIAGNOSTIC, 15, -4.955620259072e-01, 2.264334390335e-05, 2.6960e+00, 1.1882e-01, - 2DIAGNOSTIC, 16, -4.956491040034e-01, 2.060129724898e-05, 2.9215e+00, 2.2552e-01, - 2DIAGNOSTIC, 17, -4.956491074801e-01, 1.940339528021e-05, 3.0518e+00, 1.3024e-01, - 2DIAGNOSTIC, 18, -4.956491083236e-01, 1.973371336652e-05, 3.1980e+00, 1.4627e-01, - 2DIAGNOSTIC, 19, -4.956491084157e-01, 1.919145913895e-05, 3.4951e+00, 2.9708e-01, - 2DIAGNOSTIC, 20, -4.956491084158e-01, 1.724354508122e-05, 3.7260e+00, 2.3089e-01, - 2DIAGNOSTIC, 21, -4.956491084158e-01, 1.405637634395e-05, 3.8439e+00, 1.1789e-01, - 2DIAGNOSTIC, 22, -4.956491084158e-01, 1.027476726793e-05, 3.9903e+00, 1.4646e-01, - 2DIAGNOSTIC, 23, -4.956491084158e-01, 6.538069307470e-06, 4.1145e+00, 1.2413e-01, - 2DIAGNOSTIC, 24, -4.956491084158e-01, 3.408328793718e-06, 4.2498e+00, 1.3531e-01, - 2DIAGNOSTIC, 25, -4.956491084158e-01, 1.273314983424e-06, 4.3832e+00, 1.3347e-01, - 2DIAGNOSTIC, 26, -4.956491084158e-01, 1.224217440553e-06, 4.5003e+00, 1.1706e-01, - 2DIAGNOSTIC, 27, -4.956491084158e-01, 1.178830137470e-06, 4.6345e+00, 1.3422e-01, - 2DIAGNOSTIC, 28, -4.956491084158e-01, 1.136703641567e-06, 4.7503e+00, 1.1578e-01, - 2DIAGNOSTIC, 29, -4.956491084158e-01, 1.097485810377e-06, 4.8694e+00, 1.1907e-01, - 2DIAGNOSTIC, 30, -4.956491084158e-01, 1.060883867247e-06, 4.9881e+00, 1.1869e-01, - 2DIAGNOSTIC, 31, -4.956491084158e-01, 1.026644531825e-06, 5.1099e+00, 1.2179e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.277958919732e-01, 1.797693134862e+308, 6.4431e+00, 1.3332e+00, - 2DIAGNOSTIC, 2, -4.281001524661e-01, 1.797693134862e+308, 7.0784e+00, 6.3533e-01, - 2DIAGNOSTIC, 3, -4.284086294734e-01, 1.797693134862e+308, 7.7048e+00, 6.2640e-01, - 2DIAGNOSTIC, 4, -4.285317710577e-01, 1.797693134862e+308, 8.4082e+00, 7.0345e-01, - 2DIAGNOSTIC, 5, -4.285787900469e-01, 1.797693134862e+308, 9.6404e+00, 1.2322e+00, - 2DIAGNOSTIC, 6, -4.285794938819e-01, 1.797693134862e+308, 1.0332e+01, 6.9127e-01, - 2DIAGNOSTIC, 7, -4.285799503819e-01, 1.797693134862e+308, 1.1047e+01, 7.1582e-01, - 2DIAGNOSTIC, 8, -4.285800419786e-01, 1.797693134862e+308, 1.1764e+01, 7.1614e-01, - 2DIAGNOSTIC, 9, -4.285803359353e-01, 1.797693134862e+308, 1.2602e+01, 8.3802e-01, - 2DIAGNOSTIC, 10, -4.285803303991e-01, 9.252963756698e-05, 1.3306e+01, 7.0438e-01, - 2DIAGNOSTIC, 11, -4.285800490001e-01, 4.297405614444e-05, 1.4031e+01, 7.2452e-01, - 2DIAGNOSTIC, 12, -4.285802210713e-01, 1.455032134862e-05, 1.4651e+01, 6.2035e-01, - 2DIAGNOSTIC, 13, -4.285803642082e-01, 5.022223649578e-06, 1.5439e+01, 7.8852e-01, - 2DIAGNOSTIC, 14, -4.285805094797e-01, 2.399303612247e-06, 1.6152e+01, 7.1280e-01, - 2DIAGNOSTIC, 15, -4.285804881348e-01, 2.192293524231e-06, 1.6925e+01, 7.7293e-01, - 2DIAGNOSTIC, 16, -4.285802427501e-01, 2.023714544386e-06, 1.7602e+01, 6.7683e-01, - 2DIAGNOSTIC, 17, -4.285802732575e-01, 1.891032023395e-06, 1.8292e+01, 6.8984e-01, - 2DIAGNOSTIC, 18, -4.285800166024e-01, 1.764444728734e-06, 1.8935e+01, 6.4279e-01, - 2DIAGNOSTIC, 19, -4.285799313683e-01, 1.658772733629e-06, 1.9556e+01, 6.2141e-01, - 2DIAGNOSTIC, 20, -4.285800244858e-01, 1.568469762250e-06, 2.0201e+01, 6.4463e-01, - 2DIAGNOSTIC, 21, -4.285803116750e-01, 1.488882913112e-06, 2.0905e+01, 7.0460e-01, - 2DIAGNOSTIC, 22, -4.285804316599e-01, 1.427480651087e-06, 2.1505e+01, 6.0020e-01, - 2DIAGNOSTIC, 23, -4.285807540103e-01, 1.386518748960e-06, 2.2200e+01, 6.9416e-01, - 2DIAGNOSTIC, 24, -4.285810592341e-01, 1.361033562478e-06, 2.2918e+01, 7.1857e-01, - 2DIAGNOSTIC, 25, -4.285807111125e-01, 1.324406359846e-06, 2.3636e+01, 7.1799e-01, - 2DIAGNOSTIC, 26, -4.285804700822e-01, 1.273515482382e-06, 2.4250e+01, 6.1334e-01, - 2DIAGNOSTIC, 27, -4.285806856583e-01, 1.228015185914e-06, 2.4947e+01, 6.9719e-01, - 2DIAGNOSTIC, 28, -4.285808811905e-01, 1.179307460415e-06, 2.5587e+01, 6.3998e-01, - 2DIAGNOSTIC, 29, -4.285806603176e-01, 1.122677871911e-06, 2.6216e+01, 6.2968e-01, - 2DIAGNOSTIC, 30, -4.285810439858e-01, 1.078298597010e-06, 2.6922e+01, 7.0603e-01, - 2DIAGNOSTIC, 31, -4.285812162722e-01, 1.044913811574e-06, 2.7614e+01, 6.9118e-01, - 2DIAGNOSTIC, 32, -4.285809467774e-01, 1.008362374960e-06, 2.8330e+01, 7.1671e-01, - Elapsed time (stage 1): 2.8723e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.075678590531e-01, 1.797693134862e+308, 2.5701e-01, 2.5701e-01, - 1DIAGNOSTIC, 2, -9.199527207507e-01, 1.797693134862e+308, 3.5309e-01, 9.6079e-02, - 1DIAGNOSTIC, 3, -9.294390696742e-01, 1.797693134862e+308, 4.4822e-01, 9.5136e-02, - 1DIAGNOSTIC, 4, -9.362333587884e-01, 1.797693134862e+308, 5.4480e-01, 9.6578e-02, - 1DIAGNOSTIC, 5, -9.412383622632e-01, 1.797693134862e+308, 6.4424e-01, 9.9442e-02, - 1DIAGNOSTIC, 6, -9.447590278513e-01, 1.797693134862e+308, 7.4314e-01, 9.8896e-02, - 1DIAGNOSTIC, 7, -9.477166324978e-01, 1.797693134862e+308, 8.4538e-01, 1.0224e-01, - 1DIAGNOSTIC, 8, -9.501565750232e-01, 1.797693134862e+308, 9.5072e-01, 1.0534e-01, - 1DIAGNOSTIC, 9, -9.521734693125e-01, 1.797693134862e+308, 1.0490e+00, 9.8237e-02, - 1DIAGNOSTIC, 10, -9.537964426786e-01, 2.876637413911e-03, 1.1470e+00, 9.8071e-02, - 1DIAGNOSTIC, 11, -9.550754667061e-01, 1.989036494595e-03, 1.2441e+00, 9.7082e-02, - 1DIAGNOSTIC, 12, -9.559786839564e-01, 1.403874653128e-03, 1.3416e+00, 9.7517e-02, - 1DIAGNOSTIC, 13, -9.565669354710e-01, 1.014564935221e-03, 1.4392e+00, 9.7539e-02, - 1DIAGNOSTIC, 14, -9.570135385337e-01, 7.437376081928e-04, 1.5337e+00, 9.4490e-02, - 1DIAGNOSTIC, 15, -9.574106109922e-01, 5.491294329970e-04, 1.6290e+00, 9.5323e-02, - 1DIAGNOSTIC, 16, -9.576719647268e-01, 3.991795795084e-04, 1.7261e+00, 9.7120e-02, - 1DIAGNOSTIC, 17, -9.578839570785e-01, 2.859201787258e-04, 1.8268e+00, 1.0067e-01, - 1DIAGNOSTIC, 18, -9.580512237068e-01, 2.021812332614e-04, 1.9316e+00, 1.0478e-01, - 1DIAGNOSTIC, 19, -9.582111193103e-01, 1.427708051647e-04, 2.0321e+00, 1.0054e-01, - 1DIAGNOSTIC, 20, -9.581661081400e-01, 9.955530506960e-05, 2.1284e+00, 9.6339e-02, - 1DIAGNOSTIC, 21, -9.581798861153e-01, 6.965487878456e-05, 2.2296e+00, 1.0119e-01, - 1DIAGNOSTIC, 22, -9.580538349214e-01, 4.660922019555e-05, 2.3271e+00, 9.7516e-02, - 1DIAGNOSTIC, 23, -9.581399147642e-01, 3.007905537323e-05, 2.4207e+00, 9.3611e-02, - 1DIAGNOSTIC, 24, -9.581116349985e-01, 1.732294719881e-05, 2.5198e+00, 9.9036e-02, - 1DIAGNOSTIC, 25, -9.580828632071e-01, 8.476190367653e-06, 2.6159e+00, 9.6082e-02, - 1DIAGNOSTIC, 26, -9.580877937721e-01, 2.712593797256e-06, 2.7129e+00, 9.7044e-02, - 1DIAGNOSTIC, 27, -9.581226830182e-01, -5.667254564246e-08, 2.8107e+00, 9.7823e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.116631153667e-01, 1.797693134862e+308, 3.6507e+00, 8.4000e-01, - 1DIAGNOSTIC, 2, -9.155549009932e-01, 1.797693134862e+308, 4.3129e+00, 6.6212e-01, - 1DIAGNOSTIC, 3, -9.190496611555e-01, 1.797693134862e+308, 4.9731e+00, 6.6020e-01, - 1DIAGNOSTIC, 4, -9.218713395526e-01, 1.797693134862e+308, 5.6472e+00, 6.7419e-01, - 1DIAGNOSTIC, 5, -9.242356185632e-01, 1.797693134862e+308, 6.3149e+00, 6.6764e-01, - 1DIAGNOSTIC, 6, -9.262884783945e-01, 1.797693134862e+308, 6.9844e+00, 6.6953e-01, - 1DIAGNOSTIC, 7, -9.280646560668e-01, 1.797693134862e+308, 7.6591e+00, 6.7467e-01, - 1DIAGNOSTIC, 8, -9.297266510450e-01, 1.797693134862e+308, 8.3321e+00, 6.7302e-01, - 1DIAGNOSTIC, 9, -9.313142126068e-01, 1.797693134862e+308, 8.9950e+00, 6.6287e-01, - 1DIAGNOSTIC, 10, -9.328633053545e-01, 1.408588157027e-03, 9.6618e+00, 6.6682e-01, - 1DIAGNOSTIC, 11, -9.343745653017e-01, 1.130635347358e-03, 1.0332e+01, 6.7029e-01, - 1DIAGNOSTIC, 12, -9.357466905441e-01, 9.311596814710e-04, 1.1005e+01, 6.7323e-01, - 1DIAGNOSTIC, 13, -9.370815880194e-01, 7.914571242996e-04, 1.1672e+01, 6.6633e-01, - 1DIAGNOSTIC, 14, -9.383486047904e-01, 6.886433246045e-04, 1.2345e+01, 6.7316e-01, - 1DIAGNOSTIC, 15, -9.395655273117e-01, 6.091785080109e-04, 1.3020e+01, 6.7495e-01, - 1DIAGNOSTIC, 16, -9.406656193261e-01, 5.436239625063e-04, 1.3689e+01, 6.6908e-01, - 1DIAGNOSTIC, 17, -9.416446714645e-01, 4.849562576956e-04, 1.4359e+01, 6.7008e-01, - 1DIAGNOSTIC, 18, -9.425240285316e-01, 4.308873820727e-04, 1.5024e+01, 6.6539e-01, - 1DIAGNOSTIC, 19, -9.432944433994e-01, 3.802169444869e-04, 1.5711e+01, 6.8668e-01, - 1DIAGNOSTIC, 20, -9.439627973828e-01, 3.328707767190e-04, 1.6385e+01, 6.7408e-01, - 1DIAGNOSTIC, 21, -9.445596444045e-01, 2.894753289163e-04, 1.7055e+01, 6.7030e-01, - 1DIAGNOSTIC, 22, -9.450891502636e-01, 2.492007275780e-04, 1.7725e+01, 6.6924e-01, - 1DIAGNOSTIC, 23, -9.455661121577e-01, 2.129884304906e-04, 1.8390e+01, 6.6509e-01, - 1DIAGNOSTIC, 24, -9.459827909784e-01, 1.810693806037e-04, 1.9061e+01, 6.7123e-01, - 1DIAGNOSTIC, 25, -9.463595387093e-01, 1.540137126269e-04, 1.9736e+01, 6.7504e-01, - 1DIAGNOSTIC, 26, -9.467019919330e-01, 1.313644891668e-04, 2.0407e+01, 6.7099e-01, - 1DIAGNOSTIC, 27, -9.470074231580e-01, 1.124279379499e-04, 2.1071e+01, 6.6404e-01, - 1DIAGNOSTIC, 28, -9.472837216755e-01, 9.674889485919e-05, 2.1735e+01, 6.6415e-01, - 1DIAGNOSTIC, 29, -9.475359393219e-01, 8.371382417494e-05, 2.2402e+01, 6.6639e-01, - 1DIAGNOSTIC, 30, -9.477686834298e-01, 7.275108195384e-05, 2.3072e+01, 6.7004e-01, - 1DIAGNOSTIC, 31, -9.479807295459e-01, 6.353579150933e-05, 2.3733e+01, 6.6141e-01, - 1DIAGNOSTIC, 32, -9.481780570110e-01, 5.578216117937e-05, 2.4400e+01, 6.6738e-01, - 1DIAGNOSTIC, 33, -9.483574000556e-01, 4.926467714344e-05, 2.5070e+01, 6.6933e-01, - 1DIAGNOSTIC, 34, -9.485218001443e-01, 4.366559393377e-05, 2.5734e+01, 6.6419e-01, - 1DIAGNOSTIC, 35, -9.486747551812e-01, 3.885814836258e-05, 2.6405e+01, 6.7073e-01, - 1DIAGNOSTIC, 36, -9.488158447691e-01, 3.473012989042e-05, 2.7078e+01, 6.7368e-01, - 1DIAGNOSTIC, 37, -9.489404970917e-01, 3.108230219645e-05, 2.7754e+01, 6.7539e-01, - 1DIAGNOSTIC, 38, -9.490574217644e-01, 2.784526005213e-05, 2.8422e+01, 6.6858e-01, - 1DIAGNOSTIC, 39, -9.491675224302e-01, 2.497910639834e-05, 2.9091e+01, 6.6843e-01, - 1DIAGNOSTIC, 40, -9.492796194726e-01, 2.253002527606e-05, 2.9760e+01, 6.6906e-01, - 1DIAGNOSTIC, 41, -9.493793171595e-01, 2.039663246517e-05, 3.0422e+01, 6.6220e-01, - 1DIAGNOSTIC, 42, -9.494627473777e-01, 1.848937225494e-05, 3.1086e+01, 6.6374e-01, - 1DIAGNOSTIC, 43, -9.495461680427e-01, 1.680586016381e-05, 3.1754e+01, 6.6818e-01, - 1DIAGNOSTIC, 44, -9.496217024148e-01, 1.529098300572e-05, 3.2419e+01, 6.6539e-01, - 1DIAGNOSTIC, 45, -9.496865848650e-01, 1.389315604384e-05, 3.3084e+01, 6.6480e-01, - 1DIAGNOSTIC, 46, -9.497501978139e-01, 1.262421311234e-05, 3.3745e+01, 6.6061e-01, - 1DIAGNOSTIC, 47, -9.498078353869e-01, 1.142589759109e-05, 3.4418e+01, 6.7320e-01, - 1DIAGNOSTIC, 48, -9.498567796337e-01, 1.027984679303e-05, 3.5086e+01, 6.6809e-01, - 1DIAGNOSTIC, 49, -9.499037868486e-01, 9.214772291492e-06, 3.5753e+01, 6.6702e-01, - 1DIAGNOSTIC, 50, -9.499379343352e-01, 8.243375403644e-06, 3.6422e+01, 6.6910e-01, - 1DIAGNOSTIC, 51, -9.499763493305e-01, 7.390996894337e-06, 3.7096e+01, 6.7378e-01, - 1DIAGNOSTIC, 52, -9.500134595593e-01, 6.612340808423e-06, 3.7775e+01, 6.7935e-01, - 1DIAGNOSTIC, 53, -9.500482064832e-01, 5.951414876932e-06, 3.8442e+01, 6.6687e-01, - 1DIAGNOSTIC, 54, -9.500762448769e-01, 5.373871112137e-06, 3.9113e+01, 6.7094e-01, - 1DIAGNOSTIC, 55, -9.500920607245e-01, 4.795447733928e-06, 3.9783e+01, 6.6978e-01, - 1DIAGNOSTIC, 56, -9.501133873553e-01, 4.286454716913e-06, 4.0450e+01, 6.6749e-01, - 1DIAGNOSTIC, 57, -9.501340151617e-01, 3.846498846573e-06, 4.1122e+01, 6.7149e-01, - 1DIAGNOSTIC, 58, -9.501527941176e-01, 3.451819097000e-06, 4.1793e+01, 6.7093e-01, - 1DIAGNOSTIC, 59, -9.501699593937e-01, 3.117063092556e-06, 4.2462e+01, 6.6962e-01, - 1DIAGNOSTIC, 60, -9.501837474477e-01, 2.784421041509e-06, 4.3142e+01, 6.7953e-01, - 1DIAGNOSTIC, 61, -9.501968726241e-01, 2.498076806235e-06, 4.3816e+01, 6.7369e-01, - 1DIAGNOSTIC, 62, -9.502090490662e-01, 2.266678029911e-06, 4.4478e+01, 6.6214e-01, - 1DIAGNOSTIC, 63, -9.502208983831e-01, 2.093755895639e-06, 4.5142e+01, 6.6463e-01, - 1DIAGNOSTIC, 64, -9.502197849147e-01, 1.899200170463e-06, 4.5810e+01, 6.6763e-01, - 1DIAGNOSTIC, 65, -9.502261982903e-01, 1.678840318698e-06, 4.6513e+01, 7.0329e-01, - 1DIAGNOSTIC, 66, -9.502309411511e-01, 1.468048475485e-06, 4.7201e+01, 6.8801e-01, - 1DIAGNOSTIC, 67, -9.502356148170e-01, 1.280447722518e-06, 4.7870e+01, 6.6851e-01, - 1DIAGNOSTIC, 68, -9.502388473470e-01, 1.117090286246e-06, 4.8549e+01, 6.7948e-01, - 1DIAGNOSTIC, 69, -9.502318985731e-01, 9.405856461232e-07, 4.9216e+01, 6.6654e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.917565878698e-01, 1.797693134862e+308, 5.4895e+01, 5.6795e+00, - 1DIAGNOSTIC, 2, -8.952874544693e-01, 1.797693134862e+308, 6.0321e+01, 5.4255e+00, - 1DIAGNOSTIC, 3, -8.992860656328e-01, 1.797693134862e+308, 6.5757e+01, 5.4358e+00, - 1DIAGNOSTIC, 4, -9.024367322379e-01, 1.797693134862e+308, 7.1173e+01, 5.4164e+00, - 1DIAGNOSTIC, 5, -9.052122437739e-01, 1.797693134862e+308, 7.6597e+01, 5.4241e+00, - 1DIAGNOSTIC, 6, -9.075591557493e-01, 1.797693134862e+308, 8.2010e+01, 5.4128e+00, - 1DIAGNOSTIC, 7, -9.095946532650e-01, 1.797693134862e+308, 8.7448e+01, 5.4377e+00, - 1DIAGNOSTIC, 8, -9.114030659877e-01, 1.797693134862e+308, 9.2893e+01, 5.4450e+00, - 1DIAGNOSTIC, 9, -9.130277422835e-01, 1.797693134862e+308, 9.8429e+01, 5.5367e+00, - 1DIAGNOSTIC, 10, -9.143644990200e-01, 1.584181041033e-03, 1.0384e+02, 5.4141e+00, - 1DIAGNOSTIC, 11, -9.154568393778e-01, 1.257895287576e-03, 1.0932e+02, 5.4748e+00, - 1DIAGNOSTIC, 12, -9.165797017909e-01, 9.937088676205e-04, 1.1477e+02, 5.4494e+00, - 1DIAGNOSTIC, 13, -9.175004068196e-01, 7.981517003170e-04, 1.2021e+02, 5.4430e+00, - 1DIAGNOSTIC, 14, -9.185006895953e-01, 6.501454437827e-04, 1.2562e+02, 5.4054e+00, - 1DIAGNOSTIC, 15, -9.193192191750e-01, 5.369068256265e-04, 1.3105e+02, 5.4379e+00, - 1DIAGNOSTIC, 16, -9.201128936106e-01, 4.495940182709e-04, 1.3661e+02, 5.5535e+00, - 1DIAGNOSTIC, 17, -9.208538960288e-01, 3.818343815235e-04, 1.4207e+02, 5.4664e+00, - 1DIAGNOSTIC, 18, -9.215338236328e-01, 3.291206389475e-04, 1.4768e+02, 5.6069e+00, - 1DIAGNOSTIC, 19, -9.221544072583e-01, 2.880737888543e-04, 1.5318e+02, 5.4953e+00, - 1DIAGNOSTIC, 20, -9.227189870427e-01, 2.538668590694e-04, 1.5862e+02, 5.4402e+00, - 1DIAGNOSTIC, 21, -9.232175092829e-01, 2.227286155015e-04, 1.6406e+02, 5.4398e+00, - 1DIAGNOSTIC, 22, -9.236119192248e-01, 1.950375422811e-04, 1.6957e+02, 5.5144e+00, - 1DIAGNOSTIC, 23, -9.239184734815e-01, 1.680222644218e-04, 1.7504e+02, 5.4739e+00, - 1DIAGNOSTIC, 24, -9.241527893927e-01, 1.434955210378e-04, 1.8048e+02, 5.4371e+00, - 1DIAGNOSTIC, 25, -9.243335150724e-01, 1.198666391525e-04, 1.8597e+02, 5.4892e+00, - 1DIAGNOSTIC, 26, -9.244727753037e-01, 9.792441116424e-05, 1.9141e+02, 5.4348e+00, - 1DIAGNOSTIC, 27, -9.245740018255e-01, 7.808524662497e-05, 1.9687e+02, 5.4681e+00, - 1DIAGNOSTIC, 28, -9.247794126129e-01, 6.214467283379e-05, 2.0231e+02, 5.4385e+00, - 1DIAGNOSTIC, 29, -9.247978294039e-01, 4.826483199914e-05, 2.0781e+02, 5.4981e+00, - 1DIAGNOSTIC, 30, -9.249232844938e-01, 3.794013247752e-05, 2.1328e+02, 5.4654e+00, - 1DIAGNOSTIC, 31, -9.248750633738e-01, 2.923083751548e-05, 2.1873e+02, 5.4532e+00, - 1DIAGNOSTIC, 32, -9.248169157056e-01, 2.162991313730e-05, 2.2436e+02, 5.6345e+00, - 1DIAGNOSTIC, 33, -9.247650479526e-01, 1.490084902150e-05, 2.2982e+02, 5.4566e+00, - 1DIAGNOSTIC, 34, -9.247188765853e-01, 8.932350534833e-06, 2.3527e+02, 5.4508e+00, - 1DIAGNOSTIC, 35, -9.246841160765e-01, 3.825723506740e-06, 2.4074e+02, 5.4671e+00, - 1DIAGNOSTIC, 36, -9.246621054571e-01, -2.627296858890e-07, 2.4619e+02, 5.4492e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.849639650955e-01, 1.797693134862e+308, 2.9114e+02, 4.4954e+01, - 1DIAGNOSTIC, 2, -8.867015881015e-01, 1.797693134862e+308, 3.3565e+02, 4.4512e+01, - 1DIAGNOSTIC, 3, -8.887346456768e-01, 1.797693134862e+308, 3.7983e+02, 4.4179e+01, - 1DIAGNOSTIC, 4, -8.908686237252e-01, 1.797693134862e+308, 4.2440e+02, 4.4569e+01, - 1DIAGNOSTIC, 5, -8.927009888352e-01, 1.797693134862e+308, 4.6872e+02, 4.4324e+01, - 1DIAGNOSTIC, 6, -8.942675977524e-01, 1.797693134862e+308, 5.1365e+02, 4.4922e+01, - 1DIAGNOSTIC, 7, -8.956293588275e-01, 1.797693134862e+308, 5.5868e+02, 4.5031e+01, - 1DIAGNOSTIC, 8, -8.968541358272e-01, 1.797693134862e+308, 6.0331e+02, 4.4631e+01, - 1DIAGNOSTIC, 9, -8.978645648930e-01, 1.797693134862e+308, 6.4822e+02, 4.4916e+01, - 1DIAGNOSTIC, 10, -8.987508928656e-01, 1.013054310208e-03, 6.9277e+02, 4.4544e+01, - 1DIAGNOSTIC, 11, -8.995306522811e-01, 8.316508227772e-04, 7.3728e+02, 4.4510e+01, - 1DIAGNOSTIC, 12, -9.001271474718e-01, 6.673854337574e-04, 7.8220e+02, 4.4925e+01, - 1DIAGNOSTIC, 13, -9.007397092228e-01, 5.323190398207e-04, 8.2702e+02, 4.4820e+01, - 1DIAGNOSTIC, 14, -9.011916008846e-01, 4.264444775985e-04, 8.7201e+02, 4.4992e+01, - 1DIAGNOSTIC, 15, -9.016054298646e-01, 3.430459917166e-04, 9.1729e+02, 4.5271e+01, - 1DIAGNOSTIC, 16, -9.019920000314e-01, 2.771610691978e-04, 9.6198e+02, 4.4693e+01, - 1DIAGNOSTIC, 17, -9.023484509982e-01, 2.253858471929e-04, 1.0063e+03, 4.4351e+01, - 1DIAGNOSTIC, 18, -9.026973391793e-01, 1.861443238493e-04, 1.0510e+03, 4.4654e+01, - 1DIAGNOSTIC, 19, -9.030186992948e-01, 1.559052311703e-04, 1.0955e+03, 4.4468e+01, - 1DIAGNOSTIC, 20, -9.033393225408e-01, 1.332686644179e-04, 1.1401e+03, 4.4635e+01, - Elapsed time (stage 2): 1140 - - -Total elapsed time: 1194 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:16 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:16 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:19 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:23 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:27 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30981 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:27 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:31 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:31 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31031 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:31 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/anat/sub-PNC005_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:34 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:34 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31084 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:34 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31089 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:34 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:39 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:41 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:41 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:42 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:43 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:45 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:45 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:47 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:47 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/surf/sub-PNC005_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:32:50 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02/sub-PNC005_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC005 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:11 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC005 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:12 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC005 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:12 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31707 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:14 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:14 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc/sub-PNC005_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/xfm/sub-PNC005_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 31740 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:16 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:16 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC005_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 69.333 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/logs/proc_func_18-03-2024-32440.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:22 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC005 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-02/QC/sub-PNC005_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/25644_micapipe_proc-func_sub-PNC005_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC005* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 69.383 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC005_ses-02 -========================reprocessing without filter=================== -sub-PNC005_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC005 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC005 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC005 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC005 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:26 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:33:26 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:35:36 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:37:46 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:38:01 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.00 (mm) at sub-brick 1 -++ Max delta displ in automask = 0.25 (mm) at sub-brick 2 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:51:05 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:51:17 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:53:37 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:55:51 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC005/ses-03/func/sub-PNC005_ses-03_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 16:58:11 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.497 -1.602 2.412 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.1 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.884 -2.185 3.349 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 74.0 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:03:07 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:03:35 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5621895d2a50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [105.102, 61.3677, -101.738] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562189449730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5621895e9350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5621895d9600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [72.8093, 111.5, -124.522] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5621895dbe40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562189de5f50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x562189de4270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [105.102, 61.3677, -101.738] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5621895d8640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56218a9101c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x562189de3a00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [72.8093, 111.5, -124.522] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5621895df390) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56218b10a300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.386505986081e-01, 1.797693134862e+308, 4.1591e-02, 4.1591e-02, - 2DIAGNOSTIC, 2, -6.404302399395e-01, 1.797693134862e+308, 4.3020e-02, 1.4291e-03, - 2DIAGNOSTIC, 3, -6.428957490250e-01, 1.797693134862e+308, 4.4301e-02, 1.2810e-03, - 2DIAGNOSTIC, 4, -6.437848697505e-01, 1.797693134862e+308, 4.5623e-02, 1.3220e-03, - 2DIAGNOSTIC, 5, -6.450741403023e-01, 1.797693134862e+308, 4.6874e-02, 1.2510e-03, - 2DIAGNOSTIC, 6, -6.470932953791e-01, 1.797693134862e+308, 4.8388e-02, 1.5140e-03, - 2DIAGNOSTIC, 7, -6.483426230505e-01, 1.797693134862e+308, 4.9913e-02, 1.5249e-03, - 2DIAGNOSTIC, 8, -6.496894050544e-01, 1.797693134862e+308, 5.1779e-02, 1.8659e-03, - 2DIAGNOSTIC, 9, -6.520740543051e-01, 1.797693134862e+308, 5.3074e-02, 1.2951e-03, - 2DIAGNOSTIC, 10, -6.522200967773e-01, 1.365782088476e-03, 5.4589e-02, 1.5152e-03, - 2DIAGNOSTIC, 11, -6.526638436083e-01, 1.144089705524e-03, 5.6155e-02, 1.5659e-03, - 2DIAGNOSTIC, 12, -6.544494797092e-01, 9.860360843408e-04, 5.8401e-02, 2.2459e-03, - 2DIAGNOSTIC, 13, -6.559368148116e-01, 8.951545434528e-04, 5.9894e-02, 1.4930e-03, - 2DIAGNOSTIC, 14, -6.564222309697e-01, 7.777564294380e-04, 6.1865e-02, 1.9710e-03, - 2DIAGNOSTIC, 15, -6.567708821974e-01, 6.532151951343e-04, 6.3373e-02, 1.5080e-03, - 2DIAGNOSTIC, 16, -6.572283373415e-01, 5.531275603600e-04, 6.4929e-02, 1.5562e-03, - 2DIAGNOSTIC, 17, -6.636909669643e-01, 6.110371428751e-04, 6.6704e-02, 1.7750e-03, - 2DIAGNOSTIC, 18, -6.676949517919e-01, 7.292047789326e-04, 6.9180e-02, 2.4760e-03, - 2DIAGNOSTIC, 19, -6.693587288087e-01, 8.597274520031e-04, 7.1027e-02, 1.8470e-03, - 2DIAGNOSTIC, 20, -6.807867384583e-01, 1.150849752352e-03, 7.3157e-02, 2.1300e-03, - 2DIAGNOSTIC, 21, -6.822401386456e-01, 1.339159939725e-03, 7.5033e-02, 1.8761e-03, - 2DIAGNOSTIC, 22, -6.824406128529e-01, 1.423428461365e-03, 7.6483e-02, 1.4501e-03, - 2DIAGNOSTIC, 23, -6.828554776349e-01, 1.404828467457e-03, 7.9049e-02, 2.5659e-03, - 2DIAGNOSTIC, 24, -6.829093186901e-01, 1.266706541100e-03, 8.0476e-02, 1.4272e-03, - 2DIAGNOSTIC, 25, -6.832726424270e-01, 1.032466874128e-03, 8.1891e-02, 1.4150e-03, - 2DIAGNOSTIC, 26, -6.834251152416e-01, 7.271086824912e-04, 8.3348e-02, 1.4570e-03, - 2DIAGNOSTIC, 27, -6.834426961743e-01, 4.812960937335e-04, 8.5297e-02, 1.9491e-03, - 2DIAGNOSTIC, 28, -6.834663470309e-01, 2.718568919156e-04, 8.6717e-02, 1.4200e-03, - 2DIAGNOSTIC, 29, -6.834863571259e-01, 7.210473851298e-05, 8.8194e-02, 1.4770e-03, - 2DIAGNOSTIC, 30, -6.835207584781e-01, 4.245675583442e-05, 9.0285e-02, 2.0902e-03, - 2DIAGNOSTIC, 31, -6.835652923649e-01, 3.148360899434e-05, 9.2383e-02, 2.0988e-03, - 2DIAGNOSTIC, 32, -6.835653683038e-01, 2.092327166509e-05, 9.3795e-02, 1.4119e-03, - 2DIAGNOSTIC, 33, -6.835659406161e-01, 1.458791365529e-05, 9.5250e-02, 1.4551e-03, - 2DIAGNOSTIC, 34, -6.835681482445e-01, 7.946608290871e-06, 9.6658e-02, 1.4079e-03, - 2DIAGNOSTIC, 35, -6.835738902327e-01, 5.471700044418e-06, 9.8074e-02, 1.4160e-03, - 2DIAGNOSTIC, 36, -6.835842383311e-01, 4.623185994090e-06, 9.9577e-02, 1.5030e-03, - 2DIAGNOSTIC, 37, -6.836015417895e-01, 3.866889410120e-06, 1.0102e-01, 1.4429e-03, - 2DIAGNOSTIC, 38, -6.836222594198e-01, 3.367098627582e-06, 1.0365e-01, 2.6319e-03, - 2DIAGNOSTIC, 39, -6.836236201195e-01, 2.879618989857e-06, 1.0515e-01, 1.5030e-03, - 2DIAGNOSTIC, 40, -6.836251916479e-01, 2.594681480231e-06, 1.0662e-01, 1.4689e-03, - 2DIAGNOSTIC, 41, -6.836305346869e-01, 2.671816321832e-06, 1.0813e-01, 1.5051e-03, - 2DIAGNOSTIC, 42, -6.836417359789e-01, 2.675686938326e-06, 1.0961e-01, 1.4842e-03, - 2DIAGNOSTIC, 43, -6.836727552467e-01, 2.804867365126e-06, 1.1532e-01, 5.7080e-03, - 2DIAGNOSTIC, 44, -6.836727551781e-01, 2.748403924325e-06, 1.1691e-01, 1.5850e-03, - 2DIAGNOSTIC, 45, -6.836727553288e-01, 2.563504579379e-06, 1.1882e-01, 1.9150e-03, - 2DIAGNOSTIC, 46, -6.836727555835e-01, 2.307249393908e-06, 1.2069e-01, 1.8730e-03, - 2DIAGNOSTIC, 47, -6.836727560137e-01, 2.056861650359e-06, 1.2250e-01, 1.8098e-03, - 2DIAGNOSTIC, 48, -6.836727567396e-01, 1.864628280820e-06, 1.2418e-01, 1.6770e-03, - 2DIAGNOSTIC, 49, -6.836727579630e-01, 1.578958987163e-06, 1.2565e-01, 1.4660e-03, - 2DIAGNOSTIC, 50, -6.836727600201e-01, 1.234418420194e-06, 1.2709e-01, 1.4460e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.580800788619e-01, 1.797693134862e+308, 1.7497e-01, 4.7876e-02, - 2DIAGNOSTIC, 2, -3.578652721330e-01, 1.797693134862e+308, 1.7769e-01, 2.7249e-03, - 2DIAGNOSTIC, 3, -3.593441423250e-01, 1.797693134862e+308, 1.8083e-01, 3.1321e-03, - 2DIAGNOSTIC, 4, -3.616460997386e-01, 1.797693134862e+308, 1.8351e-01, 2.6882e-03, - 2DIAGNOSTIC, 5, -3.654117766686e-01, 1.797693134862e+308, 1.8592e-01, 2.4068e-03, - 2DIAGNOSTIC, 6, -3.698937903396e-01, 1.797693134862e+308, 1.8828e-01, 2.3541e-03, - 2DIAGNOSTIC, 7, -3.729787001422e-01, 1.797693134862e+308, 1.9053e-01, 2.2521e-03, - 2DIAGNOSTIC, 8, -3.746623467106e-01, 1.797693134862e+308, 1.9288e-01, 2.3539e-03, - 2DIAGNOSTIC, 9, -3.787063013077e-01, 1.797693134862e+308, 1.9575e-01, 2.8720e-03, - 2DIAGNOSTIC, 10, -3.845171899351e-01, 4.743455175760e-03, 1.9874e-01, 2.9862e-03, - 2DIAGNOSTIC, 11, -4.144825847792e-01, 6.620815328386e-03, 2.0123e-01, 2.4860e-03, - 2DIAGNOSTIC, 12, -4.233232845769e-01, 8.045749179251e-03, 2.0373e-01, 2.5010e-03, - 2DIAGNOSTIC, 13, -4.586825478659e-01, 1.056077987472e-02, 2.0681e-01, 3.0870e-03, - 2DIAGNOSTIC, 14, -5.497718949344e-01, 1.628667622246e-02, 2.1014e-01, 3.3259e-03, - 2DIAGNOSTIC, 15, -5.975642222646e-01, 2.165951318949e-02, 2.1279e-01, 2.6512e-03, - 2DIAGNOSTIC, 16, -6.124996483118e-01, 2.490185535803e-02, 2.1566e-01, 2.8682e-03, - 2DIAGNOSTIC, 17, -6.158343803684e-01, 2.565941065786e-02, 2.1791e-01, 2.2531e-03, - 2DIAGNOSTIC, 18, -6.175153112617e-01, 2.411094214175e-02, 2.2108e-01, 3.1672e-03, - 2DIAGNOSTIC, 19, -6.183397828998e-01, 2.071334378129e-02, 2.2395e-01, 2.8691e-03, - 2DIAGNOSTIC, 20, -6.188331722164e-01, 1.603480397183e-02, 2.2622e-01, 2.2671e-03, - 2DIAGNOSTIC, 21, -6.189782605523e-01, 1.138219499350e-02, 2.2847e-01, 2.2521e-03, - 2DIAGNOSTIC, 22, -6.192324424489e-01, 6.501586201832e-03, 2.3077e-01, 2.2988e-03, - 2DIAGNOSTIC, 23, -6.194574724915e-01, 2.433585483028e-03, 2.3366e-01, 2.8949e-03, - 2DIAGNOSTIC, 24, -6.196303752217e-01, 7.627062618425e-04, 2.3652e-01, 2.8639e-03, - 2DIAGNOSTIC, 25, -6.196528443489e-01, 2.850410775597e-04, 2.3879e-01, 2.2619e-03, - 2DIAGNOSTIC, 26, -6.198107596358e-01, 1.572590404221e-04, 2.4161e-01, 2.8269e-03, - 2DIAGNOSTIC, 27, -6.198445421758e-01, 9.652306407525e-05, 2.4396e-01, 2.3489e-03, - 2DIAGNOSTIC, 28, -6.197826678572e-01, 6.430233791027e-05, 2.4621e-01, 2.2461e-03, - 2DIAGNOSTIC, 29, -6.199012649737e-01, 4.687243790039e-05, 2.4875e-01, 2.5439e-03, - 2DIAGNOSTIC, 30, -6.199082744267e-01, 3.575267013024e-05, 2.5100e-01, 2.2521e-03, - 2DIAGNOSTIC, 31, -6.200449275100e-01, 2.716952664019e-05, 2.5324e-01, 2.2380e-03, - 2DIAGNOSTIC, 32, -6.201231352062e-01, 2.234148656318e-05, 2.5698e-01, 3.7329e-03, - 2DIAGNOSTIC, 33, -6.200376232636e-01, 1.812689930634e-05, 2.5922e-01, 2.2411e-03, - 2DIAGNOSTIC, 34, -6.200426272929e-01, 1.551712412778e-05, 2.6148e-01, 2.2631e-03, - 2DIAGNOSTIC, 35, -6.200575593462e-01, 1.220007191947e-05, 2.6377e-01, 2.2879e-03, - 2DIAGNOSTIC, 36, -6.199904770504e-01, 9.332189219939e-06, 2.6595e-01, 2.1870e-03, - 2DIAGNOSTIC, 37, -6.200163092612e-01, 6.773337117183e-06, 2.6931e-01, 3.3572e-03, - 2DIAGNOSTIC, 38, -6.199967295956e-01, 2.668366864626e-06, 2.7169e-01, 2.3780e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.846305007616e-01, 1.797693134862e+308, 3.3424e-01, 6.2552e-02, - 2DIAGNOSTIC, 2, -4.850524392347e-01, 1.797693134862e+308, 3.4582e-01, 1.1582e-02, - 2DIAGNOSTIC, 3, -4.856958911265e-01, 1.797693134862e+308, 3.5763e-01, 1.1802e-02, - 2DIAGNOSTIC, 4, -4.870625947520e-01, 1.797693134862e+308, 3.6981e-01, 1.2182e-02, - 2DIAGNOSTIC, 5, -4.886490122537e-01, 1.797693134862e+308, 3.8231e-01, 1.2503e-02, - 2DIAGNOSTIC, 6, -4.896070161572e-01, 1.797693134862e+308, 3.9432e-01, 1.2005e-02, - 2DIAGNOSTIC, 7, -4.916936057089e-01, 1.797693134862e+308, 4.0778e-01, 1.3460e-02, - 2DIAGNOSTIC, 8, -4.918695192042e-01, 1.797693134862e+308, 4.2293e-01, 1.5159e-02, - 2DIAGNOSTIC, 9, -4.919176870725e-01, 1.797693134862e+308, 4.3875e-01, 1.5819e-02, - 2DIAGNOSTIC, 10, -4.920527808177e-01, 1.170355314312e-03, 4.5271e-01, 1.3960e-02, - 2DIAGNOSTIC, 11, -4.921093429507e-01, 9.467249125765e-04, 4.6491e-01, 1.2199e-02, - 2DIAGNOSTIC, 12, -4.921203421299e-01, 6.962290520195e-04, 4.7695e-01, 1.2042e-02, - 2DIAGNOSTIC, 13, -4.921345957140e-01, 4.506693821991e-04, 4.8908e-01, 1.2123e-02, - 2DIAGNOSTIC, 14, -4.921658773241e-01, 2.575575128313e-04, 5.0247e-01, 1.3392e-02, - 2DIAGNOSTIC, 15, -4.921970933463e-01, 1.294703941480e-04, 5.1572e-01, 1.3247e-02, - 2DIAGNOSTIC, 16, -4.921875748501e-01, 3.803998136957e-05, 5.2897e-01, 1.3249e-02, - 2DIAGNOSTIC, 17, -4.921979482992e-01, 2.555683040548e-05, 5.4061e-01, 1.1643e-02, - 2DIAGNOSTIC, 18, -4.922107911809e-01, 1.838559894569e-05, 5.5406e-01, 1.3448e-02, - 2DIAGNOSTIC, 19, -4.922293035041e-01, 1.234146467625e-05, 5.6918e-01, 1.5125e-02, - 2DIAGNOSTIC, 20, -4.922385271894e-01, 1.003444980394e-05, 5.8000e-01, 1.0819e-02, - 2DIAGNOSTIC, 21, -4.922514683185e-01, 9.094176675786e-06, 5.9066e-01, 1.0663e-02, - 2DIAGNOSTIC, 22, -4.923204890650e-01, 9.648039676360e-06, 6.0573e-01, 1.5066e-02, - 2DIAGNOSTIC, 23, -4.923924484883e-01, 1.149026361942e-05, 6.2093e-01, 1.5197e-02, - 2DIAGNOSTIC, 24, -4.923990545282e-01, 1.309138099644e-05, 6.3399e-01, 1.3066e-02, - 2DIAGNOSTIC, 25, -4.923991075555e-01, 1.423334959125e-05, 6.4578e-01, 1.1787e-02, - 2DIAGNOSTIC, 26, -4.923991431727e-01, 1.387753679933e-05, 6.5664e-01, 1.0856e-02, - 2DIAGNOSTIC, 27, -4.924022567133e-01, 1.261646171163e-05, 6.6713e-01, 1.0496e-02, - 2DIAGNOSTIC, 28, -4.924021900035e-01, 1.059427229440e-05, 6.7774e-01, 1.0606e-02, - 2DIAGNOSTIC, 29, -4.924047087439e-01, 8.252226764829e-06, 6.8922e-01, 1.1481e-02, - 2DIAGNOSTIC, 30, -4.923979578497e-01, 5.468810941926e-06, 7.0002e-01, 1.0797e-02, - 2DIAGNOSTIC, 31, -4.924057524359e-01, 2.820625377958e-06, 7.0998e-01, 9.9602e-03, - 2DIAGNOSTIC, 32, -4.924228386051e-01, 1.683901075585e-06, 7.2222e-01, 1.2244e-02, - 2DIAGNOSTIC, 33, -4.924195702461e-01, 1.742825077894e-06, 7.3213e-01, 9.9099e-03, - 2DIAGNOSTIC, 34, -4.924224644725e-01, 1.894010439454e-06, 7.4331e-01, 1.1184e-02, - 2DIAGNOSTIC, 35, -4.924296883430e-01, 2.070354310633e-06, 7.5570e-01, 1.2388e-02, - 2DIAGNOSTIC, 36, -4.924233560058e-01, 2.018315991767e-06, 7.6585e-01, 1.0150e-02, - 2DIAGNOSTIC, 37, -4.924211310523e-01, 1.874130521017e-06, 7.8030e-01, 1.4446e-02, - 2DIAGNOSTIC, 38, -4.924237184377e-01, 1.680371960650e-06, 7.9062e-01, 1.0325e-02, - 2DIAGNOSTIC, 39, -4.924233119914e-01, 1.452122500366e-06, 8.0380e-01, 1.3182e-02, - 2DIAGNOSTIC, 40, -4.924242291889e-01, 1.087921631230e-06, 8.1652e-01, 1.2719e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.197812427841e-01, 1.797693134862e+308, 1.0259e+00, 2.0933e-01, - Elapsed time (stage 0): 1.0509e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.443089223476e-01, 1.797693134862e+308, 4.1825e-02, 4.1825e-02, - 2DIAGNOSTIC, 2, -9.469084822818e-01, 1.797693134862e+308, 4.3268e-02, 1.4431e-03, - 2DIAGNOSTIC, 3, -9.509665644635e-01, 1.797693134862e+308, 4.4777e-02, 1.5090e-03, - 2DIAGNOSTIC, 4, -9.570413647419e-01, 1.797693134862e+308, 4.6282e-02, 1.5051e-03, - 2DIAGNOSTIC, 5, -9.635764979685e-01, 1.797693134862e+308, 4.7790e-02, 1.5080e-03, - 2DIAGNOSTIC, 6, -9.891488723308e-01, 1.797693134862e+308, 4.9574e-02, 1.7841e-03, - 2DIAGNOSTIC, 7, -1.014109944328e+00, 1.797693134862e+308, 5.1371e-02, 1.7970e-03, - 2DIAGNOSTIC, 8, -1.026438169448e+00, 1.797693134862e+308, 5.3138e-02, 1.7669e-03, - 2DIAGNOSTIC, 9, -1.036295823520e+00, 1.797693134862e+308, 5.5576e-02, 2.4381e-03, - 2DIAGNOSTIC, 10, -1.036388469922e+00, 7.321526238695e-03, 5.7639e-02, 2.0630e-03, - 2DIAGNOSTIC, 11, -1.036742335417e+00, 6.613567589186e-03, 5.9390e-02, 1.7509e-03, - 2DIAGNOSTIC, 12, -1.037012348074e+00, 5.497997741961e-03, 6.1167e-02, 1.7769e-03, - 2DIAGNOSTIC, 13, -1.037826685554e+00, 4.172212843820e-03, 6.2917e-02, 1.7500e-03, - 2DIAGNOSTIC, 14, -1.038727709165e+00, 2.812517860249e-03, 6.4949e-02, 2.0318e-03, - 2DIAGNOSTIC, 15, -1.038592439595e+00, 1.500044746300e-03, 6.6739e-02, 1.7900e-03, - 2DIAGNOSTIC, 16, -1.040064589510e+00, 6.906757884985e-04, 6.9561e-02, 2.8219e-03, - 2DIAGNOSTIC, 17, -1.041210957024e+00, 3.448267457755e-04, 7.2152e-02, 2.5909e-03, - 2DIAGNOSTIC, 18, -1.040374841201e+00, 1.818152958646e-04, 7.5509e-02, 3.3569e-03, - 2DIAGNOSTIC, 19, -1.040375776507e+00, 1.663518571743e-04, 7.7366e-02, 1.8570e-03, - 2DIAGNOSTIC, 20, -1.040386219881e+00, 1.387637142499e-04, 7.9138e-02, 1.7719e-03, - 2DIAGNOSTIC, 21, -1.040403346835e+00, 1.057197202649e-04, 8.0907e-02, 1.7691e-03, - 2DIAGNOSTIC, 22, -1.040430571157e+00, 6.935353713127e-05, 8.2717e-02, 1.8098e-03, - 2DIAGNOSTIC, 23, -1.040470534122e+00, 4.033877521094e-05, 8.4692e-02, 1.9751e-03, - 2DIAGNOSTIC, 24, -1.040526714933e+00, 2.179182707229e-05, 8.6736e-02, 2.0440e-03, - 2DIAGNOSTIC, 25, -1.040599277069e+00, 1.663962450223e-06, 8.8810e-02, 2.0740e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.671164602291e-01, 1.797693134862e+308, 1.3194e-01, 4.3128e-02, - 2DIAGNOSTIC, 2, -6.671093222591e-01, 1.797693134862e+308, 1.3442e-01, 2.4850e-03, - 2DIAGNOSTIC, 3, -6.686321170461e-01, 1.797693134862e+308, 1.3693e-01, 2.5048e-03, - 2DIAGNOSTIC, 4, -6.712465811087e-01, 1.797693134862e+308, 1.3946e-01, 2.5342e-03, - 2DIAGNOSTIC, 5, -6.763365094211e-01, 1.797693134862e+308, 1.4166e-01, 2.1992e-03, - 2DIAGNOSTIC, 6, -6.829104066936e-01, 1.797693134862e+308, 1.4371e-01, 2.0530e-03, - 2DIAGNOSTIC, 7, -7.085652321793e-01, 1.797693134862e+308, 1.4629e-01, 2.5749e-03, - 2DIAGNOSTIC, 8, -7.203830071001e-01, 1.797693134862e+308, 1.4889e-01, 2.5980e-03, - 2DIAGNOSTIC, 9, -7.243903605057e-01, 1.797693134862e+308, 1.5159e-01, 2.7020e-03, - 2DIAGNOSTIC, 10, -7.275767868704e-01, 6.799636809356e-03, 1.5386e-01, 2.2681e-03, - 2DIAGNOSTIC, 11, -7.307260160226e-01, 6.591470280028e-03, 1.5651e-01, 2.6560e-03, - 2DIAGNOSTIC, 12, -7.321690914034e-01, 5.864949324029e-03, 1.5885e-01, 2.3351e-03, - 2DIAGNOSTIC, 13, -7.336918097601e-01, 4.816845958575e-03, 1.6147e-01, 2.6171e-03, - 2DIAGNOSTIC, 14, -7.349489131070e-01, 3.607762886832e-03, 1.6471e-01, 3.2439e-03, - 2DIAGNOSTIC, 15, -7.348441677138e-01, 2.378827485838e-03, 1.6736e-01, 2.6550e-03, - 2DIAGNOSTIC, 16, -7.355266065150e-01, 1.260364626021e-03, 1.7004e-01, 2.6710e-03, - 2DIAGNOSTIC, 17, -7.358344027121e-01, 7.684776472801e-04, 1.7237e-01, 2.3339e-03, - 2DIAGNOSTIC, 18, -7.359970488605e-01, 5.273865313368e-04, 1.7498e-01, 2.6109e-03, - 2DIAGNOSTIC, 19, -7.362056140375e-01, 3.515482974975e-04, 1.7784e-01, 2.8598e-03, - 2DIAGNOSTIC, 20, -7.362664742291e-01, 2.250837763371e-04, 1.8022e-01, 2.3849e-03, - 2DIAGNOSTIC, 21, -7.363628442632e-01, 1.515461514528e-04, 1.8339e-01, 3.1641e-03, - 2DIAGNOSTIC, 22, -7.368470509319e-01, 1.050472358489e-04, 1.8650e-01, 3.1140e-03, - 2DIAGNOSTIC, 23, -7.387372824966e-01, 1.111765392403e-04, 1.9023e-01, 3.7279e-03, - 2DIAGNOSTIC, 24, -7.391929170016e-01, 1.342098992298e-04, 1.9294e-01, 2.7130e-03, - 2DIAGNOSTIC, 25, -7.393609442765e-01, 1.439230759154e-04, 1.9577e-01, 2.8229e-03, - 2DIAGNOSTIC, 26, -7.396596245630e-01, 1.547565407880e-04, 1.9925e-01, 3.4850e-03, - 2DIAGNOSTIC, 27, -7.396652015807e-01, 1.546734460332e-04, 2.0236e-01, 3.1049e-03, - 2DIAGNOSTIC, 28, -7.397421599895e-01, 1.430477670327e-04, 2.0534e-01, 2.9881e-03, - 2DIAGNOSTIC, 29, -7.397559892374e-01, 1.218071638127e-04, 2.0793e-01, 2.5871e-03, - 2DIAGNOSTIC, 30, -7.398526549885e-01, 9.306326573834e-05, 2.1052e-01, 2.5899e-03, - 2DIAGNOSTIC, 31, -7.399942582634e-01, 6.065809771653e-05, 2.1335e-01, 2.8269e-03, - 2DIAGNOSTIC, 32, -7.400490296100e-01, 3.068903762337e-05, 2.1617e-01, 2.8210e-03, - 2DIAGNOSTIC, 33, -7.400681446924e-01, 2.243061538325e-05, 2.1895e-01, 2.7781e-03, - 2DIAGNOSTIC, 34, -7.400081857558e-01, 1.720867403484e-05, 2.2143e-01, 2.4798e-03, - 2DIAGNOSTIC, 35, -7.400161807249e-01, 1.264754133853e-05, 2.2388e-01, 2.4481e-03, - 2DIAGNOSTIC, 36, -7.400894698594e-01, 1.125501758742e-05, 2.2631e-01, 2.4331e-03, - 2DIAGNOSTIC, 37, -7.401538087870e-01, 9.642533070280e-06, 2.2908e-01, 2.7702e-03, - 2DIAGNOSTIC, 38, -7.402980148896e-01, 9.582167704147e-06, 2.3184e-01, 2.7621e-03, - 2DIAGNOSTIC, 39, -7.401171574064e-01, 7.002638898326e-06, 2.3460e-01, 2.7559e-03, - 2DIAGNOSTIC, 40, -7.402657003299e-01, 6.410976867197e-06, 2.3735e-01, 2.7518e-03, - 2DIAGNOSTIC, 41, -7.403491168590e-01, 7.385799847055e-06, 2.4015e-01, 2.8000e-03, - 2DIAGNOSTIC, 42, -7.403598990811e-01, 8.232744274819e-06, 2.4262e-01, 2.4748e-03, - 2DIAGNOSTIC, 43, -7.403298502056e-01, 8.265266982183e-06, 2.4509e-01, 2.4691e-03, - 2DIAGNOSTIC, 44, -7.403672949369e-01, 7.431835320065e-06, 2.4785e-01, 2.7580e-03, - 2DIAGNOSTIC, 45, -7.405015791910e-01, 7.209887233073e-06, 2.5025e-01, 2.4040e-03, - 2DIAGNOSTIC, 46, -7.418905340045e-01, 1.870781019194e-05, 2.5334e-01, 3.0890e-03, - 2DIAGNOSTIC, 47, -7.422928278271e-01, 3.151097958993e-05, 2.5609e-01, 2.7490e-03, - 2DIAGNOSTIC, 48, -7.424287289204e-01, 4.322619837011e-05, 2.5855e-01, 2.4531e-03, - 2DIAGNOSTIC, 49, -7.429536702743e-01, 5.327052809027e-05, 2.6145e-01, 2.9042e-03, - 2DIAGNOSTIC, 50, -7.440392921424e-01, 6.734703272096e-05, 2.6651e-01, 5.0600e-03, - 2DIAGNOSTIC, 51, -7.444057274881e-01, 7.753525470196e-05, 2.6969e-01, 3.1841e-03, - 2DIAGNOSTIC, 52, -7.453348184871e-01, 8.700083881183e-05, 2.7207e-01, 2.3770e-03, - 2DIAGNOSTIC, 53, -7.459739523807e-01, 9.238192801641e-05, 2.7449e-01, 2.4240e-03, - 2DIAGNOSTIC, 54, -7.463879657408e-01, 9.203955373115e-05, 2.7694e-01, 2.4438e-03, - 2DIAGNOSTIC, 55, -7.469033859843e-01, 8.721753072951e-05, 2.8027e-01, 3.3269e-03, - 2DIAGNOSTIC, 56, -7.471880182430e-01, 8.576934131946e-05, 2.8265e-01, 2.3892e-03, - 2DIAGNOSTIC, 57, -7.475293644310e-01, 8.129596588123e-05, 2.8506e-01, 2.4068e-03, - 2DIAGNOSTIC, 58, -7.484038610901e-01, 7.592271522203e-05, 2.8776e-01, 2.6999e-03, - 2DIAGNOSTIC, 59, -7.493328982016e-01, 7.280098234486e-05, 2.9044e-01, 2.6801e-03, - 2DIAGNOSTIC, 60, -7.499420600202e-01, 7.373175345262e-05, 2.9281e-01, 2.3670e-03, - 2DIAGNOSTIC, 61, -7.509854924743e-01, 7.647947621415e-05, 2.9606e-01, 3.2530e-03, - 2DIAGNOSTIC, 62, -7.512677765838e-01, 7.926652789478e-05, 2.9873e-01, 2.6681e-03, - 2DIAGNOSTIC, 63, -7.516169664651e-01, 8.042880444441e-05, 3.0142e-01, 2.6948e-03, - 2DIAGNOSTIC, 64, -7.518747727058e-01, 7.782881117964e-05, 3.0407e-01, 2.6429e-03, - 2DIAGNOSTIC, 65, -7.521616721538e-01, 7.261136629174e-05, 3.0755e-01, 3.4850e-03, - 2DIAGNOSTIC, 66, -7.522660508505e-01, 6.286778227969e-05, 3.1069e-01, 3.1412e-03, - 2DIAGNOSTIC, 67, -7.523149181416e-01, 4.961482005345e-05, 3.1384e-01, 3.1459e-03, - 2DIAGNOSTIC, 68, -7.523094459965e-01, 3.694010058768e-05, 3.1692e-01, 3.0830e-03, - 2DIAGNOSTIC, 69, -7.522557891397e-01, 2.600901526473e-05, 3.1972e-01, 2.7969e-03, - 2DIAGNOSTIC, 70, -7.522328568420e-01, 1.603728312082e-05, 3.2216e-01, 2.4421e-03, - 2DIAGNOSTIC, 71, -7.522154374051e-01, 1.042179648810e-05, 3.2463e-01, 2.4669e-03, - 2DIAGNOSTIC, 72, -7.522386986076e-01, 5.622881226391e-06, 3.2737e-01, 2.7392e-03, - 2DIAGNOSTIC, 73, -7.522650038434e-01, 2.428642791057e-06, 3.2980e-01, 2.4309e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.685668184698e-01, 1.797693134862e+308, 3.9380e-01, 6.3999e-02, - 2DIAGNOSTIC, 2, -5.692558711188e-01, 1.797693134862e+308, 4.0613e-01, 1.2330e-02, - 2DIAGNOSTIC, 3, -5.703407586455e-01, 1.797693134862e+308, 4.1765e-01, 1.1520e-02, - 2DIAGNOSTIC, 4, -5.720466682472e-01, 1.797693134862e+308, 4.2912e-01, 1.1470e-02, - 2DIAGNOSTIC, 5, -5.734480984928e-01, 1.797693134862e+308, 4.4032e-01, 1.1207e-02, - 2DIAGNOSTIC, 6, -5.745113069332e-01, 1.797693134862e+308, 4.5175e-01, 1.1424e-02, - 2DIAGNOSTIC, 7, -5.757160578551e-01, 1.797693134862e+308, 4.6332e-01, 1.1570e-02, - 2DIAGNOSTIC, 8, -5.779833691572e-01, 1.797693134862e+308, 4.7930e-01, 1.5985e-02, - 2DIAGNOSTIC, 9, -5.786842080603e-01, 1.797693134862e+308, 4.9430e-01, 1.5002e-02, - 2DIAGNOSTIC, 10, -5.789463320222e-01, 1.284271866139e-03, 5.0651e-01, 1.2206e-02, - 2DIAGNOSTIC, 11, -5.802804493921e-01, 1.150523985914e-03, 5.1876e-01, 1.2249e-02, - 2DIAGNOSTIC, 12, -5.821039215443e-01, 1.037853795391e-03, 5.3159e-01, 1.2833e-02, - 2DIAGNOSTIC, 13, -5.838285981478e-01, 9.523133785716e-04, 5.4411e-01, 1.2521e-02, - 2DIAGNOSTIC, 14, -5.852801437258e-01, 9.027840891248e-04, 5.5583e-01, 1.1714e-02, - 2DIAGNOSTIC, 15, -5.863782540090e-01, 8.603715444521e-04, 5.6737e-01, 1.1545e-02, - 2DIAGNOSTIC, 16, -5.880399713918e-01, 8.279807197203e-04, 5.8323e-01, 1.5858e-02, - 2DIAGNOSTIC, 17, -5.899847532440e-01, 8.113290039873e-04, 5.9770e-01, 1.4474e-02, - 2DIAGNOSTIC, 18, -5.912009701593e-01, 8.152574625071e-04, 6.1049e-01, 1.2783e-02, - 2DIAGNOSTIC, 19, -5.917887594152e-01, 7.771524874804e-04, 6.2347e-01, 1.2985e-02, - 2DIAGNOSTIC, 20, -5.919578140296e-01, 6.817656586803e-04, 6.3720e-01, 1.3731e-02, - 2DIAGNOSTIC, 21, -5.921147098614e-01, 5.664652145609e-04, 6.4852e-01, 1.1317e-02, - 2DIAGNOSTIC, 22, -5.923289185484e-01, 4.532689852059e-04, 6.6138e-01, 1.2856e-02, - 2DIAGNOSTIC, 23, -5.925270747768e-01, 3.479727439387e-04, 6.7297e-01, 1.1594e-02, - 2DIAGNOSTIC, 24, -5.935689471950e-01, 2.699037472720e-04, 6.8597e-01, 1.2997e-02, - 2DIAGNOSTIC, 25, -5.940374382581e-01, 2.028757287104e-04, 6.9937e-01, 1.3407e-02, - 2DIAGNOSTIC, 26, -5.942611886405e-01, 1.568536213451e-04, 7.1212e-01, 1.2741e-02, - 2DIAGNOSTIC, 27, -5.945033105517e-01, 1.388332487448e-04, 7.2478e-01, 1.2668e-02, - 2DIAGNOSTIC, 28, -5.949228643401e-01, 1.372715356912e-04, 7.3879e-01, 1.4011e-02, - 2DIAGNOSTIC, 29, -5.950816738332e-01, 1.350684143845e-04, 7.5539e-01, 1.6592e-02, - 2DIAGNOSTIC, 30, -5.951429230920e-01, 1.239742716720e-04, 7.6716e-01, 1.1773e-02, - 2DIAGNOSTIC, 31, -5.952220696933e-01, 1.058940852886e-04, 7.7869e-01, 1.1526e-02, - 2DIAGNOSTIC, 32, -5.952935331698e-01, 8.350223262570e-05, 7.9007e-01, 1.1387e-02, - 2DIAGNOSTIC, 33, -5.954015250981e-01, 5.873844598273e-05, 8.0245e-01, 1.2382e-02, - 2DIAGNOSTIC, 34, -5.954676352661e-01, 4.559916969150e-05, 8.1565e-01, 1.3198e-02, - 2DIAGNOSTIC, 35, -5.956461240244e-01, 3.796721845712e-05, 8.3184e-01, 1.6189e-02, - 2DIAGNOSTIC, 36, -5.957371147534e-01, 3.142989309003e-05, 8.4636e-01, 1.4515e-02, - 2DIAGNOSTIC, 37, -5.957448873236e-01, 2.548072535848e-05, 8.5786e-01, 1.1500e-02, - 2DIAGNOSTIC, 38, -5.957572719965e-01, 2.299441725068e-05, 8.6947e-01, 1.1610e-02, - 2DIAGNOSTIC, 39, -5.957753647495e-01, 2.071473226825e-05, 8.8151e-01, 1.2039e-02, - 2DIAGNOSTIC, 40, -5.958066248616e-01, 1.773097659569e-05, 8.9489e-01, 1.3380e-02, - 2DIAGNOSTIC, 41, -5.958549849562e-01, 1.475573485950e-05, 9.0682e-01, 1.1938e-02, - 2DIAGNOSTIC, 42, -5.959211903327e-01, 1.216773031936e-05, 9.2616e-01, 1.9334e-02, - 2DIAGNOSTIC, 43, -5.959495811468e-01, 1.015245409120e-05, 9.3869e-01, 1.2532e-02, - 2DIAGNOSTIC, 44, -5.959759876371e-01, 8.307610596642e-06, 9.5033e-01, 1.1635e-02, - 2DIAGNOSTIC, 45, -5.960173583966e-01, 8.154793257859e-06, 9.6206e-01, 1.1740e-02, - 2DIAGNOSTIC, 46, -5.961240368111e-01, 9.357227637528e-06, 9.7588e-01, 1.3812e-02, - 2DIAGNOSTIC, 47, -5.961667738400e-01, 1.016556130873e-05, 9.9471e-01, 1.8831e-02, - 2DIAGNOSTIC, 48, -5.962035369113e-01, 1.053164631657e-05, 1.0070e+00, 1.2334e-02, - 2DIAGNOSTIC, 49, -5.962149297690e-01, 1.024066424362e-05, 1.0198e+00, 1.2763e-02, - 2DIAGNOSTIC, 50, -5.962521151346e-01, 9.698230141509e-06, 1.0323e+00, 1.2482e-02, - 2DIAGNOSTIC, 51, -5.963185511441e-01, 9.360734771955e-06, 1.0504e+00, 1.8142e-02, - 2DIAGNOSTIC, 52, -5.963386515746e-01, 8.977377315630e-06, 1.0637e+00, 1.3234e-02, - 2DIAGNOSTIC, 53, -5.963824673640e-01, 8.476765795327e-06, 1.0763e+00, 1.2644e-02, - 2DIAGNOSTIC, 54, -5.964251402102e-01, 7.859461398259e-06, 1.0902e+00, 1.3876e-02, - 2DIAGNOSTIC, 55, -5.964454338195e-01, 7.079220771734e-06, 1.1027e+00, 1.2521e-02, - 2DIAGNOSTIC, 56, -5.964573659307e-01, 6.712467527044e-06, 1.1152e+00, 1.2482e-02, - 2DIAGNOSTIC, 57, -5.964703303574e-01, 6.235600433210e-06, 1.1295e+00, 1.4342e-02, - 2DIAGNOSTIC, 58, -5.964845458123e-01, 5.656199030282e-06, 1.1487e+00, 1.9188e-02, - 2DIAGNOSTIC, 59, -5.964861298024e-01, 4.704226127632e-06, 1.1632e+00, 1.4514e-02, - 2DIAGNOSTIC, 60, -5.964888645378e-01, 3.695228243224e-06, 1.1761e+00, 1.2886e-02, - 2DIAGNOSTIC, 61, -5.964903233182e-01, 2.955213879229e-06, 1.1891e+00, 1.2961e-02, - 2DIAGNOSTIC, 62, -5.964951818146e-01, 2.193800294523e-06, 1.2016e+00, 1.2558e-02, - 2DIAGNOSTIC, 63, -5.965014754707e-01, 1.669325182040e-06, 1.2137e+00, 1.2054e-02, - 2DIAGNOSTIC, 64, -5.965067593053e-01, 1.407073909263e-06, 1.2257e+00, 1.1991e-02, - 2DIAGNOSTIC, 65, -5.965123194800e-01, 1.257022469888e-06, 1.2385e+00, 1.2771e-02, - 2DIAGNOSTIC, 66, -5.965252465831e-01, 1.217572784148e-06, 1.2510e+00, 1.2513e-02, - 2DIAGNOSTIC, 67, -5.965539291410e-01, 1.402904165088e-06, 1.2726e+00, 2.1612e-02, - 2DIAGNOSTIC, 68, -5.965573888698e-01, 1.613673769302e-06, 1.2872e+00, 1.4619e-02, - 2DIAGNOSTIC, 69, -5.965578461083e-01, 1.724842313521e-06, 1.2998e+00, 1.2653e-02, - 2DIAGNOSTIC, 70, -5.965590837498e-01, 1.741747116871e-06, 1.3124e+00, 1.2563e-02, - 2DIAGNOSTIC, 71, -5.965637316016e-01, 1.673740962514e-06, 1.3261e+00, 1.3652e-02, - 2DIAGNOSTIC, 72, -5.965645677403e-01, 1.523252314700e-06, 1.3393e+00, 1.3282e-02, - 2DIAGNOSTIC, 73, -5.965647091490e-01, 1.315386523227e-06, 1.3801e+00, 4.0795e-02, - 2DIAGNOSTIC, 74, -5.965647091389e-01, 1.066351559463e-06, 1.4206e+00, 4.0490e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.025363823093e-01, 1.797693134862e+308, 1.6168e+00, 1.9612e-01, - Elapsed time (stage 1): 1.6425e+00 - - -Total elapsed time: 2.6948e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:03:39 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 40 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 102 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 88.02% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 88.02% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[18134 3458 208 193 427 1290 8550 783 898 0 0 956 - 0 417 0 213 334 1063 486 783 726 247 0 379 - 240 0 0 0 0 0 0 0 0 0 216 0 - 0 0 0 0] -[150222 86742 23982 28823 29496 21822 19861 13966 13170 12101 - 13967 12178 13432 11075 12572 4758 10601 3712 2789 3141 - 987 2371 1917 1948 1089 1689 1669 2991 1059 1073 - 953 1547 890 490 524 744 1222 1137 401 0] -[ 0 8489 0 0 0 0 12512 451 0 5135 0 0 - 0 5676 1857 441 0 295 0 0 0 7321 0 0 - 9992 469 0 218 0 10259 6329 0 0 0 0 0 - 0 0 8828 0] -[ 1957 453 7113 6114 1332 2222 455 16651 6089 280 - 1078 5224 2239 894 1873 7536 1592 26488 6399 18246 - 5761 205 6412 2532 108458 2989 1263 2118 11611 143480 - 3399 2688 7792 3037 3484 3004 1794 2334 211 1746] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:12:58 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:13:05 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:16:55 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:16:55 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:16:56 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:17:06 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:17:10 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC005 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:17:23 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:17:49 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:19:39 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:19:41 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:21:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:21:00 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55a666d2cd20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [73.2585, 111.949, -124.971] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a666ba3730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5f74d50010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55a666d30020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 61.8168, -102.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a666d360c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5f71691010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55a666d46840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [73.2585, 111.949, -124.971] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a666d32890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5f6c9bd010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55a666d4a3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 61.8168, -102.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a666d39130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5f692fe010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.056814858544e-01, 1.797693134862e+308, 2.3542e-01, 2.3542e-01, - 2DIAGNOSTIC, 2, -4.078409339347e-01, 1.797693134862e+308, 2.3698e-01, 1.5559e-03, - 2DIAGNOSTIC, 3, -4.107351280814e-01, 1.797693134862e+308, 2.3847e-01, 1.4911e-03, - 2DIAGNOSTIC, 4, -4.144113459882e-01, 1.797693134862e+308, 2.3995e-01, 1.4770e-03, - 2DIAGNOSTIC, 5, -4.170352247775e-01, 1.797693134862e+308, 2.4140e-01, 1.4482e-03, - 2DIAGNOSTIC, 6, -4.219020304016e-01, 1.797693134862e+308, 2.4288e-01, 1.4861e-03, - 2DIAGNOSTIC, 7, -4.295545232552e-01, 1.797693134862e+308, 2.4438e-01, 1.4989e-03, - 2DIAGNOSTIC, 8, -4.515560452985e-01, 1.797693134862e+308, 2.4600e-01, 1.6191e-03, - 2DIAGNOSTIC, 9, -5.387124649063e-01, 1.797693134862e+308, 2.4807e-01, 2.0690e-03, - 2DIAGNOSTIC, 10, -5.448685231140e-01, 1.855965521937e-02, 2.5003e-01, 1.9650e-03, - 2DIAGNOSTIC, 11, -5.578362604654e-01, 2.113826803755e-02, 2.5250e-01, 2.4688e-03, - 2DIAGNOSTIC, 12, -5.587304803759e-01, 2.153803316053e-02, 2.5441e-01, 1.9109e-03, - 2DIAGNOSTIC, 13, -5.592461776209e-01, 2.008459877941e-02, 2.5608e-01, 1.6670e-03, - 2DIAGNOSTIC, 14, -5.601263691358e-01, 1.721287245970e-02, 2.5772e-01, 1.6372e-03, - 2DIAGNOSTIC, 15, -5.570876241394e-01, 1.321489877536e-02, 2.5961e-01, 1.8909e-03, - 2DIAGNOSTIC, 16, -5.595390758061e-01, 8.901131872327e-03, 2.6175e-01, 2.1441e-03, - 2DIAGNOSTIC, 17, -5.597051701386e-01, 4.631264266873e-03, 2.6364e-01, 1.8830e-03, - 2DIAGNOSTIC, 18, -5.562481275091e-01, 9.929864356234e-04, 2.6552e-01, 1.8799e-03, - 2DIAGNOSTIC, 19, -5.576645899416e-01, 3.539006078675e-04, 2.6794e-01, 2.4250e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.993097991440e-01, 1.797693134862e+308, 5.1302e-01, 2.4507e-01, - 2DIAGNOSTIC, 2, -3.982232271183e-01, 1.797693134862e+308, 5.1522e-01, 2.2001e-03, - 2DIAGNOSTIC, 3, -4.006720662887e-01, 1.797693134862e+308, 5.1728e-01, 2.0661e-03, - 2DIAGNOSTIC, 4, -4.035244421000e-01, 1.797693134862e+308, 5.1959e-01, 2.3041e-03, - 2DIAGNOSTIC, 5, -4.038053160239e-01, 1.797693134862e+308, 5.2290e-01, 3.3181e-03, - 2DIAGNOSTIC, 6, -4.038293680049e-01, 1.797693134862e+308, 5.2518e-01, 2.2762e-03, - 2DIAGNOSTIC, 7, -4.037971335267e-01, 1.797693134862e+308, 5.2714e-01, 1.9550e-03, - 2DIAGNOSTIC, 8, -4.037758458107e-01, 1.797693134862e+308, 5.2937e-01, 2.2321e-03, - 2DIAGNOSTIC, 9, -4.038005722596e-01, 1.797693134862e+308, 5.3129e-01, 1.9200e-03, - 2DIAGNOSTIC, 10, -4.031780574221e-01, 7.837386136994e-04, 5.3357e-01, 2.2812e-03, - 2DIAGNOSTIC, 11, -4.033008135890e-01, 4.806120742189e-04, 5.3618e-01, 2.6131e-03, - 2DIAGNOSTIC, 12, -4.035391083223e-01, 1.329269041714e-04, 5.3846e-01, 2.2728e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.029659439491e-01, 1.797693134862e+308, 7.9593e-01, 2.5747e-01, - 2DIAGNOSTIC, 2, -3.031672939512e-01, 1.797693134862e+308, 8.0881e-01, 1.2877e-02, - 2DIAGNOSTIC, 3, -3.033414084317e-01, 1.797693134862e+308, 8.2161e-01, 1.2805e-02, - 2DIAGNOSTIC, 4, -3.038521426789e-01, 1.797693134862e+308, 8.3399e-01, 1.2384e-02, - 2DIAGNOSTIC, 5, -3.073819227338e-01, 1.797693134862e+308, 8.4650e-01, 1.2503e-02, - 2DIAGNOSTIC, 6, -3.112900972565e-01, 1.797693134862e+308, 8.6098e-01, 1.4480e-02, - 2DIAGNOSTIC, 7, -3.183199612058e-01, 1.797693134862e+308, 8.7817e-01, 1.7193e-02, - 2DIAGNOSTIC, 8, -3.188663716604e-01, 1.797693134862e+308, 8.9098e-01, 1.2808e-02, - 2DIAGNOSTIC, 9, -3.213867834882e-01, 1.797693134862e+308, 9.0385e-01, 1.2872e-02, - 2DIAGNOSTIC, 10, -3.241605272322e-01, 5.059255486999e-03, 9.1869e-01, 1.4837e-02, - 2DIAGNOSTIC, 11, -3.265707835496e-01, 4.993345533104e-03, 9.3739e-01, 1.8699e-02, - 2DIAGNOSTIC, 12, -3.272197720404e-01, 4.551034900614e-03, 9.4996e-01, 1.2576e-02, - 2DIAGNOSTIC, 13, -3.295466140077e-01, 3.948437385831e-03, 9.6290e-01, 1.2942e-02, - 2DIAGNOSTIC, 14, -3.520009105813e-01, 4.528515901593e-03, 9.7858e-01, 1.5671e-02, - 2DIAGNOSTIC, 15, -3.538879387664e-01, 4.891275151971e-03, 9.9578e-01, 1.7201e-02, - 2DIAGNOSTIC, 16, -3.611137829481e-01, 5.367412207497e-03, 1.0085e+00, 1.2735e-02, - 2DIAGNOSTIC, 17, -3.658116827488e-01, 5.899911669249e-03, 1.0235e+00, 1.5013e-02, - 2DIAGNOSTIC, 18, -3.732072439282e-01, 6.193375642862e-03, 1.0389e+00, 1.5370e-02, - 2DIAGNOSTIC, 19, -3.791323747811e-01, 6.237467368198e-03, 1.0523e+00, 1.3407e-02, - 2DIAGNOSTIC, 20, -3.847421610459e-01, 6.046568474475e-03, 1.0681e+00, 1.5783e-02, - 2DIAGNOSTIC, 21, -4.109005170577e-01, 6.455253306455e-03, 1.0841e+00, 1.5967e-02, - 2DIAGNOSTIC, 22, -4.531495700522e-01, 7.787966554887e-03, 1.1018e+00, 1.7786e-02, - 2DIAGNOSTIC, 23, -4.945632538939e-01, 9.705146946789e-03, 1.1196e+00, 1.7756e-02, - 2DIAGNOSTIC, 24, -5.305565668800e-01, 1.239315335254e-02, 1.1353e+00, 1.5673e-02, - 2DIAGNOSTIC, 25, -5.484930266792e-01, 1.421515144008e-02, 1.1490e+00, 1.3753e-02, - 2DIAGNOSTIC, 26, -5.552546182284e-01, 1.492088849722e-02, 1.1663e+00, 1.7249e-02, - 2DIAGNOSTIC, 27, -5.582794157520e-01, 1.436917857592e-02, 1.1820e+00, 1.5687e-02, - 2DIAGNOSTIC, 28, -5.604302684258e-01, 1.278120807357e-02, 1.1987e+00, 1.6738e-02, - 2DIAGNOSTIC, 29, -5.624610844347e-01, 1.036194231191e-02, 1.2115e+00, 1.2812e-02, - 2DIAGNOSTIC, 30, -5.631501976289e-01, 7.355445370324e-03, 1.2262e+00, 1.4665e-02, - 2DIAGNOSTIC, 31, -5.637418023742e-01, 4.536888033282e-03, 1.2408e+00, 1.4669e-02, - 2DIAGNOSTIC, 32, -5.638773615472e-01, 2.450633486690e-03, 1.2568e+00, 1.5912e-02, - 2DIAGNOSTIC, 33, -5.638843285349e-01, 1.157986545505e-03, 1.2743e+00, 1.7572e-02, - 2DIAGNOSTIC, 34, -5.638791863322e-01, 5.735773320426e-04, 1.2904e+00, 1.6041e-02, - 2DIAGNOSTIC, 35, -5.638888797337e-01, 3.237570131603e-04, 1.3064e+00, 1.6011e-02, - 2DIAGNOSTIC, 36, -5.638818079027e-01, 1.867840365388e-04, 1.3200e+00, 1.3653e-02, - 2DIAGNOSTIC, 37, -5.638721939722e-01, 9.556180371800e-05, 1.3351e+00, 1.5086e-02, - 2DIAGNOSTIC, 38, -5.638836654280e-01, 3.842097701659e-05, 1.3480e+00, 1.2925e-02, - 2DIAGNOSTIC, 39, -5.639264273218e-01, 1.606931053243e-05, 1.3610e+00, 1.2992e-02, - 2DIAGNOSTIC, 40, -5.640264434038e-01, 6.248427685221e-06, 1.3738e+00, 1.2749e-02, - 2DIAGNOSTIC, 41, -5.648347060637e-01, 1.842092704083e-05, 1.3903e+00, 1.6552e-02, - 2DIAGNOSTIC, 42, -5.649072094463e-01, 3.104803231852e-05, 1.4050e+00, 1.4676e-02, - 2DIAGNOSTIC, 43, -5.648852166088e-01, 3.998995120562e-05, 1.4235e+00, 1.8514e-02, - 2DIAGNOSTIC, 44, -5.649233610997e-01, 4.537072584621e-05, 1.4391e+00, 1.5620e-02, - 2DIAGNOSTIC, 45, -5.649653630996e-01, 4.687877889350e-05, 1.4564e+00, 1.7262e-02, - 2DIAGNOSTIC, 46, -5.649588094656e-01, 4.354900694904e-05, 1.4709e+00, 1.4470e-02, - 2DIAGNOSTIC, 47, -5.649498102300e-01, 3.606831036375e-05, 1.4833e+00, 1.2386e-02, - 2DIAGNOSTIC, 48, -5.649412461451e-01, 2.583024737581e-05, 1.4976e+00, 1.4323e-02, - 2DIAGNOSTIC, 49, -5.649176153247e-01, 1.405045661302e-05, 1.5100e+00, 1.2394e-02, - 2DIAGNOSTIC, 50, -5.649077270389e-01, 2.401190605274e-06, 1.5225e+00, 1.2478e-02, - 2DIAGNOSTIC, 51, -5.649378025269e-01, 1.156867593433e-06, 1.5350e+00, 1.2503e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.808535793389e-01, 1.797693134862e+308, 1.9535e+00, 4.1850e-01, - 2DIAGNOSTIC, 2, -4.810510237948e-01, 1.797693134862e+308, 2.0367e+00, 8.3258e-02, - 2DIAGNOSTIC, 3, -4.814801038429e-01, 1.797693134862e+308, 2.1200e+00, 8.3284e-02, - 2DIAGNOSTIC, 4, -4.818211115867e-01, 1.797693134862e+308, 2.2308e+00, 1.1082e-01, - 2DIAGNOSTIC, 5, -4.818501743908e-01, 1.797693134862e+308, 2.3261e+00, 9.5230e-02, - 2DIAGNOSTIC, 6, -4.818697545179e-01, 1.797693134862e+308, 2.4484e+00, 1.2233e-01, - 2DIAGNOSTIC, 7, -4.818748609915e-01, 1.797693134862e+308, 2.5819e+00, 1.3352e-01, - 2DIAGNOSTIC, 8, -4.818738896797e-01, 1.797693134862e+308, 2.6670e+00, 8.5074e-02, - 2DIAGNOSTIC, 9, -4.818716935236e-01, 1.797693134862e+308, 2.7706e+00, 1.0361e-01, - 2DIAGNOSTIC, 10, -4.818706335675e-01, 1.234888849955e-04, 2.8713e+00, 1.0067e-01, - 2DIAGNOSTIC, 11, -4.818695234841e-01, 6.764238104789e-05, 2.9718e+00, 1.0053e-01, - 2DIAGNOSTIC, 12, -4.818671177725e-01, 2.450379624666e-05, 3.0725e+00, 1.0071e-01, - 2DIAGNOSTIC, 13, -4.818659619646e-01, 5.041758916358e-06, 3.1617e+00, 8.9186e-02, - 2DIAGNOSTIC, 14, -4.818648340145e-01, 2.428667070203e-06, 3.2621e+00, 1.0044e-01, - 2DIAGNOSTIC, 15, -4.818649371814e-01, 1.277141214881e-06, 3.3474e+00, 8.5243e-02, - 2DIAGNOSTIC, 16, -4.818638777799e-01, 1.022657577371e-06, 3.4526e+00, 1.0528e-01, - 2DIAGNOSTIC, 17, -4.818641635481e-01, 1.075796369057e-06, 3.5580e+00, 1.0533e-01, - 2DIAGNOSTIC, 18, -4.818631430456e-01, 1.132766707192e-06, 3.6459e+00, 8.7931e-02, - 2DIAGNOSTIC, 19, -4.818635571971e-01, 1.187740105144e-06, 3.7458e+00, 9.9855e-02, - 2DIAGNOSTIC, 20, -4.818639034631e-01, 1.260548335894e-06, 3.8592e+00, 1.1345e-01, - 2DIAGNOSTIC, 21, -4.818627861375e-01, 1.295504826797e-06, 3.9595e+00, 1.0033e-01, - 2DIAGNOSTIC, 22, -4.818616255680e-01, 1.253954840401e-06, 4.0431e+00, 8.3583e-02, - 2DIAGNOSTIC, 23, -4.818618466458e-01, 1.211473420804e-06, 4.1408e+00, 9.7692e-02, - 2DIAGNOSTIC, 24, -4.818622021473e-01, 1.168325097993e-06, 4.2399e+00, 9.9059e-02, - 2DIAGNOSTIC, 25, -4.818627628839e-01, 1.158775943873e-06, 4.3357e+00, 9.5869e-02, - 2DIAGNOSTIC, 26, -4.818633009542e-01, 1.148840668402e-06, 4.4322e+00, 9.6409e-02, - 2DIAGNOSTIC, 27, -4.818615109860e-01, 1.115138163206e-06, 4.5194e+00, 8.7255e-02, - 2DIAGNOSTIC, 28, -4.818628614390e-01, 1.097601467444e-06, 4.6354e+00, 1.1603e-01, - 2DIAGNOSTIC, 29, -4.818687825537e-01, 1.211700272882e-06, 4.7546e+00, 1.1914e-01, - 2DIAGNOSTIC, 30, -4.818692466408e-01, 1.319876927676e-06, 4.8540e+00, 9.9449e-02, - 2DIAGNOSTIC, 31, -4.818670449700e-01, 1.335598651751e-06, 4.9519e+00, 9.7855e-02, - 2DIAGNOSTIC, 32, -4.818648541272e-01, 1.262847285070e-06, 5.0532e+00, 1.0132e-01, - 2DIAGNOSTIC, 33, -4.818678262755e-01, 1.226294591095e-06, 5.1385e+00, 8.5324e-02, - 2DIAGNOSTIC, 34, -4.818659866688e-01, 1.136171667131e-06, 5.2382e+00, 9.9720e-02, - 2DIAGNOSTIC, 35, -4.818692587896e-01, 1.097016751862e-06, 5.3387e+00, 1.0043e-01, - 2DIAGNOSTIC, 36, -4.818689918539e-01, 1.048901651354e-06, 5.4355e+00, 9.6800e-02, - Elapsed time (stage 0): 5.5697e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.110383434187e-01, 1.797693134862e+308, 2.1438e-01, 2.1438e-01, - 2DIAGNOSTIC, 2, -8.134706789923e-01, 1.797693134862e+308, 2.1573e-01, 1.3518e-03, - 2DIAGNOSTIC, 3, -8.177668108413e-01, 1.797693134862e+308, 2.1707e-01, 1.3399e-03, - 2DIAGNOSTIC, 4, -8.247871358466e-01, 1.797693134862e+308, 2.1831e-01, 1.2410e-03, - 2DIAGNOSTIC, 5, -8.333079561810e-01, 1.797693134862e+308, 2.1965e-01, 1.3330e-03, - 2DIAGNOSTIC, 6, -8.457757768021e-01, 1.797693134862e+308, 2.2093e-01, 1.2789e-03, - 2DIAGNOSTIC, 7, -8.658944967440e-01, 1.797693134862e+308, 2.2330e-01, 2.3761e-03, - 2DIAGNOSTIC, 8, -8.695439663826e-01, 1.797693134862e+308, 2.2486e-01, 1.5540e-03, - 2DIAGNOSTIC, 9, -8.708236131606e-01, 1.797693134862e+308, 2.2614e-01, 1.2841e-03, - 2DIAGNOSTIC, 10, -8.750548240884e-01, 5.794460936543e-03, 2.2791e-01, 1.7710e-03, - 2DIAGNOSTIC, 11, -8.769597184262e-01, 5.076546836507e-03, 2.2930e-01, 1.3912e-03, - 2DIAGNOSTIC, 12, -8.780048023411e-01, 4.117551275555e-03, 2.3087e-01, 1.5662e-03, - 2DIAGNOSTIC, 13, -8.794734909928e-01, 3.088627895651e-03, 2.3227e-01, 1.4012e-03, - 2DIAGNOSTIC, 14, -8.819698191368e-01, 2.162065432235e-03, 2.3377e-01, 1.5039e-03, - 2DIAGNOSTIC, 15, -8.848082182736e-01, 1.413713872611e-03, 2.3529e-01, 1.5190e-03, - 2DIAGNOSTIC, 16, -8.907689813995e-01, 1.002005993902e-03, 2.3676e-01, 1.4670e-03, - 2DIAGNOSTIC, 17, -9.029256762390e-01, 1.172674298640e-03, 2.3866e-01, 1.9028e-03, - 2DIAGNOSTIC, 18, -9.244438096680e-01, 1.669959939722e-03, 2.4052e-01, 1.8530e-03, - 2DIAGNOSTIC, 19, -9.292378494279e-01, 2.052792538536e-03, 2.4215e-01, 1.6351e-03, - 2DIAGNOSTIC, 20, -9.315306431891e-01, 2.314692776097e-03, 2.4369e-01, 1.5390e-03, - 2DIAGNOSTIC, 21, -9.330051358606e-01, 2.390732561004e-03, 2.4548e-01, 1.7941e-03, - 2DIAGNOSTIC, 22, -9.370332026066e-01, 2.308248752465e-03, 2.4712e-01, 1.6348e-03, - 2DIAGNOSTIC, 23, -9.565516700049e-01, 2.305072117604e-03, 2.5178e-01, 4.6630e-03, - 2DIAGNOSTIC, 24, -9.565909233514e-01, 2.114763800711e-03, 2.5349e-01, 1.7090e-03, - 2DIAGNOSTIC, 25, -9.568413440323e-01, 1.789961655900e-03, 2.5523e-01, 1.7412e-03, - 2DIAGNOSTIC, 26, -9.572326926257e-01, 1.405567097342e-03, 2.5697e-01, 1.7390e-03, - 2DIAGNOSTIC, 27, -9.577780190064e-01, 1.061879233225e-03, 2.5871e-01, 1.7431e-03, - 2DIAGNOSTIC, 28, -9.577755337246e-01, 8.841663140350e-04, 2.6066e-01, 1.9500e-03, - 2DIAGNOSTIC, 29, -9.582610022499e-01, 6.936379203796e-04, 2.6216e-01, 1.4970e-03, - 2DIAGNOSTIC, 30, -9.580669742902e-01, 4.767994720066e-04, 2.6379e-01, 1.6310e-03, - 2DIAGNOSTIC, 31, -9.584072452846e-01, 2.496585847785e-04, 2.6523e-01, 1.4350e-03, - 2DIAGNOSTIC, 32, -9.580879613209e-01, 4.501875678089e-05, 2.6682e-01, 1.5960e-03, - 2DIAGNOSTIC, 33, -9.583105085481e-01, 3.771235063802e-05, 2.6838e-01, 1.5590e-03, - 2DIAGNOSTIC, 34, -9.579036583561e-01, 2.393666218687e-05, 2.6993e-01, 1.5509e-03, - 2DIAGNOSTIC, 35, -9.583122279149e-01, 1.475998332493e-05, 2.7157e-01, 1.6379e-03, - 2DIAGNOSTIC, 36, -9.593341170722e-01, 1.688546194193e-05, 2.7307e-01, 1.4961e-03, - 2DIAGNOSTIC, 37, -9.598497367872e-01, 2.612464266184e-05, 2.7461e-01, 1.5390e-03, - 2DIAGNOSTIC, 38, -9.602837127917e-01, 3.593439814564e-05, 2.7623e-01, 1.6210e-03, - 2DIAGNOSTIC, 39, -9.591771069103e-01, 3.707157982457e-05, 2.7924e-01, 3.0100e-03, - 2DIAGNOSTIC, 40, -9.588860787716e-01, 3.112886880806e-05, 2.8101e-01, 1.7750e-03, - 2DIAGNOSTIC, 41, -9.584148306201e-01, 2.150828194792e-05, 2.8282e-01, 1.8110e-03, - 2DIAGNOSTIC, 42, -9.591527111474e-01, 1.328930675135e-05, 2.8485e-01, 2.0301e-03, - 2DIAGNOSTIC, 43, -9.592964871210e-01, 6.896087228283e-06, 2.8646e-01, 1.6100e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.781448124840e-01, 1.797693134862e+308, 5.1225e-01, 2.2578e-01, - 2DIAGNOSTIC, 2, -7.776275365041e-01, 1.797693134862e+308, 5.1467e-01, 2.4290e-03, - 2DIAGNOSTIC, 3, -7.806238432883e-01, 1.797693134862e+308, 5.1705e-01, 2.3718e-03, - 2DIAGNOSTIC, 4, -7.843413039041e-01, 1.797693134862e+308, 5.1947e-01, 2.4250e-03, - 2DIAGNOSTIC, 5, -7.862361651669e-01, 1.797693134862e+308, 5.2145e-01, 1.9832e-03, - 2DIAGNOSTIC, 6, -7.880945895969e-01, 1.797693134862e+308, 5.2348e-01, 2.0268e-03, - 2DIAGNOSTIC, 7, -7.905916363519e-01, 1.797693134862e+308, 5.2547e-01, 1.9848e-03, - 2DIAGNOSTIC, 8, -7.946924574657e-01, 1.797693134862e+308, 5.2823e-01, 2.7630e-03, - 2DIAGNOSTIC, 9, -8.040270557883e-01, 1.797693134862e+308, 5.3309e-01, 4.8602e-03, - 2DIAGNOSTIC, 10, -8.042729187279e-01, 2.247459708238e-03, 5.3565e-01, 2.5649e-03, - 2DIAGNOSTIC, 11, -8.044525709440e-01, 2.149821986323e-03, 5.3919e-01, 3.5341e-03, - 2DIAGNOSTIC, 12, -8.044358333984e-01, 1.862787162777e-03, 5.4231e-01, 3.1230e-03, - 2DIAGNOSTIC, 13, -8.046764908751e-01, 1.537677009287e-03, 5.4538e-01, 3.0689e-03, - 2DIAGNOSTIC, 14, -8.048795961466e-01, 1.216360067799e-03, 5.4833e-01, 2.9511e-03, - 2DIAGNOSTIC, 15, -8.054165267254e-01, 8.857303042620e-04, 5.5074e-01, 2.4040e-03, - 2DIAGNOSTIC, 16, -8.063335774992e-01, 5.806241164103e-04, 5.5312e-01, 2.3849e-03, - 2DIAGNOSTIC, 17, -8.078414315542e-01, 3.423967296491e-04, 5.5547e-01, 2.3510e-03, - 2DIAGNOSTIC, 18, -8.095115151546e-01, 2.082374126845e-04, 5.5767e-01, 2.2020e-03, - 2DIAGNOSTIC, 19, -8.118843590393e-01, 2.884581633624e-04, 5.5996e-01, 2.2871e-03, - 2DIAGNOSTIC, 20, -8.141057734609e-01, 3.771028578799e-04, 5.6257e-01, 2.6121e-03, - 2DIAGNOSTIC, 21, -8.167581494649e-01, 4.696901495120e-04, 5.6550e-01, 2.9259e-03, - 2DIAGNOSTIC, 22, -8.181163701114e-01, 5.309748835990e-04, 5.6810e-01, 2.6050e-03, - 2DIAGNOSTIC, 23, -8.185876999842e-01, 5.483293038877e-04, 5.7038e-01, 2.2750e-03, - 2DIAGNOSTIC, 24, -8.188395651439e-01, 5.198750992402e-04, 5.7358e-01, 3.2051e-03, - 2DIAGNOSTIC, 25, -8.203210161118e-01, 4.734304918496e-04, 5.7620e-01, 2.6209e-03, - 2DIAGNOSTIC, 26, -8.204208127902e-01, 3.991005206933e-04, 5.7856e-01, 2.3580e-03, - 2DIAGNOSTIC, 27, -8.205419161079e-01, 3.143032747938e-04, 5.8126e-01, 2.7010e-03, - 2DIAGNOSTIC, 28, -8.202471957729e-01, 2.236646074539e-04, 5.8387e-01, 2.6069e-03, - 2DIAGNOSTIC, 29, -8.209019576906e-01, 1.551487832065e-04, 5.8686e-01, 2.9941e-03, - 2DIAGNOSTIC, 30, -8.206876203633e-01, 9.918845795258e-05, 5.8929e-01, 2.4300e-03, - 2DIAGNOSTIC, 31, -8.207743878728e-01, 6.847601635333e-05, 5.9154e-01, 2.2461e-03, - 2DIAGNOSTIC, 32, -8.208516410576e-01, 4.934333232227e-05, 5.9381e-01, 2.2700e-03, - 2DIAGNOSTIC, 33, -8.209534321206e-01, 3.303071517351e-05, 5.9610e-01, 2.2860e-03, - 2DIAGNOSTIC, 34, -8.211415091075e-01, 1.870176203837e-05, 5.9835e-01, 2.2490e-03, - 2DIAGNOSTIC, 35, -8.214648491023e-01, 2.158520677516e-05, 6.0061e-01, 2.2609e-03, - 2DIAGNOSTIC, 36, -8.215331264623e-01, 2.395864361016e-05, 6.0318e-01, 2.5759e-03, - 2DIAGNOSTIC, 37, -8.214794661058e-01, 2.479960251281e-05, 6.0605e-01, 2.8698e-03, - 2DIAGNOSTIC, 38, -8.214695481845e-01, 2.036103709138e-05, 6.0959e-01, 3.5360e-03, - 2DIAGNOSTIC, 39, -8.212153215199e-01, 1.794329879543e-05, 6.1220e-01, 2.6152e-03, - 2DIAGNOSTIC, 40, -8.212999507595e-01, 1.287733342694e-05, 6.1451e-01, 2.3031e-03, - 2DIAGNOSTIC, 41, -8.210641495626e-01, 5.585557758075e-06, 6.1676e-01, 2.2550e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.839114665760e-01, 1.797693134862e+308, 8.5419e-01, 2.3743e-01, - 2DIAGNOSTIC, 2, -6.850165579338e-01, 1.797693134862e+308, 8.6745e-01, 1.3261e-02, - 2DIAGNOSTIC, 3, -6.863586293111e-01, 1.797693134862e+308, 8.8064e-01, 1.3184e-02, - 2DIAGNOSTIC, 4, -6.877509016364e-01, 1.797693134862e+308, 8.9360e-01, 1.2960e-02, - 2DIAGNOSTIC, 5, -6.894602850248e-01, 1.797693134862e+308, 9.0656e-01, 1.2961e-02, - 2DIAGNOSTIC, 6, -6.912487628427e-01, 1.797693134862e+308, 9.1977e-01, 1.3212e-02, - 2DIAGNOSTIC, 7, -6.927509811356e-01, 1.797693134862e+308, 9.4049e-01, 2.0719e-02, - 2DIAGNOSTIC, 8, -6.933361528024e-01, 1.797693134862e+308, 9.5570e-01, 1.5210e-02, - 2DIAGNOSTIC, 9, -6.934964982191e-01, 1.797693134862e+308, 9.6914e-01, 1.3440e-02, - 2DIAGNOSTIC, 10, -6.937585362699e-01, 1.024462698084e-03, 9.8248e-01, 1.3341e-02, - 2DIAGNOSTIC, 11, -6.944121052521e-01, 8.247277335276e-04, 9.9584e-01, 1.3358e-02, - 2DIAGNOSTIC, 12, -6.952798697291e-01, 6.510151134219e-04, 1.0168e+00, 2.0972e-02, - 2DIAGNOSTIC, 13, -6.953781486197e-01, 4.906572305433e-04, 1.0314e+00, 1.4545e-02, - 2DIAGNOSTIC, 14, -6.954373365829e-01, 3.519242828529e-04, 1.0454e+00, 1.4075e-02, - 2DIAGNOSTIC, 15, -6.956288877759e-01, 2.514859615874e-04, 1.0640e+00, 1.8608e-02, - 2DIAGNOSTIC, 16, -6.959005594820e-01, 1.923753419096e-04, 1.0778e+00, 1.3726e-02, - 2DIAGNOSTIC, 17, -6.963940880286e-01, 1.701554143887e-04, 1.0974e+00, 1.9605e-02, - 2DIAGNOSTIC, 18, -6.966115130390e-01, 1.530972782994e-04, 1.1191e+00, 2.1762e-02, - 2DIAGNOSTIC, 19, -6.964744173166e-01, 1.246891790100e-04, 1.1330e+00, 1.3865e-02, - 2DIAGNOSTIC, 20, -6.966578653014e-01, 9.691731487600e-05, 1.1486e+00, 1.5591e-02, - 2DIAGNOSTIC, 21, -6.968037018579e-01, 7.789001206120e-05, 1.1627e+00, 1.4150e-02, - 2DIAGNOSTIC, 22, -6.970300405290e-01, 7.361523887088e-05, 1.1770e+00, 1.4272e-02, - 2DIAGNOSTIC, 23, -6.973163117142e-01, 6.978654146643e-05, 1.1912e+00, 1.4198e-02, - 2DIAGNOSTIC, 24, -6.975384254402e-01, 6.473194511206e-05, 1.2059e+00, 1.4689e-02, - 2DIAGNOSTIC, 25, -6.978296587789e-01, 6.203270031534e-05, 1.2203e+00, 1.4447e-02, - 2DIAGNOSTIC, 26, -6.983394497734e-01, 6.584362147980e-05, 1.2362e+00, 1.5899e-02, - 2DIAGNOSTIC, 27, -6.988015570206e-01, 7.750818044844e-05, 1.2563e+00, 2.0033e-02, - 2DIAGNOSTIC, 28, -6.988628452019e-01, 8.520712961958e-05, 1.2744e+00, 1.8154e-02, - 2DIAGNOSTIC, 29, -6.988598265465e-01, 8.254695816767e-05, 1.2897e+00, 1.5272e-02, - 2DIAGNOSTIC, 30, -6.990669410983e-01, 7.774597314635e-05, 1.3076e+00, 1.7945e-02, - 2DIAGNOSTIC, 31, -6.991053708351e-01, 6.822289429819e-05, 1.3236e+00, 1.5909e-02, - 2DIAGNOSTIC, 32, -6.990956963015e-01, 5.558283251107e-05, 1.3371e+00, 1.3581e-02, - 2DIAGNOSTIC, 33, -6.991052033145e-01, 4.228715122939e-05, 1.3510e+00, 1.3834e-02, - 2DIAGNOSTIC, 34, -6.991140310657e-01, 2.868902910662e-05, 1.3653e+00, 1.4370e-02, - 2DIAGNOSTIC, 35, -6.991638446938e-01, 1.707998989847e-05, 1.3789e+00, 1.3566e-02, - 2DIAGNOSTIC, 36, -6.992459297252e-01, 1.113115965361e-05, 1.3925e+00, 1.3623e-02, - 2DIAGNOSTIC, 37, -6.993117542439e-01, 1.036206749556e-05, 1.4056e+00, 1.3104e-02, - 2DIAGNOSTIC, 38, -6.995905639753e-01, 1.241824543104e-05, 1.4187e+00, 1.3018e-02, - 2DIAGNOSTIC, 39, -6.999780931352e-01, 1.716889344726e-05, 1.4377e+00, 1.9095e-02, - 2DIAGNOSTIC, 40, -6.999925565619e-01, 2.229364870615e-05, 1.4530e+00, 1.5244e-02, - 2DIAGNOSTIC, 41, -7.000782373018e-01, 2.642722601281e-05, 1.4707e+00, 1.7749e-02, - 2DIAGNOSTIC, 42, -7.000732003223e-01, 2.779275436176e-05, 1.4850e+00, 1.4244e-02, - 2DIAGNOSTIC, 43, -7.002318534120e-01, 2.807739101514e-05, 1.5012e+00, 1.6203e-02, - 2DIAGNOSTIC, 44, -7.003380574539e-01, 2.670906183369e-05, 1.5161e+00, 1.4933e-02, - 2DIAGNOSTIC, 45, -7.003405093951e-01, 2.338918354085e-05, 1.5295e+00, 1.3330e-02, - 2DIAGNOSTIC, 46, -7.005061783099e-01, 2.033257324224e-05, 1.5427e+00, 1.3265e-02, - 2DIAGNOSTIC, 47, -7.006002469593e-01, 1.685547657108e-05, 1.5558e+00, 1.3097e-02, - 2DIAGNOSTIC, 48, -7.007433167762e-01, 1.544878135504e-05, 1.5788e+00, 2.3028e-02, - 2DIAGNOSTIC, 49, -7.007437277288e-01, 1.589616435445e-05, 1.5960e+00, 1.7136e-02, - 2DIAGNOSTIC, 50, -7.007437316708e-01, 1.500091768603e-05, 1.6110e+00, 1.5036e-02, - 2DIAGNOSTIC, 51, -7.007437359047e-01, 1.347302135164e-05, 1.6279e+00, 1.6848e-02, - 2DIAGNOSTIC, 52, -7.007437371476e-01, 1.068567579057e-05, 1.6428e+00, 1.4973e-02, - 2DIAGNOSTIC, 53, -7.007437380539e-01, 8.234804311533e-06, 1.6581e+00, 1.5223e-02, - 2DIAGNOSTIC, 54, -7.007437384402e-01, 5.966653769347e-06, 1.6713e+00, 1.3210e-02, - 2DIAGNOSTIC, 55, -7.007437394765e-01, 3.273987137876e-06, 1.6847e+00, 1.3418e-02, - 2DIAGNOSTIC, 56, -7.007437421338e-01, 1.618448133549e-06, 1.6976e+00, 1.2954e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.898691909939e-01, 1.797693134862e+308, 2.1261e+00, 4.2847e-01, - 2DIAGNOSTIC, 2, -5.907820012944e-01, 1.797693134862e+308, 2.2208e+00, 9.4740e-02, - 2DIAGNOSTIC, 3, -5.917761328907e-01, 1.797693134862e+308, 2.3153e+00, 9.4482e-02, - 2DIAGNOSTIC, 4, -5.927808607549e-01, 1.797693134862e+308, 2.4107e+00, 9.5348e-02, - 2DIAGNOSTIC, 5, -5.932964910244e-01, 1.797693134862e+308, 2.5070e+00, 9.6296e-02, - 2DIAGNOSTIC, 6, -5.935152928834e-01, 1.797693134862e+308, 2.6871e+00, 1.8017e-01, - 2DIAGNOSTIC, 7, -5.935455672748e-01, 1.797693134862e+308, 2.7911e+00, 1.0400e-01, - 2DIAGNOSTIC, 8, -5.936071719148e-01, 1.797693134862e+308, 2.9195e+00, 1.2832e-01, - 2DIAGNOSTIC, 9, -5.936080633856e-01, 1.797693134862e+308, 3.0330e+00, 1.1354e-01, - 2DIAGNOSTIC, 10, -5.936051542724e-01, 3.812542519412e-04, 3.1492e+00, 1.1615e-01, - 2DIAGNOSTIC, 11, -5.936094685883e-01, 2.276518496029e-04, 3.2619e+00, 1.1275e-01, - 2DIAGNOSTIC, 12, -5.936067505213e-01, 1.155084613599e-04, 3.3709e+00, 1.0900e-01, - 2DIAGNOSTIC, 13, -5.935991359054e-01, 4.608839082289e-05, 3.4787e+00, 1.0782e-01, - 2DIAGNOSTIC, 14, -5.936022912773e-01, 1.674407267617e-05, 3.5839e+00, 1.0522e-01, - 2DIAGNOSTIC, 15, -5.936003251944e-01, 6.246221325612e-06, 3.6750e+00, 9.1087e-02, - 2DIAGNOSTIC, 16, -5.935968320016e-01, 3.127598896688e-06, 3.7652e+00, 9.0216e-02, - 2DIAGNOSTIC, 17, -5.935994742532e-01, 1.153858110753e-06, 3.8729e+00, 1.0765e-01, - 2DIAGNOSTIC, 18, -5.936046570509e-01, 1.243799054952e-06, 3.9784e+00, 1.0553e-01, - 2DIAGNOSTIC, 19, -5.936048851203e-01, 1.398642933477e-06, 4.0850e+00, 1.0658e-01, - 2DIAGNOSTIC, 20, -5.936045426085e-01, 1.482294296716e-06, 4.1998e+00, 1.1480e-01, - 2DIAGNOSTIC, 21, -5.936077611461e-01, 1.744404432472e-06, 4.3133e+00, 1.1346e-01, - 2DIAGNOSTIC, 22, -5.936082529653e-01, 1.914614717255e-06, 4.4399e+00, 1.2659e-01, - 2DIAGNOSTIC, 23, -5.936069058327e-01, 1.834362591248e-06, 4.5539e+00, 1.1407e-01, - 2DIAGNOSTIC, 24, -5.936043148427e-01, 1.732498464850e-06, 4.6851e+00, 1.3117e-01, - 2DIAGNOSTIC, 25, -5.936053582987e-01, 1.588241161025e-06, 4.8008e+00, 1.1565e-01, - 2DIAGNOSTIC, 26, -5.936046854027e-01, 1.345978571134e-06, 4.9162e+00, 1.1546e-01, - 2DIAGNOSTIC, 27, -5.936037367494e-01, 1.137111034895e-06, 5.0254e+00, 1.0913e-01, - 2DIAGNOSTIC, 28, -5.936025179295e-01, 1.016787557172e-06, 5.1167e+00, 9.1306e-02, - Elapsed time (stage 1): 5.2545e+00 - - -Total elapsed time: 1.0827e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:21:14 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:21:15 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5601b8a3e4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 61.8168, -102.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5601b8a43fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff9af0c1010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5601b8a3f850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 61.8168, -102.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5601b8a3cf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff9aba02010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5601b8a56b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 61.8168, -102.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5601b8a43550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff9a8343010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5601b8a5bd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 61.8168, -102.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5601b8a59c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff9a4c84010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x5601b8a5df70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 61.8168, -102.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5601b8a5c3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff9a15c5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5601b8a5e540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 61.8168, -102.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5601b8a5e4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff99df06010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.246871224357e-01, 1.797693134862e+308, 2.2054e-01, 2.2054e-01, - 2DIAGNOSTIC, 2, -6.279456412952e-01, 1.797693134862e+308, 2.2291e-01, 2.3668e-03, - 2DIAGNOSTIC, 3, -6.332309122556e-01, 1.797693134862e+308, 2.2514e-01, 2.2280e-03, - 2DIAGNOSTIC, 4, -6.402959502989e-01, 1.797693134862e+308, 2.2733e-01, 2.1939e-03, - 2DIAGNOSTIC, 5, -6.486933273159e-01, 1.797693134862e+308, 2.2936e-01, 2.0339e-03, - 2DIAGNOSTIC, 6, -6.577021850003e-01, 1.797693134862e+308, 2.3171e-01, 2.3489e-03, - 2DIAGNOSTIC, 7, -6.593643796053e-01, 1.797693134862e+308, 2.3394e-01, 2.2249e-03, - 2DIAGNOSTIC, 8, -6.596476330834e-01, 1.797693134862e+308, 2.3592e-01, 1.9791e-03, - 2DIAGNOSTIC, 9, -6.602764644591e-01, 1.797693134862e+308, 2.3790e-01, 1.9860e-03, - 2DIAGNOSTIC, 10, -6.613736463025e-01, 4.124565646366e-03, 2.4068e-01, 2.7728e-03, - 2DIAGNOSTIC, 11, -6.619599595995e-01, 3.110508360658e-03, 2.4315e-01, 2.4791e-03, - 2DIAGNOSTIC, 12, -6.620353298885e-01, 2.112495786514e-03, 2.4539e-01, 2.2330e-03, - 2DIAGNOSTIC, 13, -6.623351120362e-01, 1.269921851414e-03, 2.4788e-01, 2.4900e-03, - 2DIAGNOSTIC, 14, -6.629819001907e-01, 6.712539991373e-04, 2.5031e-01, 2.4371e-03, - 2DIAGNOSTIC, 15, -6.633919812099e-01, 3.406417510338e-04, 2.5329e-01, 2.9771e-03, - 2DIAGNOSTIC, 16, -6.634352887627e-01, 2.659217879413e-04, 2.5582e-01, 2.5291e-03, - 2DIAGNOSTIC, 17, -6.634473763623e-01, 2.193607166632e-04, 2.5813e-01, 2.3060e-03, - 2DIAGNOSTIC, 18, -6.634549885325e-01, 1.650856268254e-04, 2.6079e-01, 2.6619e-03, - 2DIAGNOSTIC, 19, -6.634598002842e-01, 1.151308869765e-04, 2.6321e-01, 2.4190e-03, - 2DIAGNOSTIC, 20, -6.634658417678e-01, 8.318821591220e-05, 2.6592e-01, 2.7170e-03, - 2DIAGNOSTIC, 21, -6.635964915067e-01, 6.173047963040e-05, 2.6854e-01, 2.6200e-03, - 2DIAGNOSTIC, 22, -6.638986653551e-01, 4.410109182207e-05, 2.7558e-01, 7.0310e-03, - 2DIAGNOSTIC, 23, -6.638986446416e-01, 2.930165309371e-05, 2.7773e-01, 2.1560e-03, - 2DIAGNOSTIC, 24, -6.638986639154e-01, 2.470281659178e-05, 2.7996e-01, 2.2240e-03, - 2DIAGNOSTIC, 25, -6.638986964996e-01, 2.543830562505e-05, 2.8214e-01, 2.1889e-03, - 2DIAGNOSTIC, 26, -6.638987515774e-01, 2.450833355572e-05, 2.8524e-01, 3.0930e-03, - 2DIAGNOSTIC, 27, -6.638988446518e-01, 2.156125361753e-05, 2.8837e-01, 3.1300e-03, - 2DIAGNOSTIC, 28, -6.638990018639e-01, 1.704012474785e-05, 2.9151e-01, 3.1450e-03, - 2DIAGNOSTIC, 29, -6.638992672066e-01, 1.150306173028e-05, 2.9473e-01, 3.2210e-03, - 2DIAGNOSTIC, 30, -6.638997142926e-01, 5.447556109511e-06, 2.9712e-01, 2.3890e-03, - 2DIAGNOSTIC, 31, -6.639004648427e-01, 1.081108115239e-06, 2.9962e-01, 2.4960e-03, - 2DIAGNOSTIC, 32, -6.639017113983e-01, 1.078146920248e-06, 3.0211e-01, 2.4960e-03, - 2DIAGNOSTIC, 33, -6.639037813657e-01, 1.094678062107e-06, 3.0455e-01, 2.4309e-03, - 2DIAGNOSTIC, 34, -6.639071905763e-01, 1.141585427848e-06, 3.0693e-01, 2.3839e-03, - 2DIAGNOSTIC, 35, -6.639126951241e-01, 1.234396579099e-06, 3.0937e-01, 2.4412e-03, - 2DIAGNOSTIC, 36, -6.639213112308e-01, 1.394412616089e-06, 3.1177e-01, 2.4040e-03, - 2DIAGNOSTIC, 37, -6.639342423370e-01, 1.647749411172e-06, 3.1436e-01, 2.5830e-03, - 2DIAGNOSTIC, 38, -6.639537061700e-01, 2.033305921148e-06, 3.1690e-01, 2.5451e-03, - 2DIAGNOSTIC, 39, -6.639690364778e-01, 2.454229019913e-06, 3.1917e-01, 2.2659e-03, - 2DIAGNOSTIC, 40, -6.638575923421e-01, 1.501392903804e-06, 3.2147e-01, 2.3000e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.559925787827e-01, 1.797693134862e+308, 5.7741e-01, 2.5594e-01, - 2DIAGNOSTIC, 2, -5.566709573207e-01, 1.797693134862e+308, 5.9305e-01, 1.5639e-02, - 2DIAGNOSTIC, 3, -5.570706624891e-01, 1.797693134862e+308, 6.0791e-01, 1.4862e-02, - 2DIAGNOSTIC, 4, -5.571564536918e-01, 1.797693134862e+308, 6.2292e-01, 1.5005e-02, - 2DIAGNOSTIC, 5, -5.573672434864e-01, 1.797693134862e+308, 6.3657e-01, 1.3653e-02, - 2DIAGNOSTIC, 6, -5.576072959605e-01, 1.797693134862e+308, 6.5255e-01, 1.5984e-02, - 2DIAGNOSTIC, 7, -5.578462860536e-01, 1.797693134862e+308, 6.7024e-01, 1.7693e-02, - 2DIAGNOSTIC, 8, -5.582536950819e-01, 1.797693134862e+308, 6.9496e-01, 2.4717e-02, - 2DIAGNOSTIC, 9, -5.582704177696e-01, 1.797693134862e+308, 7.1281e-01, 1.7844e-02, - 2DIAGNOSTIC, 10, -5.582601792945e-01, 2.508230941393e-04, 7.2642e-01, 1.3612e-02, - 2DIAGNOSTIC, 11, -5.582419824517e-01, 1.811122194659e-04, 7.4233e-01, 1.5911e-02, - 2DIAGNOSTIC, 12, -5.582309869127e-01, 1.348608699105e-04, 7.5625e-01, 1.3926e-02, - 2DIAGNOSTIC, 13, -5.582099332747e-01, 9.848922136824e-05, 7.7205e-01, 1.5795e-02, - 2DIAGNOSTIC, 14, -5.581793003969e-01, 6.057312788639e-05, 7.8589e-01, 1.3842e-02, - 2DIAGNOSTIC, 15, -5.581754056397e-01, 2.953476569996e-05, 8.0155e-01, 1.5659e-02, - 2DIAGNOSTIC, 16, -5.581688629932e-01, 7.242750553513e-06, 8.1705e-01, 1.5504e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.697455165165e-01, 1.797693134862e+308, 1.2039e+00, 3.8685e-01, - 2DIAGNOSTIC, 2, -4.701282634986e-01, 1.797693134862e+308, 1.2991e+00, 9.5184e-02, - 2DIAGNOSTIC, 3, -4.705523072674e-01, 1.797693134862e+308, 1.3938e+00, 9.4749e-02, - 2DIAGNOSTIC, 4, -4.708608129375e-01, 1.797693134862e+308, 1.4874e+00, 9.3611e-02, - 2DIAGNOSTIC, 5, -4.711245159367e-01, 1.797693134862e+308, 1.6998e+00, 2.1235e-01, - 2DIAGNOSTIC, 6, -4.711239857917e-01, 1.797693134862e+308, 1.8073e+00, 1.0753e-01, - 2DIAGNOSTIC, 7, -4.711225419041e-01, 1.797693134862e+308, 1.9143e+00, 1.0694e-01, - 2DIAGNOSTIC, 8, -4.711206544023e-01, 1.797693134862e+308, 2.0199e+00, 1.0568e-01, - 2DIAGNOSTIC, 9, -4.711188688019e-01, 1.797693134862e+308, 2.1642e+00, 1.4422e-01, - 2DIAGNOSTIC, 10, -4.711164012568e-01, 1.696394525791e-04, 2.2707e+00, 1.0654e-01, - 2DIAGNOSTIC, 11, -4.711151845800e-01, 9.392501070846e-05, 2.3635e+00, 9.2759e-02, - 2DIAGNOSTIC, 12, -4.711140198840e-01, 4.166084593388e-05, 2.4699e+00, 1.0646e-01, - 2DIAGNOSTIC, 13, -4.711129101233e-01, 1.329346911161e-05, 2.5635e+00, 9.3594e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.119553511061e-01, 1.797693134862e+308, 3.8139e+00, 1.2504e+00, - 2DIAGNOSTIC, 2, -4.120417358841e-01, 1.797693134862e+308, 4.3692e+00, 5.5537e-01, - 2DIAGNOSTIC, 3, -4.121885473095e-01, 1.797693134862e+308, 5.6903e+00, 1.3210e+00, - 2DIAGNOSTIC, 4, -4.121885483027e-01, 1.797693134862e+308, 6.3860e+00, 6.9571e-01, - 2DIAGNOSTIC, 5, -4.121883459530e-01, 1.797693134862e+308, 7.0066e+00, 6.2058e-01, - 2DIAGNOSTIC, 6, -4.121882559753e-01, 1.797693134862e+308, 7.6592e+00, 6.5257e-01, - 2DIAGNOSTIC, 7, -4.121881528454e-01, 1.797693134862e+308, 8.3463e+00, 6.8716e-01, - 2DIAGNOSTIC, 8, -4.121880297946e-01, 1.797693134862e+308, 9.0033e+00, 6.5698e-01, - 2DIAGNOSTIC, 9, -4.121879023576e-01, 1.797693134862e+308, 9.5699e+00, 5.6663e-01, - 2DIAGNOSTIC, 10, -4.121877833415e-01, 2.797488054687e-05, 1.0119e+01, 5.4887e-01, - 2DIAGNOSTIC, 11, -4.121878181820e-01, 1.196915060968e-05, 1.0725e+01, 6.0659e-01, - 2DIAGNOSTIC, 12, -4.121878437876e-01, 2.540595656353e-06, 1.1279e+01, 5.5362e-01, - 2DIAGNOSTIC, 13, -4.121876077390e-01, 2.347358501825e-06, 1.1836e+01, 5.5727e-01, - 2DIAGNOSTIC, 14, -4.121876811313e-01, 2.195126239626e-06, 1.2505e+01, 6.6897e-01, - 2DIAGNOSTIC, 15, -4.121871767736e-01, 2.037619821441e-06, 1.3055e+01, 5.5023e-01, - 2DIAGNOSTIC, 16, -4.121871287282e-01, 1.901938829166e-06, 1.3667e+01, 6.1179e-01, - 2DIAGNOSTIC, 17, -4.121872590170e-01, 1.791139895846e-06, 1.4515e+01, 8.4771e-01, - 2DIAGNOSTIC, 18, -4.121871464166e-01, 1.690793063863e-06, 1.5068e+01, 5.5277e-01, - 2DIAGNOSTIC, 19, -4.121867731739e-01, 1.590285583573e-06, 1.5821e+01, 7.5352e-01, - 2DIAGNOSTIC, 20, -4.121866489199e-01, 1.499775555032e-06, 1.6434e+01, 6.1295e-01, - 2DIAGNOSTIC, 21, -4.121865312276e-01, 1.423526657648e-06, 1.6984e+01, 5.4945e-01, - 2DIAGNOSTIC, 22, -4.121864287073e-01, 1.360123305649e-06, 1.7529e+01, 5.4527e-01, - 2DIAGNOSTIC, 23, -4.121863516481e-01, 1.300678010671e-06, 1.8080e+01, 5.5074e-01, - 2DIAGNOSTIC, 24, -4.121864572510e-01, 1.259693841210e-06, 1.8716e+01, 6.3606e-01, - 2DIAGNOSTIC, 25, -4.121862552601e-01, 1.208666600166e-06, 1.9374e+01, 6.5776e-01, - 2DIAGNOSTIC, 26, -4.121860258216e-01, 1.160136257589e-06, 2.0071e+01, 6.9761e-01, - 2DIAGNOSTIC, 27, -4.121859088776e-01, 1.121638071436e-06, 2.0619e+01, 5.4821e-01, - 2DIAGNOSTIC, 28, -4.121856677920e-01, 1.082657757862e-06, 2.1177e+01, 5.5794e-01, - 2DIAGNOSTIC, 29, -4.121857320170e-01, 1.044100954695e-06, 2.1740e+01, 5.6228e-01, - 2DIAGNOSTIC, 30, -4.121858408446e-01, 1.012711287600e-06, 2.2386e+01, 6.4643e-01, - Elapsed time (stage 0): 2.2761e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.610061008593e-01, 1.797693134862e+308, 1.8471e-01, 1.8471e-01, - 2DIAGNOSTIC, 2, -6.628843573564e-01, 1.797693134862e+308, 1.8671e-01, 1.9970e-03, - 2DIAGNOSTIC, 3, -6.659991876836e-01, 1.797693134862e+308, 1.8872e-01, 2.0049e-03, - 2DIAGNOSTIC, 4, -6.705837327890e-01, 1.797693134862e+308, 1.9064e-01, 1.9212e-03, - 2DIAGNOSTIC, 5, -6.756017671525e-01, 1.797693134862e+308, 1.9307e-01, 2.4340e-03, - 2DIAGNOSTIC, 6, -6.782158163020e-01, 1.797693134862e+308, 1.9609e-01, 3.0241e-03, - 2DIAGNOSTIC, 7, -6.797524048190e-01, 1.797693134862e+308, 1.9919e-01, 3.0951e-03, - 2DIAGNOSTIC, 8, -6.800349012956e-01, 1.797693134862e+308, 2.0230e-01, 3.1111e-03, - 2DIAGNOSTIC, 9, -6.810645670279e-01, 1.797693134862e+308, 2.0480e-01, 2.4991e-03, - 2DIAGNOSTIC, 10, -6.817195480241e-01, 2.161601056464e-03, 2.0721e-01, 2.4140e-03, - 2DIAGNOSTIC, 11, -6.816782912835e-01, 1.619989942374e-03, 2.0980e-01, 2.5809e-03, - 2DIAGNOSTIC, 12, -6.819575287576e-01, 1.101628881309e-03, 2.1271e-01, 2.9099e-03, - 2DIAGNOSTIC, 13, -6.824092032797e-01, 6.786897750348e-04, 2.1563e-01, 2.9290e-03, - 2DIAGNOSTIC, 14, -6.824604547862e-01, 3.909969033288e-04, 2.1885e-01, 3.2179e-03, - 2DIAGNOSTIC, 15, -6.824878136162e-01, 2.462149436640e-04, 2.2242e-01, 3.5691e-03, - 2DIAGNOSTIC, 16, -6.825098164299e-01, 1.659739090414e-04, 2.2488e-01, 2.4550e-03, - 2DIAGNOSTIC, 17, -6.826774419230e-01, 1.224565496499e-04, 2.2747e-01, 2.5909e-03, - 2DIAGNOSTIC, 18, -6.830727580098e-01, 8.764877551561e-05, 2.3002e-01, 2.5511e-03, - 2DIAGNOSTIC, 19, -6.832204690040e-01, 7.397931281927e-05, 2.3295e-01, 2.9349e-03, - 2DIAGNOSTIC, 20, -6.837626160136e-01, 8.035752607718e-05, 2.3564e-01, 2.6860e-03, - 2DIAGNOSTIC, 21, -6.839331537974e-01, 8.116595849061e-05, 2.3803e-01, 2.3901e-03, - 2DIAGNOSTIC, 22, -6.840032584396e-01, 8.088369031232e-05, 2.4065e-01, 2.6209e-03, - 2DIAGNOSTIC, 23, -6.839022416699e-01, 7.958482627578e-05, 2.4323e-01, 2.5761e-03, - 2DIAGNOSTIC, 24, -6.835245123262e-01, 6.542360671821e-05, 2.4612e-01, 2.8899e-03, - 2DIAGNOSTIC, 25, -6.835353600431e-01, 4.716283980979e-05, 2.4872e-01, 2.6031e-03, - 2DIAGNOSTIC, 26, -6.835382649030e-01, 2.625171436122e-05, 2.5100e-01, 2.2831e-03, - 2DIAGNOSTIC, 27, -6.835441721426e-01, 7.102135598354e-06, 2.5354e-01, 2.5349e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.579712681563e-01, 1.797693134862e+308, 4.7490e-01, 2.2136e-01, - 2DIAGNOSTIC, 2, -5.590926678888e-01, 1.797693134862e+308, 4.8990e-01, 1.5005e-02, - 2DIAGNOSTIC, 3, -5.600813359101e-01, 1.797693134862e+308, 5.0476e-01, 1.4861e-02, - 2DIAGNOSTIC, 4, -5.608260886108e-01, 1.797693134862e+308, 5.1975e-01, 1.4982e-02, - 2DIAGNOSTIC, 5, -5.612835231707e-01, 1.797693134862e+308, 5.3416e-01, 1.4418e-02, - 2DIAGNOSTIC, 6, -5.617209891382e-01, 1.797693134862e+308, 5.4918e-01, 1.5011e-02, - 2DIAGNOSTIC, 7, -5.620998271585e-01, 1.797693134862e+308, 5.7020e-01, 2.1028e-02, - 2DIAGNOSTIC, 8, -5.623600970121e-01, 1.797693134862e+308, 5.8717e-01, 1.6971e-02, - 2DIAGNOSTIC, 9, -5.625281862040e-01, 1.797693134862e+308, 6.0195e-01, 1.4772e-02, - 2DIAGNOSTIC, 10, -5.626642475710e-01, 5.077698228063e-04, 6.1842e-01, 1.6470e-02, - 2DIAGNOSTIC, 11, -5.628761417661e-01, 3.619902477951e-04, 6.3756e-01, 1.9147e-02, - 2DIAGNOSTIC, 12, -5.629717242570e-01, 2.587702297900e-04, 6.5444e-01, 1.6872e-02, - 2DIAGNOSTIC, 13, -5.630458386890e-01, 1.892198777789e-04, 6.7113e-01, 1.6697e-02, - 2DIAGNOSTIC, 14, -5.630588308065e-01, 1.399337014061e-04, 6.9408e-01, 2.2946e-02, - 2DIAGNOSTIC, 15, -5.630509347823e-01, 9.965207847178e-05, 7.1043e-01, 1.6354e-02, - 2DIAGNOSTIC, 16, -5.630411950759e-01, 6.875127047744e-05, 7.2491e-01, 1.4477e-02, - 2DIAGNOSTIC, 17, -5.630325337252e-01, 4.619900191570e-05, 7.3965e-01, 1.4740e-02, - 2DIAGNOSTIC, 18, -5.630361452654e-01, 2.943914485407e-05, 7.5367e-01, 1.4022e-02, - 2DIAGNOSTIC, 19, -5.630273518925e-01, 1.610651527822e-05, 7.6777e-01, 1.4098e-02, - 2DIAGNOSTIC, 20, -5.630183034696e-01, 5.893177464057e-06, 7.8179e-01, 1.4023e-02, - 2DIAGNOSTIC, 21, -5.630223812030e-01, 1.424926450472e-06, 7.9769e-01, 1.5893e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.703211486296e-01, 1.797693134862e+308, 1.1800e+00, 3.8227e-01, - 2DIAGNOSTIC, 2, -4.713166491785e-01, 1.797693134862e+308, 1.2839e+00, 1.0390e-01, - 2DIAGNOSTIC, 3, -4.722810753430e-01, 1.797693134862e+308, 1.3872e+00, 1.0336e-01, - 2DIAGNOSTIC, 4, -4.728934725975e-01, 1.797693134862e+308, 1.4871e+00, 9.9868e-02, - 2DIAGNOSTIC, 5, -4.731517020418e-01, 1.797693134862e+308, 1.5868e+00, 9.9708e-02, - 2DIAGNOSTIC, 6, -4.733354582737e-01, 1.797693134862e+308, 1.6879e+00, 1.0106e-01, - 2DIAGNOSTIC, 7, -4.734921683218e-01, 1.797693134862e+308, 1.8168e+00, 1.2891e-01, - 2DIAGNOSTIC, 8, -4.735157096272e-01, 1.797693134862e+308, 1.9452e+00, 1.2841e-01, - 2DIAGNOSTIC, 9, -4.735285966309e-01, 1.797693134862e+308, 2.0601e+00, 1.1491e-01, - 2DIAGNOSTIC, 10, -4.735930499562e-01, 3.868020589874e-04, 2.1762e+00, 1.1611e-01, - 2DIAGNOSTIC, 11, -4.736812471965e-01, 2.298024705051e-04, 2.2779e+00, 1.0172e-01, - 2DIAGNOSTIC, 12, -4.736891464934e-01, 1.278707385842e-04, 2.3939e+00, 1.1600e-01, - 2DIAGNOSTIC, 13, -4.737003439596e-01, 7.494805374103e-05, 2.5090e+00, 1.1510e-01, - 2DIAGNOSTIC, 14, -4.737096590218e-01, 4.961051315708e-05, 2.6402e+00, 1.3115e-01, - 2DIAGNOSTIC, 15, -4.737133101291e-01, 3.364501616407e-05, 2.7545e+00, 1.1433e-01, - 2DIAGNOSTIC, 16, -4.737169984235e-01, 2.361613741395e-05, 2.8564e+00, 1.0187e-01, - 2DIAGNOSTIC, 17, -4.737274664323e-01, 1.868907133818e-05, 3.0115e+00, 1.5514e-01, - 2DIAGNOSTIC, 18, -4.737302103923e-01, 1.368050028693e-05, 3.1161e+00, 1.0458e-01, - 2DIAGNOSTIC, 19, -4.737331584635e-01, 8.572515366748e-06, 3.2185e+00, 1.0240e-01, - 2DIAGNOSTIC, 20, -4.737342516738e-01, 5.236001846293e-06, 3.3206e+00, 1.0211e-01, - 2DIAGNOSTIC, 21, -4.737349771404e-01, 4.420938686911e-06, 3.4817e+00, 1.6114e-01, - 2DIAGNOSTIC, 22, -4.737350048027e-01, 3.616780894493e-06, 3.8541e+00, 3.7232e-01, - 2DIAGNOSTIC, 23, -4.737350048013e-01, 2.965882819977e-06, 4.1997e+00, 3.4561e-01, - 2DIAGNOSTIC, 24, -4.737350048013e-01, 2.455549139427e-06, 4.3214e+00, 1.2175e-01, - 2DIAGNOSTIC, 25, -4.737350048013e-01, 1.968563539047e-06, 4.4396e+00, 1.1822e-01, - 2DIAGNOSTIC, 26, -4.737350048013e-01, 1.533434064345e-06, 4.5695e+00, 1.2988e-01, - 2DIAGNOSTIC, 27, -4.737350048013e-01, 1.333608279717e-06, 4.6861e+00, 1.1662e-01, - 2DIAGNOSTIC, 28, -4.737350048013e-01, 1.191050594498e-06, 4.8292e+00, 1.4306e-01, - 2DIAGNOSTIC, 29, -4.737350048013e-01, 1.113795691204e-06, 4.9456e+00, 1.1643e-01, - 2DIAGNOSTIC, 30, -4.737350048013e-01, 1.061641006564e-06, 5.0750e+00, 1.2932e-01, - 2DIAGNOSTIC, 31, -4.737350048013e-01, 1.026835183549e-06, 5.1772e+00, 1.0229e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.121580224312e-01, 1.797693134862e+308, 6.5174e+00, 1.3402e+00, - 2DIAGNOSTIC, 2, -4.124130198780e-01, 1.797693134862e+308, 7.1268e+00, 6.0938e-01, - 2DIAGNOSTIC, 3, -4.126168837767e-01, 1.797693134862e+308, 7.7470e+00, 6.2025e-01, - 2DIAGNOSTIC, 4, -4.127621020346e-01, 1.797693134862e+308, 8.4465e+00, 6.9948e-01, - 2DIAGNOSTIC, 5, -4.128402466263e-01, 1.797693134862e+308, 9.2120e+00, 7.6552e-01, - 2DIAGNOSTIC, 6, -4.128881756699e-01, 1.797693134862e+308, 9.8180e+00, 6.0600e-01, - 2DIAGNOSTIC, 7, -4.129403514598e-01, 1.797693134862e+308, 1.0726e+01, 9.0763e-01, - 2DIAGNOSTIC, 8, -4.129446659509e-01, 1.797693134862e+308, 1.1421e+01, 6.9568e-01, - 2DIAGNOSTIC, 9, -4.129484392001e-01, 1.797693134862e+308, 1.2264e+01, 8.4217e-01, - 2DIAGNOSTIC, 10, -4.129486452326e-01, 1.119527268247e-04, 1.3215e+01, 9.5172e-01, - 2DIAGNOSTIC, 11, -4.129486529911e-01, 6.634312265637e-05, 1.4064e+01, 8.4919e-01, - 2DIAGNOSTIC, 12, -4.129486539795e-01, 3.706041546778e-05, 1.4681e+01, 6.1662e-01, - 2DIAGNOSTIC, 13, -4.129486540457e-01, 1.983072020156e-05, 1.5522e+01, 8.4127e-01, - 2DIAGNOSTIC, 14, -4.129486542079e-01, 1.058206160325e-05, 1.6204e+01, 6.8121e-01, - 2DIAGNOSTIC, 15, -4.129485150585e-01, 5.356909318230e-06, 1.7661e+01, 1.4577e+00, - 2DIAGNOSTIC, 16, -4.129485150601e-01, 2.491351092399e-06, 1.9596e+01, 1.9348e+00, - 2DIAGNOSTIC, 17, -4.129485150601e-01, 2.026593126772e-06, 2.0211e+01, 6.1449e-01, - 2DIAGNOSTIC, 18, -4.129485150601e-01, 1.760068596396e-06, 2.0923e+01, 7.1195e-01, - 2DIAGNOSTIC, 19, -4.129485150601e-01, 1.658838024172e-06, 2.1609e+01, 6.8681e-01, - 2DIAGNOSTIC, 20, -4.129485150601e-01, 1.576366555824e-06, 2.2379e+01, 7.6981e-01, - 2DIAGNOSTIC, 21, -4.129485150601e-01, 1.503374599539e-06, 2.3170e+01, 7.9040e-01, - 2DIAGNOSTIC, 22, -4.129485150601e-01, 1.438075549261e-06, 2.3884e+01, 7.1414e-01, - 2DIAGNOSTIC, 23, -4.129485150601e-01, 1.379170247694e-06, 2.4575e+01, 6.9145e-01, - 2DIAGNOSTIC, 24, -4.129485150601e-01, 1.325684239765e-06, 2.5279e+01, 7.0410e-01, - 2DIAGNOSTIC, 25, -4.129485150601e-01, 1.272646428838e-06, 2.6070e+01, 7.9119e-01, - 2DIAGNOSTIC, 26, -4.129485150601e-01, 1.223689260046e-06, 2.6752e+01, 6.8142e-01, - 2DIAGNOSTIC, 27, -4.129485150601e-01, 1.178359206662e-06, 2.7443e+01, 6.9117e-01, - 2DIAGNOSTIC, 28, -4.129485150601e-01, 1.136267581137e-06, 2.8143e+01, 7.0027e-01, - 2DIAGNOSTIC, 29, -4.129485150601e-01, 1.097079317017e-06, 2.8917e+01, 7.7345e-01, - 2DIAGNOSTIC, 30, -4.129485150601e-01, 1.060504030738e-06, 2.9610e+01, 6.9372e-01, - 2DIAGNOSTIC, 31, -4.129485150601e-01, 1.026288813516e-06, 3.0314e+01, 7.0319e-01, - Elapsed time (stage 1): 3.0721e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.946317361814e-01, 1.797693134862e+308, 2.5763e-01, 2.5763e-01, - 1DIAGNOSTIC, 2, -9.071478166373e-01, 1.797693134862e+308, 3.5605e-01, 9.8424e-02, - 1DIAGNOSTIC, 3, -9.159746866431e-01, 1.797693134862e+308, 4.5472e-01, 9.8668e-02, - 1DIAGNOSTIC, 4, -9.224946585070e-01, 1.797693134862e+308, 5.5128e-01, 9.6562e-02, - 1DIAGNOSTIC, 5, -9.276246496722e-01, 1.797693134862e+308, 6.5106e-01, 9.9773e-02, - 1DIAGNOSTIC, 6, -9.312036010861e-01, 1.797693134862e+308, 7.5224e-01, 1.0118e-01, - 1DIAGNOSTIC, 7, -9.341781618610e-01, 1.797693134862e+308, 8.5473e-01, 1.0249e-01, - 1DIAGNOSTIC, 8, -9.365760889967e-01, 1.797693134862e+308, 9.5197e-01, 9.7241e-02, - 1DIAGNOSTIC, 9, -9.385317473697e-01, 1.797693134862e+308, 1.0507e+00, 9.8752e-02, - 1DIAGNOSTIC, 10, -9.400619077884e-01, 2.872122596366e-03, 1.1517e+00, 1.0094e-01, - 1DIAGNOSTIC, 11, -9.412478513367e-01, 1.985271984390e-03, 1.2538e+00, 1.0210e-01, - 1DIAGNOSTIC, 12, -9.422287731552e-01, 1.411644508217e-03, 1.3560e+00, 1.0222e-01, - 1DIAGNOSTIC, 13, -9.431214196216e-01, 1.026494660118e-03, 1.4544e+00, 9.8461e-02, - 1DIAGNOSTIC, 14, -9.438146474625e-01, 7.595486632009e-04, 1.5545e+00, 1.0004e-01, - 1DIAGNOSTIC, 15, -9.444243940565e-01, 5.752468897906e-04, 1.6524e+00, 9.7950e-02, - 1DIAGNOSTIC, 16, -9.449356914797e-01, 4.388298984342e-04, 1.7525e+00, 1.0006e-01, - 1DIAGNOSTIC, 17, -9.453670623172e-01, 3.388185119120e-04, 1.8525e+00, 9.9996e-02, - 1DIAGNOSTIC, 18, -9.457352976628e-01, 2.651476375714e-04, 1.9594e+00, 1.0688e-01, - 1DIAGNOSTIC, 19, -9.460465921196e-01, 2.107989805146e-04, 2.0670e+00, 1.0758e-01, - 1DIAGNOSTIC, 20, -9.463186136884e-01, 1.696316672198e-04, 2.1689e+00, 1.0197e-01, - 1DIAGNOSTIC, 21, -9.466121525171e-01, 1.379576491144e-04, 2.2723e+00, 1.0340e-01, - 1DIAGNOSTIC, 22, -9.468238006503e-01, 1.126826977735e-04, 2.3726e+00, 1.0022e-01, - 1DIAGNOSTIC, 23, -9.470088592115e-01, 9.330533365265e-05, 2.4689e+00, 9.6309e-02, - 1DIAGNOSTIC, 24, -9.471721326745e-01, 7.765263651513e-05, 2.5695e+00, 1.0060e-01, - 1DIAGNOSTIC, 25, -9.473172228078e-01, 6.514720097800e-05, 2.6681e+00, 9.8611e-02, - 1DIAGNOSTIC, 26, -9.474467729806e-01, 5.497972377377e-05, 2.7640e+00, 9.5908e-02, - 1DIAGNOSTIC, 27, -9.475611844295e-01, 4.655953745050e-05, 2.8605e+00, 9.6510e-02, - 1DIAGNOSTIC, 28, -9.476632272151e-01, 3.950561469697e-05, 2.9563e+00, 9.5805e-02, - 1DIAGNOSTIC, 29, -9.477539853686e-01, 3.347556146734e-05, 3.0545e+00, 9.8185e-02, - 1DIAGNOSTIC, 30, -9.478357716652e-01, 2.830241975108e-05, 3.1509e+00, 9.6418e-02, - 1DIAGNOSTIC, 31, -9.479097634494e-01, 2.443877554300e-05, 3.2579e+00, 1.0702e-01, - 1DIAGNOSTIC, 32, -9.479740714925e-01, 2.117838992000e-05, 3.3575e+00, 9.9626e-02, - 1DIAGNOSTIC, 33, -9.480314721648e-01, 1.839959468782e-05, 3.4545e+00, 9.6950e-02, - 1DIAGNOSTIC, 34, -9.480825508299e-01, 1.601464525296e-05, 3.5566e+00, 1.0213e-01, - 1DIAGNOSTIC, 35, -9.481291955732e-01, 1.397080994967e-05, 3.6543e+00, 9.7643e-02, - 1DIAGNOSTIC, 36, -9.481712504921e-01, 1.222291448850e-05, 3.7552e+00, 1.0091e-01, - 1DIAGNOSTIC, 37, -9.482086505469e-01, 1.071638726927e-05, 3.8596e+00, 1.0444e-01, - 1DIAGNOSTIC, 38, -9.482412079884e-01, 9.409096374761e-06, 3.9597e+00, 1.0004e-01, - 1DIAGNOSTIC, 39, -9.482707091227e-01, 8.273281376210e-06, 4.0613e+00, 1.0163e-01, - 1DIAGNOSTIC, 40, -9.482971233983e-01, 7.290549418854e-06, 4.1554e+00, 9.4094e-02, - 1DIAGNOSTIC, 41, -9.483209252605e-01, 6.448157779230e-06, 4.2531e+00, 9.7673e-02, - 1DIAGNOSTIC, 42, -9.483421775035e-01, 5.712495724071e-06, 4.3533e+00, 1.0021e-01, - 1DIAGNOSTIC, 43, -9.483614083728e-01, 5.069984498434e-06, 4.4499e+00, 9.6654e-02, - 1DIAGNOSTIC, 44, -9.483789848659e-01, 4.508571704264e-06, 4.5437e+00, 9.3777e-02, - 1DIAGNOSTIC, 45, -9.483947695795e-01, 4.024008080999e-06, 4.6431e+00, 9.9360e-02, - 1DIAGNOSTIC, 46, -9.484088628621e-01, 3.607348859586e-06, 4.7389e+00, 9.5829e-02, - 1DIAGNOSTIC, 47, -9.484217102530e-01, 3.248535102793e-06, 4.8377e+00, 9.8794e-02, - 1DIAGNOSTIC, 48, -9.484332350205e-01, 2.932430653267e-06, 4.9347e+00, 9.6995e-02, - 1DIAGNOSTIC, 49, -9.484429243589e-01, 2.650386121961e-06, 5.0304e+00, 9.5678e-02, - 1DIAGNOSTIC, 50, -9.484510965252e-01, 2.394267365105e-06, 5.1302e+00, 9.9830e-02, - 1DIAGNOSTIC, 51, -9.484582199773e-01, 2.160705976251e-06, 5.2265e+00, 9.6356e-02, - 1DIAGNOSTIC, 52, -9.484648899118e-01, 1.948990660149e-06, 5.3345e+00, 1.0792e-01, - 1DIAGNOSTIC, 53, -9.484707651549e-01, 1.758212449625e-06, 5.4322e+00, 9.7764e-02, - 1DIAGNOSTIC, 54, -9.484766656309e-01, 1.593165217119e-06, 5.5318e+00, 9.9590e-02, - 1DIAGNOSTIC, 55, -9.484817638484e-01, 1.451097725366e-06, 5.6376e+00, 1.0578e-01, - 1DIAGNOSTIC, 56, -9.484820492129e-01, 1.306760846833e-06, 5.7387e+00, 1.0108e-01, - 1DIAGNOSTIC, 57, -9.484862764027e-01, 1.186597766191e-06, 5.8438e+00, 1.0515e-01, - 1DIAGNOSTIC, 58, -9.484900457095e-01, 1.088651030001e-06, 5.9513e+00, 1.0752e-01, - 1DIAGNOSTIC, 59, -9.484934640876e-01, 1.008119520175e-06, 6.0537e+00, 1.0239e-01, - 1DIAGNOSTIC, 60, -9.484963213582e-01, 9.402185759538e-07, 6.1612e+00, 1.0750e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.012292172288e-01, 1.797693134862e+308, 7.0084e+00, 8.4718e-01, - 1DIAGNOSTIC, 2, -9.051861397988e-01, 1.797693134862e+308, 7.6812e+00, 6.7283e-01, - 1DIAGNOSTIC, 3, -9.087645510091e-01, 1.797693134862e+308, 8.3548e+00, 6.7355e-01, - 1DIAGNOSTIC, 4, -9.118752032032e-01, 1.797693134862e+308, 9.0257e+00, 6.7094e-01, - 1DIAGNOSTIC, 5, -9.143183465300e-01, 1.797693134862e+308, 9.6945e+00, 6.6874e-01, - 1DIAGNOSTIC, 6, -9.164508582570e-01, 1.797693134862e+308, 1.0369e+01, 6.7421e-01, - 1DIAGNOSTIC, 7, -9.181752471416e-01, 1.797693134862e+308, 1.1043e+01, 6.7411e-01, - 1DIAGNOSTIC, 8, -9.198006958569e-01, 1.797693134862e+308, 1.1712e+01, 6.6918e-01, - 1DIAGNOSTIC, 9, -9.211292299403e-01, 1.797693134862e+308, 1.2393e+01, 6.8099e-01, - 1DIAGNOSTIC, 10, -9.223077509281e-01, 1.435192904478e-03, 1.3083e+01, 6.9009e-01, - 1DIAGNOSTIC, 11, -9.233679903025e-01, 1.114444520191e-03, 1.3762e+01, 6.7903e-01, - 1DIAGNOSTIC, 12, -9.242062018751e-01, 8.703827518707e-04, 1.4431e+01, 6.6848e-01, - 1DIAGNOSTIC, 13, -9.249858994366e-01, 6.885167182635e-04, 1.5098e+01, 6.6727e-01, - 1DIAGNOSTIC, 14, -9.257065143697e-01, 5.544068310091e-04, 1.5785e+01, 6.8706e-01, - 1DIAGNOSTIC, 15, -9.263914341692e-01, 4.517041234175e-04, 1.6467e+01, 6.8208e-01, - 1DIAGNOSTIC, 16, -9.270483200271e-01, 3.740857883210e-04, 1.7153e+01, 6.8630e-01, - 1DIAGNOSTIC, 17, -9.276836981902e-01, 3.138078258183e-04, 1.7834e+01, 6.8119e-01, - 1DIAGNOSTIC, 18, -9.283075214803e-01, 2.696889586904e-04, 1.8513e+01, 6.7819e-01, - 1DIAGNOSTIC, 19, -9.289148468904e-01, 2.365213159469e-04, 1.9187e+01, 6.7402e-01, - 1DIAGNOSTIC, 20, -9.295060630835e-01, 2.118446149791e-04, 1.9846e+01, 6.5899e-01, - 1DIAGNOSTIC, 21, -9.300728654635e-01, 1.936051905309e-04, 2.0528e+01, 6.8205e-01, - 1DIAGNOSTIC, 22, -9.306233378750e-01, 1.783428569670e-04, 2.1215e+01, 6.8696e-01, - 1DIAGNOSTIC, 23, -9.311363726754e-01, 1.649906177863e-04, 2.1896e+01, 6.8165e-01, - 1DIAGNOSTIC, 24, -9.316095180524e-01, 1.525698711202e-04, 2.2573e+01, 6.7713e-01, - 1DIAGNOSTIC, 25, -9.320465960876e-01, 1.406130985325e-04, 2.3261e+01, 6.8743e-01, - 1DIAGNOSTIC, 26, -9.324500543506e-01, 1.288892957015e-04, 2.3944e+01, 6.8291e-01, - 1DIAGNOSTIC, 27, -9.328258956366e-01, 1.174051955611e-04, 2.4620e+01, 6.7649e-01, - 1DIAGNOSTIC, 28, -9.331628087690e-01, 1.062144650174e-04, 2.5297e+01, 6.7652e-01, - 1DIAGNOSTIC, 29, -9.334661808601e-01, 9.542425364121e-05, 2.5967e+01, 6.7001e-01, - 1DIAGNOSTIC, 30, -9.337366098694e-01, 8.517031235757e-05, 2.6627e+01, 6.6009e-01, - 1DIAGNOSTIC, 31, -9.339861639912e-01, 7.561848367024e-05, 2.7312e+01, 6.8532e-01, - 1DIAGNOSTIC, 32, -9.342135956408e-01, 6.697906079801e-05, 2.7997e+01, 6.8489e-01, - 1DIAGNOSTIC, 33, -9.344206578967e-01, 5.923155653003e-05, 2.8677e+01, 6.8028e-01, - 1DIAGNOSTIC, 34, -9.346082753230e-01, 5.231044706638e-05, 2.9373e+01, 6.9572e-01, - 1DIAGNOSTIC, 35, -9.347778478388e-01, 4.616621993558e-05, 3.0062e+01, 6.8938e-01, - 1DIAGNOSTIC, 36, -9.349315887917e-01, 4.075509549703e-05, 3.0728e+01, 6.6597e-01, - 1DIAGNOSTIC, 37, -9.350712131874e-01, 3.606785759286e-05, 3.1405e+01, 6.7658e-01, - 1DIAGNOSTIC, 38, -9.351983454403e-01, 3.197738438494e-05, 3.2081e+01, 6.7582e-01, - 1DIAGNOSTIC, 39, -9.353196568157e-01, 2.843208324814e-05, 3.2757e+01, 6.7601e-01, - 1DIAGNOSTIC, 40, -9.354296378104e-01, 2.531218419323e-05, 3.3440e+01, 6.8290e-01, - 1DIAGNOSTIC, 41, -9.355387381756e-01, 2.265667892837e-05, 3.4116e+01, 6.7666e-01, - 1DIAGNOSTIC, 42, -9.356330396807e-01, 2.035815492932e-05, 3.4787e+01, 6.7102e-01, - 1DIAGNOSTIC, 43, -9.357191010686e-01, 1.835944218235e-05, 3.5467e+01, 6.7912e-01, - 1DIAGNOSTIC, 44, -9.358001769893e-01, 1.661748669462e-05, 3.6144e+01, 6.7740e-01, - 1DIAGNOSTIC, 45, -9.358754389676e-01, 1.507963054087e-05, 3.6829e+01, 6.8496e-01, - 1DIAGNOSTIC, 46, -9.359456761945e-01, 1.370673246212e-05, 3.7511e+01, 6.8174e-01, - 1DIAGNOSTIC, 47, -9.360111477439e-01, 1.246741156367e-05, 3.8190e+01, 6.7894e-01, - 1DIAGNOSTIC, 48, -9.360717537791e-01, 1.133441367645e-05, 3.8868e+01, 6.7852e-01, - 1DIAGNOSTIC, 49, -9.361267629573e-01, 1.031462823754e-05, 3.9555e+01, 6.8672e-01, - 1DIAGNOSTIC, 50, -9.361810698401e-01, 9.402169710144e-06, 4.0233e+01, 6.7853e-01, - 1DIAGNOSTIC, 51, -9.362334967111e-01, 8.643117652484e-06, 4.0913e+01, 6.7977e-01, - 1DIAGNOSTIC, 52, -9.362820702035e-01, 7.974702172370e-06, 4.1593e+01, 6.7988e-01, - 1DIAGNOSTIC, 53, -9.363267907755e-01, 7.371111557321e-06, 4.2290e+01, 6.9692e-01, - 1DIAGNOSTIC, 54, -9.363597120453e-01, 6.778042247413e-06, 4.2971e+01, 6.8056e-01, - 1DIAGNOSTIC, 55, -9.363981833961e-01, 6.238722826613e-06, 4.3652e+01, 6.8178e-01, - 1DIAGNOSTIC, 56, -9.364263019974e-01, 5.704381758107e-06, 4.4328e+01, 6.7580e-01, - 1DIAGNOSTIC, 57, -9.364609965619e-01, 5.226728436121e-06, 4.4999e+01, 6.7113e-01, - 1DIAGNOSTIC, 58, -9.364931477642e-01, 4.800106289726e-06, 4.5663e+01, 6.6342e-01, - 1DIAGNOSTIC, 59, -9.365237146826e-01, 4.417564906500e-06, 4.6358e+01, 6.9534e-01, - 1DIAGNOSTIC, 60, -9.365520364771e-01, 4.091070928199e-06, 4.7032e+01, 6.7408e-01, - 1DIAGNOSTIC, 61, -9.365792407344e-01, 3.827131679061e-06, 4.7708e+01, 6.7607e-01, - 1DIAGNOSTIC, 62, -9.366045994036e-01, 3.613394725530e-06, 4.8389e+01, 6.8047e-01, - 1DIAGNOSTIC, 63, -9.366292600883e-01, 3.441252967321e-06, 4.9066e+01, 6.7691e-01, - 1DIAGNOSTIC, 64, -9.366520717694e-01, 3.253886071534e-06, 4.9746e+01, 6.8087e-01, - 1DIAGNOSTIC, 65, -9.366765484302e-01, 3.100604325356e-06, 5.0418e+01, 6.7167e-01, - 1DIAGNOSTIC, 66, -9.366964997424e-01, 2.919560526733e-06, 5.1098e+01, 6.8019e-01, - 1DIAGNOSTIC, 67, -9.367162735579e-01, 2.754853635628e-06, 5.1790e+01, 6.9147e-01, - 1DIAGNOSTIC, 68, -9.367347927053e-01, 2.600366126659e-06, 5.2473e+01, 6.8373e-01, - 1DIAGNOSTIC, 69, -9.367525839926e-01, 2.456418352391e-06, 5.3157e+01, 6.8348e-01, - 1DIAGNOSTIC, 70, -9.367692616514e-01, 2.318117035686e-06, 5.3825e+01, 6.6851e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.774666703591e-01, 1.797693134862e+308, 5.9467e+01, 5.6414e+00, - 1DIAGNOSTIC, 2, -8.804389055951e-01, 1.797693134862e+308, 6.4840e+01, 5.3728e+00, - 1DIAGNOSTIC, 3, -8.834365550607e-01, 1.797693134862e+308, 7.0306e+01, 5.4659e+00, - 1DIAGNOSTIC, 4, -8.862390658973e-01, 1.797693134862e+308, 7.5707e+01, 5.4011e+00, - 1DIAGNOSTIC, 5, -8.889114242421e-01, 1.797693134862e+308, 8.1115e+01, 5.4085e+00, - 1DIAGNOSTIC, 6, -8.915881669870e-01, 1.797693134862e+308, 8.6526e+01, 5.4112e+00, - 1DIAGNOSTIC, 7, -8.940073094908e-01, 1.797693134862e+308, 9.1917e+01, 5.3909e+00, - 1DIAGNOSTIC, 8, -8.961139542580e-01, 1.797693134862e+308, 9.7277e+01, 5.3595e+00, - 1DIAGNOSTIC, 9, -8.979268353638e-01, 1.797693134862e+308, 1.0269e+02, 5.4095e+00, - 1DIAGNOSTIC, 10, -8.993239479126e-01, 1.604026409577e-03, 1.0807e+02, 5.3868e+00, - 1DIAGNOSTIC, 11, -9.004070714073e-01, 1.332163899600e-03, 1.1345e+02, 5.3798e+00, - 1DIAGNOSTIC, 12, -9.012491409257e-01, 1.086878479683e-03, 1.1882e+02, 5.3693e+00, - 1DIAGNOSTIC, 13, -9.019290770817e-01, 8.708838393543e-04, 1.2426e+02, 5.4371e+00, - 1DIAGNOSTIC, 14, -9.024829467786e-01, 6.826014769297e-04, 1.2964e+02, 5.3801e+00, - 1DIAGNOSTIC, 15, -9.026973531695e-01, 5.179271865459e-04, 1.3507e+02, 5.4352e+00, - 1DIAGNOSTIC, 16, -9.029903446414e-01, 3.851654644389e-04, 1.4047e+02, 5.3952e+00, - 1DIAGNOSTIC, 17, -9.031373337872e-01, 2.802364902756e-04, 1.4592e+02, 5.4475e+00, - 1DIAGNOSTIC, 18, -9.032635629987e-01, 2.001974576002e-04, 1.5133e+02, 5.4122e+00, - 1DIAGNOSTIC, 19, -9.033877654112e-01, 1.422442203280e-04, 1.5678e+02, 5.4541e+00, - 1DIAGNOSTIC, 20, -9.035111627452e-01, 1.009346196224e-04, 1.6223e+02, 5.4481e+00, - 1DIAGNOSTIC, 21, -9.036319230060e-01, 7.231764292481e-05, 1.6773e+02, 5.4974e+00, - 1DIAGNOSTIC, 22, -9.037519635451e-01, 5.338341765340e-05, 1.7315e+02, 5.4239e+00, - 1DIAGNOSTIC, 23, -9.038710088495e-01, 4.209700147182e-05, 1.7862e+02, 5.4680e+00, - 1DIAGNOSTIC, 24, -9.039879306505e-01, 3.675317350114e-05, 1.8405e+02, 5.4329e+00, - 1DIAGNOSTIC, 25, -9.041038053552e-01, 3.260262911384e-05, 1.8948e+02, 5.4281e+00, - 1DIAGNOSTIC, 26, -9.042226884602e-01, 3.079920827877e-05, 1.9489e+02, 5.4080e+00, - 1DIAGNOSTIC, 27, -9.043421714777e-01, 2.943233171144e-05, 2.0033e+02, 5.4354e+00, - 1DIAGNOSTIC, 28, -9.044610329945e-01, 2.823432498920e-05, 2.0575e+02, 5.4266e+00, - 1DIAGNOSTIC, 29, -9.045767904010e-01, 2.714592143024e-05, 2.1115e+02, 5.3928e+00, - 1DIAGNOSTIC, 30, -9.046985503935e-01, 2.622277519299e-05, 2.1658e+02, 5.4333e+00, - 1DIAGNOSTIC, 31, -9.048166918192e-01, 2.538318285204e-05, 2.2200e+02, 5.4194e+00, - 1DIAGNOSTIC, 32, -9.049376632455e-01, 2.463991331092e-05, 2.2740e+02, 5.3989e+00, - 1DIAGNOSTIC, 33, -9.050635113041e-01, 2.401698589295e-05, 2.3284e+02, 5.4439e+00, - 1DIAGNOSTIC, 34, -9.051921202828e-01, 2.349693551258e-05, 2.3826e+02, 5.4161e+00, - 1DIAGNOSTIC, 35, -9.053214939075e-01, 2.304897323543e-05, 2.4370e+02, 5.4431e+00, - 1DIAGNOSTIC, 36, -9.054521628791e-01, 2.268356952733e-05, 2.4915e+02, 5.4497e+00, - 1DIAGNOSTIC, 37, -9.055825016810e-01, 2.237014006707e-05, 2.5456e+02, 5.4065e+00, - 1DIAGNOSTIC, 38, -9.057137783118e-01, 2.207860577176e-05, 2.5998e+02, 5.4208e+00, - 1DIAGNOSTIC, 39, -9.058440020629e-01, 2.174297230846e-05, 2.6540e+02, 5.4222e+00, - 1DIAGNOSTIC, 40, -9.059745482088e-01, 2.139595879565e-05, 2.7082e+02, 5.4248e+00, - 1DIAGNOSTIC, 41, -9.061081111205e-01, 2.101464957511e-05, 2.7625e+02, 5.4238e+00, - 1DIAGNOSTIC, 42, -9.062428277954e-01, 2.061625141908e-05, 2.8169e+02, 5.4443e+00, - 1DIAGNOSTIC, 43, -9.063777341738e-01, 2.022874444978e-05, 2.8711e+02, 5.4143e+00, - 1DIAGNOSTIC, 44, -9.065114205834e-01, 1.985379686170e-05, 2.9256e+02, 5.4539e+00, - 1DIAGNOSTIC, 45, -9.066455411899e-01, 1.949072328167e-05, 2.9800e+02, 5.4366e+00, - 1DIAGNOSTIC, 46, -9.067799928991e-01, 1.914164616597e-05, 3.0347e+02, 5.4771e+00, - 1DIAGNOSTIC, 47, -9.069137479466e-01, 1.879079190818e-05, 3.0892e+02, 5.4449e+00, - 1DIAGNOSTIC, 48, -9.070464879199e-01, 1.843286482111e-05, 3.1435e+02, 5.4318e+00, - 1DIAGNOSTIC, 49, -9.071787181632e-01, 1.805539293540e-05, 3.1978e+02, 5.4310e+00, - 1DIAGNOSTIC, 50, -9.073101345088e-01, 1.765584909994e-05, 3.2520e+02, 5.4195e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.734066532571e-01, 1.797693134862e+308, 3.6960e+02, 4.4395e+01, - 1DIAGNOSTIC, 2, -8.745468885170e-01, 1.797693134862e+308, 4.1366e+02, 4.4066e+01, - 1DIAGNOSTIC, 3, -8.767333644754e-01, 1.797693134862e+308, 4.5796e+02, 4.4302e+01, - 1DIAGNOSTIC, 4, -8.791812998630e-01, 1.797693134862e+308, 5.0226e+02, 4.4294e+01, - 1DIAGNOSTIC, 5, -8.814606467145e-01, 1.797693134862e+308, 5.4660e+02, 4.4342e+01, - 1DIAGNOSTIC, 6, -8.836233453387e-01, 1.797693134862e+308, 5.9077e+02, 4.4168e+01, - 1DIAGNOSTIC, 7, -8.852070650099e-01, 1.797693134862e+308, 6.3519e+02, 4.4427e+01, - 1DIAGNOSTIC, 8, -8.867177433280e-01, 1.797693134862e+308, 6.7931e+02, 4.4120e+01, - 1DIAGNOSTIC, 9, -8.879289151708e-01, 1.797693134862e+308, 7.2380e+02, 4.4488e+01, - 1DIAGNOSTIC, 10, -8.890981258440e-01, 1.213866430872e-03, 7.6805e+02, 4.4252e+01, - 1DIAGNOSTIC, 11, -8.902570843724e-01, 1.038360138439e-03, 8.1306e+02, 4.5011e+01, - 1DIAGNOSTIC, 12, -8.913523082324e-01, 8.584586692734e-04, 8.5719e+02, 4.4125e+01, - 1DIAGNOSTIC, 13, -8.923039578764e-01, 7.057767220264e-04, 9.0152e+02, 4.4327e+01, - 1DIAGNOSTIC, 14, -8.931534437174e-01, 5.859952164093e-04, 9.4570e+02, 4.4186e+01, - 1DIAGNOSTIC, 15, -8.939239355345e-01, 4.934269344388e-04, 9.9003e+02, 4.4324e+01, - 1DIAGNOSTIC, 16, -8.946380110214e-01, 4.245400218405e-04, 1.0346e+03, 4.4576e+01, - 1DIAGNOSTIC, 17, -8.950990803351e-01, 3.628841107798e-04, 1.0795e+03, 4.4874e+01, - 1DIAGNOSTIC, 18, -8.955456576118e-01, 3.093434619989e-04, 1.1241e+03, 4.4581e+01, - 1DIAGNOSTIC, 19, -8.959920464816e-01, 2.606347043345e-04, 1.1689e+03, 4.4868e+01, - 1DIAGNOSTIC, 20, -8.964326190902e-01, 2.181796839139e-04, 1.2138e+03, 4.4851e+01, - Elapsed time (stage 2): 1214 - - -Total elapsed time: 1268 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:00 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:00 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:02 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:07 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:10 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:10 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 14912 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:11 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:14 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:15 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 14956 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:15 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/anat/sub-PNC005_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:18 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:18 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15019 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:18 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15024 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:18 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:22 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:24 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:24 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:25 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:26 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:28 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:28 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:29 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:30 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:32 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/surf/sub-PNC005_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC005_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC005 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:33 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:43 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:54 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03/sub-PNC005_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC005 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:54 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC005 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:55 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC005_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC005 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:55 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15628 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:57 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc/sub-PNC005_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/xfm/sub-PNC005_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15661 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:58 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:43:58 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC005_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC005_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 70.633 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/logs/proc_func_18-03-2024-19043.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:44:04 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC005 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC005/ses-03/QC/sub-PNC005_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/5683_micapipe_proc-func_sub-PNC005_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC005* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 70.667 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC005_ses-03 -========================reprocessing without filter=================== -sub-PNC006_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC006 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC006 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC006 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC006 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:44:09 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:44:09 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-1_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:46:22 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:48:35 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 17:48:49 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.54 (mm) at sub-brick 16 -++ Max delta displ in automask = 0.13 (mm) at sub-brick 15 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:01:59 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:02:17 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-2_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:04:34 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:06:57 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-01/func/sub-PNC006_ses-01_task-rest_echo-3_bold.nii.gz is 44.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:09:25 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -1.108 -2.069 2.210 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 77.2 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -1.326 -2.600 4.232 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.4 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:14:28 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:15:02 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55716472d6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [105.102, 54.3661, -116.053] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5571645a4730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x557164744320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x557164730fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [79.9958, 113.5, -129.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557164736e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x557164f41230 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x557164f3f5c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [105.102, 54.3661, -116.053] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5571647333f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x557165b7b450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x557164f3dda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [79.9958, 113.5, -129.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55716473a360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x557166375780 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.333022981481e-01, 1.797693134862e+308, 4.3877e-02, 4.3877e-02, - 2DIAGNOSTIC, 2, -5.357407242847e-01, 1.797693134862e+308, 4.5150e-02, 1.2729e-03, - 2DIAGNOSTIC, 3, -5.392519648163e-01, 1.797693134862e+308, 4.6467e-02, 1.3170e-03, - 2DIAGNOSTIC, 4, -5.413059654357e-01, 1.797693134862e+308, 4.7742e-02, 1.2751e-03, - 2DIAGNOSTIC, 5, -5.427188800257e-01, 1.797693134862e+308, 4.9018e-02, 1.2760e-03, - 2DIAGNOSTIC, 6, -5.440067890388e-01, 1.797693134862e+308, 5.0267e-02, 1.2491e-03, - 2DIAGNOSTIC, 7, -5.450988265076e-01, 1.797693134862e+308, 5.1542e-02, 1.2748e-03, - 2DIAGNOSTIC, 8, -5.503154171733e-01, 1.797693134862e+308, 5.3326e-02, 1.7838e-03, - 2DIAGNOSTIC, 9, -5.573898811529e-01, 1.797693134862e+308, 5.4853e-02, 1.5271e-03, - 2DIAGNOSTIC, 10, -5.594162030043e-01, 2.860521657984e-03, 5.6460e-02, 1.6072e-03, - 2DIAGNOSTIC, 11, -5.648175532965e-01, 2.919600346917e-03, 5.7978e-02, 1.5180e-03, - 2DIAGNOSTIC, 12, -5.662107352552e-01, 2.867895922774e-03, 5.9758e-02, 1.7800e-03, - 2DIAGNOSTIC, 13, -5.719008668082e-01, 2.926725728404e-03, 6.1560e-02, 1.8020e-03, - 2DIAGNOSTIC, 14, -6.102686592397e-01, 4.170893629348e-03, 6.3102e-02, 1.5421e-03, - 2DIAGNOSTIC, 15, -6.223082427345e-01, 5.269919836440e-03, 6.5148e-02, 2.0461e-03, - 2DIAGNOSTIC, 16, -6.119511436537e-01, 5.465522995418e-03, 6.7617e-02, 2.4691e-03, - 2DIAGNOSTIC, 17, -6.064160460022e-01, 5.036018509499e-03, 6.9856e-02, 2.2390e-03, - 2DIAGNOSTIC, 18, -6.076325330268e-01, 4.369998874366e-03, 7.1605e-02, 1.7490e-03, - 2DIAGNOSTIC, 19, -6.091673258557e-01, 3.576140872294e-03, 7.3176e-02, 1.5712e-03, - 2DIAGNOSTIC, 20, -6.114410518929e-01, 2.630570188123e-03, 7.4737e-02, 1.5609e-03, - 2DIAGNOSTIC, 21, -6.147615700730e-01, 1.760656795609e-03, 7.6250e-02, 1.5130e-03, - 2DIAGNOSTIC, 22, -6.175905257187e-01, 9.191390026890e-04, 7.7791e-02, 1.5411e-03, - 2DIAGNOSTIC, 23, -6.171229563637e-01, 1.578205061904e-04, 7.9411e-02, 1.6198e-03, - 2DIAGNOSTIC, 24, -6.208253107705e-01, 2.996057697920e-04, 8.1699e-02, 2.2879e-03, - 2DIAGNOSTIC, 25, -6.223663482402e-01, 6.695731805208e-04, 8.3255e-02, 1.5559e-03, - 2DIAGNOSTIC, 26, -6.206193985066e-01, 7.215898567991e-04, 8.4821e-02, 1.5659e-03, - 2DIAGNOSTIC, 27, -6.222806141154e-01, 6.335645060413e-04, 8.7297e-02, 2.4760e-03, - 2DIAGNOSTIC, 28, -6.225653571000e-01, 5.183564862410e-04, 8.8815e-02, 1.5180e-03, - 2DIAGNOSTIC, 29, -6.254368823421e-01, 4.353505887472e-04, 9.0320e-02, 1.5049e-03, - 2DIAGNOSTIC, 30, -6.264444471800e-01, 3.676370746311e-04, 9.1839e-02, 1.5190e-03, - 2DIAGNOSTIC, 31, -6.282977752371e-01, 3.504301604603e-04, 9.3629e-02, 1.7900e-03, - 2DIAGNOSTIC, 32, -6.340019470144e-01, 4.305372381891e-04, 9.5170e-02, 1.5409e-03, - 2DIAGNOSTIC, 33, -6.424691419396e-01, 5.771002186308e-04, 9.6952e-02, 1.7822e-03, - 2DIAGNOSTIC, 34, -6.540000440442e-01, 8.704293297761e-04, 9.8728e-02, 1.7760e-03, - 2DIAGNOSTIC, 35, -6.478132226202e-01, 9.986756593452e-04, 1.0099e-01, 2.2619e-03, - 2DIAGNOSTIC, 36, -6.506483054378e-01, 1.044079199353e-03, 1.0411e-01, 3.1180e-03, - 2DIAGNOSTIC, 37, -6.507946409019e-01, 1.010199729006e-03, 1.0561e-01, 1.5049e-03, - 2DIAGNOSTIC, 38, -6.519727317171e-01, 8.965680445682e-04, 1.0711e-01, 1.4942e-03, - 2DIAGNOSTIC, 39, -6.540606832603e-01, 7.628742125262e-04, 1.0913e-01, 2.0280e-03, - 2DIAGNOSTIC, 40, -6.579713807828e-01, 6.236956048925e-04, 1.1174e-01, 2.6088e-03, - 2DIAGNOSTIC, 41, -6.651930312816e-01, 5.369599975264e-04, 1.1430e-01, 2.5520e-03, - 2DIAGNOSTIC, 42, -6.727363361417e-01, 5.476211915537e-04, 1.1680e-01, 2.5029e-03, - 2DIAGNOSTIC, 43, -6.778089757636e-01, 6.478839849334e-04, 1.1907e-01, 2.2759e-03, - 2DIAGNOSTIC, 44, -6.792903171208e-01, 8.216643945678e-04, 1.2041e-01, 1.3340e-03, - 2DIAGNOSTIC, 45, -6.807097673547e-01, 8.590048164669e-04, 1.2200e-01, 1.5919e-03, - 2DIAGNOSTIC, 46, -6.856633244660e-01, 8.904316478742e-04, 1.2405e-01, 2.0471e-03, - 2DIAGNOSTIC, 47, -6.862251357124e-01, 8.402134838205e-04, 1.2565e-01, 1.5988e-03, - 2DIAGNOSTIC, 48, -6.863113237888e-01, 7.247852129053e-04, 1.2706e-01, 1.4119e-03, - 2DIAGNOSTIC, 49, -6.867788529963e-01, 5.706525232272e-04, 1.2867e-01, 1.6150e-03, - 2DIAGNOSTIC, 50, -6.864630154952e-01, 4.011252138428e-04, 1.3007e-01, 1.4000e-03, - 2DIAGNOSTIC, 51, -6.864393606370e-01, 2.635196328078e-04, 1.3188e-01, 1.8110e-03, - 2DIAGNOSTIC, 52, -6.863733281795e-01, 1.712801578451e-04, 1.3348e-01, 1.5931e-03, - 2DIAGNOSTIC, 53, -6.864237244777e-01, 1.110906354551e-04, 1.3528e-01, 1.8032e-03, - 2DIAGNOSTIC, 54, -6.853707565365e-01, 4.654902545280e-05, 1.3686e-01, 1.5762e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.461653528604e-01, 1.797693134862e+308, 1.8600e-01, 4.9139e-02, - 2DIAGNOSTIC, 2, -3.460906214217e-01, 1.797693134862e+308, 1.8882e-01, 2.8260e-03, - 2DIAGNOSTIC, 3, -3.475166469894e-01, 1.797693134862e+308, 1.9210e-01, 3.2749e-03, - 2DIAGNOSTIC, 4, -3.483850620525e-01, 1.797693134862e+308, 1.9441e-01, 2.3181e-03, - 2DIAGNOSTIC, 5, -3.490433922922e-01, 1.797693134862e+308, 1.9672e-01, 2.3100e-03, - 2DIAGNOSTIC, 6, -3.506735413959e-01, 1.797693134862e+308, 1.9936e-01, 2.6400e-03, - 2DIAGNOSTIC, 7, -3.542261129750e-01, 1.797693134862e+308, 2.0184e-01, 2.4750e-03, - 2DIAGNOSTIC, 8, -3.598033376577e-01, 1.797693134862e+308, 2.0510e-01, 3.2609e-03, - 2DIAGNOSTIC, 9, -3.616299314182e-01, 1.797693134862e+308, 2.0739e-01, 2.2919e-03, - 2DIAGNOSTIC, 10, -3.658399368660e-01, 3.616649194148e-03, 2.1157e-01, 4.1790e-03, - 2DIAGNOSTIC, 11, -3.699694846017e-01, 3.996733682666e-03, 2.1408e-01, 2.5082e-03, - 2DIAGNOSTIC, 12, -3.716403187972e-01, 4.049200487458e-03, 2.1657e-01, 2.4869e-03, - 2DIAGNOSTIC, 13, -3.732026992418e-01, 3.908682487149e-03, 2.1906e-01, 2.4960e-03, - 2DIAGNOSTIC, 14, -3.747878804016e-01, 3.575175247444e-03, 2.2171e-01, 2.6510e-03, - 2DIAGNOSTIC, 15, -3.770408741460e-01, 3.114624580093e-03, 2.2457e-01, 2.8520e-03, - 2DIAGNOSTIC, 16, -3.833085303894e-01, 2.809687843462e-03, 2.2838e-01, 3.8171e-03, - 2DIAGNOSTIC, 17, -3.838056983688e-01, 2.460402938454e-03, 2.3091e-01, 2.5249e-03, - 2DIAGNOSTIC, 18, -3.841794275441e-01, 2.189339807306e-03, 2.3372e-01, 2.8169e-03, - 2DIAGNOSTIC, 19, -3.843292595593e-01, 1.827732926287e-03, 2.3713e-01, 3.4039e-03, - 2DIAGNOSTIC, 20, -3.845512418229e-01, 1.501891056388e-03, 2.3959e-01, 2.4610e-03, - 2DIAGNOSTIC, 21, -3.846638627209e-01, 1.221378470274e-03, 2.4214e-01, 2.5461e-03, - 2DIAGNOSTIC, 22, -3.848264860198e-01, 9.176293176730e-04, 2.4503e-01, 2.8899e-03, - 2DIAGNOSTIC, 23, -3.851210855283e-01, 6.207597681379e-04, 2.4785e-01, 2.8260e-03, - 2DIAGNOSTIC, 24, -3.851890635306e-01, 3.451283548110e-04, 2.5089e-01, 3.0360e-03, - 2DIAGNOSTIC, 25, -3.852532612475e-01, 1.263450169660e-04, 2.5368e-01, 2.7931e-03, - 2DIAGNOSTIC, 26, -3.853015139710e-01, 9.959981336657e-05, 2.5618e-01, 2.5001e-03, - 2DIAGNOSTIC, 27, -3.856924739692e-01, 9.061572326329e-05, 2.5905e-01, 2.8739e-03, - 2DIAGNOSTIC, 28, -3.864857457968e-01, 1.053530554570e-04, 2.6280e-01, 3.7482e-03, - 2DIAGNOSTIC, 29, -3.865043571334e-01, 1.130673817766e-04, 2.6525e-01, 2.4471e-03, - 2DIAGNOSTIC, 30, -3.863379003171e-01, 1.115357286139e-04, 2.6809e-01, 2.8441e-03, - 2DIAGNOSTIC, 31, -3.864099508865e-01, 1.045838690611e-04, 2.7057e-01, 2.4791e-03, - 2DIAGNOSTIC, 32, -3.863581791167e-01, 9.044314829652e-05, 2.7341e-01, 2.8338e-03, - 2DIAGNOSTIC, 33, -3.865135527886e-01, 7.872564258386e-05, 2.7594e-01, 2.5289e-03, - 2DIAGNOSTIC, 34, -3.867013421861e-01, 6.603091586226e-05, 2.7939e-01, 3.4571e-03, - 2DIAGNOSTIC, 35, -3.871577878539e-01, 5.951055372516e-05, 2.8247e-01, 3.0739e-03, - 2DIAGNOSTIC, 36, -3.878468280851e-01, 6.311649841884e-05, 2.8571e-01, 3.2439e-03, - 2DIAGNOSTIC, 37, -3.882397373104e-01, 7.590951189892e-05, 2.8860e-01, 2.8918e-03, - 2DIAGNOSTIC, 38, -3.885082410569e-01, 1.020141886257e-04, 2.9145e-01, 2.8450e-03, - 2DIAGNOSTIC, 39, -3.890602985360e-01, 1.283107612986e-04, 2.9397e-01, 2.5260e-03, - 2DIAGNOSTIC, 40, -3.900370807414e-01, 1.560689697354e-04, 2.9681e-01, 2.8322e-03, - 2DIAGNOSTIC, 41, -3.907299967927e-01, 1.812308061352e-04, 3.0002e-01, 3.2182e-03, - 2DIAGNOSTIC, 42, -3.913834073772e-01, 1.986583968627e-04, 3.0256e-01, 2.5330e-03, - 2DIAGNOSTIC, 43, -3.922880858180e-01, 2.150716788896e-04, 3.0512e-01, 2.5599e-03, - 2DIAGNOSTIC, 44, -3.950275822175e-01, 2.599442303703e-04, 3.0802e-01, 2.9011e-03, - 2DIAGNOSTIC, 45, -3.987342367902e-01, 3.459578075111e-04, 3.1156e-01, 3.5472e-03, - 2DIAGNOSTIC, 46, -3.991686745339e-01, 4.121366418117e-04, 3.1404e-01, 2.4781e-03, - 2DIAGNOSTIC, 47, -4.018275992127e-01, 4.858145065171e-04, 3.1655e-01, 2.5101e-03, - 2DIAGNOSTIC, 48, -4.031763608646e-01, 5.345400962191e-04, 3.2004e-01, 3.4852e-03, - 2DIAGNOSTIC, 49, -4.045991353098e-01, 5.590628308779e-04, 3.2284e-01, 2.8040e-03, - 2DIAGNOSTIC, 50, -4.050726395436e-01, 5.499439838268e-04, 3.2536e-01, 2.5191e-03, - 2DIAGNOSTIC, 51, -4.069277643384e-01, 5.262629343369e-04, 3.2834e-01, 2.9790e-03, - 2DIAGNOSTIC, 52, -4.092765052819e-01, 4.960155498001e-04, 3.3138e-01, 3.0382e-03, - 2DIAGNOSTIC, 53, -4.115802561405e-01, 4.630477452861e-04, 3.3470e-01, 3.3209e-03, - 2DIAGNOSTIC, 54, -4.140474643907e-01, 4.572809445750e-04, 3.3712e-01, 2.4240e-03, - 2DIAGNOSTIC, 55, -4.244222742097e-01, 5.976726023199e-04, 3.3961e-01, 2.4869e-03, - 2DIAGNOSTIC, 56, -4.532536238414e-01, 1.056266225475e-03, 3.4203e-01, 2.4221e-03, - 2DIAGNOSTIC, 57, -4.701452699234e-01, 1.636693441097e-03, 3.4591e-01, 3.8760e-03, - 2DIAGNOSTIC, 58, -4.785486633133e-01, 2.158236159014e-03, 3.4880e-01, 2.8939e-03, - 2DIAGNOSTIC, 59, -4.778757389134e-01, 2.465586861704e-03, 3.5126e-01, 2.4588e-03, - 2DIAGNOSTIC, 60, -4.876845951102e-01, 2.649102636775e-03, 3.5383e-01, 2.5671e-03, - 2DIAGNOSTIC, 61, -5.078170801232e-01, 2.821103500354e-03, 3.5655e-01, 2.7261e-03, - 2DIAGNOSTIC, 62, -5.655586969483e-01, 3.396586268847e-03, 3.5979e-01, 3.2389e-03, - 2DIAGNOSTIC, 63, -5.927130615972e-01, 3.940197273419e-03, 3.6307e-01, 3.2730e-03, - 2DIAGNOSTIC, 64, -5.945216034937e-01, 4.134938545654e-03, 3.6619e-01, 3.1250e-03, - 2DIAGNOSTIC, 65, -5.958861812410e-01, 4.057491553856e-03, 3.6905e-01, 2.8548e-03, - 2DIAGNOSTIC, 66, -5.961710739688e-01, 3.896897022695e-03, 3.7289e-01, 3.8421e-03, - 2DIAGNOSTIC, 67, -5.962721636460e-01, 3.533507209308e-03, 3.7545e-01, 2.5620e-03, - 2DIAGNOSTIC, 68, -5.967802510597e-01, 2.935397785809e-03, 3.7838e-01, 2.9302e-03, - 2DIAGNOSTIC, 69, -5.969437654253e-01, 2.083501147140e-03, 3.8095e-01, 2.5649e-03, - 2DIAGNOSTIC, 70, -5.969993450799e-01, 1.167578525133e-03, 3.8380e-01, 2.8548e-03, - 2DIAGNOSTIC, 71, -5.970559651084e-01, 3.559006434801e-04, 3.8631e-01, 2.5051e-03, - 2DIAGNOSTIC, 72, -5.968339338078e-01, 7.108424711240e-05, 3.8907e-01, 2.7661e-03, - 2DIAGNOSTIC, 73, -5.969250079954e-01, 3.917411586138e-05, 3.9189e-01, 2.8222e-03, - 2DIAGNOSTIC, 74, -5.971356781746e-01, 2.248493078473e-05, 3.9534e-01, 3.4440e-03, - 2DIAGNOSTIC, 75, -5.973073897763e-01, 1.775527787773e-05, 3.9811e-01, 2.7699e-03, - 2DIAGNOSTIC, 76, -5.972917959325e-01, 1.391651399184e-05, 4.0062e-01, 2.5120e-03, - 2DIAGNOSTIC, 77, -5.973987600207e-01, 1.067741518081e-05, 4.0388e-01, 3.2580e-03, - 2DIAGNOSTIC, 78, -5.975399055625e-01, 1.195227627107e-05, 4.0644e-01, 2.5620e-03, - 2DIAGNOSTIC, 79, -5.977026726423e-01, 1.466276926566e-05, 4.0931e-01, 2.8749e-03, - 2DIAGNOSTIC, 80, -5.982689327271e-01, 2.087187724027e-05, 4.1213e-01, 2.8150e-03, - 2DIAGNOSTIC, 81, -5.983791045225e-01, 2.622505037810e-05, 4.1519e-01, 3.0560e-03, - 2DIAGNOSTIC, 82, -5.983899154975e-01, 2.733739312314e-05, 4.1789e-01, 2.7041e-03, - 2DIAGNOSTIC, 83, -5.983980481359e-01, 2.661385910631e-05, 4.2035e-01, 2.4621e-03, - 2DIAGNOSTIC, 84, -5.984036215152e-01, 2.497885631093e-05, 4.2284e-01, 2.4862e-03, - 2DIAGNOSTIC, 85, -5.984629065814e-01, 2.270629894414e-05, 4.2561e-01, 2.7750e-03, - 2DIAGNOSTIC, 86, -5.985095566772e-01, 1.856089420950e-05, 4.2933e-01, 3.7160e-03, - 2DIAGNOSTIC, 87, -5.985493334030e-01, 1.390026806959e-05, 4.3181e-01, 2.4800e-03, - 2DIAGNOSTIC, 88, -5.985597268955e-01, 9.190435646601e-06, 4.3430e-01, 2.4939e-03, - 2DIAGNOSTIC, 89, -5.986125869242e-01, 5.187550662202e-06, 4.3685e-01, 2.5511e-03, - 2DIAGNOSTIC, 90, -5.986078732976e-01, 4.680497487268e-06, 4.3968e-01, 2.8229e-03, - 2DIAGNOSTIC, 91, -5.986064102273e-01, 4.516924947589e-06, 4.4251e-01, 2.8338e-03, - 2DIAGNOSTIC, 92, -5.986709687206e-01, 4.475813361229e-06, 4.4537e-01, 2.8572e-03, - 2DIAGNOSTIC, 93, -5.986772818576e-01, 4.135154743972e-06, 4.4786e-01, 2.4910e-03, - 2DIAGNOSTIC, 94, -5.987806774800e-01, 4.151538725820e-06, 4.5022e-01, 2.3620e-03, - 2DIAGNOSTIC, 95, -5.991975435138e-01, 6.849755104479e-06, 4.5452e-01, 4.2961e-03, - 2DIAGNOSTIC, 96, -5.993299435173e-01, 9.921559653755e-06, 4.5701e-01, 2.4951e-03, - 2DIAGNOSTIC, 97, -5.991067121193e-01, 1.086170471236e-05, 4.5995e-01, 2.9390e-03, - 2DIAGNOSTIC, 98, -5.991192633117e-01, 1.098759287036e-05, 4.6298e-01, 3.0301e-03, - 2DIAGNOSTIC, 99, -5.991182000614e-01, 1.038618009465e-05, 4.6615e-01, 3.1650e-03, - 2DIAGNOSTIC, 100, -5.991681734625e-01, 9.045770286396e-06, 4.7075e-01, 4.6079e-03, - 2DIAGNOSTIC, 101, -5.991685929218e-01, 6.872500141435e-06, 4.7340e-01, 2.6510e-03, - 2DIAGNOSTIC, 102, -5.991722897636e-01, 4.596304550894e-06, 4.7638e-01, 2.9759e-03, - 2DIAGNOSTIC, 103, -5.991495300095e-01, 1.906594635625e-06, 4.7888e-01, 2.5032e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.716271778872e-01, 1.797693134862e+308, 5.5038e-01, 7.1494e-02, - 2DIAGNOSTIC, 2, -4.719143959664e-01, 1.797693134862e+308, 5.6350e-01, 1.3121e-02, - 2DIAGNOSTIC, 3, -4.721164672927e-01, 1.797693134862e+308, 5.7669e-01, 1.3191e-02, - 2DIAGNOSTIC, 4, -4.725626208236e-01, 1.797693134862e+308, 5.9198e-01, 1.5287e-02, - 2DIAGNOSTIC, 5, -4.731047863412e-01, 1.797693134862e+308, 6.0581e-01, 1.3832e-02, - 2DIAGNOSTIC, 6, -4.732372033106e-01, 1.797693134862e+308, 6.2349e-01, 1.7686e-02, - 2DIAGNOSTIC, 7, -4.734919409094e-01, 1.797693134862e+308, 6.3749e-01, 1.3998e-02, - 2DIAGNOSTIC, 8, -4.739791569987e-01, 1.797693134862e+308, 6.5185e-01, 1.4354e-02, - 2DIAGNOSTIC, 9, -4.745543267081e-01, 1.797693134862e+308, 6.6600e-01, 1.4155e-02, - 2DIAGNOSTIC, 10, -4.746354944151e-01, 4.283719069131e-04, 6.8151e-01, 1.5504e-02, - 2DIAGNOSTIC, 11, -4.748411573201e-01, 3.837355281129e-04, 7.0036e-01, 1.8854e-02, - 2DIAGNOSTIC, 12, -4.752883939947e-01, 3.494524470517e-04, 7.1636e-01, 1.5999e-02, - 2DIAGNOSTIC, 13, -4.753136450612e-01, 2.985245927583e-04, 7.3570e-01, 1.9341e-02, - 2DIAGNOSTIC, 14, -4.755987147667e-01, 2.587531133863e-04, 7.4982e-01, 1.4125e-02, - 2DIAGNOSTIC, 15, -4.759825987548e-01, 2.380047023952e-04, 7.6381e-01, 1.3990e-02, - 2DIAGNOSTIC, 16, -4.762839060138e-01, 2.143067394736e-04, 7.7933e-01, 1.5515e-02, - 2DIAGNOSTIC, 17, -4.763257645033e-01, 1.838505406325e-04, 7.9467e-01, 1.5338e-02, - 2DIAGNOSTIC, 18, -4.763869132202e-01, 1.580191688805e-04, 8.0968e-01, 1.5010e-02, - 2DIAGNOSTIC, 19, -4.763220521643e-01, 1.366848485975e-04, 8.2784e-01, 1.8164e-02, - 2DIAGNOSTIC, 20, -4.765567141766e-01, 1.142403806992e-04, 8.4110e-01, 1.3258e-02, - 2DIAGNOSTIC, 21, -4.766784788541e-01, 9.218626855594e-05, 8.5515e-01, 1.4052e-02, - 2DIAGNOSTIC, 22, -4.768707807093e-01, 8.122583629413e-05, 8.6883e-01, 1.3680e-02, - 2DIAGNOSTIC, 23, -4.769020636294e-01, 6.523696607330e-05, 8.8572e-01, 1.6886e-02, - 2DIAGNOSTIC, 24, -4.768937713613e-01, 5.142147644660e-05, 8.9949e-01, 1.3769e-02, - 2DIAGNOSTIC, 25, -4.769045981377e-01, 4.327908812215e-05, 9.1157e-01, 1.2082e-02, - 2DIAGNOSTIC, 26, -4.769097109924e-01, 3.874969449556e-05, 9.2385e-01, 1.2280e-02, - 2DIAGNOSTIC, 27, -4.769211789797e-01, 3.214543497568e-05, 9.3598e-01, 1.2134e-02, - 2DIAGNOSTIC, 28, -4.769297282060e-01, 2.469798511136e-05, 9.4799e-01, 1.2006e-02, - 2DIAGNOSTIC, 29, -4.769489959960e-01, 1.455646901510e-05, 9.6015e-01, 1.2163e-02, - 2DIAGNOSTIC, 30, -4.769928215548e-01, 9.350165724002e-06, 9.7544e-01, 1.5285e-02, - 2DIAGNOSTIC, 31, -4.769614751368e-01, 5.318547588090e-06, 9.9224e-01, 1.6800e-02, - 2DIAGNOSTIC, 32, -4.769972281012e-01, 5.406425334913e-06, 1.0358e+00, 4.3516e-02, - 2DIAGNOSTIC, 33, -4.769972280810e-01, 5.628513337394e-06, 1.0486e+00, 1.2857e-02, - 2DIAGNOSTIC, 34, -4.769972280979e-01, 5.237532551640e-06, 1.0622e+00, 1.3557e-02, - 2DIAGNOSTIC, 35, -4.769972281265e-01, 4.645729777288e-06, 1.0743e+00, 1.2128e-02, - 2DIAGNOSTIC, 36, -4.769972281748e-01, 3.821972443460e-06, 1.0866e+00, 1.2299e-02, - 2DIAGNOSTIC, 37, -4.769972282561e-01, 2.952209383136e-06, 1.0987e+00, 1.2114e-02, - 2DIAGNOSTIC, 38, -4.769972283929e-01, 2.053209896640e-06, 1.1114e+00, 1.2692e-02, - 2DIAGNOSTIC, 39, -4.769972286221e-01, 1.363835445824e-06, 1.1245e+00, 1.3138e-02, - 2DIAGNOSTIC, 40, -4.769972290037e-01, 1.331392574730e-06, 1.1380e+00, 1.3437e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.030147928717e-01, 1.797693134862e+308, 1.3369e+00, 1.9891e-01, - Elapsed time (stage 0): 1.3662e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.606264957919e-01, 1.797693134862e+308, 4.8264e-02, 4.8264e-02, - 2DIAGNOSTIC, 2, -9.617454070999e-01, 1.797693134862e+308, 5.0142e-02, 1.8780e-03, - 2DIAGNOSTIC, 3, -9.660157757696e-01, 1.797693134862e+308, 5.2015e-02, 1.8730e-03, - 2DIAGNOSTIC, 4, -9.729072188410e-01, 1.797693134862e+308, 5.3844e-02, 1.8291e-03, - 2DIAGNOSTIC, 5, -9.818906491634e-01, 1.797693134862e+308, 5.5639e-02, 1.7948e-03, - 2DIAGNOSTIC, 6, -9.927342357607e-01, 1.797693134862e+308, 5.7806e-02, 2.1670e-03, - 2DIAGNOSTIC, 7, -1.002239626943e+00, 1.797693134862e+308, 6.1038e-02, 3.2320e-03, - 2DIAGNOSTIC, 8, -1.006976078938e+00, 1.797693134862e+308, 6.2897e-02, 1.8589e-03, - 2DIAGNOSTIC, 9, -1.009287119475e+00, 1.797693134862e+308, 6.5106e-02, 2.2089e-03, - 2DIAGNOSTIC, 10, -1.010594230034e+00, 3.913978486440e-03, 6.7818e-02, 2.7120e-03, - 2DIAGNOSTIC, 11, -1.010782402601e+00, 3.316633751368e-03, 7.0487e-02, 2.6689e-03, - 2DIAGNOSTIC, 12, -1.011617016887e+00, 2.569317895054e-03, 7.3142e-02, 2.6548e-03, - 2DIAGNOSTIC, 13, -1.012201049499e+00, 1.813914536024e-03, 7.5490e-02, 2.3479e-03, - 2DIAGNOSTIC, 14, -1.018164008967e+00, 1.265443738065e-03, 7.7816e-02, 2.3260e-03, - 2DIAGNOSTIC, 15, -1.041954295275e+00, 1.292463026114e-03, 8.1200e-02, 3.3841e-03, - 2DIAGNOSTIC, 16, -1.048093950744e+00, 1.485045842328e-03, 8.3861e-02, 2.6610e-03, - 2DIAGNOSTIC, 17, -1.049703621120e+00, 1.704609735585e-03, 8.6225e-02, 2.3639e-03, - 2DIAGNOSTIC, 18, -1.052281585158e+00, 1.861588098234e-03, 8.7849e-02, 1.6241e-03, - 2DIAGNOSTIC, 19, -1.060526738659e+00, 1.982618018568e-03, 9.0148e-02, 2.2991e-03, - 2DIAGNOSTIC, 20, -1.064381531003e+00, 1.970910882625e-03, 9.1920e-02, 1.7719e-03, - 2DIAGNOSTIC, 21, -1.066550521484e+00, 1.807476446945e-03, 9.3451e-02, 1.5318e-03, - 2DIAGNOSTIC, 22, -1.074485837175e+00, 1.608643722737e-03, 9.4980e-02, 1.5290e-03, - 2DIAGNOSTIC, 23, -1.084244706957e+00, 1.402766620389e-03, 9.7244e-02, 2.2631e-03, - 2DIAGNOSTIC, 24, -1.087384863866e+00, 1.178976201429e-03, 9.9033e-02, 1.7898e-03, - 2DIAGNOSTIC, 25, -1.087250255459e+00, 1.125462430269e-03, 1.0104e-01, 2.0061e-03, - 2DIAGNOSTIC, 26, -1.086529868816e+00, 1.031031841797e-03, 1.0282e-01, 1.7760e-03, - 2DIAGNOSTIC, 27, -1.087701160065e+00, 8.753709296525e-04, 1.0436e-01, 1.5450e-03, - 2DIAGNOSTIC, 28, -1.087938997089e+00, 6.728474253634e-04, 1.0593e-01, 1.5652e-03, - 2DIAGNOSTIC, 29, -1.089239297607e+00, 5.117000211152e-04, 1.0746e-01, 1.5380e-03, - 2DIAGNOSTIC, 30, -1.093203029351e+00, 3.866774984324e-04, 1.0922e-01, 1.7540e-03, - 2DIAGNOSTIC, 31, -1.097509144279e+00, 2.896051287933e-04, 1.1079e-01, 1.5769e-03, - 2DIAGNOSTIC, 32, -1.100018021238e+00, 2.581311119518e-04, 1.1281e-01, 2.0192e-03, - 2DIAGNOSTIC, 33, -1.103633980645e+00, 3.142760780878e-04, 1.1502e-01, 2.2070e-03, - 2DIAGNOSTIC, 34, -1.103332032766e+00, 3.597639171592e-04, 1.1687e-01, 1.8480e-03, - 2DIAGNOSTIC, 35, -1.104555536665e+00, 3.772584418750e-04, 1.1873e-01, 1.8630e-03, - 2DIAGNOSTIC, 36, -1.105542263069e+00, 3.593471536400e-04, 1.2064e-01, 1.9059e-03, - 2DIAGNOSTIC, 37, -1.106638573161e+00, 3.248733403680e-04, 1.2287e-01, 2.2359e-03, - 2DIAGNOSTIC, 38, -1.107740757600e+00, 2.711218650336e-04, 1.2479e-01, 1.9150e-03, - 2DIAGNOSTIC, 39, -1.108526908100e+00, 2.087567108331e-04, 1.2672e-01, 1.9338e-03, - 2DIAGNOSTIC, 40, -1.110011931537e+00, 1.662993243669e-04, 1.2829e-01, 1.5709e-03, - 2DIAGNOSTIC, 41, -1.116004481748e+00, 1.774388324932e-04, 1.3012e-01, 1.8280e-03, - 2DIAGNOSTIC, 42, -1.117764812937e+00, 1.968911162187e-04, 1.3192e-01, 1.7998e-03, - 2DIAGNOSTIC, 43, -1.118721007782e+00, 2.256200809776e-04, 1.3472e-01, 2.7940e-03, - 2DIAGNOSTIC, 44, -1.118002372066e+00, 2.256694217037e-04, 1.3649e-01, 1.7731e-03, - 2DIAGNOSTIC, 45, -1.118212904023e+00, 2.128511797792e-04, 1.3804e-01, 1.5502e-03, - 2DIAGNOSTIC, 46, -1.118992268673e+00, 1.899382615772e-04, 1.3957e-01, 1.5271e-03, - 2DIAGNOSTIC, 47, -1.119829331751e+00, 1.604711732696e-04, 1.4112e-01, 1.5521e-03, - 2DIAGNOSTIC, 48, -1.120534169897e+00, 1.274103274764e-04, 1.4265e-01, 1.5352e-03, - 2DIAGNOSTIC, 49, -1.121311312274e+00, 9.252568079006e-05, 1.4419e-01, 1.5390e-03, - 2DIAGNOSTIC, 50, -1.122387936174e+00, 6.322654082376e-05, 1.4624e-01, 2.0521e-03, - 2DIAGNOSTIC, 51, -1.121769516873e+00, 5.679350765990e-05, 1.4830e-01, 2.0542e-03, - 2DIAGNOSTIC, 52, -1.121907175809e+00, 5.490209994269e-05, 1.4987e-01, 1.5769e-03, - 2DIAGNOSTIC, 53, -1.122359846499e+00, 5.506724213390e-05, 1.5143e-01, 1.5569e-03, - 2DIAGNOSTIC, 54, -1.122606364824e+00, 4.756427484360e-05, 1.5301e-01, 1.5779e-03, - 2DIAGNOSTIC, 55, -1.121780222295e+00, 3.278318770129e-05, 1.5455e-01, 1.5368e-03, - 2DIAGNOSTIC, 56, -1.122613259894e+00, 2.327155438478e-05, 1.5654e-01, 1.9908e-03, - 2DIAGNOSTIC, 57, -1.121807208981e+00, 1.196103111484e-05, 1.5835e-01, 1.8110e-03, - 2DIAGNOSTIC, 58, -1.122106770275e+00, 4.506916728885e-06, 1.5992e-01, 1.5681e-03, - 2DIAGNOSTIC, 59, -1.122890896160e+00, 3.740241919303e-06, 1.6151e-01, 1.5950e-03, - 2DIAGNOSTIC, 60, -1.127900815712e+00, 2.951467719992e-05, 1.6405e-01, 2.5380e-03, - 2DIAGNOSTIC, 61, -1.130182998966e+00, 5.824905215040e-05, 1.6564e-01, 1.5919e-03, - 2DIAGNOSTIC, 62, -1.130704123040e+00, 8.323752312829e-05, 1.6740e-01, 1.7538e-03, - 2DIAGNOSTIC, 63, -1.131383995683e+00, 1.045352457904e-04, 1.6921e-01, 1.8120e-03, - 2DIAGNOSTIC, 64, -1.131946989752e+00, 1.185053312340e-04, 1.7077e-01, 1.5631e-03, - 2DIAGNOSTIC, 65, -1.133625676169e+00, 1.236158223100e-04, 1.7235e-01, 1.5750e-03, - 2DIAGNOSTIC, 66, -1.134486752082e+00, 1.232627954765e-04, 1.7466e-01, 2.3119e-03, - 2DIAGNOSTIC, 67, -1.135001720768e+00, 1.102232423647e-04, 1.7623e-01, 1.5769e-03, - 2DIAGNOSTIC, 68, -1.135441602953e+00, 9.019188944594e-05, 1.7776e-01, 1.5268e-03, - 2DIAGNOSTIC, 69, -1.136174254038e+00, 6.744473965782e-05, 1.7976e-01, 2.0030e-03, - 2DIAGNOSTIC, 70, -1.136386720998e+00, 5.815363418789e-05, 1.8156e-01, 1.7951e-03, - 2DIAGNOSTIC, 71, -1.136590266860e+00, 5.271238204653e-05, 1.8355e-01, 1.9901e-03, - 2DIAGNOSTIC, 72, -1.136988624531e+00, 4.577247513740e-05, 1.8532e-01, 1.7750e-03, - 2DIAGNOSTIC, 73, -1.138479032710e+00, 4.244312109687e-05, 1.8705e-01, 1.7281e-03, - 2DIAGNOSTIC, 74, -1.138778950186e+00, 3.793013584472e-05, 1.8855e-01, 1.4939e-03, - 2DIAGNOSTIC, 75, -1.138912601467e+00, 3.623380087608e-05, 1.9029e-01, 1.7400e-03, - 2DIAGNOSTIC, 76, -1.139042348258e+00, 3.460779848332e-05, 1.9211e-01, 1.8201e-03, - 2DIAGNOSTIC, 77, -1.139146007632e+00, 3.178983009310e-05, 1.9387e-01, 1.7598e-03, - 2DIAGNOSTIC, 78, -1.139185564550e+00, 2.748368415364e-05, 1.9564e-01, 1.7779e-03, - 2DIAGNOSTIC, 79, -1.139244564472e+00, 2.327210374292e-05, 1.9718e-01, 1.5390e-03, - 2DIAGNOSTIC, 80, -1.139411025975e+00, 1.826324017599e-05, 1.9871e-01, 1.5290e-03, - 2DIAGNOSTIC, 81, -1.140051521077e+00, 1.438934047466e-05, 2.0114e-01, 2.4331e-03, - 2DIAGNOSTIC, 82, -1.140439786959e+00, 1.158706612987e-05, 2.0269e-01, 1.5469e-03, - 2DIAGNOSTIC, 83, -1.140520075487e+00, 1.267626914746e-05, 2.0471e-01, 2.0199e-03, - 2DIAGNOSTIC, 84, -1.140571928126e+00, 1.367364009295e-05, 2.0629e-01, 1.5819e-03, - 2DIAGNOSTIC, 85, -1.140627923296e+00, 1.393891234355e-05, 2.0829e-01, 1.9948e-03, - 2DIAGNOSTIC, 86, -1.140644648361e+00, 1.328832967279e-05, 2.0984e-01, 1.5519e-03, - 2DIAGNOSTIC, 87, -1.140690162938e+00, 1.183376668282e-05, 2.1136e-01, 1.5180e-03, - 2DIAGNOSTIC, 88, -1.140782108222e+00, 9.716644170672e-06, 2.1337e-01, 2.0092e-03, - 2DIAGNOSTIC, 89, -1.140798157046e+00, 6.982543683628e-06, 2.1488e-01, 1.5090e-03, - 2DIAGNOSTIC, 90, -1.140823810128e+00, 4.190766518702e-06, 2.1638e-01, 1.5068e-03, - 2DIAGNOSTIC, 91, -1.140878119988e+00, 3.045804610836e-06, 2.1924e-01, 2.8610e-03, - 2DIAGNOSTIC, 92, -1.140881234290e+00, 2.760912014343e-06, 2.2079e-01, 1.5440e-03, - 2DIAGNOSTIC, 93, -1.140891952390e+00, 2.499727763424e-06, 2.2236e-01, 1.5721e-03, - 2DIAGNOSTIC, 94, -1.140900546623e+00, 2.201211974992e-06, 2.2389e-01, 1.5321e-03, - 2DIAGNOSTIC, 95, -1.140904305611e+00, 1.895170327027e-06, 2.2544e-01, 1.5430e-03, - 2DIAGNOSTIC, 96, -1.140906391361e+00, 1.494559640250e-06, 2.2696e-01, 1.5278e-03, - 2DIAGNOSTIC, 97, -1.140911919506e+00, 1.121332348144e-06, 2.2848e-01, 1.5140e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.375584760306e-01, 1.797693134862e+308, 2.7465e-01, 4.6168e-02, - 2DIAGNOSTIC, 2, -7.379800264383e-01, 1.797693134862e+308, 2.7817e-01, 3.5219e-03, - 2DIAGNOSTIC, 3, -7.397032696446e-01, 1.797693134862e+308, 2.8124e-01, 3.0692e-03, - 2DIAGNOSTIC, 4, -7.420562920342e-01, 1.797693134862e+308, 2.8367e-01, 2.4321e-03, - 2DIAGNOSTIC, 5, -7.447820299303e-01, 1.797693134862e+308, 2.8609e-01, 2.4252e-03, - 2DIAGNOSTIC, 6, -7.521346021322e-01, 1.797693134862e+308, 2.8849e-01, 2.3949e-03, - 2DIAGNOSTIC, 7, -7.541897312967e-01, 1.797693134862e+308, 2.9091e-01, 2.4261e-03, - 2DIAGNOSTIC, 8, -7.579906579639e-01, 1.797693134862e+308, 2.9425e-01, 3.3391e-03, - 2DIAGNOSTIC, 9, -7.585317948799e-01, 1.797693134862e+308, 2.9669e-01, 2.4369e-03, - 2DIAGNOSTIC, 10, -7.595443024120e-01, 2.268654878214e-03, 2.9943e-01, 2.7409e-03, - 2DIAGNOSTIC, 11, -7.606731815676e-01, 2.005592038106e-03, 3.0238e-01, 2.9469e-03, - 2DIAGNOSTIC, 12, -7.613596306110e-01, 1.640428875943e-03, 3.0594e-01, 3.5570e-03, - 2DIAGNOSTIC, 13, -7.615680551316e-01, 1.241297139797e-03, 3.0856e-01, 2.6221e-03, - 2DIAGNOSTIC, 14, -7.617881038660e-01, 8.579338197919e-04, 3.1151e-01, 2.9490e-03, - 2DIAGNOSTIC, 15, -7.618770909792e-01, 5.155671133448e-04, 3.1565e-01, 4.1449e-03, - 2DIAGNOSTIC, 16, -7.618343622344e-01, 3.411754668091e-04, 3.1813e-01, 2.4798e-03, - 2DIAGNOSTIC, 17, -7.618605870488e-01, 2.003282785148e-04, 3.2063e-01, 2.5032e-03, - 2DIAGNOSTIC, 18, -7.618388208627e-01, 1.362503696970e-04, 3.2313e-01, 2.5001e-03, - 2DIAGNOSTIC, 19, -7.619147586976e-01, 7.858299053849e-05, 3.2566e-01, 2.5210e-03, - 2DIAGNOSTIC, 20, -7.619452022424e-01, 3.875357634833e-05, 3.2804e-01, 2.3870e-03, - 2DIAGNOSTIC, 21, -7.619921531844e-01, 2.011403516643e-05, 3.3092e-01, 2.8751e-03, - 2DIAGNOSTIC, 22, -7.620297462191e-01, 1.379512435932e-05, 3.3349e-01, 2.5730e-03, - 2DIAGNOSTIC, 23, -7.620671501651e-01, 1.079695319735e-05, 3.3614e-01, 2.6531e-03, - 2DIAGNOSTIC, 24, -7.623333995389e-01, 1.472469594326e-05, 3.3880e-01, 2.6588e-03, - 2DIAGNOSTIC, 25, -7.633117691149e-01, 3.302170980040e-05, 3.4167e-01, 2.8679e-03, - 2DIAGNOSTIC, 26, -7.637524199346e-01, 5.230038418932e-05, 3.4542e-01, 3.7470e-03, - 2DIAGNOSTIC, 27, -7.639437832949e-01, 6.841863354519e-05, 3.4856e-01, 3.1459e-03, - 2DIAGNOSTIC, 28, -7.639632569429e-01, 7.717915176567e-05, 3.5116e-01, 2.5921e-03, - 2DIAGNOSTIC, 29, -7.640543489313e-01, 8.032417768779e-05, 3.5369e-01, 2.5370e-03, - 2DIAGNOSTIC, 30, -7.641359697460e-01, 7.693651240251e-05, 3.5647e-01, 2.7769e-03, - 2DIAGNOSTIC, 31, -7.642773323679e-01, 6.875754055383e-05, 3.5892e-01, 2.4459e-03, - 2DIAGNOSTIC, 32, -7.644245639059e-01, 5.697839338887e-05, 3.6239e-01, 3.4711e-03, - 2DIAGNOSTIC, 33, -7.646238128964e-01, 4.339761259177e-05, 3.6522e-01, 2.8372e-03, - 2DIAGNOSTIC, 34, -7.646864024744e-01, 2.996364404198e-05, 3.6784e-01, 2.6209e-03, - 2DIAGNOSTIC, 35, -7.648499082318e-01, 2.666812112880e-05, 3.7043e-01, 2.5899e-03, - 2DIAGNOSTIC, 36, -7.651436234075e-01, 2.866777813028e-05, 3.7305e-01, 2.6109e-03, - 2DIAGNOSTIC, 37, -7.656649401595e-01, 3.505253502044e-05, 3.7598e-01, 2.9309e-03, - 2DIAGNOSTIC, 38, -7.661423198004e-01, 4.261670817807e-05, 3.7902e-01, 3.0401e-03, - 2DIAGNOSTIC, 39, -7.663575323554e-01, 4.871690087461e-05, 3.8306e-01, 4.0410e-03, - 2DIAGNOSTIC, 40, -7.662527475974e-01, 4.977272563647e-05, 3.8606e-01, 3.0000e-03, - 2DIAGNOSTIC, 41, -7.662908459731e-01, 4.778756051003e-05, 3.8919e-01, 3.1362e-03, - 2DIAGNOSTIC, 42, -7.663047194131e-01, 4.273055970785e-05, 3.9188e-01, 2.6851e-03, - 2DIAGNOSTIC, 43, -7.663005300245e-01, 3.553290153732e-05, 3.9459e-01, 2.7070e-03, - 2DIAGNOSTIC, 44, -7.664280435462e-01, 2.698279691858e-05, 3.9729e-01, 2.7020e-03, - 2DIAGNOSTIC, 45, -7.665550617189e-01, 1.874307226404e-05, 4.0030e-01, 3.0100e-03, - 2DIAGNOSTIC, 46, -7.666926769397e-01, 1.257728972833e-05, 4.0355e-01, 3.2570e-03, - 2DIAGNOSTIC, 47, -7.667505890158e-01, 1.003628734611e-05, 4.0618e-01, 2.6300e-03, - 2DIAGNOSTIC, 48, -7.667140218086e-01, 1.009654584588e-05, 4.1049e-01, 4.3030e-03, - 2DIAGNOSTIC, 49, -7.667147258908e-01, 1.093552958695e-05, 4.1323e-01, 2.7430e-03, - 2DIAGNOSTIC, 50, -7.667171198504e-01, 9.963237463741e-06, 4.1586e-01, 2.6300e-03, - 2DIAGNOSTIC, 51, -7.667200036227e-01, 8.420620288441e-06, 4.1856e-01, 2.7041e-03, - 2DIAGNOSTIC, 52, -7.667232120546e-01, 6.329700696382e-06, 4.2145e-01, 2.8811e-03, - 2DIAGNOSTIC, 53, -7.667265738183e-01, 3.767660257194e-06, 4.2447e-01, 3.0239e-03, - 2DIAGNOSTIC, 54, -7.667354791901e-01, 1.934025222861e-06, 4.2803e-01, 3.5560e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.901650291580e-01, 1.797693134862e+308, 5.0192e-01, 7.3892e-02, - 2DIAGNOSTIC, 2, -5.906259637552e-01, 1.797693134862e+308, 5.1689e-01, 1.4974e-02, - 2DIAGNOSTIC, 3, -5.913072327360e-01, 1.797693134862e+308, 5.3195e-01, 1.5059e-02, - 2DIAGNOSTIC, 4, -5.923645037586e-01, 1.797693134862e+308, 5.4710e-01, 1.5150e-02, - 2DIAGNOSTIC, 5, -5.934169382804e-01, 1.797693134862e+308, 5.6153e-01, 1.4426e-02, - 2DIAGNOSTIC, 6, -5.943756344871e-01, 1.797693134862e+308, 5.7749e-01, 1.5962e-02, - 2DIAGNOSTIC, 7, -5.951243965353e-01, 1.797693134862e+308, 5.9365e-01, 1.6164e-02, - 2DIAGNOSTIC, 8, -5.953812364294e-01, 1.797693134862e+308, 6.1021e-01, 1.6562e-02, - 2DIAGNOSTIC, 9, -5.958365037899e-01, 1.797693134862e+308, 6.3164e-01, 2.1424e-02, - 2DIAGNOSTIC, 10, -5.958878661315e-01, 7.015351958661e-04, 6.4668e-01, 1.5045e-02, - 2DIAGNOSTIC, 11, -5.960689808535e-01, 5.653135395841e-04, 6.6148e-01, 1.4792e-02, - 2DIAGNOSTIC, 12, -5.962319781599e-01, 4.261821578559e-04, 6.7603e-01, 1.4552e-02, - 2DIAGNOSTIC, 13, -5.964095022291e-01, 3.014412802050e-04, 6.9194e-01, 1.5910e-02, - 2DIAGNOSTIC, 14, -5.965835952309e-01, 2.089704776220e-04, 7.0973e-01, 1.7795e-02, - 2DIAGNOSTIC, 15, -5.967622581085e-01, 1.486824797793e-04, 7.2525e-01, 1.5516e-02, - 2DIAGNOSTIC, 16, -5.968478547369e-01, 1.132731933865e-04, 7.4368e-01, 1.8430e-02, - 2DIAGNOSTIC, 17, -5.969934978629e-01, 9.687071233313e-05, 7.6311e-01, 1.9435e-02, - 2DIAGNOSTIC, 18, -5.970569631905e-01, 8.165426772219e-05, 7.7882e-01, 1.5705e-02, - 2DIAGNOSTIC, 19, -5.972519600647e-01, 7.700201110106e-05, 7.9546e-01, 1.6645e-02, - 2DIAGNOSTIC, 20, -5.977187559000e-01, 7.802702196191e-05, 8.1017e-01, 1.4709e-02, - 2DIAGNOSTIC, 21, -5.981435368809e-01, 8.532789714039e-05, 8.2925e-01, 1.9076e-02, - 2DIAGNOSTIC, 22, -5.984774798314e-01, 9.477864565554e-05, 8.4439e-01, 1.5146e-02, - 2DIAGNOSTIC, 23, -5.994384544002e-01, 1.182744096879e-04, 8.6352e-01, 1.9129e-02, - 2DIAGNOSTIC, 24, -5.995523016050e-01, 1.341009045358e-04, 8.7927e-01, 1.5751e-02, - 2DIAGNOSTIC, 25, -5.997501166687e-01, 1.434439192253e-04, 8.9441e-01, 1.5131e-02, - 2DIAGNOSTIC, 26, -5.998258432779e-01, 1.416716688509e-04, 9.1326e-01, 1.8857e-02, - 2DIAGNOSTIC, 27, -5.999746550679e-01, 1.319924102663e-04, 9.2998e-01, 1.6716e-02, - 2DIAGNOSTIC, 28, -6.001931222216e-01, 1.152826898526e-04, 9.4770e-01, 1.7720e-02, - 2DIAGNOSTIC, 29, -6.002870748834e-01, 9.349986237517e-05, 9.6500e-01, 1.7302e-02, - 2DIAGNOSTIC, 30, -6.008623961547e-01, 8.108117636488e-05, 9.8477e-01, 1.9772e-02, - 2DIAGNOSTIC, 31, -6.017809724648e-01, 8.236907101111e-05, 1.0112e+00, 2.6462e-02, - 2DIAGNOSTIC, 32, -6.017859517204e-01, 8.025271362246e-05, 1.0262e+00, 1.4998e-02, - 2DIAGNOSTIC, 33, -6.018038576182e-01, 8.510106608531e-05, 1.0417e+00, 1.5505e-02, - 2DIAGNOSTIC, 34, -6.018250882251e-01, 8.367378876526e-05, 1.0568e+00, 1.5017e-02, - 2DIAGNOSTIC, 35, -6.018639556917e-01, 7.754175981569e-05, 1.0720e+00, 1.5225e-02, - 2DIAGNOSTIC, 36, -6.019070861883e-01, 6.579541577059e-05, 1.0866e+00, 1.4579e-02, - 2DIAGNOSTIC, 37, -6.019592679718e-01, 5.109885110262e-05, 1.1034e+00, 1.6836e-02, - 2DIAGNOSTIC, 38, -6.020150730750e-01, 3.606099875109e-05, 1.1206e+00, 1.7192e-02, - 2DIAGNOSTIC, 39, -6.020511458801e-01, 1.995337566144e-05, 1.1388e+00, 1.8232e-02, - 2DIAGNOSTIC, 40, -6.020619764049e-01, 9.483724942218e-06, 1.1547e+00, 1.5852e-02, - 2DIAGNOSTIC, 41, -6.020665802618e-01, 9.404714907502e-06, 1.1705e+00, 1.5800e-02, - 2DIAGNOSTIC, 42, -6.020714427473e-01, 8.614245264972e-06, 1.1848e+00, 1.4281e-02, - 2DIAGNOSTIC, 43, -6.020788064331e-01, 7.383082011543e-06, 1.2006e+00, 1.5872e-02, - 2DIAGNOSTIC, 44, -6.020840572532e-01, 5.852275091964e-06, 1.2199e+00, 1.9228e-02, - 2DIAGNOSTIC, 45, -6.020714621218e-01, 4.176979405877e-06, 1.2442e+00, 2.4311e-02, - 2DIAGNOSTIC, 46, -6.020714930016e-01, 2.690715331297e-06, 1.2889e+00, 4.4745e-02, - 2DIAGNOSTIC, 47, -6.020714929973e-01, 1.592316796799e-06, 1.3319e+00, 4.2950e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.065024530717e-01, 1.797693134862e+308, 1.5381e+00, 2.0623e-01, - Elapsed time (stage 1): 1.5679e+00 - - -Total elapsed time: 2.9347e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:15:07 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 31 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 62 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 86.67% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 86.67% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[13140 431 9131 468 191 226 0 0 0 0 0 0 - 0 0 0 0 0 195 0 0 0 0 0 0 - 0 0 0 0 0 0 0] -[109502 87715 14536 9033 13901 9712 2944 1612 3744 2064 - 1730 1592 2460 1226 278 1089 823 0 278 224 - 288 381 0 0 199 0 0 0 0 0 - 0] -[ 0 13659 0 3735 8687 1383 3360 0 0 0 210 233 - 183 0 0 0 0 0 751 0 0 0 0 186 - 0 1629 0 0 4584 0 0] -[ 1028 108400 468 813 0 0 0 471 0 358 - 0 5698 2569 952 1337 0 682 1029 4556 3132 - 0 0 0 852 229 91349 242 714 0 1681 - 681] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:24:12 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:24:17 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:09 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:09 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:09 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:20 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:23 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC006 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:28:36 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:29:04 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:31:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:31:13 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:32:32 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:32:32 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55d65a2bcd20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [80.4449, 113.949, -129.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d65a133730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb36630f010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x55d65a2c0020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 54.8152, -116.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d65a2c60c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb362c50010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55d65a2d6840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [80.4449, 113.949, -129.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d65a2c2890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb35d848010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x55d65a2da3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 54.8152, -116.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55d65a2c9130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb35a189010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.482791817376e-01, 1.797693134862e+308, 2.4636e-01, 2.4636e-01, - 2DIAGNOSTIC, 2, -3.499844875395e-01, 1.797693134862e+308, 2.4761e-01, 1.2510e-03, - 2DIAGNOSTIC, 3, -3.515116706634e-01, 1.797693134862e+308, 2.4888e-01, 1.2779e-03, - 2DIAGNOSTIC, 4, -3.530460297562e-01, 1.797693134862e+308, 2.5012e-01, 1.2379e-03, - 2DIAGNOSTIC, 5, -3.561498362105e-01, 1.797693134862e+308, 2.5160e-01, 1.4791e-03, - 2DIAGNOSTIC, 6, -3.606658652761e-01, 1.797693134862e+308, 2.5284e-01, 1.2400e-03, - 2DIAGNOSTIC, 7, -3.644474389343e-01, 1.797693134862e+308, 2.5421e-01, 1.3690e-03, - 2DIAGNOSTIC, 8, -3.918344674647e-01, 1.797693134862e+308, 2.5560e-01, 1.3859e-03, - 2DIAGNOSTIC, 9, -4.193610507367e-01, 1.797693134862e+308, 2.5698e-01, 1.3800e-03, - 2DIAGNOSTIC, 10, -4.687507630725e-01, 1.627162902564e-02, 2.5877e-01, 1.7889e-03, - 2DIAGNOSTIC, 11, -5.506104786291e-01, 2.416992894231e-02, 2.6099e-01, 2.2211e-03, - 2DIAGNOSTIC, 12, -5.530931328153e-01, 2.832930260330e-02, 2.6273e-01, 1.7390e-03, - 2DIAGNOSTIC, 13, -5.595187759831e-01, 2.959705090037e-02, 2.6426e-01, 1.5321e-03, - 2DIAGNOSTIC, 14, -5.818984419989e-01, 2.905182713134e-02, 2.6632e-01, 2.0599e-03, - 2DIAGNOSTIC, 15, -5.902609534041e-01, 2.641267009448e-02, 2.6853e-01, 2.2092e-03, - 2DIAGNOSTIC, 16, -5.920321706154e-01, 2.204832632371e-02, 2.7002e-01, 1.4880e-03, - 2DIAGNOSTIC, 17, -5.952142946916e-01, 1.661734864389e-02, 2.7170e-01, 1.6861e-03, - 2DIAGNOSTIC, 18, -5.952110885472e-01, 1.141055144743e-02, 2.7320e-01, 1.4958e-03, - 2DIAGNOSTIC, 19, -5.956481939246e-01, 6.713390063033e-03, 2.7469e-01, 1.4930e-03, - 2DIAGNOSTIC, 20, -5.964047648735e-01, 3.402197240545e-03, 2.7617e-01, 1.4811e-03, - 2DIAGNOSTIC, 21, -5.990883530983e-01, 2.536027641016e-03, 2.7862e-01, 2.4450e-03, - 2DIAGNOSTIC, 22, -6.013226163184e-01, 1.658881180880e-03, 2.8047e-01, 1.8492e-03, - 2DIAGNOSTIC, 23, -6.014374779653e-01, 8.707298047865e-04, 2.8198e-01, 1.5140e-03, - 2DIAGNOSTIC, 24, -6.017612849741e-01, 6.171182598146e-04, 2.8348e-01, 1.4989e-03, - 2DIAGNOSTIC, 25, -6.032357025741e-01, 5.524373243773e-04, 2.8523e-01, 1.7569e-03, - 2DIAGNOSTIC, 26, -6.038529858850e-01, 4.899016075122e-04, 2.8769e-01, 2.4598e-03, - 2DIAGNOSTIC, 27, -6.040458023424e-01, 4.561987139906e-04, 2.8948e-01, 1.7869e-03, - 2DIAGNOSTIC, 28, -6.051337818670e-01, 4.051752636504e-04, 2.9118e-01, 1.6961e-03, - 2DIAGNOSTIC, 29, -6.050039232102e-01, 3.265065076858e-04, 2.9272e-01, 1.5440e-03, - 2DIAGNOSTIC, 30, -6.048736733771e-01, 2.337387791368e-04, 2.9420e-01, 1.4820e-03, - 2DIAGNOSTIC, 31, -6.031841195189e-01, 1.424967383308e-04, 2.9571e-01, 1.5101e-03, - 2DIAGNOSTIC, 32, -6.033618559073e-01, 8.626329932502e-05, 2.9753e-01, 1.8179e-03, - 2DIAGNOSTIC, 33, -6.035607026438e-01, 3.055863423741e-05, 2.9907e-01, 1.5430e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.419804439881e-01, 1.797693134862e+308, 5.4307e-01, 2.4399e-01, - 2DIAGNOSTIC, 2, -4.431518942210e-01, 1.797693134862e+308, 5.4520e-01, 2.1379e-03, - 2DIAGNOSTIC, 3, -4.444752489127e-01, 1.797693134862e+308, 5.4766e-01, 2.4540e-03, - 2DIAGNOSTIC, 4, -4.452483142212e-01, 1.797693134862e+308, 5.5006e-01, 2.3980e-03, - 2DIAGNOSTIC, 5, -4.454043071831e-01, 1.797693134862e+308, 5.5217e-01, 2.1100e-03, - 2DIAGNOSTIC, 6, -4.454903106280e-01, 1.797693134862e+308, 5.5429e-01, 2.1260e-03, - 2DIAGNOSTIC, 7, -4.455839442465e-01, 1.797693134862e+308, 5.5738e-01, 3.0909e-03, - 2DIAGNOSTIC, 8, -4.456013313561e-01, 1.797693134862e+308, 5.5976e-01, 2.3799e-03, - 2DIAGNOSTIC, 9, -4.456198015745e-01, 1.797693134862e+308, 5.6179e-01, 2.0280e-03, - 2DIAGNOSTIC, 10, -4.455857119383e-01, 4.327276264052e-04, 5.6406e-01, 2.2650e-03, - 2DIAGNOSTIC, 11, -4.456659001265e-01, 2.266217768373e-04, 5.6661e-01, 2.5580e-03, - 2DIAGNOSTIC, 12, -4.457392953164e-01, 9.950259026296e-05, 5.6889e-01, 2.2728e-03, - 2DIAGNOSTIC, 13, -4.457244930100e-01, 4.646712866706e-05, 5.7145e-01, 2.5620e-03, - 2DIAGNOSTIC, 14, -4.456417315566e-01, 2.852953630327e-05, 5.7500e-01, 3.5491e-03, - 2DIAGNOSTIC, 15, -4.456894036988e-01, 1.936720538361e-05, 5.7732e-01, 2.3191e-03, - 2DIAGNOSTIC, 16, -4.456978489931e-01, 1.328884521089e-05, 5.7961e-01, 2.2919e-03, - 2DIAGNOSTIC, 17, -4.457094639037e-01, 1.071373722012e-05, 5.8190e-01, 2.2881e-03, - 2DIAGNOSTIC, 18, -4.457206925885e-01, 8.665819622999e-06, 5.8482e-01, 2.9252e-03, - 2DIAGNOSTIC, 19, -4.457231474489e-01, 7.044482474440e-06, 5.8744e-01, 2.6181e-03, - 2DIAGNOSTIC, 20, -4.456733355165e-01, 2.347477372627e-06, 5.8974e-01, 2.3041e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.502233289434e-01, 1.797693134862e+308, 8.5424e-01, 2.6450e-01, - 2DIAGNOSTIC, 2, -3.510268878583e-01, 1.797693134862e+308, 8.6650e-01, 1.2264e-02, - 2DIAGNOSTIC, 3, -3.520189926943e-01, 1.797693134862e+308, 8.7889e-01, 1.2388e-02, - 2DIAGNOSTIC, 4, -3.530268940700e-01, 1.797693134862e+308, 8.9131e-01, 1.2415e-02, - 2DIAGNOSTIC, 5, -3.532878337669e-01, 1.797693134862e+308, 9.0380e-01, 1.2494e-02, - 2DIAGNOSTIC, 6, -3.534274328955e-01, 1.797693134862e+308, 9.1679e-01, 1.2992e-02, - 2DIAGNOSTIC, 7, -3.540917174084e-01, 1.797693134862e+308, 9.2939e-01, 1.2593e-02, - 2DIAGNOSTIC, 8, -3.590219545355e-01, 1.797693134862e+308, 9.5099e-01, 2.1600e-02, - 2DIAGNOSTIC, 9, -3.592367860480e-01, 1.797693134862e+308, 9.6569e-01, 1.4702e-02, - 2DIAGNOSTIC, 10, -3.592100276466e-01, 1.734826881329e-03, 9.8032e-01, 1.4630e-02, - 2DIAGNOSTIC, 11, -3.590549281002e-01, 1.565087020501e-03, 9.9463e-01, 1.4309e-02, - 2DIAGNOSTIC, 12, -3.590220472989e-01, 1.333088629337e-03, 1.0070e+00, 1.2335e-02, - 2DIAGNOSTIC, 13, -3.589989241139e-01, 1.069858324380e-03, 1.0199e+00, 1.2954e-02, - 2DIAGNOSTIC, 14, -3.589298143208e-01, 8.001741252299e-04, 1.0327e+00, 1.2827e-02, - 2DIAGNOSTIC, 15, -3.595195455948e-01, 5.437340594010e-04, 1.0458e+00, 1.3019e-02, - 2DIAGNOSTIC, 16, -3.609205340702e-01, 3.481729556187e-04, 1.0620e+00, 1.6283e-02, - 2DIAGNOSTIC, 17, -3.608832902936e-01, 1.653848636372e-04, 1.0747e+00, 1.2671e-02, - 2DIAGNOSTIC, 18, -3.617264362207e-01, 2.443392161503e-04, 1.0882e+00, 1.3465e-02, - 2DIAGNOSTIC, 19, -3.653641237347e-01, 4.533500386826e-04, 1.1017e+00, 1.3528e-02, - 2DIAGNOSTIC, 20, -3.691847176864e-01, 7.451968835980e-04, 1.1252e+00, 2.3523e-02, - 2DIAGNOSTIC, 21, -3.694976431357e-01, 9.422298876025e-04, 1.1401e+00, 1.4895e-02, - 2DIAGNOSTIC, 22, -3.698994571163e-01, 1.049867555251e-03, 1.1539e+00, 1.3788e-02, - 2DIAGNOSTIC, 23, -3.699255866216e-01, 1.052032070330e-03, 1.1669e+00, 1.2982e-02, - 2DIAGNOSTIC, 24, -3.705983158132e-01, 9.731170739513e-04, 1.1812e+00, 1.4259e-02, - 2DIAGNOSTIC, 25, -3.726553624023e-01, 8.891089493455e-04, 1.1971e+00, 1.5936e-02, - 2DIAGNOSTIC, 26, -3.752439823374e-01, 8.489573686984e-04, 1.2093e+00, 1.2200e-02, - 2DIAGNOSTIC, 27, -3.790590229348e-01, 8.428623613523e-04, 1.2217e+00, 1.2400e-02, - 2DIAGNOSTIC, 28, -3.874242159437e-01, 1.012263040760e-03, 1.2374e+00, 1.5701e-02, - 2DIAGNOSTIC, 29, -3.877601660404e-01, 1.173791794461e-03, 1.2531e+00, 1.5703e-02, - 2DIAGNOSTIC, 30, -3.879814008575e-01, 1.320986656153e-03, 1.2653e+00, 1.2179e-02, - 2DIAGNOSTIC, 31, -3.888227679786e-01, 1.364009449171e-03, 1.2792e+00, 1.3896e-02, - 2DIAGNOSTIC, 32, -3.898456253605e-01, 1.307805885687e-03, 1.2911e+00, 1.1955e-02, - 2DIAGNOSTIC, 33, -3.922347608186e-01, 1.185109795262e-03, 1.3047e+00, 1.3576e-02, - 2DIAGNOSTIC, 34, -3.928027258083e-01, 9.850760815566e-04, 1.3190e+00, 1.4257e-02, - 2DIAGNOSTIC, 35, -3.952804065761e-01, 8.066354351875e-04, 1.3309e+00, 1.1964e-02, - 2DIAGNOSTIC, 36, -4.067652182997e-01, 8.617272972961e-04, 1.3463e+00, 1.5371e-02, - 2DIAGNOSTIC, 37, -4.126514967808e-01, 1.021222745238e-03, 1.3701e+00, 2.3813e-02, - 2DIAGNOSTIC, 38, -4.127637080120e-01, 1.244560063879e-03, 1.3837e+00, 1.3628e-02, - 2DIAGNOSTIC, 39, -4.128950078600e-01, 1.350984095473e-03, 1.3955e+00, 1.1793e-02, - 2DIAGNOSTIC, 40, -4.129794316657e-01, 1.329559764542e-03, 1.4072e+00, 1.1716e-02, - 2DIAGNOSTIC, 41, -4.131393190649e-01, 1.197346239091e-03, 1.4207e+00, 1.3411e-02, - 2DIAGNOSTIC, 42, -4.132438677109e-01, 9.754166449325e-04, 1.4324e+00, 1.1765e-02, - 2DIAGNOSTIC, 43, -4.131775893600e-01, 7.158207309851e-04, 1.4440e+00, 1.1552e-02, - 2DIAGNOSTIC, 44, -4.132610498416e-01, 4.149503537276e-04, 1.4557e+00, 1.1740e-02, - 2DIAGNOSTIC, 45, -4.149664974426e-01, 1.546890407620e-04, 1.4712e+00, 1.5457e-02, - 2DIAGNOSTIC, 46, -4.159547346717e-01, 9.197712746959e-05, 1.4851e+00, 1.3932e-02, - 2DIAGNOSTIC, 47, -4.158872947628e-01, 1.160100754780e-04, 1.4965e+00, 1.1442e-02, - 2DIAGNOSTIC, 48, -4.160928775482e-01, 1.335265765633e-04, 1.5081e+00, 1.1552e-02, - 2DIAGNOSTIC, 49, -4.165341296963e-01, 1.463170377438e-04, 1.5200e+00, 1.1924e-02, - 2DIAGNOSTIC, 50, -4.200797242954e-01, 1.978893047808e-04, 1.5318e+00, 1.1746e-02, - 2DIAGNOSTIC, 51, -4.217533492930e-01, 2.533264041682e-04, 1.5487e+00, 1.6889e-02, - 2DIAGNOSTIC, 52, -4.219581410034e-01, 2.870537679440e-04, 1.5605e+00, 1.1835e-02, - 2DIAGNOSTIC, 53, -4.234488050972e-01, 3.132242818243e-04, 1.5726e+00, 1.2112e-02, - 2DIAGNOSTIC, 54, -4.304605245955e-01, 4.042486497539e-04, 1.5864e+00, 1.3764e-02, - 2DIAGNOSTIC, 55, -4.355166472533e-01, 5.396567102513e-04, 1.6004e+00, 1.4032e-02, - 2DIAGNOSTIC, 56, -4.423533585386e-01, 7.194981816835e-04, 1.6141e+00, 1.3679e-02, - 2DIAGNOSTIC, 57, -4.685204762656e-01, 1.157542175744e-03, 1.6340e+00, 1.9907e-02, - 2DIAGNOSTIC, 58, -4.926915538574e-01, 1.763860756354e-03, 1.6481e+00, 1.4098e-02, - 2DIAGNOSTIC, 59, -5.415867145980e-01, 2.770002086893e-03, 1.6625e+00, 1.4445e-02, - 2DIAGNOSTIC, 60, -5.598945964557e-01, 3.714437979339e-03, 1.6768e+00, 1.4300e-02, - 2DIAGNOSTIC, 61, -5.748871777656e-01, 4.456787634056e-03, 1.6886e+00, 1.1780e-02, - 2DIAGNOSTIC, 62, -5.782558926895e-01, 4.780969006600e-03, 1.7005e+00, 1.1897e-02, - 2DIAGNOSTIC, 63, -5.790213959713e-01, 4.654750369366e-03, 1.7150e+00, 1.4471e-02, - 2DIAGNOSTIC, 64, -5.810564765014e-01, 4.183516710801e-03, 1.7352e+00, 2.0269e-02, - 2DIAGNOSTIC, 65, -5.823921793567e-01, 3.400363214272e-03, 1.7503e+00, 1.5064e-02, - 2DIAGNOSTIC, 66, -5.832569750971e-01, 2.405691969290e-03, 1.7628e+00, 1.2508e-02, - 2DIAGNOSTIC, 67, -5.837297942203e-01, 1.495853294292e-03, 1.7801e+00, 1.7240e-02, - 2DIAGNOSTIC, 68, -5.839507017069e-01, 7.149151312105e-04, 1.7938e+00, 1.3776e-02, - 2DIAGNOSTIC, 69, -5.840115395500e-01, 3.742297136675e-04, 1.8062e+00, 1.2328e-02, - 2DIAGNOSTIC, 70, -5.843073265197e-01, 1.862515522395e-04, 1.8189e+00, 1.2702e-02, - 2DIAGNOSTIC, 71, -5.845824215541e-01, 1.309987097376e-04, 1.8332e+00, 1.4317e-02, - 2DIAGNOSTIC, 72, -5.852922969027e-01, 1.031525751961e-04, 1.8496e+00, 1.6405e-02, - 2DIAGNOSTIC, 73, -5.856322060157e-01, 7.612097407918e-05, 1.8631e+00, 1.3505e-02, - 2DIAGNOSTIC, 74, -5.859581147720e-01, 6.369315953527e-05, 1.8772e+00, 1.4161e-02, - 2DIAGNOSTIC, 75, -5.860151475665e-01, 5.770477610757e-05, 1.8896e+00, 1.2346e-02, - 2DIAGNOSTIC, 76, -5.861273044312e-01, 5.474658905259e-05, 1.9075e+00, 1.7863e-02, - 2DIAGNOSTIC, 77, -5.860949488553e-01, 5.030041423201e-05, 1.9239e+00, 1.6413e-02, - 2DIAGNOSTIC, 78, -5.861068170325e-01, 4.315519795484e-05, 1.9390e+00, 1.5174e-02, - 2DIAGNOSTIC, 79, -5.861222889155e-01, 3.277974691798e-05, 1.9513e+00, 1.2266e-02, - 2DIAGNOSTIC, 80, -5.861116398395e-01, 2.195698880402e-05, 1.9648e+00, 1.3523e-02, - 2DIAGNOSTIC, 81, -5.861619156438e-01, 1.189697022730e-05, 1.9773e+00, 1.2482e-02, - 2DIAGNOSTIC, 82, -5.862102994685e-01, 6.907722310007e-06, 1.9895e+00, 1.2222e-02, - 2DIAGNOSTIC, 83, -5.862301769725e-01, 4.150559040031e-06, 2.0020e+00, 1.2487e-02, - 2DIAGNOSTIC, 84, -5.862363843129e-01, 3.626006539196e-06, 2.0157e+00, 1.3697e-02, - 2DIAGNOSTIC, 85, -5.862512366407e-01, 3.329186692450e-06, 2.0292e+00, 1.3487e-02, - 2DIAGNOSTIC, 86, -5.863087370835e-01, 4.008364843162e-06, 2.0606e+00, 3.1387e-02, - 2DIAGNOSTIC, 87, -5.863216540903e-01, 4.167530223812e-06, 2.0759e+00, 1.5281e-02, - 2DIAGNOSTIC, 88, -5.863217255772e-01, 4.052404764169e-06, 2.0883e+00, 1.2397e-02, - 2DIAGNOSTIC, 89, -5.863087309091e-01, 3.629928767656e-06, 2.1005e+00, 1.2190e-02, - 2DIAGNOSTIC, 90, -5.863089316647e-01, 2.838647220735e-06, 2.1130e+00, 1.2522e-02, - 2DIAGNOSTIC, 91, -5.863092571683e-01, 2.167427301972e-06, 2.1253e+00, 1.2324e-02, - 2DIAGNOSTIC, 92, -5.863097450755e-01, 1.669838756400e-06, 2.1394e+00, 1.4139e-02, - 2DIAGNOSTIC, 93, -5.862972311225e-01, 1.121886613159e-06, 2.1517e+00, 1.2275e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.935905069144e-01, 1.797693134862e+308, 2.6009e+00, 4.4914e-01, - 2DIAGNOSTIC, 2, -4.937374287280e-01, 1.797693134862e+308, 2.7095e+00, 1.0864e-01, - 2DIAGNOSTIC, 3, -4.939023654808e-01, 1.797693134862e+308, 2.8179e+00, 1.0835e-01, - 2DIAGNOSTIC, 4, -4.939190076791e-01, 1.797693134862e+308, 2.9265e+00, 1.0864e-01, - 2DIAGNOSTIC, 5, -4.939255457802e-01, 1.797693134862e+308, 3.0352e+00, 1.0866e-01, - 2DIAGNOSTIC, 6, -4.939279759714e-01, 1.797693134862e+308, 3.1324e+00, 9.7282e-02, - 2DIAGNOSTIC, 7, -4.939364394744e-01, 1.797693134862e+308, 3.2406e+00, 1.0812e-01, - 2DIAGNOSTIC, 8, -4.939311910963e-01, 1.797693134862e+308, 3.3335e+00, 9.2916e-02, - 2DIAGNOSTIC, 9, -4.939363773774e-01, 1.797693134862e+308, 3.4278e+00, 9.4341e-02, - 2DIAGNOSTIC, 10, -4.939456236526e-01, 3.527416848276e-05, 3.5245e+00, 9.6715e-02, - 2DIAGNOSTIC, 11, -4.939804823209e-01, 1.843319760338e-05, 3.6220e+00, 9.7470e-02, - 2DIAGNOSTIC, 12, -4.940902841087e-01, 1.505971669222e-05, 3.7373e+00, 1.1525e-01, - 2DIAGNOSTIC, 13, -4.941750438985e-01, 2.200905115422e-05, 3.9167e+00, 1.7943e-01, - 2DIAGNOSTIC, 14, -4.942134342623e-01, 2.842311920820e-05, 4.0210e+00, 1.0431e-01, - 2DIAGNOSTIC, 15, -4.942015619020e-01, 3.144162158278e-05, 4.1408e+00, 1.1976e-01, - 2DIAGNOSTIC, 16, -4.942029706122e-01, 3.156534116587e-05, 4.2572e+00, 1.1640e-01, - 2DIAGNOSTIC, 17, -4.942026836850e-01, 2.917783465745e-05, 4.4059e+00, 1.4872e-01, - 2DIAGNOSTIC, 18, -4.942028287604e-01, 2.431821095673e-05, 4.5121e+00, 1.0619e-01, - 2DIAGNOSTIC, 19, -4.942016839147e-01, 1.803457055964e-05, 4.6140e+00, 1.0193e-01, - 2DIAGNOSTIC, 20, -4.942005349464e-01, 1.114366253097e-05, 4.7017e+00, 8.7655e-02, - 2DIAGNOSTIC, 21, -4.941994806468e-01, 4.905516160725e-06, 4.8036e+00, 1.0193e-01, - 2DIAGNOSTIC, 22, -4.941970497392e-01, 1.669168812078e-06, 4.8961e+00, 9.2529e-02, - Elapsed time (stage 0): 5.0605e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.126376980150e-01, 1.797693134862e+308, 2.2830e-01, 2.2830e-01, - 2DIAGNOSTIC, 2, -8.135400887758e-01, 1.797693134862e+308, 2.2977e-01, 1.4641e-03, - 2DIAGNOSTIC, 3, -8.129766383476e-01, 1.797693134862e+308, 2.3122e-01, 1.4539e-03, - 2DIAGNOSTIC, 4, -8.138029127693e-01, 1.797693134862e+308, 2.3243e-01, 1.2081e-03, - 2DIAGNOSTIC, 5, -8.140408526709e-01, 1.797693134862e+308, 2.3369e-01, 1.2591e-03, - 2DIAGNOSTIC, 6, -8.163646336264e-01, 1.797693134862e+308, 2.3508e-01, 1.3919e-03, - 2DIAGNOSTIC, 7, -8.190230573875e-01, 1.797693134862e+308, 2.3632e-01, 1.2441e-03, - 2DIAGNOSTIC, 8, -8.232504700234e-01, 1.797693134862e+308, 2.3792e-01, 1.5922e-03, - 2DIAGNOSTIC, 9, -8.282329335578e-01, 1.797693134862e+308, 2.3915e-01, 1.2372e-03, - 2DIAGNOSTIC, 10, -8.340862635646e-01, 1.541504835441e-03, 2.4074e-01, 1.5891e-03, - 2DIAGNOSTIC, 11, -8.474062149419e-01, 2.115961079373e-03, 2.4282e-01, 2.0781e-03, - 2DIAGNOSTIC, 12, -8.653648850309e-01, 2.932272281038e-03, 2.4450e-01, 1.6770e-03, - 2DIAGNOSTIC, 13, -8.858098154485e-01, 3.862326506959e-03, 2.4671e-01, 2.2101e-03, - 2DIAGNOSTIC, 14, -8.883078208651e-01, 4.377247282548e-03, 2.4873e-01, 2.0239e-03, - 2DIAGNOSTIC, 15, -8.908528690993e-01, 4.491287453118e-03, 2.5030e-01, 1.5700e-03, - 2DIAGNOSTIC, 16, -9.002398102781e-01, 4.425122882325e-03, 2.5207e-01, 1.7700e-03, - 2DIAGNOSTIC, 17, -9.108814296169e-01, 4.209988031260e-03, 2.5391e-01, 1.8370e-03, - 2DIAGNOSTIC, 18, -9.139688079707e-01, 3.760704075393e-03, 2.5556e-01, 1.6530e-03, - 2DIAGNOSTIC, 19, -9.210028490278e-01, 3.230651594871e-03, 2.5758e-01, 2.0192e-03, - 2DIAGNOSTIC, 20, -9.237278002179e-01, 2.602109646207e-03, 2.5909e-01, 1.5070e-03, - 2DIAGNOSTIC, 21, -9.314985592328e-01, 2.121560202680e-03, 2.6063e-01, 1.5390e-03, - 2DIAGNOSTIC, 22, -9.392067035851e-01, 1.861938884564e-03, 2.6218e-01, 1.5519e-03, - 2DIAGNOSTIC, 23, -9.441054641003e-01, 1.812781591534e-03, 2.6448e-01, 2.3060e-03, - 2DIAGNOSTIC, 24, -9.449008852831e-01, 1.645712029394e-03, 2.6635e-01, 1.8620e-03, - 2DIAGNOSTIC, 25, -9.470243203892e-01, 1.399441577395e-03, 2.6812e-01, 1.7769e-03, - 2DIAGNOSTIC, 26, -9.486095979045e-01, 1.175646625995e-03, 2.6968e-01, 1.5559e-03, - 2DIAGNOSTIC, 27, -9.489341681490e-01, 9.890133458505e-04, 2.7122e-01, 1.5409e-03, - 2DIAGNOSTIC, 28, -9.498805704818e-01, 7.689371533481e-04, 2.7286e-01, 1.6432e-03, - 2DIAGNOSTIC, 29, -9.512382431994e-01, 5.869986306559e-04, 2.7476e-01, 1.8940e-03, - 2DIAGNOSTIC, 30, -9.510145510288e-01, 3.883106491674e-04, 2.7654e-01, 1.7881e-03, - 2DIAGNOSTIC, 31, -9.506257172314e-01, 2.414411093243e-04, 2.7829e-01, 1.7490e-03, - 2DIAGNOSTIC, 32, -9.518168531515e-01, 1.696015459273e-04, 2.8001e-01, 1.7121e-03, - 2DIAGNOSTIC, 33, -9.548142230104e-01, 1.623001425586e-04, 2.8176e-01, 1.7550e-03, - 2DIAGNOSTIC, 34, -9.551040334680e-01, 1.490140442378e-04, 2.8409e-01, 2.3332e-03, - 2DIAGNOSTIC, 35, -9.554120625622e-01, 1.447273225294e-04, 2.8566e-01, 1.5619e-03, - 2DIAGNOSTIC, 36, -9.556012814163e-01, 1.432754859221e-04, 2.8729e-01, 1.6320e-03, - 2DIAGNOSTIC, 37, -9.552302045741e-01, 1.276357121738e-04, 2.8878e-01, 1.4901e-03, - 2DIAGNOSTIC, 38, -9.554712227302e-01, 1.099633009180e-04, 2.9021e-01, 1.4341e-03, - 2DIAGNOSTIC, 39, -9.557774883461e-01, 9.627647786998e-05, 2.9165e-01, 1.4400e-03, - 2DIAGNOSTIC, 40, -9.563630598156e-01, 7.750881656567e-05, 2.9308e-01, 1.4300e-03, - 2DIAGNOSTIC, 41, -9.567133107576e-01, 5.206560917993e-05, 2.9467e-01, 1.5841e-03, - 2DIAGNOSTIC, 42, -9.575588711814e-01, 3.769772680861e-05, 2.9705e-01, 2.3830e-03, - 2DIAGNOSTIC, 43, -9.576745562402e-01, 4.308013037491e-05, 2.9841e-01, 1.3618e-03, - 2DIAGNOSTIC, 44, -9.577339737407e-01, 4.659045048077e-05, 2.9977e-01, 1.3580e-03, - 2DIAGNOSTIC, 45, -9.572827911856e-01, 4.453153356745e-05, 3.0130e-01, 1.5321e-03, - 2DIAGNOSTIC, 46, -9.589320253582e-01, 5.100906440709e-05, 3.0301e-01, 1.7121e-03, - 2DIAGNOSTIC, 47, -9.589097468979e-01, 4.937232293392e-05, 3.0491e-01, 1.8930e-03, - 2DIAGNOSTIC, 48, -9.576787811141e-01, 3.680618617561e-05, 3.0622e-01, 1.3151e-03, - 2DIAGNOSTIC, 49, -9.586958643375e-01, 3.012532626599e-05, 3.0768e-01, 1.4548e-03, - 2DIAGNOSTIC, 50, -9.599940257653e-01, 3.235881918463e-05, 3.0937e-01, 1.6890e-03, - 2DIAGNOSTIC, 51, -9.607139019616e-01, 3.741371210687e-05, 3.1150e-01, 2.1381e-03, - 2DIAGNOSTIC, 52, -9.612697398727e-01, 4.710406521929e-05, 3.1302e-01, 1.5140e-03, - 2DIAGNOSTIC, 53, -9.613878453354e-01, 5.361965867887e-05, 3.1442e-01, 1.4060e-03, - 2DIAGNOSTIC, 54, -9.615001129173e-01, 5.595664796757e-05, 3.1604e-01, 1.6131e-03, - 2DIAGNOSTIC, 55, -9.629796672834e-01, 5.817769654803e-05, 3.1756e-01, 1.5280e-03, - 2DIAGNOSTIC, 56, -9.631028220471e-01, 6.426464930257e-05, 3.1896e-01, 1.3912e-03, - 2DIAGNOSTIC, 57, -9.631392589283e-01, 6.448317934847e-05, 3.2061e-01, 1.6541e-03, - 2DIAGNOSTIC, 58, -9.631599996937e-01, 5.221424233475e-05, 3.2225e-01, 1.6398e-03, - 2DIAGNOSTIC, 59, -9.631855072429e-01, 4.073359736251e-05, 3.2454e-01, 2.2871e-03, - 2DIAGNOSTIC, 60, -9.632028040983e-01, 3.235333041697e-05, 3.2610e-01, 1.5650e-03, - 2DIAGNOSTIC, 61, -9.632459760176e-01, 2.495148006931e-05, 3.2761e-01, 1.5039e-03, - 2DIAGNOSTIC, 62, -9.632575298347e-01, 1.836805834890e-05, 3.2912e-01, 1.5180e-03, - 2DIAGNOSTIC, 63, -9.632670848293e-01, 1.099062226367e-05, 3.3209e-01, 2.9671e-03, - 2DIAGNOSTIC, 64, -9.632671017497e-01, 3.191686922008e-06, 3.3752e-01, 5.4300e-03, - 2DIAGNOSTIC, 65, -9.632671017477e-01, 2.360807371090e-06, 3.4322e-01, 5.6970e-03, - 2DIAGNOSTIC, 66, -9.632671017477e-01, 1.945592838840e-06, 3.4501e-01, 1.7970e-03, - 2DIAGNOSTIC, 67, -9.632671017477e-01, 1.569156668348e-06, 3.4679e-01, 1.7800e-03, - 2DIAGNOSTIC, 68, -9.632671017477e-01, 1.194006806888e-06, 3.4909e-01, 2.2981e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.304952887950e-01, 1.797693134862e+308, 5.7165e-01, 2.2255e-01, - 2DIAGNOSTIC, 2, -8.317920181167e-01, 1.797693134862e+308, 5.7402e-01, 2.3749e-03, - 2DIAGNOSTIC, 3, -8.344498727020e-01, 1.797693134862e+308, 5.7647e-01, 2.4519e-03, - 2DIAGNOSTIC, 4, -8.383267982068e-01, 1.797693134862e+308, 5.7881e-01, 2.3391e-03, - 2DIAGNOSTIC, 5, -8.406737096623e-01, 1.797693134862e+308, 5.8193e-01, 3.1240e-03, - 2DIAGNOSTIC, 6, -8.412203112126e-01, 1.797693134862e+308, 5.8434e-01, 2.4071e-03, - 2DIAGNOSTIC, 7, -8.418726102679e-01, 1.797693134862e+308, 5.8704e-01, 2.7001e-03, - 2DIAGNOSTIC, 8, -8.415872322694e-01, 1.797693134862e+308, 5.8977e-01, 2.7308e-03, - 2DIAGNOSTIC, 9, -8.415687308736e-01, 1.797693134862e+308, 5.9248e-01, 2.7051e-03, - 2DIAGNOSTIC, 10, -8.415227025230e-01, 8.956432448919e-04, 5.9515e-01, 2.6720e-03, - 2DIAGNOSTIC, 11, -8.414947324456e-01, 5.787732281661e-04, 5.9813e-01, 2.9850e-03, - 2DIAGNOSTIC, 12, -8.413152425193e-01, 2.947170349731e-04, 6.0115e-01, 3.0141e-03, - 2DIAGNOSTIC, 13, -8.413360572272e-01, 9.615221153354e-05, 6.0414e-01, 2.9941e-03, - 2DIAGNOSTIC, 14, -8.413789223724e-01, 1.108570129647e-05, 6.0683e-01, 2.6860e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.908857595794e-01, 1.797693134862e+308, 8.8276e-01, 2.7593e-01, - 2DIAGNOSTIC, 2, -6.930397124718e-01, 1.797693134862e+308, 8.9711e-01, 1.4344e-02, - 2DIAGNOSTIC, 3, -6.963410409603e-01, 1.797693134862e+308, 9.1120e-01, 1.4093e-02, - 2DIAGNOSTIC, 4, -6.993718394346e-01, 1.797693134862e+308, 9.2503e-01, 1.3827e-02, - 2DIAGNOSTIC, 5, -7.020199357644e-01, 1.797693134862e+308, 9.3897e-01, 1.3940e-02, - 2DIAGNOSTIC, 6, -7.035886984652e-01, 1.797693134862e+308, 9.5287e-01, 1.3901e-02, - 2DIAGNOSTIC, 7, -7.049311826831e-01, 1.797693134862e+308, 9.6849e-01, 1.5621e-02, - 2DIAGNOSTIC, 8, -7.063915115420e-01, 1.797693134862e+308, 9.9094e-01, 2.2451e-02, - 2DIAGNOSTIC, 9, -7.065176366507e-01, 1.797693134862e+308, 1.0060e+00, 1.5081e-02, - 2DIAGNOSTIC, 10, -7.068155072162e-01, 1.528264792832e-03, 1.0196e+00, 1.3606e-02, - 2DIAGNOSTIC, 11, -7.070271888550e-01, 1.123169634278e-03, 1.0331e+00, 1.3460e-02, - 2DIAGNOSTIC, 12, -7.072005075702e-01, 7.625288036916e-04, 1.0465e+00, 1.3423e-02, - 2DIAGNOSTIC, 13, -7.074192750532e-01, 4.969526117087e-04, 1.0660e+00, 1.9441e-02, - 2DIAGNOSTIC, 14, -7.074682394003e-01, 3.123481381844e-04, 1.0822e+00, 1.6243e-02, - 2DIAGNOSTIC, 15, -7.075208955253e-01, 1.968015152380e-04, 1.0979e+00, 1.5742e-02, - 2DIAGNOSTIC, 16, -7.075294427728e-01, 1.172285281855e-04, 1.1124e+00, 1.4462e-02, - 2DIAGNOSTIC, 17, -7.075869516127e-01, 6.880508538716e-05, 1.1287e+00, 1.6261e-02, - 2DIAGNOSTIC, 18, -7.076163658194e-01, 5.298953633798e-05, 1.1463e+00, 1.7632e-02, - 2DIAGNOSTIC, 19, -7.076812402101e-01, 3.805395993867e-05, 1.1601e+00, 1.3820e-02, - 2DIAGNOSTIC, 20, -7.077276874495e-01, 2.814613504255e-05, 1.1769e+00, 1.6776e-02, - 2DIAGNOSTIC, 21, -7.076914213906e-01, 2.004269715077e-05, 1.1913e+00, 1.4428e-02, - 2DIAGNOSTIC, 22, -7.077207532354e-01, 1.460586390788e-05, 1.2060e+00, 1.4715e-02, - 2DIAGNOSTIC, 23, -7.078528621629e-01, 1.452902719064e-05, 1.2202e+00, 1.4209e-02, - 2DIAGNOSTIC, 24, -7.080952862101e-01, 1.802390952277e-05, 1.2362e+00, 1.5979e-02, - 2DIAGNOSTIC, 25, -7.081859949341e-01, 2.190469385520e-05, 1.2525e+00, 1.6308e-02, - 2DIAGNOSTIC, 26, -7.081404429355e-01, 2.301219611492e-05, 1.2769e+00, 2.4396e-02, - 2DIAGNOSTIC, 27, -7.081912820018e-01, 2.369532051421e-05, 1.2911e+00, 1.4209e-02, - 2DIAGNOSTIC, 28, -7.082728022732e-01, 2.372115360182e-05, 1.3077e+00, 1.6615e-02, - 2DIAGNOSTIC, 29, -7.082297970547e-01, 2.179627986863e-05, 1.3215e+00, 1.3733e-02, - 2DIAGNOSTIC, 30, -7.082846589535e-01, 1.946198279650e-05, 1.3361e+00, 1.4662e-02, - 2DIAGNOSTIC, 31, -7.082741338383e-01, 1.498396661387e-05, 1.3500e+00, 1.3848e-02, - 2DIAGNOSTIC, 32, -7.083141909171e-01, 1.033653303473e-05, 1.3658e+00, 1.5825e-02, - 2DIAGNOSTIC, 33, -7.083369655671e-01, 6.873796250070e-06, 1.3802e+00, 1.4341e-02, - 2DIAGNOSTIC, 34, -7.083673401220e-01, 6.256445579056e-06, 1.3957e+00, 1.5554e-02, - 2DIAGNOSTIC, 35, -7.083587888180e-01, 6.144076081873e-06, 1.4108e+00, 1.5105e-02, - 2DIAGNOSTIC, 36, -7.083653579925e-01, 5.100330429324e-06, 1.4255e+00, 1.4653e-02, - 2DIAGNOSTIC, 37, -7.083529236803e-01, 4.103051718524e-06, 1.4383e+00, 1.2867e-02, - 2DIAGNOSTIC, 38, -7.083634864388e-01, 3.839685398639e-06, 1.4511e+00, 1.2798e-02, - 2DIAGNOSTIC, 39, -7.083879192988e-01, 3.092101830533e-06, 1.4659e+00, 1.4722e-02, - 2DIAGNOSTIC, 40, -7.083940966662e-01, 2.783174441596e-06, 1.4788e+00, 1.2934e-02, - 2DIAGNOSTIC, 41, -7.083810248395e-01, 2.067122327677e-06, 1.4973e+00, 1.8471e-02, - 2DIAGNOSTIC, 42, -7.084175277487e-01, 2.001076287658e-06, 1.5106e+00, 1.3363e-02, - 2DIAGNOSTIC, 43, -7.083873933216e-01, 1.730153929579e-06, 1.5254e+00, 1.4757e-02, - 2DIAGNOSTIC, 44, -7.084617422747e-01, 2.341368069404e-06, 1.5419e+00, 1.6493e-02, - 2DIAGNOSTIC, 45, -7.084460534235e-01, 2.534329516864e-06, 1.5888e+00, 4.6886e-02, - 2DIAGNOSTIC, 46, -7.084460534206e-01, 2.617357855346e-06, 1.6324e+00, 4.3689e-02, - 2DIAGNOSTIC, 47, -7.084460534206e-01, 2.411917048424e-06, 1.6493e+00, 1.6867e-02, - 2DIAGNOSTIC, 48, -7.084460534206e-01, 2.129153885418e-06, 1.6650e+00, 1.5644e-02, - 2DIAGNOSTIC, 49, -7.084460534206e-01, 1.911438228940e-06, 1.6818e+00, 1.6823e-02, - 2DIAGNOSTIC, 50, -7.084460534206e-01, 1.633791672055e-06, 1.6994e+00, 1.7576e-02, - 2DIAGNOSTIC, 51, -7.084460534206e-01, 1.167379961187e-06, 1.7149e+00, 1.5544e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.859729655929e-01, 1.797693134862e+308, 2.1822e+00, 4.6725e-01, - 2DIAGNOSTIC, 2, -5.868466959198e-01, 1.797693134862e+308, 2.2903e+00, 1.0812e-01, - 2DIAGNOSTIC, 3, -5.878944523977e-01, 1.797693134862e+308, 2.3992e+00, 1.0898e-01, - 2DIAGNOSTIC, 4, -5.886715650529e-01, 1.797693134862e+308, 2.4996e+00, 1.0034e-01, - 2DIAGNOSTIC, 5, -5.891590905247e-01, 1.797693134862e+308, 2.6051e+00, 1.0552e-01, - 2DIAGNOSTIC, 6, -5.896311079363e-01, 1.797693134862e+308, 2.7269e+00, 1.2179e-01, - 2DIAGNOSTIC, 7, -5.898491678032e-01, 1.797693134862e+308, 2.8521e+00, 1.2518e-01, - 2DIAGNOSTIC, 8, -5.899478622030e-01, 1.797693134862e+308, 3.0277e+00, 1.7563e-01, - 2DIAGNOSTIC, 9, -5.900701736709e-01, 1.797693134862e+308, 3.1387e+00, 1.1100e-01, - 2DIAGNOSTIC, 10, -5.906422070889e-01, 4.643291998900e-04, 3.2474e+00, 1.0874e-01, - 2DIAGNOSTIC, 11, -5.909648404207e-01, 3.496122200071e-04, 3.3564e+00, 1.0892e-01, - 2DIAGNOSTIC, 12, -5.910477698554e-01, 2.606833314847e-04, 3.4947e+00, 1.3831e-01, - 2DIAGNOSTIC, 13, -5.910479432014e-01, 2.010253944829e-04, 3.6145e+00, 1.1981e-01, - 2DIAGNOSTIC, 14, -5.910527043711e-01, 1.587007035549e-04, 3.7334e+00, 1.1895e-01, - 2DIAGNOSTIC, 15, -5.910520048950e-01, 1.227766987889e-04, 3.8575e+00, 1.2412e-01, - 2DIAGNOSTIC, 16, -5.910463792998e-01, 9.401263878862e-05, 3.9806e+00, 1.2309e-01, - 2DIAGNOSTIC, 17, -5.910489544419e-01, 6.658258990586e-05, 4.1169e+00, 1.3625e-01, - 2DIAGNOSTIC, 18, -5.910481401599e-01, 3.906841323711e-05, 4.2681e+00, 1.5125e-01, - 2DIAGNOSTIC, 19, -5.910494263307e-01, 1.384838340867e-05, 4.3856e+00, 1.1751e-01, - 2DIAGNOSTIC, 20, -5.910458226056e-01, 3.517739789918e-06, 4.4940e+00, 1.0837e-01, - 2DIAGNOSTIC, 21, -5.910440658256e-01, 1.305566922495e-06, 4.6118e+00, 1.1777e-01, - 2DIAGNOSTIC, 22, -5.910433910398e-01, 1.116592509731e-06, 4.7131e+00, 1.0134e-01, - 2DIAGNOSTIC, 23, -5.910449808684e-01, 1.005790449427e-06, 4.8141e+00, 1.0093e-01, - 2DIAGNOSTIC, 24, -5.910476446447e-01, 1.086930144445e-06, 4.9312e+00, 1.1717e-01, - 2DIAGNOSTIC, 25, -5.910497758105e-01, 1.215075088726e-06, 5.0336e+00, 1.0233e-01, - 2DIAGNOSTIC, 26, -5.910576256468e-01, 1.379735991971e-06, 5.1813e+00, 1.4772e-01, - 2DIAGNOSTIC, 27, -5.910577369500e-01, 1.562625922345e-06, 5.3072e+00, 1.2595e-01, - 2DIAGNOSTIC, 28, -5.910572192064e-01, 1.673123943023e-06, 5.4684e+00, 1.6121e-01, - 2DIAGNOSTIC, 29, -5.910559106740e-01, 1.727641718206e-06, 5.5968e+00, 1.2837e-01, - 2DIAGNOSTIC, 30, -5.910531147441e-01, 1.616726211927e-06, 5.7044e+00, 1.0755e-01, - 2DIAGNOSTIC, 31, -5.910522488910e-01, 1.419656989063e-06, 5.8083e+00, 1.0397e-01, - 2DIAGNOSTIC, 32, -5.910502795758e-01, 1.157392215817e-06, 5.9120e+00, 1.0372e-01, - Elapsed time (stage 1): 6.0488e+00 - - -Total elapsed time: 1.1114e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:32:47 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:32:47 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55f3308e44f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 54.8152, -116.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f3308e9fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb856e68010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55f3308e5850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 54.8152, -116.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f3308e2f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb8537a9010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55f3308fcb80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 54.8152, -116.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f3308e9550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb8500ea010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55f330901d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 54.8152, -116.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f3308ffc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb84ca2b010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55f330903f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 54.8152, -116.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f3309023a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb84936c010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55f330904540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 54.8152, -116.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f3309044d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb845cad010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.359308599921e-01, 1.797693134862e+308, 2.1460e-01, 2.1460e-01, - 2DIAGNOSTIC, 2, -6.396335323841e-01, 1.797693134862e+308, 2.1679e-01, 2.1832e-03, - 2DIAGNOSTIC, 3, -6.444876380553e-01, 1.797693134862e+308, 2.1889e-01, 2.1050e-03, - 2DIAGNOSTIC, 4, -6.524733813062e-01, 1.797693134862e+308, 2.2093e-01, 2.0411e-03, - 2DIAGNOSTIC, 5, -6.653539181241e-01, 1.797693134862e+308, 2.2308e-01, 2.1479e-03, - 2DIAGNOSTIC, 6, -6.772825263014e-01, 1.797693134862e+308, 2.2533e-01, 2.2550e-03, - 2DIAGNOSTIC, 7, -6.807352188229e-01, 1.797693134862e+308, 2.2789e-01, 2.5570e-03, - 2DIAGNOSTIC, 8, -6.826403896009e-01, 1.797693134862e+308, 2.3026e-01, 2.3692e-03, - 2DIAGNOSTIC, 9, -6.825718624524e-01, 1.797693134862e+308, 2.3257e-01, 2.3062e-03, - 2DIAGNOSTIC, 10, -6.826681181858e-01, 5.401878928649e-03, 2.3511e-01, 2.5482e-03, - 2DIAGNOSTIC, 11, -6.826214836576e-01, 4.119436321978e-03, 2.3763e-01, 2.5129e-03, - 2DIAGNOSTIC, 12, -6.825631183444e-01, 2.818679775044e-03, 2.4041e-01, 2.7800e-03, - 2DIAGNOSTIC, 13, -6.827740927944e-01, 1.636571139974e-03, 2.4262e-01, 2.2120e-03, - 2DIAGNOSTIC, 14, -6.830900621270e-01, 7.245690037811e-04, 2.4487e-01, 2.2500e-03, - 2DIAGNOSTIC, 15, -6.833741371856e-01, 2.347299495716e-04, 2.4739e-01, 2.5179e-03, - 2DIAGNOSTIC, 16, -6.834150327275e-01, 1.005677307044e-04, 2.4994e-01, 2.5480e-03, - 2DIAGNOSTIC, 17, -6.840948091512e-01, 7.504048024601e-05, 2.5246e-01, 2.5249e-03, - 2DIAGNOSTIC, 18, -6.844458969805e-01, 9.821072853134e-05, 2.5497e-01, 2.5070e-03, - 2DIAGNOSTIC, 19, -6.853251322502e-01, 1.276935484072e-04, 2.5720e-01, 2.2361e-03, - 2DIAGNOSTIC, 20, -6.879946282506e-01, 2.004977227444e-04, 2.5978e-01, 2.5811e-03, - 2DIAGNOSTIC, 21, -6.886164493170e-01, 2.581449856025e-04, 2.6228e-01, 2.5001e-03, - 2DIAGNOSTIC, 22, -6.887407791817e-01, 2.881193609323e-04, 2.6505e-01, 2.7690e-03, - 2DIAGNOSTIC, 23, -6.888534560580e-01, 2.951161119224e-04, 2.6726e-01, 2.2101e-03, - 2DIAGNOSTIC, 24, -6.891443676102e-01, 2.843739443004e-04, 2.7063e-01, 3.3691e-03, - 2DIAGNOSTIC, 25, -6.890949940370e-01, 2.511711374855e-04, 2.7315e-01, 2.5170e-03, - 2DIAGNOSTIC, 26, -6.891334451813e-01, 1.981151187220e-04, 2.7534e-01, 2.1920e-03, - 2DIAGNOSTIC, 27, -6.887671252294e-01, 1.360472560738e-04, 2.7756e-01, 2.2211e-03, - 2DIAGNOSTIC, 28, -6.888321085272e-01, 7.234976279640e-05, 2.7981e-01, 2.2500e-03, - 2DIAGNOSTIC, 29, -6.890728203739e-01, 2.143700399666e-05, 2.8243e-01, 2.6181e-03, - 2DIAGNOSTIC, 30, -6.892313400407e-01, 1.112328805108e-05, 2.8509e-01, 2.6588e-03, - 2DIAGNOSTIC, 31, -6.895279789012e-01, 1.296604395080e-05, 2.8770e-01, 2.6128e-03, - 2DIAGNOSTIC, 32, -6.897531534059e-01, 1.816286467143e-05, 2.9084e-01, 3.1390e-03, - 2DIAGNOSTIC, 33, -6.896780811139e-01, 2.177341585001e-05, 2.9347e-01, 2.6278e-03, - 2DIAGNOSTIC, 34, -6.898370513879e-01, 2.873099287807e-05, 2.9600e-01, 2.5339e-03, - 2DIAGNOSTIC, 35, -6.900850878864e-01, 3.488598702138e-05, 2.9873e-01, 2.7220e-03, - 2DIAGNOSTIC, 36, -6.906757796729e-01, 4.478652565816e-05, 3.0117e-01, 2.4400e-03, - 2DIAGNOSTIC, 37, -6.909310305063e-01, 4.857685727234e-05, 3.0331e-01, 2.1400e-03, - 2DIAGNOSTIC, 38, -6.912383260772e-01, 5.174708086401e-05, 3.0574e-01, 2.4300e-03, - 2DIAGNOSTIC, 39, -6.913582575418e-01, 5.379344366769e-05, 3.0898e-01, 3.2430e-03, - 2DIAGNOSTIC, 40, -6.913772388726e-01, 5.243589821977e-05, 3.1144e-01, 2.4600e-03, - 2DIAGNOSTIC, 41, -6.913110382487e-01, 4.845302258703e-05, 3.1369e-01, 2.2540e-03, - 2DIAGNOSTIC, 42, -6.913640212051e-01, 4.291520287984e-05, 3.1585e-01, 2.1529e-03, - 2DIAGNOSTIC, 43, -6.912528804120e-01, 3.180459501666e-05, 3.1797e-01, 2.1281e-03, - 2DIAGNOSTIC, 44, -6.912817192640e-01, 2.004879616847e-05, 3.2014e-01, 2.1632e-03, - 2DIAGNOSTIC, 45, -6.913088886693e-01, 9.421091177231e-06, 3.2279e-01, 2.6541e-03, - 2DIAGNOSTIC, 46, -6.911943360071e-01, 2.706804013725e-06, 3.2479e-01, 2.0020e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.791638652577e-01, 1.797693134862e+308, 5.5429e-01, 2.2950e-01, - 2DIAGNOSTIC, 2, -5.798599847223e-01, 1.797693134862e+308, 5.6835e-01, 1.4057e-02, - 2DIAGNOSTIC, 3, -5.805526034186e-01, 1.797693134862e+308, 5.8513e-01, 1.6782e-02, - 2DIAGNOSTIC, 4, -5.809412172250e-01, 1.797693134862e+308, 6.0164e-01, 1.6508e-02, - 2DIAGNOSTIC, 5, -5.810234929898e-01, 1.797693134862e+308, 6.1835e-01, 1.6710e-02, - 2DIAGNOSTIC, 6, -5.810824822551e-01, 1.797693134862e+308, 6.3371e-01, 1.5363e-02, - 2DIAGNOSTIC, 7, -5.811606185329e-01, 1.797693134862e+308, 6.4891e-01, 1.5199e-02, - 2DIAGNOSTIC, 8, -5.812902430531e-01, 1.797693134862e+308, 6.6410e-01, 1.5188e-02, - 2DIAGNOSTIC, 9, -5.813257999470e-01, 1.797693134862e+308, 6.7930e-01, 1.5204e-02, - 2DIAGNOSTIC, 10, -5.815530914166e-01, 2.135925664658e-04, 6.9511e-01, 1.5810e-02, - 2DIAGNOSTIC, 11, -5.818602802059e-01, 1.488597267589e-04, 7.0906e-01, 1.3954e-02, - 2DIAGNOSTIC, 12, -5.832764494668e-01, 1.670507319329e-04, 7.2838e-01, 1.9317e-02, - 2DIAGNOSTIC, 13, -5.847174806530e-01, 2.461073598333e-04, 7.4407e-01, 1.5690e-02, - 2DIAGNOSTIC, 14, -5.855135540268e-01, 3.322564167850e-04, 7.9084e-01, 4.6767e-02, - 2DIAGNOSTIC, 15, -5.855135537971e-01, 3.798685080839e-04, 8.0472e-01, 1.3881e-02, - 2DIAGNOSTIC, 16, -5.855136221780e-01, 3.893301658734e-04, 8.1851e-01, 1.3795e-02, - 2DIAGNOSTIC, 17, -5.855137377750e-01, 3.637827790757e-04, 8.3165e-01, 1.3140e-02, - 2DIAGNOSTIC, 18, -5.855139331871e-01, 3.104826802931e-04, 8.4704e-01, 1.5383e-02, - 2DIAGNOSTIC, 19, -5.855141055165e-01, 2.351753685753e-04, 8.5989e-01, 1.2849e-02, - 2DIAGNOSTIC, 20, -5.855010262773e-01, 1.516664675329e-04, 8.7298e-01, 1.3095e-02, - 2DIAGNOSTIC, 21, -5.855015097503e-01, 6.908236047024e-05, 8.8618e-01, 1.3198e-02, - 2DIAGNOSTIC, 22, -5.855023250660e-01, 1.841906921903e-05, 9.0041e-01, 1.4228e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.872701011916e-01, 1.797693134862e+308, 1.2814e+00, 3.8098e-01, - 2DIAGNOSTIC, 2, -4.877807273304e-01, 1.797693134862e+308, 1.3832e+00, 1.0180e-01, - 2DIAGNOSTIC, 3, -4.881202051312e-01, 1.797693134862e+308, 1.4836e+00, 1.0043e-01, - 2DIAGNOSTIC, 4, -4.882047922340e-01, 1.797693134862e+308, 1.5786e+00, 9.4943e-02, - 2DIAGNOSTIC, 5, -4.883609073447e-01, 1.797693134862e+308, 1.6892e+00, 1.1064e-01, - 2DIAGNOSTIC, 6, -4.883523684943e-01, 1.797693134862e+308, 1.7948e+00, 1.0558e-01, - 2DIAGNOSTIC, 7, -4.883962111625e-01, 1.797693134862e+308, 1.8878e+00, 9.2998e-02, - 2DIAGNOSTIC, 8, -4.884748964778e-01, 1.797693134862e+308, 1.9924e+00, 1.0464e-01, - 2DIAGNOSTIC, 9, -4.884840712215e-01, 1.797693134862e+308, 2.1508e+00, 1.5844e-01, - 2DIAGNOSTIC, 10, -4.884947730975e-01, 1.298657624067e-04, 2.2702e+00, 1.1931e-01, - 2DIAGNOSTIC, 11, -4.884876186783e-01, 7.119672275205e-05, 2.3639e+00, 9.3742e-02, - 2DIAGNOSTIC, 12, -4.884924994269e-01, 4.086884345611e-05, 2.4835e+00, 1.1964e-01, - 2DIAGNOSTIC, 13, -4.884862154411e-01, 2.657635202517e-05, 2.6147e+00, 1.3115e-01, - 2DIAGNOSTIC, 14, -4.884885720453e-01, 1.557378250724e-05, 2.7203e+00, 1.0566e-01, - 2DIAGNOSTIC, 15, -4.884861194743e-01, 1.085725937507e-05, 2.8287e+00, 1.0837e-01, - 2DIAGNOSTIC, 16, -4.884859162354e-01, 5.607775506414e-06, 2.9357e+00, 1.0701e-01, - 2DIAGNOSTIC, 17, -4.884853151305e-01, 2.055304553980e-06, 3.0406e+00, 1.0488e-01, - 2DIAGNOSTIC, 18, -4.884823689261e-01, 1.323306975741e-06, 3.1325e+00, 9.1856e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.232924400823e-01, 1.797693134862e+308, 4.3640e+00, 1.2315e+00, - 2DIAGNOSTIC, 2, -4.235603994298e-01, 1.797693134862e+308, 4.9197e+00, 5.5570e-01, - 2DIAGNOSTIC, 3, -4.237640455521e-01, 1.797693134862e+308, 5.4686e+00, 5.4887e-01, - 2DIAGNOSTIC, 4, -4.238733975181e-01, 1.797693134862e+308, 6.0991e+00, 6.3051e-01, - 2DIAGNOSTIC, 5, -4.240067017675e-01, 1.797693134862e+308, 6.7190e+00, 6.1992e-01, - 2DIAGNOSTIC, 6, -4.239142223342e-01, 1.797693134862e+308, 7.3686e+00, 6.4962e-01, - 2DIAGNOSTIC, 7, -4.243728672643e-01, 1.797693134862e+308, 8.1489e+00, 7.8028e-01, - 2DIAGNOSTIC, 8, -4.243766108105e-01, 1.797693134862e+308, 9.0706e+00, 9.2170e-01, - 2DIAGNOSTIC, 9, -4.243757554326e-01, 1.797693134862e+308, 9.9450e+00, 8.7443e-01, - 2DIAGNOSTIC, 10, -4.243757323621e-01, 1.669770178197e-04, 1.0505e+01, 5.5947e-01, - 2DIAGNOSTIC, 11, -4.243754244313e-01, 1.217496439809e-04, 1.1106e+01, 6.0196e-01, - 2DIAGNOSTIC, 12, -4.243752560105e-01, 8.782134789082e-05, 1.1692e+01, 5.8569e-01, - 2DIAGNOSTIC, 13, -4.243748807263e-01, 6.165748314720e-05, 1.2346e+01, 6.5418e-01, - 2DIAGNOSTIC, 14, -4.243747314569e-01, 3.920533813100e-05, 1.2940e+01, 5.9347e-01, - 2DIAGNOSTIC, 15, -4.243744339149e-01, 2.268750784631e-05, 1.3576e+01, 6.3615e-01, - 2DIAGNOSTIC, 16, -4.243741707649e-01, 1.916270010269e-06, 1.4210e+01, 6.3418e-01, - 2DIAGNOSTIC, 17, -4.243742752464e-01, 1.674412271439e-06, 1.4917e+01, 7.0642e-01, - 2DIAGNOSTIC, 18, -4.243741746541e-01, 1.613905116514e-06, 1.5545e+01, 6.2852e-01, - 2DIAGNOSTIC, 19, -4.243740594484e-01, 1.539799654761e-06, 1.6166e+01, 6.2063e-01, - 2DIAGNOSTIC, 20, -4.243738022614e-01, 1.476652553851e-06, 1.6727e+01, 5.6167e-01, - 2DIAGNOSTIC, 21, -4.243737055621e-01, 1.417519227533e-06, 1.7314e+01, 5.8702e-01, - 2DIAGNOSTIC, 22, -4.243735927768e-01, 1.364385616050e-06, 1.7815e+01, 5.0058e-01, - 2DIAGNOSTIC, 23, -4.243736421661e-01, 1.313946988643e-06, 1.8340e+01, 5.2536e-01, - 2DIAGNOSTIC, 24, -4.243737253462e-01, 1.272563226691e-06, 1.8893e+01, 5.5221e-01, - 2DIAGNOSTIC, 25, -4.243738662625e-01, 1.235535805909e-06, 1.9499e+01, 6.0689e-01, - 2DIAGNOSTIC, 26, -4.243739264870e-01, 1.199502383649e-06, 2.0104e+01, 6.0493e-01, - 2DIAGNOSTIC, 27, -4.243737738085e-01, 1.167257294717e-06, 2.0716e+01, 6.1194e-01, - 2DIAGNOSTIC, 28, -4.243736771261e-01, 1.133786874108e-06, 2.1351e+01, 6.3433e-01, - 2DIAGNOSTIC, 29, -4.243738411178e-01, 1.104098348068e-06, 2.1970e+01, 6.1933e-01, - 2DIAGNOSTIC, 30, -4.243736627361e-01, 1.065812448166e-06, 2.2517e+01, 5.4739e-01, - 2DIAGNOSTIC, 31, -4.243736995346e-01, 1.028424026925e-06, 2.3161e+01, 6.4399e-01, - Elapsed time (stage 0): 2.3540e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.663312877357e-01, 1.797693134862e+308, 1.8488e-01, 1.8488e-01, - 2DIAGNOSTIC, 2, -6.683309903524e-01, 1.797693134862e+308, 1.8721e-01, 2.3289e-03, - 2DIAGNOSTIC, 3, -6.718927954328e-01, 1.797693134862e+308, 1.8944e-01, 2.2340e-03, - 2DIAGNOSTIC, 4, -6.760846576644e-01, 1.797693134862e+308, 1.9166e-01, 2.2140e-03, - 2DIAGNOSTIC, 5, -6.805376458668e-01, 1.797693134862e+308, 1.9390e-01, 2.2471e-03, - 2DIAGNOSTIC, 6, -6.840684684985e-01, 1.797693134862e+308, 1.9611e-01, 2.2061e-03, - 2DIAGNOSTIC, 7, -6.868836223073e-01, 1.797693134862e+308, 1.9830e-01, 2.1920e-03, - 2DIAGNOSTIC, 8, -6.883850992544e-01, 1.797693134862e+308, 2.0169e-01, 3.3829e-03, - 2DIAGNOSTIC, 9, -6.886452044207e-01, 1.797693134862e+308, 2.0413e-01, 2.4440e-03, - 2DIAGNOSTIC, 10, -6.887282736123e-01, 2.400120619983e-03, 2.0695e-01, 2.8200e-03, - 2DIAGNOSTIC, 11, -6.889869336110e-01, 1.836359748204e-03, 2.0992e-01, 2.9669e-03, - 2DIAGNOSTIC, 12, -6.888626664875e-01, 1.266909683357e-03, 2.1298e-01, 3.0582e-03, - 2DIAGNOSTIC, 13, -6.887698605890e-01, 7.818814160844e-04, 2.1641e-01, 3.4359e-03, - 2DIAGNOSTIC, 14, -6.888740332583e-01, 4.224959678889e-04, 2.1962e-01, 3.2072e-03, - 2DIAGNOSTIC, 15, -6.889081573604e-01, 1.961418341251e-04, 2.2221e-01, 2.5911e-03, - 2DIAGNOSTIC, 16, -6.891874658183e-01, 7.791587677275e-05, 2.2500e-01, 2.7931e-03, - 2DIAGNOSTIC, 17, -6.901561310474e-01, 5.819519868172e-05, 2.2742e-01, 2.4221e-03, - 2DIAGNOSTIC, 18, -6.907769939243e-01, 8.390347575102e-05, 2.2980e-01, 2.3739e-03, - 2DIAGNOSTIC, 19, -6.914896598452e-01, 1.204306843804e-04, 2.3234e-01, 2.5439e-03, - 2DIAGNOSTIC, 20, -6.926252307809e-01, 1.673140211991e-04, 2.3598e-01, 3.6330e-03, - 2DIAGNOSTIC, 21, -6.926701145022e-01, 1.998920938662e-04, 2.3856e-01, 2.5811e-03, - 2DIAGNOSTIC, 22, -6.927363411853e-01, 2.100367070076e-04, 2.4087e-01, 2.3160e-03, - 2DIAGNOSTIC, 23, -6.928191535785e-01, 1.996452689596e-04, 2.4306e-01, 2.1880e-03, - 2DIAGNOSTIC, 24, -6.932305952901e-01, 1.804229726100e-04, 2.4543e-01, 2.3658e-03, - 2DIAGNOSTIC, 25, -6.935140594003e-01, 1.509038641876e-04, 2.4780e-01, 2.3699e-03, - 2DIAGNOSTIC, 26, -6.935454944256e-01, 1.143058579111e-04, 2.5018e-01, 2.3792e-03, - 2DIAGNOSTIC, 27, -6.934634159348e-01, 8.364096469040e-05, 2.5263e-01, 2.4509e-03, - 2DIAGNOSTIC, 28, -6.933463317075e-01, 5.482477133167e-05, 2.5483e-01, 2.2070e-03, - 2DIAGNOSTIC, 29, -6.932298831500e-01, 3.092555434813e-05, 2.5719e-01, 2.3551e-03, - 2DIAGNOSTIC, 30, -6.932416693587e-01, 2.155118748468e-05, 2.5930e-01, 2.1081e-03, - 2DIAGNOSTIC, 31, -6.931207799222e-01, 9.846770216856e-06, 2.6149e-01, 2.1889e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.758749290879e-01, 1.797693134862e+308, 4.6272e-01, 2.0124e-01, - 2DIAGNOSTIC, 2, -5.772674409038e-01, 1.797693134862e+308, 4.7720e-01, 1.4479e-02, - 2DIAGNOSTIC, 3, -5.792022144192e-01, 1.797693134862e+308, 4.9172e-01, 1.4515e-02, - 2DIAGNOSTIC, 4, -5.816303233904e-01, 1.797693134862e+308, 5.0672e-01, 1.5002e-02, - 2DIAGNOSTIC, 5, -5.835960542611e-01, 1.797693134862e+308, 5.2142e-01, 1.4700e-02, - 2DIAGNOSTIC, 6, -5.853169601328e-01, 1.797693134862e+308, 5.3587e-01, 1.4454e-02, - 2DIAGNOSTIC, 7, -5.864117138524e-01, 1.797693134862e+308, 5.5263e-01, 1.6759e-02, - 2DIAGNOSTIC, 8, -5.876738245682e-01, 1.797693134862e+308, 5.7290e-01, 2.0268e-02, - 2DIAGNOSTIC, 9, -5.880713708671e-01, 1.797693134862e+308, 5.8759e-01, 1.4693e-02, - 2DIAGNOSTIC, 10, -5.881754587569e-01, 1.474783569463e-03, 6.0292e-01, 1.5330e-02, - 2DIAGNOSTIC, 11, -5.882709833594e-01, 1.129273225443e-03, 6.2139e-01, 1.8468e-02, - 2DIAGNOSTIC, 12, -5.883105685447e-01, 7.981214041277e-04, 6.3611e-01, 1.4722e-02, - 2DIAGNOSTIC, 13, -5.883972965801e-01, 5.204666348690e-04, 6.5282e-01, 1.6710e-02, - 2DIAGNOSTIC, 14, -5.884684460099e-01, 3.214160358852e-04, 6.7500e-01, 2.2177e-02, - 2DIAGNOSTIC, 15, -5.884730245566e-01, 1.831222859377e-04, 6.9380e-01, 1.8795e-02, - 2DIAGNOSTIC, 16, -5.884734819891e-01, 9.757358686646e-05, 7.1115e-01, 1.7354e-02, - 2DIAGNOSTIC, 17, -5.884718960615e-01, 4.371200946418e-05, 7.2822e-01, 1.7066e-02, - 2DIAGNOSTIC, 18, -5.884684411732e-01, 2.566018748962e-05, 7.4487e-01, 1.6657e-02, - 2DIAGNOSTIC, 19, -5.884671643094e-01, 1.735702963131e-05, 7.5964e-01, 1.4764e-02, - 2DIAGNOSTIC, 20, -5.884691196322e-01, 1.097399083839e-05, 7.7690e-01, 1.7267e-02, - 2DIAGNOSTIC, 21, -5.884657941858e-01, 6.478849818831e-06, 7.9414e-01, 1.7239e-02, - 2DIAGNOSTIC, 22, -5.884609872051e-01, 2.666481846852e-06, 8.0971e-01, 1.5565e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.890588237795e-01, 1.797693134862e+308, 1.1993e+00, 3.8956e-01, - 2DIAGNOSTIC, 2, -4.895521440188e-01, 1.797693134862e+308, 1.3051e+00, 1.0578e-01, - 2DIAGNOSTIC, 3, -4.901573412875e-01, 1.797693134862e+308, 1.4117e+00, 1.0662e-01, - 2DIAGNOSTIC, 4, -4.907340617936e-01, 1.797693134862e+308, 1.5159e+00, 1.0422e-01, - 2DIAGNOSTIC, 5, -4.910723071210e-01, 1.797693134862e+308, 1.6164e+00, 1.0048e-01, - 2DIAGNOSTIC, 6, -4.914672111978e-01, 1.797693134862e+308, 1.7775e+00, 1.6114e-01, - 2DIAGNOSTIC, 7, -4.915801658173e-01, 1.797693134862e+308, 1.9478e+00, 1.7027e-01, - 2DIAGNOSTIC, 8, -4.915832193732e-01, 1.797693134862e+308, 2.0477e+00, 9.9911e-02, - 2DIAGNOSTIC, 9, -4.915941144043e-01, 1.797693134862e+308, 2.1492e+00, 1.0150e-01, - 2DIAGNOSTIC, 10, -4.916098989397e-01, 3.388057028061e-04, 2.2530e+00, 1.0384e-01, - 2DIAGNOSTIC, 11, -4.916301523448e-01, 2.243645659878e-04, 2.3585e+00, 1.0549e-01, - 2DIAGNOSTIC, 12, -4.916529966540e-01, 1.336560719572e-04, 2.4613e+00, 1.0272e-01, - 2DIAGNOSTIC, 13, -4.916785553202e-01, 7.287893071278e-05, 2.5590e+00, 9.7730e-02, - 2DIAGNOSTIC, 14, -4.917093323778e-01, 3.936818728793e-05, 2.6572e+00, 9.8233e-02, - 2DIAGNOSTIC, 15, -4.917483067032e-01, 2.109274755112e-05, 2.7620e+00, 1.0478e-01, - 2DIAGNOSTIC, 16, -4.918600958106e-01, 2.155062077756e-05, 2.8790e+00, 1.1698e-01, - 2DIAGNOSTIC, 17, -4.919418454429e-01, 2.669586680114e-05, 2.9961e+00, 1.1715e-01, - 2DIAGNOSTIC, 18, -4.919805015458e-01, 3.029101287067e-05, 3.1553e+00, 1.5915e-01, - 2DIAGNOSTIC, 19, -4.919735358782e-01, 3.101766306716e-05, 3.2575e+00, 1.0226e-01, - 2DIAGNOSTIC, 20, -4.919884240012e-01, 2.985874190997e-05, 3.3597e+00, 1.0213e-01, - 2DIAGNOSTIC, 21, -4.919938167869e-01, 2.682681044580e-05, 3.4655e+00, 1.0585e-01, - 2DIAGNOSTIC, 22, -4.920012124758e-01, 2.245653872865e-05, 3.5847e+00, 1.1921e-01, - 2DIAGNOSTIC, 23, -4.920052730880e-01, 1.726042187471e-05, 3.9427e+00, 3.5794e-01, - 2DIAGNOSTIC, 24, -4.920052726403e-01, 1.178843504161e-05, 4.0478e+00, 1.0516e-01, - 2DIAGNOSTIC, 25, -4.920052732009e-01, 6.635401391876e-06, 4.1539e+00, 1.0611e-01, - 2DIAGNOSTIC, 26, -4.920052741486e-01, 3.814537290342e-06, 4.2608e+00, 1.0683e-01, - 2DIAGNOSTIC, 27, -4.920052757502e-01, 2.685965714601e-06, 4.3726e+00, 1.1179e-01, - 2DIAGNOSTIC, 28, -4.920052784546e-01, 2.301984955287e-06, 4.4734e+00, 1.0087e-01, - 2DIAGNOSTIC, 29, -4.920052830192e-01, 1.690599657440e-06, 4.5736e+00, 1.0017e-01, - 2DIAGNOSTIC, 30, -4.920052907155e-01, 1.351072440661e-06, 4.6779e+00, 1.0429e-01, - 2DIAGNOSTIC, 31, -4.920053036668e-01, 1.103816106338e-06, 4.7842e+00, 1.0632e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.245447902737e-01, 1.797693134862e+308, 6.0898e+00, 1.3056e+00, - 2DIAGNOSTIC, 2, -4.246979189513e-01, 1.797693134862e+308, 6.6934e+00, 6.0362e-01, - 2DIAGNOSTIC, 3, -4.248176166370e-01, 1.797693134862e+308, 7.3350e+00, 6.4160e-01, - 2DIAGNOSTIC, 4, -4.252957988895e-01, 1.797693134862e+308, 8.1091e+00, 7.7413e-01, - 2DIAGNOSTIC, 5, -4.256182565457e-01, 1.797693134862e+308, 9.7111e+00, 1.6020e+00, - 2DIAGNOSTIC, 6, -4.256180350906e-01, 1.797693134862e+308, 1.0549e+01, 8.3746e-01, - 2DIAGNOSTIC, 7, -4.256180184860e-01, 1.797693134862e+308, 1.1383e+01, 8.3421e-01, - 2DIAGNOSTIC, 8, -4.256176675416e-01, 1.797693134862e+308, 1.2086e+01, 7.0316e-01, - 2DIAGNOSTIC, 9, -4.256174321044e-01, 1.797693134862e+308, 1.2702e+01, 6.1571e-01, - 2DIAGNOSTIC, 10, -4.256175141216e-01, 1.761351048584e-04, 1.3396e+01, 6.9424e-01, - 2DIAGNOSTIC, 11, -4.256173120777e-01, 1.148917562038e-04, 1.4088e+01, 6.9186e-01, - 2DIAGNOSTIC, 12, -4.256170811410e-01, 6.275672968539e-05, 1.4716e+01, 6.2794e-01, - 2DIAGNOSTIC, 13, -4.256168867909e-01, 1.885767856782e-05, 1.5436e+01, 7.2023e-01, - 2DIAGNOSTIC, 14, -4.256169446655e-01, 2.124165944056e-06, 1.6124e+01, 6.8791e-01, - 2DIAGNOSTIC, 15, -4.256169005578e-01, 1.996182163802e-06, 1.6813e+01, 6.8904e-01, - 2DIAGNOSTIC, 16, -4.256168750112e-01, 1.885197725468e-06, 1.7420e+01, 6.0707e-01, - 2DIAGNOSTIC, 17, -4.256167877022e-01, 1.793344119982e-06, 1.8098e+01, 6.7836e-01, - 2DIAGNOSTIC, 18, -4.256166770541e-01, 1.702198956240e-06, 1.8863e+01, 7.6421e-01, - 2DIAGNOSTIC, 19, -4.256166137383e-01, 1.615995424559e-06, 1.9550e+01, 6.8720e-01, - 2DIAGNOSTIC, 20, -4.256165410454e-01, 1.544179651071e-06, 2.0178e+01, 6.2807e-01, - 2DIAGNOSTIC, 21, -4.256162322289e-01, 1.467505008415e-06, 2.0863e+01, 6.8520e-01, - 2DIAGNOSTIC, 22, -4.256163713251e-01, 1.399914389619e-06, 2.1569e+01, 7.0612e-01, - 2DIAGNOSTIC, 23, -4.256161896990e-01, 1.331368797715e-06, 2.2324e+01, 7.5534e-01, - 2DIAGNOSTIC, 24, -4.256161034838e-01, 1.272720002832e-06, 2.3005e+01, 6.8086e-01, - 2DIAGNOSTIC, 25, -4.256158990247e-01, 1.217190580272e-06, 2.3712e+01, 7.0690e-01, - 2DIAGNOSTIC, 26, -4.256158516381e-01, 1.169465592428e-06, 2.4398e+01, 6.8537e-01, - 2DIAGNOSTIC, 27, -4.256156372836e-01, 1.122887851687e-06, 2.5004e+01, 6.0646e-01, - 2DIAGNOSTIC, 28, -4.256154711153e-01, 1.078300179758e-06, 2.5688e+01, 6.8385e-01, - 2DIAGNOSTIC, 29, -4.256154469587e-01, 1.040370775834e-06, 2.6391e+01, 7.0321e-01, - 2DIAGNOSTIC, 30, -4.256154450491e-01, 1.008829565684e-06, 2.7080e+01, 6.8936e-01, - Elapsed time (stage 1): 2.7484e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.958009874477e-01, 1.797693134862e+308, 2.5165e-01, 2.5165e-01, - 1DIAGNOSTIC, 2, -9.041149122286e-01, 1.797693134862e+308, 3.4764e-01, 9.5989e-02, - 1DIAGNOSTIC, 3, -9.103527759531e-01, 1.797693134862e+308, 4.4032e-01, 9.2679e-02, - 1DIAGNOSTIC, 4, -9.147870940900e-01, 1.797693134862e+308, 5.3785e-01, 9.7533e-02, - 1DIAGNOSTIC, 5, -9.185210631872e-01, 1.797693134862e+308, 6.3020e-01, 9.2341e-02, - 1DIAGNOSTIC, 6, -9.215230512501e-01, 1.797693134862e+308, 7.3478e-01, 1.0458e-01, - 1DIAGNOSTIC, 7, -9.242146405058e-01, 1.797693134862e+308, 8.2915e-01, 9.4375e-02, - 1DIAGNOSTIC, 8, -9.265352497926e-01, 1.797693134862e+308, 9.2887e-01, 9.9713e-02, - 1DIAGNOSTIC, 9, -9.284858532681e-01, 1.797693134862e+308, 1.0304e+00, 1.0153e-01, - 1DIAGNOSTIC, 10, -9.302109951077e-01, 2.232357003751e-03, 1.1333e+00, 1.0291e-01, - 1DIAGNOSTIC, 11, -9.316365123808e-01, 1.652954731642e-03, 1.2276e+00, 9.4285e-02, - 1DIAGNOSTIC, 12, -9.328917078312e-01, 1.266790605669e-03, 1.3354e+00, 1.0783e-01, - 1DIAGNOSTIC, 13, -9.340193818830e-01, 9.996461864491e-04, 1.4301e+00, 9.4650e-02, - 1DIAGNOSTIC, 14, -9.349398194468e-01, 7.970182221929e-04, 1.5266e+00, 9.6494e-02, - 1DIAGNOSTIC, 15, -9.357302997191e-01, 6.411059072890e-04, 1.6298e+00, 1.0321e-01, - 1DIAGNOSTIC, 16, -9.364143119480e-01, 5.163701645783e-04, 1.7295e+00, 9.9719e-02, - 1DIAGNOSTIC, 17, -9.370052387586e-01, 4.177908652431e-04, 1.8245e+00, 9.5000e-02, - 1DIAGNOSTIC, 18, -9.375200126325e-01, 3.396930113070e-04, 1.9225e+00, 9.7972e-02, - 1DIAGNOSTIC, 19, -9.379755688865e-01, 2.769925013996e-04, 2.0181e+00, 9.5576e-02, - 1DIAGNOSTIC, 20, -9.384171488330e-01, 2.279333158256e-04, 2.1204e+00, 1.0239e-01, - 1DIAGNOSTIC, 21, -9.387676600615e-01, 1.881209793379e-04, 2.2127e+00, 9.2289e-02, - 1DIAGNOSTIC, 22, -9.390814305903e-01, 1.561264546674e-04, 2.3086e+00, 9.5863e-02, - 1DIAGNOSTIC, 23, -9.393580348962e-01, 1.309659202021e-04, 2.4072e+00, 9.8571e-02, - 1DIAGNOSTIC, 24, -9.395995535939e-01, 1.104179538204e-04, 2.5052e+00, 9.7996e-02, - 1DIAGNOSTIC, 25, -9.398102405264e-01, 9.338431738225e-05, 2.6017e+00, 9.6575e-02, - 1DIAGNOSTIC, 26, -9.399945381605e-01, 7.910237410768e-05, 2.7068e+00, 1.0511e-01, - 1DIAGNOSTIC, 27, -9.401564878565e-01, 6.698392996503e-05, 2.8032e+00, 9.6318e-02, - 1DIAGNOSTIC, 28, -9.402997891277e-01, 5.663225529343e-05, 2.9102e+00, 1.0701e-01, - 1DIAGNOSTIC, 29, -9.404272746213e-01, 4.781525996469e-05, 3.0193e+00, 1.0910e-01, - 1DIAGNOSTIC, 30, -9.405401373879e-01, 4.075607981353e-05, 3.1300e+00, 1.1069e-01, - 1DIAGNOSTIC, 31, -9.406385472169e-01, 3.476577144376e-05, 3.2352e+00, 1.0528e-01, - 1DIAGNOSTIC, 32, -9.407257426291e-01, 2.973404951249e-05, 3.3318e+00, 9.6560e-02, - 1DIAGNOSTIC, 33, -9.408024998958e-01, 2.551140000442e-05, 3.4250e+00, 9.3196e-02, - 1DIAGNOSTIC, 34, -9.408692729887e-01, 2.194075445031e-05, 3.5260e+00, 1.0105e-01, - 1DIAGNOSTIC, 35, -9.409280156655e-01, 1.889907498015e-05, 3.6236e+00, 9.7569e-02, - 1DIAGNOSTIC, 36, -9.409801118699e-01, 1.629501064243e-05, 3.7252e+00, 1.0154e-01, - 1DIAGNOSTIC, 37, -9.410253702722e-01, 1.405246658225e-05, 3.8266e+00, 1.0146e-01, - 1DIAGNOSTIC, 38, -9.410645117868e-01, 1.211765112405e-05, 3.9313e+00, 1.0469e-01, - 1DIAGNOSTIC, 39, -9.410981584029e-01, 1.045134448710e-05, 4.0353e+00, 1.0403e-01, - 1DIAGNOSTIC, 40, -9.411281258427e-01, 9.025075554340e-06, 4.1374e+00, 1.0210e-01, - 1DIAGNOSTIC, 41, -9.411551832177e-01, 7.804222687379e-06, 4.2437e+00, 1.0623e-01, - 1DIAGNOSTIC, 42, -9.411785798543e-01, 6.762746136743e-06, 4.3453e+00, 1.0166e-01, - 1DIAGNOSTIC, 43, -9.411940737255e-01, 5.841547441401e-06, 4.4465e+00, 1.0119e-01, - 1DIAGNOSTIC, 44, -9.412090463871e-01, 5.034716129830e-06, 4.5465e+00, 9.9988e-02, - 1DIAGNOSTIC, 45, -9.412921418477e-01, 4.804863736205e-06, 4.6514e+00, 1.0494e-01, - 1DIAGNOSTIC, 46, -9.413023655493e-01, 4.586523624915e-06, 4.7601e+00, 1.0862e-01, - 1DIAGNOSTIC, 47, -9.413104524107e-01, 4.351437517997e-06, 4.8649e+00, 1.0487e-01, - 1DIAGNOSTIC, 48, -9.413166885237e-01, 4.066514156732e-06, 4.9692e+00, 1.0429e-01, - 1DIAGNOSTIC, 49, -9.413213325204e-01, 3.700922186444e-06, 5.0673e+00, 9.8037e-02, - 1DIAGNOSTIC, 50, -9.413245888025e-01, 3.249846603257e-06, 5.1649e+00, 9.7623e-02, - 1DIAGNOSTIC, 51, -9.413266603606e-01, 2.735848213892e-06, 5.2668e+00, 1.0190e-01, - 1DIAGNOSTIC, 52, -9.413277728044e-01, 2.188317070557e-06, 5.3687e+00, 1.0191e-01, - 1DIAGNOSTIC, 53, -9.413282040004e-01, 1.605596603543e-06, 5.4683e+00, 9.9606e-02, - 1DIAGNOSTIC, 54, -9.413278215437e-01, 1.018115866662e-06, 5.5687e+00, 1.0036e-01, - 1DIAGNOSTIC, 55, -9.413266222981e-01, 8.628391791263e-07, 5.6702e+00, 1.0155e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.983296501974e-01, 1.797693134862e+308, 6.5106e+00, 8.4036e-01, - 1DIAGNOSTIC, 2, -9.028739175440e-01, 1.797693134862e+308, 7.1808e+00, 6.7025e-01, - 1DIAGNOSTIC, 3, -9.067610124179e-01, 1.797693134862e+308, 7.8409e+00, 6.6011e-01, - 1DIAGNOSTIC, 4, -9.094269953122e-01, 1.797693134862e+308, 8.5061e+00, 6.6516e-01, - 1DIAGNOSTIC, 5, -9.117630996180e-01, 1.797693134862e+308, 9.1804e+00, 6.7427e-01, - 1DIAGNOSTIC, 6, -9.138232999789e-01, 1.797693134862e+308, 9.8524e+00, 6.7208e-01, - 1DIAGNOSTIC, 7, -9.156262125802e-01, 1.797693134862e+308, 1.0530e+01, 6.7732e-01, - 1DIAGNOSTIC, 8, -9.172416738851e-01, 1.797693134862e+308, 1.1200e+01, 6.6984e-01, - 1DIAGNOSTIC, 9, -9.186956774629e-01, 1.797693134862e+308, 1.1881e+01, 6.8165e-01, - 1DIAGNOSTIC, 10, -9.199980056739e-01, 1.440155220758e-03, 1.2557e+01, 6.7569e-01, - 1DIAGNOSTIC, 11, -9.209745700997e-01, 1.108179865991e-03, 1.3237e+01, 6.7991e-01, - 1DIAGNOSTIC, 12, -9.219509741553e-01, 8.741972668979e-04, 1.3916e+01, 6.7963e-01, - 1DIAGNOSTIC, 13, -9.227403613054e-01, 7.085606168275e-04, 1.4595e+01, 6.7869e-01, - 1DIAGNOSTIC, 14, -9.234455634575e-01, 5.765569090837e-04, 1.5286e+01, 6.9072e-01, - 1DIAGNOSTIC, 15, -9.240988214025e-01, 4.710271340534e-04, 1.5995e+01, 7.0884e-01, - 1DIAGNOSTIC, 16, -9.246971585664e-01, 3.867912416497e-04, 1.6674e+01, 6.7884e-01, - 1DIAGNOSTIC, 17, -9.252409792027e-01, 3.194395401806e-04, 1.7363e+01, 6.8932e-01, - 1DIAGNOSTIC, 18, -9.257399265125e-01, 2.662536390804e-04, 1.8042e+01, 6.7925e-01, - 1DIAGNOSTIC, 19, -9.262019715228e-01, 2.250536918056e-04, 1.8717e+01, 6.7469e-01, - 1DIAGNOSTIC, 20, -9.266204052807e-01, 1.936311788693e-04, 1.9395e+01, 6.7823e-01, - 1DIAGNOSTIC, 21, -9.269995807958e-01, 1.670343461205e-04, 2.0062e+01, 6.6646e-01, - 1DIAGNOSTIC, 22, -9.273354897308e-01, 1.456712563706e-04, 2.0734e+01, 6.7261e-01, - 1DIAGNOSTIC, 23, -9.276583717757e-01, 1.274732846419e-04, 2.1412e+01, 6.7792e-01, - 1DIAGNOSTIC, 24, -9.279488868456e-01, 1.116486205770e-04, 2.2095e+01, 6.8329e-01, - 1DIAGNOSTIC, 25, -9.282243786034e-01, 9.808087530171e-05, 2.2774e+01, 6.7904e-01, - 1DIAGNOSTIC, 26, -9.284790294347e-01, 8.647444525260e-05, 2.3450e+01, 6.7543e-01, - 1DIAGNOSTIC, 27, -9.287146306035e-01, 7.651386364788e-05, 2.4128e+01, 6.7856e-01, - 1DIAGNOSTIC, 28, -9.289332447873e-01, 6.797904856021e-05, 2.4809e+01, 6.8113e-01, - 1DIAGNOSTIC, 29, -9.291361734244e-01, 6.071425606304e-05, 2.5474e+01, 6.6405e-01, - 1DIAGNOSTIC, 30, -9.293243104315e-01, 5.446226196614e-05, 2.6140e+01, 6.6675e-01, - 1DIAGNOSTIC, 31, -9.295029736448e-01, 4.904792325127e-05, 2.6812e+01, 6.7148e-01, - 1DIAGNOSTIC, 32, -9.296692964879e-01, 4.420185848927e-05, 2.7469e+01, 6.5695e-01, - 1DIAGNOSTIC, 33, -9.298161948061e-01, 3.988963149665e-05, 2.8136e+01, 6.6769e-01, - 1DIAGNOSTIC, 34, -9.299620245439e-01, 3.604646340946e-05, 2.8807e+01, 6.7034e-01, - 1DIAGNOSTIC, 35, -9.300990733779e-01, 3.267535135943e-05, 2.9484e+01, 6.7680e-01, - 1DIAGNOSTIC, 36, -9.302198340267e-01, 2.964313986245e-05, 3.0162e+01, 6.7893e-01, - 1DIAGNOSTIC, 37, -9.303313469604e-01, 2.689409026614e-05, 3.0842e+01, 6.7928e-01, - 1DIAGNOSTIC, 38, -9.304426526990e-01, 2.445467517793e-05, 3.1513e+01, 6.7109e-01, - 1DIAGNOSTIC, 39, -9.305526399744e-01, 2.233010397399e-05, 3.2188e+01, 6.7492e-01, - 1DIAGNOSTIC, 40, -9.306577943138e-01, 2.048721292581e-05, 3.2866e+01, 6.7783e-01, - 1DIAGNOSTIC, 41, -9.307562551631e-01, 1.891032229585e-05, 3.3545e+01, 6.7952e-01, - 1DIAGNOSTIC, 42, -9.308504523102e-01, 1.756652043496e-05, 3.4225e+01, 6.7954e-01, - 1DIAGNOSTIC, 43, -9.309549373129e-01, 1.645671265646e-05, 3.4913e+01, 6.8792e-01, - 1DIAGNOSTIC, 44, -9.310414937198e-01, 1.549525641305e-05, 3.5598e+01, 6.8513e-01, - 1DIAGNOSTIC, 45, -9.311241661750e-01, 1.464862255669e-05, 3.6264e+01, 6.6619e-01, - 1DIAGNOSTIC, 46, -9.312033524559e-01, 1.382795616331e-05, 3.6938e+01, 6.7436e-01, - 1DIAGNOSTIC, 47, -9.312796453044e-01, 1.299828335324e-05, 3.7600e+01, 6.6156e-01, - 1DIAGNOSTIC, 48, -9.313497593778e-01, 1.216882112105e-05, 3.8269e+01, 6.6879e-01, - 1DIAGNOSTIC, 49, -9.314207578945e-01, 1.139238674435e-05, 3.8986e+01, 7.1739e-01, - 1DIAGNOSTIC, 50, -9.314884887432e-01, 1.066834680479e-05, 3.9681e+01, 6.9517e-01, - 1DIAGNOSTIC, 51, -9.315546718425e-01, 9.991640266934e-06, 4.0347e+01, 6.6626e-01, - 1DIAGNOSTIC, 52, -9.316151215027e-01, 9.342405413101e-06, 4.1017e+01, 6.6953e-01, - 1DIAGNOSTIC, 53, -9.316701149363e-01, 8.794378021305e-06, 4.1691e+01, 6.7386e-01, - 1DIAGNOSTIC, 54, -9.317273235998e-01, 8.288711365743e-06, 4.2373e+01, 6.8249e-01, - 1DIAGNOSTIC, 55, -9.317828640572e-01, 7.823783654767e-06, 4.3064e+01, 6.9033e-01, - 1DIAGNOSTIC, 56, -9.318365918604e-01, 7.398816341670e-06, 4.3734e+01, 6.7041e-01, - 1DIAGNOSTIC, 57, -9.318878624816e-01, 7.011957077134e-06, 4.4402e+01, 6.6786e-01, - 1DIAGNOSTIC, 58, -9.319371800338e-01, 6.643012632934e-06, 4.5066e+01, 6.6389e-01, - 1DIAGNOSTIC, 59, -9.319845439126e-01, 6.309115100078e-06, 4.5743e+01, 6.7687e-01, - 1DIAGNOSTIC, 60, -9.320299123989e-01, 6.002317259439e-06, 4.6410e+01, 6.6707e-01, - 1DIAGNOSTIC, 61, -9.320738557653e-01, 5.726580956440e-06, 4.7078e+01, 6.6818e-01, - 1DIAGNOSTIC, 62, -9.321097601166e-01, 5.430224513634e-06, 4.7753e+01, 6.7522e-01, - 1DIAGNOSTIC, 63, -9.321513142599e-01, 5.135326514912e-06, 4.8432e+01, 6.7920e-01, - 1DIAGNOSTIC, 64, -9.321915002251e-01, 4.864735473217e-06, 4.9112e+01, 6.7929e-01, - 1DIAGNOSTIC, 65, -9.322309346968e-01, 4.624253084260e-06, 4.9779e+01, 6.6693e-01, - 1DIAGNOSTIC, 66, -9.322680514426e-01, 4.410032761307e-06, 5.0476e+01, 6.9711e-01, - 1DIAGNOSTIC, 67, -9.323044237545e-01, 4.220795772347e-06, 5.1144e+01, 6.6838e-01, - 1DIAGNOSTIC, 68, -9.323399993742e-01, 4.054576124200e-06, 5.1815e+01, 6.7145e-01, - 1DIAGNOSTIC, 69, -9.323744782205e-01, 3.906327768598e-06, 5.2506e+01, 6.9093e-01, - 1DIAGNOSTIC, 70, -9.324073302586e-01, 3.768324929421e-06, 5.3192e+01, 6.8580e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.730574448518e-01, 1.797693134862e+308, 5.8815e+01, 5.6231e+00, - 1DIAGNOSTIC, 2, -8.762423173859e-01, 1.797693134862e+308, 6.4175e+01, 5.3593e+00, - 1DIAGNOSTIC, 3, -8.797958950733e-01, 1.797693134862e+308, 6.9598e+01, 5.4230e+00, - 1DIAGNOSTIC, 4, -8.831600119233e-01, 1.797693134862e+308, 7.4985e+01, 5.3872e+00, - 1DIAGNOSTIC, 5, -8.860265383144e-01, 1.797693134862e+308, 8.0395e+01, 5.4103e+00, - 1DIAGNOSTIC, 6, -8.884963823602e-01, 1.797693134862e+308, 8.5766e+01, 5.3706e+00, - 1DIAGNOSTIC, 7, -8.906669847151e-01, 1.797693134862e+308, 9.1191e+01, 5.4250e+00, - 1DIAGNOSTIC, 8, -8.926151920195e-01, 1.797693134862e+308, 9.6561e+01, 5.3705e+00, - 1DIAGNOSTIC, 9, -8.944100045517e-01, 1.797693134862e+308, 1.0199e+02, 5.4302e+00, - 1DIAGNOSTIC, 10, -8.959451472792e-01, 1.660644073705e-03, 1.0740e+02, 5.4086e+00, - 1DIAGNOSTIC, 11, -8.973796147964e-01, 1.359568200119e-03, 1.1289e+02, 5.4942e+00, - 1DIAGNOSTIC, 12, -8.987671235605e-01, 1.107866197435e-03, 1.1830e+02, 5.4051e+00, - 1DIAGNOSTIC, 13, -9.000016420968e-01, 9.116473685275e-04, 1.2384e+02, 5.5447e+00, - 1DIAGNOSTIC, 14, -9.012259312322e-01, 7.646212173306e-04, 1.2926e+02, 5.4120e+00, - 1DIAGNOSTIC, 15, -9.024022330038e-01, 6.528169253627e-04, 1.3469e+02, 5.4348e+00, - 1DIAGNOSTIC, 16, -9.035066131169e-01, 5.658546749929e-04, 1.4010e+02, 5.4097e+00, - 1DIAGNOSTIC, 17, -9.044905045488e-01, 4.957121902040e-04, 1.4554e+02, 5.4410e+00, - 1DIAGNOSTIC, 18, -9.053689529096e-01, 4.372038406983e-04, 1.5094e+02, 5.3946e+00, - 1DIAGNOSTIC, 19, -9.061638755701e-01, 3.874600108525e-04, 1.5638e+02, 5.4463e+00, - 1DIAGNOSTIC, 20, -9.068904232581e-01, 3.423983266636e-04, 1.6178e+02, 5.4019e+00, - 1DIAGNOSTIC, 21, -9.075571583503e-01, 3.012927427830e-04, 1.6722e+02, 5.4326e+00, - 1DIAGNOSTIC, 22, -9.081679254817e-01, 2.644918974691e-04, 1.7265e+02, 5.4286e+00, - 1DIAGNOSTIC, 23, -9.087361109808e-01, 2.308880441727e-04, 1.7806e+02, 5.4133e+00, - 1DIAGNOSTIC, 24, -9.092661555166e-01, 2.014984462859e-04, 1.8347e+02, 5.4065e+00, - 1DIAGNOSTIC, 25, -9.097667852837e-01, 1.766780233619e-04, 1.8888e+02, 5.4135e+00, - 1DIAGNOSTIC, 26, -9.102365057379e-01, 1.562312946207e-04, 1.9427e+02, 5.3869e+00, - 1DIAGNOSTIC, 27, -9.106813395286e-01, 1.392647634190e-04, 1.9965e+02, 5.3857e+00, - 1DIAGNOSTIC, 28, -9.111064452207e-01, 1.250514573023e-04, 2.0515e+02, 5.4977e+00, - 1DIAGNOSTIC, 29, -9.115161345524e-01, 1.131016641096e-04, 2.1061e+02, 5.4574e+00, - 1DIAGNOSTIC, 30, -9.119102811197e-01, 1.030285346679e-04, 2.1604e+02, 5.4300e+00, - 1DIAGNOSTIC, 31, -9.122932679873e-01, 9.452852004684e-05, 2.2148e+02, 5.4481e+00, - 1DIAGNOSTIC, 32, -9.126643512635e-01, 8.727666155712e-05, 2.2689e+02, 5.4060e+00, - 1DIAGNOSTIC, 33, -9.130342518949e-01, 8.114990547110e-05, 2.3231e+02, 5.4198e+00, - 1DIAGNOSTIC, 34, -9.133800795892e-01, 7.579939876497e-05, 2.3771e+02, 5.4031e+00, - 1DIAGNOSTIC, 35, -9.137088779296e-01, 7.102799154276e-05, 2.4316e+02, 5.4506e+00, - 1DIAGNOSTIC, 36, -9.140246281365e-01, 6.665314920543e-05, 2.4862e+02, 5.4597e+00, - 1DIAGNOSTIC, 37, -9.143204073053e-01, 6.248777303816e-05, 2.5404e+02, 5.4119e+00, - 1DIAGNOSTIC, 38, -9.146002436956e-01, 5.844542015188e-05, 2.5945e+02, 5.4123e+00, - 1DIAGNOSTIC, 39, -9.148635940535e-01, 5.449028472204e-05, 2.6491e+02, 5.4614e+00, - 1DIAGNOSTIC, 40, -9.151115881919e-01, 5.060929309040e-05, 2.7033e+02, 5.4212e+00, - 1DIAGNOSTIC, 41, -9.153426068656e-01, 4.682184629324e-05, 2.7573e+02, 5.4019e+00, - 1DIAGNOSTIC, 42, -9.155648354058e-01, 4.320804379264e-05, 2.8118e+02, 5.4497e+00, - 1DIAGNOSTIC, 43, -9.157729008870e-01, 3.988426407888e-05, 2.8661e+02, 5.4317e+00, - 1DIAGNOSTIC, 44, -9.159713660316e-01, 3.681339570749e-05, 2.9201e+02, 5.3949e+00, - 1DIAGNOSTIC, 45, -9.161592025904e-01, 3.399266198028e-05, 2.9743e+02, 5.4204e+00, - 1DIAGNOSTIC, 46, -9.163364020022e-01, 3.143747959946e-05, 3.0286e+02, 5.4346e+00, - 1DIAGNOSTIC, 47, -9.165048015308e-01, 2.911337838385e-05, 3.0827e+02, 5.4069e+00, - 1DIAGNOSTIC, 48, -9.166634749385e-01, 2.699732598303e-05, 3.1366e+02, 5.3853e+00, - 1DIAGNOSTIC, 49, -9.168124395391e-01, 2.505476426277e-05, 3.1908e+02, 5.4267e+00, - 1DIAGNOSTIC, 50, -9.169540577476e-01, 2.326806476636e-05, 3.2454e+02, 5.4605e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.794833074426e-01, 1.797693134862e+308, 3.7029e+02, 4.5746e+01, - 1DIAGNOSTIC, 2, -8.810497027085e-01, 1.797693134862e+308, 4.1434e+02, 4.4050e+01, - 1DIAGNOSTIC, 3, -8.827541211041e-01, 1.797693134862e+308, 4.5851e+02, 4.4169e+01, - 1DIAGNOSTIC, 4, -8.845131389166e-01, 1.797693134862e+308, 5.0229e+02, 4.3784e+01, - 1DIAGNOSTIC, 5, -8.861611625943e-01, 1.797693134862e+308, 5.4642e+02, 4.4126e+01, - 1DIAGNOSTIC, 6, -8.877418363599e-01, 1.797693134862e+308, 5.9056e+02, 4.4138e+01, - 1DIAGNOSTIC, 7, -8.892837484925e-01, 1.797693134862e+308, 6.3428e+02, 4.3720e+01, - 1DIAGNOSTIC, 8, -8.906350053742e-01, 1.797693134862e+308, 6.7908e+02, 4.4802e+01, - 1DIAGNOSTIC, 9, -8.918270852055e-01, 1.797693134862e+308, 7.2302e+02, 4.3942e+01, - 1DIAGNOSTIC, 10, -8.929236454383e-01, 9.929410063523e-04, 7.6693e+02, 4.3912e+01, - 1DIAGNOSTIC, 11, -8.938641925833e-01, 8.525107194422e-04, 8.1115e+02, 4.4215e+01, - 1DIAGNOSTIC, 12, -8.948820923419e-01, 7.275249271461e-04, 8.5569e+02, 4.4544e+01, - 1DIAGNOSTIC, 13, -8.957203486532e-01, 6.180901557465e-04, 8.9993e+02, 4.4242e+01, - 1DIAGNOSTIC, 14, -8.966644122261e-01, 5.295480697325e-04, 9.4433e+02, 4.4400e+01, - 1DIAGNOSTIC, 15, -8.974319801259e-01, 4.555466861143e-04, 9.8851e+02, 4.4175e+01, - 1DIAGNOSTIC, 16, -8.981366303643e-01, 3.943163971184e-04, 1.0326e+03, 4.4087e+01, - 1DIAGNOSTIC, 17, -8.988000507582e-01, 3.451464706999e-04, 1.0767e+03, 4.4071e+01, - 1DIAGNOSTIC, 18, -8.994199034683e-01, 3.042590924653e-04, 1.1209e+03, 4.4199e+01, - 1DIAGNOSTIC, 19, -8.999822401981e-01, 2.687234474077e-04, 1.1660e+03, 4.5139e+01, - 1DIAGNOSTIC, 20, -9.005224616707e-01, 2.377503014639e-04, 1.2108e+03, 4.4778e+01, - Elapsed time (stage 2): 1211 - - -Total elapsed time: 1262 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:26 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-T1map_to-fsnative_InverseWarped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:26 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:29 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:34 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:37 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:37 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29808 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:38 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:41 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:42 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29853 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:42 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/anat/sub-PNC006_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:45 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:45 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29908 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:45 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 29913 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:45 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:49 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:51 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:51 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:52 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:53 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:56 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:56 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:57 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:54:58 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:00 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:00 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:00 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:00 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:01 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:01 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:01 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/surf/sub-PNC006_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:01 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:10 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:21 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01/sub-PNC006_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC006 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:22 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC006 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:22 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC006 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:23 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30532 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:24 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:24 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc/sub-PNC006_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/xfm/sub-PNC006_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 30561 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:26 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:26 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC006_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 71.367 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/logs/proc_func_18-03-2024-15655.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:31 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC006 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-01/QC/sub-PNC006_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/29115_micapipe_proc-func_sub-PNC006_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC006* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 71.433 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC006_ses-01 -========================reprocessing without filter=================== -sub-PNC006_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC006 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC006 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC006 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC006 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:36 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:55:36 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-1_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 18:57:51 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:00:06 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:00:20 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.33 (mm) at sub-brick 5 -++ Max delta displ in automask = 0.37 (mm) at sub-brick 61 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:14:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:14:28 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-2_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:16:55 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:19:25 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-02/func/sub-PNC006_ses-02_task-rest_echo-3_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:22:05 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.186 -2.074 2.323 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 80.8 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.256 -2.528 4.196 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 80.9 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:27:37 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:28:12 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55a97bb0e6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.8983, 1.9] - Origin: [106.561, 52.5788, -110.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.8983 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a97b985730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a97bb25320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55a97bb11fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [81.4958, 113.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a97bb17e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a97c322230 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55a97c3205c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.8983, 1.9] - Origin: [106.561, 52.5788, -110.503] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.8983 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a97bb143f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a97cf5c450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55a97c31eda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [81.4958, 113.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a97bb1b360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a97d756780 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.262723288161e-01, 1.797693134862e+308, 6.2472e-02, 6.2472e-02, - 2DIAGNOSTIC, 2, -5.281181101659e-01, 1.797693134862e+308, 6.4425e-02, 1.9529e-03, - 2DIAGNOSTIC, 3, -5.304561489522e-01, 1.797693134862e+308, 7.0057e-02, 5.6319e-03, - 2DIAGNOSTIC, 4, -5.332998032835e-01, 1.797693134862e+308, 7.1631e-02, 1.5740e-03, - 2DIAGNOSTIC, 5, -5.413960634636e-01, 1.797693134862e+308, 7.3289e-02, 1.6582e-03, - 2DIAGNOSTIC, 6, -5.500972863116e-01, 1.797693134862e+308, 7.4858e-02, 1.5690e-03, - 2DIAGNOSTIC, 7, -5.644739290189e-01, 1.797693134862e+308, 7.8304e-02, 3.4461e-03, - 2DIAGNOSTIC, 8, -6.023645961404e-01, 1.797693134862e+308, 8.0541e-02, 2.2371e-03, - 2DIAGNOSTIC, 9, -6.069922160167e-01, 1.797693134862e+308, 8.2139e-02, 1.5972e-03, - 2DIAGNOSTIC, 10, -6.153788173715e-01, 1.139895246892e-02, 8.4407e-02, 2.2681e-03, - 2DIAGNOSTIC, 11, -6.197329800282e-01, 1.135475996837e-02, 8.6487e-02, 2.0800e-03, - 2DIAGNOSTIC, 12, -6.205247066478e-01, 1.040616986501e-02, 8.8583e-02, 2.0969e-03, - 2DIAGNOSTIC, 13, -6.230304309279e-01, 8.849306251900e-03, 9.0178e-02, 1.5950e-03, - 2DIAGNOSTIC, 14, -6.234984860282e-01, 6.844957992452e-03, 9.1894e-02, 1.7152e-03, - 2DIAGNOSTIC, 15, -6.241068251766e-01, 4.802870677353e-03, 9.3841e-02, 1.9469e-03, - 2DIAGNOSTIC, 16, -6.247035374240e-01, 2.879883666015e-03, 9.5364e-02, 1.5230e-03, - 2DIAGNOSTIC, 17, -6.256674071131e-01, 1.345265938843e-03, 1.0101e-01, 5.6441e-03, - 2DIAGNOSTIC, 18, -6.277053381953e-01, 9.397761335675e-04, 1.0325e-01, 2.2430e-03, - 2DIAGNOSTIC, 19, -6.287266858368e-01, 6.302892075913e-04, 1.0494e-01, 1.6870e-03, - 2DIAGNOSTIC, 20, -6.279282875859e-01, 4.756787966332e-04, 1.0687e-01, 1.9321e-03, - 2DIAGNOSTIC, 21, -6.281017162433e-01, 3.973102140310e-04, 1.0914e-01, 2.2690e-03, - 2DIAGNOSTIC, 22, -6.286932489482e-01, 3.178553448113e-04, 1.1170e-01, 2.5630e-03, - 2DIAGNOSTIC, 23, -6.282855340437e-01, 2.582218191653e-04, 1.1360e-01, 1.8959e-03, - 2DIAGNOSTIC, 24, -6.283396526483e-01, 1.902292097487e-04, 1.1573e-01, 2.1350e-03, - 2DIAGNOSTIC, 25, -6.283984584821e-01, 1.236499180345e-04, 1.1774e-01, 2.0089e-03, - 2DIAGNOSTIC, 26, -6.284894869848e-01, 6.353252563416e-05, 1.1978e-01, 2.0368e-03, - 2DIAGNOSTIC, 27, -6.286029426469e-01, 1.985169384264e-05, 1.2306e-01, 3.2828e-03, - 2DIAGNOSTIC, 28, -6.286199067273e-01, 1.173398969759e-05, 1.2513e-01, 2.0711e-03, - 2DIAGNOSTIC, 29, -6.286343658021e-01, 2.063358727736e-05, 1.2714e-01, 2.0039e-03, - 2DIAGNOSTIC, 30, -6.286824071824e-01, 1.524344004369e-05, 1.2913e-01, 1.9960e-03, - 2DIAGNOSTIC, 31, -6.287539725000e-01, 1.222448129510e-05, 1.3117e-01, 2.0349e-03, - 2DIAGNOSTIC, 32, -6.293065411745e-01, 2.525970560552e-05, 1.3450e-01, 3.3281e-03, - 2DIAGNOSTIC, 33, -6.293226678206e-01, 2.941710560730e-05, 1.3620e-01, 1.7059e-03, - 2DIAGNOSTIC, 34, -6.293517983711e-01, 3.188403221407e-05, 1.3783e-01, 1.6251e-03, - 2DIAGNOSTIC, 35, -6.294061579775e-01, 3.286589040938e-05, 1.3990e-01, 2.0759e-03, - 2DIAGNOSTIC, 36, -6.294123259908e-01, 3.192566430998e-05, 1.4154e-01, 1.6339e-03, - 2DIAGNOSTIC, 37, -6.294423294334e-01, 2.979485519387e-05, 1.4307e-01, 1.5380e-03, - 2DIAGNOSTIC, 38, -6.294855516992e-01, 2.575500850561e-05, 1.4594e-01, 2.8651e-03, - 2DIAGNOSTIC, 39, -6.294908080254e-01, 1.987736920104e-05, 1.4788e-01, 1.9410e-03, - 2DIAGNOSTIC, 40, -6.294988985779e-01, 1.319642353893e-05, 1.5000e-01, 2.1150e-03, - 2DIAGNOSTIC, 41, -6.295180081592e-01, 6.528806844392e-06, 1.5172e-01, 1.7231e-03, - 2DIAGNOSTIC, 42, -6.295812331011e-01, 6.452967817955e-06, 1.5368e-01, 1.9600e-03, - 2DIAGNOSTIC, 43, -6.296852067832e-01, 7.110546440162e-06, 1.5629e-01, 2.6100e-03, - 2DIAGNOSTIC, 44, -6.299542403761e-01, 1.024250592980e-05, 1.5897e-01, 2.6801e-03, - 2DIAGNOSTIC, 45, -6.297169984275e-01, 1.038949989325e-05, 1.6162e-01, 2.6529e-03, - 2DIAGNOSTIC, 46, -6.297233661407e-01, 9.841776572202e-06, 1.6360e-01, 1.9829e-03, - 2DIAGNOSTIC, 47, -6.297677571893e-01, 9.165526564967e-06, 1.6631e-01, 2.7020e-03, - 2DIAGNOSTIC, 48, -6.297721757556e-01, 8.091628994972e-06, 1.7269e-01, 6.3820e-03, - 2DIAGNOSTIC, 49, -6.297722998081e-01, 6.380164607092e-06, 1.7553e-01, 2.8400e-03, - 2DIAGNOSTIC, 50, -6.297723095119e-01, 4.318571502786e-06, 1.7858e-01, 3.0529e-03, - 2DIAGNOSTIC, 51, -6.297723105898e-01, 2.202600855809e-06, 1.8129e-01, 2.7130e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -2.858361139847e-01, 1.797693134862e+308, 2.3871e-01, 5.7414e-02, - 2DIAGNOSTIC, 2, -2.853341641718e-01, 1.797693134862e+308, 2.4170e-01, 2.9869e-03, - 2DIAGNOSTIC, 3, -2.872512156382e-01, 1.797693134862e+308, 2.4448e-01, 2.7821e-03, - 2DIAGNOSTIC, 4, -2.898489215596e-01, 1.797693134862e+308, 2.4739e-01, 2.9130e-03, - 2DIAGNOSTIC, 5, -2.925781589222e-01, 1.797693134862e+308, 2.5030e-01, 2.9130e-03, - 2DIAGNOSTIC, 6, -2.991338685892e-01, 1.797693134862e+308, 2.5313e-01, 2.8300e-03, - 2DIAGNOSTIC, 7, -3.064741497384e-01, 1.797693134862e+308, 2.5601e-01, 2.8770e-03, - 2DIAGNOSTIC, 8, -3.407303777624e-01, 1.797693134862e+308, 2.5892e-01, 2.9070e-03, - 2DIAGNOSTIC, 9, -3.494321865417e-01, 1.797693134862e+308, 2.6249e-01, 3.5729e-03, - 2DIAGNOSTIC, 10, -3.605185086879e-01, 1.625244510377e-02, 2.6778e-01, 5.2860e-03, - 2DIAGNOSTIC, 11, -3.906476524865e-01, 1.913967374805e-02, 2.7087e-01, 3.0930e-03, - 2DIAGNOSTIC, 12, -4.011020138998e-01, 2.037458201004e-02, 2.7660e-01, 5.7311e-03, - 2DIAGNOSTIC, 13, -4.048459604434e-01, 1.990815234652e-02, 2.7956e-01, 2.9628e-03, - 2DIAGNOSTIC, 14, -4.053100208776e-01, 1.794519476360e-02, 2.8254e-01, 2.9800e-03, - 2DIAGNOSTIC, 15, -4.109511903870e-01, 1.514587329238e-02, 2.8622e-01, 3.6800e-03, - 2DIAGNOSTIC, 16, -4.212242334050e-01, 1.221838412970e-02, 2.9048e-01, 4.2520e-03, - 2DIAGNOSTIC, 17, -4.215451336455e-01, 8.901995293077e-03, 2.9415e-01, 3.6712e-03, - 2DIAGNOSTIC, 18, -4.234970398855e-01, 6.844894854511e-03, 2.9779e-01, 3.6399e-03, - 2DIAGNOSTIC, 19, -4.246866934288e-01, 4.841019840899e-03, 3.0157e-01, 3.7868e-03, - 2DIAGNOSTIC, 20, -4.264503925529e-01, 3.099697498383e-03, 3.0499e-01, 3.4120e-03, - 2DIAGNOSTIC, 21, -4.273031864909e-01, 2.399869169119e-03, 3.0840e-01, 3.4130e-03, - 2DIAGNOSTIC, 22, -4.274754627240e-01, 1.923946904336e-03, 3.1125e-01, 2.8501e-03, - 2DIAGNOSTIC, 23, -4.275445985705e-01, 1.451870796095e-03, 3.1423e-01, 2.9809e-03, - 2DIAGNOSTIC, 24, -4.276505210411e-01, 9.063268100632e-04, 3.1726e-01, 3.0270e-03, - 2DIAGNOSTIC, 25, -4.278805931558e-01, 4.953378324180e-04, 3.2107e-01, 3.8140e-03, - 2DIAGNOSTIC, 26, -4.277950238506e-01, 3.699512678824e-04, 3.2395e-01, 2.8801e-03, - 2DIAGNOSTIC, 27, -4.279812017878e-01, 2.342726595678e-04, 3.2718e-01, 3.2289e-03, - 2DIAGNOSTIC, 28, -4.281114047587e-01, 1.430973558368e-04, 3.3070e-01, 3.5219e-03, - 2DIAGNOSTIC, 29, -4.281608670230e-01, 7.631490532786e-05, 3.3720e-01, 6.4950e-03, - 2DIAGNOSTIC, 30, -4.281921203585e-01, 5.122687351894e-05, 3.4042e-01, 3.2239e-03, - 2DIAGNOSTIC, 31, -4.282480170855e-01, 4.484462725311e-05, 3.4426e-01, 3.8412e-03, - 2DIAGNOSTIC, 32, -4.282614102541e-01, 3.903085781739e-05, 3.4720e-01, 2.9399e-03, - 2DIAGNOSTIC, 33, -4.282430679133e-01, 3.106175570786e-05, 3.5007e-01, 2.8729e-03, - 2DIAGNOSTIC, 34, -4.282667076498e-01, 2.346015361804e-05, 3.5644e-01, 6.3629e-03, - 2DIAGNOSTIC, 35, -4.284701692671e-01, 2.334761312369e-05, 3.5990e-01, 3.4602e-03, - 2DIAGNOSTIC, 36, -4.286319411974e-01, 2.246063796314e-05, 3.6455e-01, 4.6520e-03, - 2DIAGNOSTIC, 37, -4.287096403023e-01, 2.466263562278e-05, 3.6808e-01, 3.5350e-03, - 2DIAGNOSTIC, 38, -4.285921741099e-01, 2.478574332371e-05, 3.7113e-01, 3.0441e-03, - 2DIAGNOSTIC, 39, -4.285951252429e-01, 2.370962041128e-05, 3.7442e-01, 3.2959e-03, - 2DIAGNOSTIC, 40, -4.286090610950e-01, 2.122365471895e-05, 3.7786e-01, 3.4351e-03, - 2DIAGNOSTIC, 41, -4.286164259280e-01, 1.792862508947e-05, 3.8145e-01, 3.5889e-03, - 2DIAGNOSTIC, 42, -4.285813404126e-01, 1.284994719606e-05, 3.8494e-01, 3.4881e-03, - 2DIAGNOSTIC, 43, -4.286218813271e-01, 7.371698536103e-06, 3.8798e-01, 3.0448e-03, - 2DIAGNOSTIC, 44, -4.286294999620e-01, 1.981309055082e-06, 3.9101e-01, 3.0310e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.206500387258e-01, 1.797693134862e+308, 4.7725e-01, 8.6238e-02, - 2DIAGNOSTIC, 2, -3.211893284186e-01, 1.797693134862e+308, 4.9309e-01, 1.5836e-02, - 2DIAGNOSTIC, 3, -3.222699990735e-01, 1.797693134862e+308, 5.0727e-01, 1.4185e-02, - 2DIAGNOSTIC, 4, -3.245202899469e-01, 1.797693134862e+308, 5.2199e-01, 1.4720e-02, - 2DIAGNOSTIC, 5, -3.259683900461e-01, 1.797693134862e+308, 5.3932e-01, 1.7333e-02, - 2DIAGNOSTIC, 6, -3.283886105103e-01, 1.797693134862e+308, 5.5433e-01, 1.5009e-02, - 2DIAGNOSTIC, 7, -3.343640542512e-01, 1.797693134862e+308, 5.6958e-01, 1.5244e-02, - 2DIAGNOSTIC, 8, -3.391102387451e-01, 1.797693134862e+308, 5.8531e-01, 1.5735e-02, - 2DIAGNOSTIC, 9, -3.483606844982e-01, 1.797693134862e+308, 6.0137e-01, 1.6056e-02, - 2DIAGNOSTIC, 10, -3.715739272732e-01, 7.795738503945e-03, 6.2522e-01, 2.3850e-02, - 2DIAGNOSTIC, 11, -3.758926895593e-01, 9.315178717569e-03, 6.4085e-01, 1.5635e-02, - 2DIAGNOSTIC, 12, -3.931892602839e-01, 1.093554930841e-02, 6.5672e-01, 1.5870e-02, - 2DIAGNOSTIC, 13, -4.260913614804e-01, 1.333285819620e-02, 6.7624e-01, 1.9515e-02, - 2DIAGNOSTIC, 14, -4.424535305148e-01, 1.509535339925e-02, 7.0154e-01, 2.5304e-02, - 2DIAGNOSTIC, 15, -4.485741388682e-01, 1.558573402061e-02, 7.1871e-01, 1.7170e-02, - 2DIAGNOSTIC, 16, -4.621057386884e-01, 1.534805578679e-02, 7.3711e-01, 1.8396e-02, - 2DIAGNOSTIC, 17, -4.684450404626e-01, 1.428484410919e-02, 7.5245e-01, 1.5340e-02, - 2DIAGNOSTIC, 18, -4.700280022231e-01, 1.230591774836e-02, 7.7448e-01, 2.2033e-02, - 2DIAGNOSTIC, 19, -4.704637358467e-01, 9.813419882806e-03, 7.8656e-01, 1.2075e-02, - 2DIAGNOSTIC, 20, -4.714639043716e-01, 7.625674635550e-03, 8.0289e-01, 1.6335e-02, - 2DIAGNOSTIC, 21, -4.717818429465e-01, 5.141518564823e-03, 8.1791e-01, 1.5018e-02, - 2DIAGNOSTIC, 22, -4.717824379565e-01, 2.989393151042e-03, 8.3123e-01, 1.3319e-02, - 2DIAGNOSTIC, 23, -4.718364042781e-01, 1.795089460294e-03, 8.4476e-01, 1.3533e-02, - 2DIAGNOSTIC, 24, -4.722438379208e-01, 1.046713171254e-03, 8.7851e-01, 3.3747e-02, - 2DIAGNOSTIC, 25, -4.723614168557e-01, 4.369003694390e-04, 8.9070e-01, 1.2189e-02, - 2DIAGNOSTIC, 26, -4.724116431516e-01, 2.006508204117e-04, 9.0866e-01, 1.7967e-02, - 2DIAGNOSTIC, 27, -4.724678132855e-01, 1.296280617482e-04, 9.2082e-01, 1.2159e-02, - 2DIAGNOSTIC, 28, -4.725105773574e-01, 9.249556149027e-05, 9.3288e-01, 1.2054e-02, - 2DIAGNOSTIC, 29, -4.726646488953e-01, 6.290600048955e-05, 9.4487e-01, 1.1991e-02, - 2DIAGNOSTIC, 30, -4.738976438851e-01, 8.022993114091e-05, 9.5993e-01, 1.5058e-02, - 2DIAGNOSTIC, 31, -4.741295722642e-01, 1.003032848938e-04, 9.7318e-01, 1.3258e-02, - 2DIAGNOSTIC, 32, -4.741749787496e-01, 1.108885037706e-04, 9.8791e-01, 1.4726e-02, - 2DIAGNOSTIC, 33, -4.741328851782e-01, 1.108413340384e-04, 1.0011e+00, 1.3166e-02, - 2DIAGNOSTIC, 34, -4.742517477254e-01, 1.107383653825e-04, 1.0160e+00, 1.4921e-02, - 2DIAGNOSTIC, 35, -4.742997959339e-01, 1.029351588933e-04, 1.0314e+00, 1.5368e-02, - 2DIAGNOSTIC, 36, -4.742597422641e-01, 8.599551617109e-05, 1.0447e+00, 1.3353e-02, - 2DIAGNOSTIC, 37, -4.742553532405e-01, 6.334938287352e-05, 1.0561e+00, 1.1355e-02, - 2DIAGNOSTIC, 38, -4.742541782886e-01, 3.708038029566e-05, 1.0679e+00, 1.1795e-02, - 2DIAGNOSTIC, 39, -4.742560840102e-01, 1.092188459862e-05, 1.0814e+00, 1.3499e-02, - 2DIAGNOSTIC, 40, -4.742632488063e-01, 5.572418566573e-06, 1.0929e+00, 1.1532e-02, - 2DIAGNOSTIC, 41, -4.742623009103e-01, 3.777162264525e-06, 1.1047e+00, 1.1815e-02, - 2DIAGNOSTIC, 42, -4.742665857406e-01, 2.633122297688e-06, 1.1204e+00, 1.5671e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.035854754531e-01, 1.797693134862e+308, 1.3069e+00, 1.8647e-01, - Elapsed time (stage 0): 1.3562e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.728030477685e-01, 1.797693134862e+308, 3.4094e-02, 3.4094e-02, - 2DIAGNOSTIC, 2, -8.745140233811e-01, 1.797693134862e+308, 3.5279e-02, 1.1849e-03, - 2DIAGNOSTIC, 3, -8.768671535174e-01, 1.797693134862e+308, 3.6388e-02, 1.1089e-03, - 2DIAGNOSTIC, 4, -8.861175916625e-01, 1.797693134862e+308, 3.7526e-02, 1.1382e-03, - 2DIAGNOSTIC, 5, -9.133523276434e-01, 1.797693134862e+308, 3.8663e-02, 1.1370e-03, - 2DIAGNOSTIC, 6, -9.727447471297e-01, 1.797693134862e+308, 3.9793e-02, 1.1299e-03, - 2DIAGNOSTIC, 7, -9.946230828269e-01, 1.797693134862e+308, 4.1110e-02, 1.3168e-03, - 2DIAGNOSTIC, 8, -1.048391361911e+00, 1.797693134862e+308, 4.2933e-02, 1.8229e-03, - 2DIAGNOSTIC, 9, -1.053282721777e+00, 1.797693134862e+308, 4.4949e-02, 2.0161e-03, - 2DIAGNOSTIC, 10, -1.056964096054e+00, 1.551591508624e-02, 4.6942e-02, 1.9939e-03, - 2DIAGNOSTIC, 11, -1.059455379969e+00, 1.410208630589e-02, 4.9106e-02, 2.1632e-03, - 2DIAGNOSTIC, 12, -1.064100643648e+00, 1.183504160778e-02, 5.1008e-02, 1.9019e-03, - 2DIAGNOSTIC, 13, -1.070309165025e+00, 9.072306047771e-03, 5.3754e-02, 2.7461e-03, - 2DIAGNOSTIC, 14, -1.072934566732e+00, 6.160637933297e-03, 5.5332e-02, 1.5781e-03, - 2DIAGNOSTIC, 15, -1.076529963679e+00, 3.686225785098e-03, 5.6664e-02, 1.3318e-03, - 2DIAGNOSTIC, 16, -1.077212346054e+00, 2.279444502774e-03, 5.8333e-02, 1.6692e-03, - 2DIAGNOSTIC, 17, -1.079939893620e+00, 1.227328461377e-03, 5.9753e-02, 1.4200e-03, - 2DIAGNOSTIC, 18, -1.082938757520e+00, 1.074438789363e-03, 6.2172e-02, 2.4190e-03, - 2DIAGNOSTIC, 19, -1.084020472329e+00, 9.262583057972e-04, 6.3702e-02, 1.5299e-03, - 2DIAGNOSTIC, 20, -1.083850138769e+00, 7.583377969099e-04, 6.5039e-02, 1.3371e-03, - 2DIAGNOSTIC, 21, -1.084516196089e+00, 5.793341847168e-04, 6.6405e-02, 1.3661e-03, - 2DIAGNOSTIC, 22, -1.085488734074e+00, 4.329534238414e-04, 6.7714e-02, 1.3089e-03, - 2DIAGNOSTIC, 23, -1.086974399480e+00, 3.513101455973e-04, 6.9028e-02, 1.3139e-03, - 2DIAGNOSTIC, 24, -1.089187333793e+00, 2.987828021590e-04, 7.0647e-02, 1.6191e-03, - 2DIAGNOSTIC, 25, -1.090147073118e+00, 2.734569195271e-04, 7.2159e-02, 1.5121e-03, - 2DIAGNOSTIC, 26, -1.089743137135e+00, 2.274460718047e-04, 7.4144e-02, 1.9851e-03, - 2DIAGNOSTIC, 27, -1.090952034714e+00, 2.034175901237e-04, 7.5498e-02, 1.3540e-03, - 2DIAGNOSTIC, 28, -1.091882410262e+00, 1.998398924161e-04, 7.6820e-02, 1.3220e-03, - 2DIAGNOSTIC, 29, -1.097242971190e+00, 2.382339849158e-04, 7.9077e-02, 2.2571e-03, - 2DIAGNOSTIC, 30, -1.097779098708e+00, 2.537101112074e-04, 8.0479e-02, 1.4019e-03, - 2DIAGNOSTIC, 31, -1.098993773159e+00, 2.615880398755e-04, 8.1822e-02, 1.3430e-03, - 2DIAGNOSTIC, 32, -1.099622620441e+00, 2.582348769676e-04, 8.3987e-02, 2.1651e-03, - 2DIAGNOSTIC, 33, -1.099857687319e+00, 2.441420996851e-04, 8.6350e-02, 2.3630e-03, - 2DIAGNOSTIC, 34, -1.099865265540e+00, 2.248966512893e-04, 8.7693e-02, 1.3430e-03, - 2DIAGNOSTIC, 35, -1.099905932212e+00, 1.934633325654e-04, 8.8976e-02, 1.2832e-03, - 2DIAGNOSTIC, 36, -1.099967912550e+00, 1.433202849320e-04, 9.0310e-02, 1.3340e-03, - 2DIAGNOSTIC, 37, -1.100047619040e+00, 9.210744301118e-05, 9.1663e-02, 1.3530e-03, - 2DIAGNOSTIC, 38, -1.100149672847e+00, 4.141300523237e-05, 9.2943e-02, 1.2801e-03, - 2DIAGNOSTIC, 39, -1.100270206113e+00, 2.752344862874e-05, 9.4308e-02, 1.3649e-03, - 2DIAGNOSTIC, 40, -1.100422030010e+00, 1.627962495616e-05, 9.5658e-02, 1.3499e-03, - 2DIAGNOSTIC, 41, -1.100692636363e+00, 1.376539406493e-05, 9.7210e-02, 1.5519e-03, - 2DIAGNOSTIC, 42, -1.100570849303e+00, 1.330913911520e-05, 9.8993e-02, 1.7829e-03, - 2DIAGNOSTIC, 43, -1.100888604375e+00, 1.518248111419e-05, 1.0026e-01, 1.2720e-03, - 2DIAGNOSTIC, 44, -1.102044490317e+00, 2.263446077154e-05, 1.0177e-01, 1.5090e-03, - 2DIAGNOSTIC, 45, -1.103058886924e+00, 3.373029056784e-05, 1.0309e-01, 1.3151e-03, - 2DIAGNOSTIC, 46, -1.103146901187e+00, 4.196372488344e-05, 1.0455e-01, 1.4579e-03, - 2DIAGNOSTIC, 47, -1.104385000057e+00, 5.355671047441e-05, 1.0605e-01, 1.5070e-03, - 2DIAGNOSTIC, 48, -1.104496455793e+00, 6.064374890790e-05, 1.1101e-01, 4.9520e-03, - 2DIAGNOSTIC, 49, -1.104496364626e+00, 6.226816422229e-05, 1.1231e-01, 1.3061e-03, - 2DIAGNOSTIC, 50, -1.104496498766e+00, 5.871363321883e-05, 1.1363e-01, 1.3139e-03, - 2DIAGNOSTIC, 51, -1.104496725549e+00, 5.125138589376e-05, 1.1496e-01, 1.3299e-03, - 2DIAGNOSTIC, 52, -1.104497108902e+00, 3.861143587356e-05, 1.1624e-01, 1.2851e-03, - 2DIAGNOSTIC, 53, -1.104497756766e+00, 2.429258321207e-05, 1.1756e-01, 1.3218e-03, - 2DIAGNOSTIC, 54, -1.104498851210e+00, 1.391440002763e-05, 1.1892e-01, 1.3549e-03, - 2DIAGNOSTIC, 55, -1.104500698797e+00, 7.633956955789e-06, 1.2024e-01, 1.3261e-03, - 2DIAGNOSTIC, 56, -1.104503814198e+00, 1.180047501045e-06, 1.2166e-01, 1.4169e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.256411030034e-01, 1.797693134862e+308, 1.6354e-01, 4.1879e-02, - 2DIAGNOSTIC, 2, -7.255652164272e-01, 1.797693134862e+308, 1.6635e-01, 2.8069e-03, - 2DIAGNOSTIC, 3, -7.265973027565e-01, 1.797693134862e+308, 1.6897e-01, 2.6269e-03, - 2DIAGNOSTIC, 4, -7.279849651236e-01, 1.797693134862e+308, 1.7151e-01, 2.5358e-03, - 2DIAGNOSTIC, 5, -7.302698046074e-01, 1.797693134862e+308, 1.7380e-01, 2.2891e-03, - 2DIAGNOSTIC, 6, -7.336114174073e-01, 1.797693134862e+308, 1.7652e-01, 2.7258e-03, - 2DIAGNOSTIC, 7, -7.422969461345e-01, 1.797693134862e+308, 1.7968e-01, 3.1581e-03, - 2DIAGNOSTIC, 8, -7.435549207010e-01, 1.797693134862e+308, 1.8253e-01, 2.8470e-03, - 2DIAGNOSTIC, 9, -7.444261668440e-01, 1.797693134862e+308, 1.8582e-01, 3.2921e-03, - 2DIAGNOSTIC, 10, -7.453960361512e-01, 2.145643471107e-03, 1.8910e-01, 3.2802e-03, - 2DIAGNOSTIC, 11, -7.458720571109e-01, 1.966798574785e-03, 1.9208e-01, 2.9809e-03, - 2DIAGNOSTIC, 12, -7.463828081526e-01, 1.652062211600e-03, 1.9461e-01, 2.5270e-03, - 2DIAGNOSTIC, 13, -7.472825435444e-01, 1.294506823487e-03, 1.9775e-01, 3.1409e-03, - 2DIAGNOSTIC, 14, -7.476835426749e-01, 9.228407036023e-04, 2.0226e-01, 4.5090e-03, - 2DIAGNOSTIC, 15, -7.477449538533e-01, 5.779476483330e-04, 2.0480e-01, 2.5411e-03, - 2DIAGNOSTIC, 16, -7.478034423052e-01, 3.004173727046e-04, 2.0734e-01, 2.5439e-03, - 2DIAGNOSTIC, 17, -7.478901064489e-01, 2.262804163116e-04, 2.0988e-01, 2.5320e-03, - 2DIAGNOSTIC, 18, -7.479965872011e-01, 1.683219851473e-04, 2.1246e-01, 2.5852e-03, - 2DIAGNOSTIC, 19, -7.480833075124e-01, 1.199399449961e-04, 2.1496e-01, 2.4991e-03, - 2DIAGNOSTIC, 20, -7.481373647541e-01, 8.518420344009e-05, 2.1751e-01, 2.5511e-03, - 2DIAGNOSTIC, 21, -7.481752498064e-01, 5.541235323402e-05, 2.2054e-01, 3.0301e-03, - 2DIAGNOSTIC, 22, -7.484328021460e-01, 3.635676923069e-05, 2.2360e-01, 3.0620e-03, - 2DIAGNOSTIC, 23, -7.489351216672e-01, 3.875308463949e-05, 2.2658e-01, 2.9750e-03, - 2DIAGNOSTIC, 24, -7.488958054878e-01, 4.302058614351e-05, 2.2974e-01, 3.1610e-03, - 2DIAGNOSTIC, 25, -7.489031923192e-01, 4.425411503715e-05, 2.3286e-01, 3.1250e-03, - 2DIAGNOSTIC, 26, -7.488675923586e-01, 4.177555767644e-05, 2.3576e-01, 2.8970e-03, - 2DIAGNOSTIC, 27, -7.487771663186e-01, 3.551164281545e-05, 2.3860e-01, 2.8369e-03, - 2DIAGNOSTIC, 28, -7.487327100703e-01, 2.719663164189e-05, 2.4115e-01, 2.5511e-03, - 2DIAGNOSTIC, 29, -7.486407237406e-01, 1.694928672707e-05, 2.4368e-01, 2.5260e-03, - 2DIAGNOSTIC, 30, -7.486558093844e-01, 6.912882026124e-06, 2.4653e-01, 2.8551e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.817456926420e-01, 1.797693134862e+308, 3.1408e-01, 6.7548e-02, - 2DIAGNOSTIC, 2, -5.819904193370e-01, 1.797693134862e+308, 3.2901e-01, 1.4932e-02, - 2DIAGNOSTIC, 3, -5.823484848942e-01, 1.797693134862e+308, 3.4231e-01, 1.3304e-02, - 2DIAGNOSTIC, 4, -5.829296502627e-01, 1.797693134862e+308, 3.5499e-01, 1.2672e-02, - 2DIAGNOSTIC, 5, -5.835914462817e-01, 1.797693134862e+308, 3.6781e-01, 1.2824e-02, - 2DIAGNOSTIC, 6, -5.840501755953e-01, 1.797693134862e+308, 3.8021e-01, 1.2399e-02, - 2DIAGNOSTIC, 7, -5.853221105766e-01, 1.797693134862e+308, 3.9750e-01, 1.7289e-02, - 2DIAGNOSTIC, 8, -5.857288653539e-01, 1.797693134862e+308, 4.1140e-01, 1.3900e-02, - 2DIAGNOSTIC, 9, -5.858700570821e-01, 1.797693134862e+308, 4.2359e-01, 1.2187e-02, - 2DIAGNOSTIC, 10, -5.863474412137e-01, 5.656282671107e-04, 4.3654e-01, 1.2953e-02, - 2DIAGNOSTIC, 11, -5.877854829187e-01, 5.582960380698e-04, 4.4920e-01, 1.2664e-02, - 2DIAGNOSTIC, 12, -5.892628979474e-01, 5.700271525729e-04, 4.6184e-01, 1.2643e-02, - 2DIAGNOSTIC, 13, -5.900525826165e-01, 5.704283180133e-04, 4.7965e-01, 1.7803e-02, - 2DIAGNOSTIC, 14, -5.907010070024e-01, 5.625038528020e-04, 4.9563e-01, 1.5979e-02, - 2DIAGNOSTIC, 15, -5.910030219000e-01, 5.359991722145e-04, 5.0801e-01, 1.2382e-02, - 2DIAGNOSTIC, 16, -5.926255419478e-01, 5.253949275368e-04, 5.2641e-01, 1.8406e-02, - 2DIAGNOSTIC, 17, -5.931200877571e-01, 5.162790631246e-04, 5.3924e-01, 1.2830e-02, - 2DIAGNOSTIC, 18, -5.935792390570e-01, 4.843428560804e-04, 5.5282e-01, 1.3580e-02, - 2DIAGNOSTIC, 19, -5.938957227164e-01, 4.235677463067e-04, 5.7371e-01, 2.0881e-02, - 2DIAGNOSTIC, 20, -5.939233256862e-01, 3.414846501447e-04, 5.9030e-01, 1.6589e-02, - 2DIAGNOSTIC, 21, -5.939308767791e-01, 2.679484123240e-04, 6.0460e-01, 1.4305e-02, - 2DIAGNOSTIC, 22, -5.939353358690e-01, 2.083779026511e-04, 6.2096e-01, 1.6363e-02, - 2DIAGNOSTIC, 23, -5.939386692643e-01, 1.513549313834e-04, 6.3732e-01, 1.6354e-02, - 2DIAGNOSTIC, 24, -5.939434653822e-01, 9.844970017318e-05, 6.5389e-01, 1.6577e-02, - 2DIAGNOSTIC, 25, -5.939465773551e-01, 4.591388329485e-05, 6.7264e-01, 1.8750e-02, - 2DIAGNOSTIC, 26, -5.939474200422e-01, 2.330353521038e-05, 6.8895e-01, 1.6304e-02, - 2DIAGNOSTIC, 27, -5.939459494550e-01, 8.949525892525e-06, 7.0211e-01, 1.3164e-02, - 2DIAGNOSTIC, 28, -5.939320816295e-01, 2.414800074367e-06, 7.1627e-01, 1.4154e-02, - 2DIAGNOSTIC, 29, -5.939359081615e-01, 1.531683763698e-06, 7.3118e-01, 1.4918e-02, - 2DIAGNOSTIC, 30, -5.939382373015e-01, 1.140493298808e-06, 7.4572e-01, 1.4535e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.989191403708e-01, 1.797693134862e+308, 9.5478e-01, 2.0906e-01, - Elapsed time (stage 1): 9.7824e-01 - - -Total elapsed time: 2.3353e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:28:16 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 31 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 51 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 90.72% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 90.72% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[17529 15903 7255 0 996 0 430 248 1786 1231 1785 0 - 407 744 0 0 0 0 0 0 0 0 0 0 - 0 0 0 0 0 0 0] -[226717 70111 17171 5024 11141 6169 1683 1032 1506 1680 - 8652 1223 1334 1540 594 889 878 1220 252 282 - 215 0 202 0 0 0 0 0 0 0 - 0] -[ 235 16141 0 0 7377 0 0 0 650 0 6130 0 - 4864 0 0 0 0 0 0 9433 0 0 0 13636 - 0 0 0 223 0 0 11631] -[ 631 228017 512 204 629 3385 725 7139 9986 459 - 0 0 961 0 3132 195 0 0 887 838 - 0 271 231 51884 401 338 624 0 0 1767 - 0] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:37:59 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:38:06 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:41:57 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:41:57 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:41:57 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:42:07 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:42:14 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC006 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:43:47 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:44:15 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:47:41 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:47:42 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:49:03 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:49:03 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x56531f277d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [81.9449, 113.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56531f0ee730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc98b347010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x56531f27b020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.01, 53.028, -110.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56531f2810c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc987c88010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x56531f291840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [81.9449, 113.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56531f27d890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc982880010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x56531f2953e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.01, 53.028, -110.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56531f284130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc97f1c1010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.400493936875e-01, 1.797693134862e+308, 3.9741e-01, 3.9741e-01, - 2DIAGNOSTIC, 2, -3.424556266743e-01, 1.797693134862e+308, 3.9898e-01, 1.5652e-03, - 2DIAGNOSTIC, 3, -3.467944016225e-01, 1.797693134862e+308, 4.0047e-01, 1.4911e-03, - 2DIAGNOSTIC, 4, -3.503819022696e-01, 1.797693134862e+308, 4.0198e-01, 1.5130e-03, - 2DIAGNOSTIC, 5, -3.530353081748e-01, 1.797693134862e+308, 4.0429e-01, 2.3069e-03, - 2DIAGNOSTIC, 6, -3.575842587406e-01, 1.797693134862e+308, 4.0626e-01, 1.9720e-03, - 2DIAGNOSTIC, 7, -3.747990028068e-01, 1.797693134862e+308, 4.0838e-01, 2.1210e-03, - 2DIAGNOSTIC, 8, -3.811886893153e-01, 1.797693134862e+308, 4.1010e-01, 1.7211e-03, - 2DIAGNOSTIC, 9, -3.913674656148e-01, 1.797693134862e+308, 4.1185e-01, 1.7500e-03, - 2DIAGNOSTIC, 10, -3.974248158475e-01, 1.066789791117e-02, 4.1485e-01, 2.9941e-03, - 2DIAGNOSTIC, 11, -4.742673665747e-01, 1.527410186598e-02, 4.1805e-01, 3.1991e-03, - 2DIAGNOSTIC, 12, -4.745983706333e-01, 1.761203959566e-02, 4.2070e-01, 2.6529e-03, - 2DIAGNOSTIC, 13, -4.752036740719e-01, 1.827140093025e-02, 4.2275e-01, 2.0559e-03, - 2DIAGNOSTIC, 14, -4.754662817507e-01, 1.744665890339e-02, 4.2482e-01, 2.0659e-03, - 2DIAGNOSTIC, 15, -4.753483643136e-01, 1.528979937406e-02, 4.2680e-01, 1.9779e-03, - 2DIAGNOSTIC, 16, -4.752011915461e-01, 1.218846271263e-02, 4.2848e-01, 1.6861e-03, - 2DIAGNOSTIC, 17, -4.750659411898e-01, 9.087297354199e-03, 4.3018e-01, 1.6949e-03, - 2DIAGNOSTIC, 18, -4.751639528846e-01, 5.837521067925e-03, 4.3184e-01, 1.6642e-03, - 2DIAGNOSTIC, 19, -4.752004079766e-01, 2.835412316720e-03, 4.3352e-01, 1.6720e-03, - 2DIAGNOSTIC, 20, -4.752157395330e-01, 4.366576788447e-05, 4.3656e-01, 3.0432e-03, - 2DIAGNOSTIC, 21, -4.752185293676e-01, 1.246850795016e-05, 4.3848e-01, 1.9259e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.523008386820e-01, 1.797693134862e+308, 6.9884e-01, 2.6036e-01, - 2DIAGNOSTIC, 2, -3.546203356998e-01, 1.797693134862e+308, 7.0124e-01, 2.3959e-03, - 2DIAGNOSTIC, 3, -3.584541144656e-01, 1.797693134862e+308, 7.0362e-01, 2.3801e-03, - 2DIAGNOSTIC, 4, -3.616756505487e-01, 1.797693134862e+308, 7.0639e-01, 2.7740e-03, - 2DIAGNOSTIC, 5, -3.645118701960e-01, 1.797693134862e+308, 7.0888e-01, 2.4900e-03, - 2DIAGNOSTIC, 6, -3.674021370142e-01, 1.797693134862e+308, 7.1139e-01, 2.5110e-03, - 2DIAGNOSTIC, 7, -3.688897780380e-01, 1.797693134862e+308, 7.1390e-01, 2.5079e-03, - 2DIAGNOSTIC, 8, -3.789638061047e-01, 1.797693134862e+308, 7.1636e-01, 2.4590e-03, - 2DIAGNOSTIC, 9, -4.173105045068e-01, 1.797693134862e+308, 7.1860e-01, 2.2449e-03, - 2DIAGNOSTIC, 10, -4.611771401697e-01, 1.365939106093e-02, 7.2203e-01, 3.4230e-03, - 2DIAGNOSTIC, 11, -4.630851293150e-01, 1.634332432760e-02, 7.2474e-01, 2.7108e-03, - 2DIAGNOSTIC, 12, -4.644001329054e-01, 1.733317428472e-02, 7.2809e-01, 3.3500e-03, - 2DIAGNOSTIC, 13, -4.645111920094e-01, 1.683882248925e-02, 7.3070e-01, 2.6159e-03, - 2DIAGNOSTIC, 14, -4.654096907178e-01, 1.507806597318e-02, 7.3396e-01, 3.2589e-03, - 2DIAGNOSTIC, 15, -4.663097870920e-01, 1.235843104018e-02, 7.3621e-01, 2.2490e-03, - 2DIAGNOSTIC, 16, -4.672359150913e-01, 9.086461522723e-03, 7.3849e-01, 2.2781e-03, - 2DIAGNOSTIC, 17, -4.681030116727e-01, 5.547920268923e-03, 7.4108e-01, 2.5911e-03, - 2DIAGNOSTIC, 18, -4.685995843009e-01, 2.320674884035e-03, 7.4403e-01, 2.9480e-03, - 2DIAGNOSTIC, 19, -4.691681618719e-01, 6.010651466442e-04, 7.4633e-01, 2.3029e-03, - 2DIAGNOSTIC, 20, -4.702014319425e-01, 5.250496433264e-04, 7.4892e-01, 2.5871e-03, - 2DIAGNOSTIC, 21, -4.720424006734e-01, 5.259966291832e-04, 7.5185e-01, 2.9349e-03, - 2DIAGNOSTIC, 22, -4.724383586464e-01, 5.290021702730e-04, 7.5452e-01, 2.6619e-03, - 2DIAGNOSTIC, 23, -4.728639248980e-01, 4.984387230755e-04, 7.5681e-01, 2.2938e-03, - 2DIAGNOSTIC, 24, -4.732007252285e-01, 4.584021575727e-04, 7.6007e-01, 3.2592e-03, - 2DIAGNOSTIC, 25, -4.733468257973e-01, 4.057571135227e-04, 7.6266e-01, 2.5949e-03, - 2DIAGNOSTIC, 26, -4.737196675819e-01, 3.513336958658e-04, 7.6525e-01, 2.5890e-03, - 2DIAGNOSTIC, 27, -4.738377908642e-01, 2.920156768925e-04, 7.6754e-01, 2.2819e-03, - 2DIAGNOSTIC, 28, -4.739430953184e-01, 2.243886164954e-04, 7.7014e-01, 2.6021e-03, - 2DIAGNOSTIC, 29, -4.740470354601e-01, 1.557284193395e-04, 7.7277e-01, 2.6338e-03, - 2DIAGNOSTIC, 30, -4.743397820504e-01, 1.050191633672e-04, 7.7508e-01, 2.3069e-03, - 2DIAGNOSTIC, 31, -4.753374444389e-01, 1.067946376463e-04, 7.7868e-01, 3.5999e-03, - 2DIAGNOSTIC, 32, -4.757745795680e-01, 1.145444704165e-04, 7.8097e-01, 2.2900e-03, - 2DIAGNOSTIC, 33, -4.757097110665e-01, 1.180645144877e-04, 7.8326e-01, 2.2969e-03, - 2DIAGNOSTIC, 34, -4.759611197466e-01, 1.217747263847e-04, 7.8685e-01, 3.5830e-03, - 2DIAGNOSTIC, 35, -4.761422471901e-01, 1.194602594791e-04, 7.8947e-01, 2.6209e-03, - 2DIAGNOSTIC, 36, -4.762088478160e-01, 1.134115218504e-04, 7.9175e-01, 2.2771e-03, - 2DIAGNOSTIC, 37, -4.764453048926e-01, 1.030670337221e-04, 7.9434e-01, 2.5899e-03, - 2DIAGNOSTIC, 38, -4.764893279934e-01, 8.629398565776e-05, 7.9660e-01, 2.2609e-03, - 2DIAGNOSTIC, 39, -4.766343128437e-01, 6.650138499727e-05, 7.9921e-01, 2.6100e-03, - 2DIAGNOSTIC, 40, -4.770768945835e-01, 5.270346589768e-05, 8.0214e-01, 2.9318e-03, - 2DIAGNOSTIC, 41, -4.773533908404e-01, 5.399115324142e-05, 8.0473e-01, 2.5911e-03, - 2DIAGNOSTIC, 42, -4.774220188683e-01, 5.779724700875e-05, 8.0704e-01, 2.3100e-03, - 2DIAGNOSTIC, 43, -4.774403440671e-01, 5.533174827266e-05, 8.0930e-01, 2.2600e-03, - 2DIAGNOSTIC, 44, -4.777665313011e-01, 5.604308631387e-05, 8.1222e-01, 2.9180e-03, - 2DIAGNOSTIC, 45, -4.778433757306e-01, 5.483119723508e-05, 8.1450e-01, 2.2831e-03, - 2DIAGNOSTIC, 46, -4.779813444976e-01, 5.118388073970e-05, 8.1683e-01, 2.3298e-03, - 2DIAGNOSTIC, 47, -4.781881867460e-01, 4.889598711998e-05, 8.1944e-01, 2.6121e-03, - 2DIAGNOSTIC, 48, -4.791569993993e-01, 5.533050577427e-05, 8.2181e-01, 2.3651e-03, - 2DIAGNOSTIC, 49, -4.808955905301e-01, 7.983821593182e-05, 8.2445e-01, 2.6441e-03, - 2DIAGNOSTIC, 50, -4.856149024820e-01, 1.596731898776e-04, 8.2713e-01, 2.6731e-03, - 2DIAGNOSTIC, 51, -4.876362699641e-01, 2.478412810555e-04, 8.3014e-01, 3.0150e-03, - 2DIAGNOSTIC, 52, -4.871265133670e-01, 3.037143902018e-04, 8.3281e-01, 2.6710e-03, - 2DIAGNOSTIC, 53, -4.870745301050e-01, 3.289060974947e-04, 8.3548e-01, 2.6729e-03, - 2DIAGNOSTIC, 54, -4.871108685603e-01, 3.255751260116e-04, 8.3781e-01, 2.3232e-03, - 2DIAGNOSTIC, 55, -4.870645030564e-01, 2.905389104295e-04, 8.4046e-01, 2.6510e-03, - 2DIAGNOSTIC, 56, -4.870682806480e-01, 2.304170801319e-04, 8.4282e-01, 2.3580e-03, - 2DIAGNOSTIC, 57, -4.870760309743e-01, 1.535817154355e-04, 8.4515e-01, 2.3370e-03, - 2DIAGNOSTIC, 58, -4.871127745374e-01, 7.604074533461e-05, 8.4789e-01, 2.7339e-03, - 2DIAGNOSTIC, 59, -4.869041740658e-01, 8.807507830572e-06, 8.5062e-01, 2.7301e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.787478435832e-01, 1.797693134862e+308, 1.1091e+00, 2.5853e-01, - 2DIAGNOSTIC, 2, -3.790862893989e-01, 1.797693134862e+308, 1.1212e+00, 1.2065e-02, - 2DIAGNOSTIC, 3, -3.796673350558e-01, 1.797693134862e+308, 1.1367e+00, 1.5492e-02, - 2DIAGNOSTIC, 4, -3.797745544802e-01, 1.797693134862e+308, 1.1503e+00, 1.3579e-02, - 2DIAGNOSTIC, 5, -3.797976888051e-01, 1.797693134862e+308, 1.1652e+00, 1.4951e-02, - 2DIAGNOSTIC, 6, -3.797644397902e-01, 1.797693134862e+308, 1.1780e+00, 1.2765e-02, - 2DIAGNOSTIC, 7, -3.798064441742e-01, 1.797693134862e+308, 1.1906e+00, 1.2573e-02, - 2DIAGNOSTIC, 8, -3.799874179875e-01, 1.797693134862e+308, 1.2045e+00, 1.3906e-02, - 2DIAGNOSTIC, 9, -3.805598444275e-01, 1.797693134862e+308, 1.2169e+00, 1.2436e-02, - 2DIAGNOSTIC, 10, -3.823908375150e-01, 3.894690631632e-04, 1.2324e+00, 1.5493e-02, - 2DIAGNOSTIC, 11, -3.846276716842e-01, 5.848191563401e-04, 1.2486e+00, 1.6175e-02, - 2DIAGNOSTIC, 12, -3.859681056857e-01, 7.963115553096e-04, 1.2627e+00, 1.4075e-02, - 2DIAGNOSTIC, 13, -3.862388397479e-01, 9.526305195796e-04, 1.2751e+00, 1.2415e-02, - 2DIAGNOSTIC, 14, -3.873478614188e-01, 1.066052158151e-03, 1.2886e+00, 1.3496e-02, - 2DIAGNOSTIC, 15, -3.921358255767e-01, 1.302446584742e-03, 1.3011e+00, 1.2531e-02, - 2DIAGNOSTIC, 16, -4.223265869442e-01, 2.767160648631e-03, 1.3133e+00, 1.2158e-02, - 2DIAGNOSTIC, 17, -4.317828192150e-01, 4.160951751771e-03, 1.3254e+00, 1.2150e-02, - 2DIAGNOSTIC, 18, -4.484303610204e-01, 5.677268412602e-03, 1.3466e+00, 2.1198e-02, - 2DIAGNOSTIC, 19, -4.531220575072e-01, 6.689051966307e-03, 1.3585e+00, 1.1872e-02, - 2DIAGNOSTIC, 20, -4.555848397374e-01, 7.119234919704e-03, 1.3708e+00, 1.2313e-02, - 2DIAGNOSTIC, 21, -4.628841079406e-01, 7.149740555109e-03, 1.3849e+00, 1.4107e-02, - 2DIAGNOSTIC, 22, -4.708486258979e-01, 6.794933242101e-03, 1.3968e+00, 1.1955e-02, - 2DIAGNOSTIC, 23, -4.775497921947e-01, 6.054935139948e-03, 1.4109e+00, 1.4065e-02, - 2DIAGNOSTIC, 24, -4.842829864583e-01, 5.053881323888e-03, 1.4321e+00, 2.1187e-02, - 2DIAGNOSTIC, 25, -4.866359022260e-01, 3.856228995929e-03, 1.4441e+00, 1.1949e-02, - 2DIAGNOSTIC, 26, -4.879658416342e-01, 3.233251126526e-03, 1.4560e+00, 1.1949e-02, - 2DIAGNOSTIC, 27, -4.913649703540e-01, 2.672189471189e-03, 1.4680e+00, 1.1979e-02, - 2DIAGNOSTIC, 28, -4.969968708475e-01, 2.438184945873e-03, 1.4822e+00, 1.4186e-02, - 2DIAGNOSTIC, 29, -5.014040043710e-01, 2.201476446557e-03, 1.4980e+00, 1.5870e-02, - 2DIAGNOSTIC, 30, -5.041253928629e-01, 1.889437014018e-03, 1.5102e+00, 1.2149e-02, - 2DIAGNOSTIC, 31, -5.136593971265e-01, 1.781022840801e-03, 1.5224e+00, 1.2256e-02, - 2DIAGNOSTIC, 32, -5.215513681905e-01, 1.830971190151e-03, 1.5368e+00, 1.4353e-02, - 2DIAGNOSTIC, 33, -5.259143266775e-01, 1.916475653313e-03, 1.5508e+00, 1.4035e-02, - 2DIAGNOSTIC, 34, -5.367000097978e-01, 2.148304631179e-03, 1.5629e+00, 1.2062e-02, - 2DIAGNOSTIC, 35, -5.396018439657e-01, 2.255148774703e-03, 1.5758e+00, 1.2880e-02, - 2DIAGNOSTIC, 36, -5.548363349740e-01, 2.433146172862e-03, 1.5944e+00, 1.8654e-02, - 2DIAGNOSTIC, 37, -5.619625731531e-01, 2.540713349146e-03, 1.6117e+00, 1.7256e-02, - 2DIAGNOSTIC, 38, -5.651907783197e-01, 2.546584871150e-03, 1.6261e+00, 1.4455e-02, - 2DIAGNOSTIC, 39, -5.671969111930e-01, 2.416951668347e-03, 1.6405e+00, 1.4343e-02, - 2DIAGNOSTIC, 40, -5.675419579865e-01, 2.111634226307e-03, 1.6534e+00, 1.2935e-02, - 2DIAGNOSTIC, 41, -5.681352647841e-01, 1.773859136926e-03, 1.6667e+00, 1.3266e-02, - 2DIAGNOSTIC, 42, -5.696724287844e-01, 1.423818094908e-03, 1.6798e+00, 1.3135e-02, - 2DIAGNOSTIC, 43, -5.709193151883e-01, 1.036221250930e-03, 1.7009e+00, 2.1071e-02, - 2DIAGNOSTIC, 44, -5.715265514895e-01, 7.315338753073e-04, 1.7163e+00, 1.5384e-02, - 2DIAGNOSTIC, 45, -5.715532205307e-01, 4.092982195936e-04, 1.7310e+00, 1.4779e-02, - 2DIAGNOSTIC, 46, -5.717094892709e-01, 2.652157419373e-04, 1.7464e+00, 1.5355e-02, - 2DIAGNOSTIC, 47, -5.718080710367e-01, 1.944321467596e-04, 1.7682e+00, 2.1761e-02, - 2DIAGNOSTIC, 48, -5.718618166706e-01, 1.486694350817e-04, 1.7839e+00, 1.5710e-02, - 2DIAGNOSTIC, 49, -5.719991068133e-01, 1.171754035799e-04, 1.8007e+00, 1.6798e-02, - 2DIAGNOSTIC, 50, -5.719254894202e-01, 7.948777035405e-05, 1.8183e+00, 1.7633e-02, - 2DIAGNOSTIC, 51, -5.719195460065e-01, 4.263099836635e-05, 1.8340e+00, 1.5731e-02, - 2DIAGNOSTIC, 52, -5.719141391226e-01, 2.045118293547e-05, 1.8483e+00, 1.4272e-02, - 2DIAGNOSTIC, 53, -5.719048107033e-01, 1.086909911704e-05, 1.8607e+00, 1.2388e-02, - 2DIAGNOSTIC, 54, -5.719089827383e-01, 7.354666906146e-06, 1.8750e+00, 1.4311e-02, - 2DIAGNOSTIC, 55, -5.719255272116e-01, 3.788857774457e-06, 1.8876e+00, 1.2640e-02, - 2DIAGNOSTIC, 56, -5.719308084120e-01, 1.747910328587e-06, 1.9005e+00, 1.2859e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.880905529133e-01, 1.797693134862e+308, 2.3670e+00, 4.6653e-01, - 2DIAGNOSTIC, 2, -4.882739657379e-01, 1.797693134862e+308, 2.4605e+00, 9.3467e-02, - 2DIAGNOSTIC, 3, -4.883281424802e-01, 1.797693134862e+308, 2.5513e+00, 9.0833e-02, - 2DIAGNOSTIC, 4, -4.883823869425e-01, 1.797693134862e+308, 2.6429e+00, 9.1607e-02, - 2DIAGNOSTIC, 5, -4.885602366512e-01, 1.797693134862e+308, 2.7627e+00, 1.1971e-01, - 2DIAGNOSTIC, 6, -4.886139437195e-01, 1.797693134862e+308, 2.8540e+00, 9.1307e-02, - 2DIAGNOSTIC, 7, -4.886432827316e-01, 1.797693134862e+308, 2.9653e+00, 1.1133e-01, - 2DIAGNOSTIC, 8, -4.886947295522e-01, 1.797693134862e+308, 3.1048e+00, 1.3946e-01, - 2DIAGNOSTIC, 9, -4.886987435958e-01, 1.797693134862e+308, 3.2003e+00, 9.5519e-02, - 2DIAGNOSTIC, 10, -4.887090029391e-01, 8.333000482885e-05, 3.2972e+00, 9.6891e-02, - 2DIAGNOSTIC, 11, -4.887231050858e-01, 5.956933828760e-05, 3.3927e+00, 9.5529e-02, - 2DIAGNOSTIC, 12, -4.887428148972e-01, 4.457926214582e-05, 3.5329e+00, 1.4025e-01, - 2DIAGNOSTIC, 13, -4.887510705989e-01, 3.091540620813e-05, 3.6596e+00, 1.2666e-01, - 2DIAGNOSTIC, 14, -4.887464268754e-01, 1.851166394867e-05, 3.7705e+00, 1.1086e-01, - 2DIAGNOSTIC, 15, -4.887483627462e-01, 1.325064658492e-05, 3.9109e+00, 1.4043e-01, - 2DIAGNOSTIC, 16, -4.887495023319e-01, 9.603351792925e-06, 4.2868e+00, 3.7586e-01, - 2DIAGNOSTIC, 17, -4.887495023284e-01, 6.627902911137e-06, 4.6678e+00, 3.8106e-01, - 2DIAGNOSTIC, 18, -4.887495023284e-01, 5.209140967202e-06, 4.7756e+00, 1.0776e-01, - 2DIAGNOSTIC, 19, -4.887495023284e-01, 3.751579808850e-06, 4.8965e+00, 1.2098e-01, - 2DIAGNOSTIC, 20, -4.887495023284e-01, 2.543688571402e-06, 5.0043e+00, 1.0780e-01, - 2DIAGNOSTIC, 21, -4.887495023284e-01, 1.736969337293e-06, 5.1127e+00, 1.0833e-01, - 2DIAGNOSTIC, 22, -4.887495023284e-01, 1.496968102872e-06, 5.2444e+00, 1.3171e-01, - 2DIAGNOSTIC, 23, -4.887495023284e-01, 1.486298851647e-06, 5.3705e+00, 1.2612e-01, - 2DIAGNOSTIC, 24, -4.887495023284e-01, 1.353317326133e-06, 5.5101e+00, 1.3955e-01, - 2DIAGNOSTIC, 25, -4.887495023284e-01, 1.272660950374e-06, 5.6329e+00, 1.2287e-01, - 2DIAGNOSTIC, 26, -4.887495023284e-01, 1.223702762697e-06, 5.7436e+00, 1.1065e-01, - 2DIAGNOSTIC, 27, -4.887495023284e-01, 1.178371727396e-06, 5.8660e+00, 1.2236e-01, - 2DIAGNOSTIC, 28, -4.887495023284e-01, 1.136279223296e-06, 5.9724e+00, 1.0643e-01, - 2DIAGNOSTIC, 29, -4.887495023284e-01, 1.097090169933e-06, 6.0764e+00, 1.0401e-01, - 2DIAGNOSTIC, 30, -4.887495023284e-01, 1.060514172049e-06, 6.1812e+00, 1.0479e-01, - 2DIAGNOSTIC, 31, -4.887495023284e-01, 1.026298310967e-06, 6.2852e+00, 1.0401e-01, - Elapsed time (stage 0): 6.4913e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.965988822128e-01, 1.797693134862e+308, 2.1920e-01, 2.1920e-01, - 2DIAGNOSTIC, 2, -7.987040465214e-01, 1.797693134862e+308, 2.2047e-01, 1.2729e-03, - 2DIAGNOSTIC, 3, -8.008072537049e-01, 1.797693134862e+308, 2.2174e-01, 1.2720e-03, - 2DIAGNOSTIC, 4, -8.053647523667e-01, 1.797693134862e+308, 2.2300e-01, 1.2631e-03, - 2DIAGNOSTIC, 5, -8.163706779787e-01, 1.797693134862e+308, 2.2428e-01, 1.2751e-03, - 2DIAGNOSTIC, 6, -8.295229890176e-01, 1.797693134862e+308, 2.2553e-01, 1.2531e-03, - 2DIAGNOSTIC, 7, -8.491808397406e-01, 1.797693134862e+308, 2.2679e-01, 1.2569e-03, - 2DIAGNOSTIC, 8, -8.771603087435e-01, 1.797693134862e+308, 2.2859e-01, 1.8020e-03, - 2DIAGNOSTIC, 9, -8.959523970131e-01, 1.797693134862e+308, 2.3264e-01, 4.0500e-03, - 2DIAGNOSTIC, 10, -8.960697829351e-01, 8.858788363313e-03, 2.3424e-01, 1.5969e-03, - 2DIAGNOSTIC, 11, -8.964127172138e-01, 8.476996232846e-03, 2.3599e-01, 1.7471e-03, - 2DIAGNOSTIC, 12, -8.967479353758e-01, 7.474473880146e-03, 2.3752e-01, 1.5299e-03, - 2DIAGNOSTIC, 13, -8.966755631654e-01, 6.004893772797e-03, 2.3930e-01, 1.7850e-03, - 2DIAGNOSTIC, 14, -8.973049416248e-01, 4.329971478211e-03, 2.4087e-01, 1.5709e-03, - 2DIAGNOSTIC, 15, -8.976925728444e-01, 2.752189795088e-03, 2.4267e-01, 1.8029e-03, - 2DIAGNOSTIC, 16, -8.990539788709e-01, 1.430321316070e-03, 2.4420e-01, 1.5240e-03, - 2DIAGNOSTIC, 17, -9.005420194109e-01, 5.380623920513e-04, 2.4575e-01, 1.5490e-03, - 2DIAGNOSTIC, 18, -9.036321959738e-01, 2.574000869274e-04, 2.4756e-01, 1.8082e-03, - 2DIAGNOSTIC, 19, -9.065216126023e-01, 3.573667912397e-04, 2.4910e-01, 1.5450e-03, - 2DIAGNOSTIC, 20, -9.081836573056e-01, 4.423149723712e-04, 2.5064e-01, 1.5349e-03, - 2DIAGNOSTIC, 21, -9.159337241719e-01, 6.035633685443e-04, 2.5218e-01, 1.5471e-03, - 2DIAGNOSTIC, 22, -9.306223724502e-01, 9.123646019733e-04, 2.5373e-01, 1.5500e-03, - 2DIAGNOSTIC, 23, -9.408299876152e-01, 1.244935842762e-03, 2.5547e-01, 1.7352e-03, - 2DIAGNOSTIC, 24, -9.540368433903e-01, 1.616670894258e-03, 2.5838e-01, 2.9171e-03, - 2DIAGNOSTIC, 25, -9.537562721944e-01, 1.805798892749e-03, 2.5985e-01, 1.4679e-03, - 2DIAGNOSTIC, 26, -9.544163461020e-01, 1.837231324103e-03, 2.6161e-01, 1.7560e-03, - 2DIAGNOSTIC, 27, -9.554986576876e-01, 1.722358555440e-03, 2.6317e-01, 1.5650e-03, - 2DIAGNOSTIC, 28, -9.561021216733e-01, 1.493719844078e-03, 2.6475e-01, 1.5719e-03, - 2DIAGNOSTIC, 29, -9.575102567767e-01, 1.188842697609e-03, 2.6649e-01, 1.7490e-03, - 2DIAGNOSTIC, 30, -9.593405868448e-01, 8.312231792447e-04, 2.6803e-01, 1.5380e-03, - 2DIAGNOSTIC, 31, -9.599137595587e-01, 5.036977166966e-04, 2.6966e-01, 1.6310e-03, - 2DIAGNOSTIC, 32, -9.613022678369e-01, 3.080264859208e-04, 2.7187e-01, 2.2020e-03, - 2DIAGNOSTIC, 33, -9.625054833793e-01, 2.012677915373e-04, 2.7344e-01, 1.5700e-03, - 2DIAGNOSTIC, 34, -9.638357251044e-01, 2.167637242381e-04, 2.7494e-01, 1.5039e-03, - 2DIAGNOSTIC, 35, -9.650845523420e-01, 2.192201513740e-04, 2.7691e-01, 1.9670e-03, - 2DIAGNOSTIC, 36, -9.658144380452e-01, 2.127207991129e-04, 2.7864e-01, 1.7331e-03, - 2DIAGNOSTIC, 37, -9.641191314851e-01, 1.814279345815e-04, 2.8041e-01, 1.7719e-03, - 2DIAGNOSTIC, 38, -9.642596797908e-01, 1.411497264606e-04, 2.8302e-01, 2.6050e-03, - 2DIAGNOSTIC, 39, -9.650889531996e-01, 1.070748681490e-04, 2.8536e-01, 2.3398e-03, - 2DIAGNOSTIC, 40, -9.657696994624e-01, 8.379227296880e-05, 2.8717e-01, 1.8170e-03, - 2DIAGNOSTIC, 41, -9.655874240961e-01, 5.661020887087e-05, 2.8950e-01, 2.3232e-03, - 2DIAGNOSTIC, 42, -9.657165991635e-01, 3.710338867530e-05, 2.9160e-01, 2.1050e-03, - 2DIAGNOSTIC, 43, -9.658127205153e-01, 2.442955490533e-05, 2.9369e-01, 2.0890e-03, - 2DIAGNOSTIC, 44, -9.652153613728e-01, 1.473276955440e-05, 2.9529e-01, 1.6041e-03, - 2DIAGNOSTIC, 45, -9.639048386716e-01, 3.505837119465e-06, 2.9675e-01, 1.4539e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.131147535899e-01, 1.797693134862e+308, 5.2145e-01, 2.2470e-01, - 2DIAGNOSTIC, 2, -8.150510218186e-01, 1.797693134862e+308, 5.2354e-01, 2.0940e-03, - 2DIAGNOSTIC, 3, -8.178469053571e-01, 1.797693134862e+308, 5.2570e-01, 2.1570e-03, - 2DIAGNOSTIC, 4, -8.208253989515e-01, 1.797693134862e+308, 5.2776e-01, 2.0590e-03, - 2DIAGNOSTIC, 5, -8.243486210292e-01, 1.797693134862e+308, 5.2986e-01, 2.0988e-03, - 2DIAGNOSTIC, 6, -8.266926943886e-01, 1.797693134862e+308, 5.3184e-01, 1.9879e-03, - 2DIAGNOSTIC, 7, -8.283033502235e-01, 1.797693134862e+308, 5.3454e-01, 2.6991e-03, - 2DIAGNOSTIC, 8, -8.294573720206e-01, 1.797693134862e+308, 5.3663e-01, 2.0871e-03, - 2DIAGNOSTIC, 9, -8.300396525240e-01, 1.797693134862e+308, 5.3907e-01, 2.4340e-03, - 2DIAGNOSTIC, 10, -8.301852133823e-01, 1.459279269997e-03, 5.4230e-01, 3.2308e-03, - 2DIAGNOSTIC, 11, -8.310194253279e-01, 1.127211123820e-03, 5.4490e-01, 2.6081e-03, - 2DIAGNOSTIC, 12, -8.315494311789e-01, 8.197944830061e-04, 5.4722e-01, 2.3201e-03, - 2DIAGNOSTIC, 13, -8.319365345021e-01, 5.696502078852e-04, 5.4989e-01, 2.6610e-03, - 2DIAGNOSTIC, 14, -8.319125099192e-01, 3.753535856851e-04, 5.5223e-01, 2.3489e-03, - 2DIAGNOSTIC, 15, -8.326292894829e-01, 2.697860727611e-04, 5.5490e-01, 2.6631e-03, - 2DIAGNOSTIC, 16, -8.339263664351e-01, 2.300299529797e-04, 5.5850e-01, 3.6070e-03, - 2DIAGNOSTIC, 17, -8.340676926876e-01, 2.080770449338e-04, 5.6116e-01, 2.6550e-03, - 2DIAGNOSTIC, 18, -8.346102365100e-01, 2.021603115136e-04, 5.6378e-01, 2.6190e-03, - 2DIAGNOSTIC, 19, -8.347041137480e-01, 1.908520934089e-04, 5.6644e-01, 2.6641e-03, - 2DIAGNOSTIC, 20, -8.346870759833e-01, 1.649408520783e-04, 5.6914e-01, 2.7010e-03, - 2DIAGNOSTIC, 21, -8.345896425792e-01, 1.379213845580e-04, 5.7187e-01, 2.7270e-03, - 2DIAGNOSTIC, 22, -8.343086311512e-01, 1.044501619977e-04, 5.7424e-01, 2.3711e-03, - 2DIAGNOSTIC, 23, -8.345311877523e-01, 7.376196914086e-05, 5.7661e-01, 2.3699e-03, - 2DIAGNOSTIC, 24, -8.347720848278e-01, 4.171090541335e-05, 5.7905e-01, 2.4371e-03, - 2DIAGNOSTIC, 25, -8.350267127782e-01, 2.127926963165e-05, 5.8195e-01, 2.8992e-03, - 2DIAGNOSTIC, 26, -8.351085989292e-01, 1.879318088108e-05, 5.8467e-01, 2.7211e-03, - 2DIAGNOSTIC, 27, -8.351817829376e-01, 1.748547918627e-05, 5.8732e-01, 2.6560e-03, - 2DIAGNOSTIC, 28, -8.352400792743e-01, 2.201894747396e-05, 5.9218e-01, 4.8542e-03, - 2DIAGNOSTIC, 29, -8.352403239151e-01, 2.525274821994e-05, 5.9448e-01, 2.2991e-03, - 2DIAGNOSTIC, 30, -8.352409667437e-01, 2.579306021112e-05, 5.9703e-01, 2.5561e-03, - 2DIAGNOSTIC, 31, -8.352419842959e-01, 2.303740309331e-05, 5.9964e-01, 2.6050e-03, - 2DIAGNOSTIC, 32, -8.352435639751e-01, 1.537109758228e-05, 6.0225e-01, 2.6062e-03, - 2DIAGNOSTIC, 33, -8.352459805532e-01, 9.101327258426e-06, 6.0474e-01, 2.4979e-03, - 2DIAGNOSTIC, 34, -8.352498233795e-01, 4.837720402183e-06, 6.0729e-01, 2.5430e-03, - 2DIAGNOSTIC, 35, -8.352552726794e-01, 2.983678545062e-06, 6.0975e-01, 2.4650e-03, - 2DIAGNOSTIC, 36, -8.352616419594e-01, 1.860255459118e-06, 6.1255e-01, 2.8031e-03, - 2DIAGNOSTIC, 37, -8.352660768316e-01, 1.406211021734e-06, 6.1503e-01, 2.4750e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.908762800223e-01, 1.797693134862e+308, 8.6818e-01, 2.5315e-01, - 2DIAGNOSTIC, 2, -6.926185453307e-01, 1.797693134862e+308, 8.8187e-01, 1.3685e-02, - 2DIAGNOSTIC, 3, -6.946791311061e-01, 1.797693134862e+308, 8.9521e-01, 1.3341e-02, - 2DIAGNOSTIC, 4, -6.968703946801e-01, 1.797693134862e+308, 9.0898e-01, 1.3770e-02, - 2DIAGNOSTIC, 5, -6.991067191559e-01, 1.797693134862e+308, 9.2246e-01, 1.3483e-02, - 2DIAGNOSTIC, 6, -7.009875482149e-01, 1.797693134862e+308, 9.3572e-01, 1.3259e-02, - 2DIAGNOSTIC, 7, -7.027679731136e-01, 1.797693134862e+308, 9.5162e-01, 1.5898e-02, - 2DIAGNOSTIC, 8, -7.044548243501e-01, 1.797693134862e+308, 9.7371e-01, 2.2099e-02, - 2DIAGNOSTIC, 9, -7.046201855378e-01, 1.797693134862e+308, 9.9045e-01, 1.6734e-02, - 2DIAGNOSTIC, 10, -7.052605367674e-01, 1.417548682105e-03, 1.0040e+00, 1.3553e-02, - 2DIAGNOSTIC, 11, -7.056421100079e-01, 1.128959923739e-03, 1.0176e+00, 1.3593e-02, - 2DIAGNOSTIC, 12, -7.061375211335e-01, 8.622103290481e-04, 1.0331e+00, 1.5527e-02, - 2DIAGNOSTIC, 13, -7.064080042296e-01, 6.307059686500e-04, 1.0485e+00, 1.5424e-02, - 2DIAGNOSTIC, 14, -7.063749794566e-01, 4.374100687443e-04, 1.0623e+00, 1.3745e-02, - 2DIAGNOSTIC, 15, -7.066191371085e-01, 2.971959387843e-04, 1.0777e+00, 1.5375e-02, - 2DIAGNOSTIC, 16, -7.067451886263e-01, 1.973139484677e-04, 1.0948e+00, 1.7095e-02, - 2DIAGNOSTIC, 17, -7.067630850743e-01, 1.329608852189e-04, 1.1086e+00, 1.3820e-02, - 2DIAGNOSTIC, 18, -7.069362960925e-01, 1.056845964817e-04, 1.1239e+00, 1.5358e-02, - 2DIAGNOSTIC, 19, -7.071827367858e-01, 8.022864135594e-05, 1.1435e+00, 1.9513e-02, - 2DIAGNOSTIC, 20, -7.072194398916e-01, 6.352896499505e-05, 1.1589e+00, 1.5472e-02, - 2DIAGNOSTIC, 21, -7.072512951945e-01, 5.042950565718e-05, 1.1744e+00, 1.5516e-02, - 2DIAGNOSTIC, 22, -7.072607033907e-01, 4.319746531208e-05, 1.1901e+00, 1.5665e-02, - 2DIAGNOSTIC, 23, -7.072656715225e-01, 3.757961825057e-05, 1.2062e+00, 1.6133e-02, - 2DIAGNOSTIC, 24, -7.072428748181e-01, 2.793899175952e-05, 1.2195e+00, 1.3306e-02, - 2DIAGNOSTIC, 25, -7.071905144744e-01, 1.965152840984e-05, 1.2373e+00, 1.7714e-02, - 2DIAGNOSTIC, 26, -7.071785879316e-01, 1.214520951207e-05, 1.2506e+00, 1.3322e-02, - 2DIAGNOSTIC, 27, -7.071526783557e-01, 4.014361703171e-06, 1.2643e+00, 1.3743e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.871785911880e-01, 1.797693134862e+308, 1.7298e+00, 4.6546e-01, - 2DIAGNOSTIC, 2, -5.875885600527e-01, 1.797693134862e+308, 1.8364e+00, 1.0657e-01, - 2DIAGNOSTIC, 3, -5.879460462546e-01, 1.797693134862e+308, 1.9493e+00, 1.1298e-01, - 2DIAGNOSTIC, 4, -5.881887192194e-01, 1.797693134862e+308, 2.0616e+00, 1.1230e-01, - 2DIAGNOSTIC, 5, -5.883325139490e-01, 1.797693134862e+308, 2.1706e+00, 1.0895e-01, - 2DIAGNOSTIC, 6, -5.885337433970e-01, 1.797693134862e+308, 2.3232e+00, 1.5261e-01, - 2DIAGNOSTIC, 7, -5.886009401084e-01, 1.797693134862e+308, 2.4566e+00, 1.3345e-01, - 2DIAGNOSTIC, 8, -5.886771970981e-01, 1.797693134862e+308, 2.6028e+00, 1.4612e-01, - 2DIAGNOSTIC, 9, -5.887374392214e-01, 1.797693134862e+308, 2.7302e+00, 1.2745e-01, - 2DIAGNOSTIC, 10, -5.888679066105e-01, 1.689934791997e-04, 2.8397e+00, 1.0943e-01, - 2DIAGNOSTIC, 11, -5.888846470572e-01, 1.196541441182e-04, 2.9665e+00, 1.2685e-01, - 2DIAGNOSTIC, 12, -5.888796334158e-01, 8.417342645305e-05, 3.0894e+00, 1.2287e-01, - 2DIAGNOSTIC, 13, -5.888801827228e-01, 6.005244421302e-05, 3.2269e+00, 1.3753e-01, - 2DIAGNOSTIC, 14, -5.888863143174e-01, 4.265579317637e-05, 3.3829e+00, 1.5601e-01, - 2DIAGNOSTIC, 15, -5.888844902710e-01, 2.825708713819e-05, 3.5363e+00, 1.5338e-01, - 2DIAGNOSTIC, 16, -5.888849110302e-01, 1.933004104342e-05, 3.6728e+00, 1.3650e-01, - 2DIAGNOSTIC, 17, -5.888815801430e-01, 1.169319837126e-05, 3.8087e+00, 1.3587e-01, - 2DIAGNOSTIC, 18, -5.888785269942e-01, 5.966799414940e-06, 3.9252e+00, 1.1652e-01, - 2DIAGNOSTIC, 19, -5.888829955950e-01, 2.005916821486e-06, 4.0754e+00, 1.5026e-01, - 2DIAGNOSTIC, 20, -5.888826946314e-01, 1.535359582146e-06, 4.2070e+00, 1.3153e-01, - 2DIAGNOSTIC, 21, -5.888788451212e-01, 1.417600876540e-06, 4.3193e+00, 1.1234e-01, - 2DIAGNOSTIC, 22, -5.888803985745e-01, 1.249757727154e-06, 4.4510e+00, 1.3165e-01, - 2DIAGNOSTIC, 23, -5.888822830285e-01, 1.160994973881e-06, 4.5793e+00, 1.2834e-01, - 2DIAGNOSTIC, 24, -5.888786907304e-01, 1.148424157986e-06, 4.7086e+00, 1.2928e-01, - 2DIAGNOSTIC, 25, -5.888794468071e-01, 1.133900614049e-06, 4.8232e+00, 1.1462e-01, - 2DIAGNOSTIC, 26, -5.888791183212e-01, 1.138211232946e-06, 4.9555e+00, 1.3228e-01, - 2DIAGNOSTIC, 27, -5.888801780311e-01, 1.111052689219e-06, 5.0637e+00, 1.0824e-01, - Elapsed time (stage 1): 5.1993e+00 - - -Total elapsed time: 1.1693e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:49:24 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 19:49:27 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55dc07aef4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.01, 53.028, -110.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dc07af4fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f89042e0010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55dc07af0850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.01, 53.028, -110.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dc07aedf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f8900c21010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55dc07b07b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.01, 53.028, -110.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dc07af4550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f88fd562010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55dc07b0cd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.01, 53.028, -110.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dc07b0ac00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f88f9ea3010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55dc07b0ef70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.01, 53.028, -110.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dc07b0d3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f88f67e4010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55dc07b0f540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.01, 53.028, -110.953] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dc07b0f4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f88f3125010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.435275862875e-01, 1.797693134862e+308, 2.1188e-01, 2.1188e-01, - 2DIAGNOSTIC, 2, -6.467431953619e-01, 1.797693134862e+308, 2.1396e-01, 2.0850e-03, - 2DIAGNOSTIC, 3, -6.527249936507e-01, 1.797693134862e+308, 2.1598e-01, 2.0199e-03, - 2DIAGNOSTIC, 4, -6.621153333906e-01, 1.797693134862e+308, 2.1795e-01, 1.9710e-03, - 2DIAGNOSTIC, 5, -6.700794202631e-01, 1.797693134862e+308, 2.2003e-01, 2.0771e-03, - 2DIAGNOSTIC, 6, -6.754626598589e-01, 1.797693134862e+308, 2.2208e-01, 2.0540e-03, - 2DIAGNOSTIC, 7, -6.775881800104e-01, 1.797693134862e+308, 2.2412e-01, 2.0351e-03, - 2DIAGNOSTIC, 8, -6.777810218304e-01, 1.797693134862e+308, 2.2640e-01, 2.2810e-03, - 2DIAGNOSTIC, 9, -6.777416932924e-01, 1.797693134862e+308, 2.2841e-01, 2.0070e-03, - 2DIAGNOSTIC, 10, -6.783607138922e-01, 3.741067291951e-03, 2.3118e-01, 2.7771e-03, - 2DIAGNOSTIC, 11, -6.786770717944e-01, 2.683928324339e-03, 2.3474e-01, 3.5548e-03, - 2DIAGNOSTIC, 12, -6.787665823025e-01, 1.683227659097e-03, 2.3694e-01, 2.2039e-03, - 2DIAGNOSTIC, 13, -6.786536105160e-01, 8.761350825195e-04, 2.3941e-01, 2.4660e-03, - 2DIAGNOSTIC, 14, -6.785054785997e-01, 3.830423167815e-04, 2.4165e-01, 2.2399e-03, - 2DIAGNOSTIC, 15, -6.786103543499e-01, 1.460804587493e-04, 2.4426e-01, 2.6090e-03, - 2DIAGNOSTIC, 16, -6.784026338070e-01, 6.097231367720e-05, 2.4684e-01, 2.5799e-03, - 2DIAGNOSTIC, 17, -6.781739590820e-01, 2.796310763514e-05, 2.4944e-01, 2.6059e-03, - 2DIAGNOSTIC, 18, -6.782108906314e-01, 2.159675477759e-06, 2.5214e-01, 2.6951e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.869440272583e-01, 1.797693134862e+308, 4.8136e-01, 2.2922e-01, - 2DIAGNOSTIC, 2, -5.873205029666e-01, 1.797693134862e+308, 4.9469e-01, 1.3332e-02, - 2DIAGNOSTIC, 3, -5.877973483852e-01, 1.797693134862e+308, 5.0948e-01, 1.4794e-02, - 2DIAGNOSTIC, 4, -5.880450212628e-01, 1.797693134862e+308, 5.2735e-01, 1.7866e-02, - 2DIAGNOSTIC, 5, -5.881026015978e-01, 1.797693134862e+308, 5.4321e-01, 1.5860e-02, - 2DIAGNOSTIC, 6, -5.881016381268e-01, 1.797693134862e+308, 5.5909e-01, 1.5883e-02, - 2DIAGNOSTIC, 7, -5.881050951661e-01, 1.797693134862e+308, 5.7498e-01, 1.5886e-02, - 2DIAGNOSTIC, 8, -5.881497638265e-01, 1.797693134862e+308, 5.8839e-01, 1.3409e-02, - 2DIAGNOSTIC, 9, -5.882131975929e-01, 1.797693134862e+308, 6.0347e-01, 1.5086e-02, - 2DIAGNOSTIC, 10, -5.883175730162e-01, 1.205913323084e-04, 6.1802e-01, 1.4547e-02, - 2DIAGNOSTIC, 11, -5.884492483440e-01, 7.864588620773e-05, 6.3325e-01, 1.5229e-02, - 2DIAGNOSTIC, 12, -5.887672570582e-01, 6.441368902560e-05, 6.4973e-01, 1.6485e-02, - 2DIAGNOSTIC, 13, -5.891418201195e-01, 7.795283690921e-05, 6.7112e-01, 2.1383e-02, - 2DIAGNOSTIC, 14, -5.896199306439e-01, 1.074654174796e-04, 6.9318e-01, 2.2063e-02, - 2DIAGNOSTIC, 15, -5.896307997713e-01, 1.254541272818e-04, 7.0945e-01, 1.6265e-02, - 2DIAGNOSTIC, 16, -5.896010340639e-01, 1.292325248151e-04, 7.2580e-01, 1.6353e-02, - 2DIAGNOSTIC, 17, -5.895806924524e-01, 1.204500605964e-04, 7.4162e-01, 1.5820e-02, - 2DIAGNOSTIC, 18, -5.895615555350e-01, 1.021808400204e-04, 7.5599e-01, 1.4367e-02, - 2DIAGNOSTIC, 19, -5.895558060061e-01, 7.784978759469e-05, 7.7031e-01, 1.4325e-02, - 2DIAGNOSTIC, 20, -5.895605506703e-01, 5.160644783308e-05, 7.9284e-01, 2.2531e-02, - 2DIAGNOSTIC, 21, -5.895474747800e-01, 2.600808784423e-05, 8.0935e-01, 1.6504e-02, - 2DIAGNOSTIC, 22, -5.895209564379e-01, 6.763723177920e-06, 8.2445e-01, 1.5108e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.873675614268e-01, 1.797693134862e+308, 1.2066e+00, 3.8214e-01, - 2DIAGNOSTIC, 2, -4.877010388243e-01, 1.797693134862e+308, 1.3000e+00, 9.3437e-02, - 2DIAGNOSTIC, 3, -4.879593051714e-01, 1.797693134862e+308, 1.3919e+00, 9.1833e-02, - 2DIAGNOSTIC, 4, -4.881196099995e-01, 1.797693134862e+308, 1.4843e+00, 9.2433e-02, - 2DIAGNOSTIC, 5, -4.881951309910e-01, 1.797693134862e+308, 1.6143e+00, 1.3000e-01, - 2DIAGNOSTIC, 6, -4.881875995783e-01, 1.797693134862e+308, 1.7191e+00, 1.0475e-01, - 2DIAGNOSTIC, 7, -4.881755837299e-01, 1.797693134862e+308, 1.8240e+00, 1.0496e-01, - 2DIAGNOSTIC, 8, -4.881738732226e-01, 1.797693134862e+308, 1.9182e+00, 9.4179e-02, - 2DIAGNOSTIC, 9, -4.881871267833e-01, 1.797693134862e+308, 2.0180e+00, 9.9841e-02, - 2DIAGNOSTIC, 10, -4.882005863327e-01, 8.664633570445e-05, 2.1244e+00, 1.0631e-01, - 2DIAGNOSTIC, 11, -4.882143520985e-01, 4.310542523440e-05, 2.2442e+00, 1.1982e-01, - 2DIAGNOSTIC, 12, -4.882268082179e-01, 1.981023051775e-05, 2.3947e+00, 1.5052e-01, - 2DIAGNOSTIC, 13, -4.882268818736e-01, 9.954445991306e-06, 2.5017e+00, 1.0703e-01, - 2DIAGNOSTIC, 14, -4.882243239010e-01, 7.288703627914e-06, 2.6782e+00, 1.7643e-01, - 2DIAGNOSTIC, 15, -4.882241367264e-01, 7.444649455596e-06, 2.7862e+00, 1.0802e-01, - 2DIAGNOSTIC, 16, -4.882231087496e-01, 6.788221553755e-06, 2.8916e+00, 1.0541e-01, - 2DIAGNOSTIC, 17, -4.882215072406e-01, 5.305978248715e-06, 3.0098e+00, 1.1818e-01, - 2DIAGNOSTIC, 18, -4.882192840872e-01, 3.543912811321e-06, 3.1157e+00, 1.0597e-01, - 2DIAGNOSTIC, 19, -4.882195868286e-01, 2.219857999919e-06, 3.2097e+00, 9.3975e-02, - 2DIAGNOSTIC, 20, -4.882174652106e-01, 1.299248525870e-06, 3.3020e+00, 9.2249e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.270659235162e-01, 1.797693134862e+308, 4.5599e+00, 1.2579e+00, - 2DIAGNOSTIC, 2, -4.274234574166e-01, 1.797693134862e+308, 5.1215e+00, 5.6166e-01, - 2DIAGNOSTIC, 3, -4.274938586745e-01, 1.797693134862e+308, 5.6709e+00, 5.4932e-01, - 2DIAGNOSTIC, 4, -4.276489000254e-01, 1.797693134862e+308, 7.2493e+00, 1.5785e+00, - 2DIAGNOSTIC, 5, -4.276487533630e-01, 1.797693134862e+308, 7.9580e+00, 7.0868e-01, - 2DIAGNOSTIC, 6, -4.276483996006e-01, 1.797693134862e+308, 8.5911e+00, 6.3313e-01, - 2DIAGNOSTIC, 7, -4.276484656370e-01, 1.797693134862e+308, 9.2160e+00, 6.2489e-01, - 2DIAGNOSTIC, 8, -4.276484166509e-01, 1.797693134862e+308, 9.8543e+00, 6.3826e-01, - 2DIAGNOSTIC, 9, -4.276483339253e-01, 1.797693134862e+308, 1.0470e+01, 6.1550e-01, - 2DIAGNOSTIC, 10, -4.276481338260e-01, 6.213914838205e-05, 1.1085e+01, 6.1479e-01, - 2DIAGNOSTIC, 11, -4.276479030580e-01, 2.456618074469e-05, 1.1652e+01, 5.6708e-01, - 2DIAGNOSTIC, 12, -4.276475677042e-01, 1.109121521670e-05, 1.2343e+01, 6.9091e-01, - 2DIAGNOSTIC, 13, -4.276474620001e-01, 2.294409262818e-06, 1.2960e+01, 6.1774e-01, - 2DIAGNOSTIC, 14, -4.276473720766e-01, 2.125144086346e-06, 1.3532e+01, 5.7206e-01, - 2DIAGNOSTIC, 15, -4.276472922735e-01, 1.982334994446e-06, 1.4183e+01, 6.5089e-01, - 2DIAGNOSTIC, 16, -4.276470693138e-01, 1.846199276845e-06, 1.4802e+01, 6.1876e-01, - 2DIAGNOSTIC, 17, -4.276468386282e-01, 1.733048534930e-06, 1.5391e+01, 5.8930e-01, - 2DIAGNOSTIC, 18, -4.276468871497e-01, 1.645317617850e-06, 1.5953e+01, 5.6134e-01, - 2DIAGNOSTIC, 19, -4.276468262365e-01, 1.572830711692e-06, 1.6568e+01, 6.1538e-01, - 2DIAGNOSTIC, 20, -4.276467656283e-01, 1.508432037306e-06, 1.7178e+01, 6.0975e-01, - 2DIAGNOSTIC, 21, -4.276462470472e-01, 1.434542191953e-06, 1.7791e+01, 6.1364e-01, - 2DIAGNOSTIC, 22, -4.276460370478e-01, 1.358951750074e-06, 1.8438e+01, 6.4698e-01, - 2DIAGNOSTIC, 23, -4.276458411954e-01, 1.289284059569e-06, 1.9089e+01, 6.5009e-01, - 2DIAGNOSTIC, 24, -4.276456621905e-01, 1.226541378935e-06, 1.9737e+01, 6.4869e-01, - 2DIAGNOSTIC, 25, -4.276453403025e-01, 1.167619783388e-06, 2.0369e+01, 6.3162e-01, - 2DIAGNOSTIC, 26, -4.276451821072e-01, 1.113859305076e-06, 2.1005e+01, 6.3629e-01, - 2DIAGNOSTIC, 27, -4.276451218718e-01, 1.067273631861e-06, 2.1580e+01, 5.7479e-01, - 2DIAGNOSTIC, 28, -4.276451183633e-01, 1.035358201958e-06, 2.2285e+01, 7.0490e-01, - 2DIAGNOSTIC, 29, -4.276451940633e-01, 1.015360698110e-06, 2.2899e+01, 6.1380e-01, - Elapsed time (stage 0): 2.3267e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.505970345405e-01, 1.797693134862e+308, 1.8182e-01, 1.8182e-01, - 2DIAGNOSTIC, 2, -6.525088994007e-01, 1.797693134862e+308, 1.8429e-01, 2.4741e-03, - 2DIAGNOSTIC, 3, -6.550236747032e-01, 1.797693134862e+308, 1.8662e-01, 2.3301e-03, - 2DIAGNOSTIC, 4, -6.589216195251e-01, 1.797693134862e+308, 1.8896e-01, 2.3351e-03, - 2DIAGNOSTIC, 5, -6.647293735927e-01, 1.797693134862e+308, 1.9126e-01, 2.3019e-03, - 2DIAGNOSTIC, 6, -6.727157547240e-01, 1.797693134862e+308, 1.9376e-01, 2.4951e-03, - 2DIAGNOSTIC, 7, -6.757537156585e-01, 1.797693134862e+308, 1.9587e-01, 2.1160e-03, - 2DIAGNOSTIC, 8, -6.778932775273e-01, 1.797693134862e+308, 1.9851e-01, 2.6391e-03, - 2DIAGNOSTIC, 9, -6.787883843505e-01, 1.797693134862e+308, 2.0176e-01, 3.2501e-03, - 2DIAGNOSTIC, 10, -6.789503907559e-01, 3.266848525681e-03, 2.0442e-01, 2.6569e-03, - 2DIAGNOSTIC, 11, -6.808648144024e-01, 2.705241683060e-03, 2.0734e-01, 2.9261e-03, - 2DIAGNOSTIC, 12, -6.818888918839e-01, 2.098617782090e-03, 2.0980e-01, 2.4519e-03, - 2DIAGNOSTIC, 13, -6.822599998746e-01, 1.493215168735e-03, 2.1246e-01, 2.6650e-03, - 2DIAGNOSTIC, 14, -6.832597772437e-01, 9.882687777322e-04, 2.1495e-01, 2.4881e-03, - 2DIAGNOSTIC, 15, -6.846887233704e-01, 6.608629615915e-04, 2.1798e-01, 3.0282e-03, - 2DIAGNOSTIC, 16, -6.852693790009e-01, 5.381548469045e-04, 2.2064e-01, 2.6672e-03, - 2DIAGNOSTIC, 17, -6.854216668043e-01, 4.586058674556e-04, 2.2326e-01, 2.6178e-03, - 2DIAGNOSTIC, 18, -6.855022323058e-01, 3.983465264070e-04, 2.2618e-01, 2.9211e-03, - 2DIAGNOSTIC, 19, -6.856604976815e-01, 3.316182077279e-04, 2.2851e-01, 2.3270e-03, - 2DIAGNOSTIC, 20, -6.854245399035e-01, 2.380574742370e-04, 2.3090e-01, 2.3930e-03, - 2DIAGNOSTIC, 21, -6.853262772682e-01, 1.676090676809e-04, 2.3374e-01, 2.8389e-03, - 2DIAGNOSTIC, 22, -6.853831833621e-01, 1.092305479979e-04, 2.3679e-01, 3.0520e-03, - 2DIAGNOSTIC, 23, -6.854474766054e-01, 5.366501153659e-05, 2.4091e-01, 4.1130e-03, - 2DIAGNOSTIC, 24, -6.854512765765e-01, 1.481056274718e-05, 2.4344e-01, 2.5361e-03, - 2DIAGNOSTIC, 25, -6.854694638373e-01, 1.989769331037e-06, 2.4570e-01, 2.2521e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.779762331058e-01, 1.797693134862e+308, 4.6223e-01, 2.1654e-01, - 2DIAGNOSTIC, 2, -5.791405334127e-01, 1.797693134862e+308, 4.7702e-01, 1.4784e-02, - 2DIAGNOSTIC, 3, -5.805092627153e-01, 1.797693134862e+308, 4.9150e-01, 1.4486e-02, - 2DIAGNOSTIC, 4, -5.821212690904e-01, 1.797693134862e+308, 5.0605e-01, 1.4546e-02, - 2DIAGNOSTIC, 5, -5.834293646494e-01, 1.797693134862e+308, 5.2058e-01, 1.4534e-02, - 2DIAGNOSTIC, 6, -5.848017378039e-01, 1.797693134862e+308, 5.3551e-01, 1.4921e-02, - 2DIAGNOSTIC, 7, -5.861577009869e-01, 1.797693134862e+308, 5.5074e-01, 1.5234e-02, - 2DIAGNOSTIC, 8, -5.874818880522e-01, 1.797693134862e+308, 5.7587e-01, 2.5129e-02, - 2DIAGNOSTIC, 9, -5.875224012127e-01, 1.797693134862e+308, 5.9075e-01, 1.4887e-02, - 2DIAGNOSTIC, 10, -5.878265043318e-01, 1.180520159924e-03, 6.0593e-01, 1.5176e-02, - 2DIAGNOSTIC, 11, -5.880230783825e-01, 9.399285822648e-04, 6.2104e-01, 1.5111e-02, - 2DIAGNOSTIC, 12, -5.882977838824e-01, 7.126731048158e-04, 6.3629e-01, 1.5246e-02, - 2DIAGNOSTIC, 13, -5.889137475850e-01, 5.293256665728e-04, 6.5710e-01, 2.0816e-02, - 2DIAGNOSTIC, 14, -5.890645815493e-01, 3.850893673000e-04, 6.7681e-01, 1.9710e-02, - 2DIAGNOSTIC, 15, -5.890865840928e-01, 2.683326415144e-04, 6.9776e-01, 2.0943e-02, - 2DIAGNOSTIC, 16, -5.890826302144e-01, 1.828644832160e-04, 7.1448e-01, 1.6724e-02, - 2DIAGNOSTIC, 17, -5.890767777295e-01, 1.283275208160e-04, 7.3033e-01, 1.5849e-02, - 2DIAGNOSTIC, 18, -5.890719366365e-01, 1.035989916759e-04, 7.4656e-01, 1.6227e-02, - 2DIAGNOSTIC, 19, -5.890435876945e-01, 7.219037203716e-05, 7.6324e-01, 1.6679e-02, - 2DIAGNOSTIC, 20, -5.890400572821e-01, 4.485321671543e-05, 7.7729e-01, 1.4051e-02, - 2DIAGNOSTIC, 21, -5.890292774500e-01, 2.042971390816e-05, 7.9364e-01, 1.6356e-02, - 2DIAGNOSTIC, 22, -5.890402624289e-01, 2.420788218625e-06, 8.1091e-01, 1.7271e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.864260389555e-01, 1.797693134862e+308, 1.2037e+00, 3.9284e-01, - 2DIAGNOSTIC, 2, -4.871001897840e-01, 1.797693134862e+308, 1.3069e+00, 1.0316e-01, - 2DIAGNOSTIC, 3, -4.878320704423e-01, 1.797693134862e+308, 1.4079e+00, 1.0096e-01, - 2DIAGNOSTIC, 4, -4.883017228015e-01, 1.797693134862e+308, 1.5156e+00, 1.0775e-01, - 2DIAGNOSTIC, 5, -4.885211821253e-01, 1.797693134862e+308, 1.6192e+00, 1.0361e-01, - 2DIAGNOSTIC, 6, -4.887098681867e-01, 1.797693134862e+308, 1.7237e+00, 1.0447e-01, - 2DIAGNOSTIC, 7, -4.890994432517e-01, 1.797693134862e+308, 1.8574e+00, 1.3373e-01, - 2DIAGNOSTIC, 8, -4.895464862920e-01, 1.797693134862e+308, 1.9760e+00, 1.1856e-01, - 2DIAGNOSTIC, 9, -4.896398634466e-01, 1.797693134862e+308, 2.0929e+00, 1.1693e-01, - 2DIAGNOSTIC, 10, -4.897161174744e-01, 4.172047994593e-04, 2.2436e+00, 1.5064e-01, - 2DIAGNOSTIC, 11, -4.897707662700e-01, 3.095435592751e-04, 2.3536e+00, 1.1003e-01, - 2DIAGNOSTIC, 12, -4.898863321082e-01, 2.296818514419e-04, 2.4664e+00, 1.1280e-01, - 2DIAGNOSTIC, 13, -4.899180292860e-01, 1.749626612729e-04, 2.5774e+00, 1.1100e-01, - 2DIAGNOSTIC, 14, -4.899472681831e-01, 1.331333414955e-04, 2.6850e+00, 1.0755e-01, - 2DIAGNOSTIC, 15, -4.899852639095e-01, 9.516265890980e-05, 2.8348e+00, 1.4988e-01, - 2DIAGNOSTIC, 16, -4.900122761391e-01, 6.102939118605e-05, 2.9387e+00, 1.0390e-01, - 2DIAGNOSTIC, 17, -4.900294158945e-01, 3.895809281273e-05, 3.0856e+00, 1.4688e-01, - 2DIAGNOSTIC, 18, -4.900728909338e-01, 3.170385980539e-05, 3.1894e+00, 1.0379e-01, - 2DIAGNOSTIC, 19, -4.900831041588e-01, 2.557817343214e-05, 3.2961e+00, 1.0672e-01, - 2DIAGNOSTIC, 20, -4.901096082146e-01, 2.083005101478e-05, 3.4009e+00, 1.0477e-01, - 2DIAGNOSTIC, 21, -4.901392487420e-01, 1.699021702369e-05, 3.5221e+00, 1.2118e-01, - 2DIAGNOSTIC, 22, -4.901682483053e-01, 1.584959727609e-05, 3.6899e+00, 1.6784e-01, - 2DIAGNOSTIC, 23, -4.901792869523e-01, 1.451951750295e-05, 3.7939e+00, 1.0402e-01, - 2DIAGNOSTIC, 24, -4.901847230357e-01, 1.289862804342e-05, 3.9002e+00, 1.0631e-01, - 2DIAGNOSTIC, 25, -4.902021828339e-01, 1.160908979629e-05, 4.0036e+00, 1.0334e-01, - 2DIAGNOSTIC, 26, -4.902626806827e-01, 1.138418477659e-05, 4.1345e+00, 1.3094e-01, - 2DIAGNOSTIC, 27, -4.903056558275e-01, 1.145237213734e-05, 4.2558e+00, 1.2131e-01, - 2DIAGNOSTIC, 28, -4.903206913516e-01, 1.175960902320e-05, 4.3758e+00, 1.1999e-01, - 2DIAGNOSTIC, 29, -4.903323865765e-01, 1.150002846829e-05, 4.5123e+00, 1.3644e-01, - 2DIAGNOSTIC, 30, -4.903330377221e-01, 1.079369101587e-05, 4.6354e+00, 1.2312e-01, - 2DIAGNOSTIC, 31, -4.903332363838e-01, 9.742686641272e-06, 4.7563e+00, 1.2093e-01, - 2DIAGNOSTIC, 32, -4.903328735997e-01, 8.436955746940e-06, 4.8804e+00, 1.2414e-01, - 2DIAGNOSTIC, 33, -4.903319791792e-01, 6.693755499387e-06, 5.2342e+00, 3.5371e-01, - 2DIAGNOSTIC, 34, -4.903319791762e-01, 4.614125025827e-06, 5.5731e+00, 3.3892e-01, - 2DIAGNOSTIC, 35, -4.903319791762e-01, 2.576307855592e-06, 5.6923e+00, 1.1921e-01, - 2DIAGNOSTIC, 36, -4.903319791762e-01, 1.454544312610e-06, 5.8669e+00, 1.7462e-01, - 2DIAGNOSTIC, 37, -4.903319791762e-01, 1.009099905636e-06, 6.0228e+00, 1.5587e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.269279779026e-01, 1.797693134862e+308, 7.4261e+00, 1.4033e+00, - 2DIAGNOSTIC, 2, -4.271568729460e-01, 1.797693134862e+308, 8.0642e+00, 6.3812e-01, - 2DIAGNOSTIC, 3, -4.274025382731e-01, 1.797693134862e+308, 8.7496e+00, 6.8535e-01, - 2DIAGNOSTIC, 4, -4.276757870263e-01, 1.797693134862e+308, 9.4016e+00, 6.5208e-01, - 2DIAGNOSTIC, 5, -4.280965423173e-01, 1.797693134862e+308, 1.0314e+01, 9.1270e-01, - 2DIAGNOSTIC, 6, -4.281622951228e-01, 1.797693134862e+308, 1.1344e+01, 1.0295e+00, - 2DIAGNOSTIC, 7, -4.281629536057e-01, 1.797693134862e+308, 1.2054e+01, 7.1061e-01, - 2DIAGNOSTIC, 8, -4.281623304652e-01, 1.797693134862e+308, 1.2727e+01, 6.7216e-01, - 2DIAGNOSTIC, 9, -4.281620711850e-01, 1.797693134862e+308, 1.3431e+01, 7.0446e-01, - 2DIAGNOSTIC, 10, -4.281618769140e-01, 1.947642167170e-04, 1.4220e+01, 7.8929e-01, - 2DIAGNOSTIC, 11, -4.281614420734e-01, 1.261012156438e-04, 1.4998e+01, 7.7811e-01, - 2DIAGNOSTIC, 12, -4.281613441193e-01, 7.066669748866e-05, 1.5593e+01, 5.9484e-01, - 2DIAGNOSTIC, 13, -4.281609411754e-01, 3.007037207355e-05, 1.6356e+01, 7.6302e-01, - 2DIAGNOSTIC, 14, -4.281607816105e-01, 5.190185745296e-06, 1.7069e+01, 7.1236e-01, - 2DIAGNOSTIC, 15, -4.281607647067e-01, 1.908656553445e-06, 1.7754e+01, 6.8525e-01, - 2DIAGNOSTIC, 16, -4.281607452871e-01, 1.784321379081e-06, 1.8434e+01, 6.8026e-01, - 2DIAGNOSTIC, 17, -4.281606347986e-01, 1.715437037045e-06, 1.9057e+01, 6.2252e-01, - 2DIAGNOSTIC, 18, -4.281607787779e-01, 1.651312457121e-06, 1.9686e+01, 6.2980e-01, - 2DIAGNOSTIC, 19, -4.281611166806e-01, 1.607407076144e-06, 2.0368e+01, 6.8175e-01, - 2DIAGNOSTIC, 20, -4.281613620725e-01, 1.575731293738e-06, 2.1070e+01, 7.0212e-01, - 2DIAGNOSTIC, 21, -4.281614767527e-01, 1.538245394284e-06, 2.1772e+01, 7.0192e-01, - 2DIAGNOSTIC, 22, -4.281614438369e-01, 1.498562268699e-06, 2.2434e+01, 6.6194e-01, - 2DIAGNOSTIC, 23, -4.281610954216e-01, 1.435968212296e-06, 2.3099e+01, 6.6489e-01, - 2DIAGNOSTIC, 24, -4.281610342855e-01, 1.367646495783e-06, 2.3804e+01, 7.0447e-01, - 2DIAGNOSTIC, 25, -4.281609053239e-01, 1.296802777877e-06, 2.4402e+01, 5.9869e-01, - 2DIAGNOSTIC, 26, -4.281611184387e-01, 1.234227507543e-06, 2.5175e+01, 7.7325e-01, - 2DIAGNOSTIC, 27, -4.281609486432e-01, 1.168338331907e-06, 2.6211e+01, 1.0357e+00, - 2DIAGNOSTIC, 28, -4.281610221467e-01, 1.113431824760e-06, 2.6885e+01, 6.7344e-01, - 2DIAGNOSTIC, 29, -4.281608100190e-01, 1.067270091484e-06, 2.7506e+01, 6.2183e-01, - 2DIAGNOSTIC, 30, -4.281606468129e-01, 1.028757078810e-06, 2.8195e+01, 6.8819e-01, - Elapsed time (stage 1): 2.8600e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.973738681651e-01, 1.797693134862e+308, 2.6054e-01, 2.6054e-01, - 1DIAGNOSTIC, 2, -9.070951351605e-01, 1.797693134862e+308, 3.5597e-01, 9.5430e-02, - 1DIAGNOSTIC, 3, -9.144508940350e-01, 1.797693134862e+308, 4.5613e-01, 1.0016e-01, - 1DIAGNOSTIC, 4, -9.199581456362e-01, 1.797693134862e+308, 5.5437e-01, 9.8239e-02, - 1DIAGNOSTIC, 5, -9.245773445616e-01, 1.797693134862e+308, 6.4933e-01, 9.4961e-02, - 1DIAGNOSTIC, 6, -9.280732990763e-01, 1.797693134862e+308, 7.4752e-01, 9.8190e-02, - 1DIAGNOSTIC, 7, -9.311110975609e-01, 1.797693134862e+308, 8.4992e-01, 1.0240e-01, - 1DIAGNOSTIC, 8, -9.336727799314e-01, 1.797693134862e+308, 9.4720e-01, 9.7288e-02, - 1DIAGNOSTIC, 9, -9.357709739093e-01, 1.797693134862e+308, 1.0530e+00, 1.0584e-01, - 1DIAGNOSTIC, 10, -9.375531744081e-01, 2.605544669311e-03, 1.1496e+00, 9.6599e-02, - 1DIAGNOSTIC, 11, -9.389910804105e-01, 1.901489412045e-03, 1.2498e+00, 1.0014e-01, - 1DIAGNOSTIC, 12, -9.403006505078e-01, 1.425244283203e-03, 1.3520e+00, 1.0223e-01, - 1DIAGNOSTIC, 13, -9.414026590252e-01, 1.092105636057e-03, 1.4535e+00, 1.0147e-01, - 1DIAGNOSTIC, 14, -9.422987852927e-01, 8.465550812800e-04, 1.5580e+00, 1.0452e-01, - 1DIAGNOSTIC, 15, -9.430706074779e-01, 6.659855996381e-04, 1.6611e+00, 1.0309e-01, - 1DIAGNOSTIC, 16, -9.437487696160e-01, 5.262189991788e-04, 1.7593e+00, 9.8178e-02, - 1DIAGNOSTIC, 17, -9.443228737106e-01, 4.189374074334e-04, 1.8608e+00, 1.0148e-01, - 1DIAGNOSTIC, 18, -9.448399830377e-01, 3.367763523700e-04, 1.9639e+00, 1.0314e-01, - 1DIAGNOSTIC, 19, -9.452869020159e-01, 2.726864803682e-04, 2.0646e+00, 1.0069e-01, - 1DIAGNOSTIC, 20, -9.456706391606e-01, 2.225525800720e-04, 2.1634e+00, 9.8767e-02, - 1DIAGNOSTIC, 21, -9.460014787974e-01, 1.819857541086e-04, 2.2629e+00, 9.9592e-02, - 1DIAGNOSTIC, 22, -9.462850255989e-01, 1.500684781828e-04, 2.3663e+00, 1.0331e-01, - 1DIAGNOSTIC, 23, -9.465358789364e-01, 1.247401865841e-04, 2.4702e+00, 1.0396e-01, - 1DIAGNOSTIC, 24, -9.467357793217e-01, 1.036940180351e-04, 2.5642e+00, 9.4000e-02, - 1DIAGNOSTIC, 25, -9.469461583884e-01, 8.653731282852e-05, 2.6628e+00, 9.8558e-02, - 1DIAGNOSTIC, 26, -9.470889511453e-01, 7.216402648946e-05, 2.7579e+00, 9.5079e-02, - 1DIAGNOSTIC, 27, -9.472100143765e-01, 5.990781246965e-05, 2.8565e+00, 9.8632e-02, - 1DIAGNOSTIC, 28, -9.473119437361e-01, 4.962945881067e-05, 2.9610e+00, 1.0456e-01, - 1DIAGNOSTIC, 29, -9.473986821299e-01, 4.100121094662e-05, 3.0617e+00, 1.0062e-01, - 1DIAGNOSTIC, 30, -9.474500162303e-01, 3.351780014792e-05, 3.1695e+00, 1.0780e-01, - 1DIAGNOSTIC, 31, -9.475091286042e-01, 2.722167147871e-05, 3.2725e+00, 1.0303e-01, - 1DIAGNOSTIC, 32, -9.475555548751e-01, 2.192840445996e-05, 3.3763e+00, 1.0375e-01, - 1DIAGNOSTIC, 33, -9.475934158715e-01, 1.759541413549e-05, 3.4774e+00, 1.0114e-01, - 1DIAGNOSTIC, 34, -9.476180116069e-01, 1.390593875372e-05, 3.5800e+00, 1.0260e-01, - 1DIAGNOSTIC, 35, -9.476370259610e-01, 1.116534039133e-05, 3.6780e+00, 9.7974e-02, - 1DIAGNOSTIC, 36, -9.476570291019e-01, 8.956990696276e-06, 3.7811e+00, 1.0315e-01, - 1DIAGNOSTIC, 37, -9.476741301906e-01, 7.213822108349e-06, 3.8842e+00, 1.0313e-01, - 1DIAGNOSTIC, 38, -9.476887920684e-01, 5.872875252031e-06, 3.9800e+00, 9.5773e-02, - 1DIAGNOSTIC, 39, -9.477007776201e-01, 4.883499391969e-06, 4.0773e+00, 9.7306e-02, - 1DIAGNOSTIC, 40, -9.477099645020e-01, 4.007407789098e-06, 4.1827e+00, 1.0534e-01, - 1DIAGNOSTIC, 41, -9.477169590640e-01, 3.349771914095e-06, 4.2857e+00, 1.0302e-01, - 1DIAGNOSTIC, 42, -9.477217744496e-01, 2.841538343075e-06, 4.3930e+00, 1.0733e-01, - 1DIAGNOSTIC, 43, -9.477231915595e-01, 2.431697783481e-06, 4.5065e+00, 1.1343e-01, - 1DIAGNOSTIC, 44, -9.477226337471e-01, 2.043209371083e-06, 4.6152e+00, 1.0878e-01, - 1DIAGNOSTIC, 45, -9.477201349083e-01, 1.655588989517e-06, 4.7221e+00, 1.0690e-01, - 1DIAGNOSTIC, 46, -9.477158650824e-01, 1.296631921367e-06, 4.8272e+00, 1.0511e-01, - 1DIAGNOSTIC, 47, -9.477096066338e-01, 9.642551048322e-07, 4.9341e+00, 1.0690e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.991025287527e-01, 1.797693134862e+308, 5.8099e+00, 8.7581e-01, - 1DIAGNOSTIC, 2, -9.038035043095e-01, 1.797693134862e+308, 6.4744e+00, 6.6448e-01, - 1DIAGNOSTIC, 3, -9.078142592505e-01, 1.797693134862e+308, 7.1432e+00, 6.6879e-01, - 1DIAGNOSTIC, 4, -9.108626644836e-01, 1.797693134862e+308, 7.8115e+00, 6.6832e-01, - 1DIAGNOSTIC, 5, -9.131686581010e-01, 1.797693134862e+308, 8.4800e+00, 6.6843e-01, - 1DIAGNOSTIC, 6, -9.151426106740e-01, 1.797693134862e+308, 9.1470e+00, 6.6707e-01, - 1DIAGNOSTIC, 7, -9.168622820436e-01, 1.797693134862e+308, 9.8694e+00, 7.2237e-01, - 1DIAGNOSTIC, 8, -9.183848117759e-01, 1.797693134862e+308, 1.0543e+01, 6.7382e-01, - 1DIAGNOSTIC, 9, -9.196317247275e-01, 1.797693134862e+308, 1.1221e+01, 6.7821e-01, - 1DIAGNOSTIC, 10, -9.206356680776e-01, 1.433030086916e-03, 1.1894e+01, 6.7291e-01, - 1DIAGNOSTIC, 11, -9.216592212699e-01, 1.075931855878e-03, 1.2602e+01, 7.0720e-01, - 1DIAGNOSTIC, 12, -9.224787265720e-01, 8.236206308381e-04, 1.3262e+01, 6.6012e-01, - 1DIAGNOSTIC, 13, -9.232228785367e-01, 6.485683836893e-04, 1.3930e+01, 6.6872e-01, - 1DIAGNOSTIC, 14, -9.239005651175e-01, 5.218160072446e-04, 1.4597e+01, 6.6633e-01, - 1DIAGNOSTIC, 15, -9.245215882456e-01, 4.245366684115e-04, 1.5261e+01, 6.6422e-01, - 1DIAGNOSTIC, 16, -9.250876825374e-01, 3.493957828039e-04, 1.5929e+01, 6.6785e-01, - 1DIAGNOSTIC, 17, -9.256048525559e-01, 2.914182942864e-04, 1.6595e+01, 6.6575e-01, - 1DIAGNOSTIC, 18, -9.260756298456e-01, 2.471001946033e-04, 1.7253e+01, 6.5894e-01, - 1DIAGNOSTIC, 19, -9.265078801933e-01, 2.118305738324e-04, 1.7924e+01, 6.7053e-01, - 1DIAGNOSTIC, 20, -9.269031655706e-01, 1.819217564840e-04, 1.8602e+01, 6.7782e-01, - 1DIAGNOSTIC, 21, -9.272676249787e-01, 1.583020325024e-04, 1.9276e+01, 6.7410e-01, - 1DIAGNOSTIC, 22, -9.276041084393e-01, 1.382566823864e-04, 1.9936e+01, 6.6003e-01, - 1DIAGNOSTIC, 23, -9.279079872581e-01, 1.210790223584e-04, 2.0595e+01, 6.5911e-01, - 1DIAGNOSTIC, 24, -9.281815592939e-01, 1.062200258253e-04, 2.1265e+01, 6.7035e-01, - 1DIAGNOSTIC, 25, -9.284365475944e-01, 9.340141467102e-05, 2.1937e+01, 6.7192e-01, - 1DIAGNOSTIC, 26, -9.286706647176e-01, 8.229598251702e-05, 2.2602e+01, 6.6475e-01, - 1DIAGNOSTIC, 27, -9.288890485069e-01, 7.268753123655e-05, 2.3266e+01, 6.6415e-01, - 1DIAGNOSTIC, 28, -9.290877769271e-01, 6.431223714374e-05, 2.3940e+01, 6.7401e-01, - 1DIAGNOSTIC, 29, -9.292714111129e-01, 5.702542737258e-05, 2.4610e+01, 6.6959e-01, - 1DIAGNOSTIC, 30, -9.294393979496e-01, 5.065906328853e-05, 2.5273e+01, 6.6320e-01, - 1DIAGNOSTIC, 31, -9.295978807102e-01, 4.514704473458e-05, 2.5944e+01, 6.7137e-01, - 1DIAGNOSTIC, 32, -9.297492794207e-01, 4.044230132835e-05, 2.6616e+01, 6.7142e-01, - 1DIAGNOSTIC, 33, -9.298838192465e-01, 3.632598582704e-05, 2.7283e+01, 6.6738e-01, - 1DIAGNOSTIC, 34, -9.300077762918e-01, 3.265485494385e-05, 2.7947e+01, 6.6402e-01, - 1DIAGNOSTIC, 35, -9.301193221917e-01, 2.936808843789e-05, 2.8617e+01, 6.6961e-01, - 1DIAGNOSTIC, 36, -9.302257093806e-01, 2.643540802142e-05, 2.9277e+01, 6.6053e-01, - 1DIAGNOSTIC, 37, -9.303229654993e-01, 2.382336275756e-05, 2.9935e+01, 6.5806e-01, - 1DIAGNOSTIC, 38, -9.304165895724e-01, 2.150162652477e-05, 3.0603e+01, 6.6728e-01, - 1DIAGNOSTIC, 39, -9.305033209999e-01, 1.943863399401e-05, 3.1270e+01, 6.6747e-01, - 1DIAGNOSTIC, 40, -9.305774705633e-01, 1.754296836753e-05, 3.1946e+01, 6.7595e-01, - 1DIAGNOSTIC, 41, -9.306538930775e-01, 1.588384119935e-05, 3.2629e+01, 6.8324e-01, - 1DIAGNOSTIC, 42, -9.307227146048e-01, 1.445408907883e-05, 3.3297e+01, 6.6760e-01, - 1DIAGNOSTIC, 43, -9.307769963799e-01, 1.311497120172e-05, 3.3969e+01, 6.7237e-01, - 1DIAGNOSTIC, 44, -9.308340607560e-01, 1.190619478405e-05, 3.4641e+01, 6.7185e-01, - 1DIAGNOSTIC, 45, -9.308920502842e-01, 1.082630197530e-05, 3.5331e+01, 6.8986e-01, - 1DIAGNOSTIC, 46, -9.309462202230e-01, 9.884118452683e-06, 3.6003e+01, 6.7204e-01, - 1DIAGNOSTIC, 47, -9.309977173858e-01, 9.062166552058e-06, 3.6665e+01, 6.6142e-01, - 1DIAGNOSTIC, 48, -9.310465061068e-01, 8.373260456270e-06, 3.7348e+01, 6.8376e-01, - 1DIAGNOSTIC, 49, -9.310921921912e-01, 7.795923776185e-06, 3.8022e+01, 6.7324e-01, - 1DIAGNOSTIC, 50, -9.311349524621e-01, 7.264603273837e-06, 3.8721e+01, 6.9962e-01, - 1DIAGNOSTIC, 51, -9.311739257973e-01, 6.804337414634e-06, 3.9386e+01, 6.6474e-01, - 1DIAGNOSTIC, 52, -9.312137053316e-01, 6.404576787248e-06, 4.0067e+01, 6.8137e-01, - 1DIAGNOSTIC, 53, -9.312497500043e-01, 5.980699736244e-06, 4.0729e+01, 6.6225e-01, - 1DIAGNOSTIC, 54, -9.312840231649e-01, 5.568894526468e-06, 4.1394e+01, 6.6465e-01, - 1DIAGNOSTIC, 55, -9.313164024032e-01, 5.192651318688e-06, 4.2075e+01, 6.8130e-01, - 1DIAGNOSTIC, 56, -9.313467182850e-01, 4.844374965680e-06, 4.2748e+01, 6.7211e-01, - 1DIAGNOSTIC, 57, -9.313763801983e-01, 4.529258301588e-06, 4.3417e+01, 6.6939e-01, - 1DIAGNOSTIC, 58, -9.314032654903e-01, 4.238745640914e-06, 4.4081e+01, 6.6381e-01, - 1DIAGNOSTIC, 59, -9.314286842100e-01, 3.968929708661e-06, 4.4751e+01, 6.6988e-01, - 1DIAGNOSTIC, 60, -9.314440393061e-01, 3.671873848272e-06, 4.5420e+01, 6.6963e-01, - 1DIAGNOSTIC, 61, -9.314668484620e-01, 3.390412169426e-06, 4.6090e+01, 6.7017e-01, - 1DIAGNOSTIC, 62, -9.314869401090e-01, 3.134236049550e-06, 4.6756e+01, 6.6574e-01, - 1DIAGNOSTIC, 63, -9.315073433717e-01, 2.905091523290e-06, 4.7432e+01, 6.7568e-01, - 1DIAGNOSTIC, 64, -9.315265919494e-01, 2.705752642818e-06, 4.8102e+01, 6.7020e-01, - 1DIAGNOSTIC, 65, -9.315434767043e-01, 2.530239206981e-06, 4.8778e+01, 6.7580e-01, - 1DIAGNOSTIC, 66, -9.315603401243e-01, 2.380386393001e-06, 4.9457e+01, 6.7875e-01, - 1DIAGNOSTIC, 67, -9.315756516282e-01, 2.255065363603e-06, 5.0137e+01, 6.8047e-01, - 1DIAGNOSTIC, 68, -9.315907612990e-01, 2.148653465206e-06, 5.0800e+01, 6.6249e-01, - 1DIAGNOSTIC, 69, -9.316039717058e-01, 2.053961676339e-06, 5.1466e+01, 6.6651e-01, - 1DIAGNOSTIC, 70, -9.316175532129e-01, 1.933402399856e-06, 5.2144e+01, 6.7760e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.714657090990e-01, 1.797693134862e+308, 5.7784e+01, 5.6402e+00, - 1DIAGNOSTIC, 2, -8.757222240242e-01, 1.797693134862e+308, 6.3187e+01, 5.4029e+00, - 1DIAGNOSTIC, 3, -8.797968076582e-01, 1.797693134862e+308, 6.8612e+01, 5.4249e+00, - 1DIAGNOSTIC, 4, -8.835030114513e-01, 1.797693134862e+308, 7.4041e+01, 5.4289e+00, - 1DIAGNOSTIC, 5, -8.866788187842e-01, 1.797693134862e+308, 7.9407e+01, 5.3667e+00, - 1DIAGNOSTIC, 6, -8.893986314019e-01, 1.797693134862e+308, 8.4880e+01, 5.4727e+00, - 1DIAGNOSTIC, 7, -8.917407262256e-01, 1.797693134862e+308, 9.0480e+01, 5.5998e+00, - 1DIAGNOSTIC, 8, -8.936686338093e-01, 1.797693134862e+308, 9.6753e+01, 6.2735e+00, - 1DIAGNOSTIC, 9, -8.954134870599e-01, 1.797693134862e+308, 1.0337e+02, 6.6138e+00, - 1DIAGNOSTIC, 10, -8.970309425381e-01, 1.824372520158e-03, 1.0905e+02, 5.6847e+00, - 1DIAGNOSTIC, 11, -8.985716887784e-01, 1.456056437273e-03, 1.1478e+02, 5.7254e+00, - 1DIAGNOSTIC, 12, -9.000388313067e-01, 1.170122023026e-03, 1.2021e+02, 5.4287e+00, - 1DIAGNOSTIC, 13, -9.014320583558e-01, 9.559874453054e-04, 1.2568e+02, 5.4720e+00, - 1DIAGNOSTIC, 14, -9.027671673772e-01, 7.997823262266e-04, 1.3109e+02, 5.4089e+00, - 1DIAGNOSTIC, 15, -9.039775068352e-01, 6.839289463325e-04, 1.3669e+02, 5.6065e+00, - 1DIAGNOSTIC, 16, -9.050410316163e-01, 5.945884232929e-04, 1.4348e+02, 6.7873e+00, - 1DIAGNOSTIC, 17, -9.059944429947e-01, 5.223482801138e-04, 1.5001e+02, 6.5324e+00, - 1DIAGNOSTIC, 18, -9.068562031185e-01, 4.588555565615e-04, 1.5632e+02, 6.3111e+00, - 1DIAGNOSTIC, 19, -9.076451837593e-01, 4.016327179807e-04, 1.6295e+02, 6.6240e+00, - 1DIAGNOSTIC, 20, -9.083721143618e-01, 3.498005741888e-04, 1.6904e+02, 6.0892e+00, - 1DIAGNOSTIC, 21, -9.088922593255e-01, 3.012794753917e-04, 1.7560e+02, 6.5674e+00, - 1DIAGNOSTIC, 22, -9.093774393809e-01, 2.570903561191e-04, 1.8217e+02, 6.5697e+00, - 1DIAGNOSTIC, 23, -9.098318596951e-01, 2.180206468966e-04, 1.8883e+02, 6.6559e+00, - 1DIAGNOSTIC, 24, -9.102623014999e-01, 1.849251244660e-04, 1.9490e+02, 6.0721e+00, - 1DIAGNOSTIC, 25, -9.106704215071e-01, 1.574999317936e-04, 2.0103e+02, 6.1240e+00, - 1DIAGNOSTIC, 26, -9.110598236301e-01, 1.349986976663e-04, 2.0742e+02, 6.3948e+00, - 1DIAGNOSTIC, 27, -9.114243644483e-01, 1.168528911957e-04, 2.1344e+02, 6.0151e+00, - 1DIAGNOSTIC, 28, -9.117739844056e-01, 1.026077863167e-04, 2.1968e+02, 6.2463e+00, - 1DIAGNOSTIC, 29, -9.121107218782e-01, 9.185854793172e-05, 2.2638e+02, 6.7023e+00, - 1DIAGNOSTIC, 30, -9.124342478194e-01, 8.419278685555e-05, 2.3298e+02, 6.5967e+00, - 1DIAGNOSTIC, 31, -9.127415800702e-01, 7.747827294389e-05, 2.3916e+02, 6.1808e+00, - 1DIAGNOSTIC, 32, -9.130383814726e-01, 7.156050107635e-05, 2.4540e+02, 6.2335e+00, - 1DIAGNOSTIC, 33, -9.133232276659e-01, 6.629062563056e-05, 2.5173e+02, 6.3316e+00, - 1DIAGNOSTIC, 34, -9.135996245811e-01, 6.160468055939e-05, 2.5821e+02, 6.4801e+00, - 1DIAGNOSTIC, 35, -9.138667817861e-01, 5.742788006359e-05, 2.6454e+02, 6.3305e+00, - 1DIAGNOSTIC, 36, -9.141203275558e-01, 5.366794839697e-05, 2.7076e+02, 6.2180e+00, - 1DIAGNOSTIC, 37, -9.143665093729e-01, 5.022474250631e-05, 2.7707e+02, 6.3131e+00, - 1DIAGNOSTIC, 38, -9.145961865168e-01, 4.700178114050e-05, 2.8390e+02, 6.8336e+00, - 1DIAGNOSTIC, 39, -9.148154817687e-01, 4.397712433407e-05, 2.9046e+02, 6.5581e+00, - 1DIAGNOSTIC, 40, -9.150258118219e-01, 4.113632353354e-05, 2.9684e+02, 6.3790e+00, - 1DIAGNOSTIC, 41, -9.152324285245e-01, 3.847936415530e-05, 3.0326e+02, 6.4192e+00, - 1DIAGNOSTIC, 42, -9.154368908706e-01, 3.605594832509e-05, 3.1004e+02, 6.7815e+00, - 1DIAGNOSTIC, 43, -9.156318407413e-01, 3.383660262483e-05, 3.1656e+02, 6.5153e+00, - 1DIAGNOSTIC, 44, -9.158155641290e-01, 3.180096187311e-05, 3.2313e+02, 6.5755e+00, - 1DIAGNOSTIC, 45, -9.159861206068e-01, 2.990340792584e-05, 3.2975e+02, 6.6170e+00, - 1DIAGNOSTIC, 46, -9.161459869522e-01, 2.808237526181e-05, 3.3628e+02, 6.5344e+00, - 1DIAGNOSTIC, 47, -9.162967710101e-01, 2.633616076208e-05, 3.4285e+02, 6.5669e+00, - 1DIAGNOSTIC, 48, -9.164432164432e-01, 2.463481482801e-05, 3.4941e+02, 6.5580e+00, - 1DIAGNOSTIC, 49, -9.165785254850e-01, 2.294951832868e-05, 3.5517e+02, 5.7593e+00, - 1DIAGNOSTIC, 50, -9.167099305734e-01, 2.131356110740e-05, 3.6096e+02, 5.7946e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.763073968532e-01, 1.797693134862e+308, 4.0831e+02, 4.7352e+01, - 1DIAGNOSTIC, 2, -8.775550002944e-01, 1.797693134862e+308, 4.5509e+02, 4.6774e+01, - 1DIAGNOSTIC, 3, -8.792294187594e-01, 1.797693134862e+308, 5.0200e+02, 4.6916e+01, - 1DIAGNOSTIC, 4, -8.809213812389e-01, 1.797693134862e+308, 5.4765e+02, 4.5651e+01, - 1DIAGNOSTIC, 5, -8.826577113796e-01, 1.797693134862e+308, 5.9364e+02, 4.5981e+01, - 1DIAGNOSTIC, 6, -8.844732238650e-01, 1.797693134862e+308, 6.3963e+02, 4.5990e+01, - 1DIAGNOSTIC, 7, -8.861710857671e-01, 1.797693134862e+308, 6.9161e+02, 5.1988e+01, - 1DIAGNOSTIC, 8, -8.875630518032e-01, 1.797693134862e+308, 7.4406e+02, 5.2449e+01, - 1DIAGNOSTIC, 9, -8.887828921322e-01, 1.797693134862e+308, 7.9725e+02, 5.3191e+01, - 1DIAGNOSTIC, 10, -8.898524432122e-01, 1.031326110051e-03, 8.4976e+02, 5.2511e+01, - 1DIAGNOSTIC, 11, -8.906698843077e-01, 8.938974406783e-04, 9.0407e+02, 5.4303e+01, - 1DIAGNOSTIC, 12, -8.913608233661e-01, 7.507267096858e-04, 9.5251e+02, 4.8442e+01, - 1DIAGNOSTIC, 13, -8.919777994546e-01, 6.181797827582e-04, 1.0044e+03, 5.1858e+01, - 1DIAGNOSTIC, 14, -8.925454608496e-01, 4.999814909259e-04, 1.0592e+03, 5.4785e+01, - 1DIAGNOSTIC, 15, -8.930563020941e-01, 3.995870670571e-04, 1.1141e+03, 5.4913e+01, - 1DIAGNOSTIC, 16, -8.935141803499e-01, 3.203346611699e-04, 1.1678e+03, 5.3768e+01, - 1DIAGNOSTIC, 17, -8.939427210790e-01, 2.608246423364e-04, 1.2200e+03, 5.2138e+01, - 1DIAGNOSTIC, 18, -8.943344589090e-01, 2.153963499182e-04, 1.2672e+03, 4.7201e+01, - 1DIAGNOSTIC, 19, -8.946948128675e-01, 1.812467097722e-04, 1.3177e+03, 5.0489e+01, - 1DIAGNOSTIC, 20, -8.950367646004e-01, 1.561791259863e-04, 1.3651e+03, 4.7414e+01, - Elapsed time (stage 2): 1365 - - -Total elapsed time: 1417 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:41 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:41 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:43 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:48 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:51 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:51 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5984 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:52 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:56 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:56 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6106 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:13:56 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/anat/sub-PNC006_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:00 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6229 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:00 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6260 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:00 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:42 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:44 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:44 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:48 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:49 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:52 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:52 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:53 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:54 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:56 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:56 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:56 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:56 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:57 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:57 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:57 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/surf/sub-PNC006_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:14:57 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:07 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:19 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02/sub-PNC006_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC006 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:19 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC006 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:19 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC006 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:20 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8776 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:22 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:22 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc/sub-PNC006_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/xfm/sub-PNC006_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 8816 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:24 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:24 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC006_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 80.367 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/logs/proc_func_18-03-2024-24581.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:15:58 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC006 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-02/QC/sub-PNC006_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/19420_micapipe_proc-func_sub-PNC006_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC006* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 80.400 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC006_ses-02 -========================reprocessing without filter=================== -sub-PNC006_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC006 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC006 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC006 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC006 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:16:17 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:16:17 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-1_bold.nii.gz is 42.000008 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:18:27 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:20:38 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:20:53 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.78 (mm) at sub-brick 2 -++ Max delta displ in automask = 0.19 (mm) at sub-brick 105 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:34:18 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:34:36 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-2_bold.nii.gz is 42.000008 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:36:45 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:38:52 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC006/ses-03/func/sub-PNC006_ses-03_task-rest_echo-3_bold.nii.gz is 42.000008 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:41:03 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -1.072 -1.641 2.638 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.2 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -1.680 -2.771 5.421 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.0 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:45:46 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:46:13 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x556fd441f6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 52.2894, -119.477] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556fd4296730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x556fd4436320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x556fd4422fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [84.9958, 113.5, -132.754] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556fd4428e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x556fd4c33230 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x556fd4c315c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 52.2894, -119.477] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556fd44253f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x556fd586d450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x556fd4c2fda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [92, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [84.9958, 113.5, -132.754] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556fd442c360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x556fd6067780 - Container manages memory: true - Size: 1601536 - Capacity: 1601536 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.602500143589e-01, 1.797693134862e+308, 4.6277e-02, 4.6277e-02, - 2DIAGNOSTIC, 2, -5.633343746277e-01, 1.797693134862e+308, 4.7467e-02, 1.1899e-03, - 2DIAGNOSTIC, 3, -5.660904376872e-01, 1.797693134862e+308, 4.8737e-02, 1.2701e-03, - 2DIAGNOSTIC, 4, -5.671333029006e-01, 1.797693134862e+308, 5.0040e-02, 1.3032e-03, - 2DIAGNOSTIC, 5, -5.680343259677e-01, 1.797693134862e+308, 5.1370e-02, 1.3299e-03, - 2DIAGNOSTIC, 6, -5.696071864579e-01, 1.797693134862e+308, 5.2702e-02, 1.3320e-03, - 2DIAGNOSTIC, 7, -5.718513526047e-01, 1.797693134862e+308, 5.4027e-02, 1.3249e-03, - 2DIAGNOSTIC, 8, -5.787173299732e-01, 1.797693134862e+308, 5.5335e-02, 1.3080e-03, - 2DIAGNOSTIC, 9, -5.938007429800e-01, 1.797693134862e+308, 5.6654e-02, 1.3189e-03, - 2DIAGNOSTIC, 10, -6.602813145975e-01, 6.765013492568e-03, 5.8612e-02, 1.9581e-03, - 2DIAGNOSTIC, 11, -6.908801460076e-01, 1.024611958920e-02, 6.0322e-02, 1.7099e-03, - 2DIAGNOSTIC, 12, -7.073783798151e-01, 1.289923713011e-02, 6.2249e-02, 1.9271e-03, - 2DIAGNOSTIC, 13, -7.122466279743e-01, 1.422328005974e-02, 6.3964e-02, 1.7152e-03, - 2DIAGNOSTIC, 14, -7.185917027493e-01, 1.428739366113e-02, 6.6125e-02, 2.1610e-03, - 2DIAGNOSTIC, 15, -7.227399800957e-01, 1.316746763515e-02, 6.7813e-02, 1.6880e-03, - 2DIAGNOSTIC, 16, -7.299486295131e-01, 1.123773642872e-02, 6.9556e-02, 1.7421e-03, - 2DIAGNOSTIC, 17, -7.284127330272e-01, 8.579545941078e-03, 7.1271e-02, 1.7159e-03, - 2DIAGNOSTIC, 18, -7.357685406415e-01, 5.839691389018e-03, 7.6890e-02, 5.6190e-03, - 2DIAGNOSTIC, 19, -7.357685349339e-01, 3.205204611911e-03, 7.8341e-02, 1.4510e-03, - 2DIAGNOSTIC, 20, -7.357686099243e-01, 2.010158725671e-03, 7.9829e-02, 1.4870e-03, - 2DIAGNOSTIC, 21, -7.357687367058e-01, 1.382750036172e-03, 8.1323e-02, 1.4949e-03, - 2DIAGNOSTIC, 22, -7.357689510157e-01, 1.014006877726e-03, 8.2777e-02, 1.4532e-03, - 2DIAGNOSTIC, 23, -7.357693131940e-01, 6.750790989641e-04, 8.4260e-02, 1.4830e-03, - 2DIAGNOSTIC, 24, -7.357699250144e-01, 4.160508699260e-04, 8.5707e-02, 1.4472e-03, - 2DIAGNOSTIC, 25, -7.357709578301e-01, 2.099300376292e-04, 8.7174e-02, 1.4670e-03, - 2DIAGNOSTIC, 26, -7.357726992767e-01, 1.214008532881e-04, 8.8711e-02, 1.5371e-03, - 2DIAGNOSTIC, 27, -7.357756297135e-01, 1.491531596232e-06, 9.0196e-02, 1.4851e-03, - 2DIAGNOSTIC, 28, -7.357805443507e-01, 1.568370016941e-06, 9.1679e-02, 1.4830e-03, - 2DIAGNOSTIC, 29, -7.357887398588e-01, 1.725584276538e-06, 9.3129e-02, 1.4501e-03, - 2DIAGNOSTIC, 30, -7.358022752867e-01, 2.008888200185e-06, 9.4585e-02, 1.4560e-03, - 2DIAGNOSTIC, 31, -7.358242686310e-01, 2.485745123217e-06, 9.6113e-02, 1.5280e-03, - 2DIAGNOSTIC, 32, -7.358590451955e-01, 3.250408303471e-06, 9.7579e-02, 1.4660e-03, - 2DIAGNOSTIC, 33, -7.359115465976e-01, 4.416651576612e-06, 9.9043e-02, 1.4639e-03, - 2DIAGNOSTIC, 34, -7.359847682932e-01, 6.078077717651e-06, 1.0054e-01, 1.4951e-03, - 2DIAGNOSTIC, 35, -7.360744961257e-01, 8.215163594727e-06, 1.0200e-01, 1.4582e-03, - 2DIAGNOSTIC, 36, -7.357701081086e-01, 6.053900945782e-06, 1.0349e-01, 1.4980e-03, - 2DIAGNOSTIC, 37, -7.358672458905e-01, 4.760547303865e-06, 1.0498e-01, 1.4861e-03, - 2DIAGNOSTIC, 38, -7.359903153894e-01, 4.494477550757e-06, 1.0643e-01, 1.4451e-03, - 2DIAGNOSTIC, 39, -7.361747604197e-01, 5.837014703847e-06, 1.0793e-01, 1.5008e-03, - 2DIAGNOSTIC, 40, -7.365179273389e-01, 1.026756793651e-05, 1.0962e-01, 1.6949e-03, - 2DIAGNOSTIC, 41, -7.368535445073e-01, 1.713725193297e-05, 1.1134e-01, 1.7180e-03, - 2DIAGNOSTIC, 42, -7.362784320624e-01, 1.682253944382e-05, 1.1307e-01, 1.7271e-03, - 2DIAGNOSTIC, 43, -7.368419302489e-01, 2.100191028815e-05, 1.1533e-01, 2.2600e-03, - 2DIAGNOSTIC, 44, -7.367242104102e-01, 2.238720195187e-05, 1.1680e-01, 1.4760e-03, - 2DIAGNOSTIC, 45, -7.369976476697e-01, 2.497166392869e-05, 1.1830e-01, 1.4951e-03, - 2DIAGNOSTIC, 46, -7.376653742909e-01, 2.830528692542e-05, 1.2022e-01, 1.9269e-03, - 2DIAGNOSTIC, 47, -7.380521585294e-01, 3.297177305550e-05, 1.2172e-01, 1.4968e-03, - 2DIAGNOSTIC, 48, -7.383145901161e-01, 3.759506199386e-05, 1.2346e-01, 1.7350e-03, - 2DIAGNOSTIC, 49, -7.414355330781e-01, 6.574483069749e-05, 1.2563e-01, 2.1698e-03, - 2DIAGNOSTIC, 50, -7.416173792499e-01, 8.996561114276e-05, 1.2735e-01, 1.7240e-03, - 2DIAGNOSTIC, 51, -7.419645864499e-01, 1.103928411113e-04, 1.2880e-01, 1.4539e-03, - 2DIAGNOSTIC, 52, -7.422074800067e-01, 1.170501463610e-04, 1.3049e-01, 1.6870e-03, - 2DIAGNOSTIC, 53, -7.425129810205e-01, 1.188968189524e-04, 1.3269e-01, 2.2030e-03, - 2DIAGNOSTIC, 54, -7.431586850229e-01, 1.129092567556e-04, 1.3500e-01, 2.3081e-03, - 2DIAGNOSTIC, 55, -7.443851021148e-01, 1.070803775898e-04, 1.3716e-01, 2.1610e-03, - 2DIAGNOSTIC, 56, -7.435715251207e-01, 9.030165129068e-05, 1.3933e-01, 2.1679e-03, - 2DIAGNOSTIC, 57, -7.432330370180e-01, 6.639964615452e-05, 1.4111e-01, 1.7829e-03, - 2DIAGNOSTIC, 58, -7.433301173649e-01, 3.904387817279e-05, 1.4262e-01, 1.5020e-03, - 2DIAGNOSTIC, 59, -7.434799692893e-01, 3.097251738500e-05, 1.4410e-01, 1.4801e-03, - 2DIAGNOSTIC, 60, -7.436934688703e-01, 2.269647171952e-05, 1.4564e-01, 1.5399e-03, - 2DIAGNOSTIC, 61, -7.463845377978e-01, 3.261836023517e-05, 1.4740e-01, 1.7681e-03, - 2DIAGNOSTIC, 62, -7.463937867712e-01, 4.046000184706e-05, 1.4962e-01, 2.2159e-03, - 2DIAGNOSTIC, 63, -7.464563303080e-01, 4.664823315335e-05, 1.5109e-01, 1.4658e-03, - 2DIAGNOSTIC, 64, -7.465498134794e-01, 5.273525621124e-05, 1.5282e-01, 1.7359e-03, - 2DIAGNOSTIC, 65, -7.444172277260e-01, 4.806799604421e-05, 1.5475e-01, 1.9250e-03, - 2DIAGNOSTIC, 66, -7.445007966032e-01, 3.474077848319e-05, 1.5647e-01, 1.7240e-03, - 2DIAGNOSTIC, 67, -7.443272634580e-01, 1.528025318387e-05, 1.5815e-01, 1.6801e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.594029286037e-01, 1.797693134862e+308, 2.1594e-01, 5.7788e-02, - 2DIAGNOSTIC, 2, -3.603157733316e-01, 1.797693134862e+308, 2.1816e-01, 2.2261e-03, - 2DIAGNOSTIC, 3, -3.626844690435e-01, 1.797693134862e+308, 2.2122e-01, 3.0510e-03, - 2DIAGNOSTIC, 4, -3.650822570318e-01, 1.797693134862e+308, 2.2411e-01, 2.8970e-03, - 2DIAGNOSTIC, 5, -3.675006975003e-01, 1.797693134862e+308, 2.2687e-01, 2.7549e-03, - 2DIAGNOSTIC, 6, -3.706358111318e-01, 1.797693134862e+308, 2.3005e-01, 3.1781e-03, - 2DIAGNOSTIC, 7, -3.713948153786e-01, 1.797693134862e+308, 2.3285e-01, 2.8019e-03, - 2DIAGNOSTIC, 8, -3.741152344121e-01, 1.797693134862e+308, 2.3678e-01, 3.9310e-03, - 2DIAGNOSTIC, 9, -3.838931062204e-01, 1.797693134862e+308, 2.3965e-01, 2.8710e-03, - 2DIAGNOSTIC, 10, -3.869715860783e-01, 4.583081567085e-03, 2.4226e-01, 2.6140e-03, - 2DIAGNOSTIC, 11, -3.887188407576e-01, 4.591271740671e-03, 2.4493e-01, 2.6691e-03, - 2DIAGNOSTIC, 12, -4.193863051529e-01, 6.156761823354e-03, 2.4758e-01, 2.6500e-03, - 2DIAGNOSTIC, 13, -4.253884672056e-01, 7.328100566905e-03, 2.5035e-01, 2.7690e-03, - 2DIAGNOSTIC, 14, -4.568320018425e-01, 9.393888836051e-03, 2.5335e-01, 2.9960e-03, - 2DIAGNOSTIC, 15, -4.884392353186e-01, 1.185700307169e-02, 2.5624e-01, 2.8870e-03, - 2DIAGNOSTIC, 16, -5.004955080737e-01, 1.350555031073e-02, 2.6199e-01, 5.7511e-03, - 2DIAGNOSTIC, 17, -4.998136124189e-01, 1.369789936114e-02, 2.6442e-01, 2.4319e-03, - 2DIAGNOSTIC, 18, -5.032352503625e-01, 1.285082386208e-02, 2.6679e-01, 2.3720e-03, - 2DIAGNOSTIC, 19, -5.132163107172e-01, 1.162711725869e-02, 2.6919e-01, 2.4009e-03, - 2DIAGNOSTIC, 20, -5.230143103169e-01, 9.890543874371e-03, 2.7157e-01, 2.3839e-03, - 2DIAGNOSTIC, 21, -5.306381691420e-01, 7.714776742873e-03, 2.7397e-01, 2.3980e-03, - 2DIAGNOSTIC, 22, -5.378404071068e-01, 6.222834511430e-03, 2.7636e-01, 2.3870e-03, - 2DIAGNOSTIC, 23, -5.569608590684e-01, 5.007078726672e-03, 2.7911e-01, 2.7540e-03, - 2DIAGNOSTIC, 24, -5.691507974119e-01, 4.583924265471e-03, 2.8506e-01, 5.9500e-03, - 2DIAGNOSTIC, 25, -5.694023175969e-01, 4.574426522490e-03, 2.8807e-01, 3.0069e-03, - 2DIAGNOSTIC, 26, -5.695871290504e-01, 4.447807501520e-03, 2.9064e-01, 2.5690e-03, - 2DIAGNOSTIC, 27, -5.696794348304e-01, 3.908058345601e-03, 2.9364e-01, 2.9991e-03, - 2DIAGNOSTIC, 28, -5.697409679622e-01, 3.117928772415e-03, 2.9662e-01, 2.9840e-03, - 2DIAGNOSTIC, 29, -5.693797311670e-01, 2.298527567461e-03, 2.9913e-01, 2.5032e-03, - 2DIAGNOSTIC, 30, -5.698018289604e-01, 1.539865762127e-03, 3.0158e-01, 2.4550e-03, - 2DIAGNOSTIC, 31, -5.706920305072e-01, 8.653951493964e-04, 3.0433e-01, 2.7511e-03, - 2DIAGNOSTIC, 32, -5.713444246363e-01, 2.994333382990e-04, 3.0806e-01, 3.7260e-03, - 2DIAGNOSTIC, 33, -5.709794568833e-01, 7.873961810777e-05, 3.1080e-01, 2.7409e-03, - 2DIAGNOSTIC, 34, -5.710284523865e-01, 7.993516577248e-05, 3.1322e-01, 2.4209e-03, - 2DIAGNOSTIC, 35, -5.711054685507e-01, 7.900363595550e-05, 3.1565e-01, 2.4309e-03, - 2DIAGNOSTIC, 36, -5.713982735399e-01, 7.797308803104e-05, 3.1843e-01, 2.7750e-03, - 2DIAGNOSTIC, 37, -5.718816801071e-01, 7.849623708369e-05, 3.2153e-01, 3.1061e-03, - 2DIAGNOSTIC, 38, -5.720397082228e-01, 7.536781061691e-05, 3.2396e-01, 2.4309e-03, - 2DIAGNOSTIC, 39, -5.720946616042e-01, 6.105798486439e-05, 3.2646e-01, 2.4989e-03, - 2DIAGNOSTIC, 40, -5.725286822278e-01, 5.392913493008e-05, 3.2893e-01, 2.4731e-03, - 2DIAGNOSTIC, 41, -5.778910134434e-01, 1.290379635108e-04, 3.3223e-01, 3.2909e-03, - 2DIAGNOSTIC, 42, -5.781183451962e-01, 1.977971076941e-04, 3.3535e-01, 3.1230e-03, - 2DIAGNOSTIC, 43, -5.798317147256e-01, 2.627864842001e-04, 3.3815e-01, 2.7971e-03, - 2DIAGNOSTIC, 44, -5.804404871149e-01, 3.084845782044e-04, 3.4671e-01, 8.5659e-03, - 2DIAGNOSTIC, 45, -5.804404861064e-01, 3.232241479390e-04, 3.4921e-01, 2.4972e-03, - 2DIAGNOSTIC, 46, -5.804405128128e-01, 3.092210721647e-04, 3.5173e-01, 2.5170e-03, - 2DIAGNOSTIC, 47, -5.804405579649e-01, 2.720327028831e-04, 3.5427e-01, 2.5480e-03, - 2DIAGNOSTIC, 48, -5.804406342934e-01, 2.132443522246e-04, 3.5718e-01, 2.9070e-03, - 2DIAGNOSTIC, 49, -5.804407632979e-01, 1.379616680793e-04, 3.5995e-01, 2.7709e-03, - 2DIAGNOSTIC, 50, -5.804409812548e-01, 5.641837734752e-05, 3.6256e-01, 2.6031e-03, - 2DIAGNOSTIC, 51, -5.804413492805e-01, 3.176840820807e-05, 3.6525e-01, 2.6901e-03, - 2DIAGNOSTIC, 52, -5.804419700768e-01, 7.198486856170e-06, 3.6781e-01, 2.5668e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.561741554202e-01, 1.797693134862e+308, 4.4150e-01, 7.3689e-02, - 2DIAGNOSTIC, 2, -4.568416531108e-01, 1.797693134862e+308, 4.5424e-01, 1.2738e-02, - 2DIAGNOSTIC, 3, -4.581892496578e-01, 1.797693134862e+308, 4.6867e-01, 1.4426e-02, - 2DIAGNOSTIC, 4, -4.595299156336e-01, 1.797693134862e+308, 4.8124e-01, 1.2578e-02, - 2DIAGNOSTIC, 5, -4.617527220038e-01, 1.797693134862e+308, 4.9388e-01, 1.2632e-02, - 2DIAGNOSTIC, 6, -4.667062839564e-01, 1.797693134862e+308, 5.0719e-01, 1.3314e-02, - 2DIAGNOSTIC, 7, -4.690281038510e-01, 1.797693134862e+308, 5.2011e-01, 1.2926e-02, - 2DIAGNOSTIC, 8, -4.695412788829e-01, 1.797693134862e+308, 5.3504e-01, 1.4922e-02, - 2DIAGNOSTIC, 9, -4.708453933850e-01, 1.797693134862e+308, 5.5012e-01, 1.5079e-02, - 2DIAGNOSTIC, 10, -4.713160158292e-01, 2.489975777840e-03, 5.6694e-01, 1.6820e-02, - 2DIAGNOSTIC, 11, -4.718094142919e-01, 2.137915821131e-03, 5.8168e-01, 1.4746e-02, - 2DIAGNOSTIC, 12, -4.722428167175e-01, 1.708383964109e-03, 5.9703e-01, 1.5348e-02, - 2DIAGNOSTIC, 13, -4.730520348152e-01, 1.295303179111e-03, 6.1145e-01, 1.4421e-02, - 2DIAGNOSTIC, 14, -4.734290679719e-01, 8.994065288012e-04, 6.2461e-01, 1.3162e-02, - 2DIAGNOSTIC, 15, -4.738161026502e-01, 5.764433189817e-04, 6.3777e-01, 1.3153e-02, - 2DIAGNOSTIC, 16, -4.742313437522e-01, 4.441314908017e-04, 6.5363e-01, 1.5864e-02, - 2DIAGNOSTIC, 17, -4.750811705758e-01, 4.000707541670e-04, 6.7357e-01, 1.9945e-02, - 2DIAGNOSTIC, 18, -4.751588787496e-01, 3.423462243533e-04, 6.8445e-01, 1.0874e-02, - 2DIAGNOSTIC, 19, -4.753759532507e-01, 3.079069627719e-04, 6.9724e-01, 1.2793e-02, - 2DIAGNOSTIC, 20, -4.754454636669e-01, 2.649906786088e-04, 7.0998e-01, 1.2738e-02, - 2DIAGNOSTIC, 21, -4.754871809289e-01, 2.169456627367e-04, 7.2133e-01, 1.1355e-02, - 2DIAGNOSTIC, 22, -4.755615168956e-01, 1.664926848391e-04, 7.3642e-01, 1.5084e-02, - 2DIAGNOSTIC, 23, -4.756675432475e-01, 1.289822611031e-04, 7.4883e-01, 1.2416e-02, - 2DIAGNOSTIC, 24, -4.758189874447e-01, 9.604607318484e-05, 7.6054e-01, 1.1710e-02, - 2DIAGNOSTIC, 25, -4.757961715564e-01, 6.558495964513e-05, 7.9550e-01, 3.4957e-02, - 2DIAGNOSTIC, 26, -4.757961715064e-01, 4.070187055059e-05, 8.0583e-01, 1.0328e-02, - 2DIAGNOSTIC, 27, -4.757961737486e-01, 3.301266510818e-05, 8.1617e-01, 1.0338e-02, - 2DIAGNOSTIC, 28, -4.757961775390e-01, 2.438679974135e-05, 8.2710e-01, 1.0931e-02, - 2DIAGNOSTIC, 29, -4.757961839455e-01, 1.861864671717e-05, 8.3853e-01, 1.1427e-02, - 2DIAGNOSTIC, 30, -4.757961947700e-01, 1.300627874108e-05, 8.5041e-01, 1.1889e-02, - 2DIAGNOSTIC, 31, -4.757962130488e-01, 7.474766014023e-06, 8.6223e-01, 1.1813e-02, - 2DIAGNOSTIC, 32, -4.757962438861e-01, 3.053034656531e-06, 8.7290e-01, 1.0668e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.091050520820e-01, 1.797693134862e+308, 1.0793e+00, 2.0639e-01, - Elapsed time (stage 0): 1.1111e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.068055664126e-01, 1.797693134862e+308, 3.9816e-02, 3.9816e-02, - 2DIAGNOSTIC, 2, -9.093862997726e-01, 1.797693134862e+308, 4.1068e-02, 1.2522e-03, - 2DIAGNOSTIC, 3, -9.130142302003e-01, 1.797693134862e+308, 4.2388e-02, 1.3201e-03, - 2DIAGNOSTIC, 4, -9.177860178489e-01, 1.797693134862e+308, 4.3661e-02, 1.2729e-03, - 2DIAGNOSTIC, 5, -9.240382292337e-01, 1.797693134862e+308, 4.4925e-02, 1.2639e-03, - 2DIAGNOSTIC, 6, -9.306950920860e-01, 1.797693134862e+308, 4.6445e-02, 1.5199e-03, - 2DIAGNOSTIC, 7, -9.405956467020e-01, 1.797693134862e+308, 4.8181e-02, 1.7362e-03, - 2DIAGNOSTIC, 8, -9.523708524722e-01, 1.797693134862e+308, 4.9697e-02, 1.5159e-03, - 2DIAGNOSTIC, 9, -9.547979108252e-01, 1.797693134862e+308, 5.1000e-02, 1.3032e-03, - 2DIAGNOSTIC, 10, -9.580247531900e-01, 3.981140107569e-03, 5.2520e-02, 1.5192e-03, - 2DIAGNOSTIC, 11, -9.624822022981e-01, 3.690890987595e-03, 5.4483e-02, 1.9631e-03, - 2DIAGNOSTIC, 12, -9.652761603215e-01, 3.249922434940e-03, 5.6219e-02, 1.7359e-03, - 2DIAGNOSTIC, 13, -9.663778243988e-01, 2.692171669807e-03, 5.7757e-02, 1.5380e-03, - 2DIAGNOSTIC, 14, -9.753033687864e-01, 2.267453505858e-03, 5.9836e-02, 2.0790e-03, - 2DIAGNOSTIC, 15, -9.787231256242e-01, 1.885620020709e-03, 6.2142e-02, 2.3060e-03, - 2DIAGNOSTIC, 16, -9.905643233003e-01, 1.723635909098e-03, 6.4663e-02, 2.5210e-03, - 2DIAGNOSTIC, 17, -9.916542335027e-01, 1.608560147609e-03, 6.6904e-02, 2.2409e-03, - 2DIAGNOSTIC, 18, -9.866638301687e-01, 1.474189857753e-03, 6.8725e-02, 1.8210e-03, - 2DIAGNOSTIC, 19, -9.874816181799e-01, 1.272099932960e-03, 7.0553e-02, 1.8280e-03, - 2DIAGNOSTIC, 20, -9.900792863914e-01, 1.055463540888e-03, 7.2152e-02, 1.5991e-03, - 2DIAGNOSTIC, 21, -9.921420486319e-01, 8.503065486458e-04, 7.3958e-02, 1.8060e-03, - 2DIAGNOSTIC, 22, -9.995649985056e-01, 7.237785238796e-04, 7.6687e-02, 2.7289e-03, - 2DIAGNOSTIC, 23, -9.998457909155e-01, 5.578684482727e-04, 7.8270e-02, 1.5831e-03, - 2DIAGNOSTIC, 24, -1.001011353729e+00, 4.805441927432e-04, 8.0019e-02, 1.7490e-03, - 2DIAGNOSTIC, 25, -1.001527851897e+00, 4.067594308827e-04, 8.1604e-02, 1.5850e-03, - 2DIAGNOSTIC, 26, -9.964940523327e-01, 3.762916995017e-04, 8.3147e-02, 1.5430e-03, - 2DIAGNOSTIC, 27, -9.961369221030e-01, 3.233681150528e-04, 8.4921e-02, 1.7741e-03, - 2DIAGNOSTIC, 28, -9.960221122657e-01, 1.900216529740e-04, 8.6473e-02, 1.5521e-03, - 2DIAGNOSTIC, 29, -9.962766568210e-01, 5.882313218719e-05, 8.8097e-02, 1.6241e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.608728579240e-01, 1.797693134862e+308, 1.3861e-01, 5.0516e-02, - 2DIAGNOSTIC, 2, -6.607522054667e-01, 1.797693134862e+308, 1.4218e-01, 3.5670e-03, - 2DIAGNOSTIC, 3, -6.635223507390e-01, 1.797693134862e+308, 1.4533e-01, 3.1481e-03, - 2DIAGNOSTIC, 4, -6.675597993951e-01, 1.797693134862e+308, 1.4774e-01, 2.4128e-03, - 2DIAGNOSTIC, 5, -6.742140839119e-01, 1.797693134862e+308, 1.5002e-01, 2.2771e-03, - 2DIAGNOSTIC, 6, -6.864283280462e-01, 1.797693134862e+308, 1.5234e-01, 2.3220e-03, - 2DIAGNOSTIC, 7, -7.230402450670e-01, 1.797693134862e+308, 1.5474e-01, 2.4011e-03, - 2DIAGNOSTIC, 8, -7.410690872800e-01, 1.797693134862e+308, 1.5788e-01, 3.1390e-03, - 2DIAGNOSTIC, 9, -7.650324025990e-01, 1.797693134862e+308, 1.6058e-01, 2.6989e-03, - 2DIAGNOSTIC, 10, -7.674386545939e-01, 1.135665327320e-02, 1.6352e-01, 2.9430e-03, - 2DIAGNOSTIC, 11, -7.685340242784e-01, 1.112012307662e-02, 1.6648e-01, 2.9571e-03, - 2DIAGNOSTIC, 12, -7.691421888965e-01, 9.943177432092e-03, 1.6950e-01, 3.0248e-03, - 2DIAGNOSTIC, 13, -7.695899366772e-01, 8.156112911539e-03, 1.7250e-01, 3.0000e-03, - 2DIAGNOSTIC, 14, -7.702222056946e-01, 6.038649454306e-03, 1.7612e-01, 3.6130e-03, - 2DIAGNOSTIC, 15, -7.705017957653e-01, 3.860938190543e-03, 1.7909e-01, 2.9740e-03, - 2DIAGNOSTIC, 16, -7.706812275179e-01, 1.910916443290e-03, 1.8175e-01, 2.6579e-03, - 2DIAGNOSTIC, 17, -7.709176509399e-01, 8.682994470677e-04, 1.8467e-01, 2.9249e-03, - 2DIAGNOSTIC, 18, -7.710748579135e-01, 2.463174445492e-04, 1.8727e-01, 2.5990e-03, - 2DIAGNOSTIC, 19, -7.712367915549e-01, 1.611719043701e-04, 1.9028e-01, 3.0081e-03, - 2DIAGNOSTIC, 20, -7.714956283929e-01, 1.212033525938e-04, 1.9325e-01, 2.9671e-03, - 2DIAGNOSTIC, 21, -7.716769857486e-01, 9.736355645350e-05, 1.9632e-01, 3.0670e-03, - 2DIAGNOSTIC, 22, -7.719499556472e-01, 8.217276046320e-05, 2.0000e-01, 3.6869e-03, - 2DIAGNOSTIC, 23, -7.719421241790e-01, 6.787880149560e-05, 2.0264e-01, 2.6379e-03, - 2DIAGNOSTIC, 24, -7.720539342731e-01, 6.049017042716e-05, 2.0530e-01, 2.6610e-03, - 2DIAGNOSTIC, 25, -7.722510147620e-01, 5.540294138369e-05, 2.0793e-01, 2.6331e-03, - 2DIAGNOSTIC, 26, -7.727432716779e-01, 5.533721324255e-05, 2.1056e-01, 2.6228e-03, - 2DIAGNOSTIC, 27, -7.732212507866e-01, 6.009119470701e-05, 2.1412e-01, 3.5639e-03, - 2DIAGNOSTIC, 28, -7.732523746795e-01, 6.144996038761e-05, 2.1799e-01, 3.8671e-03, - 2DIAGNOSTIC, 29, -7.731987199328e-01, 5.857182024767e-05, 2.2068e-01, 2.6891e-03, - 2DIAGNOSTIC, 30, -7.732129468321e-01, 5.395215875228e-05, 2.2332e-01, 2.6422e-03, - 2DIAGNOSTIC, 31, -7.732227138627e-01, 4.676834519935e-05, 2.2595e-01, 2.6262e-03, - 2DIAGNOSTIC, 32, -7.732333504590e-01, 3.900761655271e-05, 2.2859e-01, 2.6422e-03, - 2DIAGNOSTIC, 33, -7.733782402818e-01, 2.976434424046e-05, 2.3184e-01, 3.2511e-03, - 2DIAGNOSTIC, 34, -7.734294559719e-01, 2.022190619119e-05, 2.3475e-01, 2.9080e-03, - 2DIAGNOSTIC, 35, -7.734348953470e-01, 1.151959453449e-05, 2.3736e-01, 2.6109e-03, - 2DIAGNOSTIC, 36, -7.733862332808e-01, 6.842281599161e-06, 2.4025e-01, 2.8899e-03, - 2DIAGNOSTIC, 37, -7.733953726560e-01, 6.833343378886e-06, 2.4313e-01, 2.8870e-03, - 2DIAGNOSTIC, 38, -7.733486678060e-01, 6.088399354905e-06, 2.4567e-01, 2.5320e-03, - 2DIAGNOSTIC, 39, -7.733078037690e-01, 3.962266987491e-06, 2.4853e-01, 2.8670e-03, - 2DIAGNOSTIC, 40, -7.732670757791e-01, 1.424614064573e-06, 2.5115e-01, 2.6190e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.096059068805e-01, 1.797693134862e+308, 3.2145e-01, 7.0294e-02, - 2DIAGNOSTIC, 2, -6.098512388049e-01, 1.797693134862e+308, 3.3472e-01, 1.3277e-02, - 2DIAGNOSTIC, 3, -6.101598095209e-01, 1.797693134862e+308, 3.4791e-01, 1.3190e-02, - 2DIAGNOSTIC, 4, -6.105708077152e-01, 1.797693134862e+308, 3.6116e-01, 1.3242e-02, - 2DIAGNOSTIC, 5, -6.109302426666e-01, 1.797693134862e+308, 3.7428e-01, 1.3129e-02, - 2DIAGNOSTIC, 6, -6.112525265721e-01, 1.797693134862e+308, 3.8708e-01, 1.2799e-02, - 2DIAGNOSTIC, 7, -6.122331464852e-01, 1.797693134862e+308, 4.0341e-01, 1.6326e-02, - 2DIAGNOSTIC, 8, -6.125440836119e-01, 1.797693134862e+308, 4.2424e-01, 2.0829e-02, - 2DIAGNOSTIC, 9, -6.125678669851e-01, 1.797693134862e+308, 4.3867e-01, 1.4432e-02, - 2DIAGNOSTIC, 10, -6.125858237793e-01, 3.684941764037e-04, 4.5319e-01, 1.4517e-02, - 2DIAGNOSTIC, 11, -6.125987902504e-01, 3.065292133722e-04, 4.6623e-01, 1.3042e-02, - 2DIAGNOSTIC, 12, -6.126278123846e-01, 2.376690549576e-04, 4.8125e-01, 1.5019e-02, - 2DIAGNOSTIC, 13, -6.126269315048e-01, 1.687899556776e-04, 4.9689e-01, 1.5638e-02, - 2DIAGNOSTIC, 14, -6.126252009396e-01, 1.085273968072e-04, 5.0990e-01, 1.3016e-02, - 2DIAGNOSTIC, 15, -6.126401367748e-01, 5.844834449376e-05, 5.2284e-01, 1.2941e-02, - 2DIAGNOSTIC, 16, -6.126732673074e-01, 1.907213879850e-05, 5.3504e-01, 1.2194e-02, - 2DIAGNOSTIC, 17, -6.127538233503e-01, 1.149581095574e-05, 5.4714e-01, 1.2100e-02, - 2DIAGNOSTIC, 18, -6.128682560608e-01, 1.479858193938e-05, 5.5934e-01, 1.2199e-02, - 2DIAGNOSTIC, 19, -6.130449139456e-01, 2.140432090027e-05, 5.7235e-01, 1.3017e-02, - 2DIAGNOSTIC, 20, -6.134788890828e-01, 3.594332620990e-05, 5.8949e-01, 1.7133e-02, - 2DIAGNOSTIC, 21, -6.135122226522e-01, 4.669282953126e-05, 6.0362e-01, 1.4133e-02, - 2DIAGNOSTIC, 22, -6.135304246196e-01, 5.335772990715e-05, 6.1782e-01, 1.4205e-02, - 2DIAGNOSTIC, 23, -6.135513136692e-01, 5.508674699339e-05, 6.3221e-01, 1.4381e-02, - 2DIAGNOSTIC, 24, -6.135749837267e-01, 5.199266117203e-05, 6.4517e-01, 1.2960e-02, - 2DIAGNOSTIC, 25, -6.136191222841e-01, 4.536822506906e-05, 6.5934e-01, 1.4173e-02, - 2DIAGNOSTIC, 26, -6.136887258052e-01, 3.692434912016e-05, 6.7658e-01, 1.7240e-02, - 2DIAGNOSTIC, 27, -6.137218382393e-01, 2.777328377258e-05, 6.9088e-01, 1.4306e-02, - 2DIAGNOSTIC, 28, -6.137308814023e-01, 1.882888656921e-05, 7.0377e-01, 1.2889e-02, - 2DIAGNOSTIC, 29, -6.137501881530e-01, 1.178952953979e-05, 7.1798e-01, 1.4204e-02, - 2DIAGNOSTIC, 30, -6.137625441380e-01, 1.109090580158e-05, 7.3026e-01, 1.2284e-02, - 2DIAGNOSTIC, 31, -6.138232027661e-01, 1.087502792544e-05, 7.4270e-01, 1.2440e-02, - 2DIAGNOSTIC, 32, -6.138965123519e-01, 1.104131160617e-05, 7.5662e-01, 1.3921e-02, - 2DIAGNOSTIC, 33, -6.140090005575e-01, 1.211212028355e-05, 7.7235e-01, 1.5723e-02, - 2DIAGNOSTIC, 34, -6.139963114372e-01, 1.218914891420e-05, 7.8788e-01, 1.5535e-02, - 2DIAGNOSTIC, 35, -6.139919520444e-01, 1.173248925800e-05, 8.0214e-01, 1.4264e-02, - 2DIAGNOSTIC, 36, -6.140175507657e-01, 1.149781164700e-05, 8.1450e-01, 1.2360e-02, - 2DIAGNOSTIC, 37, -6.140117088579e-01, 1.057381912380e-05, 8.3130e-01, 1.6792e-02, - 2DIAGNOSTIC, 38, -6.140193476660e-01, 8.963290530545e-06, 8.4578e-01, 1.4483e-02, - 2DIAGNOSTIC, 39, -6.140165978916e-01, 6.876020834011e-06, 8.8600e-01, 4.0216e-02, - 2DIAGNOSTIC, 40, -6.140165979129e-01, 4.471245194860e-06, 9.2549e-01, 3.9493e-02, - 2DIAGNOSTIC, 41, -6.140165979129e-01, 2.505154055886e-06, 9.3959e-01, 1.4098e-02, - 2DIAGNOSTIC, 42, -6.140165979129e-01, 1.238293610092e-06, 9.5481e-01, 1.5223e-02, - 2DIAGNOSTIC, 43, -6.140165979129e-01, 1.204356661254e-06, 9.6834e-01, 1.3531e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.163679452338e-01, 1.797693134862e+308, 1.1439e+00, 1.7557e-01, - Elapsed time (stage 1): 1.1647e+00 - - -Total elapsed time: 2.2772e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:46:17 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 35 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 91 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 89.68% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 89.68% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[ 9719 2977 17533 959 839 183 0 215 1522 876 390 0 - 0 0 0 0 217 256 321 0 252 0 0 269 - 0 0 0 0 0 0 0 0 0 0 0] -[95525 29079 18769 12773 15401 9688 3185 4898 4483 5653 2220 2928 - 5379 2039 1529 1484 2102 1257 1254 1937 881 612 974 805 - 544 261 0 0 0 0 0 0 0 0 237] -[ 0 5439 1215 0 6277 1045 1576 0 0 414 0 0 - 0 5555 376 0 11201 0 0 0 8565 211 0 4462 - 177 9516 0 0 0 0 0 0 0 0 0] -[ 337 8712 23387 1117 911 0 911 226 4718 9342 1637 468 - 0 263 9033 188 1197 4627 1552 660 253 1899 3714 2407 - 9324 96208 903 720 993 688 0 734 573 4497 656] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:55:19 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:55:24 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:09 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:09 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:09 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:20 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 20:59:23 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC006 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:00:25 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:00:52 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:04:07 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:04:08 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:05:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:05:27 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x56275c26fd20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [85.4449, 113.949, -133.203] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56275c0e6730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9132efe010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x56275c273020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 52.7385, -119.927] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56275c2790c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f912f83f010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x56275c289840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [175, 243, 259] - Spacing: [1, 1, 1] - Origin: [85.4449, 113.949, -133.203] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56275c275890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f912a437010 - Container manages memory: true - Size: 11013975 - Capacity: 11013975 - - Moving image = Image (0x56275c28d3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 52.7385, -119.927] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56275c27c130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9126d78010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.173230745228e-01, 1.797693134862e+308, 2.3602e-01, 2.3602e-01, - 2DIAGNOSTIC, 2, -4.182420532872e-01, 1.797693134862e+308, 2.3740e-01, 1.3819e-03, - 2DIAGNOSTIC, 3, -4.192168358540e-01, 1.797693134862e+308, 2.3876e-01, 1.3580e-03, - 2DIAGNOSTIC, 4, -4.262646322388e-01, 1.797693134862e+308, 2.4009e-01, 1.3301e-03, - 2DIAGNOSTIC, 5, -4.540263028235e-01, 1.797693134862e+308, 2.4148e-01, 1.3900e-03, - 2DIAGNOSTIC, 6, -4.622964986765e-01, 1.797693134862e+308, 2.4290e-01, 1.4141e-03, - 2DIAGNOSTIC, 7, -4.819142318332e-01, 1.797693134862e+308, 2.4474e-01, 1.8449e-03, - 2DIAGNOSTIC, 8, -5.391819289365e-01, 1.797693134862e+308, 2.4643e-01, 1.6901e-03, - 2DIAGNOSTIC, 9, -5.763820076154e-01, 1.797693134862e+308, 2.4866e-01, 2.2330e-03, - 2DIAGNOSTIC, 10, -5.878796195878e-01, 2.497826809068e-02, 2.5531e-01, 6.6450e-03, - 2DIAGNOSTIC, 11, -5.878789594970e-01, 2.463065887161e-02, 2.5700e-01, 1.6899e-03, - 2DIAGNOSTIC, 12, -5.878798391261e-01, 2.225655247950e-02, 2.5866e-01, 1.6608e-03, - 2DIAGNOSTIC, 13, -5.878813256716e-01, 1.833851041058e-02, 2.6023e-01, 1.5662e-03, - 2DIAGNOSTIC, 14, -5.878838347355e-01, 1.365102959029e-02, 2.6184e-01, 1.6160e-03, - 2DIAGNOSTIC, 15, -5.878880642266e-01, 9.487852529323e-03, 2.6349e-01, 1.6499e-03, - 2DIAGNOSTIC, 16, -5.878951783561e-01, 5.358269504945e-03, 2.6521e-01, 1.7161e-03, - 2DIAGNOSTIC, 17, -5.879070956468e-01, 1.879935637252e-03, 2.6684e-01, 1.6310e-03, - 2DIAGNOSTIC, 18, -5.879269237523e-01, 3.490618270217e-04, 2.6852e-01, 1.6849e-03, - 2DIAGNOSTIC, 19, -5.879595719421e-01, 6.036232603729e-06, 2.7019e-01, 1.6670e-03, - 2DIAGNOSTIC, 20, -5.880128365385e-01, 8.353655768123e-06, 2.7205e-01, 1.8561e-03, - 2DIAGNOSTIC, 21, -5.880972638969e-01, 1.190900918592e-05, 2.7380e-01, 1.7540e-03, - 2DIAGNOSTIC, 22, -5.882227923148e-01, 1.715749073870e-05, 2.7553e-01, 1.7269e-03, - 2DIAGNOSTIC, 23, -5.883931011633e-01, 2.433794349806e-05, 2.7712e-01, 1.5912e-03, - 2DIAGNOSTIC, 24, -5.886004135145e-01, 3.326012965532e-05, 2.7882e-01, 1.6959e-03, - 2DIAGNOSTIC, 25, -5.888120229344e-01, 4.287995408267e-05, 2.8048e-01, 1.6692e-03, - 2DIAGNOSTIC, 26, -5.890121737415e-01, 5.191091865678e-05, 2.8216e-01, 1.6758e-03, - 2DIAGNOSTIC, 27, -5.896062191106e-01, 6.707641699219e-05, 2.8381e-01, 1.6532e-03, - 2DIAGNOSTIC, 28, -5.903590672032e-01, 8.890713540032e-05, 2.8551e-01, 1.6930e-03, - 2DIAGNOSTIC, 29, -5.913471437619e-01, 1.187697995311e-04, 2.8744e-01, 1.9369e-03, - 2DIAGNOSTIC, 30, -5.917439790790e-01, 1.429120427179e-04, 2.8908e-01, 1.6329e-03, - 2DIAGNOSTIC, 31, -5.919339382133e-01, 1.566812873045e-04, 2.9072e-01, 1.6401e-03, - 2DIAGNOSTIC, 32, -5.931086334345e-01, 1.756859999349e-04, 2.9263e-01, 1.9090e-03, - 2DIAGNOSTIC, 33, -5.963656810921e-01, 2.293434473632e-04, 2.9511e-01, 2.4841e-03, - 2DIAGNOSTIC, 34, -5.970355693882e-01, 2.697853885751e-04, 2.9676e-01, 1.6499e-03, - 2DIAGNOSTIC, 35, -5.971302475858e-01, 2.873309005810e-04, 2.9843e-01, 1.6670e-03, - 2DIAGNOSTIC, 36, -5.969158902628e-01, 2.772701206399e-04, 3.0062e-01, 2.1951e-03, - 2DIAGNOSTIC, 37, -5.952810080594e-01, 2.270398047143e-04, 3.0671e-01, 6.0849e-03, - 2DIAGNOSTIC, 38, -5.952809895694e-01, 1.676618882542e-04, 3.0837e-01, 1.6589e-03, - 2DIAGNOSTIC, 39, -5.952810428021e-01, 1.079751775886e-04, 3.1001e-01, 1.6460e-03, - 2DIAGNOSTIC, 40, -5.952811327880e-01, 4.665961661319e-05, 3.1166e-01, 1.6520e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.489156755987e-01, 1.797693134862e+308, 5.6268e-01, 2.5102e-01, - 2DIAGNOSTIC, 2, -4.498438688171e-01, 1.797693134862e+308, 5.6511e-01, 2.4240e-03, - 2DIAGNOSTIC, 3, -4.511071747703e-01, 1.797693134862e+308, 5.6746e-01, 2.3499e-03, - 2DIAGNOSTIC, 4, -4.522890359930e-01, 1.797693134862e+308, 5.6987e-01, 2.4159e-03, - 2DIAGNOSTIC, 5, -4.540898285752e-01, 1.797693134862e+308, 5.7216e-01, 2.2831e-03, - 2DIAGNOSTIC, 6, -4.559440615716e-01, 1.797693134862e+308, 5.7431e-01, 2.1541e-03, - 2DIAGNOSTIC, 7, -4.570632250372e-01, 1.797693134862e+308, 5.7743e-01, 3.1240e-03, - 2DIAGNOSTIC, 8, -4.573464942066e-01, 1.797693134862e+308, 5.7957e-01, 2.1322e-03, - 2DIAGNOSTIC, 9, -4.577462225056e-01, 1.797693134862e+308, 5.8230e-01, 2.7289e-03, - 2DIAGNOSTIC, 10, -4.582567385434e-01, 1.452226540471e-03, 5.8465e-01, 2.3580e-03, - 2DIAGNOSTIC, 11, -4.586786706437e-01, 1.174542142263e-03, 5.8730e-01, 2.6500e-03, - 2DIAGNOSTIC, 12, -4.589175314824e-01, 8.982619135976e-04, 5.9050e-01, 3.1991e-03, - 2DIAGNOSTIC, 13, -4.589273848271e-01, 6.458216107441e-04, 5.9411e-01, 3.6030e-03, - 2DIAGNOSTIC, 14, -4.590590585748e-01, 4.293273303968e-04, 5.9732e-01, 3.2110e-03, - 2DIAGNOSTIC, 15, -4.590940106632e-01, 2.773109409022e-04, 6.0083e-01, 3.5090e-03, - 2DIAGNOSTIC, 16, -4.591157343803e-01, 1.910528418408e-04, 6.0399e-01, 3.1672e-03, - 2DIAGNOSTIC, 17, -4.614443169665e-01, 2.239344271654e-04, 6.0740e-01, 3.4070e-03, - 2DIAGNOSTIC, 18, -4.660958775880e-01, 4.007556027859e-04, 6.1081e-01, 3.4130e-03, - 2DIAGNOSTIC, 19, -4.667401878048e-01, 5.520960882554e-04, 6.1380e-01, 2.9831e-03, - 2DIAGNOSTIC, 20, -4.667598632679e-01, 6.553972654936e-04, 6.1614e-01, 2.3410e-03, - 2DIAGNOSTIC, 21, -4.674654094114e-01, 7.231140792526e-04, 6.1870e-01, 2.5649e-03, - 2DIAGNOSTIC, 22, -4.676580631700e-01, 7.275693204373e-04, 6.2124e-01, 2.5399e-03, - 2DIAGNOSTIC, 23, -4.676024626966e-01, 6.601203659673e-04, 6.2411e-01, 2.8691e-03, - 2DIAGNOSTIC, 24, -4.675745503159e-01, 5.399910766556e-04, 6.2667e-01, 2.5620e-03, - 2DIAGNOSTIC, 25, -4.675377589517e-01, 3.815474185483e-04, 6.2890e-01, 2.2299e-03, - 2DIAGNOSTIC, 26, -4.675161764219e-01, 1.994407291090e-04, 6.3116e-01, 2.2531e-03, - 2DIAGNOSTIC, 27, -4.675165802435e-01, 6.262366320430e-05, 6.3370e-01, 2.5430e-03, - 2DIAGNOSTIC, 28, -4.673993960043e-01, 2.969175021512e-05, 6.3629e-01, 2.5880e-03, - 2DIAGNOSTIC, 29, -4.673752156869e-01, 9.873498544921e-06, 6.3856e-01, 2.2690e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.752228728645e-01, 1.797693134862e+308, 9.3523e-01, 2.9668e-01, - 2DIAGNOSTIC, 2, -3.758581634308e-01, 1.797693134862e+308, 9.4856e-01, 1.3322e-02, - 2DIAGNOSTIC, 3, -3.765805474921e-01, 1.797693134862e+308, 9.6375e-01, 1.5191e-02, - 2DIAGNOSTIC, 4, -3.769489596695e-01, 1.797693134862e+308, 9.7778e-01, 1.4034e-02, - 2DIAGNOSTIC, 5, -3.772810192538e-01, 1.797693134862e+308, 9.9073e-01, 1.2949e-02, - 2DIAGNOSTIC, 6, -3.789111853174e-01, 1.797693134862e+308, 1.0040e+00, 1.3278e-02, - 2DIAGNOSTIC, 7, -3.805978709339e-01, 1.797693134862e+308, 1.0179e+00, 1.3858e-02, - 2DIAGNOSTIC, 8, -3.824067500551e-01, 1.797693134862e+308, 1.0334e+00, 1.5498e-02, - 2DIAGNOSTIC, 9, -3.842328723731e-01, 1.797693134862e+308, 1.0477e+00, 1.4375e-02, - 2DIAGNOSTIC, 10, -3.881841026767e-01, 1.975214165802e-03, 1.0636e+00, 1.5827e-02, - 2DIAGNOSTIC, 11, -3.906635953112e-01, 2.224481860415e-03, 1.0791e+00, 1.5543e-02, - 2DIAGNOSTIC, 12, -3.924329850864e-01, 2.377981522743e-03, 1.1027e+00, 2.3619e-02, - 2DIAGNOSTIC, 13, -3.930372206819e-01, 2.369938003644e-03, 1.1163e+00, 1.3618e-02, - 2DIAGNOSTIC, 14, -3.937652918064e-01, 2.207814026978e-03, 1.1291e+00, 1.2801e-02, - 2DIAGNOSTIC, 15, -3.943665160252e-01, 1.909544555204e-03, 1.1421e+00, 1.2949e-02, - 2DIAGNOSTIC, 16, -3.954427923446e-01, 1.596864809955e-03, 1.1550e+00, 1.2859e-02, - 2DIAGNOSTIC, 17, -3.969297361068e-01, 1.311923454956e-03, 1.1682e+00, 1.3209e-02, - 2DIAGNOSTIC, 18, -4.034658319211e-01, 1.278614186029e-03, 1.1811e+00, 1.2927e-02, - 2DIAGNOSTIC, 19, -4.072806758356e-01, 1.339443186379e-03, 1.1980e+00, 1.6879e-02, - 2DIAGNOSTIC, 20, -4.136654907636e-01, 1.644268984301e-03, 1.2137e+00, 1.5707e-02, - 2DIAGNOSTIC, 21, -4.167219603870e-01, 1.954059232896e-03, 1.2270e+00, 1.3276e-02, - 2DIAGNOSTIC, 22, -4.209748333718e-01, 2.249756625281e-03, 1.2425e+00, 1.5511e-02, - 2DIAGNOSTIC, 23, -4.274418240642e-01, 2.525468431687e-03, 1.2645e+00, 2.2049e-02, - 2DIAGNOSTIC, 24, -4.312469334309e-01, 2.670213967203e-03, 1.2833e+00, 1.8761e-02, - 2DIAGNOSTIC, 25, -4.348008585946e-01, 2.670895930501e-03, 1.2975e+00, 1.4223e-02, - 2DIAGNOSTIC, 26, -4.427809054482e-01, 2.669707196696e-03, 1.3117e+00, 1.4225e-02, - 2DIAGNOSTIC, 27, -4.551840870093e-01, 2.773782556318e-03, 1.3253e+00, 1.3540e-02, - 2DIAGNOSTIC, 28, -4.600120544636e-01, 2.886627347263e-03, 1.3389e+00, 1.3686e-02, - 2DIAGNOSTIC, 29, -4.764953668999e-01, 3.205989196594e-03, 1.3578e+00, 1.8805e-02, - 2DIAGNOSTIC, 30, -4.794894022268e-01, 3.410771122271e-03, 1.3730e+00, 1.5281e-02, - 2DIAGNOSTIC, 31, -4.811950486310e-01, 3.385609721511e-03, 1.3886e+00, 1.5577e-02, - 2DIAGNOSTIC, 32, -4.859411846221e-01, 3.234342206588e-03, 1.4057e+00, 1.7132e-02, - 2DIAGNOSTIC, 33, -4.970576712405e-01, 3.147663244178e-03, 1.4194e+00, 1.3634e-02, - 2DIAGNOSTIC, 34, -5.252020746289e-01, 3.396615149731e-03, 1.4326e+00, 1.3229e-02, - 2DIAGNOSTIC, 35, -5.441854164043e-01, 3.723606902192e-03, 1.4475e+00, 1.4899e-02, - 2DIAGNOSTIC, 36, -5.507816269054e-01, 3.943201385787e-03, 1.4623e+00, 1.4815e-02, - 2DIAGNOSTIC, 37, -5.559321707316e-01, 4.097207763654e-03, 1.4786e+00, 1.6248e-02, - 2DIAGNOSTIC, 38, -5.602175675333e-01, 4.002110425471e-03, 1.4960e+00, 1.7400e-02, - 2DIAGNOSTIC, 39, -5.697541814385e-01, 3.959193520613e-03, 1.5113e+00, 1.5312e-02, - 2DIAGNOSTIC, 40, -5.787956662164e-01, 3.730850548027e-03, 1.5247e+00, 1.3384e-02, - 2DIAGNOSTIC, 41, -5.869529582548e-01, 3.319651359502e-03, 1.5398e+00, 1.5174e-02, - 2DIAGNOSTIC, 42, -5.888409448434e-01, 2.723601393075e-03, 1.5549e+00, 1.5081e-02, - 2DIAGNOSTIC, 43, -5.892100667708e-01, 2.068454864726e-03, 1.5680e+00, 1.3126e-02, - 2DIAGNOSTIC, 44, -5.893632124353e-01, 1.653039396926e-03, 1.5848e+00, 1.6761e-02, - 2DIAGNOSTIC, 45, -5.893917974222e-01, 1.364516735189e-03, 1.6015e+00, 1.6675e-02, - 2DIAGNOSTIC, 46, -5.893614201693e-01, 1.049364901625e-03, 1.6182e+00, 1.6704e-02, - 2DIAGNOSTIC, 47, -5.893556797751e-01, 7.200072599517e-04, 1.6332e+00, 1.5046e-02, - 2DIAGNOSTIC, 48, -5.893455641409e-01, 3.935427733558e-04, 1.6460e+00, 1.2785e-02, - 2DIAGNOSTIC, 49, -5.893975113052e-01, 1.639530061227e-04, 1.6590e+00, 1.2974e-02, - 2DIAGNOSTIC, 50, -5.895530239972e-01, 3.923337843943e-05, 1.6732e+00, 1.4215e-02, - 2DIAGNOSTIC, 51, -5.896702642549e-01, 1.413752653631e-05, 1.6884e+00, 1.5183e-02, - 2DIAGNOSTIC, 52, -5.902191155663e-01, 1.697284637732e-05, 1.7015e+00, 1.3141e-02, - 2DIAGNOSTIC, 53, -5.929324507952e-01, 5.265632458689e-05, 1.7186e+00, 1.7074e-02, - 2DIAGNOSTIC, 54, -5.937477726620e-01, 9.160420385541e-05, 1.7344e+00, 1.5807e-02, - 2DIAGNOSTIC, 55, -5.952170147183e-01, 1.363840931228e-04, 1.7481e+00, 1.3699e-02, - 2DIAGNOSTIC, 56, -5.959913297580e-01, 1.741200268046e-04, 1.7622e+00, 1.4053e-02, - 2DIAGNOSTIC, 57, -5.964583577204e-01, 1.982954563785e-04, 1.7799e+00, 1.7693e-02, - 2DIAGNOSTIC, 58, -5.966862976481e-01, 2.044317861994e-04, 1.7936e+00, 1.3724e-02, - 2DIAGNOSTIC, 59, -5.971248552726e-01, 1.955146491891e-04, 1.8093e+00, 1.5718e-02, - 2DIAGNOSTIC, 60, -5.974163567652e-01, 1.727459518565e-04, 1.8295e+00, 2.0245e-02, - 2DIAGNOSTIC, 61, -5.976449362512e-01, 1.377599075204e-04, 1.8428e+00, 1.3225e-02, - 2DIAGNOSTIC, 62, -5.977974805056e-01, 9.702380620359e-05, 1.8554e+00, 1.2646e-02, - 2DIAGNOSTIC, 63, -5.981184635662e-01, 7.626445936258e-05, 1.8717e+00, 1.6249e-02, - 2DIAGNOSTIC, 64, -5.982741401440e-01, 5.736210174341e-05, 1.8846e+00, 1.2970e-02, - 2DIAGNOSTIC, 65, -5.984173241937e-01, 4.769151948888e-05, 1.8994e+00, 1.4786e-02, - 2DIAGNOSTIC, 66, -5.989407331691e-01, 4.497291132517e-05, 1.9179e+00, 1.8491e-02, - 2DIAGNOSTIC, 67, -5.992643041553e-01, 4.467355569639e-05, 1.9327e+00, 1.4752e-02, - 2DIAGNOSTIC, 68, -5.994659688661e-01, 4.361218962258e-05, 1.9480e+00, 1.5349e-02, - 2DIAGNOSTIC, 69, -5.994365847110e-01, 4.178400011604e-05, 1.9625e+00, 1.4506e-02, - 2DIAGNOSTIC, 70, -5.994303316429e-01, 3.837585919869e-05, 1.9773e+00, 1.4789e-02, - 2DIAGNOSTIC, 71, -5.994496827732e-01, 3.335653307368e-05, 1.9943e+00, 1.7023e-02, - 2DIAGNOSTIC, 72, -5.994842496923e-01, 2.668554235059e-05, 2.0093e+00, 1.5005e-02, - 2DIAGNOSTIC, 73, -5.994258751993e-01, 1.972167094284e-05, 2.0263e+00, 1.6957e-02, - 2DIAGNOSTIC, 74, -5.994152794845e-01, 1.229316958041e-05, 2.0411e+00, 1.4804e-02, - 2DIAGNOSTIC, 75, -5.994036775796e-01, 4.879999023790e-06, 2.0541e+00, 1.2988e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.080311336104e-01, 1.797693134862e+308, 2.5181e+00, 4.6398e-01, - 2DIAGNOSTIC, 2, -5.081909509682e-01, 1.797693134862e+308, 2.6089e+00, 9.0878e-02, - 2DIAGNOSTIC, 3, -5.082316546213e-01, 1.797693134862e+308, 2.7157e+00, 1.0675e-01, - 2DIAGNOSTIC, 4, -5.082786280395e-01, 1.797693134862e+308, 2.8248e+00, 1.0913e-01, - 2DIAGNOSTIC, 5, -5.082906395127e-01, 1.797693134862e+308, 2.9342e+00, 1.0936e-01, - 2DIAGNOSTIC, 6, -5.083047431460e-01, 1.797693134862e+308, 3.0265e+00, 9.2357e-02, - 2DIAGNOSTIC, 7, -5.083906256921e-01, 1.797693134862e+308, 3.1166e+00, 9.0056e-02, - 2DIAGNOSTIC, 8, -5.085809839035e-01, 1.797693134862e+308, 3.2540e+00, 1.3743e-01, - 2DIAGNOSTIC, 9, -5.088850521441e-01, 1.797693134862e+308, 3.3803e+00, 1.2631e-01, - 2DIAGNOSTIC, 10, -5.089088709572e-01, 1.029086348789e-04, 3.4918e+00, 1.1149e-01, - 2DIAGNOSTIC, 11, -5.089062913738e-01, 9.855178922012e-05, 3.6026e+00, 1.1079e-01, - 2DIAGNOSTIC, 12, -5.089131056541e-01, 9.423182302987e-05, 3.7133e+00, 1.1070e-01, - 2DIAGNOSTIC, 13, -5.089119480952e-01, 8.377293873016e-05, 3.8566e+00, 1.4327e-01, - 2DIAGNOSTIC, 14, -5.089100630328e-01, 6.903800385409e-05, 3.9858e+00, 1.2918e-01, - 2DIAGNOSTIC, 15, -5.089083372327e-01, 5.064493385744e-05, 4.0973e+00, 1.1157e-01, - 2DIAGNOSTIC, 16, -5.089076810305e-01, 3.073774367988e-05, 4.2069e+00, 1.0957e-01, - 2DIAGNOSTIC, 17, -5.089056043580e-01, 1.323156007440e-05, 4.2960e+00, 8.9054e-02, - 2DIAGNOSTIC, 18, -5.089066258963e-01, 2.300862162269e-06, 4.4034e+00, 1.0740e-01, - 2DIAGNOSTIC, 19, -5.089067330987e-01, 1.398909467799e-06, 4.4977e+00, 9.4351e-02, - 2DIAGNOSTIC, 20, -5.089097883496e-01, 1.367867872616e-06, 4.6071e+00, 1.0938e-01, - 2DIAGNOSTIC, 21, -5.089082193093e-01, 1.242656873457e-06, 4.7162e+00, 1.0907e-01, - 2DIAGNOSTIC, 22, -5.089081983911e-01, 1.329355360097e-06, 4.8260e+00, 1.0982e-01, - 2DIAGNOSTIC, 23, -5.089078136514e-01, 1.383086201470e-06, 4.9492e+00, 1.2319e-01, - 2DIAGNOSTIC, 24, -5.089069066526e-01, 1.366827719750e-06, 5.0541e+00, 1.0491e-01, - 2DIAGNOSTIC, 25, -5.089059936780e-01, 1.288736459278e-06, 5.1632e+00, 1.0914e-01, - 2DIAGNOSTIC, 26, -5.089050253318e-01, 1.182354362105e-06, 5.2585e+00, 9.5260e-02, - 2DIAGNOSTIC, 27, -5.089029740430e-01, 1.003008233302e-06, 5.3676e+00, 1.0907e-01, - Elapsed time (stage 0): 5.5121e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.233706174549e-01, 1.797693134862e+308, 2.1110e-01, 2.1110e-01, - 2DIAGNOSTIC, 2, -8.257190956398e-01, 1.797693134862e+308, 2.1236e-01, 1.2619e-03, - 2DIAGNOSTIC, 3, -8.288587557512e-01, 1.797693134862e+308, 2.1362e-01, 1.2531e-03, - 2DIAGNOSTIC, 4, -8.340107205814e-01, 1.797693134862e+308, 2.1491e-01, 1.2889e-03, - 2DIAGNOSTIC, 5, -8.404771390492e-01, 1.797693134862e+308, 2.1620e-01, 1.2939e-03, - 2DIAGNOSTIC, 6, -8.752850125561e-01, 1.797693134862e+308, 2.1789e-01, 1.6921e-03, - 2DIAGNOSTIC, 7, -8.963213383532e-01, 1.797693134862e+308, 2.2082e-01, 2.9299e-03, - 2DIAGNOSTIC, 8, -8.988502488414e-01, 1.797693134862e+308, 2.2212e-01, 1.2941e-03, - 2DIAGNOSTIC, 9, -9.039128479959e-01, 1.797693134862e+308, 2.2348e-01, 1.3640e-03, - 2DIAGNOSTIC, 10, -9.099085315409e-01, 7.862441798580e-03, 2.2533e-01, 1.8542e-03, - 2DIAGNOSTIC, 11, -9.172267051107e-01, 7.205437564499e-03, 2.2695e-01, 1.6119e-03, - 2DIAGNOSTIC, 12, -9.276565787475e-01, 6.348421680073e-03, 2.2869e-01, 1.7412e-03, - 2DIAGNOSTIC, 13, -9.409359599171e-01, 5.469260136622e-03, 2.3067e-01, 1.9839e-03, - 2DIAGNOSTIC, 14, -9.643781726803e-01, 4.885396308003e-03, 2.3245e-01, 1.7750e-03, - 2DIAGNOSTIC, 15, -9.704277652885e-01, 4.181913958971e-03, 2.3411e-01, 1.6670e-03, - 2DIAGNOSTIC, 16, -9.715674180938e-01, 3.898403093395e-03, 2.3587e-01, 1.7600e-03, - 2DIAGNOSTIC, 17, -9.723842349618e-01, 3.704454700587e-03, 2.3747e-01, 1.5979e-03, - 2DIAGNOSTIC, 18, -9.759419412770e-01, 3.294971264407e-03, 2.3903e-01, 1.5631e-03, - 2DIAGNOSTIC, 19, -9.760177125578e-01, 2.705058987273e-03, 2.4070e-01, 1.6658e-03, - 2DIAGNOSTIC, 20, -9.754740687053e-01, 2.012990927894e-03, 2.4254e-01, 1.8392e-03, - 2DIAGNOSTIC, 21, -9.765204329165e-01, 1.332241651269e-03, 2.4390e-01, 1.3571e-03, - 2DIAGNOSTIC, 22, -9.778398892180e-01, 7.579901174443e-04, 2.4550e-01, 1.6019e-03, - 2DIAGNOSTIC, 23, -9.809044940180e-01, 3.765875730843e-04, 2.4699e-01, 1.4939e-03, - 2DIAGNOSTIC, 24, -9.804513312217e-01, 2.862139666847e-04, 2.4920e-01, 2.2099e-03, - 2DIAGNOSTIC, 25, -9.815140679813e-01, 2.655962994407e-04, 2.5086e-01, 1.6541e-03, - 2DIAGNOSTIC, 26, -9.814721046643e-01, 2.349716919976e-04, 2.5237e-01, 1.5109e-03, - 2DIAGNOSTIC, 27, -9.829554958417e-01, 2.092255664147e-04, 2.5398e-01, 1.6150e-03, - 2DIAGNOSTIC, 28, -9.830936316639e-01, 2.053420520023e-04, 2.5549e-01, 1.5070e-03, - 2DIAGNOSTIC, 29, -9.827148114078e-01, 1.798958462313e-04, 2.5718e-01, 1.6968e-03, - 2DIAGNOSTIC, 30, -9.821684156828e-01, 1.288890590767e-04, 2.5850e-01, 1.3180e-03, - 2DIAGNOSTIC, 31, -9.817445638528e-01, 7.531967427441e-05, 2.6004e-01, 1.5380e-03, - 2DIAGNOSTIC, 32, -9.805798639241e-01, 1.873232506849e-05, 2.6159e-01, 1.5490e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.520799650880e-01, 1.797693134862e+308, 4.7908e-01, 2.1749e-01, - 2DIAGNOSTIC, 2, -8.535679760991e-01, 1.797693134862e+308, 4.8110e-01, 2.0120e-03, - 2DIAGNOSTIC, 3, -8.553152207496e-01, 1.797693134862e+308, 4.8303e-01, 1.9360e-03, - 2DIAGNOSTIC, 4, -8.576091505292e-01, 1.797693134862e+308, 4.8501e-01, 1.9779e-03, - 2DIAGNOSTIC, 5, -8.616489802589e-01, 1.797693134862e+308, 4.8708e-01, 2.0649e-03, - 2DIAGNOSTIC, 6, -8.657531013993e-01, 1.797693134862e+308, 4.8957e-01, 2.4939e-03, - 2DIAGNOSTIC, 7, -8.711950169547e-01, 1.797693134862e+308, 4.9237e-01, 2.7981e-03, - 2DIAGNOSTIC, 8, -8.727959201390e-01, 1.797693134862e+308, 4.9481e-01, 2.4400e-03, - 2DIAGNOSTIC, 9, -8.729726824890e-01, 1.797693134862e+308, 4.9693e-01, 2.1210e-03, - 2DIAGNOSTIC, 10, -8.730033078864e-01, 1.884638135877e-03, 4.9925e-01, 2.3198e-03, - 2DIAGNOSTIC, 11, -8.733964307634e-01, 1.562161355835e-03, 5.0167e-01, 2.4221e-03, - 2DIAGNOSTIC, 12, -8.741039920633e-01, 1.212137877258e-03, 5.0443e-01, 2.7552e-03, - 2DIAGNOSTIC, 13, -8.752868238425e-01, 8.808969614559e-04, 5.0689e-01, 2.4650e-03, - 2DIAGNOSTIC, 14, -8.809105418407e-01, 7.027077066349e-04, 5.0952e-01, 2.6329e-03, - 2DIAGNOSTIC, 15, -8.812116415971e-01, 5.759205761421e-04, 5.1313e-01, 3.6061e-03, - 2DIAGNOSTIC, 16, -8.819468895531e-01, 5.102209892465e-04, 5.1580e-01, 2.6660e-03, - 2DIAGNOSTIC, 17, -8.819210644884e-01, 5.099823780833e-04, 5.1821e-01, 2.4159e-03, - 2DIAGNOSTIC, 18, -8.821003133782e-01, 4.946574699309e-04, 5.2060e-01, 2.3870e-03, - 2DIAGNOSTIC, 19, -8.824302086763e-01, 4.426707117378e-04, 5.2321e-01, 2.6138e-03, - 2DIAGNOSTIC, 20, -8.827561110298e-01, 3.604743068783e-04, 5.2562e-01, 2.4040e-03, - 2DIAGNOSTIC, 21, -8.828087192793e-01, 2.607909198542e-04, 5.2899e-01, 3.3720e-03, - 2DIAGNOSTIC, 22, -8.832495819988e-01, 1.637253710681e-04, 5.3141e-01, 2.4261e-03, - 2DIAGNOSTIC, 23, -8.836567612318e-01, 8.031137849317e-05, 5.3413e-01, 2.7130e-03, - 2DIAGNOSTIC, 24, -8.838094650527e-01, 7.466299888657e-05, 5.3689e-01, 2.7609e-03, - 2DIAGNOSTIC, 25, -8.837595937267e-01, 6.562765195593e-05, 5.3936e-01, 2.4672e-03, - 2DIAGNOSTIC, 26, -8.836888444801e-01, 5.973394071925e-05, 5.4188e-01, 2.5220e-03, - 2DIAGNOSTIC, 27, -8.838994534222e-01, 5.098337517787e-05, 5.4463e-01, 2.7499e-03, - 2DIAGNOSTIC, 28, -8.839360354913e-01, 4.042400906226e-05, 5.4732e-01, 2.6951e-03, - 2DIAGNOSTIC, 29, -8.838255615239e-01, 2.929168257503e-05, 5.5061e-01, 3.2890e-03, - 2DIAGNOSTIC, 30, -8.839006082721e-01, 2.077725377450e-05, 5.5334e-01, 2.7251e-03, - 2DIAGNOSTIC, 31, -8.841310495160e-01, 1.383591296687e-05, 5.5575e-01, 2.4161e-03, - 2DIAGNOSTIC, 32, -8.844932498087e-01, 1.404157154582e-05, 5.5814e-01, 2.3851e-03, - 2DIAGNOSTIC, 33, -8.858356459598e-01, 3.005672381265e-05, 5.6088e-01, 2.7430e-03, - 2DIAGNOSTIC, 34, -8.862919700898e-01, 4.792898147368e-05, 5.6354e-01, 2.6581e-03, - 2DIAGNOSTIC, 35, -8.856313920296e-01, 5.384492242757e-05, 5.6717e-01, 3.6280e-03, - 2DIAGNOSTIC, 36, -8.856493556162e-01, 5.422204092661e-05, 5.6988e-01, 2.7082e-03, - 2DIAGNOSTIC, 37, -8.854936628450e-01, 4.986094420993e-05, 5.7221e-01, 2.3320e-03, - 2DIAGNOSTIC, 38, -8.855849706890e-01, 4.195167079625e-05, 5.7468e-01, 2.4700e-03, - 2DIAGNOSTIC, 39, -8.860061057020e-01, 3.304728834104e-05, 5.7721e-01, 2.5351e-03, - 2DIAGNOSTIC, 40, -8.861877896576e-01, 2.372247940351e-05, 5.8004e-01, 2.8250e-03, - 2DIAGNOSTIC, 41, -8.863796796865e-01, 1.614010683303e-05, 5.8359e-01, 3.5489e-03, - 2DIAGNOSTIC, 42, -8.859164575556e-01, 6.385357866848e-06, 5.8644e-01, 2.8579e-03, - 2DIAGNOSTIC, 43, -8.861347621074e-01, 8.255170794176e-06, 5.8922e-01, 2.7730e-03, - 2DIAGNOSTIC, 44, -8.859914769264e-01, 1.162104023483e-05, 5.9194e-01, 2.7189e-03, - 2DIAGNOSTIC, 45, -8.858349931652e-01, 7.872792058720e-06, 5.9432e-01, 2.3830e-03, - 2DIAGNOSTIC, 46, -8.858915831049e-01, 4.244094426301e-06, 5.9663e-01, 2.3131e-03, - 2DIAGNOSTIC, 47, -8.861519862700e-01, 1.191721562648e-06, 5.9899e-01, 2.3561e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.375881160308e-01, 1.797693134862e+308, 8.5302e-01, 2.5403e-01, - 2DIAGNOSTIC, 2, -7.384466831466e-01, 1.797693134862e+308, 8.6817e-01, 1.5149e-02, - 2DIAGNOSTIC, 3, -7.394575600395e-01, 1.797693134862e+308, 8.8282e-01, 1.4658e-02, - 2DIAGNOSTIC, 4, -7.412416574209e-01, 1.797693134862e+308, 8.9938e-01, 1.6560e-02, - 2DIAGNOSTIC, 5, -7.425826037455e-01, 1.797693134862e+308, 9.1371e-01, 1.4327e-02, - 2DIAGNOSTIC, 6, -7.439394617862e-01, 1.797693134862e+308, 9.2996e-01, 1.6249e-02, - 2DIAGNOSTIC, 7, -7.459203554550e-01, 1.797693134862e+308, 9.4675e-01, 1.6792e-02, - 2DIAGNOSTIC, 8, -7.471845136153e-01, 1.797693134862e+308, 9.6362e-01, 1.6864e-02, - 2DIAGNOSTIC, 9, -7.488836553252e-01, 1.797693134862e+308, 9.8188e-01, 1.8260e-02, - 2DIAGNOSTIC, 10, -7.494786729033e-01, 1.105733515221e-03, 9.9629e-01, 1.4410e-02, - 2DIAGNOSTIC, 11, -7.504801895204e-01, 9.969734290638e-04, 1.0104e+00, 1.4128e-02, - 2DIAGNOSTIC, 12, -7.512787907751e-01, 8.693230992657e-04, 1.0259e+00, 1.5527e-02, - 2DIAGNOSTIC, 13, -7.517294184696e-01, 7.246744116145e-04, 1.0396e+00, 1.3657e-02, - 2DIAGNOSTIC, 14, -7.524015983476e-01, 6.017918378124e-04, 1.0548e+00, 1.5196e-02, - 2DIAGNOSTIC, 15, -7.531323535482e-01, 4.929117202400e-04, 1.0716e+00, 1.6835e-02, - 2DIAGNOSTIC, 16, -7.535600734861e-01, 3.942340146880e-04, 1.0852e+00, 1.3562e-02, - 2DIAGNOSTIC, 17, -7.543202310936e-01, 3.321016729595e-04, 1.1002e+00, 1.5015e-02, - 2DIAGNOSTIC, 18, -7.547568533169e-01, 2.814507847332e-04, 1.1201e+00, 1.9848e-02, - 2DIAGNOSTIC, 19, -7.547657254213e-01, 2.443536581692e-04, 1.1360e+00, 1.5970e-02, - 2DIAGNOSTIC, 20, -7.547483660452e-01, 1.992240185142e-04, 1.1494e+00, 1.3400e-02, - 2DIAGNOSTIC, 21, -7.547556623121e-01, 1.580536404917e-04, 1.1628e+00, 1.3337e-02, - 2DIAGNOSTIC, 22, -7.547722364985e-01, 1.199487352184e-04, 1.1779e+00, 1.5137e-02, - 2DIAGNOSTIC, 23, -7.547865520909e-01, 8.153100962004e-05, 1.1932e+00, 1.5335e-02, - 2DIAGNOSTIC, 24, -7.548276583461e-01, 5.001736497665e-05, 1.2069e+00, 1.3685e-02, - 2DIAGNOSTIC, 25, -7.548387293422e-01, 2.777629854191e-05, 1.2209e+00, 1.3945e-02, - 2DIAGNOSTIC, 26, -7.549457933519e-01, 1.232798920843e-05, 1.2388e+00, 1.7928e-02, - 2DIAGNOSTIC, 27, -7.549737402979e-01, 7.832864238576e-06, 1.2548e+00, 1.5993e-02, - 2DIAGNOSTIC, 28, -7.548914601634e-01, 7.826869746291e-06, 1.2724e+00, 1.7634e-02, - 2DIAGNOSTIC, 29, -7.548765308587e-01, 7.169912020551e-06, 1.2903e+00, 1.7843e-02, - 2DIAGNOSTIC, 30, -7.548410448046e-01, 5.308515877531e-06, 1.3059e+00, 1.5620e-02, - 2DIAGNOSTIC, 31, -7.548421336636e-01, 3.243293787224e-06, 1.3240e+00, 1.8138e-02, - 2DIAGNOSTIC, 32, -7.548246768520e-01, 1.076078690980e-06, 1.3385e+00, 1.4434e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.223210909254e-01, 1.797693134862e+308, 1.8049e+00, 4.6644e-01, - 2DIAGNOSTIC, 2, -6.231353845446e-01, 1.797693134862e+308, 1.9135e+00, 1.0862e-01, - 2DIAGNOSTIC, 3, -6.241800396268e-01, 1.797693134862e+308, 2.0174e+00, 1.0393e-01, - 2DIAGNOSTIC, 4, -6.252199517931e-01, 1.797693134862e+308, 2.1231e+00, 1.0564e-01, - 2DIAGNOSTIC, 5, -6.260447021287e-01, 1.797693134862e+308, 2.2286e+00, 1.0552e-01, - 2DIAGNOSTIC, 6, -6.266492246856e-01, 1.797693134862e+308, 2.3497e+00, 1.2112e-01, - 2DIAGNOSTIC, 7, -6.268275387278e-01, 1.797693134862e+308, 2.5078e+00, 1.5803e-01, - 2DIAGNOSTIC, 8, -6.270610524342e-01, 1.797693134862e+308, 2.6127e+00, 1.0495e-01, - 2DIAGNOSTIC, 9, -6.271848527038e-01, 1.797693134862e+308, 2.7156e+00, 1.0292e-01, - 2DIAGNOSTIC, 10, -6.274080350599e-01, 5.255235724739e-04, 2.8139e+00, 9.8246e-02, - 2DIAGNOSTIC, 11, -6.277206203711e-01, 3.863982854337e-04, 2.9578e+00, 1.4393e-01, - 2DIAGNOSTIC, 12, -6.279206608734e-01, 2.739768379115e-04, 3.0502e+00, 9.2374e-02, - 2DIAGNOSTIC, 13, -6.280965903975e-01, 1.965552263839e-04, 3.1553e+00, 1.0508e-01, - 2DIAGNOSTIC, 14, -6.286695681867e-01, 1.643908825961e-04, 3.3297e+00, 1.7443e-01, - 2DIAGNOSTIC, 15, -6.287904783560e-01, 1.494923427309e-04, 3.4370e+00, 1.0732e-01, - 2DIAGNOSTIC, 16, -6.292002041301e-01, 1.516729242917e-04, 3.5736e+00, 1.3655e-01, - 2DIAGNOSTIC, 17, -6.292329974987e-01, 1.452446508004e-04, 3.7110e+00, 1.3745e-01, - 2DIAGNOSTIC, 18, -6.292246396899e-01, 1.320713924056e-04, 3.9072e+00, 1.9620e-01, - 2DIAGNOSTIC, 19, -6.292238448041e-01, 1.110841995357e-04, 4.0236e+00, 1.1641e-01, - 2DIAGNOSTIC, 20, -6.292230342249e-01, 8.687347844270e-05, 4.1479e+00, 1.2431e-01, - 2DIAGNOSTIC, 21, -6.292220995762e-01, 6.371632140004e-05, 4.2561e+00, 1.0812e-01, - 2DIAGNOSTIC, 22, -6.292217558256e-01, 4.101300695802e-05, 4.3805e+00, 1.2441e-01, - 2DIAGNOSTIC, 23, -6.292232132902e-01, 1.991874505169e-05, 4.5740e+00, 1.9350e-01, - 2DIAGNOSTIC, 24, -6.292233685948e-01, 9.703763699277e-06, 4.6793e+00, 1.0538e-01, - 2DIAGNOSTIC, 25, -6.292199915513e-01, 1.443212645245e-06, 4.7983e+00, 1.1898e-01, - Elapsed time (stage 1): 4.9460e+00 - - -Total elapsed time: 1.0462e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:05:41 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:05:41 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5568519ab4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 52.7385, -119.927] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5568519b0fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2fda841010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5568519ac850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 52.7385, -119.927] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5568519a9f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2fd7182010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5568519c3b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 52.7385, -119.927] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5568519b0550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2fd3ac3010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5568519c8d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 52.7385, -119.927] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5568519c6c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2fd0404010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x5568519caf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 52.7385, -119.927] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5568519c93a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2fccd45010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5568519cb540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 52.7385, -119.927] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5568519cb4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f2fc9686010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.909275224205e-01, 1.797693134862e+308, 2.1663e-01, 2.1663e-01, - 2DIAGNOSTIC, 2, -6.935368208863e-01, 1.797693134862e+308, 2.1868e-01, 2.0530e-03, - 2DIAGNOSTIC, 3, -6.968929257794e-01, 1.797693134862e+308, 2.2071e-01, 2.0318e-03, - 2DIAGNOSTIC, 4, -7.021388695523e-01, 1.797693134862e+308, 2.2272e-01, 2.0070e-03, - 2DIAGNOSTIC, 5, -7.070595849682e-01, 1.797693134862e+308, 2.2471e-01, 1.9879e-03, - 2DIAGNOSTIC, 6, -7.109592454735e-01, 1.797693134862e+308, 2.2672e-01, 2.0158e-03, - 2DIAGNOSTIC, 7, -7.125741344066e-01, 1.797693134862e+308, 2.2875e-01, 2.0311e-03, - 2DIAGNOSTIC, 8, -7.139258326340e-01, 1.797693134862e+308, 2.3077e-01, 2.0199e-03, - 2DIAGNOSTIC, 9, -7.145340010048e-01, 1.797693134862e+308, 2.3336e-01, 2.5890e-03, - 2DIAGNOSTIC, 10, -7.142391436103e-01, 2.384637242566e-03, 2.3589e-01, 2.5311e-03, - 2DIAGNOSTIC, 11, -7.139411666726e-01, 1.748721088374e-03, 2.3835e-01, 2.4581e-03, - 2DIAGNOSTIC, 12, -7.144076877481e-01, 1.166899771952e-03, 2.4099e-01, 2.6360e-03, - 2DIAGNOSTIC, 13, -7.147833900091e-01, 6.831858895008e-04, 2.4588e-01, 4.8969e-03, - 2DIAGNOSTIC, 14, -7.154047517825e-01, 3.729618964879e-04, 2.4873e-01, 2.8479e-03, - 2DIAGNOSTIC, 15, -7.156178353165e-01, 2.059921188224e-04, 2.5169e-01, 2.9559e-03, - 2DIAGNOSTIC, 16, -7.156720999868e-01, 1.402336309321e-04, 2.5417e-01, 2.4800e-03, - 2DIAGNOSTIC, 17, -7.155948756371e-01, 1.050069498455e-04, 2.5635e-01, 2.1861e-03, - 2DIAGNOSTIC, 18, -7.158184158810e-01, 9.857310334608e-05, 2.5846e-01, 2.1050e-03, - 2DIAGNOSTIC, 19, -7.159039223708e-01, 9.832580033749e-05, 2.6061e-01, 2.1470e-03, - 2DIAGNOSTIC, 20, -7.162715389569e-01, 9.084260813114e-05, 2.6271e-01, 2.1081e-03, - 2DIAGNOSTIC, 21, -7.165152466814e-01, 7.461886854813e-05, 2.6534e-01, 2.6231e-03, - 2DIAGNOSTIC, 22, -7.165461815010e-01, 6.208430901807e-05, 2.6785e-01, 2.5091e-03, - 2DIAGNOSTIC, 23, -7.168838176242e-01, 5.719231399365e-05, 2.7175e-01, 3.9060e-03, - 2DIAGNOSTIC, 24, -7.168907470805e-01, 5.767750175464e-05, 2.7557e-01, 3.8209e-03, - 2DIAGNOSTIC, 25, -7.169039672888e-01, 5.641855512871e-05, 2.7831e-01, 2.7390e-03, - 2DIAGNOSTIC, 26, -7.169260444298e-01, 5.133546602557e-05, 2.8087e-01, 2.5620e-03, - 2DIAGNOSTIC, 27, -7.176158251362e-01, 5.092908065302e-05, 2.8374e-01, 2.8701e-03, - 2DIAGNOSTIC, 28, -7.187597507648e-01, 6.506938670341e-05, 2.8703e-01, 3.2911e-03, - 2DIAGNOSTIC, 29, -7.189042287539e-01, 7.490495665240e-05, 2.8965e-01, 2.6109e-03, - 2DIAGNOSTIC, 30, -7.186023034105e-01, 7.823598699494e-05, 2.9222e-01, 2.5740e-03, - 2DIAGNOSTIC, 31, -7.184903040851e-01, 7.611836228983e-05, 2.9443e-01, 2.2061e-03, - 2DIAGNOSTIC, 32, -7.191457623502e-01, 7.527388044774e-05, 2.9698e-01, 2.5570e-03, - 2DIAGNOSTIC, 33, -7.190136490536e-01, 6.935077858942e-05, 3.0050e-01, 3.5131e-03, - 2DIAGNOSTIC, 34, -7.188891911427e-01, 5.609218048024e-05, 3.0328e-01, 2.7821e-03, - 2DIAGNOSTIC, 35, -7.189282795143e-01, 3.945282109221e-05, 3.0561e-01, 2.3348e-03, - 2DIAGNOSTIC, 36, -7.188182002367e-01, 1.902044986360e-05, 3.0807e-01, 2.4540e-03, - 2DIAGNOSTIC, 37, -7.188457614010e-01, 5.213335785625e-06, 3.1057e-01, 2.5041e-03, - 2DIAGNOSTIC, 38, -7.188933152864e-01, 4.089161462488e-06, 3.1307e-01, 2.5032e-03, - 2DIAGNOSTIC, 39, -7.189696585706e-01, 5.146568881623e-06, 3.1569e-01, 2.6109e-03, - 2DIAGNOSTIC, 40, -7.195471277794e-01, 8.558404601233e-06, 3.1887e-01, 3.1819e-03, - 2DIAGNOSTIC, 41, -7.194408597827e-01, 8.599134600128e-06, 3.2149e-01, 2.6231e-03, - 2DIAGNOSTIC, 42, -7.194920840208e-01, 1.471536785800e-05, 3.2404e-01, 2.5530e-03, - 2DIAGNOSTIC, 43, -7.201612139243e-01, 2.424919405656e-05, 3.3116e-01, 7.1139e-03, - 2DIAGNOSTIC, 44, -7.201612134389e-01, 2.974147435896e-05, 3.3321e-01, 2.0521e-03, - 2DIAGNOSTIC, 45, -7.201612247204e-01, 3.259006249066e-05, 3.3527e-01, 2.0599e-03, - 2DIAGNOSTIC, 46, -7.201612437933e-01, 3.141123699611e-05, 3.3733e-01, 2.0578e-03, - 2DIAGNOSTIC, 47, -7.201612760341e-01, 2.762685999200e-05, 3.3937e-01, 2.0399e-03, - 2DIAGNOSTIC, 48, -7.201613305205e-01, 2.174510885918e-05, 3.4140e-01, 2.0380e-03, - 2DIAGNOSTIC, 49, -7.201614225741e-01, 1.454705548586e-05, 3.4345e-01, 2.0471e-03, - 2DIAGNOSTIC, 50, -7.201615783252e-01, 1.101191467995e-05, 3.4549e-01, 2.0399e-03, - 2DIAGNOSTIC, 51, -7.201618397320e-01, 5.847637721264e-06, 3.4755e-01, 2.0599e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.214699796353e-01, 1.797693134862e+308, 5.8769e-01, 2.4014e-01, - 2DIAGNOSTIC, 2, -6.227804227865e-01, 1.797693134862e+308, 6.0140e-01, 1.3707e-02, - 2DIAGNOSTIC, 3, -6.240705889909e-01, 1.797693134862e+308, 6.1558e-01, 1.4180e-02, - 2DIAGNOSTIC, 4, -6.250255256197e-01, 1.797693134862e+308, 6.2929e-01, 1.3711e-02, - 2DIAGNOSTIC, 5, -6.255701609216e-01, 1.797693134862e+308, 6.4497e-01, 1.5686e-02, - 2DIAGNOSTIC, 6, -6.257875813841e-01, 1.797693134862e+308, 6.5865e-01, 1.3674e-02, - 2DIAGNOSTIC, 7, -6.258580330073e-01, 1.797693134862e+308, 6.7203e-01, 1.3387e-02, - 2DIAGNOSTIC, 8, -6.264376295611e-01, 1.797693134862e+308, 6.8948e-01, 1.7446e-02, - 2DIAGNOSTIC, 9, -6.265932488460e-01, 1.797693134862e+308, 7.0673e-01, 1.7249e-02, - 2DIAGNOSTIC, 10, -6.264364140712e-01, 4.753733499134e-04, 7.2063e-01, 1.3898e-02, - 2DIAGNOSTIC, 11, -6.269635098214e-01, 3.238939778551e-04, 7.3808e-01, 1.7456e-02, - 2DIAGNOSTIC, 12, -6.270454727864e-01, 2.203528202266e-04, 7.5270e-01, 1.4613e-02, - 2DIAGNOSTIC, 13, -6.271197122933e-01, 1.598941354126e-04, 7.7250e-01, 1.9804e-02, - 2DIAGNOSTIC, 14, -6.270809928926e-01, 1.232490382072e-04, 7.8659e-01, 1.4091e-02, - 2DIAGNOSTIC, 15, -6.271021897063e-01, 9.781957074845e-05, 8.0278e-01, 1.6190e-02, - 2DIAGNOSTIC, 16, -6.270679580003e-01, 7.197430817400e-05, 8.1874e-01, 1.5956e-02, - 2DIAGNOSTIC, 17, -6.270678924351e-01, 4.407042692812e-05, 8.3330e-01, 1.4566e-02, - 2DIAGNOSTIC, 18, -6.272191068218e-01, 3.382914406221e-05, 8.5335e-01, 2.0043e-02, - 2DIAGNOSTIC, 19, -6.271487072709e-01, 2.391578011538e-05, 8.6745e-01, 1.4107e-02, - 2DIAGNOSTIC, 20, -6.271438166866e-01, 9.050136507469e-06, 8.8348e-01, 1.6026e-02, - 2DIAGNOSTIC, 21, -6.271508271412e-01, 6.456889007501e-06, 8.9936e-01, 1.5884e-02, - 2DIAGNOSTIC, 22, -6.271413630021e-01, 5.049867162488e-06, 9.1325e-01, 1.3887e-02, - 2DIAGNOSTIC, 23, -6.271334693346e-01, 4.713962923598e-06, 9.2726e-01, 1.4013e-02, - 2DIAGNOSTIC, 24, -6.271082412885e-01, 2.881835739293e-06, 9.4280e-01, 1.5540e-02, - 2DIAGNOSTIC, 25, -6.271158425654e-01, 1.650241526659e-06, 9.5848e-01, 1.5681e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.166279238510e-01, 1.797693134862e+308, 1.3411e+00, 3.8266e-01, - 2DIAGNOSTIC, 2, -5.175290393106e-01, 1.797693134862e+308, 1.4397e+00, 9.8593e-02, - 2DIAGNOSTIC, 3, -5.188923824324e-01, 1.797693134862e+308, 1.5399e+00, 1.0018e-01, - 2DIAGNOSTIC, 4, -5.202360938528e-01, 1.797693134862e+308, 1.6394e+00, 9.9441e-02, - 2DIAGNOSTIC, 5, -5.210254171662e-01, 1.797693134862e+308, 1.7518e+00, 1.1247e-01, - 2DIAGNOSTIC, 6, -5.211535114148e-01, 1.797693134862e+308, 1.8494e+00, 9.7597e-02, - 2DIAGNOSTIC, 7, -5.212126242050e-01, 1.797693134862e+308, 2.0653e+00, 2.1583e-01, - 2DIAGNOSTIC, 8, -5.212045914597e-01, 1.797693134862e+308, 2.1750e+00, 1.0971e-01, - 2DIAGNOSTIC, 9, -5.212053101016e-01, 1.797693134862e+308, 2.2978e+00, 1.2280e-01, - 2DIAGNOSTIC, 10, -5.212046968919e-01, 5.436372622959e-04, 2.4089e+00, 1.1115e-01, - 2DIAGNOSTIC, 11, -5.212023348115e-01, 3.241497935086e-04, 2.5071e+00, 9.8183e-02, - 2DIAGNOSTIC, 12, -5.211988904478e-01, 1.528617396413e-04, 2.6096e+00, 1.0251e-01, - 2DIAGNOSTIC, 13, -5.212003639296e-01, 5.062603490137e-05, 2.7260e+00, 1.1644e-01, - 2DIAGNOSTIC, 14, -5.212003393476e-01, 1.027526522504e-05, 2.8402e+00, 1.1414e-01, - 2DIAGNOSTIC, 15, -5.211984629402e-01, 3.138365643002e-06, 2.9422e+00, 1.0201e-01, - 2DIAGNOSTIC, 16, -5.211967571020e-01, 1.059096456882e-06, 3.0538e+00, 1.1158e-01, - 2DIAGNOSTIC, 17, -5.211964679744e-01, 1.210058910128e-06, 3.1671e+00, 1.1337e-01, - 2DIAGNOSTIC, 18, -5.211960106027e-01, 1.144324064672e-06, 3.2797e+00, 1.1260e-01, - 2DIAGNOSTIC, 19, -5.211939730174e-01, 1.103148105391e-06, 3.3909e+00, 1.1115e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.538970039276e-01, 1.797693134862e+308, 4.7268e+00, 1.3359e+00, - 2DIAGNOSTIC, 2, -4.540154039567e-01, 1.797693134862e+308, 5.3911e+00, 6.6437e-01, - 2DIAGNOSTIC, 3, -4.540217236939e-01, 1.797693134862e+308, 6.9926e+00, 1.6015e+00, - 2DIAGNOSTIC, 4, -4.540218581260e-01, 1.797693134862e+308, 7.5902e+00, 5.9754e-01, - 2DIAGNOSTIC, 5, -4.540217740629e-01, 1.797693134862e+308, 8.1328e+00, 5.4258e-01, - 2DIAGNOSTIC, 6, -4.540215849480e-01, 1.797693134862e+308, 8.7883e+00, 6.5558e-01, - 2DIAGNOSTIC, 7, -4.540215738838e-01, 1.797693134862e+308, 9.4621e+00, 6.7373e-01, - 2DIAGNOSTIC, 8, -4.540214841602e-01, 1.797693134862e+308, 1.0100e+01, 6.3749e-01, - 2DIAGNOSTIC, 9, -4.540213646327e-01, 1.797693134862e+308, 1.0687e+01, 5.8769e-01, - 2DIAGNOSTIC, 10, -4.540209498717e-01, 1.124528227986e-05, 1.1315e+01, 6.2771e-01, - 2DIAGNOSTIC, 11, -4.540208672027e-01, 3.136801747516e-06, 1.1934e+01, 6.1938e-01, - 2DIAGNOSTIC, 12, -4.540207759253e-01, 2.519960427341e-06, 1.2493e+01, 5.5849e-01, - 2DIAGNOSTIC, 13, -4.540208519605e-01, 2.317287292067e-06, 1.3115e+01, 6.2253e-01, - 2DIAGNOSTIC, 14, -4.540207636964e-01, 2.157377567105e-06, 1.3676e+01, 5.6044e-01, - 2DIAGNOSTIC, 15, -4.540207217281e-01, 2.024575681145e-06, 1.4324e+01, 6.4832e-01, - 2DIAGNOSTIC, 16, -4.540206661918e-01, 1.907693920652e-06, 1.4957e+01, 6.3260e-01, - 2DIAGNOSTIC, 17, -4.540204978114e-01, 1.805200009211e-06, 1.5596e+01, 6.3948e-01, - 2DIAGNOSTIC, 18, -4.540203290282e-01, 1.711199509383e-06, 1.6139e+01, 5.4244e-01, - 2DIAGNOSTIC, 19, -4.540201869056e-01, 1.624084233556e-06, 1.6768e+01, 6.2963e-01, - 2DIAGNOSTIC, 20, -4.540201403257e-01, 1.535995858323e-06, 1.7423e+01, 6.5486e-01, - 2DIAGNOSTIC, 21, -4.540199000625e-01, 1.451770569282e-06, 1.8081e+01, 6.5766e-01, - 2DIAGNOSTIC, 22, -4.540199702082e-01, 1.380590219341e-06, 1.8716e+01, 6.3535e-01, - 2DIAGNOSTIC, 23, -4.540197051699e-01, 1.316554045942e-06, 1.9272e+01, 5.5598e-01, - 2DIAGNOSTIC, 24, -4.540197818677e-01, 1.263929717228e-06, 1.9912e+01, 6.3986e-01, - 2DIAGNOSTIC, 25, -4.540198584089e-01, 1.222025284214e-06, 2.0543e+01, 6.3102e-01, - 2DIAGNOSTIC, 26, -4.540197595398e-01, 1.184337966510e-06, 2.1100e+01, 5.5678e-01, - 2DIAGNOSTIC, 27, -4.540196997095e-01, 1.148024708041e-06, 2.1726e+01, 6.2624e-01, - 2DIAGNOSTIC, 28, -4.540197949302e-01, 1.115620563021e-06, 2.2339e+01, 6.1317e-01, - 2DIAGNOSTIC, 29, -4.540197351149e-01, 1.082893549088e-06, 2.2971e+01, 6.3192e-01, - 2DIAGNOSTIC, 30, -4.540195606562e-01, 1.049146188425e-06, 2.3591e+01, 6.1997e-01, - 2DIAGNOSTIC, 31, -4.540193379673e-01, 1.009357303114e-06, 2.4175e+01, 5.8352e-01, - Elapsed time (stage 0): 2.4553e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.001043003156e-01, 1.797693134862e+308, 1.8216e-01, 1.8216e-01, - 2DIAGNOSTIC, 2, -7.018816186680e-01, 1.797693134862e+308, 1.8439e-01, 2.2280e-03, - 2DIAGNOSTIC, 3, -7.039450214253e-01, 1.797693134862e+308, 1.8663e-01, 2.2371e-03, - 2DIAGNOSTIC, 4, -7.059705883622e-01, 1.797693134862e+308, 1.8896e-01, 2.3339e-03, - 2DIAGNOSTIC, 5, -7.083664377543e-01, 1.797693134862e+308, 1.9111e-01, 2.1539e-03, - 2DIAGNOSTIC, 6, -7.119195224689e-01, 1.797693134862e+308, 1.9318e-01, 2.0690e-03, - 2DIAGNOSTIC, 7, -7.149497805545e-01, 1.797693134862e+308, 1.9529e-01, 2.1091e-03, - 2DIAGNOSTIC, 8, -7.179107037917e-01, 1.797693134862e+308, 1.9851e-01, 3.2139e-03, - 2DIAGNOSTIC, 9, -7.185169826251e-01, 1.797693134862e+308, 2.0192e-01, 3.4170e-03, - 2DIAGNOSTIC, 10, -7.186314404232e-01, 1.909785622809e-03, 2.0415e-01, 2.2290e-03, - 2DIAGNOSTIC, 11, -7.188456904121e-01, 1.585816646749e-03, 2.0671e-01, 2.5599e-03, - 2DIAGNOSTIC, 12, -7.191063895357e-01, 1.240175382537e-03, 2.0920e-01, 2.4891e-03, - 2DIAGNOSTIC, 13, -7.192040373637e-01, 9.017370709963e-04, 2.1148e-01, 2.2781e-03, - 2DIAGNOSTIC, 14, -7.197849157563e-01, 6.048232914618e-04, 2.1404e-01, 2.5649e-03, - 2DIAGNOSTIC, 15, -7.199969952154e-01, 3.612753050311e-04, 2.1661e-01, 2.5618e-03, - 2DIAGNOSTIC, 16, -7.198626617596e-01, 1.995266927110e-04, 2.1893e-01, 2.3191e-03, - 2DIAGNOSTIC, 17, -7.198876032487e-01, 1.087869488515e-04, 2.2127e-01, 2.3470e-03, - 2DIAGNOSTIC, 18, -7.203279595461e-01, 9.315096947497e-05, 2.2422e-01, 2.9478e-03, - 2DIAGNOSTIC, 19, -7.204450060074e-01, 8.539025022249e-05, 2.2661e-01, 2.3849e-03, - 2DIAGNOSTIC, 20, -7.205535424869e-01, 7.498237029612e-05, 2.2941e-01, 2.8050e-03, - 2DIAGNOSTIC, 21, -7.212455094362e-01, 7.607211543699e-05, 2.3205e-01, 2.6360e-03, - 2DIAGNOSTIC, 22, -7.220730643458e-01, 8.955649488882e-05, 2.3510e-01, 3.0501e-03, - 2DIAGNOSTIC, 23, -7.235681059222e-01, 1.204450722240e-04, 2.3908e-01, 3.9830e-03, - 2DIAGNOSTIC, 24, -7.243178813751e-01, 1.590277050229e-04, 2.4218e-01, 3.0961e-03, - 2DIAGNOSTIC, 25, -7.244469271867e-01, 1.853618014539e-04, 2.4522e-01, 3.0489e-03, - 2DIAGNOSTIC, 26, -7.243462882458e-01, 1.890821165501e-04, 2.4807e-01, 2.8470e-03, - 2DIAGNOSTIC, 27, -7.241784950340e-01, 1.725222087227e-04, 2.5124e-01, 3.1719e-03, - 2DIAGNOSTIC, 28, -7.240708230610e-01, 1.454795896114e-04, 2.5400e-01, 2.7590e-03, - 2DIAGNOSTIC, 29, -7.240962974185e-01, 1.086296291205e-04, 2.5639e-01, 2.3890e-03, - 2DIAGNOSTIC, 30, -7.239886953019e-01, 6.417438020957e-05, 2.5909e-01, 2.6941e-03, - 2DIAGNOSTIC, 31, -7.240091623442e-01, 2.586249386038e-05, 2.6145e-01, 2.3639e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.177193773535e-01, 1.797693134862e+308, 4.7866e-01, 2.1721e-01, - 2DIAGNOSTIC, 2, -6.183443242977e-01, 1.797693134862e+308, 4.9330e-01, 1.4642e-02, - 2DIAGNOSTIC, 3, -6.190738962955e-01, 1.797693134862e+308, 5.0817e-01, 1.4868e-02, - 2DIAGNOSTIC, 4, -6.202040428110e-01, 1.797693134862e+308, 5.2268e-01, 1.4503e-02, - 2DIAGNOSTIC, 5, -6.216770827377e-01, 1.797693134862e+308, 5.3738e-01, 1.4706e-02, - 2DIAGNOSTIC, 6, -6.225852158932e-01, 1.797693134862e+308, 5.5185e-01, 1.4465e-02, - 2DIAGNOSTIC, 7, -6.233137873459e-01, 1.797693134862e+308, 5.6893e-01, 1.7081e-02, - 2DIAGNOSTIC, 8, -6.236982622215e-01, 1.797693134862e+308, 5.8791e-01, 1.8986e-02, - 2DIAGNOSTIC, 9, -6.241527980949e-01, 1.797693134862e+308, 6.0954e-01, 2.1630e-02, - 2DIAGNOSTIC, 10, -6.241462075753e-01, 7.508636342064e-04, 6.2363e-01, 1.4083e-02, - 2DIAGNOSTIC, 11, -6.244581432120e-01, 6.005197102886e-04, 6.3775e-01, 1.4121e-02, - 2DIAGNOSTIC, 12, -6.247115620460e-01, 4.551216488199e-04, 6.5267e-01, 1.4925e-02, - 2DIAGNOSTIC, 13, -6.250419638159e-01, 3.280675128706e-04, 6.6837e-01, 1.5699e-02, - 2DIAGNOSTIC, 14, -6.254895103237e-01, 2.401454259230e-04, 6.8432e-01, 1.5946e-02, - 2DIAGNOSTIC, 15, -6.264586878185e-01, 2.160199197007e-04, 7.0584e-01, 2.1523e-02, - 2DIAGNOSTIC, 16, -6.270849773057e-01, 2.181460060835e-04, 7.2678e-01, 2.0941e-02, - 2DIAGNOSTIC, 17, -6.271524882326e-01, 2.211793627147e-04, 7.4266e-01, 1.5875e-02, - 2DIAGNOSTIC, 18, -6.272925678296e-01, 2.170342455921e-04, 7.5713e-01, 1.4477e-02, - 2DIAGNOSTIC, 19, -6.273611067535e-01, 2.059951859033e-04, 7.7181e-01, 1.4679e-02, - 2DIAGNOSTIC, 20, -6.275216204972e-01, 1.801329373592e-04, 7.8625e-01, 1.4440e-02, - 2DIAGNOSTIC, 21, -6.277636932836e-01, 1.518735768904e-04, 8.0136e-01, 1.5110e-02, - 2DIAGNOSTIC, 22, -6.280583496571e-01, 1.235826109786e-04, 8.2194e-01, 2.0582e-02, - 2DIAGNOSTIC, 23, -6.282105314447e-01, 9.595691554230e-05, 8.3852e-01, 1.6575e-02, - 2DIAGNOSTIC, 24, -6.282088711671e-01, 6.989185164244e-05, 8.5599e-01, 1.7468e-02, - 2DIAGNOSTIC, 25, -6.286770512274e-01, 6.542213480203e-05, 8.7310e-01, 1.7114e-02, - 2DIAGNOSTIC, 26, -6.290971752339e-01, 7.329240056538e-05, 8.9020e-01, 1.7097e-02, - 2DIAGNOSTIC, 27, -6.291323032450e-01, 7.529212237611e-05, 9.1143e-01, 2.1231e-02, - 2DIAGNOSTIC, 28, -6.291263903078e-01, 7.253189535097e-05, 9.2861e-01, 1.7182e-02, - 2DIAGNOSTIC, 29, -6.291171199886e-01, 6.428074363092e-05, 9.4448e-01, 1.5870e-02, - 2DIAGNOSTIC, 30, -6.291091103940e-01, 5.277471131755e-05, 9.6130e-01, 1.6817e-02, - 2DIAGNOSTIC, 31, -6.291120259282e-01, 4.048314927140e-05, 9.7813e-01, 1.6835e-02, - 2DIAGNOSTIC, 32, -6.290998166371e-01, 2.924656019729e-05, 9.9426e-01, 1.6123e-02, - 2DIAGNOSTIC, 33, -6.290738547788e-01, 1.792905157075e-05, 1.0081e+00, 1.3799e-02, - 2DIAGNOSTIC, 34, -6.290782031977e-01, 5.614002549705e-06, 1.0246e+00, 1.6577e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.193278108377e-01, 1.797693134862e+308, 1.4000e+00, 3.7539e-01, - 2DIAGNOSTIC, 2, -5.203294698707e-01, 1.797693134862e+308, 1.4983e+00, 9.8262e-02, - 2DIAGNOSTIC, 3, -5.216408554865e-01, 1.797693134862e+308, 1.5958e+00, 9.7553e-02, - 2DIAGNOSTIC, 4, -5.226654443161e-01, 1.797693134862e+308, 1.7001e+00, 1.0428e-01, - 2DIAGNOSTIC, 5, -5.228664896194e-01, 1.797693134862e+308, 1.8699e+00, 1.6975e-01, - 2DIAGNOSTIC, 6, -5.228611022163e-01, 1.797693134862e+308, 2.0052e+00, 1.3531e-01, - 2DIAGNOSTIC, 7, -5.228527793040e-01, 1.797693134862e+308, 2.1428e+00, 1.3762e-01, - 2DIAGNOSTIC, 8, -5.228545824418e-01, 1.797693134862e+308, 2.2999e+00, 1.5711e-01, - 2DIAGNOSTIC, 9, -5.228548582532e-01, 1.797693134862e+308, 2.4128e+00, 1.1287e-01, - 2DIAGNOSTIC, 10, -5.228522116210e-01, 3.662271600360e-04, 2.5283e+00, 1.1554e-01, - 2DIAGNOSTIC, 11, -5.228510097890e-01, 1.862562061965e-04, 2.6340e+00, 1.0566e-01, - 2DIAGNOSTIC, 12, -5.228499757512e-01, 6.426744075555e-05, 2.7511e+00, 1.1713e-01, - 2DIAGNOSTIC, 13, -5.228502413423e-01, 9.275376515974e-06, 2.8559e+00, 1.0475e-01, - 2DIAGNOSTIC, 14, -5.228492449807e-01, 1.077149331091e-06, 2.9723e+00, 1.1643e-01, - 2DIAGNOSTIC, 15, -5.228496404518e-01, 1.394488711795e-06, 3.0736e+00, 1.0128e-01, - 2DIAGNOSTIC, 16, -5.228488639452e-01, 1.538825455491e-06, 3.1761e+00, 1.0252e-01, - 2DIAGNOSTIC, 17, -5.228499937735e-01, 1.475579443910e-06, 3.2907e+00, 1.1458e-01, - 2DIAGNOSTIC, 18, -5.228480980045e-01, 1.450492160160e-06, 3.3916e+00, 1.0092e-01, - 2DIAGNOSTIC, 19, -5.228463921503e-01, 1.419848670678e-06, 3.5061e+00, 1.1446e-01, - 2DIAGNOSTIC, 20, -5.228442661311e-01, 1.288140237539e-06, 3.6073e+00, 1.0127e-01, - 2DIAGNOSTIC, 21, -5.228426679302e-01, 1.125591206567e-06, 3.7230e+00, 1.1562e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.527242969115e-01, 1.797693134862e+308, 5.0598e+00, 1.3368e+00, - 2DIAGNOSTIC, 2, -4.530174777417e-01, 1.797693134862e+308, 5.6699e+00, 6.1012e-01, - 2DIAGNOSTIC, 3, -4.532750616245e-01, 1.797693134862e+308, 6.2763e+00, 6.0642e-01, - 2DIAGNOSTIC, 4, -4.533992303745e-01, 1.797693134862e+308, 6.8862e+00, 6.0984e-01, - 2DIAGNOSTIC, 5, -4.534395362669e-01, 1.797693134862e+308, 7.4811e+00, 5.9489e-01, - 2DIAGNOSTIC, 6, -4.535366170171e-01, 1.797693134862e+308, 8.4506e+00, 9.6956e-01, - 2DIAGNOSTIC, 7, -4.535756958069e-01, 1.797693134862e+308, 9.0409e+00, 5.9028e-01, - 2DIAGNOSTIC, 8, -4.535838627132e-01, 1.797693134862e+308, 9.6057e+00, 5.6475e-01, - 2DIAGNOSTIC, 9, -4.536182703071e-01, 1.797693134862e+308, 1.0198e+01, 5.9219e-01, - 2DIAGNOSTIC, 10, -4.537108717900e-01, 1.176866355672e-04, 1.0779e+01, 5.8136e-01, - 2DIAGNOSTIC, 11, -4.541196755887e-01, 1.003554529907e-04, 1.1430e+01, 6.5041e-01, - 2DIAGNOSTIC, 12, -4.546166651939e-01, 1.175818175264e-04, 1.2677e+01, 1.2469e+00, - 2DIAGNOSTIC, 13, -4.546191135676e-01, 1.338423223452e-04, 1.3364e+01, 6.8753e-01, - 2DIAGNOSTIC, 14, -4.546185297034e-01, 1.419217973794e-04, 1.4311e+01, 9.4662e-01, - 2DIAGNOSTIC, 15, -4.546180307878e-01, 1.379512607380e-04, 1.5083e+01, 7.7185e-01, - 2DIAGNOSTIC, 16, -4.546176686498e-01, 1.254365751044e-04, 1.6025e+01, 9.4238e-01, - 2DIAGNOSTIC, 17, -4.546176111678e-01, 1.041670829598e-04, 1.6721e+01, 6.9583e-01, - 2DIAGNOSTIC, 18, -4.546175049945e-01, 7.626563093988e-05, 1.7523e+01, 8.0220e-01, - 2DIAGNOSTIC, 19, -4.546174927888e-01, 4.587821575405e-05, 1.8221e+01, 6.9784e-01, - 2DIAGNOSTIC, 20, -4.546173255049e-01, 1.714226612700e-05, 1.8999e+01, 7.7783e-01, - 2DIAGNOSTIC, 21, -4.546172354482e-01, 1.457924483916e-06, 1.9649e+01, 6.5075e-01, - 2DIAGNOSTIC, 22, -4.546168805678e-01, 1.335126838871e-06, 2.0373e+01, 7.2348e-01, - 2DIAGNOSTIC, 23, -4.546166677603e-01, 1.294756872161e-06, 2.0998e+01, 6.2504e-01, - 2DIAGNOSTIC, 24, -4.546168318331e-01, 1.255516891348e-06, 2.1719e+01, 7.2138e-01, - 2DIAGNOSTIC, 25, -4.546168407757e-01, 1.213815506655e-06, 2.2498e+01, 7.7860e-01, - 2DIAGNOSTIC, 26, -4.546167751047e-01, 1.170717826855e-06, 2.3274e+01, 7.7587e-01, - 2DIAGNOSTIC, 27, -4.546166688277e-01, 1.132389686333e-06, 2.3896e+01, 6.2223e-01, - 2DIAGNOSTIC, 28, -4.546164411938e-01, 1.093852733093e-06, 2.4610e+01, 7.1418e-01, - 2DIAGNOSTIC, 29, -4.546165390562e-01, 1.063920659093e-06, 2.5336e+01, 7.2588e-01, - 2DIAGNOSTIC, 30, -4.546163155722e-01, 1.030783260851e-06, 2.5952e+01, 6.1622e-01, - 2DIAGNOSTIC, 31, -4.546163065273e-01, 1.000991586619e-06, 2.6659e+01, 7.0629e-01, - Elapsed time (stage 1): 2.7083e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.108498941699e-01, 1.797693134862e+308, 2.6378e-01, 2.6378e-01, - 1DIAGNOSTIC, 2, -9.190743470638e-01, 1.797693134862e+308, 3.5895e-01, 9.5164e-02, - 1DIAGNOSTIC, 3, -9.251748714612e-01, 1.797693134862e+308, 4.5551e-01, 9.6569e-02, - 1DIAGNOSTIC, 4, -9.296372487805e-01, 1.797693134862e+308, 5.4819e-01, 9.2676e-02, - 1DIAGNOSTIC, 5, -9.333648803785e-01, 1.797693134862e+308, 6.4444e-01, 9.6251e-02, - 1DIAGNOSTIC, 6, -9.364390959383e-01, 1.797693134862e+308, 7.4382e-01, 9.9382e-02, - 1DIAGNOSTIC, 7, -9.391175650953e-01, 1.797693134862e+308, 8.4491e-01, 1.0109e-01, - 1DIAGNOSTIC, 8, -9.412215464961e-01, 1.797693134862e+308, 9.4332e-01, 9.8405e-02, - 1DIAGNOSTIC, 9, -9.431144889730e-01, 1.797693134862e+308, 1.0425e+00, 9.9145e-02, - 1DIAGNOSTIC, 10, -9.447156643510e-01, 2.169736197689e-03, 1.1451e+00, 1.0265e-01, - 1DIAGNOSTIC, 11, -9.460481696467e-01, 1.597595386138e-03, 1.2494e+00, 1.0432e-01, - 1DIAGNOSTIC, 12, -9.471494217756e-01, 1.212510629598e-03, 1.3501e+00, 1.0065e-01, - 1DIAGNOSTIC, 13, -9.480723223378e-01, 9.405665665699e-04, 1.4520e+00, 1.0193e-01, - 1DIAGNOSTIC, 14, -9.488417861183e-01, 7.348078731156e-04, 1.5506e+00, 9.8621e-02, - 1DIAGNOSTIC, 15, -9.494798939753e-01, 5.771298284316e-04, 1.6563e+00, 1.0571e-01, - 1DIAGNOSTIC, 16, -9.500221087498e-01, 4.542712713407e-04, 1.7561e+00, 9.9724e-02, - 1DIAGNOSTIC, 17, -9.504834650843e-01, 3.597252046880e-04, 1.8533e+00, 9.7234e-02, - 1DIAGNOSTIC, 18, -9.508860832784e-01, 2.843452776770e-04, 1.9556e+00, 1.0229e-01, - 1DIAGNOSTIC, 19, -9.513157848370e-01, 2.273248562848e-04, 2.0565e+00, 1.0092e-01, - 1DIAGNOSTIC, 20, -9.516263418480e-01, 1.836029848368e-04, 2.1562e+00, 9.9657e-02, - 1DIAGNOSTIC, 21, -9.518977681241e-01, 1.499398021746e-04, 2.2547e+00, 9.8512e-02, - 1DIAGNOSTIC, 22, -9.521275004038e-01, 1.235670979810e-04, 2.3569e+00, 1.0220e-01, - 1DIAGNOSTIC, 23, -9.523270714463e-01, 1.026287565096e-04, 2.4566e+00, 9.9722e-02, - 1DIAGNOSTIC, 24, -9.525010444237e-01, 8.565886562500e-05, 2.5529e+00, 9.6332e-02, - 1DIAGNOSTIC, 25, -9.526519179760e-01, 7.153334244030e-05, 2.6560e+00, 1.0305e-01, - 1DIAGNOSTIC, 26, -9.527837922189e-01, 5.962948789857e-05, 2.7578e+00, 1.0183e-01, - 1DIAGNOSTIC, 27, -9.529486817136e-01, 5.003370599178e-05, 2.8574e+00, 9.9607e-02, - 1DIAGNOSTIC, 28, -9.530465729203e-01, 4.180041911290e-05, 2.9568e+00, 9.9373e-02, - 1DIAGNOSTIC, 29, -9.531334749284e-01, 3.561240638417e-05, 3.0610e+00, 1.0417e-01, - 1DIAGNOSTIC, 30, -9.532088440263e-01, 3.040781068643e-05, 3.1656e+00, 1.0465e-01, - 1DIAGNOSTIC, 31, -9.532746781167e-01, 2.599586172639e-05, 3.2662e+00, 1.0056e-01, - 1DIAGNOSTIC, 32, -9.533332268489e-01, 2.216478328663e-05, 3.3701e+00, 1.0391e-01, - 1DIAGNOSTIC, 33, -9.533858829098e-01, 1.882858057399e-05, 3.4731e+00, 1.0298e-01, - 1DIAGNOSTIC, 34, -9.534319053476e-01, 1.592294825499e-05, 3.5722e+00, 9.9104e-02, - 1DIAGNOSTIC, 35, -9.534718711603e-01, 1.338448661330e-05, 3.6760e+00, 1.0380e-01, - 1DIAGNOSTIC, 36, -9.535056655444e-01, 1.115589550353e-05, 3.7819e+00, 1.0593e-01, - 1DIAGNOSTIC, 37, -9.535337662495e-01, 9.624455731855e-06, 3.8810e+00, 9.9102e-02, - 1DIAGNOSTIC, 38, -9.535576241160e-01, 8.290029190065e-06, 3.9803e+00, 9.9278e-02, - 1DIAGNOSTIC, 39, -9.535781958901e-01, 7.131910905168e-06, 4.0837e+00, 1.0343e-01, - 1DIAGNOSTIC, 40, -9.535958488717e-01, 6.119795160176e-06, 4.1808e+00, 9.7048e-02, - 1DIAGNOSTIC, 41, -9.536106698980e-01, 5.232971101252e-06, 4.2800e+00, 9.9246e-02, - 1DIAGNOSTIC, 42, -9.536231069103e-01, 4.464516871104e-06, 4.3813e+00, 1.0133e-01, - 1DIAGNOSTIC, 43, -9.536332415055e-01, 3.811131891462e-06, 4.4859e+00, 1.0458e-01, - 1DIAGNOSTIC, 44, -9.536407450076e-01, 3.254770843116e-06, 4.5852e+00, 9.9332e-02, - 1DIAGNOSTIC, 45, -9.536463133919e-01, 2.781333920284e-06, 4.6890e+00, 1.0373e-01, - 1DIAGNOSTIC, 46, -9.536506468469e-01, 2.376167081024e-06, 4.7889e+00, 9.9881e-02, - 1DIAGNOSTIC, 47, -9.536530065630e-01, 2.019338863367e-06, 4.8885e+00, 9.9641e-02, - 1DIAGNOSTIC, 48, -9.536550962807e-01, 1.709430578169e-06, 4.9927e+00, 1.0416e-01, - 1DIAGNOSTIC, 49, -9.536561317325e-01, 1.442852789954e-06, 5.0977e+00, 1.0501e-01, - 1DIAGNOSTIC, 50, -9.536562608368e-01, 1.216591206943e-06, 5.1966e+00, 9.8885e-02, - 1DIAGNOSTIC, 51, -9.536556454761e-01, 1.026406269825e-06, 5.3003e+00, 1.0376e-01, - 1DIAGNOSTIC, 52, -9.536547372699e-01, 8.709236407264e-07, 5.4019e+00, 1.0160e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.120006477625e-01, 1.797693134862e+308, 6.2505e+00, 8.4856e-01, - 1DIAGNOSTIC, 2, -9.162795311601e-01, 1.797693134862e+308, 6.9419e+00, 6.9140e-01, - 1DIAGNOSTIC, 3, -9.200041725930e-01, 1.797693134862e+308, 7.6127e+00, 6.7085e-01, - 1DIAGNOSTIC, 4, -9.226296558859e-01, 1.797693134862e+308, 8.2904e+00, 6.7768e-01, - 1DIAGNOSTIC, 5, -9.249812445167e-01, 1.797693134862e+308, 8.9711e+00, 6.8069e-01, - 1DIAGNOSTIC, 6, -9.270585290475e-01, 1.797693134862e+308, 9.6558e+00, 6.8471e-01, - 1DIAGNOSTIC, 7, -9.289036300573e-01, 1.797693134862e+308, 1.0334e+01, 6.7774e-01, - 1DIAGNOSTIC, 8, -9.305700604568e-01, 1.797693134862e+308, 1.1022e+01, 6.8828e-01, - 1DIAGNOSTIC, 9, -9.320482679770e-01, 1.797693134862e+308, 1.1724e+01, 7.0265e-01, - 1DIAGNOSTIC, 10, -9.332071723518e-01, 1.406848045037e-03, 1.2412e+01, 6.8758e-01, - 1DIAGNOSTIC, 11, -9.343281136725e-01, 1.094564549948e-03, 1.3100e+01, 6.8781e-01, - 1DIAGNOSTIC, 12, -9.352414750134e-01, 8.677045544075e-04, 1.3790e+01, 6.9013e-01, - 1DIAGNOSTIC, 13, -9.360585908179e-01, 7.039375592341e-04, 1.4472e+01, 6.8235e-01, - 1DIAGNOSTIC, 14, -9.367898100221e-01, 5.725983903787e-04, 1.5163e+01, 6.9042e-01, - 1DIAGNOSTIC, 15, -9.374454654963e-01, 4.675154535019e-04, 1.5879e+01, 7.1655e-01, - 1DIAGNOSTIC, 16, -9.380417210873e-01, 3.835243967033e-04, 1.6552e+01, 6.7229e-01, - 1DIAGNOSTIC, 17, -9.385707320687e-01, 3.165280600649e-04, 1.7229e+01, 6.7779e-01, - 1DIAGNOSTIC, 18, -9.390446462776e-01, 2.638521197370e-04, 1.7930e+01, 7.0088e-01, - 1DIAGNOSTIC, 19, -9.394706866047e-01, 2.227757260141e-04, 1.8628e+01, 6.9762e-01, - 1DIAGNOSTIC, 20, -9.398564293648e-01, 1.885480075218e-04, 1.9314e+01, 6.8580e-01, - 1DIAGNOSTIC, 21, -9.402062094138e-01, 1.613174165042e-04, 1.9990e+01, 6.7633e-01, - 1DIAGNOSTIC, 22, -9.405317507632e-01, 1.386304789252e-04, 2.0667e+01, 6.7678e-01, - 1DIAGNOSTIC, 23, -9.408217761441e-01, 1.195945651505e-04, 2.1325e+01, 6.5819e-01, - 1DIAGNOSTIC, 24, -9.410863582212e-01, 1.035714922238e-04, 2.2018e+01, 6.9264e-01, - 1DIAGNOSTIC, 25, -9.413276879889e-01, 9.003631388350e-05, 2.2704e+01, 6.8616e-01, - 1DIAGNOSTIC, 26, -9.415526613580e-01, 7.870546186045e-05, 2.3371e+01, 6.6743e-01, - 1DIAGNOSTIC, 27, -9.417559222156e-01, 6.907644825559e-05, 2.4049e+01, 6.7797e-01, - 1DIAGNOSTIC, 28, -9.419432838497e-01, 6.083714769176e-05, 2.4737e+01, 6.8740e-01, - 1DIAGNOSTIC, 29, -9.421149674112e-01, 5.372867880124e-05, 2.5426e+01, 6.8960e-01, - 1DIAGNOSTIC, 30, -9.422730768827e-01, 4.756929565815e-05, 2.6111e+01, 6.8477e-01, - 1DIAGNOSTIC, 31, -9.424140375783e-01, 4.215999740019e-05, 2.6799e+01, 6.8852e-01, - 1DIAGNOSTIC, 32, -9.425503980884e-01, 3.753043668620e-05, 2.7484e+01, 6.8423e-01, - 1DIAGNOSTIC, 33, -9.426769350084e-01, 3.350754468944e-05, 2.8151e+01, 6.6696e-01, - 1DIAGNOSTIC, 34, -9.427990425761e-01, 3.004745592403e-05, 2.8821e+01, 6.6998e-01, - 1DIAGNOSTIC, 35, -9.429087543467e-01, 2.702864385111e-05, 2.9513e+01, 6.9281e-01, - 1DIAGNOSTIC, 36, -9.430098354457e-01, 2.441378641065e-05, 3.0191e+01, 6.7718e-01, - 1DIAGNOSTIC, 37, -9.431055302943e-01, 2.212643909518e-05, 3.0872e+01, 6.8112e-01, - 1DIAGNOSTIC, 38, -9.431945378147e-01, 2.011510143551e-05, 3.1543e+01, 6.7141e-01, - 1DIAGNOSTIC, 39, -9.432768846084e-01, 1.832230170951e-05, 3.2225e+01, 6.8157e-01, - 1DIAGNOSTIC, 40, -9.433543388946e-01, 1.671710122433e-05, 3.2893e+01, 6.6823e-01, - 1DIAGNOSTIC, 41, -9.434261499173e-01, 1.522695641366e-05, 3.3570e+01, 6.7740e-01, - 1DIAGNOSTIC, 42, -9.434950063848e-01, 1.389332644464e-05, 3.4252e+01, 6.8159e-01, - 1DIAGNOSTIC, 43, -9.435596524231e-01, 1.269828863977e-05, 3.4916e+01, 6.6401e-01, - 1DIAGNOSTIC, 44, -9.436189592283e-01, 1.165029920493e-05, 3.5588e+01, 6.7176e-01, - 1DIAGNOSTIC, 45, -9.436769564569e-01, 1.072131649430e-05, 3.6264e+01, 6.7631e-01, - 1DIAGNOSTIC, 46, -9.437302684092e-01, 9.879693602451e-06, 3.6957e+01, 6.9253e-01, - 1DIAGNOSTIC, 47, -9.437808125153e-01, 9.126310790721e-06, 3.7643e+01, 6.8666e-01, - 1DIAGNOSTIC, 48, -9.438291545834e-01, 8.452292510595e-06, 3.8319e+01, 6.7573e-01, - 1DIAGNOSTIC, 49, -9.438743609323e-01, 7.838961676297e-06, 3.9002e+01, 6.8290e-01, - 1DIAGNOSTIC, 50, -9.439156717526e-01, 7.272377091215e-06, 3.9686e+01, 6.8417e-01, - 1DIAGNOSTIC, 51, -9.439560198885e-01, 6.750206588781e-06, 4.0381e+01, 6.9516e-01, - 1DIAGNOSTIC, 52, -9.439944926702e-01, 6.278283692974e-06, 4.1050e+01, 6.6857e-01, - 1DIAGNOSTIC, 53, -9.440307040849e-01, 5.850085374091e-06, 4.1730e+01, 6.8035e-01, - 1DIAGNOSTIC, 54, -9.440668022757e-01, 5.462471838510e-06, 4.2411e+01, 6.8141e-01, - 1DIAGNOSTIC, 55, -9.440977074192e-01, 5.104681462850e-06, 4.3096e+01, 6.8503e-01, - 1DIAGNOSTIC, 56, -9.441288306726e-01, 4.776540509833e-06, 4.3791e+01, 6.9438e-01, - 1DIAGNOSTIC, 57, -9.441576915623e-01, 4.472141507783e-06, 4.4478e+01, 6.8683e-01, - 1DIAGNOSTIC, 58, -9.441856847695e-01, 4.195678354413e-06, 4.5159e+01, 6.8163e-01, - 1DIAGNOSTIC, 59, -9.442098867407e-01, 3.929831175156e-06, 4.5851e+01, 6.9126e-01, - 1DIAGNOSTIC, 60, -9.442354731173e-01, 3.680678571150e-06, 4.6552e+01, 7.0181e-01, - 1DIAGNOSTIC, 61, -9.442598765921e-01, 3.454136325260e-06, 4.7232e+01, 6.7923e-01, - 1DIAGNOSTIC, 62, -9.442815606960e-01, 3.242683036798e-06, 4.7904e+01, 6.7232e-01, - 1DIAGNOSTIC, 63, -9.443034690667e-01, 3.051101088888e-06, 4.8574e+01, 6.7044e-01, - 1DIAGNOSTIC, 64, -9.443237651128e-01, 2.884320801092e-06, 4.9247e+01, 6.7272e-01, - 1DIAGNOSTIC, 65, -9.443435077521e-01, 2.725671125893e-06, 4.9925e+01, 6.7763e-01, - 1DIAGNOSTIC, 66, -9.443629350456e-01, 2.585402464041e-06, 5.0606e+01, 6.8078e-01, - 1DIAGNOSTIC, 67, -9.443831203266e-01, 2.465535255881e-06, 5.1275e+01, 6.6902e-01, - 1DIAGNOSTIC, 68, -9.444003026074e-01, 2.356138664002e-06, 5.1936e+01, 6.6194e-01, - 1DIAGNOSTIC, 69, -9.444173171542e-01, 2.246523537145e-06, 5.2619e+01, 6.8267e-01, - 1DIAGNOSTIC, 70, -9.444327037181e-01, 2.142918087289e-06, 5.3301e+01, 6.8179e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.887763330868e-01, 1.797693134862e+308, 5.8995e+01, 5.6939e+00, - 1DIAGNOSTIC, 2, -8.918517192679e-01, 1.797693134862e+308, 6.4384e+01, 5.3887e+00, - 1DIAGNOSTIC, 3, -8.948767394377e-01, 1.797693134862e+308, 6.9837e+01, 5.4530e+00, - 1DIAGNOSTIC, 4, -8.977253070506e-01, 1.797693134862e+308, 7.5247e+01, 5.4107e+00, - 1DIAGNOSTIC, 5, -9.004372305943e-01, 1.797693134862e+308, 8.0681e+01, 5.4338e+00, - 1DIAGNOSTIC, 6, -9.031084134440e-01, 1.797693134862e+308, 8.6112e+01, 5.4311e+00, - 1DIAGNOSTIC, 7, -9.057117745697e-01, 1.797693134862e+308, 9.1543e+01, 5.4310e+00, - 1DIAGNOSTIC, 8, -9.079498271368e-01, 1.797693134862e+308, 9.6992e+01, 5.4484e+00, - 1DIAGNOSTIC, 9, -9.098743369416e-01, 1.797693134862e+308, 1.0243e+02, 5.4409e+00, - 1DIAGNOSTIC, 10, -9.115559749217e-01, 1.639111924670e-03, 1.0782e+02, 5.3844e+00, - 1DIAGNOSTIC, 11, -9.129086835747e-01, 1.380176488222e-03, 1.1336e+02, 5.5385e+00, - 1DIAGNOSTIC, 12, -9.141052143815e-01, 1.151883294485e-03, 1.1887e+02, 5.5120e+00, - 1DIAGNOSTIC, 13, -9.150513804701e-01, 9.501617928707e-04, 1.2442e+02, 5.5568e+00, - 1DIAGNOSTIC, 14, -9.158993783353e-01, 7.735337728917e-04, 1.2984e+02, 5.4133e+00, - 1DIAGNOSTIC, 15, -9.166678996528e-01, 6.222477553847e-04, 1.3522e+02, 5.3834e+00, - 1DIAGNOSTIC, 16, -9.173604940588e-01, 4.982506846133e-04, 1.4058e+02, 5.3588e+00, - 1DIAGNOSTIC, 17, -9.179916028671e-01, 4.022265593868e-04, 1.4594e+02, 5.3612e+00, - 1DIAGNOSTIC, 18, -9.185610737455e-01, 3.282685597882e-04, 1.5131e+02, 5.3711e+00, - 1DIAGNOSTIC, 19, -9.190764972018e-01, 2.716155091535e-04, 1.5668e+02, 5.3659e+00, - 1DIAGNOSTIC, 20, -9.195456391709e-01, 2.288478272188e-04, 1.6205e+02, 5.3726e+00, - 1DIAGNOSTIC, 21, -9.199719246327e-01, 1.951537125774e-04, 1.6742e+02, 5.3700e+00, - 1DIAGNOSTIC, 22, -9.203601424763e-01, 1.687285651619e-04, 1.7281e+02, 5.3923e+00, - 1DIAGNOSTIC, 23, -9.207184465094e-01, 1.464696649035e-04, 1.7819e+02, 5.3761e+00, - 1DIAGNOSTIC, 24, -9.210453131308e-01, 1.275753202556e-04, 1.8355e+02, 5.3578e+00, - 1DIAGNOSTIC, 25, -9.213439659627e-01, 1.115078982283e-04, 1.8894e+02, 5.3960e+00, - 1DIAGNOSTIC, 26, -9.216188670453e-01, 9.778230691204e-05, 1.9430e+02, 5.3618e+00, - 1DIAGNOSTIC, 27, -9.218790707396e-01, 8.615379946938e-05, 1.9970e+02, 5.3986e+00, - 1DIAGNOSTIC, 28, -9.221211440556e-01, 7.626785054982e-05, 2.0506e+02, 5.3528e+00, - 1DIAGNOSTIC, 29, -9.223461776771e-01, 6.782877036426e-05, 2.1047e+02, 5.4169e+00, - 1DIAGNOSTIC, 30, -9.225590142882e-01, 6.064074753075e-05, 2.1581e+02, 5.3406e+00, - 1DIAGNOSTIC, 31, -9.227531794351e-01, 5.443449065902e-05, 2.2119e+02, 5.3718e+00, - 1DIAGNOSTIC, 32, -9.229385408673e-01, 4.906749954184e-05, 2.2654e+02, 5.3559e+00, - 1DIAGNOSTIC, 33, -9.231138006979e-01, 4.443581450540e-05, 2.3189e+02, 5.3479e+00, - 1DIAGNOSTIC, 34, -9.232800720911e-01, 4.040663920488e-05, 2.3727e+02, 5.3788e+00, - 1DIAGNOSTIC, 35, -9.234368912056e-01, 3.685565311562e-05, 2.4263e+02, 5.3658e+00, - 1DIAGNOSTIC, 36, -9.235911490257e-01, 3.374511511291e-05, 2.4797e+02, 5.3322e+00, - 1DIAGNOSTIC, 37, -9.237360506579e-01, 3.103629034739e-05, 2.5333e+02, 5.3618e+00, - 1DIAGNOSTIC, 38, -9.238769228965e-01, 2.868931548452e-05, 2.5867e+02, 5.3454e+00, - 1DIAGNOSTIC, 39, -9.240125988839e-01, 2.664554625091e-05, 2.6409e+02, 5.4166e+00, - 1DIAGNOSTIC, 40, -9.241425430811e-01, 2.487025416608e-05, 2.6946e+02, 5.3659e+00, - 1DIAGNOSTIC, 41, -9.242658846637e-01, 2.325861668835e-05, 2.7483e+02, 5.3717e+00, - 1DIAGNOSTIC, 42, -9.243835903308e-01, 2.178943838528e-05, 2.8021e+02, 5.3875e+00, - 1DIAGNOSTIC, 43, -9.244982172041e-01, 2.044614202249e-05, 2.8561e+02, 5.3909e+00, - 1DIAGNOSTIC, 44, -9.246067130570e-01, 1.919393217087e-05, 2.9094e+02, 5.3363e+00, - 1DIAGNOSTIC, 45, -9.247101345880e-01, 1.800209860407e-05, 2.9633e+02, 5.3836e+00, - 1DIAGNOSTIC, 46, -9.248091795810e-01, 1.689488657167e-05, 3.0169e+02, 5.3653e+00, - 1DIAGNOSTIC, 47, -9.249043535194e-01, 1.584820055692e-05, 3.0703e+02, 5.3352e+00, - 1DIAGNOSTIC, 48, -9.249972558253e-01, 1.488335853222e-05, 3.1237e+02, 5.3473e+00, - 1DIAGNOSTIC, 49, -9.250893589257e-01, 1.401841407457e-05, 3.1774e+02, 5.3636e+00, - 1DIAGNOSTIC, 50, -9.251791385356e-01, 1.325177083945e-05, 3.2310e+02, 5.3677e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.839475696868e-01, 1.797693134862e+308, 3.6690e+02, 4.3800e+01, - 1DIAGNOSTIC, 2, -8.853850287324e-01, 1.797693134862e+308, 4.1005e+02, 4.3147e+01, - 1DIAGNOSTIC, 3, -8.869849041493e-01, 1.797693134862e+308, 4.5341e+02, 4.3362e+01, - 1DIAGNOSTIC, 4, -8.886121616594e-01, 1.797693134862e+308, 4.9668e+02, 4.3269e+01, - 1DIAGNOSTIC, 5, -8.902451558216e-01, 1.797693134862e+308, 5.4023e+02, 4.3544e+01, - 1DIAGNOSTIC, 6, -8.920893842372e-01, 1.797693134862e+308, 5.8373e+02, 4.3501e+01, - 1DIAGNOSTIC, 7, -8.939808419969e-01, 1.797693134862e+308, 6.2712e+02, 4.3389e+01, - 1DIAGNOSTIC, 8, -8.955582321037e-01, 1.797693134862e+308, 6.7039e+02, 4.3279e+01, - 1DIAGNOSTIC, 9, -8.971635058758e-01, 1.797693134862e+308, 7.1357e+02, 4.3170e+01, - 1DIAGNOSTIC, 10, -8.986486522561e-01, 1.081691048179e-03, 7.5686e+02, 4.3293e+01, - 1DIAGNOSTIC, 11, -8.998293096844e-01, 9.711892454144e-04, 8.0033e+02, 4.3469e+01, - 1DIAGNOSTIC, 12, -9.009455581548e-01, 8.592524877089e-04, 8.4364e+02, 4.3310e+01, - 1DIAGNOSTIC, 13, -9.019326356822e-01, 7.498965267375e-04, 8.8705e+02, 4.3414e+01, - 1DIAGNOSTIC, 14, -9.026827064064e-01, 6.417639149079e-04, 9.3058e+02, 4.3527e+01, - 1DIAGNOSTIC, 15, -9.033421578105e-01, 5.376927063672e-04, 9.7376e+02, 4.3182e+01, - 1DIAGNOSTIC, 16, -9.038243305551e-01, 4.431629808683e-04, 1.0174e+03, 4.3658e+01, - 1DIAGNOSTIC, 17, -9.043611554922e-01, 3.641517816807e-04, 1.0610e+03, 4.3619e+01, - 1DIAGNOSTIC, 18, -9.047401408961e-01, 2.944533144055e-04, 1.1047e+03, 4.3642e+01, - 1DIAGNOSTIC, 19, -9.050771487750e-01, 2.370157895141e-04, 1.1483e+03, 4.3642e+01, - 1DIAGNOSTIC, 20, -9.053973298201e-01, 1.918450705880e-04, 1.1917e+03, 4.3412e+01, - Elapsed time (stage 2): 1192 - - -Total elapsed time: 1244 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:00 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:03 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:08 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:12 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23599 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:12 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:17 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:17 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23652 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:17 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/anat/sub-PNC006_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:20 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23694 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:20 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23699 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:20 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:51 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:53 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:53 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:54 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:55 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:57 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:57 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:58 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:27:59 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/surf/sub-PNC006_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC006_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC006 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:02 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:22 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03/sub-PNC006_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC006 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:23 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC006 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:23 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC006_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC006 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:23 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24499 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:25 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:25 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc/sub-PNC006_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/xfm/sub-PNC006_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24542 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:27 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:27 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC006_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC006_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 72.267 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/logs/proc_func_18-03-2024-13673.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:33 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC006 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC006/ses-03/QC/sub-PNC006_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22040_micapipe_proc-func_sub-PNC006_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC006* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 72.317 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC006_ses-03 -========================reprocessing without filter=================== -sub-PNC007_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC007 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC007 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC007 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC007 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:47 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:28:47 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:30:53 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:32:59 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:33:13 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.26 (mm) at sub-brick 6 -++ Max delta displ in automask = 0.12 (mm) at sub-brick 172 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:46:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:46:22 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:48:32 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:50:41 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-01/func/sub-PNC007_ses-01_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:52:53 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = 0.048 -1.551 2.255 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.8 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = 0.184 -1.739 2.768 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.0 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:57:37 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:58:05 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x562157fab6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [107.102, 64.7781, -108.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562157e22730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562157fc2320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x562157faefa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.8093, 126.21, -114.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562157fb4e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5621587bf230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5621587bd5c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [107.102, 64.7781, -108.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562157fb13f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5621592e9450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5621587bbda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.8093, 126.21, -114.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562157fb8360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562159ae3780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.371618063084e-01, 1.797693134862e+308, 4.2144e-02, 4.2143e-02, - 2DIAGNOSTIC, 2, -7.382253399470e-01, 1.797693134862e+308, 4.3365e-02, 1.2209e-03, - 2DIAGNOSTIC, 3, -7.402179249605e-01, 1.797693134862e+308, 4.4633e-02, 1.2681e-03, - 2DIAGNOSTIC, 4, -7.492583580362e-01, 1.797693134862e+308, 4.5950e-02, 1.3170e-03, - 2DIAGNOSTIC, 5, -7.827818282897e-01, 1.797693134862e+308, 4.7303e-02, 1.3530e-03, - 2DIAGNOSTIC, 6, -7.918542241766e-01, 1.797693134862e+308, 4.8636e-02, 1.3330e-03, - 2DIAGNOSTIC, 7, -8.307349678974e-01, 1.797693134862e+308, 5.0525e-02, 1.8890e-03, - 2DIAGNOSTIC, 8, -8.392650453128e-01, 1.797693134862e+308, 5.1903e-02, 1.3781e-03, - 2DIAGNOSTIC, 9, -8.457196435188e-01, 1.797693134862e+308, 5.3842e-02, 1.9388e-03, - 2DIAGNOSTIC, 10, -8.476045901414e-01, 1.127498441910e-02, 6.0496e-02, 6.6538e-03, - 2DIAGNOSTIC, 11, -8.476045880995e-01, 9.867530674871e-03, 6.2204e-02, 1.7080e-03, - 2DIAGNOSTIC, 12, -8.476047825193e-01, 7.860613383450e-03, 6.3887e-02, 1.6832e-03, - 2DIAGNOSTIC, 13, -8.476051112151e-01, 5.527627562263e-03, 6.5557e-02, 1.6701e-03, - 2DIAGNOSTIC, 14, -8.476056668478e-01, 3.263290491975e-03, 6.7052e-02, 1.4951e-03, - 2DIAGNOSTIC, 15, -8.476066058812e-01, 1.810038412769e-03, 6.8524e-02, 1.4720e-03, - 2DIAGNOSTIC, 16, -8.476081922500e-01, 5.597209032746e-04, 7.0007e-02, 1.4830e-03, - 2DIAGNOSTIC, 17, -8.476108704317e-01, 2.073091558565e-04, 7.1450e-02, 1.4429e-03, - 2DIAGNOSTIC, 18, -8.476153868122e-01, 3.870274738219e-05, 7.2968e-02, 1.5180e-03, - 2DIAGNOSTIC, 19, -8.476229886949e-01, 2.352676927046e-06, 7.4524e-02, 1.5559e-03, - 2DIAGNOSTIC, 20, -8.476357433359e-01, 2.634635529158e-06, 7.6021e-02, 1.4970e-03, - 2DIAGNOSTIC, 21, -8.476570288675e-01, 3.144207177390e-06, 7.7525e-02, 1.5039e-03, - 2DIAGNOSTIC, 22, -8.476922324340e-01, 4.009282755429e-06, 7.8985e-02, 1.4601e-03, - 2DIAGNOSTIC, 23, -8.477488909227e-01, 5.407984357490e-06, 8.0469e-02, 1.4839e-03, - 2DIAGNOSTIC, 24, -8.478388217655e-01, 7.600118219139e-06, 8.2057e-02, 1.5879e-03, - 2DIAGNOSTIC, 25, -8.479749738505e-01, 1.089491545868e-05, 8.3993e-02, 1.9360e-03, - 2DIAGNOSTIC, 26, -8.481670146212e-01, 1.556132785431e-05, 8.5996e-02, 2.0030e-03, - 2DIAGNOSTIC, 27, -8.483876568164e-01, 2.133148568181e-05, 8.7845e-02, 1.8489e-03, - 2DIAGNOSTIC, 28, -8.485982742589e-01, 2.738628424841e-05, 8.9761e-02, 1.9162e-03, - 2DIAGNOSTIC, 29, -8.488079727930e-01, 3.308675125170e-05, 9.1733e-02, 1.9720e-03, - 2DIAGNOSTIC, 30, -8.488741657417e-01, 3.625229575468e-05, 9.3248e-02, 1.5149e-03, - 2DIAGNOSTIC, 31, -8.480204380318e-01, 2.668839746375e-05, 9.4697e-02, 1.4491e-03, - 2DIAGNOSTIC, 32, -8.471985192044e-01, 7.157016739180e-06, 9.6149e-02, 1.4520e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.481203359049e-01, 1.797693134862e+308, 1.4113e-01, 4.4978e-02, - 2DIAGNOSTIC, 2, -4.478202495697e-01, 1.797693134862e+308, 1.4352e-01, 2.3892e-03, - 2DIAGNOSTIC, 3, -4.490168465774e-01, 1.797693134862e+308, 1.4596e-01, 2.4459e-03, - 2DIAGNOSTIC, 4, -4.532786084927e-01, 1.797693134862e+308, 1.4829e-01, 2.3291e-03, - 2DIAGNOSTIC, 5, -4.568442709667e-01, 1.797693134862e+308, 1.5050e-01, 2.2058e-03, - 2DIAGNOSTIC, 6, -4.665791241327e-01, 1.797693134862e+308, 1.5267e-01, 2.1780e-03, - 2DIAGNOSTIC, 7, -4.822070700782e-01, 1.797693134862e+308, 1.5536e-01, 2.6820e-03, - 2DIAGNOSTIC, 8, -4.790774930247e-01, 1.797693134862e+308, 1.5740e-01, 2.0421e-03, - 2DIAGNOSTIC, 9, -4.889465612600e-01, 1.797693134862e+308, 1.6030e-01, 2.8968e-03, - 2DIAGNOSTIC, 10, -4.934806300232e-01, 7.161554261710e-03, 1.6253e-01, 2.2330e-03, - 2DIAGNOSTIC, 11, -4.949602442205e-01, 6.831739283489e-03, 1.6478e-01, 2.2490e-03, - 2DIAGNOSTIC, 12, -5.004309405030e-01, 6.201996162843e-03, 1.6699e-01, 2.2130e-03, - 2DIAGNOSTIC, 13, -5.126828280413e-01, 5.725076725023e-03, 1.6923e-01, 2.2390e-03, - 2DIAGNOSTIC, 14, -5.199972345739e-01, 5.283861502033e-03, 1.7149e-01, 2.2612e-03, - 2DIAGNOSTIC, 15, -5.491677175966e-01, 5.684469991204e-03, 1.7407e-01, 2.5799e-03, - 2DIAGNOSTIC, 16, -5.790804909023e-01, 6.897560449808e-03, 1.7632e-01, 2.2540e-03, - 2DIAGNOSTIC, 17, -5.933080826848e-01, 8.303081588287e-03, 1.7889e-01, 2.5680e-03, - 2DIAGNOSTIC, 18, -6.368644188440e-01, 9.991119812848e-03, 1.8209e-01, 3.1979e-03, - 2DIAGNOSTIC, 19, -6.594525594720e-01, 1.144370761953e-02, 1.8566e-01, 3.5729e-03, - 2DIAGNOSTIC, 20, -6.622421470624e-01, 1.185289927865e-02, 1.8929e-01, 3.6302e-03, - 2DIAGNOSTIC, 21, -6.632747865400e-01, 1.119586695665e-02, 1.9171e-01, 2.4199e-03, - 2DIAGNOSTIC, 22, -6.674879543536e-01, 9.813812587516e-03, 1.9481e-01, 3.0990e-03, - 2DIAGNOSTIC, 23, -6.699501781880e-01, 8.002303483764e-03, 1.9718e-01, 2.3699e-03, - 2DIAGNOSTIC, 24, -6.707490453981e-01, 5.793431532004e-03, 1.9945e-01, 2.2650e-03, - 2DIAGNOSTIC, 25, -6.720454648102e-01, 3.891978169318e-03, 2.0180e-01, 2.3479e-03, - 2DIAGNOSTIC, 26, -6.837562615120e-01, 2.634333306565e-03, 2.0535e-01, 3.5532e-03, - 2DIAGNOSTIC, 27, -6.894203175792e-01, 1.594117161788e-03, 2.0827e-01, 2.9249e-03, - 2DIAGNOSTIC, 28, -6.908438374061e-01, 1.293994099188e-03, 2.1085e-01, 2.5771e-03, - 2DIAGNOSTIC, 29, -6.925240255538e-01, 1.319818744518e-03, 2.1316e-01, 2.3100e-03, - 2DIAGNOSTIC, 30, -6.928292978286e-01, 1.271901797876e-03, 2.1573e-01, 2.5661e-03, - 2DIAGNOSTIC, 31, -6.929555946752e-01, 1.122422466448e-03, 2.1849e-01, 2.7609e-03, - 2DIAGNOSTIC, 32, -6.930653969944e-01, 9.423462347480e-04, 2.2121e-01, 2.7230e-03, - 2DIAGNOSTIC, 33, -6.931280936235e-01, 7.257803117393e-04, 2.2394e-01, 2.7299e-03, - 2DIAGNOSTIC, 34, -6.931094036530e-01, 4.693020571749e-04, 2.2632e-01, 2.3842e-03, - 2DIAGNOSTIC, 35, -6.931241767120e-01, 2.003717677451e-04, 2.2866e-01, 2.3401e-03, - 2DIAGNOSTIC, 36, -6.934772149599e-01, 8.922745481531e-05, 2.3140e-01, 2.7308e-03, - 2DIAGNOSTIC, 37, -6.939278879920e-01, 5.528825835711e-05, 2.3653e-01, 5.1332e-03, - 2DIAGNOSTIC, 38, -6.938992941954e-01, 3.507617807466e-05, 2.3932e-01, 2.7952e-03, - 2DIAGNOSTIC, 39, -6.938199537044e-01, 3.234313648032e-05, 2.4239e-01, 3.0620e-03, - 2DIAGNOSTIC, 40, -6.938388158497e-01, 3.068327814418e-05, 2.4474e-01, 2.3561e-03, - 2DIAGNOSTIC, 41, -6.937843278761e-01, 2.696753281873e-05, 2.4702e-01, 2.2759e-03, - 2DIAGNOSTIC, 42, -6.938332719473e-01, 2.263004855909e-05, 2.4933e-01, 2.3081e-03, - 2DIAGNOSTIC, 43, -6.939105545829e-01, 1.801076337340e-05, 2.5173e-01, 2.4052e-03, - 2DIAGNOSTIC, 44, -6.939988583001e-01, 1.283643941650e-05, 2.5410e-01, 2.3730e-03, - 2DIAGNOSTIC, 45, -6.944519628988e-01, 1.154022578767e-05, 2.5706e-01, 2.9550e-03, - 2DIAGNOSTIC, 46, -6.944728554695e-01, 1.279624599072e-05, 2.5934e-01, 2.2810e-03, - 2DIAGNOSTIC, 47, -6.945850381963e-01, 1.842326441905e-05, 2.6194e-01, 2.5971e-03, - 2DIAGNOSTIC, 48, -6.946063578060e-01, 2.207041192208e-05, 2.6539e-01, 3.4502e-03, - 2DIAGNOSTIC, 49, -6.946981267947e-01, 2.360241972995e-05, 2.6763e-01, 2.2469e-03, - 2DIAGNOSTIC, 50, -6.946350368105e-01, 2.242622820186e-05, 2.6990e-01, 2.2690e-03, - 2DIAGNOSTIC, 51, -6.946490993429e-01, 1.887762617264e-05, 2.7217e-01, 2.2652e-03, - 2DIAGNOSTIC, 52, -6.946557641432e-01, 1.426762205447e-05, 2.7452e-01, 2.3539e-03, - 2DIAGNOSTIC, 53, -6.946739658866e-01, 9.378436591784e-06, 2.7753e-01, 3.0031e-03, - 2DIAGNOSTIC, 54, -6.947038508500e-01, 4.743447378684e-06, 2.7996e-01, 2.4319e-03, - 2DIAGNOSTIC, 55, -6.946255560179e-01, 2.999397619583e-06, 2.8254e-01, 2.5792e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.295881024610e-01, 1.797693134862e+308, 3.5222e-01, 6.9688e-02, - 2DIAGNOSTIC, 2, -5.298312839389e-01, 1.797693134862e+308, 3.6435e-01, 1.2130e-02, - 2DIAGNOSTIC, 3, -5.300761735687e-01, 1.797693134862e+308, 3.7551e-01, 1.1154e-02, - 2DIAGNOSTIC, 4, -5.303427879172e-01, 1.797693134862e+308, 3.8569e-01, 1.0180e-02, - 2DIAGNOSTIC, 5, -5.310087282727e-01, 1.797693134862e+308, 3.9715e-01, 1.1466e-02, - 2DIAGNOSTIC, 6, -5.318363970157e-01, 1.797693134862e+308, 4.0864e-01, 1.1485e-02, - 2DIAGNOSTIC, 7, -5.320983854291e-01, 1.797693134862e+308, 4.2156e-01, 1.2920e-02, - 2DIAGNOSTIC, 8, -5.322381938151e-01, 1.797693134862e+308, 4.3383e-01, 1.2266e-02, - 2DIAGNOSTIC, 9, -5.325374597933e-01, 1.797693134862e+308, 4.4423e-01, 1.0402e-02, - 2DIAGNOSTIC, 10, -5.326449089106e-01, 4.255879098932e-04, 4.6101e-01, 1.6787e-02, - 2DIAGNOSTIC, 11, -5.326539364698e-01, 3.542102471295e-04, 4.7421e-01, 1.3193e-02, - 2DIAGNOSTIC, 12, -5.326639357692e-01, 2.747632409383e-04, 4.8578e-01, 1.1570e-02, - 2DIAGNOSTIC, 13, -5.326674691209e-01, 1.936691341860e-04, 4.9740e-01, 1.1622e-02, - 2DIAGNOSTIC, 14, -5.327154080402e-01, 1.184207497645e-04, 5.1033e-01, 1.2929e-02, - 2DIAGNOSTIC, 15, -5.327772495947e-01, 6.775699121091e-05, 5.2204e-01, 1.1716e-02, - 2DIAGNOSTIC, 16, -5.328698291521e-01, 4.806958948839e-05, 5.3260e-01, 1.0557e-02, - 2DIAGNOSTIC, 17, -5.330350491964e-01, 3.988981728947e-05, 5.4962e-01, 1.7020e-02, - 2DIAGNOSTIC, 18, -5.330366353965e-01, 3.300906183612e-05, 5.6141e-01, 1.1789e-02, - 2DIAGNOSTIC, 19, -5.330258314236e-01, 3.205914149104e-05, 5.7211e-01, 1.0697e-02, - 2DIAGNOSTIC, 20, -5.330228794911e-01, 3.120912033674e-05, 5.8307e-01, 1.0958e-02, - 2DIAGNOSTIC, 21, -5.330396811528e-01, 2.829015630353e-05, 5.9331e-01, 1.0242e-02, - 2DIAGNOSTIC, 22, -5.330560481450e-01, 2.372054809096e-05, 6.0478e-01, 1.1475e-02, - 2DIAGNOSTIC, 23, -5.331467225526e-01, 1.965162912578e-05, 6.1763e-01, 1.2852e-02, - 2DIAGNOSTIC, 24, -5.331666938219e-01, 1.572354850808e-05, 6.2941e-01, 1.1778e-02, - 2DIAGNOSTIC, 25, -5.331804697968e-01, 1.237744150930e-05, 6.4256e-01, 1.3146e-02, - 2DIAGNOSTIC, 26, -5.331763568478e-01, 9.981552508607e-06, 6.5432e-01, 1.1763e-02, - 2DIAGNOSTIC, 27, -5.331815568854e-01, 1.030282496108e-05, 6.6452e-01, 1.0196e-02, - 2DIAGNOSTIC, 28, -5.331759880929e-01, 9.643949611143e-06, 6.7591e-01, 1.1391e-02, - 2DIAGNOSTIC, 29, -5.331768259663e-01, 8.043444492269e-06, 6.8578e-01, 9.8729e-03, - 2DIAGNOSTIC, 30, -5.331697598615e-01, 5.730847709981e-06, 6.9569e-01, 9.9080e-03, - 2DIAGNOSTIC, 31, -5.332193902379e-01, 4.287987539854e-06, 7.0952e-01, 1.3833e-02, - 2DIAGNOSTIC, 32, -5.332253928137e-01, 2.938294103520e-06, 7.2109e-01, 1.1569e-02, - 2DIAGNOSTIC, 33, -5.332117368609e-01, 2.730486599427e-06, 7.3237e-01, 1.1279e-02, - 2DIAGNOSTIC, 34, -5.332088752375e-01, 2.650765418315e-06, 7.4217e-01, 9.8028e-03, - 2DIAGNOSTIC, 35, -5.332021314439e-01, 2.520509919189e-06, 7.5204e-01, 9.8698e-03, - 2DIAGNOSTIC, 36, -5.332137035687e-01, 2.338618531494e-06, 7.6408e-01, 1.2034e-02, - 2DIAGNOSTIC, 37, -5.332289842080e-01, 2.314358633498e-06, 7.7587e-01, 1.1798e-02, - 2DIAGNOSTIC, 38, -5.332327457200e-01, 2.134739100271e-06, 7.8723e-01, 1.1354e-02, - 2DIAGNOSTIC, 39, -5.332550892072e-01, 2.175582359147e-06, 7.9847e-01, 1.1240e-02, - 2DIAGNOSTIC, 40, -5.332648507775e-01, 2.096220755126e-06, 8.0981e-01, 1.1340e-02, - 2DIAGNOSTIC, 41, -5.332581640220e-01, 2.448298250579e-06, 8.2161e-01, 1.1799e-02, - 2DIAGNOSTIC, 42, -5.332468135180e-01, 2.563734768694e-06, 8.3297e-01, 1.1363e-02, - 2DIAGNOSTIC, 43, -5.332545569827e-01, 2.432741855761e-06, 8.4456e-01, 1.1591e-02, - 2DIAGNOSTIC, 44, -5.332725353388e-01, 2.325466619768e-06, 8.5617e-01, 1.1608e-02, - 2DIAGNOSTIC, 45, -5.332771430578e-01, 2.033593292795e-06, 8.6610e-01, 9.9308e-03, - 2DIAGNOSTIC, 46, -5.332699080484e-01, 1.681353835242e-06, 8.7616e-01, 1.0056e-02, - 2DIAGNOSTIC, 47, -5.332946350443e-01, 1.715637923862e-06, 8.8871e-01, 1.2553e-02, - 2DIAGNOSTIC, 48, -5.333242871577e-01, 2.003685456709e-06, 8.9863e-01, 9.9189e-03, - 2DIAGNOSTIC, 49, -5.333684881153e-01, 2.859008481081e-06, 9.0864e-01, 1.0009e-02, - 2DIAGNOSTIC, 50, -5.334222743363e-01, 4.141617985984e-06, 9.2255e-01, 1.3914e-02, - 2DIAGNOSTIC, 51, -5.334234255144e-01, 4.981987048094e-06, 9.3658e-01, 1.4027e-02, - 2DIAGNOSTIC, 52, -5.334430364971e-01, 5.465969442949e-06, 9.4810e-01, 1.1522e-02, - 2DIAGNOSTIC, 53, -5.334345793588e-01, 5.448565546257e-06, 9.5856e-01, 1.0463e-02, - 2DIAGNOSTIC, 54, -5.335432624597e-01, 6.213814715508e-06, 9.7033e-01, 1.1771e-02, - 2DIAGNOSTIC, 55, -5.335667704634e-01, 6.654879448464e-06, 9.8317e-01, 1.2832e-02, - 2DIAGNOSTIC, 56, -5.335622244101e-01, 6.389738036506e-06, 9.9346e-01, 1.0294e-02, - 2DIAGNOSTIC, 57, -5.335571003525e-01, 5.780822999169e-06, 1.0063e+00, 1.2869e-02, - 2DIAGNOSTIC, 58, -5.335513961684e-01, 4.906904008884e-06, 1.0186e+00, 1.2292e-02, - 2DIAGNOSTIC, 59, -5.335455624938e-01, 3.962710960009e-06, 1.0301e+00, 1.1448e-02, - 2DIAGNOSTIC, 60, -5.335468431533e-01, 3.204016536501e-06, 1.0406e+00, 1.0512e-02, - 2DIAGNOSTIC, 61, -5.335489707583e-01, 2.249717391219e-06, 1.0521e+00, 1.1529e-02, - 2DIAGNOSTIC, 62, -5.335520439678e-01, 1.371638688803e-06, 1.0632e+00, 1.1077e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.450971274075e-01, 1.797693134862e+308, 1.2307e+00, 1.6752e-01, - Elapsed time (stage 0): 1.2593e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.845833627218e-01, 1.797693134862e+308, 3.8190e-02, 3.8190e-02, - 2DIAGNOSTIC, 2, -9.864723645066e-01, 1.797693134862e+308, 3.9446e-02, 1.2560e-03, - 2DIAGNOSTIC, 3, -9.894922149113e-01, 1.797693134862e+308, 4.0680e-02, 1.2338e-03, - 2DIAGNOSTIC, 4, -9.930005196894e-01, 1.797693134862e+308, 4.2063e-02, 1.3831e-03, - 2DIAGNOSTIC, 5, -1.005020956666e+00, 1.797693134862e+308, 4.4033e-02, 1.9701e-03, - 2DIAGNOSTIC, 6, -1.012739684563e+00, 1.797693134862e+308, 4.6823e-02, 2.7900e-03, - 2DIAGNOSTIC, 7, -1.012849474605e+00, 1.797693134862e+308, 4.8111e-02, 1.2879e-03, - 2DIAGNOSTIC, 8, -1.013241330079e+00, 1.797693134862e+308, 4.9420e-02, 1.3092e-03, - 2DIAGNOSTIC, 9, -1.013885339903e+00, 1.797693134862e+308, 5.0717e-02, 1.2970e-03, - 2DIAGNOSTIC, 10, -1.014915189925e+00, 2.313333623765e-03, 5.2241e-02, 1.5240e-03, - 2DIAGNOSTIC, 11, -1.016464749854e+00, 1.823106004331e-03, 5.3756e-02, 1.5149e-03, - 2DIAGNOSTIC, 12, -1.018695156262e+00, 1.351630325819e-03, 5.5264e-02, 1.5080e-03, - 2DIAGNOSTIC, 13, -1.021319179716e+00, 9.572381721791e-04, 5.6817e-02, 1.5531e-03, - 2DIAGNOSTIC, 14, -1.021566928310e+00, 6.031906847193e-04, 5.8530e-02, 1.7130e-03, - 2DIAGNOSTIC, 15, -1.025006775699e+00, 5.291795133020e-04, 6.0231e-02, 1.7009e-03, - 2DIAGNOSTIC, 16, -1.029077301331e+00, 6.221458852379e-04, 6.2196e-02, 1.9650e-03, - 2DIAGNOSTIC, 17, -1.029848163385e+00, 6.596514811972e-04, 6.3664e-02, 1.4679e-03, - 2DIAGNOSTIC, 18, -1.028966498118e+00, 6.253650224429e-04, 6.5152e-02, 1.4880e-03, - 2DIAGNOSTIC, 19, -1.035307590517e+00, 6.414132176129e-04, 6.7081e-02, 1.9290e-03, - 2DIAGNOSTIC, 20, -1.039385054886e+00, 6.646557391404e-04, 6.8540e-02, 1.4589e-03, - 2DIAGNOSTIC, 21, -1.052725439563e+00, 8.195772841449e-04, 7.0242e-02, 1.7018e-03, - 2DIAGNOSTIC, 22, -1.056775744358e+00, 9.597761661501e-04, 7.2917e-02, 2.6748e-03, - 2DIAGNOSTIC, 23, -1.057248001776e+00, 1.037748166273e-03, 7.4395e-02, 1.4789e-03, - 2DIAGNOSTIC, 24, -1.057527684808e+00, 1.019222749468e-03, 7.5911e-02, 1.5159e-03, - 2DIAGNOSTIC, 25, -1.059154359486e+00, 9.607957007002e-04, 7.7407e-02, 1.4961e-03, - 2DIAGNOSTIC, 26, -1.059354927301e+00, 8.601142371983e-04, 7.9314e-02, 1.9069e-03, - 2DIAGNOSTIC, 27, -1.058482416771e+00, 6.860006948803e-04, 8.1054e-02, 1.7400e-03, - 2DIAGNOSTIC, 28, -1.058838600003e+00, 4.561224760818e-04, 8.2520e-02, 1.4660e-03, - 2DIAGNOSTIC, 29, -1.058132496993e+00, 2.541450114119e-04, 8.4003e-02, 1.4832e-03, - 2DIAGNOSTIC, 30, -1.058773834816e+00, 8.238251943438e-05, 8.5494e-02, 1.4901e-03, - 2DIAGNOSTIC, 31, -1.057975546803e+00, 2.478573975936e-05, 8.6948e-02, 1.4541e-03, - 2DIAGNOSTIC, 32, -1.058494100424e+00, 8.417519212753e-06, 8.8413e-02, 1.4651e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.267722439633e-01, 1.797693134862e+308, 1.3328e-01, 4.4863e-02, - 2DIAGNOSTIC, 2, -7.270017541581e-01, 1.797693134862e+308, 1.3599e-01, 2.7120e-03, - 2DIAGNOSTIC, 3, -7.286061881108e-01, 1.797693134862e+308, 1.3882e-01, 2.8319e-03, - 2DIAGNOSTIC, 4, -7.329941805390e-01, 1.797693134862e+308, 1.4127e-01, 2.4531e-03, - 2DIAGNOSTIC, 5, -7.374807801838e-01, 1.797693134862e+308, 1.4360e-01, 2.3232e-03, - 2DIAGNOSTIC, 6, -7.404872155940e-01, 1.797693134862e+308, 1.4578e-01, 2.1832e-03, - 2DIAGNOSTIC, 7, -7.451845386063e-01, 1.797693134862e+308, 1.4817e-01, 2.3880e-03, - 2DIAGNOSTIC, 8, -7.537701368443e-01, 1.797693134862e+308, 1.5321e-01, 5.0440e-03, - 2DIAGNOSTIC, 9, -7.538744928576e-01, 1.797693134862e+308, 1.5527e-01, 2.0571e-03, - 2DIAGNOSTIC, 10, -7.540606631348e-01, 2.869056506563e-03, 1.5799e-01, 2.7180e-03, - 2DIAGNOSTIC, 11, -7.541318944025e-01, 2.526597347727e-03, 1.6038e-01, 2.3921e-03, - 2DIAGNOSTIC, 12, -7.543829428907e-01, 2.030132599080e-03, 1.6309e-01, 2.7101e-03, - 2DIAGNOSTIC, 13, -7.546641905967e-01, 1.478215418152e-03, 1.6547e-01, 2.3811e-03, - 2DIAGNOSTIC, 14, -7.549316203453e-01, 9.978569439062e-04, 1.6789e-01, 2.4159e-03, - 2DIAGNOSTIC, 15, -7.555828537712e-01, 6.249701500904e-04, 1.7026e-01, 2.3732e-03, - 2DIAGNOSTIC, 16, -7.564113982751e-01, 3.325689186133e-04, 1.7262e-01, 2.3608e-03, - 2DIAGNOSTIC, 17, -7.578532478611e-01, 1.763365932621e-04, 1.7498e-01, 2.3649e-03, - 2DIAGNOSTIC, 18, -7.596978523144e-01, 2.414749693711e-04, 1.7764e-01, 2.6541e-03, - 2DIAGNOSTIC, 19, -7.603218789103e-01, 2.914078055402e-04, 1.8000e-01, 2.3570e-03, - 2DIAGNOSTIC, 20, -7.605613131359e-01, 3.177933706973e-04, 1.8240e-01, 2.4090e-03, - 2DIAGNOSTIC, 21, -7.609613013449e-01, 3.208719612958e-04, 1.8510e-01, 2.6910e-03, - 2DIAGNOSTIC, 22, -7.612806677426e-01, 3.032317514396e-04, 1.8781e-01, 2.7101e-03, - 2DIAGNOSTIC, 23, -7.612708688520e-01, 2.629839714712e-04, 1.9053e-01, 2.7280e-03, - 2DIAGNOSTIC, 24, -7.616815643306e-01, 2.124390598865e-04, 1.9570e-01, 5.1651e-03, - 2DIAGNOSTIC, 25, -7.619234092737e-01, 1.598396530711e-04, 1.9908e-01, 3.3851e-03, - 2DIAGNOSTIC, 26, -7.620085174638e-01, 1.094394421371e-04, 2.0249e-01, 3.4020e-03, - 2DIAGNOSTIC, 27, -7.620668756978e-01, 7.306414059381e-05, 2.0538e-01, 2.8930e-03, - 2DIAGNOSTIC, 28, -7.620980839296e-01, 5.775266195210e-05, 2.0820e-01, 2.8250e-03, - 2DIAGNOSTIC, 29, -7.620456587992e-01, 4.556654906997e-05, 2.1065e-01, 2.4440e-03, - 2DIAGNOSTIC, 30, -7.620109226473e-01, 3.243973209766e-05, 2.1324e-01, 2.5921e-03, - 2DIAGNOSTIC, 31, -7.620826761072e-01, 2.289202921257e-05, 2.1632e-01, 3.0770e-03, - 2DIAGNOSTIC, 32, -7.621704790780e-01, 1.672965101433e-05, 2.1945e-01, 3.1309e-03, - 2DIAGNOSTIC, 33, -7.620920921696e-01, 8.329443506289e-06, 2.2289e-01, 3.4380e-03, - 2DIAGNOSTIC, 34, -7.621197152365e-01, 4.594821966297e-06, 2.2630e-01, 3.4182e-03, - 2DIAGNOSTIC, 35, -7.621467672803e-01, 3.613419562731e-06, 2.2941e-01, 3.1111e-03, - 2DIAGNOSTIC, 36, -7.621276889860e-01, 3.066612741454e-06, 2.3225e-01, 2.8350e-03, - 2DIAGNOSTIC, 37, -7.621571598771e-01, 3.214147164261e-06, 2.3506e-01, 2.8059e-03, - 2DIAGNOSTIC, 38, -7.624236911441e-01, 6.105374786038e-06, 2.3837e-01, 3.3140e-03, - 2DIAGNOSTIC, 39, -7.624702722144e-01, 8.245266902841e-06, 2.4088e-01, 2.5101e-03, - 2DIAGNOSTIC, 40, -7.625149928357e-01, 9.659572159669e-06, 2.4367e-01, 2.7869e-03, - 2DIAGNOSTIC, 41, -7.625812627293e-01, 1.143241790280e-05, 2.4677e-01, 3.1059e-03, - 2DIAGNOSTIC, 42, -7.625821254637e-01, 1.290644973291e-05, 2.4993e-01, 3.1610e-03, - 2DIAGNOSTIC, 43, -7.625391928967e-01, 1.205499451611e-05, 2.5268e-01, 2.7442e-03, - 2DIAGNOSTIC, 44, -7.624918289951e-01, 9.991736960056e-06, 2.5507e-01, 2.3940e-03, - 2DIAGNOSTIC, 45, -7.624648151724e-01, 7.176719308419e-06, 2.5777e-01, 2.7020e-03, - 2DIAGNOSTIC, 46, -7.624324305331e-01, 3.457200191005e-06, 2.6081e-01, 3.0370e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.762419655360e-01, 1.797693134862e+308, 3.2731e-01, 6.6503e-02, - 2DIAGNOSTIC, 2, -5.767502693116e-01, 1.797693134862e+308, 3.3851e-01, 1.1198e-02, - 2DIAGNOSTIC, 3, -5.774327882373e-01, 1.797693134862e+308, 3.4976e-01, 1.1249e-02, - 2DIAGNOSTIC, 4, -5.782954686333e-01, 1.797693134862e+308, 3.6104e-01, 1.1278e-02, - 2DIAGNOSTIC, 5, -5.791821603349e-01, 1.797693134862e+308, 3.7231e-01, 1.1269e-02, - 2DIAGNOSTIC, 6, -5.803443122049e-01, 1.797693134862e+308, 3.8338e-01, 1.1073e-02, - 2DIAGNOSTIC, 7, -5.819174551858e-01, 1.797693134862e+308, 3.9658e-01, 1.3202e-02, - 2DIAGNOSTIC, 8, -5.840064454464e-01, 1.797693134862e+308, 4.0889e-01, 1.2309e-02, - 2DIAGNOSTIC, 9, -5.848120297722e-01, 1.797693134862e+308, 4.2113e-01, 1.2234e-02, - 2DIAGNOSTIC, 10, -5.865595067244e-01, 1.171185788828e-03, 4.3406e-01, 1.2929e-02, - 2DIAGNOSTIC, 11, -5.874123062976e-01, 1.146433013801e-03, 4.5127e-01, 1.7217e-02, - 2DIAGNOSTIC, 12, -5.875159990935e-01, 1.047343060039e-03, 4.6396e-01, 1.2689e-02, - 2DIAGNOSTIC, 13, -5.877183880398e-01, 9.024630998574e-04, 4.7574e-01, 1.1782e-02, - 2DIAGNOSTIC, 14, -5.879509827925e-01, 7.347657493040e-04, 4.8934e-01, 1.3602e-02, - 2DIAGNOSTIC, 15, -5.886311094430e-01, 5.730696365899e-04, 5.0229e-01, 1.2943e-02, - 2DIAGNOSTIC, 16, -5.888718385491e-01, 4.208899468780e-04, 5.1679e-01, 1.4503e-02, - 2DIAGNOSTIC, 17, -5.890427622028e-01, 2.975421838158e-04, 5.2819e-01, 1.1398e-02, - 2DIAGNOSTIC, 18, -5.892837641443e-01, 2.241516664079e-04, 5.4163e-01, 1.3438e-02, - 2DIAGNOSTIC, 19, -5.895824653726e-01, 1.650375923577e-04, 5.5493e-01, 1.3300e-02, - 2DIAGNOSTIC, 20, -5.898160449051e-01, 1.439942452508e-04, 5.6814e-01, 1.3208e-02, - 2DIAGNOSTIC, 21, -5.898448918194e-01, 1.320427844432e-04, 5.8396e-01, 1.5828e-02, - 2DIAGNOSTIC, 22, -5.898413952459e-01, 1.114443161467e-04, 5.9567e-01, 1.1704e-02, - 2DIAGNOSTIC, 23, -5.898413818073e-01, 8.671890318538e-05, 6.0924e-01, 1.3577e-02, - 2DIAGNOSTIC, 24, -5.898617486402e-01, 6.078152236173e-05, 6.2234e-01, 1.3094e-02, - 2DIAGNOSTIC, 25, -5.898723542511e-01, 4.463194652098e-05, 6.3376e-01, 1.1423e-02, - 2DIAGNOSTIC, 26, -5.898703258840e-01, 3.013887337425e-05, 6.4691e-01, 1.3146e-02, - 2DIAGNOSTIC, 27, -5.898974469976e-01, 1.757963411111e-05, 6.5966e-01, 1.2748e-02, - 2DIAGNOSTIC, 28, -5.898982500038e-01, 8.461852517030e-06, 6.7245e-01, 1.2797e-02, - 2DIAGNOSTIC, 29, -5.899028488636e-01, 4.247392388926e-06, 7.1106e-01, 3.8604e-02, - 2DIAGNOSTIC, 30, -5.899028488634e-01, 3.779582590936e-06, 7.4032e-01, 2.9262e-02, - 2DIAGNOSTIC, 31, -5.899028488634e-01, 3.542498282112e-06, 7.5390e-01, 1.3583e-02, - 2DIAGNOSTIC, 32, -5.899028488634e-01, 3.030163109159e-06, 7.6801e-01, 1.4105e-02, - 2DIAGNOSTIC, 33, -5.899028488634e-01, 2.347162650858e-06, 7.8506e-01, 1.7051e-02, - 2DIAGNOSTIC, 34, -5.899028488634e-01, 1.864385442758e-06, 7.9843e-01, 1.3378e-02, - 2DIAGNOSTIC, 35, -5.899028488634e-01, 1.473598339831e-06, 8.1350e-01, 1.5068e-02, - 2DIAGNOSTIC, 36, -5.899028488634e-01, 1.014776546480e-06, 8.2625e-01, 1.2746e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.904336785157e-01, 1.797693134862e+308, 1.0069e+00, 1.8061e-01, - Elapsed time (stage 1): 1.0307e+00 - - -Total elapsed time: 2.2912e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 21:58:09 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 28 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 62 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 85.93% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 85.93% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[14688 8315 18649 367 7629 0 216 0 2224 558 371 296 - 0 402 0 1084 4131 1322 1769 305 577 0 173 0 - 0 176 0 0] -[195155 46121 23800 6002 4538 1332 2227 2532 2411 2094 - 1806 3142 1551 1625 1042 913 919 969 359 180 - 458 1170 158 172 200 271 0 0] -[ 0 10833 0 0 3222 680 0 0 6745 26080 0 10819 - 0 0 4590 0 0 0 5645 15393 0 10090 1044 3413 - 0 0 0 0] -[ 3250 226 6543 0 6091 0 1174 1752 169 129941 - 0 367 846 272 139735 3462 0 2240 313 1108 - 972 262 405 325 2551 3399 0 2067] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:05:57 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:06:04 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:09:52 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:09:52 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:09:52 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:10:02 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:10:05 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC007 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:10:17 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:10:41 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:12:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:12:28 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:13:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:13:45 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x562cae11dd20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [75.2585, 126.66, -114.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562cadf94730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff572642010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x562cae121020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562cae1270c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff56ef83010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x562cae137840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [75.2585, 126.66, -114.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562cae123890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff56a2af010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x562cae13b3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562cae12a130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7ff566bf0010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.567032524783e-01, 1.797693134862e+308, 2.3505e-01, 2.3505e-01, - 2DIAGNOSTIC, 2, -4.577963323436e-01, 1.797693134862e+308, 2.3625e-01, 1.1930e-03, - 2DIAGNOSTIC, 3, -4.604083287192e-01, 1.797693134862e+308, 2.3741e-01, 1.1671e-03, - 2DIAGNOSTIC, 4, -4.660779907767e-01, 1.797693134862e+308, 2.3858e-01, 1.1661e-03, - 2DIAGNOSTIC, 5, -4.741742915104e-01, 1.797693134862e+308, 2.3985e-01, 1.2760e-03, - 2DIAGNOSTIC, 6, -4.815729797478e-01, 1.797693134862e+308, 2.4103e-01, 1.1721e-03, - 2DIAGNOSTIC, 7, -4.826237827113e-01, 1.797693134862e+308, 2.4218e-01, 1.1520e-03, - 2DIAGNOSTIC, 8, -4.936053015759e-01, 1.797693134862e+308, 2.4364e-01, 1.4572e-03, - 2DIAGNOSTIC, 9, -5.100368825387e-01, 1.797693134862e+308, 2.4539e-01, 1.7581e-03, - 2DIAGNOSTIC, 10, -5.116468156185e-01, 7.877225549563e-03, 2.4797e-01, 2.5749e-03, - 2DIAGNOSTIC, 11, -5.118459872704e-01, 7.443440441890e-03, 2.4974e-01, 1.7679e-03, - 2DIAGNOSTIC, 12, -5.122279402314e-01, 6.509475731255e-03, 2.5149e-01, 1.7490e-03, - 2DIAGNOSTIC, 13, -5.132553286806e-01, 5.296228163635e-03, 2.5324e-01, 1.7512e-03, - 2DIAGNOSTIC, 14, -5.145855624091e-01, 4.056194489686e-03, 2.5477e-01, 1.5349e-03, - 2DIAGNOSTIC, 15, -5.156295655325e-01, 2.968205082142e-03, 2.5655e-01, 1.7791e-03, - 2DIAGNOSTIC, 16, -5.190761151681e-01, 2.154903274757e-03, 2.5829e-01, 1.7371e-03, - 2DIAGNOSTIC, 17, -5.342383552566e-01, 1.784229469868e-03, 2.5980e-01, 1.5140e-03, - 2DIAGNOSTIC, 18, -5.497689067844e-01, 2.105222977680e-03, 2.6145e-01, 1.6482e-03, - 2DIAGNOSTIC, 19, -5.638447284486e-01, 3.093764813977e-03, 2.6380e-01, 2.3520e-03, - 2DIAGNOSTIC, 20, -5.661082516892e-01, 3.794863600504e-03, 2.6580e-01, 1.9999e-03, - 2DIAGNOSTIC, 21, -5.795630533970e-01, 4.435540404739e-03, 2.6857e-01, 2.7690e-03, - 2DIAGNOSTIC, 22, -5.811798696139e-01, 4.637269850198e-03, 2.7045e-01, 1.8830e-03, - 2DIAGNOSTIC, 23, -5.834893579753e-01, 4.462733299243e-03, 2.7242e-01, 1.9612e-03, - 2DIAGNOSTIC, 24, -5.829006573538e-01, 3.908780952421e-03, 2.7506e-01, 2.6441e-03, - 2DIAGNOSTIC, 25, -5.840122254932e-01, 3.092087933423e-03, 2.7695e-01, 1.8911e-03, - 2DIAGNOSTIC, 26, -5.866158945872e-01, 2.176916700046e-03, 2.7884e-01, 1.8871e-03, - 2DIAGNOSTIC, 27, -5.862808203249e-01, 1.422755910692e-03, 2.8046e-01, 1.6232e-03, - 2DIAGNOSTIC, 28, -5.866592403150e-01, 8.984542834159e-04, 2.8209e-01, 1.6301e-03, - 2DIAGNOSTIC, 29, -5.869910224492e-01, 5.992662276269e-04, 2.8396e-01, 1.8659e-03, - 2DIAGNOSTIC, 30, -5.872157285286e-01, 3.036140434965e-04, 2.8557e-01, 1.6119e-03, - 2DIAGNOSTIC, 31, -5.872537950660e-01, 2.312417396057e-04, 2.8719e-01, 1.6248e-03, - 2DIAGNOSTIC, 32, -5.893290337674e-01, 2.024926554652e-04, 2.8911e-01, 1.9190e-03, - 2DIAGNOSTIC, 33, -5.898544497360e-01, 2.022906332561e-04, 2.9123e-01, 2.1191e-03, - 2DIAGNOSTIC, 34, -5.896600049162e-01, 1.708392952860e-04, 2.9309e-01, 1.8539e-03, - 2DIAGNOSTIC, 35, -5.915637279682e-01, 1.701365477808e-04, 2.9490e-01, 1.8191e-03, - 2DIAGNOSTIC, 36, -5.922521166479e-01, 2.009053926415e-04, 2.9677e-01, 1.8671e-03, - 2DIAGNOSTIC, 37, -5.927751270620e-01, 2.129638913288e-04, 2.9941e-01, 2.6350e-03, - 2DIAGNOSTIC, 38, -5.934478569444e-01, 2.186658065644e-04, 3.0127e-01, 1.8640e-03, - 2DIAGNOSTIC, 39, -5.932699110735e-01, 2.056737598410e-04, 3.0293e-01, 1.6570e-03, - 2DIAGNOSTIC, 40, -5.930304818182e-01, 1.739736559082e-04, 3.0455e-01, 1.6210e-03, - 2DIAGNOSTIC, 41, -5.927307474803e-01, 1.233739289348e-04, 3.0620e-01, 1.6470e-03, - 2DIAGNOSTIC, 42, -5.933251778775e-01, 9.666300732935e-05, 3.0787e-01, 1.6701e-03, - 2DIAGNOSTIC, 43, -5.945319836468e-01, 8.301284658591e-05, 3.0998e-01, 2.1131e-03, - 2DIAGNOSTIC, 44, -5.942846056132e-01, 5.620085207770e-05, 3.1163e-01, 1.6501e-03, - 2DIAGNOSTIC, 45, -5.959157539091e-01, 6.624783277807e-05, 3.1350e-01, 1.8761e-03, - 2DIAGNOSTIC, 46, -5.957932578577e-01, 7.549318485483e-05, 3.1517e-01, 1.6680e-03, - 2DIAGNOSTIC, 47, -5.976860403294e-01, 1.033399307649e-04, 3.1680e-01, 1.6301e-03, - 2DIAGNOSTIC, 48, -5.992951532159e-01, 1.439126707194e-04, 3.1948e-01, 2.6751e-03, - 2DIAGNOSTIC, 49, -6.009934810776e-01, 1.846689359691e-04, 3.2137e-01, 1.8921e-03, - 2DIAGNOSTIC, 50, -6.017907293979e-01, 2.118630298456e-04, 3.2350e-01, 2.1300e-03, - 2DIAGNOSTIC, 51, -6.016600943122e-01, 2.134453839234e-04, 3.2536e-01, 1.8580e-03, - 2DIAGNOSTIC, 52, -6.019367514830e-01, 2.030361957264e-04, 3.2697e-01, 1.6160e-03, - 2DIAGNOSTIC, 53, -6.014356823095e-01, 1.803118896924e-04, 3.2861e-01, 1.6379e-03, - 2DIAGNOSTIC, 54, -6.023405151243e-01, 1.470729797036e-04, 3.3051e-01, 1.8969e-03, - 2DIAGNOSTIC, 55, -6.036652670986e-01, 1.283871934107e-04, 3.3212e-01, 1.6119e-03, - 2DIAGNOSTIC, 56, -6.057957554026e-01, 1.159091215058e-04, 3.3374e-01, 1.6210e-03, - 2DIAGNOSTIC, 57, -6.066232746657e-01, 1.165634291067e-04, 3.3637e-01, 2.6300e-03, - 2DIAGNOSTIC, 58, -6.085039662888e-01, 1.363128237511e-04, 3.3825e-01, 1.8759e-03, - 2DIAGNOSTIC, 59, -6.092419294297e-01, 1.627167724122e-04, 3.3986e-01, 1.6129e-03, - 2DIAGNOSTIC, 60, -6.097129546249e-01, 1.830702550650e-04, 3.4147e-01, 1.6119e-03, - 2DIAGNOSTIC, 61, -6.099600436326e-01, 1.859853674924e-04, 3.4359e-01, 2.1150e-03, - 2DIAGNOSTIC, 62, -6.101753498749e-01, 1.751913252260e-04, 3.4548e-01, 1.8890e-03, - 2DIAGNOSTIC, 63, -6.103257187416e-01, 1.451169308319e-04, 3.4735e-01, 1.8752e-03, - 2DIAGNOSTIC, 64, -6.113959830165e-01, 1.174662656699e-04, 3.4921e-01, 1.8570e-03, - 2DIAGNOSTIC, 65, -6.119522751808e-01, 9.351882869485e-05, 3.5111e-01, 1.9002e-03, - 2DIAGNOSTIC, 66, -6.122524650311e-01, 7.983599138320e-05, 3.5278e-01, 1.6742e-03, - 2DIAGNOSTIC, 67, -6.124936726478e-01, 6.671951518959e-05, 3.5468e-01, 1.8930e-03, - 2DIAGNOSTIC, 68, -6.135000178322e-01, 6.871478828025e-05, 3.5654e-01, 1.8661e-03, - 2DIAGNOSTIC, 69, -6.130754959082e-01, 6.599135630212e-05, 3.5881e-01, 2.2690e-03, - 2DIAGNOSTIC, 70, -6.145934855070e-01, 7.125921952093e-05, 3.6102e-01, 2.2130e-03, - 2DIAGNOSTIC, 71, -6.150981764855e-01, 7.462133958187e-05, 3.6353e-01, 2.5070e-03, - 2DIAGNOSTIC, 72, -6.168832938582e-01, 8.456671807188e-05, 3.6606e-01, 2.5251e-03, - 2DIAGNOSTIC, 73, -6.167858257136e-01, 8.609655058918e-05, 3.6887e-01, 2.8100e-03, - 2DIAGNOSTIC, 74, -6.184113480966e-01, 9.751599771438e-05, 3.7127e-01, 2.4018e-03, - 2DIAGNOSTIC, 75, -6.183827509906e-01, 1.025096423510e-04, 3.7390e-01, 2.6350e-03, - 2DIAGNOSTIC, 76, -6.182187468699e-01, 9.838206438073e-05, 3.7540e-01, 1.4989e-03, - 2DIAGNOSTIC, 77, -6.179651995224e-01, 8.478122048630e-05, 3.7700e-01, 1.5969e-03, - 2DIAGNOSTIC, 78, -6.194255184809e-01, 7.922345432213e-05, 3.7874e-01, 1.7400e-03, - 2DIAGNOSTIC, 79, -6.199432966128e-01, 6.627983393038e-05, 3.8017e-01, 1.4329e-03, - 2DIAGNOSTIC, 80, -6.217575838720e-01, 6.783305638567e-05, 3.8188e-01, 1.7099e-03, - 2DIAGNOSTIC, 81, -6.251607490796e-01, 8.630052090736e-05, 3.8443e-01, 2.5470e-03, - 2DIAGNOSTIC, 82, -6.254878497121e-01, 1.083757162709e-04, 3.8586e-01, 1.4269e-03, - 2DIAGNOSTIC, 83, -6.248166682383e-01, 1.148257587424e-04, 3.8734e-01, 1.4889e-03, - 2DIAGNOSTIC, 84, -6.245928263488e-01, 1.185529987506e-04, 3.8897e-01, 1.6251e-03, - 2DIAGNOSTIC, 85, -6.250066823250e-01, 1.129022262770e-04, 3.9062e-01, 1.6530e-03, - 2DIAGNOSTIC, 86, -6.249943415176e-01, 9.519482593419e-05, 3.9231e-01, 1.6859e-03, - 2DIAGNOSTIC, 87, -6.276124237382e-01, 8.194420941210e-05, 3.9377e-01, 1.4620e-03, - 2DIAGNOSTIC, 88, -6.428557516412e-01, 1.538810284610e-04, 3.9527e-01, 1.5001e-03, - 2DIAGNOSTIC, 89, -6.590287811853e-01, 2.984001056014e-04, 4.0073e-01, 5.4569e-03, - 2DIAGNOSTIC, 90, -6.590279025938e-01, 4.184452409862e-04, 4.0224e-01, 1.5109e-03, - 2DIAGNOSTIC, 91, -6.590289004734e-01, 5.155224146638e-04, 4.0367e-01, 1.4291e-03, - 2DIAGNOSTIC, 92, -6.590305886095e-01, 5.631662914421e-04, 4.0502e-01, 1.3480e-03, - 2DIAGNOSTIC, 93, -6.590334433215e-01, 5.501373911441e-04, 4.0638e-01, 1.3599e-03, - 2DIAGNOSTIC, 94, -6.590382709011e-01, 4.816164479316e-04, 4.0781e-01, 1.4369e-03, - 2DIAGNOSTIC, 95, -6.590464345673e-01, 3.714654851741e-04, 4.0917e-01, 1.3540e-03, - 2DIAGNOSTIC, 96, -6.590602409374e-01, 2.298928378532e-04, 4.1065e-01, 1.4830e-03, - 2DIAGNOSTIC, 97, -6.590835969487e-01, 8.133091375041e-05, 4.1213e-01, 1.4830e-03, - 2DIAGNOSTIC, 98, -6.591231071490e-01, 1.214587311997e-06, 4.1366e-01, 1.5249e-03, - 2DIAGNOSTIC, 99, -6.591901023342e-01, 1.796102141577e-06, 4.1505e-01, 1.3969e-03, - 2DIAGNOSTIC, 100, -6.593040739912e-01, 2.763526198992e-06, 4.1644e-01, 1.3859e-03, - 2DIAGNOSTIC, 101, -6.595005283240e-01, 4.405611304424e-06, 4.1820e-01, 1.7641e-03, - 2DIAGNOSTIC, 102, -6.598433922090e-01, 7.223063281913e-06, 4.1996e-01, 1.7540e-03, - 2DIAGNOSTIC, 103, -6.604801337248e-01, 1.226034265061e-05, 4.2167e-01, 1.7102e-03, - 2DIAGNOSTIC, 104, -6.623349616562e-01, 2.453941834714e-05, 4.2337e-01, 1.7030e-03, - 2DIAGNOSTIC, 105, -6.658782002347e-01, 5.019410908171e-05, 4.2511e-01, 1.7381e-03, - 2DIAGNOSTIC, 106, -6.732774217530e-01, 1.035425914501e-04, 4.2673e-01, 1.6191e-03, - 2DIAGNOSTIC, 107, -6.776577301732e-01, 1.647429313135e-04, 4.2823e-01, 1.4989e-03, - 2DIAGNOSTIC, 108, -6.821003111359e-01, 2.285186889282e-04, 4.3001e-01, 1.7829e-03, - 2DIAGNOSTIC, 109, -6.885952161578e-01, 2.974954057567e-04, 4.3228e-01, 2.2681e-03, - 2DIAGNOSTIC, 110, -6.932489799249e-01, 3.561941117885e-04, 4.3409e-01, 1.8070e-03, - 2DIAGNOSTIC, 111, -7.017596237115e-01, 4.159056624828e-04, 4.3566e-01, 1.5700e-03, - 2DIAGNOSTIC, 112, -7.045509170561e-01, 4.467927808095e-04, 4.3735e-01, 1.6940e-03, - 2DIAGNOSTIC, 113, -7.068118049877e-01, 4.463169567171e-04, 4.3884e-01, 1.4920e-03, - 2DIAGNOSTIC, 114, -7.084341527633e-01, 4.171571725409e-04, 4.4035e-01, 1.5099e-03, - 2DIAGNOSTIC, 115, -7.125269655679e-01, 3.787046261476e-04, 4.4224e-01, 1.8849e-03, - 2DIAGNOSTIC, 116, -7.216882747745e-01, 3.707144000560e-04, 4.4365e-01, 1.4088e-03, - 2DIAGNOSTIC, 117, -7.253514113075e-01, 3.583032852903e-04, 4.4543e-01, 1.7891e-03, - 2DIAGNOSTIC, 118, -7.283066892266e-01, 3.409659846328e-04, 4.4739e-01, 1.9600e-03, - 2DIAGNOSTIC, 119, -7.292458739440e-01, 3.205123582086e-04, 4.4882e-01, 1.4281e-03, - 2DIAGNOSTIC, 120, -7.378934975887e-01, 3.203763556953e-04, 4.5031e-01, 1.4889e-03, - 2DIAGNOSTIC, 121, -7.610075117910e-01, 4.094739557300e-04, 4.5263e-01, 2.3150e-03, - 2DIAGNOSTIC, 122, -7.646170447397e-01, 4.791335030678e-04, 4.5404e-01, 1.4179e-03, - 2DIAGNOSTIC, 123, -7.664453732928e-01, 5.179562686151e-04, 4.5545e-01, 1.4021e-03, - 2DIAGNOSTIC, 124, -7.680825296768e-01, 5.193922053895e-04, 4.5704e-01, 1.5910e-03, - 2DIAGNOSTIC, 125, -7.696528434576e-01, 4.900936810140e-04, 4.5872e-01, 1.6851e-03, - 2DIAGNOSTIC, 126, -7.712089349587e-01, 4.514089644501e-04, 4.6033e-01, 1.6072e-03, - 2DIAGNOSTIC, 127, -7.730233438447e-01, 3.893383870580e-04, 4.6194e-01, 1.6122e-03, - 2DIAGNOSTIC, 128, -7.726893906661e-01, 3.016361987994e-04, 4.6340e-01, 1.4570e-03, - 2DIAGNOSTIC, 129, -7.726785805431e-01, 1.901187298411e-04, 4.6484e-01, 1.4431e-03, - 2DIAGNOSTIC, 130, -7.775035464593e-01, 1.076718135324e-04, 4.6653e-01, 1.6859e-03, - 2DIAGNOSTIC, 131, -7.789899687662e-01, 1.013799085728e-04, 4.6838e-01, 1.8542e-03, - 2DIAGNOSTIC, 132, -7.802137853766e-01, 1.020196007641e-04, 4.7006e-01, 1.6799e-03, - 2DIAGNOSTIC, 133, -7.850520826083e-01, 1.157989810525e-04, 4.7170e-01, 1.6391e-03, - 2DIAGNOSTIC, 134, -7.894263462252e-01, 1.381193211772e-04, 4.7450e-01, 2.8000e-03, - 2DIAGNOSTIC, 135, -7.894541237591e-01, 1.514911697980e-04, 4.7594e-01, 1.4431e-03, - 2DIAGNOSTIC, 136, -7.898473889167e-01, 1.565379414032e-04, 4.7738e-01, 1.4341e-03, - 2DIAGNOSTIC, 137, -7.901836656513e-01, 1.537826240935e-04, 4.7883e-01, 1.4501e-03, - 2DIAGNOSTIC, 138, -7.897307341618e-01, 1.335502718620e-04, 4.8022e-01, 1.3950e-03, - 2DIAGNOSTIC, 139, -7.899546662832e-01, 1.009063079075e-04, 4.8179e-01, 1.5640e-03, - 2DIAGNOSTIC, 140, -7.903350374353e-01, 7.587722962263e-05, 4.8331e-01, 1.5240e-03, - 2DIAGNOSTIC, 141, -7.902476893306e-01, 4.863770509386e-05, 4.8481e-01, 1.4958e-03, - 2DIAGNOSTIC, 142, -7.923802334133e-01, 2.751432399796e-05, 4.8634e-01, 1.5299e-03, - 2DIAGNOSTIC, 143, -7.943919432586e-01, 2.499568818825e-05, 4.8863e-01, 2.2900e-03, - 2DIAGNOSTIC, 144, -7.951144803983e-01, 3.582805472729e-05, 4.9037e-01, 1.7438e-03, - 2DIAGNOSTIC, 145, -7.953816763395e-01, 4.398387067844e-05, 4.9190e-01, 1.5268e-03, - 2DIAGNOSTIC, 146, -7.956240784232e-01, 4.974089282059e-05, 4.9327e-01, 1.3700e-03, - 2DIAGNOSTIC, 147, -7.964159728051e-01, 5.396832329983e-05, 4.9490e-01, 1.6279e-03, - 2DIAGNOSTIC, 148, -8.029643770512e-01, 7.097070038053e-05, 4.9667e-01, 1.7769e-03, - 2DIAGNOSTIC, 149, -8.108161456805e-01, 1.042847408909e-04, 4.9871e-01, 2.0370e-03, - 2DIAGNOSTIC, 150, -8.095476197814e-01, 1.241026529623e-04, 5.0129e-01, 2.5802e-03, - 2DIAGNOSTIC, 151, -8.093581140930e-01, 1.313672947692e-04, 5.0686e-01, 5.5678e-03, - 2DIAGNOSTIC, 152, -8.093581112506e-01, 1.320676967596e-04, 5.0828e-01, 1.4210e-03, - 2DIAGNOSTIC, 153, -8.093581196335e-01, 1.252303650734e-04, 5.0966e-01, 1.3840e-03, - 2DIAGNOSTIC, 154, -8.093581338087e-01, 1.080177975219e-04, 5.1096e-01, 1.3001e-03, - 2DIAGNOSTIC, 155, -8.093581577787e-01, 8.166948490924e-05, 5.1236e-01, 1.3952e-03, - 2DIAGNOSTIC, 156, -8.093581983108e-01, 4.906017328007e-05, 5.1377e-01, 1.4122e-03, - 2DIAGNOSTIC, 157, -8.093582668481e-01, 1.411851585580e-05, 5.1518e-01, 1.4112e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.729888121911e-01, 1.797693134862e+308, 7.6024e-01, 2.4506e-01, - 2DIAGNOSTIC, 2, -6.719295229659e-01, 1.797693134862e+308, 7.6239e-01, 2.1451e-03, - 2DIAGNOSTIC, 3, -6.729640135496e-01, 1.797693134862e+308, 7.6447e-01, 2.0800e-03, - 2DIAGNOSTIC, 4, -6.738157388303e-01, 1.797693134862e+308, 7.6635e-01, 1.8849e-03, - 2DIAGNOSTIC, 5, -6.746000856826e-01, 1.797693134862e+308, 7.6823e-01, 1.8749e-03, - 2DIAGNOSTIC, 6, -6.753320464140e-01, 1.797693134862e+308, 7.7046e-01, 2.2302e-03, - 2DIAGNOSTIC, 7, -6.762928089314e-01, 1.797693134862e+308, 7.7274e-01, 2.2781e-03, - 2DIAGNOSTIC, 8, -6.763400834239e-01, 1.797693134862e+308, 7.7469e-01, 1.9529e-03, - 2DIAGNOSTIC, 9, -6.767778576633e-01, 1.797693134862e+308, 7.7692e-01, 2.2321e-03, - 2DIAGNOSTIC, 10, -6.766497543710e-01, 4.894154947284e-04, 7.7944e-01, 2.5201e-03, - 2DIAGNOSTIC, 11, -6.768212069646e-01, 4.301918712369e-04, 7.8217e-01, 2.7339e-03, - 2DIAGNOSTIC, 12, -6.769931804021e-01, 3.105455289591e-04, 7.8509e-01, 2.9149e-03, - 2DIAGNOSTIC, 13, -6.780744185750e-01, 2.495714899778e-04, 7.8803e-01, 2.9411e-03, - 2DIAGNOSTIC, 14, -6.779304865117e-01, 1.952392765620e-04, 7.9057e-01, 2.5370e-03, - 2DIAGNOSTIC, 15, -6.780409236528e-01, 1.559656442053e-04, 7.9362e-01, 3.0560e-03, - 2DIAGNOSTIC, 16, -6.779130171354e-01, 1.231234095256e-04, 7.9631e-01, 2.6901e-03, - 2DIAGNOSTIC, 17, -6.779775437363e-01, 1.082863318703e-04, 7.9848e-01, 2.1701e-03, - 2DIAGNOSTIC, 18, -6.782418682696e-01, 9.181951283495e-05, 8.0092e-01, 2.4350e-03, - 2DIAGNOSTIC, 19, -6.787949027227e-01, 9.060909025033e-05, 8.0340e-01, 2.4819e-03, - 2DIAGNOSTIC, 20, -6.794881351941e-01, 9.317591097276e-05, 8.0643e-01, 3.0291e-03, - 2DIAGNOSTIC, 21, -6.797837830850e-01, 9.627753501606e-05, 8.0889e-01, 2.4562e-03, - 2DIAGNOSTIC, 22, -6.796676167341e-01, 9.086538172211e-05, 8.1104e-01, 2.1529e-03, - 2DIAGNOSTIC, 23, -6.793761057355e-01, 9.225147176760e-05, 8.1320e-01, 2.1620e-03, - 2DIAGNOSTIC, 24, -6.792418946456e-01, 8.005588261223e-05, 8.1566e-01, 2.4550e-03, - 2DIAGNOSTIC, 25, -6.794290935572e-01, 6.631551345030e-05, 8.1943e-01, 3.7749e-03, - 2DIAGNOSTIC, 26, -6.795966657841e-01, 4.802172442700e-05, 8.2283e-01, 3.4029e-03, - 2DIAGNOSTIC, 27, -6.794488248575e-01, 2.550443340486e-05, 8.2563e-01, 2.8000e-03, - 2DIAGNOSTIC, 28, -6.793050694628e-01, 4.300854251474e-06, 8.2793e-01, 2.2938e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.536104426996e-01, 1.797693134862e+308, 1.1059e+00, 2.7795e-01, - 2DIAGNOSTIC, 2, -5.550702698227e-01, 1.797693134862e+308, 1.1191e+00, 1.3214e-02, - 2DIAGNOSTIC, 3, -5.562619899685e-01, 1.797693134862e+308, 1.1317e+00, 1.2604e-02, - 2DIAGNOSTIC, 4, -5.571092634571e-01, 1.797693134862e+308, 1.1442e+00, 1.2465e-02, - 2DIAGNOSTIC, 5, -5.582284095431e-01, 1.797693134862e+308, 1.1587e+00, 1.4513e-02, - 2DIAGNOSTIC, 6, -5.585870401601e-01, 1.797693134862e+308, 1.1730e+00, 1.4334e-02, - 2DIAGNOSTIC, 7, -5.586244052156e-01, 1.797693134862e+308, 1.1853e+00, 1.2297e-02, - 2DIAGNOSTIC, 8, -5.587217116553e-01, 1.797693134862e+308, 1.1996e+00, 1.4297e-02, - 2DIAGNOSTIC, 9, -5.589695006748e-01, 1.797693134862e+308, 1.2141e+00, 1.4543e-02, - 2DIAGNOSTIC, 10, -5.590387598946e-01, 5.807706079859e-04, 1.2268e+00, 1.2611e-02, - 2DIAGNOSTIC, 11, -5.590539845309e-01, 3.713900974986e-04, 1.2397e+00, 1.2928e-02, - 2DIAGNOSTIC, 12, -5.593740942895e-01, 2.393833133673e-04, 1.2596e+00, 1.9874e-02, - 2DIAGNOSTIC, 13, -5.594659596901e-01, 1.560657968894e-04, 1.2755e+00, 1.5933e-02, - 2DIAGNOSTIC, 14, -5.594444717967e-01, 9.966879938997e-05, 1.2895e+00, 1.3995e-02, - 2DIAGNOSTIC, 15, -5.594209973448e-01, 7.900285330933e-05, 1.3036e+00, 1.4082e-02, - 2DIAGNOSTIC, 16, -5.593824294134e-01, 6.420147308743e-05, 1.3158e+00, 1.2255e-02, - 2DIAGNOSTIC, 17, -5.593598811422e-01, 4.574271310349e-05, 1.3279e+00, 1.2061e-02, - 2DIAGNOSTIC, 18, -5.594118583401e-01, 2.925702321055e-05, 1.3400e+00, 1.2090e-02, - 2DIAGNOSTIC, 19, -5.594226142115e-01, 1.892022162165e-05, 1.3522e+00, 1.2203e-02, - 2DIAGNOSTIC, 20, -5.594406430842e-01, 1.037803084209e-05, 1.3645e+00, 1.2294e-02, - 2DIAGNOSTIC, 21, -5.595260690067e-01, 4.098650080796e-06, 1.3784e+00, 1.3953e-02, - 2DIAGNOSTIC, 22, -5.595485094147e-01, 5.958047920168e-06, 1.3923e+00, 1.3929e-02, - 2DIAGNOSTIC, 23, -5.595788710034e-01, 9.927707201984e-06, 1.4050e+00, 1.2630e-02, - 2DIAGNOSTIC, 24, -5.596235204766e-01, 1.326026086172e-05, 1.4251e+00, 2.0101e-02, - 2DIAGNOSTIC, 25, -5.596191097529e-01, 1.464743380017e-05, 1.4393e+00, 1.4227e-02, - 2DIAGNOSTIC, 26, -5.596589401675e-01, 1.471452999249e-05, 1.4534e+00, 1.4119e-02, - 2DIAGNOSTIC, 27, -5.597492929686e-01, 1.473927946966e-05, 1.4675e+00, 1.4063e-02, - 2DIAGNOSTIC, 28, -5.597993163800e-01, 1.530653330469e-05, 1.4798e+00, 1.2275e-02, - 2DIAGNOSTIC, 29, -5.598435971279e-01, 1.546764816986e-05, 1.4957e+00, 1.5942e-02, - 2DIAGNOSTIC, 30, -5.598949314156e-01, 1.541629554627e-05, 1.5092e+00, 1.3525e-02, - 2DIAGNOSTIC, 31, -5.599630350310e-01, 1.651722116455e-05, 1.5237e+00, 1.4473e-02, - 2DIAGNOSTIC, 32, -5.599611777119e-01, 1.636298885484e-05, 1.5379e+00, 1.4243e-02, - 2DIAGNOSTIC, 33, -5.599968190218e-01, 1.577259074770e-05, 1.5631e+00, 2.5105e-02, - 2DIAGNOSTIC, 34, -5.599821827618e-01, 1.427544792246e-05, 1.5751e+00, 1.2073e-02, - 2DIAGNOSTIC, 35, -5.599855524559e-01, 1.158578545629e-05, 1.5871e+00, 1.1941e-02, - 2DIAGNOSTIC, 36, -5.599747717177e-01, 8.408546784026e-06, 1.5991e+00, 1.2075e-02, - 2DIAGNOSTIC, 37, -5.599780874608e-01, 5.970080239413e-06, 1.6116e+00, 1.2450e-02, - 2DIAGNOSTIC, 38, -5.599941982010e-01, 4.055005053405e-06, 1.6244e+00, 1.2837e-02, - 2DIAGNOSTIC, 39, -5.599805328499e-01, 2.315461822139e-06, 1.6381e+00, 1.3627e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.809838804367e-01, 1.797693134862e+308, 2.0641e+00, 4.2600e-01, - 2DIAGNOSTIC, 2, -4.812128022878e-01, 1.797693134862e+308, 2.1496e+00, 8.5581e-02, - 2DIAGNOSTIC, 3, -4.814578672602e-01, 1.797693134862e+308, 2.2306e+00, 8.0924e-02, - 2DIAGNOSTIC, 4, -4.816881718934e-01, 1.797693134862e+308, 2.3083e+00, 7.7709e-02, - 2DIAGNOSTIC, 5, -4.820229188054e-01, 1.797693134862e+308, 2.3940e+00, 8.5694e-02, - 2DIAGNOSTIC, 6, -4.824029691486e-01, 1.797693134862e+308, 2.4905e+00, 9.6506e-02, - 2DIAGNOSTIC, 7, -4.828636432085e-01, 1.797693134862e+308, 2.5648e+00, 7.4324e-02, - 2DIAGNOSTIC, 8, -4.831679271749e-01, 1.797693134862e+308, 2.6403e+00, 7.5534e-02, - 2DIAGNOSTIC, 9, -4.833539137504e-01, 1.797693134862e+308, 2.7489e+00, 1.0854e-01, - 2DIAGNOSTIC, 10, -4.834409630315e-01, 3.650170113724e-04, 2.8459e+00, 9.6989e-02, - 2DIAGNOSTIC, 11, -4.834758930504e-01, 3.122606395217e-04, 2.9409e+00, 9.5087e-02, - 2DIAGNOSTIC, 12, -4.836055186287e-01, 2.578799760130e-04, 3.0494e+00, 1.0850e-01, - 2DIAGNOSTIC, 13, -4.836011301333e-01, 1.994845933968e-04, 3.1327e+00, 8.3255e-02, - 2DIAGNOSTIC, 14, -4.839842047390e-01, 1.573513238921e-04, 3.2170e+00, 8.4323e-02, - 2DIAGNOSTIC, 15, -4.841856227395e-01, 1.272810458556e-04, 3.3102e+00, 9.3226e-02, - 2DIAGNOSTIC, 16, -4.842383660484e-01, 1.050899391945e-04, 3.3959e+00, 8.5640e-02, - 2DIAGNOSTIC, 17, -4.842654091161e-01, 9.290329710269e-05, 3.4812e+00, 8.5333e-02, - 2DIAGNOSTIC, 18, -4.842966416516e-01, 8.455454174976e-05, 3.6019e+00, 1.2066e-01, - 2DIAGNOSTIC, 19, -4.843100440602e-01, 7.537776039583e-05, 3.6756e+00, 7.3679e-02, - 2DIAGNOSTIC, 20, -4.843644180797e-01, 6.431150379854e-05, 3.7741e+00, 9.8576e-02, - 2DIAGNOSTIC, 21, -4.843810217310e-01, 4.989876731382e-05, 3.8610e+00, 8.6889e-02, - 2DIAGNOSTIC, 22, -4.843786607142e-01, 3.588937131923e-05, 4.0153e+00, 1.5428e-01, - 2DIAGNOSTIC, 23, -4.843808059701e-01, 1.963687318738e-05, 4.0887e+00, 7.3418e-02, - 2DIAGNOSTIC, 24, -4.843772483305e-01, 1.220498642776e-05, 4.1655e+00, 7.6768e-02, - 2DIAGNOSTIC, 25, -4.843728261518e-01, 8.942492002298e-06, 4.2772e+00, 1.1170e-01, - 2DIAGNOSTIC, 26, -4.843749811408e-01, 6.439539933338e-06, 4.3740e+00, 9.6812e-02, - 2DIAGNOSTIC, 27, -4.843711323859e-01, 4.135185227613e-06, 4.4642e+00, 9.0236e-02, - 2DIAGNOSTIC, 28, -4.843692979324e-01, 2.346644737243e-06, 4.5623e+00, 9.8075e-02, - Elapsed time (stage 0): 4.7107e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.825551977576e-01, 1.797693134862e+308, 2.1098e-01, 2.1098e-01, - 2DIAGNOSTIC, 2, -7.840166652706e-01, 1.797693134862e+308, 2.1248e-01, 1.5008e-03, - 2DIAGNOSTIC, 3, -7.873732704792e-01, 1.797693134862e+308, 2.1399e-01, 1.5080e-03, - 2DIAGNOSTIC, 4, -7.918848838551e-01, 1.797693134862e+308, 2.1530e-01, 1.3049e-03, - 2DIAGNOSTIC, 5, -7.999317426089e-01, 1.797693134862e+308, 2.1651e-01, 1.2121e-03, - 2DIAGNOSTIC, 6, -8.109542803828e-01, 1.797693134862e+308, 2.1780e-01, 1.2860e-03, - 2DIAGNOSTIC, 7, -8.245926485459e-01, 1.797693134862e+308, 2.1919e-01, 1.3912e-03, - 2DIAGNOSTIC, 8, -8.398496358287e-01, 1.797693134862e+308, 2.2123e-01, 2.0421e-03, - 2DIAGNOSTIC, 9, -8.397858560734e-01, 1.797693134862e+308, 2.2258e-01, 1.3490e-03, - 2DIAGNOSTIC, 10, -8.429562182155e-01, 5.721739862160e-03, 2.2443e-01, 1.8480e-03, - 2DIAGNOSTIC, 11, -8.457843732917e-01, 5.237814331244e-03, 2.2592e-01, 1.4911e-03, - 2DIAGNOSTIC, 12, -8.458475710069e-01, 4.405613942370e-03, 2.2765e-01, 1.7321e-03, - 2DIAGNOSTIC, 13, -8.478941662375e-01, 3.450862291948e-03, 2.2923e-01, 1.5838e-03, - 2DIAGNOSTIC, 14, -8.616577974573e-01, 2.774354540162e-03, 2.3130e-01, 2.0661e-03, - 2DIAGNOSTIC, 15, -8.670494691031e-01, 2.240037418479e-03, 2.3320e-01, 1.9050e-03, - 2DIAGNOSTIC, 16, -8.685755536216e-01, 1.835531039033e-03, 2.3591e-01, 2.7020e-03, - 2DIAGNOSTIC, 17, -8.691909800030e-01, 1.596348063204e-03, 2.3760e-01, 1.6961e-03, - 2DIAGNOSTIC, 18, -8.700124036269e-01, 1.544674377429e-03, 2.3956e-01, 1.9550e-03, - 2DIAGNOSTIC, 19, -8.695087165022e-01, 1.340405440492e-03, 2.4177e-01, 2.2161e-03, - 2DIAGNOSTIC, 20, -8.692728388624e-01, 1.080413493731e-03, 2.4387e-01, 2.0959e-03, - 2DIAGNOSTIC, 21, -8.697186240344e-01, 8.021452381274e-04, 2.4539e-01, 1.5171e-03, - 2DIAGNOSTIC, 22, -8.697765344453e-01, 4.796884363126e-04, 2.4669e-01, 1.2999e-03, - 2DIAGNOSTIC, 23, -8.704328117030e-01, 1.766279607386e-04, 2.4845e-01, 1.7622e-03, - 2DIAGNOSTIC, 24, -8.717087995424e-01, 9.305752132788e-05, 2.4987e-01, 1.4200e-03, - 2DIAGNOSTIC, 25, -8.728050817364e-01, 9.467938914513e-05, 2.5209e-01, 2.2240e-03, - 2DIAGNOSTIC, 26, -8.738684402572e-01, 1.205673125033e-04, 2.5402e-01, 1.9281e-03, - 2DIAGNOSTIC, 27, -8.742685663262e-01, 1.454587025690e-04, 2.5562e-01, 1.6029e-03, - 2DIAGNOSTIC, 28, -8.737096094362e-01, 1.583410278311e-04, 2.5697e-01, 1.3449e-03, - 2DIAGNOSTIC, 29, -8.732381955423e-01, 1.444706793195e-04, 2.5827e-01, 1.2991e-03, - 2DIAGNOSTIC, 30, -8.729049649138e-01, 1.114848621930e-04, 2.5966e-01, 1.3928e-03, - 2DIAGNOSTIC, 31, -8.721032968353e-01, 6.638722370984e-05, 2.6110e-01, 1.4441e-03, - 2DIAGNOSTIC, 32, -8.723273300252e-01, 2.112296144979e-05, 2.6284e-01, 1.7350e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.615624862366e-01, 1.797693134862e+308, 4.7781e-01, 2.1497e-01, - 2DIAGNOSTIC, 2, -7.609661957618e-01, 1.797693134862e+308, 4.8062e-01, 2.8169e-03, - 2DIAGNOSTIC, 3, -7.627347668865e-01, 1.797693134862e+308, 4.8334e-01, 2.7120e-03, - 2DIAGNOSTIC, 4, -7.642057301323e-01, 1.797693134862e+308, 4.8593e-01, 2.5959e-03, - 2DIAGNOSTIC, 5, -7.669163550022e-01, 1.797693134862e+308, 4.8800e-01, 2.0630e-03, - 2DIAGNOSTIC, 6, -7.704378150871e-01, 1.797693134862e+308, 4.9007e-01, 2.0781e-03, - 2DIAGNOSTIC, 7, -7.756653139204e-01, 1.797693134862e+308, 4.9244e-01, 2.3670e-03, - 2DIAGNOSTIC, 8, -7.806394700885e-01, 1.797693134862e+308, 4.9602e-01, 3.5839e-03, - 2DIAGNOSTIC, 9, -7.806759255255e-01, 1.797693134862e+308, 4.9923e-01, 3.2089e-03, - 2DIAGNOSTIC, 10, -7.805924860302e-01, 2.022935910234e-03, 5.0151e-01, 2.2728e-03, - 2DIAGNOSTIC, 11, -7.810282245220e-01, 1.828211780692e-03, 5.0433e-01, 2.8288e-03, - 2DIAGNOSTIC, 12, -7.809437539840e-01, 1.478218895399e-03, 5.0684e-01, 2.5029e-03, - 2DIAGNOSTIC, 13, -7.810432445024e-01, 1.100954435763e-03, 5.0904e-01, 2.2030e-03, - 2DIAGNOSTIC, 14, -7.810193923859e-01, 7.172965984440e-04, 5.1125e-01, 2.2049e-03, - 2DIAGNOSTIC, 15, -7.812315982303e-01, 3.926328099747e-04, 5.1357e-01, 2.3248e-03, - 2DIAGNOSTIC, 16, -7.814974147206e-01, 1.576736356072e-04, 5.1590e-01, 2.3291e-03, - 2DIAGNOSTIC, 17, -7.817792851853e-01, 5.190983209086e-05, 5.1819e-01, 2.2912e-03, - 2DIAGNOSTIC, 18, -7.820734044584e-01, 6.072151685512e-05, 5.2090e-01, 2.7080e-03, - 2DIAGNOSTIC, 19, -7.822283208259e-01, 6.692142056053e-05, 5.2322e-01, 2.3170e-03, - 2DIAGNOSTIC, 20, -7.821099467963e-01, 6.250968470065e-05, 5.2550e-01, 2.2862e-03, - 2DIAGNOSTIC, 21, -7.824398549732e-01, 6.631762649412e-05, 5.2805e-01, 2.5501e-03, - 2DIAGNOSTIC, 22, -7.822657854006e-01, 5.918167642206e-05, 5.3031e-01, 2.2600e-03, - 2DIAGNOSTIC, 23, -7.821743322172e-01, 4.752680768851e-05, 5.3255e-01, 2.2409e-03, - 2DIAGNOSTIC, 24, -7.823286127065e-01, 3.457983131339e-05, 5.3504e-01, 2.4879e-03, - 2DIAGNOSTIC, 25, -7.825811338639e-01, 2.624008436290e-05, 5.3844e-01, 3.3989e-03, - 2DIAGNOSTIC, 26, -7.825190504080e-01, 1.887647473829e-05, 5.4096e-01, 2.5239e-03, - 2DIAGNOSTIC, 27, -7.823801643229e-01, 1.234755458009e-05, 5.4409e-01, 3.1290e-03, - 2DIAGNOSTIC, 28, -7.819258922036e-01, 3.255922531448e-06, 5.4744e-01, 3.3481e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.614640332588e-01, 1.797693134862e+308, 7.8004e-01, 2.3259e-01, - 2DIAGNOSTIC, 2, -6.626254653158e-01, 1.797693134862e+308, 7.9320e-01, 1.3160e-02, - 2DIAGNOSTIC, 3, -6.635037863970e-01, 1.797693134862e+308, 8.0664e-01, 1.3443e-02, - 2DIAGNOSTIC, 4, -6.641005005973e-01, 1.797693134862e+308, 8.2008e-01, 1.3441e-02, - 2DIAGNOSTIC, 5, -6.646702150522e-01, 1.797693134862e+308, 8.3382e-01, 1.3737e-02, - 2DIAGNOSTIC, 6, -6.656340997083e-01, 1.797693134862e+308, 8.5097e-01, 1.7151e-02, - 2DIAGNOSTIC, 7, -6.660764244992e-01, 1.797693134862e+308, 8.6812e-01, 1.7155e-02, - 2DIAGNOSTIC, 8, -6.662091019615e-01, 1.797693134862e+308, 8.8343e-01, 1.5311e-02, - 2DIAGNOSTIC, 9, -6.664803376542e-01, 1.797693134862e+308, 8.9777e-01, 1.4338e-02, - 2DIAGNOSTIC, 10, -6.680214311143e-01, 5.548676043189e-04, 9.1366e-01, 1.5888e-02, - 2DIAGNOSTIC, 11, -6.699186600869e-01, 5.349893801281e-04, 9.2943e-01, 1.5774e-02, - 2DIAGNOSTIC, 12, -6.704007795023e-01, 5.273692049278e-04, 9.4523e-01, 1.5793e-02, - 2DIAGNOSTIC, 13, -6.708700496267e-01, 5.189182694970e-04, 9.6116e-01, 1.5936e-02, - 2DIAGNOSTIC, 14, -6.710778000282e-01, 4.897441750967e-04, 9.7913e-01, 1.7964e-02, - 2DIAGNOSTIC, 15, -6.713953486592e-01, 4.438722174732e-04, 9.9522e-01, 1.6092e-02, - 2DIAGNOSTIC, 16, -6.713203325014e-01, 3.857472304624e-04, 1.0109e+00, 1.5673e-02, - 2DIAGNOSTIC, 17, -6.713400937907e-01, 3.111852288710e-04, 1.0236e+00, 1.2671e-02, - 2DIAGNOSTIC, 18, -6.713810949126e-01, 2.213238453099e-04, 1.0360e+00, 1.2461e-02, - 2DIAGNOSTIC, 19, -6.715628499396e-01, 1.302842981814e-04, 1.0494e+00, 1.3404e-02, - 2DIAGNOSTIC, 20, -6.718195911739e-01, 7.360713035642e-05, 1.0634e+00, 1.3935e-02, - 2DIAGNOSTIC, 21, -6.723274176721e-01, 6.417463616860e-05, 1.0772e+00, 1.3814e-02, - 2DIAGNOSTIC, 22, -6.740089384251e-01, 9.128459451300e-05, 1.0978e+00, 2.0590e-02, - 2DIAGNOSTIC, 23, -6.741869428208e-01, 1.187893154671e-04, 1.1176e+00, 1.9788e-02, - 2DIAGNOSTIC, 24, -6.742225671954e-01, 1.374603975979e-04, 1.1330e+00, 1.5443e-02, - 2DIAGNOSTIC, 25, -6.742528091117e-01, 1.481754268184e-04, 1.1465e+00, 1.3454e-02, - 2DIAGNOSTIC, 26, -6.744063094982e-01, 1.453571640442e-04, 1.1598e+00, 1.3313e-02, - 2DIAGNOSTIC, 27, -6.745968385290e-01, 1.320233639792e-04, 1.1851e+00, 2.5316e-02, - 2DIAGNOSTIC, 28, -6.746168487633e-01, 1.081390144702e-04, 1.1984e+00, 1.3357e-02, - 2DIAGNOSTIC, 29, -6.746380229373e-01, 7.920449179646e-05, 1.2121e+00, 1.3659e-02, - 2DIAGNOSTIC, 30, -6.746748743714e-01, 4.912328648280e-05, 1.2256e+00, 1.3460e-02, - 2DIAGNOSTIC, 31, -6.746744411010e-01, 2.271299055909e-05, 1.2394e+00, 1.3867e-02, - 2DIAGNOSTIC, 32, -6.746851854387e-01, 1.823517141552e-05, 1.2548e+00, 1.5355e-02, - 2DIAGNOSTIC, 33, -6.746775790559e-01, 1.459768830012e-05, 1.2705e+00, 1.5712e-02, - 2DIAGNOSTIC, 34, -6.746670964630e-01, 1.024344006047e-05, 1.2870e+00, 1.6535e-02, - 2DIAGNOSTIC, 35, -6.747820233974e-01, 6.987808395635e-06, 1.3080e+00, 2.0943e-02, - 2DIAGNOSTIC, 36, -6.748245120017e-01, 5.542044475504e-06, 1.3269e+00, 1.8938e-02, - 2DIAGNOSTIC, 37, -6.748333209474e-01, 6.015713588287e-06, 1.3419e+00, 1.4990e-02, - 2DIAGNOSTIC, 38, -6.748677883726e-01, 6.604254478682e-06, 1.3582e+00, 1.6291e-02, - 2DIAGNOSTIC, 39, -6.748801864073e-01, 6.963717896616e-06, 1.3749e+00, 1.6754e-02, - 2DIAGNOSTIC, 40, -6.748524478277e-01, 6.796320798284e-06, 1.3888e+00, 1.3823e-02, - 2DIAGNOSTIC, 41, -6.748644747513e-01, 6.182077139798e-06, 1.4023e+00, 1.3574e-02, - 2DIAGNOSTIC, 42, -6.748810590227e-01, 5.367497562091e-06, 1.4179e+00, 1.5587e-02, - 2DIAGNOSTIC, 43, -6.748924789290e-01, 4.197721619456e-06, 1.4325e+00, 1.4531e-02, - 2DIAGNOSTIC, 44, -6.749082745542e-01, 2.775335152670e-06, 1.4461e+00, 1.3674e-02, - 2DIAGNOSTIC, 45, -6.749629324403e-01, 2.813150401983e-06, 1.4598e+00, 1.3680e-02, - 2DIAGNOSTIC, 46, -6.750350248523e-01, 3.692966764685e-06, 1.4732e+00, 1.3419e-02, - 2DIAGNOSTIC, 47, -6.751363213991e-01, 5.213966598052e-06, 1.4869e+00, 1.3694e-02, - 2DIAGNOSTIC, 48, -6.751942530025e-01, 7.034203393857e-06, 1.4995e+00, 1.2586e-02, - 2DIAGNOSTIC, 49, -6.754127410917e-01, 1.017491923541e-05, 1.5138e+00, 1.4334e-02, - 2DIAGNOSTIC, 50, -6.754369622950e-01, 1.220364439819e-05, 1.5429e+00, 2.9033e-02, - 2DIAGNOSTIC, 51, -6.754573964500e-01, 1.332097778159e-05, 1.5589e+00, 1.6011e-02, - 2DIAGNOSTIC, 52, -6.754651885577e-01, 1.339049506770e-05, 1.5730e+00, 1.4145e-02, - 2DIAGNOSTIC, 53, -6.754155903045e-01, 1.192383137076e-05, 1.5862e+00, 1.3185e-02, - 2DIAGNOSTIC, 54, -6.754216871755e-01, 9.587046121067e-06, 1.6015e+00, 1.5296e-02, - 2DIAGNOSTIC, 55, -6.754267219633e-01, 6.916386914385e-06, 1.6152e+00, 1.3702e-02, - 2DIAGNOSTIC, 56, -6.753976396096e-01, 4.057722910684e-06, 1.6296e+00, 1.4380e-02, - 2DIAGNOSTIC, 57, -6.754052814792e-01, 1.789857587205e-06, 1.6434e+00, 1.3827e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.652544593110e-01, 1.797693134862e+308, 2.0773e+00, 4.3384e-01, - 2DIAGNOSTIC, 2, -5.658974835372e-01, 1.797693134862e+308, 2.1756e+00, 9.8379e-02, - 2DIAGNOSTIC, 3, -5.664852281079e-01, 1.797693134862e+308, 2.2751e+00, 9.9487e-02, - 2DIAGNOSTIC, 4, -5.672202533807e-01, 1.797693134862e+308, 2.3729e+00, 9.7742e-02, - 2DIAGNOSTIC, 5, -5.683261875014e-01, 1.797693134862e+308, 2.4639e+00, 9.1040e-02, - 2DIAGNOSTIC, 6, -5.693999367278e-01, 1.797693134862e+308, 2.5858e+00, 1.2188e-01, - 2DIAGNOSTIC, 7, -5.695814536267e-01, 1.797693134862e+308, 2.6703e+00, 8.4472e-02, - 2DIAGNOSTIC, 8, -5.699140358999e-01, 1.797693134862e+308, 2.7538e+00, 8.3510e-02, - 2DIAGNOSTIC, 9, -5.726889725323e-01, 1.797693134862e+308, 2.8672e+00, 1.1344e-01, - 2DIAGNOSTIC, 10, -5.728273369823e-01, 8.623111014566e-04, 3.0032e+00, 1.3597e-01, - 2DIAGNOSTIC, 11, -5.728545340618e-01, 7.795945529466e-04, 3.1145e+00, 1.1128e-01, - 2DIAGNOSTIC, 12, -5.728738428061e-01, 6.706781674039e-04, 3.2213e+00, 1.0684e-01, - 2DIAGNOSTIC, 13, -5.728687059289e-01, 5.404916022681e-04, 3.3151e+00, 9.3754e-02, - 2DIAGNOSTIC, 14, -5.728789869577e-01, 4.044328663500e-04, 3.4563e+00, 1.4124e-01, - 2DIAGNOSTIC, 15, -5.728809565805e-01, 2.855213233930e-04, 3.5947e+00, 1.3837e-01, - 2DIAGNOSTIC, 16, -5.728808720221e-01, 1.903419836150e-04, 3.7040e+00, 1.0933e-01, - 2DIAGNOSTIC, 17, -5.728774030759e-01, 9.505219140037e-05, 3.8174e+00, 1.1338e-01, - 2DIAGNOSTIC, 18, -5.728766351681e-01, 8.828315010576e-06, 3.9291e+00, 1.1170e-01, - 2DIAGNOSTIC, 19, -5.728776526523e-01, 3.728240635950e-06, 4.0395e+00, 1.1039e-01, - 2DIAGNOSTIC, 20, -5.728764062949e-01, 2.343484762003e-06, 4.1659e+00, 1.2643e-01, - 2DIAGNOSTIC, 21, -5.728738115470e-01, 1.595063415905e-06, 4.2776e+00, 1.1167e-01, - 2DIAGNOSTIC, 22, -5.728692322500e-01, 1.251118091822e-06, 4.3917e+00, 1.1410e-01, - Elapsed time (stage 1): 4.5210e+00 - - -Total elapsed time: 9.2355e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:13:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:13:58 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55fd15d844f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fd15d89fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f19dbf33010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55fd15d85850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fd15d82f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f19d8874010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55fd15d9cb80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fd15d89550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f19d51b5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55fd15da1d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fd15d9fc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f19d1af6010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55fd15da3f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fd15da23a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f19ce437010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55fd15da4540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fd15da44d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f19cad78010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.217254579176e-01, 1.797693134862e+308, 2.1645e-01, 2.1645e-01, - 2DIAGNOSTIC, 2, -6.245972379976e-01, 1.797693134862e+308, 2.1843e-01, 1.9729e-03, - 2DIAGNOSTIC, 3, -6.280639678807e-01, 1.797693134862e+308, 2.2037e-01, 1.9391e-03, - 2DIAGNOSTIC, 4, -6.328101175661e-01, 1.797693134862e+308, 2.2227e-01, 1.9090e-03, - 2DIAGNOSTIC, 5, -6.394060244557e-01, 1.797693134862e+308, 2.2419e-01, 1.9150e-03, - 2DIAGNOSTIC, 6, -6.437507121716e-01, 1.797693134862e+308, 2.2603e-01, 1.8401e-03, - 2DIAGNOSTIC, 7, -6.453042402921e-01, 1.797693134862e+308, 2.2787e-01, 1.8392e-03, - 2DIAGNOSTIC, 8, -6.461292444063e-01, 1.797693134862e+308, 2.3024e-01, 2.3711e-03, - 2DIAGNOSTIC, 9, -6.469038447470e-01, 1.797693134862e+308, 2.3261e-01, 2.3701e-03, - 2DIAGNOSTIC, 10, -6.470627698276e-01, 2.858731236433e-03, 2.3468e-01, 2.0740e-03, - 2DIAGNOSTIC, 11, -6.488089891895e-01, 2.191770500906e-03, 2.3749e-01, 2.8069e-03, - 2DIAGNOSTIC, 12, -6.490388397340e-01, 1.555851642131e-03, 2.3949e-01, 1.9970e-03, - 2DIAGNOSTIC, 13, -6.494115273284e-01, 1.010403537802e-03, 2.4176e-01, 2.2731e-03, - 2DIAGNOSTIC, 14, -6.496323392802e-01, 6.063672418282e-04, 2.4377e-01, 2.0130e-03, - 2DIAGNOSTIC, 15, -6.495984763522e-01, 3.925790918513e-04, 2.4574e-01, 1.9650e-03, - 2DIAGNOSTIC, 16, -6.498556334169e-01, 2.961815607939e-04, 2.4773e-01, 1.9882e-03, - 2DIAGNOSTIC, 17, -6.510284411981e-01, 2.543872151680e-04, 2.5131e-01, 3.5791e-03, - 2DIAGNOSTIC, 18, -6.512164942080e-01, 2.181024930236e-04, 2.5458e-01, 3.2730e-03, - 2DIAGNOSTIC, 19, -6.510835313225e-01, 1.812252527683e-04, 2.5726e-01, 2.6779e-03, - 2DIAGNOSTIC, 20, -6.510853062841e-01, 1.345699190274e-04, 2.5934e-01, 2.0850e-03, - 2DIAGNOSTIC, 21, -6.510875516992e-01, 1.166405878201e-04, 2.6162e-01, 2.2821e-03, - 2DIAGNOSTIC, 22, -6.510899393943e-01, 9.362434623184e-05, 2.6394e-01, 2.3141e-03, - 2DIAGNOSTIC, 23, -6.510926749422e-01, 7.102007875779e-05, 2.6627e-01, 2.3360e-03, - 2DIAGNOSTIC, 24, -6.511062323697e-01, 4.854984038890e-05, 2.7338e-01, 7.1070e-03, - 2DIAGNOSTIC, 25, -6.511062322215e-01, 2.304101999503e-05, 2.8028e-01, 6.9008e-03, - 2DIAGNOSTIC, 26, -6.511062322215e-01, 1.255282266133e-06, 2.8380e-01, 3.5219e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.357318455455e-01, 1.797693134862e+308, 5.1507e-01, 2.3127e-01, - 2DIAGNOSTIC, 2, -5.365359978640e-01, 1.797693134862e+308, 5.2849e-01, 1.3415e-02, - 2DIAGNOSTIC, 3, -5.373144650838e-01, 1.797693134862e+308, 5.4188e-01, 1.3395e-02, - 2DIAGNOSTIC, 4, -5.383286596762e-01, 1.797693134862e+308, 5.5514e-01, 1.3256e-02, - 2DIAGNOSTIC, 5, -5.388356683729e-01, 1.797693134862e+308, 5.6850e-01, 1.3365e-02, - 2DIAGNOSTIC, 6, -5.391317067100e-01, 1.797693134862e+308, 5.8176e-01, 1.3256e-02, - 2DIAGNOSTIC, 7, -5.403796071266e-01, 1.797693134862e+308, 6.0296e-01, 2.1198e-02, - 2DIAGNOSTIC, 8, -5.404885771698e-01, 1.797693134862e+308, 6.1924e-01, 1.6278e-02, - 2DIAGNOSTIC, 9, -5.405894881262e-01, 1.797693134862e+308, 6.3305e-01, 1.3814e-02, - 2DIAGNOSTIC, 10, -5.406565365874e-01, 6.203853835770e-04, 6.4914e-01, 1.6088e-02, - 2DIAGNOSTIC, 11, -5.407067924838e-01, 4.657676690339e-04, 6.6319e-01, 1.4056e-02, - 2DIAGNOSTIC, 12, -5.407791619438e-01, 3.329800767647e-04, 6.8164e-01, 1.8446e-02, - 2DIAGNOSTIC, 13, -5.407832773240e-01, 2.215577531223e-04, 6.9766e-01, 1.6018e-02, - 2DIAGNOSTIC, 14, -5.407650060237e-01, 1.440069422349e-04, 7.2375e-01, 2.6092e-02, - 2DIAGNOSTIC, 15, -5.407676976792e-01, 8.208150269641e-05, 7.3959e-01, 1.5844e-02, - 2DIAGNOSTIC, 16, -5.407681699394e-01, 2.921186923545e-05, 7.5357e-01, 1.3979e-02, - 2DIAGNOSTIC, 17, -5.407558373082e-01, 1.827275831929e-05, 7.6731e-01, 1.3741e-02, - 2DIAGNOSTIC, 18, -5.407571035507e-01, 1.022889806934e-05, 7.8143e-01, 1.4117e-02, - 2DIAGNOSTIC, 19, -5.407590093444e-01, 5.098347922124e-06, 7.9488e-01, 1.3446e-02, - 2DIAGNOSTIC, 20, -5.407615589524e-01, 1.977233931180e-06, 8.0869e-01, 1.3811e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.545991486892e-01, 1.797693134862e+308, 1.1787e+00, 3.6998e-01, - 2DIAGNOSTIC, 2, -4.552108219728e-01, 1.797693134862e+308, 1.2716e+00, 9.2957e-02, - 2DIAGNOSTIC, 3, -4.555050642319e-01, 1.797693134862e+308, 1.3630e+00, 9.1343e-02, - 2DIAGNOSTIC, 4, -4.556066421695e-01, 1.797693134862e+308, 1.4540e+00, 9.1019e-02, - 2DIAGNOSTIC, 5, -4.556715193069e-01, 1.797693134862e+308, 1.5468e+00, 9.2849e-02, - 2DIAGNOSTIC, 6, -4.557054631192e-01, 1.797693134862e+308, 1.6404e+00, 9.3611e-02, - 2DIAGNOSTIC, 7, -4.558935810633e-01, 1.797693134862e+308, 1.8619e+00, 2.2149e-01, - 2DIAGNOSTIC, 8, -4.559015166460e-01, 1.797693134862e+308, 1.9942e+00, 1.3228e-01, - 2DIAGNOSTIC, 9, -4.559028589863e-01, 1.797693134862e+308, 2.1264e+00, 1.3217e-01, - 2DIAGNOSTIC, 10, -4.559004160973e-01, 1.481428019810e-04, 2.2232e+00, 9.6775e-02, - 2DIAGNOSTIC, 11, -4.559022336310e-01, 8.133335548090e-05, 2.3090e+00, 8.5822e-02, - 2DIAGNOSTIC, 12, -4.559003666340e-01, 4.983384462327e-05, 2.4170e+00, 1.0802e-01, - 2DIAGNOSTIC, 13, -4.558990461260e-01, 3.286269536917e-05, 2.5099e+00, 9.2858e-02, - 2DIAGNOSTIC, 14, -4.558999190585e-01, 2.019112594584e-05, 2.6157e+00, 1.0581e-01, - 2DIAGNOSTIC, 15, -4.559016313013e-01, 1.040032245753e-05, 2.7251e+00, 1.0945e-01, - 2DIAGNOSTIC, 16, -4.559016379147e-01, 2.189487789558e-06, 2.8225e+00, 9.7408e-02, - 2DIAGNOSTIC, 17, -4.559008503596e-01, 1.792026995580e-06, 2.9070e+00, 8.4471e-02, - 2DIAGNOSTIC, 18, -4.558999718040e-01, 1.691953789795e-06, 3.0121e+00, 1.0512e-01, - 2DIAGNOSTIC, 19, -4.559026202507e-01, 1.742442688475e-06, 3.1213e+00, 1.0914e-01, - 2DIAGNOSTIC, 20, -4.559011950019e-01, 1.653892624812e-06, 3.2437e+00, 1.2239e-01, - 2DIAGNOSTIC, 21, -4.559008596494e-01, 1.615104232369e-06, 3.3373e+00, 9.3658e-02, - 2DIAGNOSTIC, 22, -4.558998603708e-01, 1.492917898818e-06, 3.4435e+00, 1.0618e-01, - 2DIAGNOSTIC, 23, -4.559017969530e-01, 1.393834583155e-06, 3.5648e+00, 1.2127e-01, - 2DIAGNOSTIC, 24, -4.559013283985e-01, 1.308108312538e-06, 3.6717e+00, 1.0692e-01, - 2DIAGNOSTIC, 25, -4.559006327428e-01, 1.256553258874e-06, 3.7664e+00, 9.4673e-02, - 2DIAGNOSTIC, 26, -4.558990406314e-01, 1.175241018725e-06, 3.8612e+00, 9.4807e-02, - 2DIAGNOSTIC, 27, -4.558981738830e-01, 1.068034148219e-06, 3.9547e+00, 9.3544e-02, - 2DIAGNOSTIC, 28, -4.559011569960e-01, 1.022837452423e-06, 4.0619e+00, 1.0718e-01, - 2DIAGNOSTIC, 29, -4.559023493434e-01, 1.071955388440e-06, 4.1668e+00, 1.0495e-01, - 2DIAGNOSTIC, 30, -4.559005163683e-01, 1.053216112760e-06, 4.2715e+00, 1.0470e-01, - 2DIAGNOSTIC, 31, -4.558994721316e-01, 1.012505930903e-06, 4.3900e+00, 1.1847e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.921931002128e-01, 1.797693134862e+308, 5.7559e+00, 1.3659e+00, - 2DIAGNOSTIC, 2, -3.923614293227e-01, 1.797693134862e+308, 6.3642e+00, 6.0830e-01, - 2DIAGNOSTIC, 3, -3.923612916860e-01, 1.797693134862e+308, 7.4072e+00, 1.0430e+00, - 2DIAGNOSTIC, 4, -3.923615135484e-01, 1.797693134862e+308, 8.0628e+00, 6.5556e-01, - 2DIAGNOSTIC, 5, -3.923611467265e-01, 1.797693134862e+308, 8.9385e+00, 8.7575e-01, - 2DIAGNOSTIC, 6, -3.923612296630e-01, 1.797693134862e+308, 9.5455e+00, 6.0700e-01, - 2DIAGNOSTIC, 7, -3.923610657735e-01, 1.797693134862e+308, 1.0107e+01, 5.6187e-01, - 2DIAGNOSTIC, 8, -3.923610278802e-01, 1.797693134862e+308, 1.0788e+01, 6.8028e-01, - 2DIAGNOSTIC, 9, -3.923605206260e-01, 1.797693134862e+308, 1.1415e+01, 6.2697e-01, - 2DIAGNOSTIC, 10, -3.923602798436e-01, 1.520640294632e-05, 1.1939e+01, 5.2437e-01, - 2DIAGNOSTIC, 11, -3.923600667986e-01, 2.692633454607e-06, 1.2458e+01, 5.1905e-01, - 2DIAGNOSTIC, 12, -3.923603226930e-01, 2.459034713007e-06, 1.3001e+01, 5.4253e-01, - 2DIAGNOSTIC, 13, -3.923603754326e-01, 2.272851229820e-06, 1.3621e+01, 6.1999e-01, - 2DIAGNOSTIC, 14, -3.923602170405e-01, 2.133224208611e-06, 1.4253e+01, 6.3205e-01, - 2DIAGNOSTIC, 15, -3.923601082036e-01, 2.002469989409e-06, 1.4861e+01, 6.0831e-01, - 2DIAGNOSTIC, 16, -3.923601709254e-01, 1.905569422783e-06, 1.5641e+01, 7.8013e-01, - 2DIAGNOSTIC, 17, -3.923599313661e-01, 1.809700753405e-06, 1.6251e+01, 6.1012e-01, - 2DIAGNOSTIC, 18, -3.923598212671e-01, 1.724724755320e-06, 1.6821e+01, 5.7027e-01, - 2DIAGNOSTIC, 19, -3.923597002490e-01, 1.629165784965e-06, 1.7330e+01, 5.0876e-01, - 2DIAGNOSTIC, 20, -3.923595928568e-01, 1.535120808381e-06, 1.7868e+01, 5.3810e-01, - 2DIAGNOSTIC, 21, -3.923594917422e-01, 1.444039850251e-06, 1.8414e+01, 5.4541e-01, - 2DIAGNOSTIC, 22, -3.923595209112e-01, 1.377186021674e-06, 1.9085e+01, 6.7144e-01, - 2DIAGNOSTIC, 23, -3.923593901192e-01, 1.320234948220e-06, 1.9690e+01, 6.0445e-01, - 2DIAGNOSTIC, 24, -3.923592558211e-01, 1.265244612463e-06, 2.0298e+01, 6.0807e-01, - 2DIAGNOSTIC, 25, -3.923591227328e-01, 1.213264156912e-06, 2.0770e+01, 4.7280e-01, - 2DIAGNOSTIC, 26, -3.923589949922e-01, 1.169191025885e-06, 2.1248e+01, 4.7760e-01, - 2DIAGNOSTIC, 27, -3.923591574738e-01, 1.131432753806e-06, 2.1766e+01, 5.1807e-01, - 2DIAGNOSTIC, 28, -3.923593349013e-01, 1.102385421121e-06, 2.2304e+01, 5.3797e-01, - 2DIAGNOSTIC, 29, -3.923593971110e-01, 1.077064748292e-06, 2.2844e+01, 5.4031e-01, - 2DIAGNOSTIC, 30, -3.923595014222e-01, 1.055411470330e-06, 2.3443e+01, 5.9885e-01, - 2DIAGNOSTIC, 31, -3.923595068599e-01, 1.033341942347e-06, 2.4066e+01, 6.2246e-01, - 2DIAGNOSTIC, 32, -3.923590897166e-01, 1.003167957488e-06, 2.4614e+01, 5.4815e-01, - Elapsed time (stage 0): 2.4970e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.302121046753e-01, 1.797693134862e+308, 1.8527e-01, 1.8527e-01, - 2DIAGNOSTIC, 2, -6.314918523578e-01, 1.797693134862e+308, 1.8725e-01, 1.9791e-03, - 2DIAGNOSTIC, 3, -6.327222834348e-01, 1.797693134862e+308, 1.8917e-01, 1.9181e-03, - 2DIAGNOSTIC, 4, -6.337326471098e-01, 1.797693134862e+308, 1.9107e-01, 1.9040e-03, - 2DIAGNOSTIC, 5, -6.346214317736e-01, 1.797693134862e+308, 1.9307e-01, 1.9960e-03, - 2DIAGNOSTIC, 6, -6.355611582067e-01, 1.797693134862e+308, 1.9499e-01, 1.9190e-03, - 2DIAGNOSTIC, 7, -6.367998694808e-01, 1.797693134862e+308, 1.9689e-01, 1.9031e-03, - 2DIAGNOSTIC, 8, -6.374867055529e-01, 1.797693134862e+308, 1.9899e-01, 2.1009e-03, - 2DIAGNOSTIC, 9, -6.378145253526e-01, 1.797693134862e+308, 2.0165e-01, 2.6579e-03, - 2DIAGNOSTIC, 10, -6.379547956163e-01, 8.179098526670e-04, 2.0376e-01, 2.1079e-03, - 2DIAGNOSTIC, 11, -6.380447919531e-01, 6.347552341380e-04, 2.0638e-01, 2.6181e-03, - 2DIAGNOSTIC, 12, -6.384567595957e-01, 4.874939095456e-04, 2.0905e-01, 2.6779e-03, - 2DIAGNOSTIC, 13, -6.385148757753e-01, 3.625532256664e-04, 2.1120e-01, 2.1441e-03, - 2DIAGNOSTIC, 14, -6.386660433235e-01, 2.599882864476e-04, 2.1364e-01, 2.4450e-03, - 2DIAGNOSTIC, 15, -6.387359602737e-01, 1.761428172335e-04, 2.1585e-01, 2.2068e-03, - 2DIAGNOSTIC, 16, -6.386476143002e-01, 1.099473087314e-04, 2.1843e-01, 2.5830e-03, - 2DIAGNOSTIC, 17, -6.387875427641e-01, 7.745216171685e-05, 2.2158e-01, 3.1509e-03, - 2DIAGNOSTIC, 18, -6.387882978040e-01, 5.832810200832e-05, 2.2408e-01, 2.4991e-03, - 2DIAGNOSTIC, 19, -6.387912897891e-01, 4.378000848795e-05, 2.2641e-01, 2.3232e-03, - 2DIAGNOSTIC, 20, -6.387931141538e-01, 3.004325513253e-05, 2.2889e-01, 2.4810e-03, - 2DIAGNOSTIC, 21, -6.387959186733e-01, 1.677226788625e-05, 2.3122e-01, 2.3332e-03, - 2DIAGNOSTIC, 22, -6.386669250361e-01, 9.012041614201e-06, 2.3421e-01, 2.9931e-03, - 2DIAGNOSTIC, 23, -6.386697672473e-01, 2.369904039873e-06, 2.3770e-01, 3.4902e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.403695324877e-01, 1.797693134862e+308, 4.4616e-01, 2.0846e-01, - 2DIAGNOSTIC, 2, -5.409820919140e-01, 1.797693134862e+308, 4.5965e-01, 1.3490e-02, - 2DIAGNOSTIC, 3, -5.415831702268e-01, 1.797693134862e+308, 4.7328e-01, 1.3630e-02, - 2DIAGNOSTIC, 4, -5.420680241387e-01, 1.797693134862e+308, 4.8715e-01, 1.3870e-02, - 2DIAGNOSTIC, 5, -5.422846612981e-01, 1.797693134862e+308, 5.0112e-01, 1.3970e-02, - 2DIAGNOSTIC, 6, -5.425076901806e-01, 1.797693134862e+308, 5.1773e-01, 1.6606e-02, - 2DIAGNOSTIC, 7, -5.430092667009e-01, 1.797693134862e+308, 5.3890e-01, 2.1175e-02, - 2DIAGNOSTIC, 8, -5.432163638400e-01, 1.797693134862e+308, 5.5307e-01, 1.4168e-02, - 2DIAGNOSTIC, 9, -5.434018073465e-01, 1.797693134862e+308, 5.6693e-01, 1.3861e-02, - 2DIAGNOSTIC, 10, -5.436233962150e-01, 3.695475121259e-04, 5.8295e-01, 1.6017e-02, - 2DIAGNOSTIC, 11, -5.436957782421e-01, 2.863214094436e-04, 6.0073e-01, 1.7788e-02, - 2DIAGNOSTIC, 12, -5.437242836189e-01, 2.189474902021e-04, 6.2550e-01, 2.4763e-02, - 2DIAGNOSTIC, 13, -5.437693018626e-01, 1.680581249659e-04, 6.3941e-01, 1.3915e-02, - 2DIAGNOSTIC, 14, -5.439429389614e-01, 1.340470944097e-04, 6.5449e-01, 1.5076e-02, - 2DIAGNOSTIC, 15, -5.441366626567e-01, 1.066768462950e-04, 6.6828e-01, 1.3789e-02, - 2DIAGNOSTIC, 16, -5.442676172005e-01, 8.428044311302e-05, 6.8210e-01, 1.3824e-02, - 2DIAGNOSTIC, 17, -5.443457461770e-01, 7.481112525308e-05, 6.9632e-01, 1.4219e-02, - 2DIAGNOSTIC, 18, -5.443753905088e-01, 6.652822038677e-05, 7.1066e-01, 1.4337e-02, - 2DIAGNOSTIC, 19, -5.444060860449e-01, 5.888924723976e-05, 7.2447e-01, 1.3808e-02, - 2DIAGNOSTIC, 20, -5.444461942343e-01, 5.342415534107e-05, 7.4395e-01, 1.9480e-02, - 2DIAGNOSTIC, 21, -5.444611093295e-01, 4.580339377351e-05, 7.5777e-01, 1.3823e-02, - 2DIAGNOSTIC, 22, -5.444674507417e-01, 3.563270328825e-05, 7.7201e-01, 1.4238e-02, - 2DIAGNOSTIC, 23, -5.447446651483e-01, 3.045981261530e-05, 7.8587e-01, 1.3859e-02, - 2DIAGNOSTIC, 24, -5.451121977043e-01, 3.454357635249e-05, 8.0715e-01, 2.1288e-02, - 2DIAGNOSTIC, 25, -5.451936938969e-01, 4.072302367706e-05, 8.2520e-01, 1.8049e-02, - 2DIAGNOSTIC, 26, -5.451849426631e-01, 4.527011291908e-05, 8.4127e-01, 1.6065e-02, - 2DIAGNOSTIC, 27, -5.451752045517e-01, 4.677541021273e-05, 8.5735e-01, 1.6078e-02, - 2DIAGNOSTIC, 28, -5.451507054790e-01, 4.388055238300e-05, 8.7132e-01, 1.3977e-02, - 2DIAGNOSTIC, 29, -5.451406488332e-01, 3.737792558865e-05, 8.8558e-01, 1.4255e-02, - 2DIAGNOSTIC, 30, -5.451455352587e-01, 2.868605881490e-05, 8.9924e-01, 1.3664e-02, - 2DIAGNOSTIC, 31, -5.451551796655e-01, 1.849687614493e-05, 9.1621e-01, 1.6972e-02, - 2DIAGNOSTIC, 32, -5.451626628842e-01, 7.479362990108e-06, 9.3178e-01, 1.5566e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.559966933059e-01, 1.797693134862e+308, 1.3055e+00, 3.7369e-01, - 2DIAGNOSTIC, 2, -4.568475586984e-01, 1.797693134862e+308, 1.4060e+00, 1.0056e-01, - 2DIAGNOSTIC, 3, -4.574298865883e-01, 1.797693134862e+308, 1.5071e+00, 1.0104e-01, - 2DIAGNOSTIC, 4, -4.576705774836e-01, 1.797693134862e+308, 1.6212e+00, 1.1411e-01, - 2DIAGNOSTIC, 5, -4.577185471512e-01, 1.797693134862e+308, 1.7496e+00, 1.2844e-01, - 2DIAGNOSTIC, 6, -4.576927578221e-01, 1.797693134862e+308, 1.8783e+00, 1.2864e-01, - 2DIAGNOSTIC, 7, -4.576875005082e-01, 1.797693134862e+308, 1.9926e+00, 1.1430e-01, - 2DIAGNOSTIC, 8, -4.576863694822e-01, 1.797693134862e+308, 2.1600e+00, 1.6741e-01, - 2DIAGNOSTIC, 9, -4.576880414915e-01, 1.797693134862e+308, 2.2887e+00, 1.2877e-01, - 2DIAGNOSTIC, 10, -4.576879004158e-01, 1.653007118857e-04, 2.4039e+00, 1.1513e-01, - 2DIAGNOSTIC, 11, -4.576873338988e-01, 6.285182249197e-05, 2.5174e+00, 1.1358e-01, - 2DIAGNOSTIC, 12, -4.576867660949e-01, 1.547158830735e-05, 2.6168e+00, 9.9368e-02, - 2DIAGNOSTIC, 13, -4.576859253228e-01, 1.694935718985e-06, 2.7020e+00, 8.5150e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.928982109307e-01, 1.797693134862e+308, 3.8875e+00, 1.1856e+00, - 2DIAGNOSTIC, 2, -3.930163156588e-01, 1.797693134862e+308, 4.4939e+00, 6.0636e-01, - 2DIAGNOSTIC, 3, -3.930658011670e-01, 1.797693134862e+308, 5.7621e+00, 1.2681e+00, - 2DIAGNOSTIC, 4, -3.930663024109e-01, 1.797693134862e+308, 6.5234e+00, 7.6133e-01, - 2DIAGNOSTIC, 5, -3.930656874839e-01, 1.797693134862e+308, 7.1739e+00, 6.5049e-01, - 2DIAGNOSTIC, 6, -3.930652611147e-01, 1.797693134862e+308, 7.7701e+00, 5.9626e-01, - 2DIAGNOSTIC, 7, -3.930653996168e-01, 1.797693134862e+308, 8.5897e+00, 8.1953e-01, - 2DIAGNOSTIC, 8, -3.930654559234e-01, 1.797693134862e+308, 9.3581e+00, 7.6841e-01, - 2DIAGNOSTIC, 9, -3.930653935656e-01, 1.797693134862e+308, 9.9998e+00, 6.4177e-01, - 2DIAGNOSTIC, 10, -3.930650647803e-01, 1.829321427367e-05, 1.0690e+01, 6.9006e-01, - 2DIAGNOSTIC, 11, -3.930650067213e-01, 6.002877854641e-06, 1.1295e+01, 6.0495e-01, - 2DIAGNOSTIC, 12, -3.930648641727e-01, 2.504220091792e-06, 1.1987e+01, 6.9175e-01, - 2DIAGNOSTIC, 13, -3.930647468095e-01, 2.301288931639e-06, 1.2665e+01, 6.7863e-01, - 2DIAGNOSTIC, 14, -3.930649103268e-01, 2.175824550157e-06, 1.3249e+01, 5.8370e-01, - 2DIAGNOSTIC, 15, -3.930649042086e-01, 2.046549862342e-06, 1.3938e+01, 6.8918e-01, - 2DIAGNOSTIC, 16, -3.930652330624e-01, 1.935770439776e-06, 1.4686e+01, 7.4753e-01, - 2DIAGNOSTIC, 17, -3.930652230303e-01, 1.847826082257e-06, 1.5414e+01, 7.2869e-01, - 2DIAGNOSTIC, 18, -3.930649932077e-01, 1.764963373153e-06, 1.6106e+01, 6.9162e-01, - 2DIAGNOSTIC, 19, -3.930649268124e-01, 1.686743290201e-06, 1.6702e+01, 5.9637e-01, - 2DIAGNOSTIC, 20, -3.930649116613e-01, 1.602578382665e-06, 1.7310e+01, 6.0783e-01, - 2DIAGNOSTIC, 21, -3.930649926079e-01, 1.525949181680e-06, 1.7880e+01, 5.6942e-01, - 2DIAGNOSTIC, 22, -3.930649878212e-01, 1.450450552033e-06, 1.8549e+01, 6.6988e-01, - 2DIAGNOSTIC, 23, -3.930647268925e-01, 1.369379758663e-06, 1.9187e+01, 6.3792e-01, - 2DIAGNOSTIC, 24, -3.930648697823e-01, 1.306023969451e-06, 1.9853e+01, 6.6520e-01, - 2DIAGNOSTIC, 25, -3.930648209254e-01, 1.247379985775e-06, 2.0400e+01, 5.4747e-01, - 2DIAGNOSTIC, 26, -3.930648351910e-01, 1.204978357650e-06, 2.1102e+01, 7.0175e-01, - 2DIAGNOSTIC, 27, -3.930647561893e-01, 1.165280906788e-06, 2.1834e+01, 7.3261e-01, - 2DIAGNOSTIC, 28, -3.930646400025e-01, 1.120920297783e-06, 2.2507e+01, 6.7276e-01, - 2DIAGNOSTIC, 29, -3.930643934269e-01, 1.073315643967e-06, 2.3117e+01, 6.1001e-01, - 2DIAGNOSTIC, 30, -3.930644535139e-01, 1.032149824942e-06, 2.3656e+01, 5.3925e-01, - 2DIAGNOSTIC, 31, -3.930646965509e-01, 1.003702140498e-06, 2.4258e+01, 6.0149e-01, - Elapsed time (stage 1): 2.4641e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.033180968155e-01, 1.797693134862e+308, 2.5385e-01, 2.5385e-01, - 1DIAGNOSTIC, 2, -9.129998465187e-01, 1.797693134862e+308, 3.5365e-01, 9.9804e-02, - 1DIAGNOSTIC, 3, -9.211053237667e-01, 1.797693134862e+308, 4.5074e-01, 9.7092e-02, - 1DIAGNOSTIC, 4, -9.277130771387e-01, 1.797693134862e+308, 5.4565e-01, 9.4908e-02, - 1DIAGNOSTIC, 5, -9.329710771137e-01, 1.797693134862e+308, 6.4104e-01, 9.5391e-02, - 1DIAGNOSTIC, 6, -9.366805363387e-01, 1.797693134862e+308, 7.3684e-01, 9.5794e-02, - 1DIAGNOSTIC, 7, -9.399766870108e-01, 1.797693134862e+308, 8.3436e-01, 9.7522e-02, - 1DIAGNOSTIC, 8, -9.428583038152e-01, 1.797693134862e+308, 9.2974e-01, 9.5381e-02, - 1DIAGNOSTIC, 9, -9.454510932111e-01, 1.797693134862e+308, 1.0265e+00, 9.6748e-02, - 1DIAGNOSTIC, 10, -9.478331318627e-01, 2.887000986524e-03, 1.1212e+00, 9.4695e-02, - 1DIAGNOSTIC, 11, -9.499782743231e-01, 2.161783975838e-03, 1.2141e+00, 9.2874e-02, - 1DIAGNOSTIC, 12, -9.517641153533e-01, 1.653158249563e-03, 1.3153e+00, 1.0124e-01, - 1DIAGNOSTIC, 13, -9.532758712388e-01, 1.296981474950e-03, 1.4089e+00, 9.3565e-02, - 1DIAGNOSTIC, 14, -9.544666739364e-01, 1.041772728487e-03, 1.5064e+00, 9.7496e-02, - 1DIAGNOSTIC, 15, -9.554887499180e-01, 8.518462688915e-04, 1.6021e+00, 9.5702e-02, - 1DIAGNOSTIC, 16, -9.563395295015e-01, 6.932934469115e-04, 1.6987e+00, 9.6619e-02, - 1DIAGNOSTIC, 17, -9.570156971630e-01, 5.598513290815e-04, 1.7945e+00, 9.5827e-02, - 1DIAGNOSTIC, 18, -9.575583371119e-01, 4.467346750962e-04, 1.8926e+00, 9.8068e-02, - 1DIAGNOSTIC, 19, -9.580248624822e-01, 3.524981962795e-04, 1.9853e+00, 9.2692e-02, - 1DIAGNOSTIC, 20, -9.583022913372e-01, 2.747870709595e-04, 2.0831e+00, 9.7821e-02, - 1DIAGNOSTIC, 21, -9.586467586031e-01, 2.144567882311e-04, 2.1852e+00, 1.0213e-01, - 1DIAGNOSTIC, 22, -9.587641386094e-01, 1.654746482162e-04, 2.2813e+00, 9.6059e-02, - 1DIAGNOSTIC, 23, -9.587121046652e-01, 1.243518811696e-04, 2.3849e+00, 1.0366e-01, - 1DIAGNOSTIC, 24, -9.584751810631e-01, 8.699858694324e-05, 2.4867e+00, 1.0172e-01, - 1DIAGNOSTIC, 25, -9.585891563557e-01, 5.819678779340e-05, 2.5851e+00, 9.8439e-02, - 1DIAGNOSTIC, 26, -9.583874844258e-01, 3.355865429090e-05, 2.6828e+00, 9.7709e-02, - 1DIAGNOSTIC, 27, -9.584799141701e-01, 1.620819894801e-05, 2.7839e+00, 1.0107e-01, - 1DIAGNOSTIC, 28, -9.582854931153e-01, 2.358384126065e-06, 2.8886e+00, 1.0470e-01, - 1DIAGNOSTIC, 29, -9.583824675231e-01, -4.759748407586e-06, 2.9878e+00, 9.9184e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.145640945073e-01, 1.797693134862e+308, 3.8290e+00, 8.4122e-01, - 1DIAGNOSTIC, 2, -9.188203064025e-01, 1.797693134862e+308, 4.5008e+00, 6.7185e-01, - 1DIAGNOSTIC, 3, -9.229573892833e-01, 1.797693134862e+308, 5.1579e+00, 6.5708e-01, - 1DIAGNOSTIC, 4, -9.262611621744e-01, 1.797693134862e+308, 5.8191e+00, 6.6122e-01, - 1DIAGNOSTIC, 5, -9.290828015931e-01, 1.797693134862e+308, 6.4808e+00, 6.6166e-01, - 1DIAGNOSTIC, 6, -9.313426944895e-01, 1.797693134862e+308, 7.1443e+00, 6.6355e-01, - 1DIAGNOSTIC, 7, -9.332079171845e-01, 1.797693134862e+308, 7.8084e+00, 6.6409e-01, - 1DIAGNOSTIC, 8, -9.346949597012e-01, 1.797693134862e+308, 8.4598e+00, 6.5141e-01, - 1DIAGNOSTIC, 9, -9.359696707232e-01, 1.797693134862e+308, 9.0982e+00, 6.3836e-01, - 1DIAGNOSTIC, 10, -9.370956196076e-01, 1.514566734259e-03, 9.7471e+00, 6.4890e-01, - 1DIAGNOSTIC, 11, -9.379951542153e-01, 1.150380703854e-03, 1.0416e+01, 6.6841e-01, - 1DIAGNOSTIC, 12, -9.387960325197e-01, 8.715574954614e-04, 1.1087e+01, 6.7101e-01, - 1DIAGNOSTIC, 13, -9.395123292096e-01, 6.702880098357e-04, 1.1746e+01, 6.5985e-01, - 1DIAGNOSTIC, 14, -9.401496566790e-01, 5.221709124723e-04, 1.2417e+01, 6.7066e-01, - 1DIAGNOSTIC, 15, -9.407315949470e-01, 4.148659539042e-04, 1.3079e+01, 6.6220e-01, - 1DIAGNOSTIC, 16, -9.412488953000e-01, 3.354919002381e-04, 1.3742e+01, 6.6304e-01, - 1DIAGNOSTIC, 17, -9.417360986431e-01, 2.765250719778e-04, 1.4415e+01, 6.7238e-01, - 1DIAGNOSTIC, 18, -9.421658966177e-01, 2.308122781287e-04, 1.5101e+01, 6.8608e-01, - 1DIAGNOSTIC, 19, -9.425600075169e-01, 1.951055156858e-04, 1.5780e+01, 6.7901e-01, - 1DIAGNOSTIC, 20, -9.429170449193e-01, 1.673257691065e-04, 1.6477e+01, 6.9732e-01, - 1DIAGNOSTIC, 21, -9.432436035695e-01, 1.443082561876e-04, 1.7144e+01, 6.6704e-01, - 1DIAGNOSTIC, 22, -9.435329706679e-01, 1.249404364556e-04, 1.7809e+01, 6.6536e-01, - 1DIAGNOSTIC, 23, -9.437937642029e-01, 1.084660528619e-04, 1.8473e+01, 6.6339e-01, - 1DIAGNOSTIC, 24, -9.440444937423e-01, 9.443966537731e-05, 1.9131e+01, 6.5779e-01, - 1DIAGNOSTIC, 25, -9.442704564869e-01, 8.249072419877e-05, 1.9792e+01, 6.6140e-01, - 1DIAGNOSTIC, 26, -9.444790481792e-01, 7.219221637464e-05, 2.0457e+01, 6.6514e-01, - 1DIAGNOSTIC, 27, -9.446685034302e-01, 6.349188373909e-05, 2.1119e+01, 6.6231e-01, - 1DIAGNOSTIC, 28, -9.448461411787e-01, 5.604126348643e-05, 2.1780e+01, 6.6100e-01, - 1DIAGNOSTIC, 29, -9.450093075998e-01, 4.967658226460e-05, 2.2430e+01, 6.4996e-01, - 1DIAGNOSTIC, 30, -9.451554450126e-01, 4.416402406968e-05, 2.3067e+01, 6.3651e-01, - 1DIAGNOSTIC, 31, -9.452941528241e-01, 3.942498360832e-05, 2.3698e+01, 6.3072e-01, - 1DIAGNOSTIC, 32, -9.454223441026e-01, 3.525258160354e-05, 2.4357e+01, 6.5963e-01, - 1DIAGNOSTIC, 33, -9.455460637514e-01, 3.156938986267e-05, 2.4997e+01, 6.3968e-01, - 1DIAGNOSTIC, 34, -9.456562185667e-01, 2.837278949455e-05, 2.5640e+01, 6.4250e-01, - 1DIAGNOSTIC, 35, -9.457612129348e-01, 2.558206568515e-05, 2.6301e+01, 6.6176e-01, - 1DIAGNOSTIC, 36, -9.458650789107e-01, 2.319799094992e-05, 2.6958e+01, 6.5686e-01, - 1DIAGNOSTIC, 37, -9.459587935643e-01, 2.110548464738e-05, 2.7624e+01, 6.6542e-01, - 1DIAGNOSTIC, 38, -9.460447312231e-01, 1.926810020780e-05, 2.8288e+01, 6.6434e-01, - 1DIAGNOSTIC, 39, -9.461287005188e-01, 1.766484643818e-05, 2.8949e+01, 6.6097e-01, - 1DIAGNOSTIC, 40, -9.462062739442e-01, 1.620605502359e-05, 2.9607e+01, 6.5840e-01, - 1DIAGNOSTIC, 41, -9.462783434237e-01, 1.488349010152e-05, 3.0271e+01, 6.6377e-01, - 1DIAGNOSTIC, 42, -9.463491607201e-01, 1.369189987618e-05, 3.0936e+01, 6.6468e-01, - 1DIAGNOSTIC, 43, -9.464119727371e-01, 1.261661486401e-05, 3.1601e+01, 6.6504e-01, - 1DIAGNOSTIC, 44, -9.464735041605e-01, 1.162107225498e-05, 3.2256e+01, 6.5561e-01, - 1DIAGNOSTIC, 45, -9.465305826701e-01, 1.070190300469e-05, 3.2917e+01, 6.6018e-01, - 1DIAGNOSTIC, 46, -9.465840801083e-01, 9.888012138075e-06, 3.3577e+01, 6.6073e-01, - 1DIAGNOSTIC, 47, -9.466307607707e-01, 9.120336505065e-06, 3.4227e+01, 6.4939e-01, - 1DIAGNOSTIC, 48, -9.466714885272e-01, 8.363537367283e-06, 3.4882e+01, 6.5568e-01, - 1DIAGNOSTIC, 49, -9.467152638394e-01, 7.678993193865e-06, 3.5539e+01, 6.5646e-01, - 1DIAGNOSTIC, 50, -9.467567063673e-01, 7.057792597447e-06, 3.6247e+01, 7.0802e-01, - 1DIAGNOSTIC, 51, -9.467963706854e-01, 6.497994081915e-06, 3.6921e+01, 6.7377e-01, - 1DIAGNOSTIC, 52, -9.468299931767e-01, 5.996155779751e-06, 3.7586e+01, 6.6493e-01, - 1DIAGNOSTIC, 53, -9.468630455908e-01, 5.537102672069e-06, 3.8252e+01, 6.6614e-01, - 1DIAGNOSTIC, 54, -9.468885056409e-01, 5.101257362815e-06, 3.8917e+01, 6.6549e-01, - 1DIAGNOSTIC, 55, -9.469198917538e-01, 4.727765154131e-06, 3.9570e+01, 6.5285e-01, - 1DIAGNOSTIC, 56, -9.469490445373e-01, 4.408665415585e-06, 4.0219e+01, 6.4860e-01, - 1DIAGNOSTIC, 57, -9.469811230266e-01, 4.144531609171e-06, 4.0861e+01, 6.4193e-01, - 1DIAGNOSTIC, 58, -9.470071824406e-01, 3.887635704150e-06, 4.1501e+01, 6.4010e-01, - 1DIAGNOSTIC, 59, -9.470309129994e-01, 3.660232463582e-06, 4.2139e+01, 6.3823e-01, - 1DIAGNOSTIC, 60, -9.470537056842e-01, 3.459634176087e-06, 4.2785e+01, 6.4603e-01, - 1DIAGNOSTIC, 61, -9.470732404749e-01, 3.272754388037e-06, 4.3445e+01, 6.6005e-01, - 1DIAGNOSTIC, 62, -9.470930110869e-01, 3.083408748852e-06, 4.4114e+01, 6.6876e-01, - 1DIAGNOSTIC, 63, -9.471114956636e-01, 2.897341932543e-06, 4.4754e+01, 6.4001e-01, - 1DIAGNOSTIC, 64, -9.471307967741e-01, 2.695192867518e-06, 4.5431e+01, 6.7774e-01, - 1DIAGNOSTIC, 65, -9.471495337164e-01, 2.517683666138e-06, 4.6104e+01, 6.7240e-01, - 1DIAGNOSTIC, 66, -9.471661300228e-01, 2.356190236783e-06, 4.6764e+01, 6.5965e-01, - 1DIAGNOSTIC, 67, -9.471814813013e-01, 2.230368246526e-06, 4.7463e+01, 6.9972e-01, - 1DIAGNOSTIC, 68, -9.471968865743e-01, 2.121002795841e-06, 4.8128e+01, 6.6465e-01, - 1DIAGNOSTIC, 69, -9.472111046387e-01, 2.019087981274e-06, 4.8783e+01, 6.5512e-01, - 1DIAGNOSTIC, 70, -9.472238703177e-01, 1.921307557716e-06, 4.9455e+01, 6.7197e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.022132676913e-01, 1.797693134862e+308, 5.5123e+01, 5.6676e+00, - 1DIAGNOSTIC, 2, -9.054661730848e-01, 1.797693134862e+308, 6.0437e+01, 5.3140e+00, - 1DIAGNOSTIC, 3, -9.084249627699e-01, 1.797693134862e+308, 6.5823e+01, 5.3861e+00, - 1DIAGNOSTIC, 4, -9.110396593308e-01, 1.797693134862e+308, 7.1184e+01, 5.3608e+00, - 1DIAGNOSTIC, 5, -9.133699326666e-01, 1.797693134862e+308, 7.6561e+01, 5.3770e+00, - 1DIAGNOSTIC, 6, -9.154375278810e-01, 1.797693134862e+308, 8.1901e+01, 5.3402e+00, - 1DIAGNOSTIC, 7, -9.173027562778e-01, 1.797693134862e+308, 8.7221e+01, 5.3198e+00, - 1DIAGNOSTIC, 8, -9.189511790485e-01, 1.797693134862e+308, 9.2563e+01, 5.3422e+00, - 1DIAGNOSTIC, 9, -9.205697155419e-01, 1.797693134862e+308, 9.7896e+01, 5.3329e+00, - 1DIAGNOSTIC, 10, -9.218977300400e-01, 1.357702726214e-03, 1.0321e+02, 5.3153e+00, - 1DIAGNOSTIC, 11, -9.231549208866e-01, 1.106738874443e-03, 1.0854e+02, 5.3254e+00, - 1DIAGNOSTIC, 12, -9.241318987873e-01, 9.070673626136e-04, 1.1388e+02, 5.3421e+00, - 1DIAGNOSTIC, 13, -9.250968593778e-01, 7.493175550572e-04, 1.1921e+02, 5.3284e+00, - 1DIAGNOSTIC, 14, -9.258303354850e-01, 6.196427387077e-04, 1.2455e+02, 5.3397e+00, - 1DIAGNOSTIC, 15, -9.264866130360e-01, 5.120088821997e-04, 1.2990e+02, 5.3535e+00, - 1DIAGNOSTIC, 16, -9.269662770122e-01, 4.199053837249e-04, 1.3527e+02, 5.3664e+00, - 1DIAGNOSTIC, 17, -9.275402219542e-01, 3.442243025616e-04, 1.4065e+02, 5.3856e+00, - 1DIAGNOSTIC, 18, -9.279564464405e-01, 2.803302746834e-04, 1.4599e+02, 5.3411e+00, - 1DIAGNOSTIC, 19, -9.283572046739e-01, 2.299026364138e-04, 1.5136e+02, 5.3656e+00, - 1DIAGNOSTIC, 20, -9.287367775087e-01, 1.894128500019e-04, 1.5670e+02, 5.3430e+00, - 1DIAGNOSTIC, 21, -9.291028223475e-01, 1.589518454399e-04, 1.6207e+02, 5.3698e+00, - 1DIAGNOSTIC, 22, -9.294523010121e-01, 1.349125315606e-04, 1.6740e+02, 5.3288e+00, - 1DIAGNOSTIC, 23, -9.297906610280e-01, 1.177760695010e-04, 1.7279e+02, 5.3854e+00, - 1DIAGNOSTIC, 24, -9.301158647193e-01, 1.046116294168e-04, 1.7814e+02, 5.3517e+00, - 1DIAGNOSTIC, 25, -9.304288709530e-01, 9.465757134398e-05, 1.8353e+02, 5.3946e+00, - 1DIAGNOSTIC, 26, -9.307323259043e-01, 8.581982762953e-05, 1.8888e+02, 5.3496e+00, - 1DIAGNOSTIC, 27, -9.310269104349e-01, 7.948315012175e-05, 1.9426e+02, 5.3774e+00, - 1DIAGNOSTIC, 28, -9.313100168764e-01, 7.381388148894e-05, 1.9963e+02, 5.3709e+00, - 1DIAGNOSTIC, 29, -9.315734271935e-01, 6.863999942106e-05, 2.0502e+02, 5.3859e+00, - 1DIAGNOSTIC, 30, -9.318221226603e-01, 6.379567566854e-05, 2.1036e+02, 5.3405e+00, - 1DIAGNOSTIC, 31, -9.320562503950e-01, 5.921364345026e-05, 2.1575e+02, 5.3941e+00, - 1DIAGNOSTIC, 32, -9.322824319416e-01, 5.487204329239e-05, 2.2109e+02, 5.3380e+00, - 1DIAGNOSTIC, 33, -9.324977504480e-01, 5.078054916902e-05, 2.2645e+02, 5.3565e+00, - 1DIAGNOSTIC, 34, -9.327034766646e-01, 4.694496090418e-05, 2.3176e+02, 5.3179e+00, - 1DIAGNOSTIC, 35, -9.328932603499e-01, 4.332066652749e-05, 2.3714e+02, 5.3808e+00, - 1DIAGNOSTIC, 36, -9.330678867138e-01, 3.989752846093e-05, 2.4249e+02, 5.3419e+00, - 1DIAGNOSTIC, 37, -9.332236561923e-01, 3.664058909047e-05, 2.4787e+02, 5.3808e+00, - 1DIAGNOSTIC, 38, -9.333681300014e-01, 3.356320182429e-05, 2.5323e+02, 5.3643e+00, - 1DIAGNOSTIC, 39, -9.335006760864e-01, 3.060489719622e-05, 2.5861e+02, 5.3745e+00, - 1DIAGNOSTIC, 40, -9.336233604591e-01, 2.777053686256e-05, 2.6396e+02, 5.3590e+00, - 1DIAGNOSTIC, 41, -9.337368558151e-01, 2.507210682602e-05, 2.6936e+02, 5.3910e+00, - 1DIAGNOSTIC, 42, -9.338405977797e-01, 2.256517271954e-05, 2.7470e+02, 5.3458e+00, - 1DIAGNOSTIC, 43, -9.339369961917e-01, 2.028944527977e-05, 2.8007e+02, 5.3664e+00, - 1DIAGNOSTIC, 44, -9.340255128808e-01, 1.827551545285e-05, 2.8540e+02, 5.3329e+00, - 1DIAGNOSTIC, 45, -9.341104654220e-01, 1.652268915975e-05, 2.9076e+02, 5.3573e+00, - 1DIAGNOSTIC, 46, -9.341884345940e-01, 1.499694938347e-05, 2.9612e+02, 5.3615e+00, - 1DIAGNOSTIC, 47, -9.342606177151e-01, 1.363614413435e-05, 3.0150e+02, 5.3827e+00, - 1DIAGNOSTIC, 48, -9.343310498298e-01, 1.244793581328e-05, 3.0689e+02, 5.3868e+00, - 1DIAGNOSTIC, 49, -9.343966681984e-01, 1.140372363506e-05, 3.1226e+02, 5.3711e+00, - 1DIAGNOSTIC, 50, -9.344571944272e-01, 1.047972626133e-05, 3.1762e+02, 5.3615e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.006317659580e-01, 1.797693134862e+308, 3.6172e+02, 4.4096e+01, - 1DIAGNOSTIC, 2, -9.019438617862e-01, 1.797693134862e+308, 4.0544e+02, 4.3722e+01, - 1DIAGNOSTIC, 3, -9.034262896409e-01, 1.797693134862e+308, 4.4871e+02, 4.3266e+01, - 1DIAGNOSTIC, 4, -9.046674720773e-01, 1.797693134862e+308, 4.9201e+02, 4.3309e+01, - 1DIAGNOSTIC, 5, -9.059290376746e-01, 1.797693134862e+308, 5.3530e+02, 4.3287e+01, - 1DIAGNOSTIC, 6, -9.071399576321e-01, 1.797693134862e+308, 5.7852e+02, 4.3217e+01, - 1DIAGNOSTIC, 7, -9.083220279755e-01, 1.797693134862e+308, 6.2171e+02, 4.3190e+01, - 1DIAGNOSTIC, 8, -9.094648642656e-01, 1.797693134862e+308, 6.6489e+02, 4.3181e+01, - 1DIAGNOSTIC, 9, -9.105383101325e-01, 1.797693134862e+308, 7.0815e+02, 4.3263e+01, - 1DIAGNOSTIC, 10, -9.113999455647e-01, 7.690085574931e-04, 7.5143e+02, 4.3282e+01, - 1DIAGNOSTIC, 11, -9.120344935086e-01, 6.588796228263e-04, 7.9481e+02, 4.3381e+01, - 1DIAGNOSTIC, 12, -9.125152037414e-01, 5.545071184594e-04, 8.3808e+02, 4.3262e+01, - 1DIAGNOSTIC, 13, -9.128749764851e-01, 4.603333970040e-04, 8.8148e+02, 4.3403e+01, - 1DIAGNOSTIC, 14, -9.131287963716e-01, 3.710305125804e-04, 9.2483e+02, 4.3348e+01, - 1DIAGNOSTIC, 15, -9.132522225104e-01, 2.885534657620e-04, 9.6819e+02, 4.3368e+01, - 1DIAGNOSTIC, 16, -9.134348796805e-01, 2.171624619155e-04, 1.0115e+03, 4.3256e+01, - 1DIAGNOSTIC, 17, -9.135179767925e-01, 1.573577662395e-04, 1.0549e+03, 4.3476e+01, - 1DIAGNOSTIC, 18, -9.136820298809e-01, 1.122651531764e-04, 1.0983e+03, 4.3334e+01, - 1DIAGNOSTIC, 19, -9.137574546329e-01, 8.033457827560e-05, 1.1418e+03, 4.3534e+01, - 1DIAGNOSTIC, 20, -9.138344130813e-01, 5.882248572901e-05, 1.1855e+03, 4.3753e+01, - Elapsed time (stage 2): 1186 - - -Total elapsed time: 1236 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:10 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:10 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:12 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:17 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:21 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4997 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:21 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:24 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:24 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5043 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:24 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/anat/sub-PNC007_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:27 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:27 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5088 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:27 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5097 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:27 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:32 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:34 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:34 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:35 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:36 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:38 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:38 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:39 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:40 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:42 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:42 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/surf/sub-PNC007_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:43 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:35:52 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:03 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01/sub-PNC007_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC007 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:03 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC007 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:03 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC007 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:04 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5810 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:05 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:05 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc/sub-PNC007_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/xfm/sub-PNC007_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5930 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:07 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:07 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC007_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 67.433 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/logs/proc_func_18-03-2024-16091.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:13 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC007 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-01/QC/sub-PNC007_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/12520_micapipe_proc-func_sub-PNC007_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC007* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 67.500 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC007_ses-01 -========================reprocessing without filter=================== -sub-PNC007_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC007 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC007 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC007 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC007 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:17 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:36:17 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:38:22 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:40:29 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:40:43 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.42 (mm) at sub-brick 0 -++ Max delta displ in automask = 0.13 (mm) at sub-brick 180 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:52:59 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:53:18 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:55:27 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:57:36 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-02/func/sub-PNC007_ses-02_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 22:59:46 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.161 -1.415 2.116 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.6 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.125 -1.581 2.846 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.1 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:04:31 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:05:00 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x562aa4c3d6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [107.102, 64.7781, -108.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562aa4ab4730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562aa4c54320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x562aa4c40fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.8094, 126.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562aa4c46e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562aa5451230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x562aa544f5c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [107.102, 64.7781, -108.371] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562aa4c433f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562aa5f7b450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x562aa544dda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.8094, 126.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562aa4c4a360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562aa6775780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.129586094957e-01, 1.797693134862e+308, 4.0917e-02, 4.0917e-02, - 2DIAGNOSTIC, 2, -7.149145832461e-01, 1.797693134862e+308, 4.2149e-02, 1.2319e-03, - 2DIAGNOSTIC, 3, -7.177461754897e-01, 1.797693134862e+308, 4.3415e-02, 1.2660e-03, - 2DIAGNOSTIC, 4, -7.209847239215e-01, 1.797693134862e+308, 4.4643e-02, 1.2279e-03, - 2DIAGNOSTIC, 5, -7.230579941384e-01, 1.797693134862e+308, 4.5888e-02, 1.2450e-03, - 2DIAGNOSTIC, 6, -7.238714521611e-01, 1.797693134862e+308, 4.7369e-02, 1.4811e-03, - 2DIAGNOSTIC, 7, -7.250267722232e-01, 1.797693134862e+308, 4.8931e-02, 1.5619e-03, - 2DIAGNOSTIC, 8, -7.426521816940e-01, 1.797693134862e+308, 5.0446e-02, 1.5149e-03, - 2DIAGNOSTIC, 9, -7.439765835964e-01, 1.797693134862e+308, 5.2263e-02, 1.8170e-03, - 2DIAGNOSTIC, 10, -7.440699314941e-01, 2.974991879846e-03, 5.3746e-02, 1.4830e-03, - 2DIAGNOSTIC, 11, -7.449401141125e-01, 2.786861972278e-03, 5.5974e-02, 2.2290e-03, - 2DIAGNOSTIC, 12, -7.459893278415e-01, 2.475566581997e-03, 5.7484e-02, 1.5092e-03, - 2DIAGNOSTIC, 13, -7.464497849997e-01, 2.077212692797e-03, 5.8977e-02, 1.4930e-03, - 2DIAGNOSTIC, 14, -7.472780181430e-01, 1.658348933309e-03, 6.1175e-02, 2.1980e-03, - 2DIAGNOSTIC, 15, -7.477505724585e-01, 1.218028063703e-03, 6.2656e-02, 1.4811e-03, - 2DIAGNOSTIC, 16, -7.480395506907e-01, 7.535382985930e-04, 6.4141e-02, 1.4849e-03, - 2DIAGNOSTIC, 17, -7.485932166329e-01, 3.030262288230e-04, 6.5853e-02, 1.7128e-03, - 2DIAGNOSTIC, 18, -7.495928004687e-01, 2.743130918458e-04, 6.7558e-02, 1.7049e-03, - 2DIAGNOSTIC, 19, -7.508097948468e-01, 2.748250587947e-04, 6.9664e-02, 2.1060e-03, - 2DIAGNOSTIC, 20, -7.508241971847e-01, 2.514136840456e-04, 7.1350e-02, 1.6861e-03, - 2DIAGNOSTIC, 21, -7.512912105527e-01, 2.317287099769e-04, 7.2786e-02, 1.4360e-03, - 2DIAGNOSTIC, 22, -7.509850526584e-01, 2.053337360510e-04, 7.4237e-02, 1.4510e-03, - 2DIAGNOSTIC, 23, -7.512591920863e-01, 1.741143645351e-04, 7.5706e-02, 1.4682e-03, - 2DIAGNOSTIC, 24, -7.526194018007e-01, 1.639084490887e-04, 7.7126e-02, 1.4200e-03, - 2DIAGNOSTIC, 25, -7.529258014567e-01, 1.507383002262e-04, 7.8593e-02, 1.4670e-03, - 2DIAGNOSTIC, 26, -7.640170837758e-01, 2.926100768372e-04, 8.0282e-02, 1.6899e-03, - 2DIAGNOSTIC, 27, -7.771115613901e-01, 5.851582753988e-04, 8.2480e-02, 2.1980e-03, - 2DIAGNOSTIC, 28, -7.878484307390e-01, 9.568414396900e-04, 8.4667e-02, 2.1870e-03, - 2DIAGNOSTIC, 29, -7.927628978856e-01, 1.291742210723e-03, 8.6396e-02, 1.7281e-03, - 2DIAGNOSTIC, 30, -7.972766878766e-01, 1.540010951934e-03, 8.8193e-02, 1.7972e-03, - 2DIAGNOSTIC, 31, -7.987721059997e-01, 1.648581648789e-03, 8.9897e-02, 1.7040e-03, - 2DIAGNOSTIC, 32, -7.996205115112e-01, 1.598159260058e-03, 9.1346e-02, 1.4491e-03, - 2DIAGNOSTIC, 33, -8.013777804335e-01, 1.422539171103e-03, 9.2807e-02, 1.4610e-03, - 2DIAGNOSTIC, 34, -8.202347363084e-01, 1.348426284977e-03, 9.4758e-02, 1.9510e-03, - 2DIAGNOSTIC, 35, -8.351794817543e-01, 1.307882640132e-03, 9.7135e-02, 2.3770e-03, - 2DIAGNOSTIC, 36, -8.357833484795e-01, 1.263553376041e-03, 9.8600e-02, 1.4651e-03, - 2DIAGNOSTIC, 37, -8.361202016445e-01, 1.240302240610e-03, 1.0028e-01, 1.6840e-03, - 2DIAGNOSTIC, 38, -8.361612192396e-01, 1.207056360224e-03, 1.0173e-01, 1.4422e-03, - 2DIAGNOSTIC, 39, -8.363117773043e-01, 1.104821807648e-03, 1.0319e-01, 1.4620e-03, - 2DIAGNOSTIC, 40, -8.366278123355e-01, 9.448482942194e-04, 1.0486e-01, 1.6701e-03, - 2DIAGNOSTIC, 41, -8.380210452510e-01, 7.315959002772e-04, 1.0658e-01, 1.7169e-03, - 2DIAGNOSTIC, 42, -8.349213845411e-01, 4.433595277820e-04, 1.0852e-01, 1.9450e-03, - 2DIAGNOSTIC, 43, -8.373872791822e-01, 1.615263993050e-04, 1.0998e-01, 1.4610e-03, - 2DIAGNOSTIC, 44, -8.423539142499e-01, 7.308267867010e-05, 1.1165e-01, 1.6739e-03, - 2DIAGNOSTIC, 45, -8.452628398944e-01, 1.260438506007e-04, 1.1333e-01, 1.6780e-03, - 2DIAGNOSTIC, 46, -8.463063030040e-01, 1.776171826627e-04, 1.1483e-01, 1.4970e-03, - 2DIAGNOSTIC, 47, -8.474674055364e-01, 2.225502761260e-04, 1.1680e-01, 1.9722e-03, - 2DIAGNOSTIC, 48, -8.486752729101e-01, 2.537258461000e-04, 1.1849e-01, 1.6921e-03, - 2DIAGNOSTIC, 49, -8.492865642497e-01, 2.638581775927e-04, 1.2017e-01, 1.6730e-03, - 2DIAGNOSTIC, 50, -8.493835157345e-01, 2.506957272977e-04, 1.2163e-01, 1.4660e-03, - 2DIAGNOSTIC, 51, -8.494126723916e-01, 2.256356789586e-04, 1.2310e-01, 1.4639e-03, - 2DIAGNOSTIC, 52, -8.494859060325e-01, 1.591226357865e-04, 1.2454e-01, 1.4460e-03, - 2DIAGNOSTIC, 53, -8.506505734395e-01, 1.041070022138e-04, 1.2667e-01, 2.1248e-03, - 2DIAGNOSTIC, 54, -8.507681630716e-01, 7.471087748584e-05, 1.2837e-01, 1.6980e-03, - 2DIAGNOSTIC, 55, -8.507873299630e-01, 5.863634802139e-05, 1.3005e-01, 1.6820e-03, - 2DIAGNOSTIC, 56, -8.509109220779e-01, 4.518261187554e-05, 1.3151e-01, 1.4622e-03, - 2DIAGNOSTIC, 57, -8.510823675906e-01, 3.615823309221e-05, 1.3321e-01, 1.7040e-03, - 2DIAGNOSTIC, 58, -8.522547460287e-01, 3.854607768891e-05, 1.3563e-01, 2.4121e-03, - 2DIAGNOSTIC, 59, -8.523805702927e-01, 4.145632123824e-05, 1.3706e-01, 1.4338e-03, - 2DIAGNOSTIC, 60, -8.524058621931e-01, 4.125104575111e-05, 1.3852e-01, 1.4641e-03, - 2DIAGNOSTIC, 61, -8.524339655831e-01, 3.766099482076e-05, 1.3998e-01, 1.4579e-03, - 2DIAGNOSTIC, 62, -8.525748016281e-01, 3.164381632056e-05, 1.4247e-01, 2.4900e-03, - 2DIAGNOSTIC, 63, -8.525770965719e-01, 2.930879198247e-05, 1.4393e-01, 1.4551e-03, - 2DIAGNOSTIC, 64, -8.525812925577e-01, 2.495875904521e-05, 1.4537e-01, 1.4420e-03, - 2DIAGNOSTIC, 65, -8.525939317389e-01, 1.867910606784e-05, 1.4684e-01, 1.4710e-03, - 2DIAGNOSTIC, 66, -8.526189533687e-01, 1.170966911700e-05, 1.4832e-01, 1.4801e-03, - 2DIAGNOSTIC, 67, -8.527811517696e-01, 5.470140701947e-06, 1.4975e-01, 1.4319e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.975663032812e-01, 1.797693134862e+308, 1.9797e-01, 4.8220e-02, - 2DIAGNOSTIC, 2, -4.973945830582e-01, 1.797693134862e+308, 2.0068e-01, 2.7101e-03, - 2DIAGNOSTIC, 3, -4.980180717319e-01, 1.797693134862e+308, 2.0322e-01, 2.5370e-03, - 2DIAGNOSTIC, 4, -4.986926461673e-01, 1.797693134862e+308, 2.0601e-01, 2.7912e-03, - 2DIAGNOSTIC, 5, -4.997082734353e-01, 1.797693134862e+308, 2.0829e-01, 2.2769e-03, - 2DIAGNOSTIC, 6, -5.013934381806e-01, 1.797693134862e+308, 2.1051e-01, 2.2211e-03, - 2DIAGNOSTIC, 7, -5.034640655286e-01, 1.797693134862e+308, 2.1330e-01, 2.7900e-03, - 2DIAGNOSTIC, 8, -5.040784904109e-01, 1.797693134862e+308, 2.1543e-01, 2.1269e-03, - 2DIAGNOSTIC, 9, -5.059002903183e-01, 1.797693134862e+308, 2.1760e-01, 2.1720e-03, - 2DIAGNOSTIC, 10, -5.094144536014e-01, 1.478704498058e-03, 2.2034e-01, 2.7459e-03, - 2DIAGNOSTIC, 11, -5.183279026875e-01, 1.971508184991e-03, 2.2306e-01, 2.7139e-03, - 2DIAGNOSTIC, 12, -5.322608611432e-01, 2.833190389450e-03, 2.2575e-01, 2.6910e-03, - 2DIAGNOSTIC, 13, -5.404958354572e-01, 3.668019485428e-03, 2.2816e-01, 2.4130e-03, - 2DIAGNOSTIC, 14, -5.545621906986e-01, 4.624447715237e-03, 2.3195e-01, 3.7870e-03, - 2DIAGNOSTIC, 15, -5.635145850468e-01, 5.377733475948e-03, 2.3438e-01, 2.4321e-03, - 2DIAGNOSTIC, 16, -5.644370325670e-01, 5.620786866116e-03, 2.3696e-01, 2.5821e-03, - 2DIAGNOSTIC, 17, -5.742370105355e-01, 5.695376413613e-03, 2.3929e-01, 2.3301e-03, - 2DIAGNOSTIC, 18, -5.855518310315e-01, 5.583424698288e-03, 2.4229e-01, 2.9938e-03, - 2DIAGNOSTIC, 19, -5.971928757976e-01, 5.338224724992e-03, 2.4510e-01, 2.8181e-03, - 2DIAGNOSTIC, 20, -6.018804581133e-01, 4.839448945826e-03, 2.4808e-01, 2.9728e-03, - 2DIAGNOSTIC, 21, -6.088311556943e-01, 4.345095520955e-03, 2.5118e-01, 3.1040e-03, - 2DIAGNOSTIC, 22, -6.142584730471e-01, 3.958301985253e-03, 2.5575e-01, 4.5710e-03, - 2DIAGNOSTIC, 23, -6.145000301896e-01, 3.422020220304e-03, 2.5814e-01, 2.3890e-03, - 2DIAGNOSTIC, 24, -6.170447235282e-01, 2.973269556944e-03, 2.6067e-01, 2.5270e-03, - 2DIAGNOSTIC, 25, -6.189317791862e-01, 2.514489547696e-03, 2.6316e-01, 2.4929e-03, - 2DIAGNOSTIC, 26, -6.221925198791e-01, 1.940000603001e-03, 2.6618e-01, 3.0229e-03, - 2DIAGNOSTIC, 27, -6.245332238049e-01, 1.457012856572e-03, 2.6919e-01, 3.0038e-03, - 2DIAGNOSTIC, 28, -6.260481111064e-01, 1.106212591057e-03, 2.7148e-01, 2.2938e-03, - 2DIAGNOSTIC, 29, -6.296268743941e-01, 9.454863387090e-04, 2.7371e-01, 2.2230e-03, - 2DIAGNOSTIC, 30, -6.325855360826e-01, 8.327784572671e-04, 2.7628e-01, 2.5790e-03, - 2DIAGNOSTIC, 31, -6.332214505439e-01, 7.698491360177e-04, 2.7882e-01, 2.5339e-03, - 2DIAGNOSTIC, 32, -6.333502356993e-01, 7.270234380185e-04, 2.8110e-01, 2.2790e-03, - 2DIAGNOSTIC, 33, -6.335043276541e-01, 6.245829647503e-04, 2.8339e-01, 2.2910e-03, - 2DIAGNOSTIC, 34, -6.340507156648e-01, 5.144537086736e-04, 2.8565e-01, 2.2650e-03, - 2DIAGNOSTIC, 35, -6.385951078222e-01, 4.521696798387e-04, 2.8885e-01, 3.1941e-03, - 2DIAGNOSTIC, 36, -6.392202459990e-01, 4.025525272614e-04, 2.9157e-01, 2.7280e-03, - 2DIAGNOSTIC, 37, -6.392171328852e-01, 3.501719922694e-04, 2.9430e-01, 2.7211e-03, - 2DIAGNOSTIC, 38, -6.395412684280e-01, 2.917475703594e-04, 2.9667e-01, 2.3720e-03, - 2DIAGNOSTIC, 39, -6.396271635171e-01, 2.538293066709e-04, 2.9902e-01, 2.3520e-03, - 2DIAGNOSTIC, 40, -6.397972154916e-01, 2.310749522844e-04, 3.0131e-01, 2.2910e-03, - 2DIAGNOSTIC, 41, -6.420584248261e-01, 2.218775616353e-04, 3.0445e-01, 3.1402e-03, - 2DIAGNOSTIC, 42, -6.430316532893e-01, 2.050123943142e-04, 3.0706e-01, 2.6071e-03, - 2DIAGNOSTIC, 43, -6.433855287063e-01, 1.758012685576e-04, 3.0969e-01, 2.6340e-03, - 2DIAGNOSTIC, 44, -6.438263113565e-01, 1.412638088442e-04, 3.1200e-01, 2.3110e-03, - 2DIAGNOSTIC, 45, -6.442255725718e-01, 1.479535883301e-04, 3.1524e-01, 3.2380e-03, - 2DIAGNOSTIC, 46, -6.446581814021e-01, 1.509745629236e-04, 3.1760e-01, 2.3580e-03, - 2DIAGNOSTIC, 47, -6.449452036129e-01, 1.420818850303e-04, 3.2055e-01, 2.9521e-03, - 2DIAGNOSTIC, 48, -6.450387329210e-01, 1.245520714103e-04, 3.2321e-01, 2.6550e-03, - 2DIAGNOSTIC, 49, -6.450501373961e-01, 9.726189288711e-05, 3.2551e-01, 2.2988e-03, - 2DIAGNOSTIC, 50, -6.450646576148e-01, 6.319024782296e-05, 3.2781e-01, 2.3072e-03, - 2DIAGNOSTIC, 51, -6.450964590999e-01, 4.584905664079e-05, 3.3040e-01, 2.5871e-03, - 2DIAGNOSTIC, 52, -6.458521267951e-01, 4.072261941516e-05, 3.3330e-01, 2.8970e-03, - 2DIAGNOSTIC, 53, -6.462997732895e-01, 3.895444251025e-05, 3.3601e-01, 2.7130e-03, - 2DIAGNOSTIC, 54, -6.464768857920e-01, 3.898324365366e-05, 3.3840e-01, 2.3909e-03, - 2DIAGNOSTIC, 55, -6.466173870788e-01, 4.003821665325e-05, 3.4111e-01, 2.7089e-03, - 2DIAGNOSTIC, 56, -6.466466779933e-01, 4.114312352499e-05, 3.4380e-01, 2.6908e-03, - 2DIAGNOSTIC, 57, -6.467250728971e-01, 4.124505416413e-05, 3.4613e-01, 2.3329e-03, - 2DIAGNOSTIC, 58, -6.468119360488e-01, 3.882900555720e-05, 3.4872e-01, 2.5899e-03, - 2DIAGNOSTIC, 59, -6.468404905818e-01, 3.319720709545e-05, 3.5098e-01, 2.2540e-03, - 2DIAGNOSTIC, 60, -6.471497191776e-01, 2.728894716332e-05, 3.5327e-01, 2.2919e-03, - 2DIAGNOSTIC, 61, -6.478346951168e-01, 2.439078911130e-05, 3.5552e-01, 2.2550e-03, - 2DIAGNOSTIC, 62, -6.485678870095e-01, 3.041290483531e-05, 3.5778e-01, 2.2540e-03, - 2DIAGNOSTIC, 63, -6.500434989600e-01, 4.761856557914e-05, 3.6068e-01, 2.9030e-03, - 2DIAGNOSTIC, 64, -6.503282894506e-01, 6.291321811408e-05, 3.6357e-01, 2.8899e-03, - 2DIAGNOSTIC, 65, -6.508055971710e-01, 7.626923435564e-05, 3.6620e-01, 2.6309e-03, - 2DIAGNOSTIC, 66, -6.526039735357e-01, 9.485680708898e-05, 3.6851e-01, 2.3129e-03, - 2DIAGNOSTIC, 67, -6.598426054329e-01, 1.544426013920e-04, 3.7113e-01, 2.6138e-03, - 2DIAGNOSTIC, 68, -6.650680625407e-01, 2.324694428187e-04, 3.7461e-01, 3.4850e-03, - 2DIAGNOSTIC, 69, -6.653637203109e-01, 2.876585945442e-04, 3.7685e-01, 2.2321e-03, - 2DIAGNOSTIC, 70, -6.657124829990e-01, 3.189855140743e-04, 3.7909e-01, 2.2461e-03, - 2DIAGNOSTIC, 71, -6.665183391837e-01, 3.285784817455e-04, 3.8136e-01, 2.2659e-03, - 2DIAGNOSTIC, 72, -6.671527679986e-01, 3.138492532858e-04, 3.8392e-01, 2.5649e-03, - 2DIAGNOSTIC, 73, -6.675903969363e-01, 2.809430250709e-04, 3.8760e-01, 3.6778e-03, - 2DIAGNOSTIC, 74, -6.676390287543e-01, 2.247432037148e-04, 3.9004e-01, 2.4381e-03, - 2DIAGNOSTIC, 75, -6.676996614512e-01, 1.526488391415e-04, 3.9266e-01, 2.6221e-03, - 2DIAGNOSTIC, 76, -6.677561783083e-01, 7.831357501284e-05, 3.9498e-01, 2.3232e-03, - 2DIAGNOSTIC, 77, -6.677630901310e-01, 4.110960332429e-05, 3.9726e-01, 2.2721e-03, - 2DIAGNOSTIC, 78, -6.679012598867e-01, 3.275976069572e-05, 3.9982e-01, 2.5661e-03, - 2DIAGNOSTIC, 79, -6.680029535401e-01, 2.386598964923e-05, 4.0242e-01, 2.5940e-03, - 2DIAGNOSTIC, 80, -6.681270379244e-01, 1.561182358664e-05, 4.0469e-01, 2.2769e-03, - 2DIAGNOSTIC, 81, -6.683069591155e-01, 1.163640543779e-05, 4.0727e-01, 2.5761e-03, - 2DIAGNOSTIC, 82, -6.690912372338e-01, 1.455835148178e-05, 4.1079e-01, 3.5200e-03, - 2DIAGNOSTIC, 83, -6.691983076180e-01, 1.893803345789e-05, 4.1389e-01, 3.0990e-03, - 2DIAGNOSTIC, 84, -6.692361550575e-01, 2.191968740794e-05, 4.1735e-01, 3.4580e-03, - 2DIAGNOSTIC, 85, -6.692613286634e-01, 2.326781576244e-05, 4.2045e-01, 3.1030e-03, - 2DIAGNOSTIC, 86, -6.695465699530e-01, 2.418334211161e-05, 4.2329e-01, 2.8450e-03, - 2DIAGNOSTIC, 87, -6.700480275645e-01, 2.533434676277e-05, 4.2577e-01, 2.4731e-03, - 2DIAGNOSTIC, 88, -6.704256991865e-01, 2.665440224717e-05, 4.2907e-01, 3.3040e-03, - 2DIAGNOSTIC, 89, -6.703920168139e-01, 2.580559015451e-05, 4.3268e-01, 3.6051e-03, - 2DIAGNOSTIC, 90, -6.704219463568e-01, 2.339275656590e-05, 4.3624e-01, 3.5601e-03, - 2DIAGNOSTIC, 91, -6.705603106251e-01, 2.029439846974e-05, 4.3950e-01, 3.2659e-03, - 2DIAGNOSTIC, 92, -6.706761970718e-01, 1.971405909022e-05, 4.4211e-01, 2.6040e-03, - 2DIAGNOSTIC, 93, -6.706376149847e-01, 1.758568096684e-05, 4.4461e-01, 2.5029e-03, - 2DIAGNOSTIC, 94, -6.707158813724e-01, 1.447370622632e-05, 4.4760e-01, 2.9919e-03, - 2DIAGNOSTIC, 95, -6.706788110258e-01, 1.002151552026e-05, 4.4983e-01, 2.2271e-03, - 2DIAGNOSTIC, 96, -6.706874518532e-01, 6.068016531814e-06, 4.5226e-01, 2.4290e-03, - 2DIAGNOSTIC, 97, -6.708267693159e-01, 4.588169666775e-06, 4.5501e-01, 2.7580e-03, - 2DIAGNOSTIC, 98, -6.708944011964e-01, 4.786524189240e-06, 4.5776e-01, 2.7430e-03, - 2DIAGNOSTIC, 99, -6.708873325045e-01, 4.371651978726e-06, 4.5988e-01, 2.1269e-03, - 2DIAGNOSTIC, 100, -6.708573803004e-01, 3.577509061816e-06, 4.6202e-01, 2.1341e-03, - 2DIAGNOSTIC, 101, -6.708659349408e-01, 3.139792493006e-06, 4.6441e-01, 2.3899e-03, - 2DIAGNOSTIC, 102, -6.708719550962e-01, 2.971847457086e-06, 4.6651e-01, 2.0981e-03, - 2DIAGNOSTIC, 103, -6.708842276306e-01, 2.415670706987e-06, 4.6863e-01, 2.1250e-03, - 2DIAGNOSTIC, 104, -6.709018958421e-01, 2.099729079341e-06, 4.7103e-01, 2.4009e-03, - 2DIAGNOSTIC, 105, -6.710805760965e-01, 2.239028830259e-06, 4.7467e-01, 3.6330e-03, - 2DIAGNOSTIC, 106, -6.710360507144e-01, 2.003055842742e-06, 4.7679e-01, 2.1250e-03, - 2DIAGNOSTIC, 107, -6.709963706657e-01, 2.032791491934e-06, 4.7894e-01, 2.1441e-03, - 2DIAGNOSTIC, 108, -6.710003396217e-01, 2.207696517391e-06, 4.8106e-01, 2.1229e-03, - 2DIAGNOSTIC, 109, -6.710996422325e-01, 2.571386210848e-06, 4.8321e-01, 2.1479e-03, - 2DIAGNOSTIC, 110, -6.711028440767e-01, 2.573718319356e-06, 4.8569e-01, 2.4810e-03, - 2DIAGNOSTIC, 111, -6.710380938715e-01, 2.135496599659e-06, 4.8815e-01, 2.4619e-03, - 2DIAGNOSTIC, 112, -6.711435264898e-01, 2.003927624339e-06, 4.9133e-01, 3.1819e-03, - 2DIAGNOSTIC, 113, -6.710356929802e-01, 1.317609640259e-06, 4.9356e-01, 2.2252e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.135321690256e-01, 1.797693134862e+308, 5.6527e-01, 7.1714e-02, - 2DIAGNOSTIC, 2, -5.138046662401e-01, 1.797693134862e+308, 5.7726e-01, 1.1993e-02, - 2DIAGNOSTIC, 3, -5.143252744427e-01, 1.797693134862e+308, 5.8968e-01, 1.2420e-02, - 2DIAGNOSTIC, 4, -5.150851264922e-01, 1.797693134862e+308, 6.0201e-01, 1.2325e-02, - 2DIAGNOSTIC, 5, -5.160683147797e-01, 1.797693134862e+308, 6.1421e-01, 1.2205e-02, - 2DIAGNOSTIC, 6, -5.172906355846e-01, 1.797693134862e+308, 6.3149e-01, 1.7282e-02, - 2DIAGNOSTIC, 7, -5.172876185321e-01, 1.797693134862e+308, 6.4552e-01, 1.4027e-02, - 2DIAGNOSTIC, 8, -5.173074767164e-01, 1.797693134862e+308, 6.5742e-01, 1.1895e-02, - 2DIAGNOSTIC, 9, -5.173253662474e-01, 1.797693134862e+308, 6.7329e-01, 1.5875e-02, - 2DIAGNOSTIC, 10, -5.173276639742e-01, 5.648029573572e-04, 6.8754e-01, 1.4246e-02, - 2DIAGNOSTIC, 11, -5.173250780352e-01, 4.181547858203e-04, 7.0109e-01, 1.3548e-02, - 2DIAGNOSTIC, 12, -5.173325420164e-01, 2.718996859800e-04, 7.1389e-01, 1.2801e-02, - 2DIAGNOSTIC, 13, -5.173565952840e-01, 1.473490205801e-04, 7.2584e-01, 1.1954e-02, - 2DIAGNOSTIC, 14, -5.173921635957e-01, 5.816929827668e-05, 7.3779e-01, 1.1950e-02, - 2DIAGNOSTIC, 15, -5.174244258215e-01, 1.175669479306e-05, 7.4925e-01, 1.1457e-02, - 2DIAGNOSTIC, 16, -5.174785332050e-01, 1.419118221789e-05, 7.6031e-01, 1.1061e-02, - 2DIAGNOSTIC, 17, -5.176517866843e-01, 2.068932353531e-05, 7.7292e-01, 1.2610e-02, - 2DIAGNOSTIC, 18, -5.177680515795e-01, 2.873708014027e-05, 7.8535e-01, 1.2431e-02, - 2DIAGNOSTIC, 19, -5.178856205667e-01, 3.732531322886e-05, 8.0471e-01, 1.9356e-02, - 2DIAGNOSTIC, 20, -5.179156981750e-01, 4.264560111515e-05, 8.1558e-01, 1.0878e-02, - 2DIAGNOSTIC, 21, -5.180099721842e-01, 4.607203369073e-05, 8.2633e-01, 1.0744e-02, - 2DIAGNOSTIC, 22, -5.181519921363e-01, 4.866940873270e-05, 8.3851e-01, 1.2183e-02, - 2DIAGNOSTIC, 23, -5.182081722758e-01, 4.841526501995e-05, 8.5075e-01, 1.2235e-02, - 2DIAGNOSTIC, 24, -5.182277296846e-01, 4.507499622262e-05, 8.6296e-01, 1.2219e-02, - 2DIAGNOSTIC, 25, -5.182548215851e-01, 3.927832624154e-05, 8.7539e-01, 1.2428e-02, - 2DIAGNOSTIC, 26, -5.182728102229e-01, 3.180444632502e-05, 8.8624e-01, 1.0846e-02, - 2DIAGNOSTIC, 27, -5.183088234606e-01, 2.617842678527e-05, 8.9771e-01, 1.1475e-02, - 2DIAGNOSTIC, 28, -5.184433627256e-01, 2.345301110362e-05, 9.1206e-01, 1.4347e-02, - 2DIAGNOSTIC, 29, -5.185134826472e-01, 2.234277369343e-05, 9.2651e-01, 1.4444e-02, - 2DIAGNOSTIC, 30, -5.185381066304e-01, 2.029143147179e-05, 9.3954e-01, 1.3036e-02, - 2DIAGNOSTIC, 31, -5.185409332837e-01, 1.825085058305e-05, 9.5173e-01, 1.2192e-02, - 2DIAGNOSTIC, 32, -5.185967613839e-01, 1.808977468721e-05, 9.6321e-01, 1.1475e-02, - 2DIAGNOSTIC, 33, -5.186311574221e-01, 1.776220618249e-05, 9.7460e-01, 1.1395e-02, - 2DIAGNOSTIC, 34, -5.187711584040e-01, 1.840435723914e-05, 9.9547e-01, 2.0869e-02, - 2DIAGNOSTIC, 35, -5.187766319257e-01, 1.784148205980e-05, 1.0063e+00, 1.0834e-02, - 2DIAGNOSTIC, 36, -5.187703930504e-01, 1.593225502430e-05, 1.0182e+00, 1.1940e-02, - 2DIAGNOSTIC, 37, -5.187778772518e-01, 1.332284290077e-05, 1.0301e+00, 1.1822e-02, - 2DIAGNOSTIC, 38, -5.187668260448e-01, 1.140284048989e-05, 1.0433e+00, 1.3274e-02, - 2DIAGNOSTIC, 39, -5.187667810355e-01, 9.533685807313e-06, 1.0539e+00, 1.0526e-02, - 2DIAGNOSTIC, 40, -5.187707351596e-01, 7.326780977906e-06, 1.0672e+00, 1.3319e-02, - 2DIAGNOSTIC, 41, -5.187695151459e-01, 4.637692806925e-06, 1.0794e+00, 1.2255e-02, - 2DIAGNOSTIC, 42, -5.187675259930e-01, 2.422726227542e-06, 1.0911e+00, 1.1680e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.338868988533e-01, 1.797693134862e+308, 1.3049e+00, 2.1379e-01, - Elapsed time (stage 0): 1.3333e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.974741164892e-01, 1.797693134862e+308, 3.5793e-02, 3.5793e-02, - 2DIAGNOSTIC, 2, -9.999798891096e-01, 1.797693134862e+308, 3.7045e-02, 1.2519e-03, - 2DIAGNOSTIC, 3, -1.003718710551e+00, 1.797693134862e+308, 3.8333e-02, 1.2879e-03, - 2DIAGNOSTIC, 4, -1.009734386065e+00, 1.797693134862e+308, 3.9659e-02, 1.3261e-03, - 2DIAGNOSTIC, 5, -1.022598738097e+00, 1.797693134862e+308, 4.0995e-02, 1.3361e-03, - 2DIAGNOSTIC, 6, -1.032168783999e+00, 1.797693134862e+308, 4.2562e-02, 1.5671e-03, - 2DIAGNOSTIC, 7, -1.039006005933e+00, 1.797693134862e+308, 4.5214e-02, 2.6519e-03, - 2DIAGNOSTIC, 8, -1.039434544604e+00, 1.797693134862e+308, 4.6525e-02, 1.3111e-03, - 2DIAGNOSTIC, 9, -1.040651913612e+00, 1.797693134862e+308, 4.7804e-02, 1.2789e-03, - 2DIAGNOSTIC, 10, -1.041746432728e+00, 3.341679720419e-03, 4.9307e-02, 1.5030e-03, - 2DIAGNOSTIC, 11, -1.042877598486e+00, 2.696787084880e-03, 5.0799e-02, 1.4920e-03, - 2DIAGNOSTIC, 12, -1.040747107854e+00, 1.929489580903e-03, 5.2525e-02, 1.7259e-03, - 2DIAGNOSTIC, 13, -1.040596359042e+00, 1.188556396250e-03, 5.4325e-02, 1.8001e-03, - 2DIAGNOSTIC, 14, -1.041426109478e+00, 5.789184449407e-04, 5.6107e-02, 1.7819e-03, - 2DIAGNOSTIC, 15, -1.041809565898e+00, 2.378916401322e-04, 5.7875e-02, 1.7681e-03, - 2DIAGNOSTIC, 16, -1.041263931421e+00, 7.079555177766e-05, 5.9350e-02, 1.4749e-03, - 2DIAGNOSTIC, 17, -1.040724779485e+00, 2.082538671817e-05, 6.0854e-02, 1.5042e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.921634883313e-01, 1.797693134862e+308, 1.0620e-01, 4.5343e-02, - 2DIAGNOSTIC, 2, -6.929856201216e-01, 1.797693134862e+308, 1.0911e-01, 2.9140e-03, - 2DIAGNOSTIC, 3, -6.948237844916e-01, 1.797693134862e+308, 1.1184e-01, 2.7318e-03, - 2DIAGNOSTIC, 4, -6.974613437118e-01, 1.797693134862e+308, 1.1431e-01, 2.4650e-03, - 2DIAGNOSTIC, 5, -7.020160909790e-01, 1.797693134862e+308, 1.1675e-01, 2.4390e-03, - 2DIAGNOSTIC, 6, -7.088682918616e-01, 1.797693134862e+308, 1.1908e-01, 2.3329e-03, - 2DIAGNOSTIC, 7, -7.280440226589e-01, 1.797693134862e+308, 1.2195e-01, 2.8691e-03, - 2DIAGNOSTIC, 8, -7.483599153119e-01, 1.797693134862e+308, 1.2666e-01, 4.7150e-03, - 2DIAGNOSTIC, 9, -7.484682771054e-01, 1.797693134862e+308, 1.2923e-01, 2.5640e-03, - 2DIAGNOSTIC, 10, -7.485727897504e-01, 6.268502548012e-03, 1.3206e-01, 2.8291e-03, - 2DIAGNOSTIC, 11, -7.485742839023e-01, 5.865084989571e-03, 1.3456e-01, 2.4989e-03, - 2DIAGNOSTIC, 12, -7.486407444903e-01, 5.024594732028e-03, 1.3736e-01, 2.8050e-03, - 2DIAGNOSTIC, 13, -7.487814526465e-01, 3.915678793045e-03, 1.3986e-01, 2.5010e-03, - 2DIAGNOSTIC, 14, -7.489237711600e-01, 2.698594670215e-03, 1.4233e-01, 2.4710e-03, - 2DIAGNOSTIC, 15, -7.493133455039e-01, 1.541298135684e-03, 1.4510e-01, 2.7680e-03, - 2DIAGNOSTIC, 16, -7.497619795890e-01, 5.623571649526e-04, 1.4758e-01, 2.4798e-03, - 2DIAGNOSTIC, 17, -7.504174535506e-01, 9.112780614796e-05, 1.5019e-01, 2.6140e-03, - 2DIAGNOSTIC, 18, -7.515063373115e-01, 1.275445207953e-04, 1.5281e-01, 2.6162e-03, - 2DIAGNOSTIC, 19, -7.526865502356e-01, 1.742521318183e-04, 1.5531e-01, 2.4951e-03, - 2DIAGNOSTIC, 20, -7.539794531208e-01, 2.269149159834e-04, 1.5808e-01, 2.7740e-03, - 2DIAGNOSTIC, 21, -7.548256763258e-01, 2.688140394095e-04, 1.6080e-01, 2.7239e-03, - 2DIAGNOSTIC, 22, -7.552724011642e-01, 2.908510589199e-04, 1.6394e-01, 3.1328e-03, - 2DIAGNOSTIC, 23, -7.554103463325e-01, 2.885748040926e-04, 1.6643e-01, 2.4889e-03, - 2DIAGNOSTIC, 24, -7.560338606169e-01, 2.717617572370e-04, 1.6889e-01, 2.4679e-03, - 2DIAGNOSTIC, 25, -7.572510487675e-01, 2.553130433014e-04, 1.7145e-01, 2.5611e-03, - 2DIAGNOSTIC, 26, -7.582078671423e-01, 2.366094575820e-04, 1.7392e-01, 2.4700e-03, - 2DIAGNOSTIC, 27, -7.588445014758e-01, 2.154336319639e-04, 1.7727e-01, 3.3500e-03, - 2DIAGNOSTIC, 28, -7.591037910517e-01, 1.941448457438e-04, 1.7970e-01, 2.4250e-03, - 2DIAGNOSTIC, 29, -7.593622003820e-01, 1.749295279485e-04, 1.8340e-01, 3.7010e-03, - 2DIAGNOSTIC, 30, -7.594225752699e-01, 1.574282780398e-04, 1.8584e-01, 2.4440e-03, - 2DIAGNOSTIC, 31, -7.594842886293e-01, 1.372870169542e-04, 1.8857e-01, 2.7301e-03, - 2DIAGNOSTIC, 32, -7.595327395621e-01, 1.115920986214e-04, 1.9135e-01, 2.7730e-03, - 2DIAGNOSTIC, 33, -7.593854496726e-01, 7.695859039644e-05, 1.9384e-01, 2.4910e-03, - 2DIAGNOSTIC, 34, -7.593406505568e-01, 4.356209897727e-05, 1.9629e-01, 2.4550e-03, - 2DIAGNOSTIC, 35, -7.594927239336e-01, 2.282428098264e-05, 1.9873e-01, 2.4359e-03, - 2DIAGNOSTIC, 36, -7.595976125725e-01, 1.223383871954e-05, 2.0146e-01, 2.7270e-03, - 2DIAGNOSTIC, 37, -7.596896780255e-01, 8.606396891576e-06, 2.0421e-01, 2.7521e-03, - 2DIAGNOSTIC, 38, -7.597230936565e-01, 7.354844230898e-06, 2.0676e-01, 2.5501e-03, - 2DIAGNOSTIC, 39, -7.602487104342e-01, 1.323656896821e-05, 2.1062e-01, 3.8571e-03, - 2DIAGNOSTIC, 40, -7.603559854645e-01, 1.904715938827e-05, 2.1312e-01, 2.5091e-03, - 2DIAGNOSTIC, 41, -7.603939300085e-01, 2.372935995272e-05, 2.1586e-01, 2.7399e-03, - 2DIAGNOSTIC, 42, -7.604915428852e-01, 2.743552854557e-05, 2.1862e-01, 2.7599e-03, - 2DIAGNOSTIC, 43, -7.605554324992e-01, 2.769363009831e-05, 2.2106e-01, 2.4371e-03, - 2DIAGNOSTIC, 44, -7.606382770553e-01, 2.559908357648e-05, 2.2379e-01, 2.7330e-03, - 2DIAGNOSTIC, 45, -7.608063341518e-01, 2.388221557048e-05, 2.2654e-01, 2.7471e-03, - 2DIAGNOSTIC, 46, -7.610231133179e-01, 2.270103341058e-05, 2.2931e-01, 2.7649e-03, - 2DIAGNOSTIC, 47, -7.612213449740e-01, 2.183064809153e-05, 2.3175e-01, 2.4419e-03, - 2DIAGNOSTIC, 48, -7.613095056068e-01, 1.981422522420e-05, 2.3448e-01, 2.7330e-03, - 2DIAGNOSTIC, 49, -7.615313502402e-01, 2.183992708939e-05, 2.3759e-01, 3.1099e-03, - 2DIAGNOSTIC, 50, -7.621102335755e-01, 2.692407346022e-05, 2.4034e-01, 2.7459e-03, - 2DIAGNOSTIC, 51, -7.621495019691e-01, 2.972561960387e-05, 2.4277e-01, 2.4278e-03, - 2DIAGNOSTIC, 52, -7.620920391402e-01, 2.997073991102e-05, 2.4578e-01, 3.0129e-03, - 2DIAGNOSTIC, 53, -7.621084677229e-01, 2.804876814861e-05, 2.4862e-01, 2.8372e-03, - 2DIAGNOSTIC, 54, -7.620385874685e-01, 2.361644581061e-05, 2.5112e-01, 2.5091e-03, - 2DIAGNOSTIC, 55, -7.619561254594e-01, 1.764589067715e-05, 2.5391e-01, 2.7809e-03, - 2DIAGNOSTIC, 56, -7.619612217534e-01, 1.174190320527e-05, 2.5668e-01, 2.7711e-03, - 2DIAGNOSTIC, 57, -7.618754493859e-01, 5.776368284336e-06, 2.5944e-01, 2.7621e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.711319400140e-01, 1.797693134862e+308, 3.2297e-01, 6.3536e-02, - 2DIAGNOSTIC, 2, -5.713211263984e-01, 1.797693134862e+308, 3.3668e-01, 1.3705e-02, - 2DIAGNOSTIC, 3, -5.715715426142e-01, 1.797693134862e+308, 3.5038e-01, 1.3701e-02, - 2DIAGNOSTIC, 4, -5.718913505395e-01, 1.797693134862e+308, 3.6239e-01, 1.2008e-02, - 2DIAGNOSTIC, 5, -5.725009118761e-01, 1.797693134862e+308, 3.7534e-01, 1.2956e-02, - 2DIAGNOSTIC, 6, -5.727666281575e-01, 1.797693134862e+308, 3.9022e-01, 1.4876e-02, - 2DIAGNOSTIC, 7, -5.728022556623e-01, 1.797693134862e+308, 4.0219e-01, 1.1969e-02, - 2DIAGNOSTIC, 8, -5.731317747423e-01, 1.797693134862e+308, 4.1551e-01, 1.3322e-02, - 2DIAGNOSTIC, 9, -5.734454433851e-01, 1.797693134862e+308, 4.2947e-01, 1.3959e-02, - 2DIAGNOSTIC, 10, -5.737245210481e-01, 3.017258675230e-04, 4.4311e-01, 1.3638e-02, - 2DIAGNOSTIC, 11, -5.739451831191e-01, 2.689735549196e-04, 4.5517e-01, 1.2066e-02, - 2DIAGNOSTIC, 12, -5.741820041587e-01, 2.356946467412e-04, 4.7042e-01, 1.5245e-02, - 2DIAGNOSTIC, 13, -5.747105582741e-01, 2.160752129425e-04, 4.8448e-01, 1.4061e-02, - 2DIAGNOSTIC, 14, -5.752805787647e-01, 2.103180540739e-04, 4.9693e-01, 1.2451e-02, - 2DIAGNOSTIC, 15, -5.756567661962e-01, 2.184360477616e-04, 5.1460e-01, 1.7671e-02, - 2DIAGNOSTIC, 16, -5.759022526932e-01, 2.217567698114e-04, 5.2746e-01, 1.2859e-02, - 2DIAGNOSTIC, 17, -5.759608383672e-01, 2.071709850836e-04, 5.4044e-01, 1.2975e-02, - 2DIAGNOSTIC, 18, -5.761189830443e-01, 1.884902335767e-04, 5.5367e-01, 1.3230e-02, - 2DIAGNOSTIC, 19, -5.769249762777e-01, 1.832863551261e-04, 5.7875e-01, 2.5083e-02, - 2DIAGNOSTIC, 20, -5.769740029235e-01, 1.692513133722e-04, 5.9478e-01, 1.6034e-02, - 2DIAGNOSTIC, 21, -5.771814310197e-01, 1.513632308568e-04, 6.0937e-01, 1.4585e-02, - 2DIAGNOSTIC, 22, -5.775949162603e-01, 1.358168489867e-04, 6.2329e-01, 1.3923e-02, - 2DIAGNOSTIC, 23, -5.779193724774e-01, 1.269283727730e-04, 6.3618e-01, 1.2886e-02, - 2DIAGNOSTIC, 24, -5.782379971348e-01, 1.248741794981e-04, 6.4906e-01, 1.2885e-02, - 2DIAGNOSTIC, 25, -5.784075468180e-01, 1.220444171051e-04, 6.6548e-01, 1.6419e-02, - 2DIAGNOSTIC, 26, -5.784924648380e-01, 1.145955709988e-04, 6.7763e-01, 1.2151e-02, - 2DIAGNOSTIC, 27, -5.786029469704e-01, 1.001533620250e-04, 6.9292e-01, 1.5292e-02, - 2DIAGNOSTIC, 28, -5.789432924438e-01, 8.573911438296e-05, 7.1291e-01, 1.9983e-02, - 2DIAGNOSTIC, 29, -5.789715260491e-01, 7.843895499215e-05, 7.2509e-01, 1.2178e-02, - 2DIAGNOSTIC, 30, -5.790802583250e-01, 6.699735037576e-05, 7.3775e-01, 1.2660e-02, - 2DIAGNOSTIC, 31, -5.791671335243e-01, 5.470716728549e-05, 7.5092e-01, 1.3174e-02, - 2DIAGNOSTIC, 32, -5.792213935277e-01, 4.521473110833e-05, 7.6403e-01, 1.3110e-02, - 2DIAGNOSTIC, 33, -5.792659911051e-01, 3.746796634656e-05, 7.7887e-01, 1.4840e-02, - 2DIAGNOSTIC, 34, -5.793071305659e-01, 3.188754725767e-05, 7.9193e-01, 1.3056e-02, - 2DIAGNOSTIC, 35, -5.793523489075e-01, 2.674970379366e-05, 8.0979e-01, 1.7867e-02, - 2DIAGNOSTIC, 36, -5.794134935168e-01, 2.143363172529e-05, 8.2444e-01, 1.4644e-02, - 2DIAGNOSTIC, 37, -5.794222984850e-01, 1.591395597029e-05, 8.3917e-01, 1.4734e-02, - 2DIAGNOSTIC, 38, -5.794365205933e-01, 1.388146993396e-05, 8.5210e-01, 1.2928e-02, - 2DIAGNOSTIC, 39, -5.794394953454e-01, 1.108652510340e-05, 8.6477e-01, 1.2676e-02, - 2DIAGNOSTIC, 40, -5.794928188774e-01, 9.425611238477e-06, 8.7757e-01, 1.2798e-02, - 2DIAGNOSTIC, 41, -5.795482741158e-01, 8.700288857730e-06, 8.9244e-01, 1.4873e-02, - 2DIAGNOSTIC, 42, -5.796082174534e-01, 8.577673564124e-06, 9.0633e-01, 1.3884e-02, - 2DIAGNOSTIC, 43, -5.797546136413e-01, 9.902030395741e-06, 9.2714e-01, 2.0810e-02, - 2DIAGNOSTIC, 44, -5.797472339175e-01, 1.063187735490e-05, 9.4121e-01, 1.4069e-02, - 2DIAGNOSTIC, 45, -5.797416617880e-01, 1.082057138646e-05, 9.5918e-01, 1.7975e-02, - 2DIAGNOSTIC, 46, -5.797431210709e-01, 1.071561992672e-05, 9.7917e-01, 1.9990e-02, - 2DIAGNOSTIC, 47, -5.797441585615e-01, 9.743359600172e-06, 9.9267e-01, 1.3497e-02, - 2DIAGNOSTIC, 48, -5.797402282622e-01, 8.036048039443e-06, 1.0048e+00, 1.2113e-02, - 2DIAGNOSTIC, 49, -5.797321678625e-01, 5.640102359181e-06, 1.0189e+00, 1.4080e-02, - 2DIAGNOSTIC, 50, -5.797286719136e-01, 3.371238816507e-06, 1.0313e+00, 1.2429e-02, - 2DIAGNOSTIC, 51, -5.797258954746e-01, 1.437056235280e-06, 1.0445e+00, 1.3207e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.815443991873e-01, 1.797693134862e+308, 1.2368e+00, 1.9230e-01, - Elapsed time (stage 1): 1.2593e+00 - - -Total elapsed time: 2.5932e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:05:04 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 28 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 52 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 59.61% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 59.61% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[ 1170 866 312 18891 2178 2197 1843 330 148 10115 172 0 - 0 0 8554 500 1324 866 4148 1368 0 1214 935 182 - 272 193 487 179] -[25785 16492 8729 6787 2878 1600 5857 6763 8069 1063 3355 3461 - 2796 2011 911 1058 578 868 591 755 558 163 407 936 - 0 0 147 407] -[ 527 9533 0 0 579 0 160 0 19927 146 157 10032 - 0 0 403 11175 0 0 0 0 0 7789 0 3620 - 0 13266 2592 0] -[14926 168 6016 1412 3112 1808 2399 1142 0 11434 2089 0 - 815 311 15035 0 158 7486 3768 3168 7187 0 410 0 - 1032 191 220 301] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:12:49 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:12:55 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:39 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:39 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:39 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:48 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:16:52 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC007 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:17:21 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:17:46 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:19:34 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:19:35 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:20:55 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:20:56 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x557856e74d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [75.2586, 126.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557856ceb730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7efd800b4010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x557856e78020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557856e7e0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7efd7c9f5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x557856e8e840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [75.2586, 126.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557856e7a890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7efd77d21010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x557856e923e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557856e81130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7efd74662010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.682512953879e-01, 1.797693134862e+308, 2.3918e-01, 2.3918e-01, - 2DIAGNOSTIC, 2, -4.701855838086e-01, 1.797693134862e+308, 2.4098e-01, 1.8029e-03, - 2DIAGNOSTIC, 3, -4.734079768531e-01, 1.797693134862e+308, 2.4268e-01, 1.6901e-03, - 2DIAGNOSTIC, 4, -4.758197896684e-01, 1.797693134862e+308, 2.4433e-01, 1.6520e-03, - 2DIAGNOSTIC, 5, -4.800597212623e-01, 1.797693134862e+308, 2.4603e-01, 1.6990e-03, - 2DIAGNOSTIC, 6, -4.867974008620e-01, 1.797693134862e+308, 2.4774e-01, 1.7159e-03, - 2DIAGNOSTIC, 7, -4.989269657413e-01, 1.797693134862e+308, 2.4945e-01, 1.7130e-03, - 2DIAGNOSTIC, 8, -5.329130978894e-01, 1.797693134862e+308, 2.5165e-01, 2.1920e-03, - 2DIAGNOSTIC, 9, -5.371371518316e-01, 1.797693134862e+308, 2.5319e-01, 1.5380e-03, - 2DIAGNOSTIC, 10, -5.379893750112e-01, 1.042358532366e-02, 2.5472e-01, 1.5328e-03, - 2DIAGNOSTIC, 11, -5.388548036963e-01, 1.006938576489e-02, 2.5619e-01, 1.4732e-03, - 2DIAGNOSTIC, 12, -5.403878290261e-01, 9.028479798837e-03, 2.5788e-01, 1.6880e-03, - 2DIAGNOSTIC, 13, -5.419289644645e-01, 7.527827826760e-03, 2.5993e-01, 2.0528e-03, - 2DIAGNOSTIC, 14, -5.435487033292e-01, 5.732651352284e-03, 2.6135e-01, 1.4210e-03, - 2DIAGNOSTIC, 15, -5.435870129408e-01, 3.847109740410e-03, 2.6275e-01, 1.3950e-03, - 2DIAGNOSTIC, 16, -5.444259822832e-01, 2.127131313438e-03, 2.6438e-01, 1.6320e-03, - 2DIAGNOSTIC, 17, -5.449158935370e-01, 8.049162904752e-04, 2.6586e-01, 1.4789e-03, - 2DIAGNOSTIC, 18, -5.461902543241e-01, 6.364389551793e-04, 2.6750e-01, 1.6389e-03, - 2DIAGNOSTIC, 19, -5.469824113065e-01, 5.715524664585e-04, 2.6895e-01, 1.4482e-03, - 2DIAGNOSTIC, 20, -5.483805314658e-01, 5.223806241936e-04, 2.7041e-01, 1.4629e-03, - 2DIAGNOSTIC, 21, -5.532032445279e-01, 5.764996987534e-04, 2.7255e-01, 2.1369e-03, - 2DIAGNOSTIC, 22, -5.541694062893e-01, 6.298912626794e-04, 2.7418e-01, 1.6391e-03, - 2DIAGNOSTIC, 23, -5.541494054441e-01, 6.554521910530e-04, 2.7589e-01, 1.7030e-03, - 2DIAGNOSTIC, 24, -5.548194146465e-01, 6.710534329885e-04, 2.7757e-01, 1.6789e-03, - 2DIAGNOSTIC, 25, -5.555651592668e-01, 6.384904315738e-04, 2.7919e-01, 1.6241e-03, - 2DIAGNOSTIC, 26, -5.573204436560e-01, 6.005375273936e-04, 2.8083e-01, 1.6420e-03, - 2DIAGNOSTIC, 27, -5.578484431362e-01, 5.280758690865e-04, 2.8245e-01, 1.6179e-03, - 2DIAGNOSTIC, 28, -5.577572456173e-01, 4.357481438552e-04, 2.8407e-01, 1.6170e-03, - 2DIAGNOSTIC, 29, -5.579107882467e-01, 3.276442959722e-04, 2.8616e-01, 2.0950e-03, - 2DIAGNOSTIC, 30, -5.580306679891e-01, 2.207137440551e-04, 2.8797e-01, 1.8101e-03, - 2DIAGNOSTIC, 31, -5.581879016898e-01, 1.849911728192e-04, 2.9008e-01, 2.1031e-03, - 2DIAGNOSTIC, 32, -5.584871122201e-01, 1.553423590844e-04, 2.9243e-01, 2.3551e-03, - 2DIAGNOSTIC, 33, -5.572578493741e-01, 9.303599899639e-05, 2.9441e-01, 1.9832e-03, - 2DIAGNOSTIC, 34, -5.575899053452e-01, 4.220840475404e-05, 2.9601e-01, 1.5941e-03, - 2DIAGNOSTIC, 35, -5.607787369314e-01, 4.908618293847e-05, 2.9787e-01, 1.8630e-03, - 2DIAGNOSTIC, 36, -5.613557878283e-01, 8.346754204203e-05, 2.9979e-01, 1.9150e-03, - 2DIAGNOSTIC, 37, -5.628718992493e-01, 1.377457433252e-04, 3.0580e-01, 6.0132e-03, - 2DIAGNOSTIC, 38, -5.628716631358e-01, 1.752123860397e-04, 3.0745e-01, 1.6479e-03, - 2DIAGNOSTIC, 39, -5.628721018841e-01, 1.964024118064e-04, 3.0904e-01, 1.5919e-03, - 2DIAGNOSTIC, 40, -5.628728438283e-01, 1.987428993276e-04, 3.1063e-01, 1.5912e-03, - 2DIAGNOSTIC, 41, -5.628740981845e-01, 1.835496524435e-04, 3.1222e-01, 1.5900e-03, - 2DIAGNOSTIC, 42, -5.628762378531e-01, 1.562484558941e-04, 3.1382e-01, 1.5950e-03, - 2DIAGNOSTIC, 43, -5.628798651629e-01, 1.008501855059e-04, 3.1541e-01, 1.5960e-03, - 2DIAGNOSTIC, 44, -5.628859690594e-01, 4.183336351822e-05, 3.1700e-01, 1.5881e-03, - 2DIAGNOSTIC, 45, -5.628962662865e-01, 1.892712849553e-05, 3.1863e-01, 1.6310e-03, - 2DIAGNOSTIC, 46, -5.629136286041e-01, 1.590470384505e-06, 3.2024e-01, 1.6081e-03, - 2DIAGNOSTIC, 47, -5.629428526820e-01, 2.151081007987e-06, 3.2185e-01, 1.6141e-03, - 2DIAGNOSTIC, 48, -5.629919271511e-01, 3.075379494354e-06, 3.2347e-01, 1.6150e-03, - 2DIAGNOSTIC, 49, -5.630737583576e-01, 4.600243886845e-06, 3.2509e-01, 1.6241e-03, - 2DIAGNOSTIC, 50, -5.632087120752e-01, 7.088178904383e-06, 3.2672e-01, 1.6251e-03, - 2DIAGNOSTIC, 51, -5.634256037199e-01, 1.106737133433e-05, 3.2835e-01, 1.6379e-03, - 2DIAGNOSTIC, 52, -5.637712393557e-01, 1.733991270783e-05, 3.3002e-01, 1.6661e-03, - 2DIAGNOSTIC, 53, -5.642868489562e-01, 2.681332883804e-05, 3.3192e-01, 1.8981e-03, - 2DIAGNOSTIC, 54, -5.647470354727e-01, 3.782547230810e-05, 3.3356e-01, 1.6370e-03, - 2DIAGNOSTIC, 55, -5.652520616325e-01, 4.969115727829e-05, 3.3543e-01, 1.8768e-03, - 2DIAGNOSTIC, 56, -5.654866183732e-01, 5.870022778079e-05, 3.3735e-01, 1.9190e-03, - 2DIAGNOSTIC, 57, -5.651473406543e-01, 5.897346486067e-05, 3.3897e-01, 1.6160e-03, - 2DIAGNOSTIC, 58, -5.650228425100e-01, 5.305720381885e-05, 3.4064e-01, 1.6751e-03, - 2DIAGNOSTIC, 59, -5.654437746549e-01, 4.669510782385e-05, 3.4233e-01, 1.6851e-03, - 2DIAGNOSTIC, 60, -5.664969256037e-01, 4.618961788941e-05, 3.4403e-01, 1.7009e-03, - 2DIAGNOSTIC, 61, -5.682393848620e-01, 5.773887667844e-05, 3.4599e-01, 1.9629e-03, - 2DIAGNOSTIC, 62, -5.686707675873e-01, 6.968088024750e-05, 3.4769e-01, 1.6949e-03, - 2DIAGNOSTIC, 63, -5.688552085136e-01, 8.053532069705e-05, 3.4933e-01, 1.6441e-03, - 2DIAGNOSTIC, 64, -5.702955549742e-01, 9.871848250727e-05, 3.5101e-01, 1.6811e-03, - 2DIAGNOSTIC, 65, -5.711915013223e-01, 1.174580006378e-04, 3.5372e-01, 2.7130e-03, - 2DIAGNOSTIC, 66, -5.713781478073e-01, 1.274512259959e-04, 3.5542e-01, 1.6990e-03, - 2DIAGNOSTIC, 67, -5.717967529191e-01, 1.258302530124e-04, 3.5761e-01, 2.1889e-03, - 2DIAGNOSTIC, 68, -5.725838492525e-01, 1.173984473786e-04, 3.5924e-01, 1.6289e-03, - 2DIAGNOSTIC, 69, -5.729032725584e-01, 1.031602975235e-04, 3.6101e-01, 1.7650e-03, - 2DIAGNOSTIC, 70, -5.730776135840e-01, 8.808755518093e-05, 3.6343e-01, 2.4209e-03, - 2DIAGNOSTIC, 71, -5.732010646150e-01, 7.868803072975e-05, 3.6532e-01, 1.8880e-03, - 2DIAGNOSTIC, 72, -5.733522157200e-01, 6.633036341981e-05, 3.6703e-01, 1.7190e-03, - 2DIAGNOSTIC, 73, -5.736358280261e-01, 5.096861152206e-05, 3.6929e-01, 2.2509e-03, - 2DIAGNOSTIC, 74, -5.738065058656e-01, 4.216734264559e-05, 3.7085e-01, 1.5619e-03, - 2DIAGNOSTIC, 75, -5.738728489171e-01, 3.624928192367e-05, 3.7237e-01, 1.5259e-03, - 2DIAGNOSTIC, 76, -5.739624282108e-01, 2.893569289066e-05, 3.7428e-01, 1.9071e-03, - 2DIAGNOSTIC, 77, -5.740477249037e-01, 2.230674473106e-05, 3.7643e-01, 2.1470e-03, - 2DIAGNOSTIC, 78, -5.745521893248e-01, 2.217582667935e-05, 3.7800e-01, 1.5690e-03, - 2DIAGNOSTIC, 79, -5.746476969261e-01, 2.253422146986e-05, 3.7953e-01, 1.5340e-03, - 2DIAGNOSTIC, 80, -5.751282480676e-01, 2.498533578891e-05, 3.8134e-01, 1.8101e-03, - 2DIAGNOSTIC, 81, -5.804219346792e-01, 5.927634488238e-05, 3.8326e-01, 1.9240e-03, - 2DIAGNOSTIC, 82, -5.826117540089e-01, 1.006837875665e-04, 3.8493e-01, 1.6670e-03, - 2DIAGNOSTIC, 83, -5.840658023815e-01, 1.420629086234e-04, 3.8674e-01, 1.8060e-03, - 2DIAGNOSTIC, 84, -5.840561323989e-01, 1.701080695585e-04, 3.8806e-01, 1.3189e-03, - 2DIAGNOSTIC, 85, -5.839616842786e-01, 1.810867923093e-04, 3.8958e-01, 1.5259e-03, - 2DIAGNOSTIC, 86, -5.846593845775e-01, 1.786139950452e-04, 3.9093e-01, 1.3509e-03, - 2DIAGNOSTIC, 87, -5.850294096285e-01, 1.611289649445e-04, 3.9266e-01, 1.7231e-03, - 2DIAGNOSTIC, 88, -5.852312636357e-01, 1.329329643233e-04, 3.9431e-01, 1.6501e-03, - 2DIAGNOSTIC, 89, -5.868244152198e-01, 1.027939171464e-04, 3.9597e-01, 1.6649e-03, - 2DIAGNOSTIC, 90, -5.881748820217e-01, 7.304405545873e-05, 3.9813e-01, 2.1579e-03, - 2DIAGNOSTIC, 91, -5.898986287223e-01, 7.585479693242e-05, 4.0021e-01, 2.0759e-03, - 2DIAGNOSTIC, 92, -5.920111127324e-01, 9.479169448811e-05, 4.0302e-01, 2.8141e-03, - 2DIAGNOSTIC, 93, -5.934433756179e-01, 1.198656695793e-04, 4.0583e-01, 2.8121e-03, - 2DIAGNOSTIC, 94, -5.938810625688e-01, 1.351151300268e-04, 4.0807e-01, 2.2399e-03, - 2DIAGNOSTIC, 95, -5.944034171034e-01, 1.392337264471e-04, 4.1022e-01, 2.1451e-03, - 2DIAGNOSTIC, 96, -5.960108306480e-01, 1.419667990750e-04, 4.1208e-01, 1.8649e-03, - 2DIAGNOSTIC, 97, -5.950337858709e-01, 1.275314708205e-04, 4.1400e-01, 1.9212e-03, - 2DIAGNOSTIC, 98, -5.950818784139e-01, 1.025052160338e-04, 4.1564e-01, 1.6339e-03, - 2DIAGNOSTIC, 99, -5.959935807014e-01, 8.103531757580e-05, 4.1751e-01, 1.8749e-03, - 2DIAGNOSTIC, 100, -5.977116434344e-01, 6.746427822687e-05, 4.1931e-01, 1.8032e-03, - 2DIAGNOSTIC, 101, -5.985687669109e-01, 6.012669319510e-05, 4.2088e-01, 1.5609e-03, - 2DIAGNOSTIC, 102, -5.995005615206e-01, 6.222914191179e-05, 4.2241e-01, 1.5371e-03, - 2DIAGNOSTIC, 103, -6.029626688916e-01, 8.247601004917e-05, 4.2471e-01, 2.2938e-03, - 2DIAGNOSTIC, 104, -6.044781272157e-01, 1.033194230579e-04, 4.2648e-01, 1.7769e-03, - 2DIAGNOSTIC, 105, -6.073768612943e-01, 1.298313860621e-04, 4.2827e-01, 1.7900e-03, - 2DIAGNOSTIC, 106, -6.088667514495e-01, 1.580568321074e-04, 4.2989e-01, 1.6141e-03, - 2DIAGNOSTIC, 107, -6.130565124891e-01, 1.856714518753e-04, 4.3193e-01, 2.0449e-03, - 2DIAGNOSTIC, 108, -6.221310312983e-01, 2.367676777461e-04, 4.3778e-01, 5.8510e-03, - 2DIAGNOSTIC, 109, -6.221310017019e-01, 2.669546191786e-04, 4.3935e-01, 1.5700e-03, - 2DIAGNOSTIC, 110, -6.221311964260e-01, 2.793043206108e-04, 4.4095e-01, 1.5941e-03, - 2DIAGNOSTIC, 111, -6.221315256319e-01, 2.688852798162e-04, 4.4251e-01, 1.5662e-03, - 2DIAGNOSTIC, 112, -6.221320820914e-01, 2.361895677038e-04, 4.4410e-01, 1.5831e-03, - 2DIAGNOSTIC, 113, -6.221330224197e-01, 1.959683041054e-04, 4.4566e-01, 1.5659e-03, - 2DIAGNOSTIC, 114, -6.221346106839e-01, 1.440972045797e-04, 4.4722e-01, 1.5562e-03, - 2DIAGNOSTIC, 115, -6.221372912301e-01, 9.259072189415e-05, 4.4880e-01, 1.5850e-03, - 2DIAGNOSTIC, 116, -6.221418092102e-01, 3.951137964578e-05, 4.5039e-01, 1.5869e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.684115302395e-01, 1.797693134862e+308, 7.0479e-01, 2.5440e-01, - 2DIAGNOSTIC, 2, -4.673400237218e-01, 1.797693134862e+308, 7.0701e-01, 2.2199e-03, - 2DIAGNOSTIC, 3, -4.682754569746e-01, 1.797693134862e+308, 7.0948e-01, 2.4698e-03, - 2DIAGNOSTIC, 4, -4.690586906906e-01, 1.797693134862e+308, 7.1166e-01, 2.1751e-03, - 2DIAGNOSTIC, 5, -4.694045350310e-01, 1.797693134862e+308, 7.1373e-01, 2.0709e-03, - 2DIAGNOSTIC, 6, -4.698114993061e-01, 1.797693134862e+308, 7.1612e-01, 2.3880e-03, - 2DIAGNOSTIC, 7, -4.700454548751e-01, 1.797693134862e+308, 7.1832e-01, 2.2049e-03, - 2DIAGNOSTIC, 8, -4.703208927060e-01, 1.797693134862e+308, 7.2054e-01, 2.2161e-03, - 2DIAGNOSTIC, 9, -4.707400039432e-01, 1.797693134862e+308, 7.2298e-01, 2.4438e-03, - 2DIAGNOSTIC, 10, -4.727244202225e-01, 5.628128515634e-04, 7.2531e-01, 2.3229e-03, - 2DIAGNOSTIC, 11, -4.749829418752e-01, 7.270687661755e-04, 7.2864e-01, 3.3329e-03, - 2DIAGNOSTIC, 12, -4.789963600850e-01, 9.435993204536e-04, 7.3190e-01, 3.2570e-03, - 2DIAGNOSTIC, 13, -4.801241817415e-01, 1.133474838793e-03, 7.3440e-01, 2.5020e-03, - 2DIAGNOSTIC, 14, -4.807802417888e-01, 1.256483805017e-03, 7.3685e-01, 2.4569e-03, - 2DIAGNOSTIC, 15, -4.810721227777e-01, 1.274451882395e-03, 7.3897e-01, 2.1119e-03, - 2DIAGNOSTIC, 16, -4.824635711515e-01, 1.239380141637e-03, 7.4143e-01, 2.4679e-03, - 2DIAGNOSTIC, 17, -4.833149324473e-01, 1.130189475877e-03, 7.4422e-01, 2.7890e-03, - 2DIAGNOSTIC, 18, -4.834450388856e-01, 9.430283576470e-04, 7.4637e-01, 2.1510e-03, - 2DIAGNOSTIC, 19, -4.837349556029e-01, 7.126203112400e-04, 7.4862e-01, 2.2490e-03, - 2DIAGNOSTIC, 20, -4.842377191856e-01, 5.138628044485e-04, 7.5153e-01, 2.9042e-03, - 2DIAGNOSTIC, 21, -4.844436818302e-01, 3.531490588694e-04, 7.5406e-01, 2.5349e-03, - 2DIAGNOSTIC, 22, -4.846636733375e-01, 2.883687963576e-04, 7.5656e-01, 2.4998e-03, - 2DIAGNOSTIC, 23, -4.849719619823e-01, 2.398543181955e-04, 7.5871e-01, 2.1522e-03, - 2DIAGNOSTIC, 24, -4.856821917950e-01, 2.073226868201e-04, 7.6092e-01, 2.2089e-03, - 2DIAGNOSTIC, 25, -4.874624182542e-01, 2.062117181057e-04, 7.6312e-01, 2.1920e-03, - 2DIAGNOSTIC, 26, -4.939060633581e-01, 3.635608396384e-04, 7.6535e-01, 2.2371e-03, - 2DIAGNOSTIC, 27, -5.095687304022e-01, 8.336480874594e-04, 7.6759e-01, 2.2361e-03, - 2DIAGNOSTIC, 28, -5.259113599436e-01, 1.528626455880e-03, 7.7041e-01, 2.8179e-03, - 2DIAGNOSTIC, 29, -5.371568728761e-01, 2.255962443157e-03, 7.7425e-01, 3.8450e-03, - 2DIAGNOSTIC, 30, -5.384944750590e-01, 2.754345725600e-03, 7.7641e-01, 2.1591e-03, - 2DIAGNOSTIC, 31, -5.407097487173e-01, 3.006372451723e-03, 7.7889e-01, 2.4812e-03, - 2DIAGNOSTIC, 32, -5.434058723719e-01, 3.006330041832e-03, 7.8113e-01, 2.2330e-03, - 2DIAGNOSTIC, 33, -5.468985929363e-01, 2.783159693229e-03, 7.8330e-01, 2.1751e-03, - 2DIAGNOSTIC, 34, -5.547418202638e-01, 2.455510085347e-03, 7.8555e-01, 2.2531e-03, - 2DIAGNOSTIC, 35, -5.689930639769e-01, 2.179327153536e-03, 7.8881e-01, 3.2599e-03, - 2DIAGNOSTIC, 36, -5.790929493540e-01, 1.970509761004e-03, 7.9289e-01, 4.0779e-03, - 2DIAGNOSTIC, 37, -5.799838713034e-01, 1.837380549114e-03, 7.9507e-01, 2.1820e-03, - 2DIAGNOSTIC, 38, -5.821717117738e-01, 1.814068662157e-03, 7.9724e-01, 2.1639e-03, - 2DIAGNOSTIC, 39, -5.848208425842e-01, 1.820301373428e-03, 7.9969e-01, 2.4579e-03, - 2DIAGNOSTIC, 40, -5.853466359833e-01, 1.675071153539e-03, 8.0180e-01, 2.1050e-03, - 2DIAGNOSTIC, 41, -5.854837825545e-01, 1.409893646044e-03, 8.0421e-01, 2.4111e-03, - 2DIAGNOSTIC, 42, -5.861858639829e-01, 1.073141529738e-03, 8.0663e-01, 2.4230e-03, - 2DIAGNOSTIC, 43, -5.858975578536e-01, 6.944155106295e-04, 8.0907e-01, 2.4321e-03, - 2DIAGNOSTIC, 44, -5.860562033112e-01, 3.662478194328e-04, 8.1178e-01, 2.7158e-03, - 2DIAGNOSTIC, 45, -5.868157072743e-01, 2.010620298183e-04, 8.1527e-01, 3.4900e-03, - 2DIAGNOSTIC, 46, -5.871954033771e-01, 1.506313353910e-04, 8.1831e-01, 3.0332e-03, - 2DIAGNOSTIC, 47, -5.900291826538e-01, 1.314767236075e-04, 8.2079e-01, 2.4889e-03, - 2DIAGNOSTIC, 48, -5.952782824552e-01, 1.840914937670e-04, 8.2310e-01, 2.3029e-03, - 2DIAGNOSTIC, 49, -6.060098817856e-01, 3.643826988181e-04, 8.2575e-01, 2.6560e-03, - 2DIAGNOSTIC, 50, -6.138683709310e-01, 5.902913316842e-04, 8.3001e-01, 4.2539e-03, - 2DIAGNOSTIC, 51, -6.148223623961e-01, 7.605126265910e-04, 8.3231e-01, 2.3019e-03, - 2DIAGNOSTIC, 52, -6.160156199447e-01, 8.721191321115e-04, 8.3448e-01, 2.1710e-03, - 2DIAGNOSTIC, 53, -6.184804698102e-01, 9.172422039068e-04, 8.3696e-01, 2.4779e-03, - 2DIAGNOSTIC, 54, -6.202421625104e-01, 8.893257109494e-04, 8.3971e-01, 2.7509e-03, - 2DIAGNOSTIC, 55, -6.211931639984e-01, 7.934585982602e-04, 8.4187e-01, 2.1591e-03, - 2DIAGNOSTIC, 56, -6.222118191810e-01, 6.402895827260e-04, 8.4433e-01, 2.4631e-03, - 2DIAGNOSTIC, 57, -6.232067403402e-01, 4.685848600754e-04, 8.4652e-01, 2.1870e-03, - 2DIAGNOSTIC, 58, -6.274446126212e-01, 3.432944070063e-04, 8.4904e-01, 2.5229e-03, - 2DIAGNOSTIC, 59, -6.386363449968e-01, 3.834365992493e-04, 8.5127e-01, 2.2252e-03, - 2DIAGNOSTIC, 60, -6.450270460154e-01, 5.080770483516e-04, 8.5387e-01, 2.6000e-03, - 2DIAGNOSTIC, 61, -6.503743790300e-01, 6.334884619011e-04, 8.5773e-01, 3.8610e-03, - 2DIAGNOSTIC, 62, -6.532872126173e-01, 7.282376756538e-04, 8.5994e-01, 2.2130e-03, - 2DIAGNOSTIC, 63, -6.567777383775e-01, 7.983250476254e-04, 8.6212e-01, 2.1770e-03, - 2DIAGNOSTIC, 64, -6.610224938492e-01, 8.362293653656e-04, 8.6436e-01, 2.2399e-03, - 2DIAGNOSTIC, 65, -6.699128731563e-01, 8.695261078074e-04, 8.6657e-01, 2.2140e-03, - 2DIAGNOSTIC, 66, -6.725252003028e-01, 8.459849866746e-04, 8.6885e-01, 2.2819e-03, - 2DIAGNOSTIC, 67, -6.770913015675e-01, 7.857606111443e-04, 8.7230e-01, 3.4471e-03, - 2DIAGNOSTIC, 68, -6.779014287286e-01, 6.888377885919e-04, 8.7480e-01, 2.4958e-03, - 2DIAGNOSTIC, 69, -6.776010972916e-01, 6.090219115535e-04, 8.7804e-01, 3.2458e-03, - 2DIAGNOSTIC, 70, -6.778243795866e-01, 5.205737752918e-04, 8.8069e-01, 2.6469e-03, - 2DIAGNOSTIC, 71, -6.779850147373e-01, 4.240894389250e-04, 8.8321e-01, 2.5229e-03, - 2DIAGNOSTIC, 72, -6.777813841934e-01, 3.091612501767e-04, 8.8542e-01, 2.2070e-03, - 2DIAGNOSTIC, 73, -6.783956991019e-01, 1.967941730507e-04, 8.8769e-01, 2.2671e-03, - 2DIAGNOSTIC, 74, -6.788766511995e-01, 1.002242047909e-04, 8.8990e-01, 2.2109e-03, - 2DIAGNOSTIC, 75, -6.790559599864e-01, 5.774695882177e-05, 8.9254e-01, 2.6450e-03, - 2DIAGNOSTIC, 76, -6.789975646555e-01, 2.715002939208e-05, 8.9485e-01, 2.3129e-03, - 2DIAGNOSTIC, 77, -6.789945215503e-01, 2.447120944922e-05, 8.9737e-01, 2.5120e-03, - 2DIAGNOSTIC, 78, -6.791595384393e-01, 2.582587968388e-05, 8.9987e-01, 2.5048e-03, - 2DIAGNOSTIC, 79, -6.789413166990e-01, 2.128038174842e-05, 9.0232e-01, 2.4540e-03, - 2DIAGNOSTIC, 80, -6.788721408916e-01, 1.586088048073e-05, 9.0448e-01, 2.1579e-03, - 2DIAGNOSTIC, 81, -6.790046711674e-01, 1.105055826584e-05, 9.0663e-01, 2.1510e-03, - 2DIAGNOSTIC, 82, -6.791485987951e-01, 4.893542063828e-06, 9.0877e-01, 2.1410e-03, - 2DIAGNOSTIC, 83, -6.790640124708e-01, 1.520205047290e-06, 9.1093e-01, 2.1529e-03, - 2DIAGNOSTIC, 84, -6.796031705271e-01, 4.130830461142e-06, 9.1337e-01, 2.4450e-03, - 2DIAGNOSTIC, 85, -6.809037970177e-01, 1.480822641886e-05, 9.1667e-01, 3.2971e-03, - 2DIAGNOSTIC, 86, -6.808547936821e-01, 2.299114544391e-05, 9.1885e-01, 2.1820e-03, - 2DIAGNOSTIC, 87, -6.808988946283e-01, 2.909051751543e-05, 9.2102e-01, 2.1720e-03, - 2DIAGNOSTIC, 88, -6.811169224222e-01, 3.452720066021e-05, 9.2346e-01, 2.4331e-03, - 2DIAGNOSTIC, 89, -6.811939150984e-01, 3.567862848870e-05, 9.2582e-01, 2.3658e-03, - 2DIAGNOSTIC, 90, -6.812667916014e-01, 3.327487977325e-05, 9.3316e-01, 7.3419e-03, - 2DIAGNOSTIC, 91, -6.812667664677e-01, 2.847499310591e-05, 9.3536e-01, 2.1920e-03, - 2DIAGNOSTIC, 92, -6.812668018807e-01, 2.200552281363e-05, 9.3753e-01, 2.1758e-03, - 2DIAGNOSTIC, 93, -6.812668617530e-01, 1.315272618260e-05, 9.3972e-01, 2.1920e-03, - 2DIAGNOSTIC, 94, -6.812669629486e-01, 5.850367991373e-06, 9.4188e-01, 2.1570e-03, - 2DIAGNOSTIC, 95, -6.812671339328e-01, 4.814268099507e-06, 9.4404e-01, 2.1579e-03, - 2DIAGNOSTIC, 96, -6.812674226759e-01, 3.142851294479e-06, 9.4626e-01, 2.2211e-03, - 2DIAGNOSTIC, 97, -6.812679099481e-01, 1.444483656649e-06, 9.4848e-01, 2.2211e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.548058117572e-01, 1.797693134862e+308, 1.2272e+00, 2.7872e-01, - 2DIAGNOSTIC, 2, -5.567990252618e-01, 1.797693134862e+308, 1.2405e+00, 1.3335e-02, - 2DIAGNOSTIC, 3, -5.591485312675e-01, 1.797693134862e+308, 1.2535e+00, 1.2956e-02, - 2DIAGNOSTIC, 4, -5.610063624001e-01, 1.797693134862e+308, 1.2681e+00, 1.4589e-02, - 2DIAGNOSTIC, 5, -5.622271066828e-01, 1.797693134862e+308, 1.2835e+00, 1.5391e-02, - 2DIAGNOSTIC, 6, -5.624875052550e-01, 1.797693134862e+308, 1.2987e+00, 1.5214e-02, - 2DIAGNOSTIC, 7, -5.625367503364e-01, 1.797693134862e+308, 1.3134e+00, 1.4760e-02, - 2DIAGNOSTIC, 8, -5.625848735764e-01, 1.797693134862e+308, 1.3264e+00, 1.2977e-02, - 2DIAGNOSTIC, 9, -5.627307354342e-01, 1.797693134862e+308, 1.3457e+00, 1.9264e-02, - 2DIAGNOSTIC, 10, -5.627901701841e-01, 8.312375607285e-04, 1.3612e+00, 1.5514e-02, - 2DIAGNOSTIC, 11, -5.627508993583e-01, 4.874507764633e-04, 1.3770e+00, 1.5751e-02, - 2DIAGNOSTIC, 12, -5.627466986031e-01, 2.407005061795e-04, 1.3903e+00, 1.3303e-02, - 2DIAGNOSTIC, 13, -5.627592991856e-01, 1.011785886037e-04, 1.4057e+00, 1.5448e-02, - 2DIAGNOSTIC, 14, -5.627817412924e-01, 3.941484097493e-05, 1.4200e+00, 1.4319e-02, - 2DIAGNOSTIC, 15, -5.627794288805e-01, 2.336774277091e-05, 1.4368e+00, 1.6825e-02, - 2DIAGNOSTIC, 16, -5.627861595550e-01, 1.591494279025e-05, 1.4516e+00, 1.4728e-02, - 2DIAGNOSTIC, 17, -5.627762406529e-01, 9.279697958942e-06, 1.4651e+00, 1.3563e-02, - 2DIAGNOSTIC, 18, -5.627696151273e-01, 3.751748690654e-06, 1.4781e+00, 1.2918e-02, - 2DIAGNOSTIC, 19, -5.628128673576e-01, 3.593406151636e-06, 1.4928e+00, 1.4699e-02, - 2DIAGNOSTIC, 20, -5.628410524609e-01, 5.482619681779e-06, 1.5057e+00, 1.2908e-02, - 2DIAGNOSTIC, 21, -5.628793346866e-01, 6.809718844744e-06, 1.5183e+00, 1.2672e-02, - 2DIAGNOSTIC, 22, -5.629176770582e-01, 8.306555915771e-06, 1.5341e+00, 1.5736e-02, - 2DIAGNOSTIC, 23, -5.630122469320e-01, 1.137153588008e-05, 1.5468e+00, 1.2747e-02, - 2DIAGNOSTIC, 24, -5.630819637686e-01, 1.513507448400e-05, 1.5594e+00, 1.2624e-02, - 2DIAGNOSTIC, 25, -5.633300302303e-01, 2.224220653420e-05, 1.5880e+00, 2.8563e-02, - 2DIAGNOSTIC, 26, -5.633319791986e-01, 2.690696031624e-05, 1.6008e+00, 1.2805e-02, - 2DIAGNOSTIC, 27, -5.633033422094e-01, 2.816136836419e-05, 1.6158e+00, 1.4971e-02, - 2DIAGNOSTIC, 28, -5.633185912887e-01, 2.698406905898e-05, 1.6308e+00, 1.5047e-02, - 2DIAGNOSTIC, 29, -5.633043008107e-01, 2.390109506253e-05, 1.6438e+00, 1.2995e-02, - 2DIAGNOSTIC, 30, -5.633056124867e-01, 1.930754842478e-05, 1.6567e+00, 1.2852e-02, - 2DIAGNOSTIC, 31, -5.633233806409e-01, 1.420370432242e-05, 1.6701e+00, 1.3471e-02, - 2DIAGNOSTIC, 32, -5.633441601089e-01, 9.134324012582e-06, 1.6856e+00, 1.5479e-02, - 2DIAGNOSTIC, 33, -5.633422304484e-01, 5.028413916211e-06, 1.7001e+00, 1.4449e-02, - 2DIAGNOSTIC, 34, -5.633339450163e-01, 1.591067714007e-06, 1.7127e+00, 1.2606e-02, - 2DIAGNOSTIC, 35, -5.634042183238e-01, 2.890100199396e-06, 1.7254e+00, 1.2747e-02, - 2DIAGNOSTIC, 36, -5.634512493665e-01, 4.591503673265e-06, 1.7455e+00, 2.0103e-02, - 2DIAGNOSTIC, 37, -5.634379603336e-01, 5.253187330936e-06, 1.7620e+00, 1.6483e-02, - 2DIAGNOSTIC, 38, -5.634233830448e-01, 5.507792169873e-06, 1.7745e+00, 1.2534e-02, - 2DIAGNOSTIC, 39, -5.634466915081e-01, 5.439550301051e-06, 1.7869e+00, 1.2343e-02, - 2DIAGNOSTIC, 40, -5.634357537742e-01, 4.778457439271e-06, 1.8033e+00, 1.6367e-02, - 2DIAGNOSTIC, 41, -5.634681761279e-01, 4.370821471339e-06, 1.8182e+00, 1.4909e-02, - 2DIAGNOSTIC, 42, -5.634554833713e-01, 3.743085850012e-06, 1.8310e+00, 1.2828e-02, - 2DIAGNOSTIC, 43, -5.634121746701e-01, 2.358961834422e-06, 1.8437e+00, 1.2719e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.849582455886e-01, 1.797693134862e+308, 2.2719e+00, 4.2823e-01, - 2DIAGNOSTIC, 2, -4.853843506546e-01, 1.797693134862e+308, 2.3570e+00, 8.5109e-02, - 2DIAGNOSTIC, 3, -4.858285944546e-01, 1.797693134862e+308, 2.4398e+00, 8.2781e-02, - 2DIAGNOSTIC, 4, -4.860607333656e-01, 1.797693134862e+308, 2.5220e+00, 8.2145e-02, - 2DIAGNOSTIC, 5, -4.864008558651e-01, 1.797693134862e+308, 2.6166e+00, 9.4598e-02, - 2DIAGNOSTIC, 6, -4.865010399932e-01, 1.797693134862e+308, 2.6914e+00, 7.4834e-02, - 2DIAGNOSTIC, 7, -4.865476229347e-01, 1.797693134862e+308, 2.7769e+00, 8.5536e-02, - 2DIAGNOSTIC, 8, -4.865683745152e-01, 1.797693134862e+308, 2.8660e+00, 8.9102e-02, - 2DIAGNOSTIC, 9, -4.865889582843e-01, 1.797693134862e+308, 2.9416e+00, 7.5512e-02, - 2DIAGNOSTIC, 10, -4.866062778597e-01, 2.056723366905e-04, 3.0162e+00, 7.4691e-02, - 2DIAGNOSTIC, 11, -4.866790871806e-01, 1.320768307907e-04, 3.1246e+00, 1.0837e-01, - 2DIAGNOSTIC, 12, -4.867343634148e-01, 8.227401474989e-05, 3.2244e+00, 9.9795e-02, - 2DIAGNOSTIC, 13, -4.867382188496e-01, 5.301030241625e-05, 3.3689e+00, 1.4446e-01, - 2DIAGNOSTIC, 14, -4.867539393815e-01, 3.341256934121e-05, 3.4647e+00, 9.5836e-02, - 2DIAGNOSTIC, 15, -4.867599345740e-01, 2.698933252337e-05, 3.5653e+00, 1.0055e-01, - 2DIAGNOSTIC, 16, -4.867672948185e-01, 2.293787569849e-05, 3.6630e+00, 9.7699e-02, - 2DIAGNOSTIC, 17, -4.867705152908e-01, 1.910672825908e-05, 3.7469e+00, 8.3989e-02, - 2DIAGNOSTIC, 18, -4.867873235784e-01, 1.534716658366e-05, 3.8423e+00, 9.5316e-02, - 2DIAGNOSTIC, 19, -4.867942396644e-01, 1.159129106787e-05, 3.9364e+00, 9.4097e-02, - 2DIAGNOSTIC, 20, -4.867886112324e-01, 7.587899932771e-06, 4.0202e+00, 8.3812e-02, - 2DIAGNOSTIC, 21, -4.867916041032e-01, 5.490636903520e-06, 4.0949e+00, 7.4698e-02, - 2DIAGNOSTIC, 22, -4.868054617466e-01, 5.048638810047e-06, 4.2275e+00, 1.3259e-01, - 2DIAGNOSTIC, 23, -4.868046891135e-01, 4.360204790742e-06, 4.3130e+00, 8.5552e-02, - 2DIAGNOSTIC, 24, -4.868040068386e-01, 3.817411626493e-06, 4.3994e+00, 8.6440e-02, - 2DIAGNOSTIC, 25, -4.867999688495e-01, 3.139124987665e-06, 4.4744e+00, 7.5003e-02, - 2DIAGNOSTIC, 26, -4.867962650765e-01, 2.425008883200e-06, 4.5603e+00, 8.5868e-02, - 2DIAGNOSTIC, 27, -4.867986614354e-01, 1.757375124513e-06, 4.6467e+00, 8.6428e-02, - 2DIAGNOSTIC, 28, -4.867981265827e-01, 1.413344589071e-06, 4.7331e+00, 8.6330e-02, - 2DIAGNOSTIC, 29, -4.867961459527e-01, 1.175134599185e-06, 4.8425e+00, 1.0947e-01, - Elapsed time (stage 0): 4.9895e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.695322119398e-01, 1.797693134862e+308, 2.0236e-01, 2.0236e-01, - 2DIAGNOSTIC, 2, -7.723107932629e-01, 1.797693134862e+308, 2.0365e-01, 1.2901e-03, - 2DIAGNOSTIC, 3, -7.761694902887e-01, 1.797693134862e+308, 2.0487e-01, 1.2159e-03, - 2DIAGNOSTIC, 4, -7.830829984199e-01, 1.797693134862e+308, 2.0609e-01, 1.2231e-03, - 2DIAGNOSTIC, 5, -7.925353471734e-01, 1.797693134862e+308, 2.0733e-01, 1.2391e-03, - 2DIAGNOSTIC, 6, -8.078367969183e-01, 1.797693134862e+308, 2.0857e-01, 1.2441e-03, - 2DIAGNOSTIC, 7, -8.213972044370e-01, 1.797693134862e+308, 2.1022e-01, 1.6510e-03, - 2DIAGNOSTIC, 8, -8.394849166978e-01, 1.797693134862e+308, 2.1145e-01, 1.2281e-03, - 2DIAGNOSTIC, 9, -8.414572596129e-01, 1.797693134862e+308, 2.1299e-01, 1.5390e-03, - 2DIAGNOSTIC, 10, -8.500901075718e-01, 7.266820642549e-03, 2.1482e-01, 1.8308e-03, - 2DIAGNOSTIC, 11, -8.676991491811e-01, 7.174040339099e-03, 2.1674e-01, 1.9190e-03, - 2DIAGNOSTIC, 12, -8.750227928787e-01, 6.729427274644e-03, 2.1855e-01, 1.8041e-03, - 2DIAGNOSTIC, 13, -8.864462363544e-01, 6.152649628228e-03, 2.2037e-01, 1.8270e-03, - 2DIAGNOSTIC, 14, -8.928698009510e-01, 5.434598720875e-03, 2.2260e-01, 2.2311e-03, - 2DIAGNOSTIC, 15, -8.961791576412e-01, 4.612862414372e-03, 2.2479e-01, 2.1889e-03, - 2DIAGNOSTIC, 16, -8.974075954861e-01, 3.824674561175e-03, 2.2701e-01, 2.2180e-03, - 2DIAGNOSTIC, 17, -8.995422216114e-01, 3.087941480924e-03, 2.2917e-01, 2.1620e-03, - 2DIAGNOSTIC, 18, -8.987339211706e-01, 2.480367979482e-03, 2.3124e-01, 2.0690e-03, - 2DIAGNOSTIC, 19, -8.991308496417e-01, 1.753573749771e-03, 2.3291e-01, 1.6720e-03, - 2DIAGNOSTIC, 20, -8.997509149960e-01, 1.091457173245e-03, 2.3450e-01, 1.5879e-03, - 2DIAGNOSTIC, 21, -8.992855192333e-01, 6.669767818523e-04, 2.3593e-01, 1.4310e-03, - 2DIAGNOSTIC, 22, -8.995994956045e-01, 3.337586971316e-04, 2.3739e-01, 1.4610e-03, - 2DIAGNOSTIC, 23, -9.013612887657e-01, 1.887561908270e-04, 2.3910e-01, 1.7061e-03, - 2DIAGNOSTIC, 24, -9.037011811857e-01, 1.585605211189e-04, 2.4073e-01, 1.6341e-03, - 2DIAGNOSTIC, 25, -9.038483423186e-01, 1.609533861918e-04, 2.4238e-01, 1.6470e-03, - 2DIAGNOSTIC, 26, -9.039402917831e-01, 1.648442708553e-04, 2.4398e-01, 1.5960e-03, - 2DIAGNOSTIC, 27, -9.050084152811e-01, 1.929380989363e-04, 2.4565e-01, 1.6751e-03, - 2DIAGNOSTIC, 28, -9.092720045552e-01, 2.405150151625e-04, 2.4734e-01, 1.6849e-03, - 2DIAGNOSTIC, 29, -9.105075226072e-01, 2.785995101337e-04, 2.4881e-01, 1.4701e-03, - 2DIAGNOSTIC, 30, -9.109906354750e-01, 3.006153678361e-04, 2.5049e-01, 1.6840e-03, - 2DIAGNOSTIC, 31, -9.112382852731e-01, 2.917475801141e-04, 2.5194e-01, 1.4479e-03, - 2DIAGNOSTIC, 32, -9.103758609240e-01, 2.500053847028e-04, 2.5354e-01, 1.6050e-03, - 2DIAGNOSTIC, 33, -9.106824421761e-01, 2.066966802079e-04, 2.5599e-01, 2.4490e-03, - 2DIAGNOSTIC, 34, -9.106966031808e-01, 1.687267964095e-04, 2.5752e-01, 1.5321e-03, - 2DIAGNOSTIC, 35, -9.107562837508e-01, 1.195366622480e-04, 2.5901e-01, 1.4861e-03, - 2DIAGNOSTIC, 36, -9.107935315580e-01, 6.347112289894e-05, 2.6044e-01, 1.4300e-03, - 2DIAGNOSTIC, 37, -9.108345954795e-01, 1.358033321457e-05, 2.6194e-01, 1.4958e-03, - 2DIAGNOSTIC, 38, -9.109243335826e-01, 2.133325152698e-06, 2.6362e-01, 1.6880e-03, - 2DIAGNOSTIC, 39, -9.109815356169e-01, 1.682084756555e-06, 2.6508e-01, 1.4520e-03, - 2DIAGNOSTIC, 40, -9.110180215317e-01, 5.269305270932e-06, 2.6680e-01, 1.7190e-03, - 2DIAGNOSTIC, 41, -9.110281239309e-01, 1.051126820241e-05, 2.6867e-01, 1.8768e-03, - 2DIAGNOSTIC, 42, -9.110363933360e-01, 7.938175973617e-06, 2.7042e-01, 1.7488e-03, - 2DIAGNOSTIC, 43, -9.110414638662e-01, 7.142205582442e-06, 2.7194e-01, 1.5218e-03, - 2DIAGNOSTIC, 44, -9.110796083992e-01, 6.143994551597e-06, 2.7384e-01, 1.8940e-03, - 2DIAGNOSTIC, 45, -9.110883361929e-01, 5.159643655182e-06, 2.7555e-01, 1.7099e-03, - 2DIAGNOSTIC, 46, -9.110885961247e-01, 4.064137415213e-06, 2.7744e-01, 1.8971e-03, - 2DIAGNOSTIC, 47, -9.110886900254e-01, 2.972855893797e-06, 2.7891e-01, 1.4660e-03, - 2DIAGNOSTIC, 48, -9.110888296787e-01, 2.305330081789e-06, 2.8045e-01, 1.5380e-03, - 2DIAGNOSTIC, 49, -9.110894687769e-01, 1.880291509892e-06, 2.8200e-01, 1.5540e-03, - 2DIAGNOSTIC, 50, -9.110913252299e-01, 1.600417730910e-06, 2.8345e-01, 1.4470e-03, - 2DIAGNOSTIC, 51, -9.110952345399e-01, 1.331761893111e-06, 2.8477e-01, 1.3258e-03, - 2DIAGNOSTIC, 52, -9.111000792330e-01, 1.090838372075e-06, 2.8642e-01, 1.6491e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.716194881694e-01, 1.797693134862e+308, 4.9085e-01, 2.0443e-01, - 2DIAGNOSTIC, 2, -7.712253415736e-01, 1.797693134862e+308, 4.9350e-01, 2.6460e-03, - 2DIAGNOSTIC, 3, -7.730330636338e-01, 1.797693134862e+308, 4.9609e-01, 2.5890e-03, - 2DIAGNOSTIC, 4, -7.753849460540e-01, 1.797693134862e+308, 4.9862e-01, 2.5339e-03, - 2DIAGNOSTIC, 5, -7.776342386814e-01, 1.797693134862e+308, 5.0090e-01, 2.2781e-03, - 2DIAGNOSTIC, 6, -7.808569230888e-01, 1.797693134862e+308, 5.0320e-01, 2.2972e-03, - 2DIAGNOSTIC, 7, -7.839625976479e-01, 1.797693134862e+308, 5.0587e-01, 2.6691e-03, - 2DIAGNOSTIC, 8, -7.847739996415e-01, 1.797693134862e+308, 5.0878e-01, 2.9171e-03, - 2DIAGNOSTIC, 9, -7.849314632040e-01, 1.797693134862e+308, 5.1108e-01, 2.2981e-03, - 2DIAGNOSTIC, 10, -7.850415237968e-01, 1.396277618026e-03, 5.1415e-01, 3.0661e-03, - 2DIAGNOSTIC, 11, -7.851457468910e-01, 1.161804546621e-03, 5.1726e-01, 3.1168e-03, - 2DIAGNOSTIC, 12, -7.857265236375e-01, 8.668163782129e-04, 5.2046e-01, 3.1931e-03, - 2DIAGNOSTIC, 13, -7.863379355356e-01, 6.065108083653e-04, 5.2304e-01, 2.5778e-03, - 2DIAGNOSTIC, 14, -7.864629659170e-01, 3.934702371113e-04, 5.2571e-01, 2.6789e-03, - 2DIAGNOSTIC, 15, -7.863861298884e-01, 2.252594421370e-04, 5.2813e-01, 2.4209e-03, - 2DIAGNOSTIC, 16, -7.865489321403e-01, 1.331634162182e-04, 5.3065e-01, 2.5182e-03, - 2DIAGNOSTIC, 17, -7.865282988704e-01, 1.051018752747e-04, 5.3343e-01, 2.7721e-03, - 2DIAGNOSTIC, 18, -7.876155287496e-01, 1.086982941357e-04, 5.3642e-01, 2.9922e-03, - 2DIAGNOSTIC, 19, -7.871252347405e-01, 9.516773927942e-05, 5.3896e-01, 2.5382e-03, - 2DIAGNOSTIC, 20, -7.872182594052e-01, 7.874436966778e-05, 5.4151e-01, 2.5561e-03, - 2DIAGNOSTIC, 21, -7.873620415785e-01, 6.098766496818e-05, 5.4378e-01, 2.2662e-03, - 2DIAGNOSTIC, 22, -7.875265582112e-01, 5.105938002696e-05, 5.4713e-01, 3.3541e-03, - 2DIAGNOSTIC, 23, -7.875722017272e-01, 4.741306578208e-05, 5.4983e-01, 2.6982e-03, - 2DIAGNOSTIC, 24, -7.874140522534e-01, 3.942028309310e-05, 5.5220e-01, 2.3720e-03, - 2DIAGNOSTIC, 25, -7.872651899952e-01, 2.551469970122e-05, 5.5482e-01, 2.6190e-03, - 2DIAGNOSTIC, 26, -7.872867410974e-01, 1.305101094091e-05, 5.5709e-01, 2.2702e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.717235017290e-01, 1.797693134862e+308, 8.0073e-01, 2.4364e-01, - 2DIAGNOSTIC, 2, -6.728334581172e-01, 1.797693134862e+308, 8.1578e-01, 1.5049e-02, - 2DIAGNOSTIC, 3, -6.741357405789e-01, 1.797693134862e+308, 8.3015e-01, 1.4371e-02, - 2DIAGNOSTIC, 4, -6.752027515868e-01, 1.797693134862e+308, 8.4465e-01, 1.4506e-02, - 2DIAGNOSTIC, 5, -6.763633937265e-01, 1.797693134862e+308, 8.5916e-01, 1.4506e-02, - 2DIAGNOSTIC, 6, -6.778323912958e-01, 1.797693134862e+308, 8.7335e-01, 1.4191e-02, - 2DIAGNOSTIC, 7, -6.795319556980e-01, 1.797693134862e+308, 8.8969e-01, 1.6343e-02, - 2DIAGNOSTIC, 8, -6.818332600270e-01, 1.797693134862e+308, 9.1397e-01, 2.4273e-02, - 2DIAGNOSTIC, 9, -6.820416512004e-01, 1.797693134862e+308, 9.3205e-01, 1.8083e-02, - 2DIAGNOSTIC, 10, -6.820815735835e-01, 1.097081248334e-03, 9.4828e-01, 1.6231e-02, - 2DIAGNOSTIC, 11, -6.820966513005e-01, 9.117045722420e-04, 9.6452e-01, 1.6236e-02, - 2DIAGNOSTIC, 12, -6.820655804491e-01, 7.120732125425e-04, 9.8215e-01, 1.7635e-02, - 2DIAGNOSTIC, 13, -6.820337536634e-01, 5.190454069978e-04, 9.9595e-01, 1.3796e-02, - 2DIAGNOSTIC, 14, -6.820526631573e-01, 3.393242206763e-04, 1.0112e+00, 1.5289e-02, - 2DIAGNOSTIC, 15, -6.820791792395e-01, 1.864085592406e-04, 1.0276e+00, 1.6350e-02, - 2DIAGNOSTIC, 16, -6.820980704910e-01, 7.421864635095e-05, 1.0438e+00, 1.6181e-02, - 2DIAGNOSTIC, 17, -6.820930013791e-01, 8.808104143193e-06, 1.0574e+00, 1.3645e-02, - 2DIAGNOSTIC, 18, -6.821785822131e-01, 5.431227996004e-06, 1.0777e+00, 2.0259e-02, - 2DIAGNOSTIC, 19, -6.821763884230e-01, 6.523494368811e-06, 1.0928e+00, 1.5159e-02, - 2DIAGNOSTIC, 20, -6.821517536335e-01, 7.356913876197e-06, 1.1081e+00, 1.5261e-02, - 2DIAGNOSTIC, 21, -6.821229740184e-01, 7.350957880743e-06, 1.1214e+00, 1.3337e-02, - 2DIAGNOSTIC, 22, -6.821171981507e-01, 6.134483827185e-06, 1.1351e+00, 1.3692e-02, - 2DIAGNOSTIC, 23, -6.821373642955e-01, 4.339261846974e-06, 1.1485e+00, 1.3359e-02, - 2DIAGNOSTIC, 24, -6.821704444864e-01, 3.289113216759e-06, 1.1636e+00, 1.5160e-02, - 2DIAGNOSTIC, 25, -6.822158996265e-01, 3.350850334351e-06, 1.1799e+00, 1.6287e-02, - 2DIAGNOSTIC, 26, -6.823526219781e-01, 5.731800242013e-06, 1.1952e+00, 1.5281e-02, - 2DIAGNOSTIC, 27, -6.824746832895e-01, 9.235213178575e-06, 1.2088e+00, 1.3582e-02, - 2DIAGNOSTIC, 28, -6.827910109229e-01, 1.768933974662e-05, 1.2247e+00, 1.5886e-02, - 2DIAGNOSTIC, 29, -6.833216338691e-01, 3.151951642873e-05, 1.2424e+00, 1.7755e-02, - 2DIAGNOSTIC, 30, -6.837322208508e-01, 4.678393820237e-05, 1.2592e+00, 1.6754e-02, - 2DIAGNOSTIC, 31, -6.840771231629e-01, 6.095880546220e-05, 1.2753e+00, 1.6104e-02, - 2DIAGNOSTIC, 32, -6.848900736638e-01, 7.909818240721e-05, 1.2947e+00, 1.9456e-02, - 2DIAGNOSTIC, 33, -6.851979110464e-01, 9.263980240967e-05, 1.3081e+00, 1.3367e-02, - 2DIAGNOSTIC, 34, -6.855616294499e-01, 1.015127072286e-04, 1.3256e+00, 1.7472e-02, - 2DIAGNOSTIC, 35, -6.855829318931e-01, 1.011050228905e-04, 1.3391e+00, 1.3535e-02, - 2DIAGNOSTIC, 36, -6.858405247992e-01, 9.584612414741e-05, 1.3587e+00, 1.9560e-02, - 2DIAGNOSTIC, 37, -6.858476322820e-01, 8.314325222048e-05, 1.3789e+00, 2.0206e-02, - 2DIAGNOSTIC, 38, -6.858334826499e-01, 6.647282544395e-05, 1.3952e+00, 1.6280e-02, - 2DIAGNOSTIC, 39, -6.858367538581e-01, 5.014681826011e-05, 1.4094e+00, 1.4264e-02, - 2DIAGNOSTIC, 40, -6.858052058661e-01, 3.390983947240e-05, 1.4254e+00, 1.5978e-02, - 2DIAGNOSTIC, 41, -6.857908944957e-01, 1.849357197544e-05, 1.4389e+00, 1.3506e-02, - 2DIAGNOSTIC, 42, -6.857786687177e-01, 1.001854916976e-05, 1.4522e+00, 1.3304e-02, - 2DIAGNOSTIC, 43, -6.857871276460e-01, 4.061045656593e-06, 1.4654e+00, 1.3213e-02, - 2DIAGNOSTIC, 44, -6.857794709666e-01, 1.449854654469e-06, 1.4807e+00, 1.5249e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.723575738022e-01, 1.797693134862e+308, 1.9114e+00, 4.3070e-01, - 2DIAGNOSTIC, 2, -5.730926069795e-01, 1.797693134862e+308, 2.0054e+00, 9.4042e-02, - 2DIAGNOSTIC, 3, -5.736832949130e-01, 1.797693134862e+308, 2.1009e+00, 9.5505e-02, - 2DIAGNOSTIC, 4, -5.744034240015e-01, 1.797693134862e+308, 2.1962e+00, 9.5238e-02, - 2DIAGNOSTIC, 5, -5.751505814535e-01, 1.797693134862e+308, 2.2901e+00, 9.3952e-02, - 2DIAGNOSTIC, 6, -5.758215286960e-01, 1.797693134862e+308, 2.4158e+00, 1.2563e-01, - 2DIAGNOSTIC, 7, -5.760034380350e-01, 1.797693134862e+308, 2.5173e+00, 1.0153e-01, - 2DIAGNOSTIC, 8, -5.762195400260e-01, 1.797693134862e+308, 2.6265e+00, 1.0919e-01, - 2DIAGNOSTIC, 9, -5.768066424998e-01, 1.797693134862e+308, 2.7106e+00, 8.4122e-02, - 2DIAGNOSTIC, 10, -5.769239226298e-01, 5.196354699994e-04, 2.7963e+00, 8.5679e-02, - 2DIAGNOSTIC, 11, -5.774296451005e-01, 4.243890576347e-04, 2.9107e+00, 1.1440e-01, - 2DIAGNOSTIC, 12, -5.781992128705e-01, 3.689303732925e-04, 3.0190e+00, 1.0833e-01, - 2DIAGNOSTIC, 13, -5.790006579016e-01, 3.410022310493e-04, 3.1295e+00, 1.1046e-01, - 2DIAGNOSTIC, 14, -5.797836889625e-01, 3.383413465084e-04, 3.2394e+00, 1.0999e-01, - 2DIAGNOSTIC, 15, -5.800361936096e-01, 3.375747409185e-04, 3.3383e+00, 9.8803e-02, - 2DIAGNOSTIC, 16, -5.802501148695e-01, 3.337294558541e-04, 3.4255e+00, 8.7203e-02, - 2DIAGNOSTIC, 17, -5.806544967517e-01, 3.166342615469e-04, 3.5284e+00, 1.0294e-01, - 2DIAGNOSTIC, 18, -5.809534120621e-01, 2.856088223064e-04, 3.6392e+00, 1.1081e-01, - 2DIAGNOSTIC, 19, -5.811402511818e-01, 2.515749721282e-04, 3.7266e+00, 8.7396e-02, - 2DIAGNOSTIC, 20, -5.823250873775e-01, 2.298873839443e-04, 3.8444e+00, 1.1780e-01, - 2DIAGNOSTIC, 21, -5.830098932768e-01, 2.161385774034e-04, 3.9384e+00, 9.4005e-02, - 2DIAGNOSTIC, 22, -5.831629232121e-01, 2.037812722985e-04, 4.0453e+00, 1.0685e-01, - 2DIAGNOSTIC, 23, -5.833196403400e-01, 1.940583465237e-04, 4.1805e+00, 1.3525e-01, - 2DIAGNOSTIC, 24, -5.833491792924e-01, 1.837683027231e-04, 4.2856e+00, 1.0510e-01, - 2DIAGNOSTIC, 25, -5.833601065393e-01, 1.620418800968e-04, 4.4071e+00, 1.2154e-01, - 2DIAGNOSTIC, 26, -5.833614413030e-01, 1.305921475585e-04, 4.5166e+00, 1.0946e-01, - 2DIAGNOSTIC, 27, -5.833553846103e-01, 9.669242600604e-05, 4.6786e+00, 1.6203e-01, - 2DIAGNOSTIC, 28, -5.833562209027e-01, 6.177958614034e-05, 4.7865e+00, 1.0791e-01, - 2DIAGNOSTIC, 29, -5.833515240488e-01, 2.623432161139e-05, 4.8892e+00, 1.0261e-01, - 2DIAGNOSTIC, 30, -5.833525121749e-01, 9.833716337823e-06, 4.9982e+00, 1.0909e-01, - 2DIAGNOSTIC, 31, -5.833497056178e-01, 4.423264197785e-06, 5.1050e+00, 1.0673e-01, - 2DIAGNOSTIC, 32, -5.833489813751e-01, 1.306433326687e-06, 5.2136e+00, 1.0862e-01, - Elapsed time (stage 1): 5.3435e+00 - - -Total elapsed time: 1.0336e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:21:09 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:21:09 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5614c1ace4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5614c1ad3fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9dbb5f7010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5614c1acf850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5614c1accf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9db7f38010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5614c1ae6b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5614c1ad3550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9db4879010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5614c1aebd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5614c1ae9c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9db11ba010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x5614c1aedf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5614c1aec3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9dadafb010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5614c1aee540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.551, 65.2272, -108.821] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5614c1aee4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9daa43c010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.168481712603e-01, 1.797693134862e+308, 2.2156e-01, 2.2155e-01, - 2DIAGNOSTIC, 2, -6.198580345654e-01, 1.797693134862e+308, 2.2385e-01, 2.2900e-03, - 2DIAGNOSTIC, 3, -6.242573475754e-01, 1.797693134862e+308, 2.2613e-01, 2.2800e-03, - 2DIAGNOSTIC, 4, -6.314257709979e-01, 1.797693134862e+308, 2.2843e-01, 2.3050e-03, - 2DIAGNOSTIC, 5, -6.377520806514e-01, 1.797693134862e+308, 2.3046e-01, 2.0299e-03, - 2DIAGNOSTIC, 6, -6.410322711883e-01, 1.797693134862e+308, 2.3241e-01, 1.9481e-03, - 2DIAGNOSTIC, 7, -6.426417633691e-01, 1.797693134862e+308, 2.3439e-01, 1.9760e-03, - 2DIAGNOSTIC, 8, -6.436073963411e-01, 1.797693134862e+308, 2.3659e-01, 2.2092e-03, - 2DIAGNOSTIC, 9, -6.444444249179e-01, 1.797693134862e+308, 2.3962e-01, 3.0231e-03, - 2DIAGNOSTIC, 10, -6.452141796838e-01, 3.102237490753e-03, 2.4178e-01, 2.1589e-03, - 2DIAGNOSTIC, 11, -6.465310741459e-01, 2.324222161445e-03, 2.4388e-01, 2.1050e-03, - 2DIAGNOSTIC, 12, -6.473532785582e-01, 1.612624267093e-03, 2.4599e-01, 2.1081e-03, - 2DIAGNOSTIC, 13, -6.476577977228e-01, 1.024960439688e-03, 2.4810e-01, 2.1060e-03, - 2DIAGNOSTIC, 14, -6.482814187185e-01, 6.738706582045e-04, 2.5078e-01, 2.6822e-03, - 2DIAGNOSTIC, 15, -6.485460485030e-01, 5.020441216723e-04, 2.5344e-01, 2.6600e-03, - 2DIAGNOSTIC, 16, -6.484528846937e-01, 3.934819370359e-04, 2.5580e-01, 2.3651e-03, - 2DIAGNOSTIC, 17, -6.484557666709e-01, 3.037226845559e-04, 2.5794e-01, 2.1381e-03, - 2DIAGNOSTIC, 18, -6.484635519188e-01, 2.201709433235e-04, 2.6007e-01, 2.1310e-03, - 2DIAGNOSTIC, 19, -6.486104848754e-01, 1.480850263100e-04, 2.6218e-01, 2.1119e-03, - 2DIAGNOSTIC, 20, -6.486382021613e-01, 8.662141681338e-05, 2.6430e-01, 2.1172e-03, - 2DIAGNOSTIC, 21, -6.487314994877e-01, 5.272792916359e-05, 2.7122e-01, 6.9170e-03, - 2DIAGNOSTIC, 22, -6.487314992918e-01, 3.378194001916e-05, 2.7896e-01, 7.7438e-03, - 2DIAGNOSTIC, 23, -6.487314992918e-01, 1.904009146487e-05, 2.8231e-01, 3.3488e-03, - 2DIAGNOSTIC, 24, -6.487314992918e-01, 1.519731227965e-05, 2.8479e-01, 2.4831e-03, - 2DIAGNOSTIC, 25, -6.487314992918e-01, 1.506936540058e-05, 2.8727e-01, 2.4729e-03, - 2DIAGNOSTIC, 26, -6.487314992918e-01, 1.208408086756e-05, 2.8961e-01, 2.3439e-03, - 2DIAGNOSTIC, 27, -6.487314992918e-01, 8.374299010919e-06, 2.9193e-01, 2.3220e-03, - 2DIAGNOSTIC, 28, -6.487314992918e-01, 4.339650473757e-06, 2.9425e-01, 2.3160e-03, - 2DIAGNOSTIC, 29, -6.487314992918e-01, 2.526005668115e-06, 2.9653e-01, 2.2840e-03, - 2DIAGNOSTIC, 30, -6.487314992918e-01, 1.068373280129e-06, 2.9940e-01, 2.8679e-03, - 2DIAGNOSTIC, 31, -6.487314992918e-01, 1.033659414812e-06, 3.0177e-01, 2.3661e-03, - 2DIAGNOSTIC, 32, -6.487314992918e-01, 1.001127890934e-06, 3.0415e-01, 2.3801e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.440949368078e-01, 1.797693134862e+308, 5.3104e-01, 2.2690e-01, - 2DIAGNOSTIC, 2, -5.454124673116e-01, 1.797693134862e+308, 5.4443e-01, 1.3383e-02, - 2DIAGNOSTIC, 3, -5.465081309836e-01, 1.797693134862e+308, 5.5785e-01, 1.3421e-02, - 2DIAGNOSTIC, 4, -5.471451520619e-01, 1.797693134862e+308, 5.7125e-01, 1.3405e-02, - 2DIAGNOSTIC, 5, -5.474945725999e-01, 1.797693134862e+308, 5.8463e-01, 1.3382e-02, - 2DIAGNOSTIC, 6, -5.476485365625e-01, 1.797693134862e+308, 6.0004e-01, 1.5404e-02, - 2DIAGNOSTIC, 7, -5.479963913855e-01, 1.797693134862e+308, 6.2398e-01, 2.3946e-02, - 2DIAGNOSTIC, 8, -5.479695429290e-01, 1.797693134862e+308, 6.3740e-01, 1.3418e-02, - 2DIAGNOSTIC, 9, -5.480574937591e-01, 1.797693134862e+308, 6.5223e-01, 1.4830e-02, - 2DIAGNOSTIC, 10, -5.480893911871e-01, 4.060351118051e-04, 6.6744e-01, 1.5205e-02, - 2DIAGNOSTIC, 11, -5.480981750192e-01, 2.383884729570e-04, 6.8450e-01, 1.7058e-02, - 2DIAGNOSTIC, 12, -5.480923781931e-01, 1.334016070944e-04, 6.9822e-01, 1.3723e-02, - 2DIAGNOSTIC, 13, -5.480638702983e-01, 7.493958688051e-05, 7.1361e-01, 1.5387e-02, - 2DIAGNOSTIC, 14, -5.480517061592e-01, 4.131779483893e-05, 7.2769e-01, 1.4081e-02, - 2DIAGNOSTIC, 15, -5.480326520905e-01, 1.999866003716e-05, 7.4262e-01, 1.4937e-02, - 2DIAGNOSTIC, 16, -5.480343015200e-01, 4.459903693493e-06, 7.5806e-01, 1.5439e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.604550484238e-01, 1.797693134862e+308, 1.1282e+00, 3.7016e-01, - 2DIAGNOSTIC, 2, -4.608342082346e-01, 1.797693134862e+308, 1.2217e+00, 9.3468e-02, - 2DIAGNOSTIC, 3, -4.609485519513e-01, 1.797693134862e+308, 1.3139e+00, 9.2237e-02, - 2DIAGNOSTIC, 4, -4.610345056347e-01, 1.797693134862e+308, 1.4052e+00, 9.1290e-02, - 2DIAGNOSTIC, 5, -4.611996580508e-01, 1.797693134862e+308, 1.4980e+00, 9.2788e-02, - 2DIAGNOSTIC, 6, -4.614092418579e-01, 1.797693134862e+308, 1.6160e+00, 1.1796e-01, - 2DIAGNOSTIC, 7, -4.615240125794e-01, 1.797693134862e+308, 1.7735e+00, 1.5753e-01, - 2DIAGNOSTIC, 8, -4.615409413744e-01, 1.797693134862e+308, 1.8906e+00, 1.1709e-01, - 2DIAGNOSTIC, 9, -4.615379878417e-01, 1.797693134862e+308, 2.0490e+00, 1.5843e-01, - 2DIAGNOSTIC, 10, -4.615364386782e-01, 1.495558912250e-04, 2.1557e+00, 1.0666e-01, - 2DIAGNOSTIC, 11, -4.615358085663e-01, 1.007547122387e-04, 2.2366e+00, 8.0904e-02, - 2DIAGNOSTIC, 12, -4.615342963722e-01, 7.058646438665e-05, 2.3273e+00, 9.0755e-02, - 2DIAGNOSTIC, 13, -4.615350474648e-01, 4.449002877092e-05, 2.4205e+00, 9.3145e-02, - 2DIAGNOSTIC, 14, -4.615336013626e-01, 2.200675608241e-05, 2.5268e+00, 1.0629e-01, - 2DIAGNOSTIC, 15, -4.615334799691e-01, 7.323450892507e-06, 2.6333e+00, 1.0649e-01, - 2DIAGNOSTIC, 16, -4.615333099708e-01, 1.942808855557e-06, 2.7587e+00, 1.2538e-01, - 2DIAGNOSTIC, 17, -4.615324188511e-01, 1.306916778201e-06, 2.8659e+00, 1.0725e-01, - 2DIAGNOSTIC, 18, -4.615314029582e-01, 1.341108928785e-06, 2.9581e+00, 9.2153e-02, - 2DIAGNOSTIC, 19, -4.615306140724e-01, 1.291525815704e-06, 3.0606e+00, 1.0253e-01, - 2DIAGNOSTIC, 20, -4.615315508568e-01, 1.264150774775e-06, 3.1666e+00, 1.0599e-01, - 2DIAGNOSTIC, 21, -4.615315048890e-01, 1.249497273162e-06, 3.2739e+00, 1.0737e-01, - 2DIAGNOSTIC, 22, -4.615327743867e-01, 1.253585468347e-06, 3.3798e+00, 1.0588e-01, - 2DIAGNOSTIC, 23, -4.615325044053e-01, 1.289288402748e-06, 3.4861e+00, 1.0633e-01, - 2DIAGNOSTIC, 24, -4.615320814432e-01, 1.283456846475e-06, 3.5817e+00, 9.5526e-02, - 2DIAGNOSTIC, 25, -4.615322469284e-01, 1.283017863285e-06, 3.6863e+00, 1.0466e-01, - 2DIAGNOSTIC, 26, -4.615343118786e-01, 1.326033888985e-06, 3.7937e+00, 1.0732e-01, - 2DIAGNOSTIC, 27, -4.615303632329e-01, 1.244701932010e-06, 3.8980e+00, 1.0438e-01, - 2DIAGNOSTIC, 28, -4.615320787845e-01, 1.182172385497e-06, 3.9890e+00, 9.0930e-02, - 2DIAGNOSTIC, 29, -4.615335375023e-01, 1.132534991864e-06, 4.0930e+00, 1.0408e-01, - 2DIAGNOSTIC, 30, -4.615318178136e-01, 1.065103559697e-06, 4.1992e+00, 1.0615e-01, - 2DIAGNOSTIC, 31, -4.615349775857e-01, 1.064008830355e-06, 4.2958e+00, 9.6587e-02, - 2DIAGNOSTIC, 32, -4.615359579531e-01, 1.102150322924e-06, 4.4050e+00, 1.0918e-01, - 2DIAGNOSTIC, 33, -4.615397569867e-01, 1.193804357147e-06, 4.5102e+00, 1.0524e-01, - 2DIAGNOSTIC, 34, -4.615414577180e-01, 1.279341277138e-06, 4.6159e+00, 1.0569e-01, - 2DIAGNOSTIC, 35, -4.615457521101e-01, 1.404872859705e-06, 4.7192e+00, 1.0330e-01, - 2DIAGNOSTIC, 36, -4.615547035737e-01, 1.665891682417e-06, 4.8133e+00, 9.4096e-02, - 2DIAGNOSTIC, 37, -4.615673774119e-01, 1.978955100179e-06, 4.9060e+00, 9.2753e-02, - 2DIAGNOSTIC, 38, -4.615903943042e-01, 2.565434961230e-06, 4.9971e+00, 9.1072e-02, - 2DIAGNOSTIC, 39, -4.616315143494e-01, 3.624533160315e-06, 5.0862e+00, 8.9079e-02, - 2DIAGNOSTIC, 40, -4.616845158615e-01, 5.139707324988e-06, 5.1794e+00, 9.3249e-02, - 2DIAGNOSTIC, 41, -4.619787100899e-01, 1.062052747459e-05, 5.2830e+00, 1.0351e-01, - 2DIAGNOSTIC, 42, -4.620648069073e-01, 1.606749493825e-05, 5.5187e+00, 2.3573e-01, - 2DIAGNOSTIC, 43, -4.620662488287e-01, 1.989476488148e-05, 5.6236e+00, 1.0492e-01, - 2DIAGNOSTIC, 44, -4.620670810571e-01, 2.182238234271e-05, 5.7313e+00, 1.0766e-01, - 2DIAGNOSTIC, 45, -4.620619766756e-01, 2.162861419105e-05, 5.8407e+00, 1.0941e-01, - 2DIAGNOSTIC, 46, -4.620657645037e-01, 1.954877128888e-05, 5.9485e+00, 1.0782e-01, - 2DIAGNOSTIC, 47, -4.620635186649e-01, 1.586253452197e-05, 6.0540e+00, 1.0547e-01, - 2DIAGNOSTIC, 48, -4.620630710531e-01, 1.121570669163e-05, 6.1599e+00, 1.0591e-01, - 2DIAGNOSTIC, 49, -4.620643603100e-01, 6.324306332278e-06, 6.2787e+00, 1.1884e-01, - 2DIAGNOSTIC, 50, -4.620630514699e-01, 1.630457017003e-06, 6.3847e+00, 1.0603e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.957203530048e-01, 1.797693134862e+308, 7.7974e+00, 1.4127e+00, - 2DIAGNOSTIC, 2, -3.957312833781e-01, 1.797693134862e+308, 8.6329e+00, 8.3554e-01, - 2DIAGNOSTIC, 3, -3.957307432413e-01, 1.797693134862e+308, 9.3809e+00, 7.4792e-01, - 2DIAGNOSTIC, 4, -3.957314693296e-01, 1.797693134862e+308, 1.0123e+01, 7.4252e-01, - 2DIAGNOSTIC, 5, -3.957314880480e-01, 1.797693134862e+308, 1.0789e+01, 6.6566e-01, - 2DIAGNOSTIC, 6, -3.957312252797e-01, 1.797693134862e+308, 1.1321e+01, 5.3228e-01, - 2DIAGNOSTIC, 7, -3.957310463566e-01, 1.797693134862e+308, 1.1891e+01, 5.6978e-01, - 2DIAGNOSTIC, 8, -3.957310096127e-01, 1.797693134862e+308, 1.2430e+01, 5.3864e-01, - 2DIAGNOSTIC, 9, -3.957310458189e-01, 1.797693134862e+308, 1.3112e+01, 6.8266e-01, - 2DIAGNOSTIC, 10, -3.957311430247e-01, 3.937168301132e-06, 1.3811e+01, 6.9839e-01, - 2DIAGNOSTIC, 11, -3.957310447105e-01, 2.863107541148e-06, 1.4361e+01, 5.5068e-01, - 2DIAGNOSTIC, 12, -3.957306920122e-01, 2.605691058019e-06, 1.4903e+01, 5.4122e-01, - 2DIAGNOSTIC, 13, -3.957308183693e-01, 2.368361489716e-06, 1.5502e+01, 5.9934e-01, - 2DIAGNOSTIC, 14, -3.957308562977e-01, 2.210396869359e-06, 1.6177e+01, 6.7465e-01, - 2DIAGNOSTIC, 15, -3.957306534040e-01, 2.070220600031e-06, 1.6780e+01, 6.0363e-01, - 2DIAGNOSTIC, 16, -3.957305832426e-01, 1.937976056354e-06, 1.7383e+01, 6.0293e-01, - 2DIAGNOSTIC, 17, -3.957303621163e-01, 1.809390303593e-06, 1.7934e+01, 5.5030e-01, - 2DIAGNOSTIC, 18, -3.957304698314e-01, 1.703621101030e-06, 1.8547e+01, 6.1386e-01, - 2DIAGNOSTIC, 19, -3.957304808216e-01, 1.616021668240e-06, 1.9159e+01, 6.1151e-01, - 2DIAGNOSTIC, 20, -3.957305799315e-01, 1.549694130118e-06, 1.9842e+01, 6.8294e-01, - 2DIAGNOSTIC, 21, -3.957301922500e-01, 1.477346242680e-06, 2.0462e+01, 6.2004e-01, - 2DIAGNOSTIC, 22, -3.957302178391e-01, 1.404702420160e-06, 2.0954e+01, 4.9211e-01, - 2DIAGNOSTIC, 23, -3.957301186448e-01, 1.342782488423e-06, 2.1501e+01, 5.4735e-01, - 2DIAGNOSTIC, 24, -3.957300041125e-01, 1.287421119593e-06, 2.1982e+01, 4.8019e-01, - 2DIAGNOSTIC, 25, -3.957299088273e-01, 1.231586505231e-06, 2.2537e+01, 5.5547e-01, - 2DIAGNOSTIC, 26, -3.957299760928e-01, 1.184181182820e-06, 2.3048e+01, 5.1113e-01, - 2DIAGNOSTIC, 27, -3.957300897647e-01, 1.140998755610e-06, 2.3635e+01, 5.8666e-01, - 2DIAGNOSTIC, 28, -3.957301630241e-01, 1.108855749214e-06, 2.4161e+01, 5.2632e-01, - 2DIAGNOSTIC, 29, -3.957298596134e-01, 1.074157285924e-06, 2.4675e+01, 5.1341e-01, - 2DIAGNOSTIC, 30, -3.957299260728e-01, 1.048436180269e-06, 2.5312e+01, 6.3714e-01, - 2DIAGNOSTIC, 31, -3.957300099066e-01, 1.018243963084e-06, 2.5842e+01, 5.2987e-01, - Elapsed time (stage 0): 2.6207e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.383606314654e-01, 1.797693134862e+308, 1.7837e-01, 1.7837e-01, - 2DIAGNOSTIC, 2, -6.395134417192e-01, 1.797693134862e+308, 1.8025e-01, 1.8730e-03, - 2DIAGNOSTIC, 3, -6.411734839191e-01, 1.797693134862e+308, 1.8230e-01, 2.0511e-03, - 2DIAGNOSTIC, 4, -6.430158733873e-01, 1.797693134862e+308, 1.8417e-01, 1.8680e-03, - 2DIAGNOSTIC, 5, -6.444324652469e-01, 1.797693134862e+308, 1.8600e-01, 1.8311e-03, - 2DIAGNOSTIC, 6, -6.460240386599e-01, 1.797693134862e+308, 1.8784e-01, 1.8470e-03, - 2DIAGNOSTIC, 7, -6.474592631474e-01, 1.797693134862e+308, 1.8999e-01, 2.1472e-03, - 2DIAGNOSTIC, 8, -6.482956568488e-01, 1.797693134862e+308, 1.9357e-01, 3.5760e-03, - 2DIAGNOSTIC, 9, -6.483077704725e-01, 1.797693134862e+308, 1.9538e-01, 1.8082e-03, - 2DIAGNOSTIC, 10, -6.483702421621e-01, 1.106976131186e-03, 1.9735e-01, 1.9760e-03, - 2DIAGNOSTIC, 11, -6.484403908778e-01, 8.431069229334e-04, 1.9934e-01, 1.9851e-03, - 2DIAGNOSTIC, 12, -6.485149401122e-01, 5.918443269888e-04, 2.0130e-01, 1.9672e-03, - 2DIAGNOSTIC, 13, -6.485970575001e-01, 3.842521520011e-04, 2.0338e-01, 2.0730e-03, - 2DIAGNOSTIC, 14, -6.487044173920e-01, 2.330272448592e-04, 2.0541e-01, 2.0320e-03, - 2DIAGNOSTIC, 15, -6.488189411550e-01, 1.254148931552e-04, 2.0744e-01, 2.0280e-03, - 2DIAGNOSTIC, 16, -6.490113528870e-01, 6.814499484012e-05, 2.0978e-01, 2.3439e-03, - 2DIAGNOSTIC, 17, -6.492001541356e-01, 5.286701294639e-05, 2.1341e-01, 3.6261e-03, - 2DIAGNOSTIC, 18, -6.492032530651e-01, 5.504807617766e-05, 2.1548e-01, 2.0752e-03, - 2DIAGNOSTIC, 19, -6.492164731463e-01, 5.271941841774e-05, 2.1753e-01, 2.0499e-03, - 2DIAGNOSTIC, 20, -6.492349170062e-01, 4.765861467721e-05, 2.1959e-01, 2.0611e-03, - 2DIAGNOSTIC, 21, -6.492598982074e-01, 4.069595323813e-05, 2.2163e-01, 2.0390e-03, - 2DIAGNOSTIC, 22, -6.492899045109e-01, 3.273152041901e-05, 2.2370e-01, 2.0719e-03, - 2DIAGNOSTIC, 23, -6.493203172095e-01, 2.469197158418e-05, 2.2580e-01, 2.0921e-03, - 2DIAGNOSTIC, 24, -6.493502647627e-01, 1.768434174802e-05, 2.2816e-01, 2.3620e-03, - 2DIAGNOSTIC, 25, -6.494102541068e-01, 1.270482700034e-05, 2.3074e-01, 2.5840e-03, - 2DIAGNOSTIC, 26, -6.494162196488e-01, 1.027303284955e-05, 2.3309e-01, 2.3510e-03, - 2DIAGNOSTIC, 27, -6.494249568725e-01, 1.039325996085e-05, 2.3671e-01, 3.6190e-03, - 2DIAGNOSTIC, 28, -6.494251320929e-01, 9.692351216305e-06, 2.3881e-01, 2.0969e-03, - 2DIAGNOSTIC, 29, -6.494272144953e-01, 8.458013127918e-06, 2.4091e-01, 2.1009e-03, - 2DIAGNOSTIC, 30, -6.494292081104e-01, 6.896058976691e-06, 2.4321e-01, 2.2979e-03, - 2DIAGNOSTIC, 31, -6.494298737723e-01, 5.240563188409e-06, 2.4525e-01, 2.0399e-03, - 2DIAGNOSTIC, 32, -6.494304432379e-01, 3.713631869705e-06, 2.4729e-01, 2.0440e-03, - 2DIAGNOSTIC, 33, -6.494326725177e-01, 2.455032042915e-06, 2.4965e-01, 2.3551e-03, - 2DIAGNOSTIC, 34, -6.494367197561e-01, 1.547410747260e-06, 2.5177e-01, 2.1279e-03, - 2DIAGNOSTIC, 35, -6.494419509924e-01, 1.449019419515e-06, 2.5385e-01, 2.0759e-03, - 2DIAGNOSTIC, 36, -6.494485714200e-01, 1.454657890653e-06, 2.5596e-01, 2.1110e-03, - 2DIAGNOSTIC, 37, -6.494690254279e-01, 1.751565086094e-06, 2.5882e-01, 2.8589e-03, - 2DIAGNOSTIC, 38, -6.494695037668e-01, 1.949842080212e-06, 2.6118e-01, 2.3549e-03, - 2DIAGNOSTIC, 39, -6.494717177529e-01, 2.082678034560e-06, 2.6455e-01, 3.3700e-03, - 2DIAGNOSTIC, 40, -6.494718780592e-01, 2.113697775107e-06, 2.6783e-01, 3.2871e-03, - 2DIAGNOSTIC, 41, -6.494718790337e-01, 2.023594535733e-06, 2.7113e-01, 3.3000e-03, - 2DIAGNOSTIC, 42, -6.494718790478e-01, 1.822007882440e-06, 2.7440e-01, 3.2668e-03, - 2DIAGNOSTIC, 43, -6.494718790480e-01, 1.550625868596e-06, 2.7742e-01, 3.0181e-03, - 2DIAGNOSTIC, 44, -6.494718790480e-01, 1.256800686404e-06, 2.8073e-01, 3.3121e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.427679484703e-01, 1.797693134862e+308, 4.8570e-01, 2.0497e-01, - 2DIAGNOSTIC, 2, -5.451579192813e-01, 1.797693134862e+308, 4.9992e-01, 1.4217e-02, - 2DIAGNOSTIC, 3, -5.477462339292e-01, 1.797693134862e+308, 5.1409e-01, 1.4169e-02, - 2DIAGNOSTIC, 4, -5.496526906899e-01, 1.797693134862e+308, 5.2837e-01, 1.4281e-02, - 2DIAGNOSTIC, 5, -5.502126755046e-01, 1.797693134862e+308, 5.4376e-01, 1.5391e-02, - 2DIAGNOSTIC, 6, -5.511329805259e-01, 1.797693134862e+308, 5.6089e-01, 1.7126e-02, - 2DIAGNOSTIC, 7, -5.518394332154e-01, 1.797693134862e+308, 5.8560e-01, 2.4716e-02, - 2DIAGNOSTIC, 8, -5.518931364787e-01, 1.797693134862e+308, 5.9926e-01, 1.3661e-02, - 2DIAGNOSTIC, 9, -5.520096309972e-01, 1.797693134862e+308, 6.1332e-01, 1.4056e-02, - 2DIAGNOSTIC, 10, -5.520953943513e-01, 1.006551165332e-03, 6.2721e-01, 1.3890e-02, - 2DIAGNOSTIC, 11, -5.521251544670e-01, 6.291034784032e-04, 6.4205e-01, 1.4840e-02, - 2DIAGNOSTIC, 12, -5.521767485659e-01, 3.614528380506e-04, 6.5765e-01, 1.5604e-02, - 2DIAGNOSTIC, 13, -5.521988837926e-01, 2.050448006144e-04, 6.7152e-01, 1.3870e-02, - 2DIAGNOSTIC, 14, -5.522973612047e-01, 1.268030897078e-04, 6.8712e-01, 1.5598e-02, - 2DIAGNOSTIC, 15, -5.523097244172e-01, 6.665564136364e-05, 7.0276e-01, 1.5636e-02, - 2DIAGNOSTIC, 16, -5.523378336387e-01, 3.817232803004e-05, 7.5097e-01, 4.8214e-02, - 2DIAGNOSTIC, 17, -5.523378315721e-01, 3.120574513646e-05, 7.6570e-01, 1.4731e-02, - 2DIAGNOSTIC, 18, -5.523378352927e-01, 2.378279658693e-05, 7.8078e-01, 1.5075e-02, - 2DIAGNOSTIC, 19, -5.523378415831e-01, 1.819766671790e-05, 7.9551e-01, 1.4731e-02, - 2DIAGNOSTIC, 20, -5.523378522141e-01, 1.383612686993e-05, 8.1087e-01, 1.5364e-02, - 2DIAGNOSTIC, 21, -5.523378701744e-01, 9.479177844808e-06, 8.2573e-01, 1.4862e-02, - 2DIAGNOSTIC, 22, -5.523379004985e-01, 6.001672878855e-06, 8.4059e-01, 1.4854e-02, - 2DIAGNOSTIC, 23, -5.523379517621e-01, 2.849177355872e-06, 8.5547e-01, 1.4883e-02, - 2DIAGNOSTIC, 24, -5.523380382458e-01, 1.940408816403e-06, 8.7005e-01, 1.4578e-02, - 2DIAGNOSTIC, 25, -5.523381832180e-01, 1.288366309027e-06, 8.8477e-01, 1.4721e-02, - 2DIAGNOSTIC, 26, -5.523384250060e-01, 1.247528269605e-06, 8.9898e-01, 1.4212e-02, - 2DIAGNOSTIC, 27, -5.523388249347e-01, 1.215204324716e-06, 9.1310e-01, 1.4117e-02, - 2DIAGNOSTIC, 28, -5.523394554391e-01, 1.193462284069e-06, 9.2738e-01, 1.4275e-02, - 2DIAGNOSTIC, 29, -5.523404479959e-01, 1.185565411579e-06, 9.4212e-01, 1.4746e-02, - 2DIAGNOSTIC, 30, -5.523420079601e-01, 1.196692288069e-06, 9.5816e-01, 1.6035e-02, - 2DIAGNOSTIC, 31, -5.523431705564e-01, 1.213545758889e-06, 9.7226e-01, 1.4105e-02, - 2DIAGNOSTIC, 32, -5.523313510412e-01, 1.021773813469e-06, 9.8631e-01, 1.4045e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.594628417276e-01, 1.797693134862e+308, 1.3695e+00, 3.8322e-01, - 2DIAGNOSTIC, 2, -4.601790348611e-01, 1.797693134862e+308, 1.4704e+00, 1.0089e-01, - 2DIAGNOSTIC, 3, -4.608278113624e-01, 1.797693134862e+308, 1.5713e+00, 1.0090e-01, - 2DIAGNOSTIC, 4, -4.612872459850e-01, 1.797693134862e+308, 1.6581e+00, 8.6792e-02, - 2DIAGNOSTIC, 5, -4.615933482656e-01, 1.797693134862e+308, 1.7554e+00, 9.7313e-02, - 2DIAGNOSTIC, 6, -4.618853434283e-01, 1.797693134862e+308, 1.8559e+00, 1.0045e-01, - 2DIAGNOSTIC, 7, -4.620719837564e-01, 1.797693134862e+308, 2.0104e+00, 1.5458e-01, - 2DIAGNOSTIC, 8, -4.621543028963e-01, 1.797693134862e+308, 2.1092e+00, 9.8743e-02, - 2DIAGNOSTIC, 9, -4.622095425089e-01, 1.797693134862e+308, 2.2107e+00, 1.0150e-01, - 2DIAGNOSTIC, 10, -4.623248727465e-01, 3.716468919993e-04, 2.3920e+00, 1.8129e-01, - 2DIAGNOSTIC, 11, -4.623319583023e-01, 2.492952997502e-04, 2.4911e+00, 9.9139e-02, - 2DIAGNOSTIC, 12, -4.623804295768e-01, 1.639756559074e-04, 2.5893e+00, 9.8234e-02, - 2DIAGNOSTIC, 13, -4.624083028570e-01, 1.089802286915e-04, 2.7018e+00, 1.1247e-01, - 2DIAGNOSTIC, 14, -4.624150024598e-01, 7.250012750433e-05, 2.8011e+00, 9.9331e-02, - 2DIAGNOSTIC, 15, -4.624200356200e-01, 4.700113895803e-05, 2.9012e+00, 1.0004e-01, - 2DIAGNOSTIC, 16, -4.624332290840e-01, 3.217239920592e-05, 3.0049e+00, 1.0374e-01, - 2DIAGNOSTIC, 17, -4.624439389704e-01, 2.342142137844e-05, 3.1102e+00, 1.0526e-01, - 2DIAGNOSTIC, 18, -4.624886454777e-01, 1.796804352983e-05, 3.2297e+00, 1.1953e-01, - 2DIAGNOSTIC, 19, -4.624976658433e-01, 1.355289259931e-05, 3.3732e+00, 1.4351e-01, - 2DIAGNOSTIC, 20, -4.624998050484e-01, 1.212492671456e-05, 3.4758e+00, 1.0260e-01, - 2DIAGNOSTIC, 21, -4.625035666717e-01, 1.015659464131e-05, 3.5775e+00, 1.0172e-01, - 2DIAGNOSTIC, 22, -4.625442636994e-01, 1.002705929491e-05, 3.6775e+00, 9.9913e-02, - 2DIAGNOSTIC, 23, -4.625603834992e-01, 1.023388277555e-05, 3.8609e+00, 1.8346e-01, - 2DIAGNOSTIC, 24, -4.625689641268e-01, 9.984362071308e-06, 3.9729e+00, 1.1195e-01, - 2DIAGNOSTIC, 25, -4.625693156061e-01, 9.099194546260e-06, 4.0874e+00, 1.1456e-01, - 2DIAGNOSTIC, 26, -4.625671018423e-01, 7.818048648155e-06, 4.1895e+00, 1.0206e-01, - 2DIAGNOSTIC, 27, -4.625687547977e-01, 6.253966176116e-06, 4.3044e+00, 1.1487e-01, - 2DIAGNOSTIC, 28, -4.625700426722e-01, 5.318084254698e-06, 4.6505e+00, 3.4612e-01, - 2DIAGNOSTIC, 29, -4.625700426692e-01, 4.251505801557e-06, 4.9949e+00, 3.4445e-01, - 2DIAGNOSTIC, 30, -4.625700426692e-01, 3.015279052991e-06, 5.1000e+00, 1.0506e-01, - 2DIAGNOSTIC, 31, -4.625700426692e-01, 1.733036272107e-06, 5.1975e+00, 9.7504e-02, - 2DIAGNOSTIC, 32, -4.625700426692e-01, 1.238956367625e-06, 5.3057e+00, 1.0823e-01, - 2DIAGNOSTIC, 33, -4.625700426692e-01, 1.046391138744e-06, 5.4110e+00, 1.0530e-01, - 2DIAGNOSTIC, 34, -4.625700426692e-01, 1.012340275188e-06, 5.5281e+00, 1.1708e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.951403534811e-01, 1.797693134862e+308, 6.7495e+00, 1.2214e+00, - 2DIAGNOSTIC, 2, -3.953632072134e-01, 1.797693134862e+308, 7.3067e+00, 5.5720e-01, - 2DIAGNOSTIC, 3, -3.955741454476e-01, 1.797693134862e+308, 8.1408e+00, 8.3407e-01, - 2DIAGNOSTIC, 4, -3.957249138870e-01, 1.797693134862e+308, 8.7407e+00, 5.9992e-01, - 2DIAGNOSTIC, 5, -3.957453763400e-01, 1.797693134862e+308, 9.3097e+00, 5.6903e-01, - 2DIAGNOSTIC, 6, -3.958110894836e-01, 1.797693134862e+308, 9.9008e+00, 5.9114e-01, - 2DIAGNOSTIC, 7, -3.959088958320e-01, 1.797693134862e+308, 1.0948e+01, 1.0470e+00, - 2DIAGNOSTIC, 8, -3.959086803143e-01, 1.797693134862e+308, 1.1651e+01, 7.0346e-01, - 2DIAGNOSTIC, 9, -3.959084503748e-01, 1.797693134862e+308, 1.2434e+01, 7.8248e-01, - 2DIAGNOSTIC, 10, -3.959084804341e-01, 1.163831090830e-04, 1.3113e+01, 6.7958e-01, - 2DIAGNOSTIC, 11, -3.959083054682e-01, 7.199946668943e-05, 1.3863e+01, 7.4987e-01, - 2DIAGNOSTIC, 12, -3.959082218919e-01, 4.180613095532e-05, 1.4466e+01, 6.0247e-01, - 2DIAGNOSTIC, 13, -3.959078922564e-01, 2.417328748817e-05, 1.5140e+01, 6.7378e-01, - 2DIAGNOSTIC, 14, -3.959078867089e-01, 1.491353441677e-05, 1.5769e+01, 6.2934e-01, - 2DIAGNOSTIC, 15, -3.959078313277e-01, 6.677720282830e-06, 1.6373e+01, 6.0409e-01, - 2DIAGNOSTIC, 16, -3.959077450033e-01, 1.873133930422e-06, 1.6921e+01, 5.4836e-01, - 2DIAGNOSTIC, 17, -3.959075540271e-01, 1.768337706307e-06, 1.7575e+01, 6.5333e-01, - 2DIAGNOSTIC, 18, -3.959075044362e-01, 1.674705401279e-06, 1.8235e+01, 6.6059e-01, - 2DIAGNOSTIC, 19, -3.959074942599e-01, 1.590285633069e-06, 1.8821e+01, 5.8614e-01, - 2DIAGNOSTIC, 20, -3.959075732990e-01, 1.525942238692e-06, 1.9500e+01, 6.7828e-01, - 2DIAGNOSTIC, 21, -3.959077129997e-01, 1.472490137183e-06, 2.0136e+01, 6.3620e-01, - 2DIAGNOSTIC, 22, -3.959075923791e-01, 1.421509897140e-06, 2.0719e+01, 5.8301e-01, - 2DIAGNOSTIC, 23, -3.959070728887e-01, 1.350960856919e-06, 2.1419e+01, 7.0027e-01, - 2DIAGNOSTIC, 24, -3.959068626848e-01, 1.283268394749e-06, 2.2154e+01, 7.3479e-01, - 2DIAGNOSTIC, 25, -3.959068963652e-01, 1.224219700169e-06, 2.2830e+01, 6.7616e-01, - 2DIAGNOSTIC, 26, -3.959067877734e-01, 1.168626759758e-06, 2.3431e+01, 6.0134e-01, - 2DIAGNOSTIC, 27, -3.959067020012e-01, 1.115144254313e-06, 2.4033e+01, 6.0177e-01, - 2DIAGNOSTIC, 28, -3.959066549274e-01, 1.069358068949e-06, 2.4710e+01, 6.7697e-01, - 2DIAGNOSTIC, 29, -3.959066483388e-01, 1.032669056114e-06, 2.5389e+01, 6.7888e-01, - 2DIAGNOSTIC, 30, -3.959064975435e-01, 1.002439645431e-06, 2.6066e+01, 6.7701e-01, - Elapsed time (stage 1): 2.6445e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.066501032019e-01, 1.797693134862e+308, 2.6555e-01, 2.6555e-01, - 1DIAGNOSTIC, 2, -9.154808533559e-01, 1.797693134862e+308, 3.6557e-01, 1.0001e-01, - 1DIAGNOSTIC, 3, -9.228587208243e-01, 1.797693134862e+308, 4.6601e-01, 1.0045e-01, - 1DIAGNOSTIC, 4, -9.289326221005e-01, 1.797693134862e+308, 5.6508e-01, 9.9067e-02, - 1DIAGNOSTIC, 5, -9.341519830042e-01, 1.797693134862e+308, 6.6311e-01, 9.8031e-02, - 1DIAGNOSTIC, 6, -9.379866420482e-01, 1.797693134862e+308, 7.6253e-01, 9.9421e-02, - 1DIAGNOSTIC, 7, -9.414086330522e-01, 1.797693134862e+308, 8.5772e-01, 9.5191e-02, - 1DIAGNOSTIC, 8, -9.443856482714e-01, 1.797693134862e+308, 9.5378e-01, 9.6053e-02, - 1DIAGNOSTIC, 9, -9.470469204134e-01, 1.797693134862e+308, 1.0530e+00, 9.9213e-02, - 1DIAGNOSTIC, 10, -9.494190084991e-01, 2.803672137346e-03, 1.1474e+00, 9.4368e-02, - 1DIAGNOSTIC, 11, -9.514455806390e-01, 2.138097384585e-03, 1.2436e+00, 9.6236e-02, - 1DIAGNOSTIC, 12, -9.532715108385e-01, 1.660429423961e-03, 1.3435e+00, 9.9862e-02, - 1DIAGNOSTIC, 13, -9.547088236184e-01, 1.310869488022e-03, 1.4416e+00, 9.8133e-02, - 1DIAGNOSTIC, 14, -9.558646551633e-01, 1.047530234269e-03, 1.5403e+00, 9.8734e-02, - 1DIAGNOSTIC, 15, -9.568531103455e-01, 8.483775592165e-04, 1.6314e+00, 9.1115e-02, - 1DIAGNOSTIC, 16, -9.576163157035e-01, 6.826458585960e-04, 1.7242e+00, 9.2721e-02, - 1DIAGNOSTIC, 17, -9.583692646961e-01, 5.473208351867e-04, 1.8195e+00, 9.5392e-02, - 1DIAGNOSTIC, 18, -9.588242304274e-01, 4.336117650126e-04, 1.9193e+00, 9.9755e-02, - 1DIAGNOSTIC, 19, -9.591199667258e-01, 3.383988871812e-04, 2.0181e+00, 9.8841e-02, - 1DIAGNOSTIC, 20, -9.590377836824e-01, 2.556281219130e-04, 2.1169e+00, 9.8752e-02, - 1DIAGNOSTIC, 21, -9.589674278244e-01, 1.848953996781e-04, 2.2222e+00, 1.0531e-01, - 1DIAGNOSTIC, 22, -9.589249398516e-01, 1.276196175489e-04, 2.3196e+00, 9.7422e-02, - 1DIAGNOSTIC, 23, -9.588189456942e-01, 8.069510721773e-05, 2.4200e+00, 1.0033e-01, - 1DIAGNOSTIC, 24, -9.587809191790e-01, 4.412957780732e-05, 2.5285e+00, 1.0849e-01, - 1DIAGNOSTIC, 25, -9.586872189356e-01, 1.717503371656e-05, 2.6358e+00, 1.0731e-01, - 1DIAGNOSTIC, 26, -9.586475442848e-01, -9.380402514608e-07, 2.7391e+00, 1.0330e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.167712767826e-01, 1.797693134862e+308, 3.5596e+00, 8.2050e-01, - 1DIAGNOSTIC, 2, -9.207117492642e-01, 1.797693134862e+308, 4.2238e+00, 6.6425e-01, - 1DIAGNOSTIC, 3, -9.244639249688e-01, 1.797693134862e+308, 4.8813e+00, 6.5748e-01, - 1DIAGNOSTIC, 4, -9.274618591455e-01, 1.797693134862e+308, 5.5342e+00, 6.5290e-01, - 1DIAGNOSTIC, 5, -9.306576123630e-01, 1.797693134862e+308, 6.1953e+00, 6.6108e-01, - 1DIAGNOSTIC, 6, -9.335508915636e-01, 1.797693134862e+308, 6.8501e+00, 6.5481e-01, - 1DIAGNOSTIC, 7, -9.359947390216e-01, 1.797693134862e+308, 7.5069e+00, 6.5677e-01, - 1DIAGNOSTIC, 8, -9.380998764552e-01, 1.797693134862e+308, 8.1650e+00, 6.5813e-01, - 1DIAGNOSTIC, 9, -9.397952030526e-01, 1.797693134862e+308, 8.8246e+00, 6.5958e-01, - 1DIAGNOSTIC, 10, -9.412445430270e-01, 1.687915604679e-03, 9.4783e+00, 6.5374e-01, - 1DIAGNOSTIC, 11, -9.424647457911e-01, 1.360019795865e-03, 1.0148e+01, 6.6923e-01, - 1DIAGNOSTIC, 12, -9.434246481563e-01, 1.088341831986e-03, 1.0805e+01, 6.5738e-01, - 1DIAGNOSTIC, 13, -9.442639150846e-01, 8.674547216549e-04, 1.1443e+01, 6.3838e-01, - 1DIAGNOSTIC, 14, -9.450164131704e-01, 6.802652649271e-04, 1.2092e+01, 6.4900e-01, - 1DIAGNOSTIC, 15, -9.456985891637e-01, 5.339618392278e-04, 1.2755e+01, 6.6268e-01, - 1DIAGNOSTIC, 16, -9.463002937370e-01, 4.228892192781e-04, 1.3399e+01, 6.4435e-01, - 1DIAGNOSTIC, 17, -9.468189590847e-01, 3.385070079482e-04, 1.4045e+01, 6.4559e-01, - 1DIAGNOSTIC, 18, -9.472878338218e-01, 2.753994536681e-04, 1.4719e+01, 6.7365e-01, - 1DIAGNOSTIC, 19, -9.477036383775e-01, 2.269012847558e-04, 1.5360e+01, 6.4126e-01, - 1DIAGNOSTIC, 20, -9.480661676100e-01, 1.894574917625e-04, 1.6028e+01, 6.6789e-01, - 1DIAGNOSTIC, 21, -9.483965462799e-01, 1.602230201216e-04, 1.6704e+01, 6.7624e-01, - 1DIAGNOSTIC, 22, -9.486963579867e-01, 1.359814404882e-04, 1.7367e+01, 6.6269e-01, - 1DIAGNOSTIC, 23, -9.489589875469e-01, 1.155972937565e-04, 1.8020e+01, 6.5360e-01, - 1DIAGNOSTIC, 24, -9.492006560816e-01, 9.859253320996e-05, 1.8688e+01, 6.6793e-01, - 1DIAGNOSTIC, 25, -9.494249246606e-01, 8.465420465851e-05, 1.9354e+01, 6.6547e-01, - 1DIAGNOSTIC, 26, -9.496285311460e-01, 7.320314947930e-05, 2.0006e+01, 6.5279e-01, - 1DIAGNOSTIC, 27, -9.498106392679e-01, 6.356859651041e-05, 2.0659e+01, 6.5221e-01, - 1DIAGNOSTIC, 28, -9.499700820228e-01, 5.543726055732e-05, 2.1321e+01, 6.6286e-01, - 1DIAGNOSTIC, 29, -9.501173926020e-01, 4.853836288164e-05, 2.1982e+01, 6.6053e-01, - 1DIAGNOSTIC, 30, -9.502506183049e-01, 4.254134862458e-05, 2.2644e+01, 6.6236e-01, - 1DIAGNOSTIC, 31, -9.503699367916e-01, 3.732781656245e-05, 2.3279e+01, 6.3499e-01, - 1DIAGNOSTIC, 32, -9.504742064859e-01, 3.276696760198e-05, 2.3954e+01, 6.7475e-01, - 1DIAGNOSTIC, 33, -9.505684696716e-01, 2.869436873326e-05, 2.4604e+01, 6.4993e-01, - 1DIAGNOSTIC, 34, -9.506597239919e-01, 2.514676113632e-05, 2.5235e+01, 6.3098e-01, - 1DIAGNOSTIC, 35, -9.507405075417e-01, 2.209526069420e-05, 2.5910e+01, 6.7541e-01, - 1DIAGNOSTIC, 36, -9.508155549203e-01, 1.950354651544e-05, 2.6558e+01, 6.4757e-01, - 1DIAGNOSTIC, 37, -9.508872037914e-01, 1.732410586491e-05, 2.7196e+01, 6.3846e-01, - 1DIAGNOSTIC, 38, -9.509538420979e-01, 1.546216999801e-05, 2.7839e+01, 6.4264e-01, - 1DIAGNOSTIC, 39, -9.510120335283e-01, 1.386893209133e-05, 2.8508e+01, 6.6856e-01, - 1DIAGNOSTIC, 40, -9.510681236187e-01, 1.251906956467e-05, 2.9167e+01, 6.5958e-01, - 1DIAGNOSTIC, 41, -9.511192843985e-01, 1.135397642516e-05, 2.9835e+01, 6.6821e-01, - 1DIAGNOSTIC, 42, -9.511688920998e-01, 1.032441784854e-05, 3.0510e+01, 6.7480e-01, - 1DIAGNOSTIC, 43, -9.512169331090e-01, 9.411876788885e-06, 3.1175e+01, 6.6505e-01, - 1DIAGNOSTIC, 44, -9.512607741438e-01, 8.625144774236e-06, 3.1833e+01, 6.5817e-01, - 1DIAGNOSTIC, 45, -9.513010992793e-01, 7.918304234363e-06, 3.2497e+01, 6.6385e-01, - 1DIAGNOSTIC, 46, -9.513404914153e-01, 7.291818537473e-06, 3.3172e+01, 6.7435e-01, - 1DIAGNOSTIC, 47, -9.513727830170e-01, 6.716583804970e-06, 3.3831e+01, 6.5894e-01, - 1DIAGNOSTIC, 48, -9.514071838495e-01, 6.213339918799e-06, 3.4484e+01, 6.5319e-01, - 1DIAGNOSTIC, 49, -9.514356018948e-01, 5.723274066456e-06, 3.5118e+01, 6.3408e-01, - 1DIAGNOSTIC, 50, -9.514649490820e-01, 5.274830020371e-06, 3.5792e+01, 6.7406e-01, - 1DIAGNOSTIC, 51, -9.514934197542e-01, 4.862989812126e-06, 3.6446e+01, 6.5361e-01, - 1DIAGNOSTIC, 52, -9.515275474120e-01, 4.538815523515e-06, 3.7115e+01, 6.6987e-01, - 1DIAGNOSTIC, 53, -9.515525855701e-01, 4.258535137518e-06, 3.7789e+01, 6.7335e-01, - 1DIAGNOSTIC, 54, -9.515761906915e-01, 4.009093670990e-06, 3.8464e+01, 6.7507e-01, - 1DIAGNOSTIC, 55, -9.515997510851e-01, 3.785742113287e-06, 3.9129e+01, 6.6480e-01, - 1DIAGNOSTIC, 56, -9.516173816302e-01, 3.564453697976e-06, 3.9792e+01, 6.6319e-01, - 1DIAGNOSTIC, 57, -9.516380661358e-01, 3.338373678309e-06, 4.0456e+01, 6.6403e-01, - 1DIAGNOSTIC, 58, -9.516576512956e-01, 3.129426131777e-06, 4.1127e+01, 6.7096e-01, - 1DIAGNOSTIC, 59, -9.516777178536e-01, 2.923697069925e-06, 4.1793e+01, 6.6659e-01, - 1DIAGNOSTIC, 60, -9.516941392945e-01, 2.722075255195e-06, 4.2462e+01, 6.6839e-01, - 1DIAGNOSTIC, 61, -9.517020551775e-01, 2.492307433714e-06, 4.3130e+01, 6.6790e-01, - 1DIAGNOSTIC, 62, -9.517162248585e-01, 2.313280856380e-06, 4.3802e+01, 6.7188e-01, - 1DIAGNOSTIC, 63, -9.517369864396e-01, 2.182143269240e-06, 4.4454e+01, 6.5235e-01, - 1DIAGNOSTIC, 64, -9.517574594482e-01, 2.096407235707e-06, 4.5106e+01, 6.5204e-01, - 1DIAGNOSTIC, 65, -9.517764772544e-01, 2.054170303106e-06, 4.5742e+01, 6.3590e-01, - 1DIAGNOSTIC, 66, -9.517824285615e-01, 1.968868804412e-06, 4.6407e+01, 6.6495e-01, - 1DIAGNOSTIC, 67, -9.518011740181e-01, 1.919655729668e-06, 4.7078e+01, 6.7142e-01, - 1DIAGNOSTIC, 68, -9.518208341976e-01, 1.902144130053e-06, 4.7734e+01, 6.5623e-01, - 1DIAGNOSTIC, 69, -9.518373452727e-01, 1.902324085864e-06, 4.8385e+01, 6.5083e-01, - 1DIAGNOSTIC, 70, -9.518528468281e-01, 1.900275332872e-06, 4.9059e+01, 6.7366e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.057371790515e-01, 1.797693134862e+308, 5.4711e+01, 5.6515e+00, - 1DIAGNOSTIC, 2, -9.084914092021e-01, 1.797693134862e+308, 6.0038e+01, 5.3272e+00, - 1DIAGNOSTIC, 3, -9.112987559900e-01, 1.797693134862e+308, 6.5397e+01, 5.3597e+00, - 1DIAGNOSTIC, 4, -9.141159213644e-01, 1.797693134862e+308, 7.0749e+01, 5.3514e+00, - 1DIAGNOSTIC, 5, -9.164291521365e-01, 1.797693134862e+308, 7.6118e+01, 5.3687e+00, - 1DIAGNOSTIC, 6, -9.186753807641e-01, 1.797693134862e+308, 8.1425e+01, 5.3070e+00, - 1DIAGNOSTIC, 7, -9.206513842205e-01, 1.797693134862e+308, 8.6769e+01, 5.3447e+00, - 1DIAGNOSTIC, 8, -9.223444605599e-01, 1.797693134862e+308, 9.2092e+01, 5.3226e+00, - 1DIAGNOSTIC, 9, -9.238184064940e-01, 1.797693134862e+308, 9.7433e+01, 5.3408e+00, - 1DIAGNOSTIC, 10, -9.251162690533e-01, 1.365725765866e-03, 1.0279e+02, 5.3540e+00, - 1DIAGNOSTIC, 11, -9.262740481150e-01, 1.122337133780e-03, 1.0817e+02, 5.3804e+00, - 1DIAGNOSTIC, 12, -9.270768011401e-01, 9.099495736667e-04, 1.1354e+02, 5.3742e+00, - 1DIAGNOSTIC, 13, -9.278054441725e-01, 7.316512148588e-04, 1.1893e+02, 5.3893e+00, - 1DIAGNOSTIC, 14, -9.284839236126e-01, 5.892103638721e-04, 1.2431e+02, 5.3753e+00, - 1DIAGNOSTIC, 15, -9.291136235162e-01, 4.720769641667e-04, 1.2971e+02, 5.4070e+00, - 1DIAGNOSTIC, 16, -9.296914423270e-01, 3.803786337423e-04, 1.3509e+02, 5.3754e+00, - 1DIAGNOSTIC, 17, -9.302250289899e-01, 3.097612931325e-04, 1.4046e+02, 5.3756e+00, - 1DIAGNOSTIC, 18, -9.307200868158e-01, 2.556942680129e-04, 1.4581e+02, 5.3497e+00, - 1DIAGNOSTIC, 19, -9.311803003780e-01, 2.148038799890e-04, 1.5119e+02, 5.3754e+00, - 1DIAGNOSTIC, 20, -9.316052783250e-01, 1.843749934930e-04, 1.5653e+02, 5.3454e+00, - 1DIAGNOSTIC, 21, -9.320096439942e-01, 1.625121659253e-04, 1.6190e+02, 5.3645e+00, - 1DIAGNOSTIC, 22, -9.323748474338e-01, 1.437590951946e-04, 1.6724e+02, 5.3445e+00, - 1DIAGNOSTIC, 23, -9.327084243864e-01, 1.273672797142e-04, 1.7263e+02, 5.3913e+00, - 1DIAGNOSTIC, 24, -9.330115850661e-01, 1.129656513338e-04, 1.7798e+02, 5.3420e+00, - 1DIAGNOSTIC, 25, -9.332845768052e-01, 1.002048092373e-04, 1.8335e+02, 5.3698e+00, - 1DIAGNOSTIC, 26, -9.335329096803e-01, 8.877111391410e-05, 1.8873e+02, 5.3879e+00, - 1DIAGNOSTIC, 27, -9.337594594035e-01, 7.848517524463e-05, 1.9413e+02, 5.3945e+00, - 1DIAGNOSTIC, 28, -9.339693299175e-01, 6.928467070091e-05, 1.9946e+02, 5.3336e+00, - 1DIAGNOSTIC, 29, -9.341596129717e-01, 6.108954908873e-05, 2.0483e+02, 5.3630e+00, - 1DIAGNOSTIC, 30, -9.343370322732e-01, 5.385694206783e-05, 2.1021e+02, 5.3867e+00, - 1DIAGNOSTIC, 31, -9.344978649542e-01, 4.762227381698e-05, 2.1563e+02, 5.4146e+00, - 1DIAGNOSTIC, 32, -9.346510529442e-01, 4.227298555328e-05, 2.2102e+02, 5.3936e+00, - 1DIAGNOSTIC, 33, -9.347910800073e-01, 3.768024952102e-05, 2.2643e+02, 5.4104e+00, - 1DIAGNOSTIC, 34, -9.349227474588e-01, 3.374670386447e-05, 2.3178e+02, 5.3535e+00, - 1DIAGNOSTIC, 35, -9.350462646455e-01, 3.035177910364e-05, 2.3717e+02, 5.3886e+00, - 1DIAGNOSTIC, 36, -9.351593208018e-01, 2.738506041959e-05, 2.4251e+02, 5.3366e+00, - 1DIAGNOSTIC, 37, -9.352617712451e-01, 2.474774772438e-05, 2.4790e+02, 5.3946e+00, - 1DIAGNOSTIC, 38, -9.353591542167e-01, 2.242227578646e-05, 2.5326e+02, 5.3540e+00, - 1DIAGNOSTIC, 39, -9.354503096596e-01, 2.034180785056e-05, 2.5863e+02, 5.3674e+00, - 1DIAGNOSTIC, 40, -9.355345335442e-01, 1.848198806813e-05, 2.6400e+02, 5.3753e+00, - 1DIAGNOSTIC, 41, -9.356125752731e-01, 1.678677993815e-05, 2.6940e+02, 5.3945e+00, - 1DIAGNOSTIC, 42, -9.356852389139e-01, 1.527069451548e-05, 2.7476e+02, 5.3684e+00, - 1DIAGNOSTIC, 43, -9.357520511768e-01, 1.389288300931e-05, 2.8013e+02, 5.3655e+00, - 1DIAGNOSTIC, 44, -9.358142319047e-01, 1.265166191428e-05, 2.8552e+02, 5.3935e+00, - 1DIAGNOSTIC, 45, -9.358716902997e-01, 1.154022624937e-05, 2.9091e+02, 5.3853e+00, - 1DIAGNOSTIC, 46, -9.359243151969e-01, 1.052948493753e-05, 2.9628e+02, 5.3691e+00, - 1DIAGNOSTIC, 47, -9.359735818212e-01, 9.595358401400e-06, 3.0170e+02, 5.4203e+00, - 1DIAGNOSTIC, 48, -9.360171484269e-01, 8.732903139502e-06, 3.0708e+02, 5.3801e+00, - 1DIAGNOSTIC, 49, -9.360600216720e-01, 7.959124023387e-06, 3.1247e+02, 5.3910e+00, - 1DIAGNOSTIC, 50, -9.361008539962e-01, 7.270977864980e-06, 3.1782e+02, 5.3486e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.011712970934e-01, 1.797693134862e+308, 3.6178e+02, 4.3964e+01, - 1DIAGNOSTIC, 2, -9.025124679594e-01, 1.797693134862e+308, 4.0528e+02, 4.3500e+01, - 1DIAGNOSTIC, 3, -9.038251011952e-01, 1.797693134862e+308, 4.4863e+02, 4.3345e+01, - 1DIAGNOSTIC, 4, -9.050328267560e-01, 1.797693134862e+308, 4.9201e+02, 4.3389e+01, - 1DIAGNOSTIC, 5, -9.061958500698e-01, 1.797693134862e+308, 5.3526e+02, 4.3241e+01, - 1DIAGNOSTIC, 6, -9.072896849025e-01, 1.797693134862e+308, 5.7844e+02, 4.3188e+01, - 1DIAGNOSTIC, 7, -9.083896620888e-01, 1.797693134862e+308, 6.2216e+02, 4.3720e+01, - 1DIAGNOSTIC, 8, -9.095083905158e-01, 1.797693134862e+308, 6.6537e+02, 4.3208e+01, - 1DIAGNOSTIC, 9, -9.106848617085e-01, 1.797693134862e+308, 7.0869e+02, 4.3318e+01, - 1DIAGNOSTIC, 10, -9.118461297996e-01, 7.414878959944e-04, 7.5221e+02, 4.3523e+01, - 1DIAGNOSTIC, 11, -9.128581025507e-01, 6.593380359388e-04, 7.9550e+02, 4.3289e+01, - 1DIAGNOSTIC, 12, -9.137572684054e-01, 5.898392192306e-04, 8.3878e+02, 4.3276e+01, - 1DIAGNOSTIC, 13, -9.145461112501e-01, 5.280610538536e-04, 8.8206e+02, 4.3282e+01, - 1DIAGNOSTIC, 14, -9.152419355560e-01, 4.693693363223e-04, 9.2520e+02, 4.3139e+01, - 1DIAGNOSTIC, 15, -9.158545118070e-01, 4.124286564186e-04, 9.6855e+02, 4.3355e+01, - 1DIAGNOSTIC, 16, -9.163914552105e-01, 3.564874194759e-04, 1.0117e+03, 4.3106e+01, - 1DIAGNOSTIC, 17, -9.168867412762e-01, 3.035253865723e-04, 1.0549e+03, 4.3228e+01, - 1DIAGNOSTIC, 18, -9.173400670698e-01, 2.555383377246e-04, 1.0982e+03, 4.3270e+01, - 1DIAGNOSTIC, 19, -9.177424693325e-01, 2.146993417447e-04, 1.1415e+03, 4.3316e+01, - 1DIAGNOSTIC, 20, -9.181113784018e-01, 1.817606151946e-04, 1.1848e+03, 4.3368e+01, - Elapsed time (stage 2): 1185 - - -Total elapsed time: 1238 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:24 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:24 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:27 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:31 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:34 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:35 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18553 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:35 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:38 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:38 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18629 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:38 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/anat/sub-PNC007_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:41 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:41 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18692 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:41 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 18700 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:42 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:48 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:50 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:50 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:51 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:52 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:54 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:54 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:55 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:56 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:58 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:58 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/surf/sub-PNC007_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:42:59 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:18 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02/sub-PNC007_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC007 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:19 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC007 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:19 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC007 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:19 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19317 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:21 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:21 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc/sub-PNC007_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/xfm/sub-PNC007_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19346 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:23 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:23 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC007_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 67.200 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/logs/proc_func_18-03-2024-17745.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:29 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC007 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-02/QC/sub-PNC007_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/16181_micapipe_proc-func_sub-PNC007_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC007* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 67.250 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC007_ses-02 -========================reprocessing without filter=================== -sub-PNC007_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC007 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC007 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC007 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC007 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:35 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:43:35 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:45:40 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:47:45 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Mon Mar 18 23:47:59 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.47 (mm) at sub-brick 23 -++ Max delta displ in automask = 0.15 (mm) at sub-brick 72 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:00:38 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:00:57 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:03:07 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:05:21 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC007/ses-03/func/sub-PNC007_ses-03_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:07:37 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = 0.203 -2.014 1.841 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.0 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = 0.306 -2.287 2.457 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 74.9 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:12:27 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:12:54 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x558b20ff26f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.143, 67.8677, -109.738] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558b20e69730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558b21009320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x558b20ff5fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [73.8093, 126.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558b20ffbe10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558b21806230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x558b218045c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.143, 67.8677, -109.738] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558b20ff83f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558b22330450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x558b21802da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [73.8093, 126.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558b20fff360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558b22b2a780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.334867689231e-01, 1.797693134862e+308, 4.2574e-02, 4.2573e-02, - 2DIAGNOSTIC, 2, -7.346560140786e-01, 1.797693134862e+308, 4.3804e-02, 1.2300e-03, - 2DIAGNOSTIC, 3, -7.376514528738e-01, 1.797693134862e+308, 4.5018e-02, 1.2140e-03, - 2DIAGNOSTIC, 4, -7.406336986227e-01, 1.797693134862e+308, 4.6414e-02, 1.3962e-03, - 2DIAGNOSTIC, 5, -7.416351598872e-01, 1.797693134862e+308, 4.8202e-02, 1.7872e-03, - 2DIAGNOSTIC, 6, -7.425341192261e-01, 1.797693134862e+308, 4.9522e-02, 1.3201e-03, - 2DIAGNOSTIC, 7, -7.511680001422e-01, 1.797693134862e+308, 5.0840e-02, 1.3180e-03, - 2DIAGNOSTIC, 8, -7.734001147271e-01, 1.797693134862e+308, 5.2143e-02, 1.3030e-03, - 2DIAGNOSTIC, 9, -7.879822185590e-01, 1.797693134862e+308, 5.3742e-02, 1.5998e-03, - 2DIAGNOSTIC, 10, -8.214233184280e-01, 6.190685901166e-03, 5.6453e-02, 2.7111e-03, - 2DIAGNOSTIC, 11, -8.215906003545e-01, 7.106832204806e-03, 5.8150e-02, 1.6961e-03, - 2DIAGNOSTIC, 12, -8.216802442176e-01, 7.276814681453e-03, 5.9640e-02, 1.4901e-03, - 2DIAGNOSTIC, 13, -8.225826422033e-01, 6.876225698839e-03, 6.1086e-02, 1.4460e-03, - 2DIAGNOSTIC, 14, -8.250750756155e-01, 6.047663912231e-03, 6.2560e-02, 1.4741e-03, - 2DIAGNOSTIC, 15, -8.293909370259e-01, 4.908392475393e-03, 6.4060e-02, 1.4999e-03, - 2DIAGNOSTIC, 16, -8.390939338925e-01, 3.711086641603e-03, 6.5757e-02, 1.6968e-03, - 2DIAGNOSTIC, 17, -8.552729184938e-01, 2.846126987096e-03, 6.7491e-02, 1.7340e-03, - 2DIAGNOSTIC, 18, -8.640840717664e-01, 2.435685589043e-03, 6.9001e-02, 1.5109e-03, - 2DIAGNOSTIC, 19, -8.737921695586e-01, 2.285998629987e-03, 7.0951e-02, 1.9491e-03, - 2DIAGNOSTIC, 20, -8.748361840979e-01, 2.553919986698e-03, 7.2633e-02, 1.6820e-03, - 2DIAGNOSTIC, 21, -8.754543213816e-01, 2.571147633165e-03, 7.4083e-02, 1.4501e-03, - 2DIAGNOSTIC, 22, -8.761867464879e-01, 2.358970866738e-03, 7.5999e-02, 1.9162e-03, - 2DIAGNOSTIC, 23, -8.763396273830e-01, 1.961532659954e-03, 7.8661e-02, 2.6619e-03, - 2DIAGNOSTIC, 24, -8.765917859937e-01, 1.457743301361e-03, 8.0120e-02, 1.4591e-03, - 2DIAGNOSTIC, 25, -8.769017935049e-01, 9.256526790580e-04, 8.1640e-02, 1.5199e-03, - 2DIAGNOSTIC, 26, -8.771225784064e-01, 4.805762911120e-04, 8.3100e-02, 1.4598e-03, - 2DIAGNOSTIC, 27, -8.777155627854e-01, 2.394782833691e-04, 8.4528e-02, 1.4281e-03, - 2DIAGNOSTIC, 28, -8.786619501011e-01, 1.115502747058e-04, 8.5967e-02, 1.4391e-03, - 2DIAGNOSTIC, 29, -8.798012365297e-01, 1.113128479795e-04, 8.7413e-02, 1.4460e-03, - 2DIAGNOSTIC, 30, -8.844221578924e-01, 1.653906070904e-04, 8.8938e-02, 1.5249e-03, - 2DIAGNOSTIC, 31, -9.088365735137e-01, 4.756843990453e-04, 9.1301e-02, 2.3630e-03, - 2DIAGNOSTIC, 32, -9.067533192209e-01, 6.987645339753e-04, 9.2973e-02, 1.6720e-03, - 2DIAGNOSTIC, 33, -9.099309024637e-01, 8.796639934936e-04, 9.4908e-02, 1.9350e-03, - 2DIAGNOSTIC, 34, -9.138743054571e-01, 1.010073507270e-03, 9.6645e-02, 1.7371e-03, - 2DIAGNOSTIC, 35, -9.162162120715e-01, 1.059764341851e-03, 9.8107e-02, 1.4620e-03, - 2DIAGNOSTIC, 36, -9.201896709678e-01, 1.041761916997e-03, 9.9798e-02, 1.6911e-03, - 2DIAGNOSTIC, 37, -9.232332535436e-01, 9.588351547997e-04, 1.0265e-01, 2.8520e-03, - 2DIAGNOSTIC, 38, -9.226454369598e-01, 7.960531365623e-04, 1.0412e-01, 1.4729e-03, - 2DIAGNOSTIC, 39, -9.244831618908e-01, 5.937269176878e-04, 1.0559e-01, 1.4660e-03, - 2DIAGNOSTIC, 40, -9.266216822477e-01, 3.962836150955e-04, 1.0709e-01, 1.5001e-03, - 2DIAGNOSTIC, 41, -9.288501698582e-01, 3.890254227764e-04, 1.0855e-01, 1.4639e-03, - 2DIAGNOSTIC, 42, -9.299903031762e-01, 3.370460484843e-04, 1.1001e-01, 1.4529e-03, - 2DIAGNOSTIC, 43, -9.318898365570e-01, 2.949152605832e-04, 1.1147e-01, 1.4620e-03, - 2DIAGNOSTIC, 44, -9.411849443400e-01, 3.265382663524e-04, 1.1363e-01, 2.1639e-03, - 2DIAGNOSTIC, 45, -9.428543257584e-01, 3.523709802573e-04, 1.1557e-01, 1.9350e-03, - 2DIAGNOSTIC, 46, -9.453901443119e-01, 3.899996555016e-04, 1.1775e-01, 2.1801e-03, - 2DIAGNOSTIC, 47, -9.464361587125e-01, 4.183375681102e-04, 1.1953e-01, 1.7869e-03, - 2DIAGNOSTIC, 48, -9.503150348776e-01, 4.277540800827e-04, 1.2106e-01, 1.5268e-03, - 2DIAGNOSTIC, 49, -9.529574318525e-01, 4.242815523152e-04, 1.2258e-01, 1.5211e-03, - 2DIAGNOSTIC, 50, -9.554122100893e-01, 4.098402548017e-04, 1.2406e-01, 1.4739e-03, - 2DIAGNOSTIC, 51, -9.600665042619e-01, 4.016818659328e-04, 1.2556e-01, 1.5001e-03, - 2DIAGNOSTIC, 52, -9.849991339069e-01, 5.186936591392e-04, 1.2722e-01, 1.6601e-03, - 2DIAGNOSTIC, 53, -1.017034187379e+00, 7.833608754536e-04, 1.3034e-01, 3.1271e-03, - 2DIAGNOSTIC, 54, -1.023034355304e+00, 1.049767232049e-03, 1.3200e-01, 1.6592e-03, - 2DIAGNOSTIC, 55, -1.026543411837e+00, 1.238050868277e-03, 1.3343e-01, 1.4238e-03, - 2DIAGNOSTIC, 56, -1.032149425020e+00, 1.348812239340e-03, 1.3487e-01, 1.4431e-03, - 2DIAGNOSTIC, 57, -1.036059384657e+00, 1.350202595450e-03, 1.3631e-01, 1.4360e-03, - 2DIAGNOSTIC, 58, -1.039678047867e+00, 1.260096137196e-03, 1.3799e-01, 1.6890e-03, - 2DIAGNOSTIC, 59, -1.041873759476e+00, 1.079973766568e-03, 1.3969e-01, 1.6959e-03, - 2DIAGNOSTIC, 60, -1.042921065791e+00, 8.252463083310e-04, 1.4135e-01, 1.6632e-03, - 2DIAGNOSTIC, 61, -1.043902796101e+00, 5.288945312340e-04, 1.4327e-01, 1.9200e-03, - 2DIAGNOSTIC, 62, -1.044157077232e+00, 3.171177736919e-04, 1.4471e-01, 1.4319e-03, - 2DIAGNOSTIC, 63, -1.044842515472e+00, 2.462374036627e-04, 1.4614e-01, 1.4341e-03, - 2DIAGNOSTIC, 64, -1.048359582765e+00, 2.010320034278e-04, 1.4826e-01, 2.1229e-03, - 2DIAGNOSTIC, 65, -1.049604242393e+00, 1.603193551806e-04, 1.4974e-01, 1.4760e-03, - 2DIAGNOSTIC, 66, -1.050337665132e+00, 1.356107558938e-04, 1.5116e-01, 1.4222e-03, - 2DIAGNOSTIC, 67, -1.051051303279e+00, 1.202553900661e-04, 1.5284e-01, 1.6799e-03, - 2DIAGNOSTIC, 68, -1.051347713931e+00, 1.116334969531e-04, 1.5450e-01, 1.6592e-03, - 2DIAGNOSTIC, 69, -1.050078378273e+00, 9.648548407191e-05, 1.5666e-01, 2.1598e-03, - 2DIAGNOSTIC, 70, -1.050154543711e+00, 7.758932977187e-05, 1.5837e-01, 1.7090e-03, - 2DIAGNOSTIC, 71, -1.050453194913e+00, 5.758815224914e-05, 1.6002e-01, 1.6499e-03, - 2DIAGNOSTIC, 72, -1.050687113626e+00, 3.482004772665e-05, 1.6167e-01, 1.6510e-03, - 2DIAGNOSTIC, 73, -1.050776470328e+00, 1.240354353288e-05, 1.6332e-01, 1.6501e-03, - 2DIAGNOSTIC, 74, -1.052737164079e+00, 1.237851290608e-05, 1.6547e-01, 2.1470e-03, - 2DIAGNOSTIC, 75, -1.053028256815e+00, 1.727462409446e-05, 1.6692e-01, 1.4539e-03, - 2DIAGNOSTIC, 76, -1.053089131725e+00, 2.350507816511e-05, 1.6834e-01, 1.4198e-03, - 2DIAGNOSTIC, 77, -1.053166027371e+00, 3.050106289148e-05, 1.7386e-01, 5.5211e-03, - 2DIAGNOSTIC, 78, -1.053166027330e+00, 3.570118897515e-05, 1.7928e-01, 5.4190e-03, - 2DIAGNOSTIC, 79, -1.053166027330e+00, 3.234267544157e-05, 1.8142e-01, 2.1439e-03, - 2DIAGNOSTIC, 80, -1.053166027330e+00, 2.623502506695e-05, 1.8306e-01, 1.6351e-03, - 2DIAGNOSTIC, 81, -1.053166027330e+00, 1.902253700071e-05, 1.8465e-01, 1.5950e-03, - 2DIAGNOSTIC, 82, -1.053166027330e+00, 1.117273409671e-05, 1.8629e-01, 1.6332e-03, - 2DIAGNOSTIC, 83, -1.053166027330e+00, 2.636210000366e-06, 1.8818e-01, 1.8969e-03, - 2DIAGNOSTIC, 84, -1.053166027330e+00, 1.164397498060e-06, 1.8985e-01, 1.6620e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.590456225885e-01, 1.797693134862e+308, 2.3764e-01, 4.7796e-02, - 2DIAGNOSTIC, 2, -6.593500480694e-01, 1.797693134862e+308, 2.4034e-01, 2.6989e-03, - 2DIAGNOSTIC, 3, -6.604438353160e-01, 1.797693134862e+308, 2.4304e-01, 2.6970e-03, - 2DIAGNOSTIC, 4, -6.612884393891e-01, 1.797693134862e+308, 2.4582e-01, 2.7790e-03, - 2DIAGNOSTIC, 5, -6.616219683225e-01, 1.797693134862e+308, 2.4828e-01, 2.4631e-03, - 2DIAGNOSTIC, 6, -6.616437922839e-01, 1.797693134862e+308, 2.5046e-01, 2.1820e-03, - 2DIAGNOSTIC, 7, -6.619534310536e-01, 1.797693134862e+308, 2.5266e-01, 2.1989e-03, - 2DIAGNOSTIC, 8, -6.658268852600e-01, 1.797693134862e+308, 2.5569e-01, 3.0260e-03, - 2DIAGNOSTIC, 9, -6.694081057350e-01, 1.797693134862e+308, 2.5901e-01, 3.3252e-03, - 2DIAGNOSTIC, 10, -6.693410871728e-01, 9.966771174068e-04, 2.6133e-01, 2.3150e-03, - 2DIAGNOSTIC, 11, -6.698213787118e-01, 1.013601273082e-03, 2.6366e-01, 2.3351e-03, - 2DIAGNOSTIC, 12, -6.702975941617e-01, 9.652015782617e-04, 2.6598e-01, 2.3191e-03, - 2DIAGNOSTIC, 13, -6.712783053152e-01, 9.020217182075e-04, 2.6848e-01, 2.4941e-03, - 2DIAGNOSTIC, 14, -6.730620075190e-01, 8.435002207820e-04, 2.7125e-01, 2.7699e-03, - 2DIAGNOSTIC, 15, -6.743794685352e-01, 7.635973543743e-04, 2.7400e-01, 2.7540e-03, - 2DIAGNOSTIC, 16, -6.743928023409e-01, 6.272687788787e-04, 2.7645e-01, 2.4550e-03, - 2DIAGNOSTIC, 17, -6.743313014165e-01, 4.549076610243e-04, 2.7892e-01, 2.4610e-03, - 2DIAGNOSTIC, 18, -6.743693404085e-01, 3.503197171984e-04, 2.8144e-01, 2.5210e-03, - 2DIAGNOSTIC, 19, -6.746408524082e-01, 3.103205512561e-04, 2.8389e-01, 2.4500e-03, - 2DIAGNOSTIC, 20, -6.746899376066e-01, 2.446902763954e-04, 2.9137e-01, 7.4811e-03, - 2DIAGNOSTIC, 21, -6.746899365169e-01, 1.729626720817e-04, 2.9352e-01, 2.1501e-03, - 2DIAGNOSTIC, 22, -6.746899392675e-01, 1.014159257454e-04, 2.9569e-01, 2.1720e-03, - 2DIAGNOSTIC, 23, -6.746899439180e-01, 4.425313940435e-05, 2.9784e-01, 2.1510e-03, - 2DIAGNOSTIC, 24, -6.746899517802e-01, 1.867281664636e-05, 2.9996e-01, 2.1169e-03, - 2DIAGNOSTIC, 25, -6.746899650701e-01, 1.586293609649e-05, 3.0206e-01, 2.1021e-03, - 2DIAGNOSTIC, 26, -6.746899875292e-01, 1.222353574082e-05, 3.0418e-01, 2.1188e-03, - 2DIAGNOSTIC, 27, -6.746900254670e-01, 6.901667830801e-06, 3.0643e-01, 2.2471e-03, - 2DIAGNOSTIC, 28, -6.746900895051e-01, 1.891992049377e-06, 3.0868e-01, 2.2500e-03, - 2DIAGNOSTIC, 29, -6.746901974669e-01, 1.111349005031e-06, 3.1089e-01, 2.2192e-03, - 2DIAGNOSTIC, 30, -6.746903791033e-01, 1.078750680839e-06, 3.1308e-01, 2.1820e-03, - 2DIAGNOSTIC, 31, -6.746906836282e-01, 1.051291498161e-06, 3.1525e-01, 2.1780e-03, - 2DIAGNOSTIC, 32, -6.746911912116e-01, 1.030481102976e-06, 3.1747e-01, 2.2130e-03, - 2DIAGNOSTIC, 33, -6.746920284916e-01, 1.018761115912e-06, 3.1964e-01, 2.1770e-03, - 2DIAGNOSTIC, 34, -6.746933913075e-01, 1.019970842675e-06, 3.2186e-01, 2.2180e-03, - 2DIAGNOSTIC, 35, -6.746955626133e-01, 1.039756359511e-06, 3.2402e-01, 2.1558e-03, - 2DIAGNOSTIC, 36, -6.746992740391e-01, 1.089956762918e-06, 3.2623e-01, 2.2109e-03, - 2DIAGNOSTIC, 37, -6.747054655948e-01, 1.188773530714e-06, 3.2849e-01, 2.2640e-03, - 2DIAGNOSTIC, 38, -6.747140237098e-01, 1.346267662052e-06, 3.3081e-01, 2.3131e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.159463201788e-01, 1.797693134862e+308, 3.9742e-01, 6.6613e-02, - 2DIAGNOSTIC, 2, -5.161542878614e-01, 1.797693134862e+308, 4.0924e-01, 1.1818e-02, - 2DIAGNOSTIC, 3, -5.165196873432e-01, 1.797693134862e+308, 4.2022e-01, 1.0983e-02, - 2DIAGNOSTIC, 4, -5.171606611132e-01, 1.797693134862e+308, 4.3077e-01, 1.0546e-02, - 2DIAGNOSTIC, 5, -5.182606155665e-01, 1.797693134862e+308, 4.4120e-01, 1.0433e-02, - 2DIAGNOSTIC, 6, -5.193633609338e-01, 1.797693134862e+308, 4.5314e-01, 1.1943e-02, - 2DIAGNOSTIC, 7, -5.198557599974e-01, 1.797693134862e+308, 4.6651e-01, 1.3364e-02, - 2DIAGNOSTIC, 8, -5.202432020086e-01, 1.797693134862e+308, 4.7746e-01, 1.0952e-02, - 2DIAGNOSTIC, 9, -5.205949544517e-01, 1.797693134862e+308, 4.8826e-01, 1.0801e-02, - 2DIAGNOSTIC, 10, -5.211495416612e-01, 7.232557397653e-04, 5.0043e-01, 1.2170e-02, - 2DIAGNOSTIC, 11, -5.218170046557e-01, 6.565421137651e-04, 5.1250e-01, 1.2071e-02, - 2DIAGNOSTIC, 12, -5.219259595545e-01, 5.566310338562e-04, 5.2376e-01, 1.1264e-02, - 2DIAGNOSTIC, 13, -5.220534091125e-01, 4.436321280060e-04, 5.3900e-01, 1.5233e-02, - 2DIAGNOSTIC, 14, -5.224138341916e-01, 3.454772140234e-04, 5.5345e-01, 1.4453e-02, - 2DIAGNOSTIC, 15, -5.224320212641e-01, 2.684781159039e-04, 5.6493e-01, 1.1478e-02, - 2DIAGNOSTIC, 16, -5.224665425063e-01, 2.151949315690e-04, 5.8124e-01, 1.6308e-02, - 2DIAGNOSTIC, 17, -5.225013298542e-01, 1.656138852882e-04, 5.9190e-01, 1.0666e-02, - 2DIAGNOSTIC, 18, -5.226244138602e-01, 1.220386073966e-04, 6.0255e-01, 1.0649e-02, - 2DIAGNOSTIC, 19, -5.228109177354e-01, 8.696270951990e-05, 6.1312e-01, 1.0570e-02, - 2DIAGNOSTIC, 20, -5.230109461476e-01, 6.752133060553e-05, 6.2449e-01, 1.1371e-02, - 2DIAGNOSTIC, 21, -5.231274210974e-01, 6.423280404389e-05, 6.3775e-01, 1.3260e-02, - 2DIAGNOSTIC, 22, -5.231969551770e-01, 5.986624533471e-05, 6.5146e-01, 1.3708e-02, - 2DIAGNOSTIC, 23, -5.232130642506e-01, 5.359065189772e-05, 6.6465e-01, 1.3185e-02, - 2DIAGNOSTIC, 24, -5.232954487983e-01, 5.297700196778e-05, 6.7955e-01, 1.4905e-02, - 2DIAGNOSTIC, 25, -5.233657930024e-01, 4.940569081369e-05, 6.9445e-01, 1.4900e-02, - 2DIAGNOSTIC, 26, -5.233684170563e-01, 4.235934172009e-05, 7.0604e-01, 1.1591e-02, - 2DIAGNOSTIC, 27, -5.233777843960e-01, 3.290426407814e-05, 7.1857e-01, 1.2527e-02, - 2DIAGNOSTIC, 28, -5.233876059231e-01, 2.370477365241e-05, 7.3181e-01, 1.3238e-02, - 2DIAGNOSTIC, 29, -5.233639590158e-01, 1.597825406923e-05, 7.4313e-01, 1.1322e-02, - 2DIAGNOSTIC, 30, -5.233726190124e-01, 1.110311103462e-05, 7.5485e-01, 1.1723e-02, - 2DIAGNOSTIC, 31, -5.233769239247e-01, 7.696293511467e-06, 7.6648e-01, 1.1631e-02, - 2DIAGNOSTIC, 32, -5.234005548457e-01, 5.476286885867e-06, 7.7956e-01, 1.3078e-02, - 2DIAGNOSTIC, 33, -5.233951795855e-01, 3.109649458009e-06, 7.9419e-01, 1.4627e-02, - 2DIAGNOSTIC, 34, -5.234249303548e-01, 2.460261431369e-06, 8.0472e-01, 1.0535e-02, - 2DIAGNOSTIC, 35, -5.234078916867e-01, 2.526949921772e-06, 8.1979e-01, 1.5070e-02, - 2DIAGNOSTIC, 36, -5.234364499556e-01, 2.908572106344e-06, 8.3225e-01, 1.2457e-02, - 2DIAGNOSTIC, 37, -5.234267394040e-01, 3.052048014780e-06, 8.4717e-01, 1.4921e-02, - 2DIAGNOSTIC, 38, -5.234267545579e-01, 3.135980535515e-06, 8.6061e-01, 1.3435e-02, - 2DIAGNOSTIC, 39, -5.234267564084e-01, 2.668250360251e-06, 8.7311e-01, 1.2505e-02, - 2DIAGNOSTIC, 40, -5.234267567412e-01, 2.165211847181e-06, 8.8960e-01, 1.6487e-02, - 2DIAGNOSTIC, 41, -5.234267567982e-01, 1.604976727056e-06, 9.2384e-01, 3.4241e-02, - 2DIAGNOSTIC, 42, -5.234267567982e-01, 1.302661457786e-06, 9.3551e-01, 1.1670e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.342444235002e-01, 1.797693134862e+308, 1.1513e+00, 2.1582e-01, - Elapsed time (stage 0): 1.1818e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.956294711839e-01, 1.797693134862e+308, 4.3142e-02, 4.3142e-02, - 2DIAGNOSTIC, 2, -9.976278823828e-01, 1.797693134862e+308, 4.4593e-02, 1.4510e-03, - 2DIAGNOSTIC, 3, -9.987339266291e-01, 1.797693134862e+308, 4.5797e-02, 1.2040e-03, - 2DIAGNOSTIC, 4, -1.001552973880e+00, 1.797693134862e+308, 4.7216e-02, 1.4191e-03, - 2DIAGNOSTIC, 5, -1.004981737954e+00, 1.797693134862e+308, 4.8497e-02, 1.2810e-03, - 2DIAGNOSTIC, 6, -1.008490788327e+00, 1.797693134862e+308, 4.9996e-02, 1.4989e-03, - 2DIAGNOSTIC, 7, -1.011718127271e+00, 1.797693134862e+308, 5.1258e-02, 1.2622e-03, - 2DIAGNOSTIC, 8, -1.011691021356e+00, 1.797693134862e+308, 5.2521e-02, 1.2631e-03, - 2DIAGNOSTIC, 9, -1.016566128364e+00, 1.797693134862e+308, 5.4013e-02, 1.4920e-03, - 2DIAGNOSTIC, 10, -1.021176464320e+00, 1.598479362954e-03, 5.5487e-02, 1.4739e-03, - 2DIAGNOSTIC, 11, -1.036028811626e+00, 1.851167529163e-03, 5.7668e-02, 2.1811e-03, - 2DIAGNOSTIC, 12, -1.039664690008e+00, 2.019663018075e-03, 5.9363e-02, 1.6949e-03, - 2DIAGNOSTIC, 13, -1.042025665717e+00, 2.057192529080e-03, 6.1284e-02, 1.9209e-03, - 2DIAGNOSTIC, 14, -1.042643948292e+00, 1.973847281481e-03, 6.2750e-02, 1.4658e-03, - 2DIAGNOSTIC, 15, -1.042613287445e+00, 1.782766244028e-03, 6.4239e-02, 1.4889e-03, - 2DIAGNOSTIC, 16, -1.042818290994e+00, 1.513434499600e-03, 6.5915e-02, 1.6761e-03, - 2DIAGNOSTIC, 17, -1.042781209579e+00, 1.189957689564e-03, 6.7599e-02, 1.6840e-03, - 2DIAGNOSTIC, 18, -1.043797316215e+00, 8.103804429619e-04, 6.9083e-02, 1.4842e-03, - 2DIAGNOSTIC, 19, -1.043795295939e+00, 4.688272350295e-04, 7.0786e-02, 1.7030e-03, - 2DIAGNOSTIC, 20, -1.045576055731e+00, 2.027101418000e-04, 7.2510e-02, 1.7240e-03, - 2DIAGNOSTIC, 21, -1.044832004933e+00, 1.285521230908e-04, 7.4040e-02, 1.5299e-03, - 2DIAGNOSTIC, 22, -1.046856125048e+00, 1.203620431510e-04, 7.5523e-02, 1.4830e-03, - 2DIAGNOSTIC, 23, -1.072976554433e+00, 4.430269930313e-04, 7.7037e-02, 1.5142e-03, - 2DIAGNOSTIC, 24, -1.088386047200e+00, 8.715022995068e-04, 7.9446e-02, 2.4090e-03, - 2DIAGNOSTIC, 25, -1.091416995596e+00, 1.214001165006e-03, 8.1619e-02, 2.1729e-03, - 2DIAGNOSTIC, 26, -1.096194990763e+00, 1.472917430038e-03, 8.3325e-02, 1.7061e-03, - 2DIAGNOSTIC, 27, -1.106904133377e+00, 1.681051533622e-03, 8.5046e-02, 1.7209e-03, - 2DIAGNOSTIC, 28, -1.110658173707e+00, 1.754807706509e-03, 8.7623e-02, 2.5771e-03, - 2DIAGNOSTIC, 29, -1.110065492993e+00, 1.649573039047e-03, 8.9808e-02, 2.1842e-03, - 2DIAGNOSTIC, 30, -1.113024158033e+00, 1.444324934296e-03, 9.1984e-02, 2.1760e-03, - 2DIAGNOSTIC, 31, -1.117315627304e+00, 1.150716962506e-03, 9.4395e-02, 2.4118e-03, - 2DIAGNOSTIC, 32, -1.120243515039e+00, 8.027659795308e-04, 9.6314e-02, 1.9190e-03, - 2DIAGNOSTIC, 33, -1.132280515876e+00, 7.100128263585e-04, 9.8744e-02, 2.4300e-03, - 2DIAGNOSTIC, 34, -1.137969506801e+00, 7.221299880991e-04, 1.0056e-01, 1.8120e-03, - 2DIAGNOSTIC, 35, -1.138606295551e+00, 6.934311292150e-04, 1.0206e-01, 1.5020e-03, - 2DIAGNOSTIC, 36, -1.140455641245e+00, 6.491751025591e-04, 1.0381e-01, 1.7471e-03, - 2DIAGNOSTIC, 37, -1.143971134203e+00, 6.477965037053e-04, 1.0548e-01, 1.6780e-03, - 2DIAGNOSTIC, 38, -1.145316715432e+00, 6.195556680284e-04, 1.0715e-01, 1.6708e-03, - 2DIAGNOSTIC, 39, -1.144672878178e+00, 5.249325530548e-04, 1.0862e-01, 1.4699e-03, - 2DIAGNOSTIC, 40, -1.143954538599e+00, 4.014692999968e-04, 1.1008e-01, 1.4570e-03, - 2DIAGNOSTIC, 41, -1.144820249526e+00, 2.805946021261e-04, 1.1178e-01, 1.6999e-03, - 2DIAGNOSTIC, 42, -1.144520058901e+00, 1.533769604379e-04, 1.1348e-01, 1.6940e-03, - 2DIAGNOSTIC, 43, -1.145062733517e+00, 9.441658216574e-05, 1.1532e-01, 1.8411e-03, - 2DIAGNOSTIC, 44, -1.145214284394e+00, 6.484515268087e-05, 1.1678e-01, 1.4601e-03, - 2DIAGNOSTIC, 45, -1.145353381501e+00, 3.521876371393e-05, 1.1847e-01, 1.6971e-03, - 2DIAGNOSTIC, 46, -1.145409428631e+00, 1.401524956737e-05, 1.1994e-01, 1.4710e-03, - 2DIAGNOSTIC, 47, -1.146879341388e+00, 2.010413721707e-05, 1.2208e-01, 2.1360e-03, - 2DIAGNOSTIC, 48, -1.148457952997e+00, 3.995106033475e-05, 1.2356e-01, 1.4751e-03, - 2DIAGNOSTIC, 49, -1.148537900268e+00, 5.213217221596e-05, 1.2524e-01, 1.6890e-03, - 2DIAGNOSTIC, 50, -1.148607845195e+00, 5.556565463637e-05, 1.2671e-01, 1.4610e-03, - 2DIAGNOSTIC, 51, -1.148677848814e+00, 5.858495030578e-05, 1.2818e-01, 1.4720e-03, - 2DIAGNOSTIC, 52, -1.149084944448e+00, 5.625538579537e-05, 1.3031e-01, 2.1360e-03, - 2DIAGNOSTIC, 53, -1.149202791440e+00, 5.172793070162e-05, 1.3178e-01, 1.4639e-03, - 2DIAGNOSTIC, 54, -1.149322896709e+00, 4.386675042254e-05, 1.3348e-01, 1.7061e-03, - 2DIAGNOSTIC, 55, -1.149476129560e+00, 3.375611350234e-05, 1.3497e-01, 1.4849e-03, - 2DIAGNOSTIC, 56, -1.149070250742e+00, 1.909744737258e-05, 1.3736e-01, 2.3870e-03, - 2DIAGNOSTIC, 57, -1.149694185466e+00, 1.260318199886e-05, 1.3880e-01, 1.4422e-03, - 2DIAGNOSTIC, 58, -1.149985098554e+00, 1.346210408268e-05, 1.4027e-01, 1.4720e-03, - 2DIAGNOSTIC, 59, -1.150256322534e+00, 1.457677691558e-05, 1.4219e-01, 1.9190e-03, - 2DIAGNOSTIC, 60, -1.150411861943e+00, 1.532140774840e-05, 1.4365e-01, 1.4639e-03, - 2DIAGNOSTIC, 61, -1.150803496061e+00, 1.658022266954e-05, 1.4538e-01, 1.7290e-03, - 2DIAGNOSTIC, 62, -1.151135771195e+00, 1.928470313128e-05, 1.4757e-01, 2.1911e-03, - 2DIAGNOSTIC, 63, -1.151417166793e+00, 2.165979300504e-05, 1.4905e-01, 1.4770e-03, - 2DIAGNOSTIC, 64, -1.151616408500e+00, 2.320281432925e-05, 1.5049e-01, 1.4451e-03, - 2DIAGNOSTIC, 65, -1.152064447143e+00, 2.499178378999e-05, 1.5198e-01, 1.4830e-03, - 2DIAGNOSTIC, 66, -1.153641056886e+00, 2.885471687060e-05, 1.5392e-01, 1.9400e-03, - 2DIAGNOSTIC, 67, -1.153834198170e+00, 3.283389175763e-05, 1.5588e-01, 1.9670e-03, - 2DIAGNOSTIC, 68, -1.153913707259e+00, 3.503652772141e-05, 1.5760e-01, 1.7118e-03, - 2DIAGNOSTIC, 69, -1.154188816813e+00, 3.598014160896e-05, 1.5906e-01, 1.4641e-03, - 2DIAGNOSTIC, 70, -1.154551627154e+00, 3.530681901279e-05, 1.6077e-01, 1.7118e-03, - 2DIAGNOSTIC, 71, -1.154830593599e+00, 3.359155169974e-05, 1.6250e-01, 1.7288e-03, - 2DIAGNOSTIC, 72, -1.155894036921e+00, 3.369540939271e-05, 1.6419e-01, 1.6892e-03, - 2DIAGNOSTIC, 73, -1.156960603459e+00, 3.534358274853e-05, 1.6593e-01, 1.7378e-03, - 2DIAGNOSTIC, 74, -1.157122281149e+00, 3.479882616741e-05, 1.6765e-01, 1.7262e-03, - 2DIAGNOSTIC, 75, -1.157371019916e+00, 3.325889676432e-05, 1.6932e-01, 1.6649e-03, - 2DIAGNOSTIC, 76, -1.157676311753e+00, 3.495752511063e-05, 1.7105e-01, 1.7269e-03, - 2DIAGNOSTIC, 77, -1.159125888419e+00, 3.868679503841e-05, 1.7297e-01, 1.9271e-03, - 2DIAGNOSTIC, 78, -1.159250180466e+00, 3.911235546275e-05, 1.7448e-01, 1.5109e-03, - 2DIAGNOSTIC, 79, -1.159418319921e+00, 3.729972030191e-05, 1.7620e-01, 1.7171e-03, - 2DIAGNOSTIC, 80, -1.159453180039e+00, 3.336404997847e-05, 1.7812e-01, 1.9140e-03, - 2DIAGNOSTIC, 81, -1.159462125038e+00, 2.718387020144e-05, 1.7982e-01, 1.7080e-03, - 2DIAGNOSTIC, 82, -1.159480059929e+00, 2.179949598088e-05, 1.8128e-01, 1.4579e-03, - 2DIAGNOSTIC, 83, -1.159529188835e+00, 1.790590083639e-05, 1.8276e-01, 1.4811e-03, - 2DIAGNOSTIC, 84, -1.159572412372e+00, 1.308886666102e-05, 1.8423e-01, 1.4641e-03, - 2DIAGNOSTIC, 85, -1.159645240966e+00, 8.157070258991e-06, 1.8568e-01, 1.4510e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.479531022279e-01, 1.797693134862e+308, 2.3012e-01, 4.4442e-02, - 2DIAGNOSTIC, 2, -7.482637662574e-01, 1.797693134862e+308, 2.3323e-01, 3.1059e-03, - 2DIAGNOSTIC, 3, -7.495602490678e-01, 1.797693134862e+308, 2.3655e-01, 3.3221e-03, - 2DIAGNOSTIC, 4, -7.519221291687e-01, 1.797693134862e+308, 2.3948e-01, 2.9359e-03, - 2DIAGNOSTIC, 5, -7.559912325552e-01, 1.797693134862e+308, 2.4182e-01, 2.3410e-03, - 2DIAGNOSTIC, 6, -7.591681734755e-01, 1.797693134862e+308, 2.4415e-01, 2.3239e-03, - 2DIAGNOSTIC, 7, -7.627909610208e-01, 1.797693134862e+308, 2.4677e-01, 2.6181e-03, - 2DIAGNOSTIC, 8, -7.646003979302e-01, 1.797693134862e+308, 2.4973e-01, 2.9640e-03, - 2DIAGNOSTIC, 9, -7.650240181794e-01, 1.797693134862e+308, 2.5205e-01, 2.3241e-03, - 2DIAGNOSTIC, 10, -7.662781867178e-01, 1.847198000682e-03, 2.5466e-01, 2.6069e-03, - 2DIAGNOSTIC, 11, -7.671964640823e-01, 1.616881008359e-03, 2.5721e-01, 2.5458e-03, - 2DIAGNOSTIC, 12, -7.686228736215e-01, 1.333985151057e-03, 2.6009e-01, 2.8820e-03, - 2DIAGNOSTIC, 13, -7.698690189664e-01, 1.047444490332e-03, 2.6357e-01, 3.4800e-03, - 2DIAGNOSTIC, 14, -7.702587348643e-01, 7.798332718631e-04, 2.6646e-01, 2.8911e-03, - 2DIAGNOSTIC, 15, -7.705739312969e-01, 5.860989285125e-04, 2.6965e-01, 3.1862e-03, - 2DIAGNOSTIC, 16, -7.708681360966e-01, 4.423036844199e-04, 2.7252e-01, 2.8720e-03, - 2DIAGNOSTIC, 17, -7.712090877831e-01, 3.607790303625e-04, 2.7541e-01, 2.8880e-03, - 2DIAGNOSTIC, 18, -7.712919933300e-01, 2.942176216255e-04, 2.7829e-01, 2.8801e-03, - 2DIAGNOSTIC, 19, -7.714066633134e-01, 2.180521942381e-04, 2.8170e-01, 3.4091e-03, - 2DIAGNOSTIC, 20, -7.715628642277e-01, 1.558491203119e-04, 2.8651e-01, 4.8189e-03, - 2DIAGNOSTIC, 21, -7.715313647637e-01, 1.004650836522e-04, 2.9034e-01, 3.8280e-03, - 2DIAGNOSTIC, 22, -7.714157660926e-01, 6.260188013601e-05, 2.9339e-01, 3.0482e-03, - 2DIAGNOSTIC, 23, -7.714380901036e-01, 4.283467268102e-05, 2.9610e-01, 2.7139e-03, - 2DIAGNOSTIC, 24, -7.716124022772e-01, 2.949386478882e-05, 2.9889e-01, 2.7862e-03, - 2DIAGNOSTIC, 25, -7.715772886434e-01, 1.856077715541e-05, 3.0155e-01, 2.6591e-03, - 2DIAGNOSTIC, 26, -7.716290930060e-01, 1.174782748004e-05, 3.0454e-01, 2.9891e-03, - 2DIAGNOSTIC, 27, -7.716209413283e-01, 9.089611358537e-06, 3.0738e-01, 2.8400e-03, - 2DIAGNOSTIC, 28, -7.717771629316e-01, 9.016632492399e-06, 3.0992e-01, 2.5370e-03, - 2DIAGNOSTIC, 29, -7.718555735408e-01, 1.050429672682e-05, 3.1378e-01, 3.8621e-03, - 2DIAGNOSTIC, 30, -7.718918177479e-01, 1.337163153452e-05, 3.1656e-01, 2.7771e-03, - 2DIAGNOSTIC, 31, -7.719666503888e-01, 1.550420859290e-05, 3.1994e-01, 3.3879e-03, - 2DIAGNOSTIC, 32, -7.719931734385e-01, 1.509764768461e-05, 3.2237e-01, 2.4319e-03, - 2DIAGNOSTIC, 33, -7.721067856039e-01, 1.482986663143e-05, 3.2471e-01, 2.3341e-03, - 2DIAGNOSTIC, 34, -7.721615720234e-01, 1.573448859743e-05, 3.2731e-01, 2.6019e-03, - 2DIAGNOSTIC, 35, -7.722046861529e-01, 1.526648002182e-05, 3.2963e-01, 2.3229e-03, - 2DIAGNOSTIC, 36, -7.721830095162e-01, 1.380274641681e-05, 3.3221e-01, 2.5780e-03, - 2DIAGNOSTIC, 37, -7.722601277773e-01, 1.185934430799e-05, 3.3480e-01, 2.5921e-03, - 2DIAGNOSTIC, 38, -7.722338185347e-01, 1.019319723142e-05, 3.3737e-01, 2.5711e-03, - 2DIAGNOSTIC, 39, -7.722099977285e-01, 8.241176367777e-06, 3.3970e-01, 2.3270e-03, - 2DIAGNOSTIC, 40, -7.721029139174e-01, 5.031590830953e-06, 3.4203e-01, 2.3260e-03, - 2DIAGNOSTIC, 41, -7.721526122778e-01, 2.733727009971e-06, 3.4434e-01, 2.3160e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.775406590736e-01, 1.797693134862e+308, 4.0584e-01, 6.1493e-02, - 2DIAGNOSTIC, 2, -5.779231520071e-01, 1.797693134862e+308, 4.1806e-01, 1.2224e-02, - 2DIAGNOSTIC, 3, -5.784940946424e-01, 1.797693134862e+308, 4.3152e-01, 1.3463e-02, - 2DIAGNOSTIC, 4, -5.793940483856e-01, 1.797693134862e+308, 4.4290e-01, 1.1381e-02, - 2DIAGNOSTIC, 5, -5.805972810629e-01, 1.797693134862e+308, 4.5438e-01, 1.1476e-02, - 2DIAGNOSTIC, 6, -5.820167054179e-01, 1.797693134862e+308, 4.6585e-01, 1.1472e-02, - 2DIAGNOSTIC, 7, -5.839320043930e-01, 1.797693134862e+308, 4.7739e-01, 1.1538e-02, - 2DIAGNOSTIC, 8, -5.862393446574e-01, 1.797693134862e+308, 4.9030e-01, 1.2908e-02, - 2DIAGNOSTIC, 9, -5.874632510467e-01, 1.797693134862e+308, 5.0772e-01, 1.7423e-02, - 2DIAGNOSTIC, 10, -5.876252087328e-01, 1.282834764423e-03, 5.1946e-01, 1.1738e-02, - 2DIAGNOSTIC, 11, -5.881336887930e-01, 1.191443379749e-03, 5.3108e-01, 1.1618e-02, - 2DIAGNOSTIC, 12, -5.890645757833e-01, 1.061121218302e-03, 5.4275e-01, 1.1671e-02, - 2DIAGNOSTIC, 13, -5.893479107624e-01, 8.853808918024e-04, 5.5592e-01, 1.3176e-02, - 2DIAGNOSTIC, 14, -5.896119138960e-01, 6.951046158147e-04, 5.6924e-01, 1.3317e-02, - 2DIAGNOSTIC, 15, -5.898122591387e-01, 5.134082460379e-04, 5.8360e-01, 1.4356e-02, - 2DIAGNOSTIC, 16, -5.898878707468e-01, 3.526281491154e-04, 5.9652e-01, 1.2927e-02, - 2DIAGNOSTIC, 17, -5.899811372220e-01, 2.342455310621e-04, 6.0761e-01, 1.1087e-02, - 2DIAGNOSTIC, 18, -5.900106465806e-01, 1.698143009621e-04, 6.2007e-01, 1.2458e-02, - 2DIAGNOSTIC, 19, -5.900302738655e-01, 1.287178258381e-04, 6.3251e-01, 1.2442e-02, - 2DIAGNOSTIC, 20, -5.900342660338e-01, 8.393520395159e-05, 6.4705e-01, 1.4539e-02, - 2DIAGNOSTIC, 21, -5.900272839482e-01, 4.688111076856e-05, 6.5924e-01, 1.2194e-02, - 2DIAGNOSTIC, 22, -5.900353436341e-01, 2.960720635962e-05, 6.7320e-01, 1.3951e-02, - 2DIAGNOSTIC, 23, -5.900346818594e-01, 1.706076032824e-05, 6.8696e-01, 1.3763e-02, - 2DIAGNOSTIC, 24, -5.900390473884e-01, 9.439720157170e-06, 7.0118e-01, 1.4224e-02, - 2DIAGNOSTIC, 25, -5.900351970652e-01, 5.465163772152e-06, 7.1470e-01, 1.3521e-02, - 2DIAGNOSTIC, 26, -5.900399180720e-01, 2.867797332697e-06, 7.2680e-01, 1.2094e-02, - 2DIAGNOSTIC, 27, -5.900408200315e-01, 1.984794401368e-06, 7.3973e-01, 1.2933e-02, - 2DIAGNOSTIC, 28, -5.900463278342e-01, 1.683124751246e-06, 7.5148e-01, 1.1752e-02, - 2DIAGNOSTIC, 29, -5.900589120519e-01, 1.885663045258e-06, 7.6488e-01, 1.3396e-02, - 2DIAGNOSTIC, 30, -5.900693277587e-01, 2.233620168685e-06, 7.7748e-01, 1.2605e-02, - 2DIAGNOSTIC, 31, -5.900806489793e-01, 2.511606337956e-06, 7.9266e-01, 1.5179e-02, - 2DIAGNOSTIC, 32, -5.900810315253e-01, 2.758914894853e-06, 8.0404e-01, 1.1379e-02, - 2DIAGNOSTIC, 33, -5.900821795342e-01, 2.832178768980e-06, 8.1542e-01, 1.1377e-02, - 2DIAGNOSTIC, 34, -5.901057948918e-01, 3.123156622965e-06, 8.2905e-01, 1.3633e-02, - 2DIAGNOSTIC, 35, -5.901123983231e-01, 3.214811771932e-06, 8.4239e-01, 1.3334e-02, - 2DIAGNOSTIC, 36, -5.901349444382e-01, 3.450427474006e-06, 8.5347e-01, 1.1086e-02, - 2DIAGNOSTIC, 37, -5.902132751590e-01, 4.463788565650e-06, 8.6602e-01, 1.2553e-02, - 2DIAGNOSTIC, 38, -5.902053100632e-01, 5.023738874423e-06, 8.8051e-01, 1.4490e-02, - 2DIAGNOSTIC, 39, -5.902561442794e-01, 5.954095803326e-06, 9.1818e-01, 3.7666e-02, - 2DIAGNOSTIC, 40, -5.902561437971e-01, 6.463528392071e-06, 9.2973e-01, 1.1548e-02, - 2DIAGNOSTIC, 41, -5.902561492703e-01, 6.542968905895e-06, 9.4082e-01, 1.1087e-02, - 2DIAGNOSTIC, 42, -5.902561585222e-01, 6.070607933513e-06, 9.5196e-01, 1.1147e-02, - 2DIAGNOSTIC, 43, -5.902561741566e-01, 5.119515463659e-06, 9.6306e-01, 1.1096e-02, - 2DIAGNOSTIC, 44, -5.902562005648e-01, 4.058904212009e-06, 9.7414e-01, 1.1081e-02, - 2DIAGNOSTIC, 45, -5.902528197338e-01, 2.761155527633e-06, 9.8537e-01, 1.1231e-02, - 2DIAGNOSTIC, 46, -5.902528949558e-01, 1.546407840277e-06, 9.9687e-01, 1.1495e-02, - 2DIAGNOSTIC, 47, -5.902530214311e-01, 1.116543239286e-06, 1.0085e+00, 1.1667e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.912821404053e-01, 1.797693134862e+308, 1.2013e+00, 1.9281e-01, - Elapsed time (stage 1): 1.2270e+00 - - -Total elapsed time: 2.4101e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:12:58 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 26 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 78 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 87.66% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 87.66% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[ 9974 2560 10286 354 1648 0 0 1926 0 7553 187 0 - 201 1512 369 2043 3017 0 860 251 908 347 1062 429 - 0 0] -[190406 28617 12973 16559 14983 9622 7841 10138 11580 5405 - 7468 3057 5490 5355 3283 7072 552 1383 890 382 - 440 219 367 548 1075 159] -[14122 0 267 0 562 0 10078 0 4551 0 745 0 - 3938 0 11876 0 216 0 0 174 3654 12252 0 7617 - 0 0] -[ 319 7882 4482 2595 3359 4474 192222 8880 26438 587 - 0 1764 0 1108 171 2286 11409 4939 5353 10801 - 0 934 6772 445 645 4574] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:21:31 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:21:37 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:21 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:21 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:21 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:31 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:34 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC007 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:25:52 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:26:16 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:28:06 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:28:07 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:29:23 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:29:23 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5632af2d7d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.2585, 126.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5632af14e730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f07afdc7010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5632af2db020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.592, 68.3168, -110.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5632af2e10c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f07ac708010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5632af2f1840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.2585, 126.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5632af2dd890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f07a7a34010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x5632af2f53e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.592, 68.3168, -110.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5632af2e4130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f07a4375010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.387013404435e-01, 1.797693134862e+308, 2.3328e-01, 2.3328e-01, - 2DIAGNOSTIC, 2, -4.400221408382e-01, 1.797693134862e+308, 2.3475e-01, 1.4691e-03, - 2DIAGNOSTIC, 3, -4.408530221261e-01, 1.797693134862e+308, 2.3607e-01, 1.3261e-03, - 2DIAGNOSTIC, 4, -4.413194293047e-01, 1.797693134862e+308, 2.3759e-01, 1.5140e-03, - 2DIAGNOSTIC, 5, -4.417655310586e-01, 1.797693134862e+308, 2.3909e-01, 1.5039e-03, - 2DIAGNOSTIC, 6, -4.440901131901e-01, 1.797693134862e+308, 2.4086e-01, 1.7662e-03, - 2DIAGNOSTIC, 7, -4.469698175964e-01, 1.797693134862e+308, 2.4236e-01, 1.5049e-03, - 2DIAGNOSTIC, 8, -4.704561413179e-01, 1.797693134862e+308, 2.4484e-01, 2.4810e-03, - 2DIAGNOSTIC, 9, -4.742955536426e-01, 1.797693134862e+308, 2.4653e-01, 1.6890e-03, - 2DIAGNOSTIC, 10, -4.749320772199e-01, 5.669298757107e-03, 2.4823e-01, 1.6990e-03, - 2DIAGNOSTIC, 11, -4.753522363696e-01, 5.820907918473e-03, 2.4985e-01, 1.6129e-03, - 2DIAGNOSTIC, 12, -4.762414565023e-01, 5.535492850687e-03, 2.5173e-01, 1.8899e-03, - 2DIAGNOSTIC, 13, -4.761486642286e-01, 4.814210116550e-03, 2.5333e-01, 1.5981e-03, - 2DIAGNOSTIC, 14, -4.772533602450e-01, 3.829914473615e-03, 2.5499e-01, 1.6570e-03, - 2DIAGNOSTIC, 15, -4.782101883085e-01, 2.703450646053e-03, 2.5688e-01, 1.8899e-03, - 2DIAGNOSTIC, 16, -4.783413272944e-01, 1.579645017288e-03, 2.5904e-01, 2.1610e-03, - 2DIAGNOSTIC, 17, -4.781780978603e-01, 5.241675240578e-04, 2.6145e-01, 2.4109e-03, - 2DIAGNOSTIC, 18, -4.782346861907e-01, 3.421101941181e-04, 2.6339e-01, 1.9410e-03, - 2DIAGNOSTIC, 19, -4.785528510639e-01, 2.817495052841e-04, 2.6509e-01, 1.6971e-03, - 2DIAGNOSTIC, 20, -4.786011773603e-01, 2.215213749250e-04, 2.6678e-01, 1.6918e-03, - 2DIAGNOSTIC, 21, -4.787298383056e-01, 1.624060417753e-04, 2.6851e-01, 1.7300e-03, - 2DIAGNOSTIC, 22, -4.798260701170e-01, 1.498641881089e-04, 2.7022e-01, 1.7090e-03, - 2DIAGNOSTIC, 23, -4.814263509948e-01, 1.632084345110e-04, 2.7255e-01, 2.3270e-03, - 2DIAGNOSTIC, 24, -4.816889548650e-01, 1.932805344432e-04, 2.7413e-01, 1.5869e-03, - 2DIAGNOSTIC, 25, -4.821632813775e-01, 2.381974865780e-04, 2.7574e-01, 1.6060e-03, - 2DIAGNOSTIC, 26, -4.826202012655e-01, 2.714816312746e-04, 2.7736e-01, 1.6148e-03, - 2DIAGNOSTIC, 27, -4.869281144700e-01, 3.691745095714e-04, 2.7945e-01, 2.0912e-03, - 2DIAGNOSTIC, 28, -4.866349711958e-01, 4.166594533797e-04, 2.8106e-01, 1.6179e-03, - 2DIAGNOSTIC, 29, -4.903486928201e-01, 5.069960693251e-04, 2.8290e-01, 1.8401e-03, - 2DIAGNOSTIC, 30, -4.924979193358e-01, 5.871182242962e-04, 2.8525e-01, 2.3429e-03, - 2DIAGNOSTIC, 31, -4.946278523536e-01, 6.491809032346e-04, 2.8709e-01, 1.8461e-03, - 2DIAGNOSTIC, 32, -4.947820817858e-01, 6.678034882561e-04, 2.8898e-01, 1.8830e-03, - 2DIAGNOSTIC, 33, -4.957252056138e-01, 6.690098513890e-04, 2.9083e-01, 1.8489e-03, - 2DIAGNOSTIC, 34, -4.979034914027e-01, 6.498158348038e-04, 2.9266e-01, 1.8380e-03, - 2DIAGNOSTIC, 35, -4.980839561573e-01, 5.801625176514e-04, 2.9428e-01, 1.6189e-03, - 2DIAGNOSTIC, 36, -4.986720365533e-01, 4.756589168885e-04, 2.9617e-01, 1.8861e-03, - 2DIAGNOSTIC, 37, -4.991118274553e-01, 4.100990525768e-04, 2.9776e-01, 1.5888e-03, - 2DIAGNOSTIC, 38, -5.002873411224e-01, 3.219093372776e-04, 2.9939e-01, 1.6291e-03, - 2DIAGNOSTIC, 39, -5.034524745479e-01, 3.114743542169e-04, 3.0128e-01, 1.8890e-03, - 2DIAGNOSTIC, 40, -5.120810994355e-01, 4.301551017522e-04, 3.0312e-01, 1.8489e-03, - 2DIAGNOSTIC, 41, -5.196580051509e-01, 6.396725373828e-04, 3.0594e-01, 2.8131e-03, - 2DIAGNOSTIC, 42, -5.201029295123e-01, 7.849103452504e-04, 3.0751e-01, 1.5678e-03, - 2DIAGNOSTIC, 43, -5.217354866617e-01, 8.852493181135e-04, 3.0906e-01, 1.5571e-03, - 2DIAGNOSTIC, 44, -5.225939406692e-01, 9.369344353846e-04, 3.1089e-01, 1.8320e-03, - 2DIAGNOSTIC, 45, -5.232941697276e-01, 9.059519621917e-04, 3.1250e-01, 1.6060e-03, - 2DIAGNOSTIC, 46, -5.233913022923e-01, 7.975412578773e-04, 3.1432e-01, 1.8220e-03, - 2DIAGNOSTIC, 47, -5.238303773767e-01, 6.304474595690e-04, 3.1655e-01, 2.2268e-03, - 2DIAGNOSTIC, 48, -5.249106447560e-01, 4.394172108259e-04, 3.1838e-01, 1.8349e-03, - 2DIAGNOSTIC, 49, -5.247564586077e-01, 2.484081266778e-04, 3.1996e-01, 1.5762e-03, - 2DIAGNOSTIC, 50, -5.253642089837e-01, 1.476461613199e-04, 3.2155e-01, 1.5872e-03, - 2DIAGNOSTIC, 51, -5.259019279809e-01, 1.299088457254e-04, 3.2383e-01, 2.2788e-03, - 2DIAGNOSTIC, 52, -5.269845687644e-01, 1.170771330324e-04, 3.2661e-01, 2.7821e-03, - 2DIAGNOSTIC, 53, -5.271041861822e-01, 1.122800259644e-04, 3.2818e-01, 1.5681e-03, - 2DIAGNOSTIC, 54, -5.277848364021e-01, 1.135296489601e-04, 3.2974e-01, 1.5681e-03, - 2DIAGNOSTIC, 55, -5.285598212239e-01, 1.195179964390e-04, 3.3129e-01, 1.5490e-03, - 2DIAGNOSTIC, 56, -5.291196124502e-01, 1.203463582146e-04, 3.3312e-01, 1.8220e-03, - 2DIAGNOSTIC, 57, -5.293295855676e-01, 1.158301512599e-04, 3.3471e-01, 1.5900e-03, - 2DIAGNOSTIC, 58, -5.292525815460e-01, 1.106468808417e-04, 3.3628e-01, 1.5790e-03, - 2DIAGNOSTIC, 59, -5.296249724742e-01, 9.726738671807e-05, 3.3790e-01, 1.6170e-03, - 2DIAGNOSTIC, 60, -5.300724455432e-01, 8.494226587776e-05, 3.3951e-01, 1.6050e-03, - 2DIAGNOSTIC, 61, -5.305755067549e-01, 7.435707484576e-05, 3.4235e-01, 2.8460e-03, - 2DIAGNOSTIC, 62, -5.303311436324e-01, 6.488943840608e-05, 3.4394e-01, 1.5860e-03, - 2DIAGNOSTIC, 63, -5.303586486860e-01, 5.106302970723e-05, 3.4554e-01, 1.6060e-03, - 2DIAGNOSTIC, 64, -5.303948647026e-01, 3.911718696049e-05, 3.4715e-01, 1.6100e-03, - 2DIAGNOSTIC, 65, -5.305082777886e-01, 3.140369322729e-05, 3.4947e-01, 2.3160e-03, - 2DIAGNOSTIC, 66, -5.312799040567e-01, 3.238748321293e-05, 3.5205e-01, 2.5830e-03, - 2DIAGNOSTIC, 67, -5.312822087850e-01, 3.204676217529e-05, 3.5369e-01, 1.6322e-03, - 2DIAGNOSTIC, 68, -5.312931210195e-01, 2.824568738619e-05, 3.5533e-01, 1.6489e-03, - 2DIAGNOSTIC, 69, -5.313103702436e-01, 2.511065111531e-05, 3.5696e-01, 1.6229e-03, - 2DIAGNOSTIC, 70, -5.313344955264e-01, 2.335396035244e-05, 3.5857e-01, 1.6091e-03, - 2DIAGNOSTIC, 71, -5.313627142516e-01, 2.365550860137e-05, 3.6038e-01, 1.8129e-03, - 2DIAGNOSTIC, 72, -5.313854586454e-01, 1.995165705596e-05, 3.6198e-01, 1.6041e-03, - 2DIAGNOSTIC, 73, -5.310514582648e-01, 1.219308955456e-05, 3.6356e-01, 1.5750e-03, - 2DIAGNOSTIC, 74, -5.314617264375e-01, 7.070726358336e-06, 3.6520e-01, 1.6429e-03, - 2DIAGNOSTIC, 75, -5.320541318049e-01, 6.503066652747e-06, 3.6732e-01, 2.1169e-03, - 2DIAGNOSTIC, 76, -5.324356794466e-01, 1.382861009777e-05, 3.6986e-01, 2.5461e-03, - 2DIAGNOSTIC, 77, -5.321189426429e-01, 1.737967288576e-05, 3.7142e-01, 1.5590e-03, - 2DIAGNOSTIC, 78, -5.321352298031e-01, 1.959666881097e-05, 3.7298e-01, 1.5600e-03, - 2DIAGNOSTIC, 79, -5.321725436901e-01, 2.025255262682e-05, 3.7456e-01, 1.5810e-03, - 2DIAGNOSTIC, 80, -5.327128004875e-01, 2.278410324714e-05, 3.7613e-01, 1.5690e-03, - 2DIAGNOSTIC, 81, -5.340658806419e-01, 3.257058558398e-05, 3.7819e-01, 2.0599e-03, - 2DIAGNOSTIC, 82, -5.341538379915e-01, 3.973624859889e-05, 3.8002e-01, 1.8251e-03, - 2DIAGNOSTIC, 83, -5.350249885486e-01, 4.673590975159e-05, 3.8194e-01, 1.9259e-03, - 2DIAGNOSTIC, 84, -5.355887554447e-01, 5.546366031559e-05, 3.8379e-01, 1.8411e-03, - 2DIAGNOSTIC, 85, -5.360997986667e-01, 6.573854323146e-05, 3.8541e-01, 1.6260e-03, - 2DIAGNOSTIC, 86, -5.376609437259e-01, 8.208486808770e-05, 3.8699e-01, 1.5829e-03, - 2DIAGNOSTIC, 87, -5.392243784274e-01, 9.798843412440e-05, 3.8958e-01, 2.5890e-03, - 2DIAGNOSTIC, 88, -5.399550610079e-01, 1.087923850163e-04, 3.9121e-01, 1.6310e-03, - 2DIAGNOSTIC, 89, -5.398377980698e-01, 1.084259887559e-04, 3.9307e-01, 1.8580e-03, - 2DIAGNOSTIC, 90, -5.401963453981e-01, 1.032053913895e-04, 3.9516e-01, 2.0900e-03, - 2DIAGNOSTIC, 91, -5.406069505148e-01, 9.891711652827e-05, 3.9870e-01, 3.5391e-03, - 2DIAGNOSTIC, 92, -5.406087098615e-01, 8.541661799080e-05, 4.0029e-01, 1.5910e-03, - 2DIAGNOSTIC, 93, -5.406702822342e-01, 6.966080586172e-05, 4.0210e-01, 1.8060e-03, - 2DIAGNOSTIC, 94, -5.407066891882e-01, 5.132139299930e-05, 4.0369e-01, 1.5941e-03, - 2DIAGNOSTIC, 95, -5.403912559896e-01, 2.948748134456e-05, 4.0532e-01, 1.6282e-03, - 2DIAGNOSTIC, 96, -5.404751194176e-01, 1.467471935836e-05, 4.0693e-01, 1.6110e-03, - 2DIAGNOSTIC, 97, -5.405881007662e-01, 8.302975046838e-06, 4.0852e-01, 1.5919e-03, - 2DIAGNOSTIC, 98, -5.407159744388e-01, 6.216356043072e-06, 4.1012e-01, 1.5960e-03, - 2DIAGNOSTIC, 99, -5.408200097270e-01, 3.498565563018e-06, 4.1171e-01, 1.5950e-03, - 2DIAGNOSTIC, 100, -5.408751342253e-01, 2.805467491958e-06, 4.1328e-01, 1.5700e-03, - 2DIAGNOSTIC, 101, -5.405416253299e-01, 2.326015690569e-06, 4.1519e-01, 1.9031e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.995667042841e-01, 1.797693134862e+308, 6.4653e-01, 2.3135e-01, - 2DIAGNOSTIC, 2, -3.985676444601e-01, 1.797693134862e+308, 6.4866e-01, 2.1279e-03, - 2DIAGNOSTIC, 3, -3.992618686416e-01, 1.797693134862e+308, 6.5061e-01, 1.9441e-03, - 2DIAGNOSTIC, 4, -4.010409403299e-01, 1.797693134862e+308, 6.5280e-01, 2.1980e-03, - 2DIAGNOSTIC, 5, -4.020685321747e-01, 1.797693134862e+308, 6.5510e-01, 2.2931e-03, - 2DIAGNOSTIC, 6, -4.021876539868e-01, 1.797693134862e+308, 6.5762e-01, 2.5241e-03, - 2DIAGNOSTIC, 7, -4.024902346571e-01, 1.797693134862e+308, 6.5950e-01, 1.8811e-03, - 2DIAGNOSTIC, 8, -4.039701642887e-01, 1.797693134862e+308, 6.6141e-01, 1.9112e-03, - 2DIAGNOSTIC, 9, -4.045714077909e-01, 1.797693134862e+308, 6.6363e-01, 2.2111e-03, - 2DIAGNOSTIC, 10, -4.048431462153e-01, 1.030350245504e-03, 6.6578e-01, 2.1532e-03, - 2DIAGNOSTIC, 11, -4.052067611785e-01, 9.621809669521e-04, 6.6792e-01, 2.1431e-03, - 2DIAGNOSTIC, 12, -4.057950786592e-01, 7.958012357885e-04, 6.7008e-01, 2.1629e-03, - 2DIAGNOSTIC, 13, -4.066451815611e-01, 6.634068025019e-04, 6.7240e-01, 2.3148e-03, - 2DIAGNOSTIC, 14, -4.076511768604e-01, 6.276874580655e-04, 6.7686e-01, 4.4570e-03, - 2DIAGNOSTIC, 15, -4.083665667792e-01, 6.218515156931e-04, 6.8008e-01, 3.2270e-03, - 2DIAGNOSTIC, 16, -4.084854951872e-01, 5.710942370933e-04, 6.8273e-01, 2.6512e-03, - 2DIAGNOSTIC, 17, -4.090448584832e-01, 5.086605350471e-04, 6.8534e-01, 2.6069e-03, - 2DIAGNOSTIC, 18, -4.095200685972e-01, 4.815473044190e-04, 6.8798e-01, 2.6422e-03, - 2DIAGNOSTIC, 19, -4.101726680904e-01, 4.584034064382e-04, 6.9024e-01, 2.2581e-03, - 2DIAGNOSTIC, 20, -4.118690035058e-01, 4.638150526219e-04, 6.9253e-01, 2.2919e-03, - 2DIAGNOSTIC, 21, -4.139040172229e-01, 5.046349052193e-04, 6.9514e-01, 2.6059e-03, - 2DIAGNOSTIC, 22, -4.145355223712e-01, 5.322755598161e-04, 6.9769e-01, 2.5499e-03, - 2DIAGNOSTIC, 23, -4.184457619516e-01, 6.524543673058e-04, 7.0033e-01, 2.6450e-03, - 2DIAGNOSTIC, 24, -4.388565687468e-01, 1.318915246987e-03, 7.0262e-01, 2.2879e-03, - 2DIAGNOSTIC, 25, -4.454912241072e-01, 1.992413076398e-03, 7.0500e-01, 2.3820e-03, - 2DIAGNOSTIC, 26, -4.532726803461e-01, 2.633485651748e-03, 7.0733e-01, 2.3241e-03, - 2DIAGNOSTIC, 27, -4.609990113994e-01, 3.189147458164e-03, 7.1034e-01, 3.0138e-03, - 2DIAGNOSTIC, 28, -4.663383540207e-01, 3.538800688595e-03, 7.1270e-01, 2.3561e-03, - 2DIAGNOSTIC, 29, -4.692969986527e-01, 3.605093475347e-03, 7.1615e-01, 3.4559e-03, - 2DIAGNOSTIC, 30, -4.756571246919e-01, 3.505487547932e-03, 7.1947e-01, 3.3200e-03, - 2DIAGNOSTIC, 31, -4.855174028741e-01, 3.342295566269e-03, 7.2195e-01, 2.4772e-03, - 2DIAGNOSTIC, 32, -4.903329703146e-01, 2.987103493379e-03, 7.2499e-01, 3.0429e-03, - 2DIAGNOSTIC, 33, -4.934234395950e-01, 2.507612578237e-03, 7.2774e-01, 2.7449e-03, - 2DIAGNOSTIC, 34, -4.967233464044e-01, 2.288713950505e-03, 7.3047e-01, 2.7351e-03, - 2DIAGNOSTIC, 35, -5.044548749851e-01, 2.135294008101e-03, 7.3462e-01, 4.1471e-03, - 2DIAGNOSTIC, 36, -5.089566847728e-01, 2.005819632696e-03, 7.3764e-01, 3.0222e-03, - 2DIAGNOSTIC, 37, -5.137527910560e-01, 1.913674649423e-03, 7.3999e-01, 2.3439e-03, - 2DIAGNOSTIC, 38, -5.207932925835e-01, 1.859508496004e-03, 7.4272e-01, 2.7342e-03, - 2DIAGNOSTIC, 39, -5.272666085906e-01, 1.786018265376e-03, 7.4537e-01, 2.6481e-03, - 2DIAGNOSTIC, 40, -5.289551764068e-01, 1.671414144661e-03, 7.4865e-01, 3.2840e-03, - 2DIAGNOSTIC, 41, -5.299770526082e-01, 1.574694566624e-03, 7.5096e-01, 2.3019e-03, - 2DIAGNOSTIC, 42, -5.307986826681e-01, 1.420308356686e-03, 7.5321e-01, 2.2581e-03, - 2DIAGNOSTIC, 43, -5.332623000654e-01, 1.220339684441e-03, 7.5583e-01, 2.6162e-03, - 2DIAGNOSTIC, 44, -5.363575851130e-01, 1.002990533816e-03, 7.5843e-01, 2.6040e-03, - 2DIAGNOSTIC, 45, -5.416622951534e-01, 8.832008064799e-04, 7.6069e-01, 2.2581e-03, - 2DIAGNOSTIC, 46, -5.499298790989e-01, 8.587009660375e-04, 7.6346e-01, 2.7640e-03, - 2DIAGNOSTIC, 47, -5.575085524371e-01, 9.144625167400e-04, 7.6621e-01, 2.7521e-03, - 2DIAGNOSTIC, 48, -5.834730258167e-01, 1.302743686060e-03, 7.6929e-01, 3.0780e-03, - 2DIAGNOSTIC, 49, -6.264838998048e-01, 2.157942444498e-03, 7.7245e-01, 3.1600e-03, - 2DIAGNOSTIC, 50, -6.277776969677e-01, 2.786972811329e-03, 7.7462e-01, 2.1751e-03, - 2DIAGNOSTIC, 51, -6.292460449231e-01, 3.156212835336e-03, 7.7711e-01, 2.4910e-03, - 2DIAGNOSTIC, 52, -6.292778997129e-01, 3.221128845999e-03, 7.7958e-01, 2.4681e-03, - 2DIAGNOSTIC, 53, -6.295540037954e-01, 3.001199079726e-03, 7.8205e-01, 2.4738e-03, - 2DIAGNOSTIC, 54, -6.319821293563e-01, 2.558228243895e-03, 7.8542e-01, 3.3700e-03, - 2DIAGNOSTIC, 55, -6.328575882219e-01, 1.959021207035e-03, 7.8787e-01, 2.4459e-03, - 2DIAGNOSTIC, 56, -6.328942821374e-01, 1.296280181834e-03, 7.9036e-01, 2.4900e-03, - 2DIAGNOSTIC, 57, -6.326003396215e-01, 6.132117153979e-04, 7.9254e-01, 2.1780e-03, - 2DIAGNOSTIC, 58, -6.329319975171e-01, 1.543297573328e-04, 7.9495e-01, 2.4161e-03, - 2DIAGNOSTIC, 59, -6.330663670845e-01, 1.239412694997e-04, 7.9724e-01, 2.2819e-03, - 2DIAGNOSTIC, 60, -6.337550643351e-01, 1.014801264948e-04, 7.9984e-01, 2.6062e-03, - 2DIAGNOSTIC, 61, -6.367972100457e-01, 1.129978653327e-04, 8.0308e-01, 3.2351e-03, - 2DIAGNOSTIC, 62, -6.367803017231e-01, 1.130733366210e-04, 8.0537e-01, 2.2950e-03, - 2DIAGNOSTIC, 63, -6.371330691220e-01, 1.079127887002e-04, 8.0796e-01, 2.5840e-03, - 2DIAGNOSTIC, 64, -6.372295610157e-01, 1.150498850934e-04, 8.1042e-01, 2.4590e-03, - 2DIAGNOSTIC, 65, -6.373338831920e-01, 1.192506086815e-04, 8.1349e-01, 3.0701e-03, - 2DIAGNOSTIC, 66, -6.373026573760e-01, 1.116548303213e-04, 8.1597e-01, 2.4831e-03, - 2DIAGNOSTIC, 67, -6.373926102742e-01, 9.193535818813e-05, 8.1815e-01, 2.1861e-03, - 2DIAGNOSTIC, 68, -6.373441646862e-01, 6.687530522730e-05, 8.2036e-01, 2.2070e-03, - 2DIAGNOSTIC, 69, -6.374392412674e-01, 3.832330366772e-05, 8.2253e-01, 2.1701e-03, - 2DIAGNOSTIC, 70, -6.375559351817e-01, 1.285038960185e-05, 8.2502e-01, 2.4841e-03, - 2DIAGNOSTIC, 71, -6.376701628909e-01, 1.163692328909e-05, 8.2751e-01, 2.4939e-03, - 2DIAGNOSTIC, 72, -6.377506263045e-01, 9.817897240121e-06, 8.2970e-01, 2.1892e-03, - 2DIAGNOSTIC, 73, -6.377837729965e-01, 1.005933175759e-05, 8.3187e-01, 2.1679e-03, - 2DIAGNOSTIC, 74, -6.380669904246e-01, 1.216660956375e-05, 8.3544e-01, 3.5732e-03, - 2DIAGNOSTIC, 75, -6.380064536769e-01, 1.334553308402e-05, 8.3834e-01, 2.8970e-03, - 2DIAGNOSTIC, 76, -6.380776814857e-01, 1.354797443606e-05, 8.4168e-01, 3.3398e-03, - 2DIAGNOSTIC, 77, -6.383147151550e-01, 1.481976854967e-05, 8.4486e-01, 3.1829e-03, - 2DIAGNOSTIC, 78, -6.384545507943e-01, 1.524870428831e-05, 8.4792e-01, 3.0570e-03, - 2DIAGNOSTIC, 79, -6.393452887950e-01, 2.092887530544e-05, 8.5029e-01, 2.3701e-03, - 2DIAGNOSTIC, 80, -6.392101550526e-01, 2.419665528827e-05, 8.5294e-01, 2.6581e-03, - 2DIAGNOSTIC, 81, -6.394841337659e-01, 2.776722134396e-05, 8.5551e-01, 2.5630e-03, - 2DIAGNOSTIC, 82, -6.399928484895e-01, 3.245408759360e-05, 8.5763e-01, 2.1181e-03, - 2DIAGNOSTIC, 83, -6.419457446765e-01, 4.650033706559e-05, 8.6009e-01, 2.4679e-03, - 2DIAGNOSTIC, 84, -6.420998014578e-01, 5.813368272324e-05, 8.6261e-01, 2.5189e-03, - 2DIAGNOSTIC, 85, -6.420390024219e-01, 6.329642546938e-05, 8.6521e-01, 2.5959e-03, - 2DIAGNOSTIC, 86, -6.426327061465e-01, 6.658496373524e-05, 8.6746e-01, 2.2531e-03, - 2DIAGNOSTIC, 87, -6.428539942736e-01, 6.601685388788e-05, 8.7011e-01, 2.6469e-03, - 2DIAGNOSTIC, 88, -6.434629583080e-01, 6.327095794481e-05, 8.7268e-01, 2.5749e-03, - 2DIAGNOSTIC, 89, -6.437400192955e-01, 6.143842693567e-05, 8.7485e-01, 2.1710e-03, - 2DIAGNOSTIC, 90, -6.439748039511e-01, 5.452872003331e-05, 8.7754e-01, 2.6841e-03, - 2DIAGNOSTIC, 91, -6.442472276306e-01, 4.576241255105e-05, 8.7996e-01, 2.4199e-03, - 2DIAGNOSTIC, 92, -6.443442833104e-01, 3.592179277423e-05, 8.8207e-01, 2.1150e-03, - 2DIAGNOSTIC, 93, -6.444675637580e-01, 3.452793946658e-05, 8.8425e-01, 2.1729e-03, - 2DIAGNOSTIC, 94, -6.450020854731e-01, 3.372358076665e-05, 8.8694e-01, 2.6951e-03, - 2DIAGNOSTIC, 95, -6.453630380851e-01, 3.123739602784e-05, 8.8930e-01, 2.3580e-03, - 2DIAGNOSTIC, 96, -6.453528293069e-01, 2.897263418508e-05, 8.9174e-01, 2.4412e-03, - 2DIAGNOSTIC, 97, -6.453387998668e-01, 2.510656585325e-05, 8.9386e-01, 2.1231e-03, - 2DIAGNOSTIC, 98, -6.456382273528e-01, 2.373900523236e-05, 8.9595e-01, 2.0890e-03, - 2DIAGNOSTIC, 99, -6.459485698120e-01, 2.309396545892e-05, 8.9841e-01, 2.4590e-03, - 2DIAGNOSTIC, 100, -6.468284236169e-01, 2.591341217137e-05, 9.0075e-01, 2.3389e-03, - 2DIAGNOSTIC, 101, -6.471453639014e-01, 2.914544672244e-05, 9.0419e-01, 3.4368e-03, - 2DIAGNOSTIC, 102, -6.473247123140e-01, 3.098452077661e-05, 9.0649e-01, 2.2979e-03, - 2DIAGNOSTIC, 103, -6.474308258138e-01, 3.094044165029e-05, 9.0874e-01, 2.2550e-03, - 2DIAGNOSTIC, 104, -6.474084177691e-01, 3.037943496961e-05, 9.1097e-01, 2.2342e-03, - 2DIAGNOSTIC, 105, -6.471591522181e-01, 2.743436431748e-05, 9.1296e-01, 1.9870e-03, - 2DIAGNOSTIC, 106, -6.470549971526e-01, 2.142376858321e-05, 9.1520e-01, 2.2430e-03, - 2DIAGNOSTIC, 107, -6.470725094464e-01, 1.354224516479e-05, 9.1716e-01, 1.9572e-03, - 2DIAGNOSTIC, 108, -6.469459930965e-01, 5.360431700723e-06, 9.1911e-01, 1.9460e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.155503118047e-01, 1.797693134862e+308, 1.1746e+00, 2.5550e-01, - 2DIAGNOSTIC, 2, -5.174728936787e-01, 1.797693134862e+308, 1.1869e+00, 1.2311e-02, - 2DIAGNOSTIC, 3, -5.193693528468e-01, 1.797693134862e+308, 1.1991e+00, 1.2168e-02, - 2DIAGNOSTIC, 4, -5.202996337195e-01, 1.797693134862e+308, 1.2113e+00, 1.2200e-02, - 2DIAGNOSTIC, 5, -5.214242797846e-01, 1.797693134862e+308, 1.2235e+00, 1.2177e-02, - 2DIAGNOSTIC, 6, -5.224626460673e-01, 1.797693134862e+308, 1.2355e+00, 1.2043e-02, - 2DIAGNOSTIC, 7, -5.226772863437e-01, 1.797693134862e+308, 1.2478e+00, 1.2289e-02, - 2DIAGNOSTIC, 8, -5.232520182689e-01, 1.797693134862e+308, 1.2618e+00, 1.3965e-02, - 2DIAGNOSTIC, 9, -5.234637040128e-01, 1.797693134862e+308, 1.2777e+00, 1.5910e-02, - 2DIAGNOSTIC, 10, -5.238363775329e-01, 9.593463210810e-04, 1.2919e+00, 1.4206e-02, - 2DIAGNOSTIC, 11, -5.238159825758e-01, 6.649284535679e-04, 1.3042e+00, 1.2320e-02, - 2DIAGNOSTIC, 12, -5.238018209243e-01, 4.459672756823e-04, 1.3203e+00, 1.6151e-02, - 2DIAGNOSTIC, 13, -5.239586909487e-01, 3.068181493720e-04, 1.3344e+00, 1.4048e-02, - 2DIAGNOSTIC, 14, -5.240010040809e-01, 1.967272402204e-04, 1.3536e+00, 1.9183e-02, - 2DIAGNOSTIC, 15, -5.240055077626e-01, 1.237295390756e-04, 1.3656e+00, 1.2034e-02, - 2DIAGNOSTIC, 16, -5.239851473766e-01, 8.358760456915e-05, 1.3793e+00, 1.3716e-02, - 2DIAGNOSTIC, 17, -5.239883964833e-01, 4.743251065618e-05, 1.3930e+00, 1.3717e-02, - 2DIAGNOSTIC, 18, -5.239663094370e-01, 2.765811170589e-05, 1.4049e+00, 1.1878e-02, - 2DIAGNOSTIC, 19, -5.239582512788e-01, 1.305629183784e-05, 1.4170e+00, 1.2065e-02, - 2DIAGNOSTIC, 20, -5.239642394874e-01, 9.238077742307e-06, 1.4290e+00, 1.2019e-02, - 2DIAGNOSTIC, 21, -5.239989510010e-01, 5.512594116804e-06, 1.4430e+00, 1.3979e-02, - 2DIAGNOSTIC, 22, -5.239974807513e-01, 1.247248127417e-06, 1.4570e+00, 1.4006e-02, - 2DIAGNOSTIC, 23, -5.240223193932e-01, 1.655843790090e-06, 1.4693e+00, 1.2306e-02, - 2DIAGNOSTIC, 24, -5.240525110987e-01, 3.641093982959e-06, 1.4855e+00, 1.6210e-02, - 2DIAGNOSTIC, 25, -5.240905567610e-01, 6.163800902972e-06, 1.5037e+00, 1.8167e-02, - 2DIAGNOSTIC, 26, -5.240834440536e-01, 7.428338974519e-06, 1.5162e+00, 1.2540e-02, - 2DIAGNOSTIC, 27, -5.240759568719e-01, 7.961530528879e-06, 1.5304e+00, 1.4205e-02, - 2DIAGNOSTIC, 28, -5.240783997936e-01, 7.456898060011e-06, 1.5427e+00, 1.2240e-02, - 2DIAGNOSTIC, 29, -5.240685846650e-01, 6.040559638376e-06, 1.5556e+00, 1.2934e-02, - 2DIAGNOSTIC, 30, -5.240736585202e-01, 4.431220377937e-06, 1.5678e+00, 1.2209e-02, - 2DIAGNOSTIC, 31, -5.240566763504e-01, 2.928641565689e-06, 1.5799e+00, 1.2061e-02, - 2DIAGNOSTIC, 32, -5.240719366090e-01, 1.587851616532e-06, 1.5919e+00, 1.2087e-02, - 2DIAGNOSTIC, 33, -5.241111316127e-01, 1.309179750220e-06, 1.6059e+00, 1.3947e-02, - 2DIAGNOSTIC, 34, -5.241344818891e-01, 1.831914410326e-06, 1.6204e+00, 1.4551e-02, - 2DIAGNOSTIC, 35, -5.240896188836e-01, 2.137386895747e-06, 1.6404e+00, 1.9989e-02, - 2DIAGNOSTIC, 36, -5.242585728914e-01, 4.788902626542e-06, 1.6535e+00, 1.3067e-02, - 2DIAGNOSTIC, 37, -5.243359593677e-01, 7.871602338679e-06, 1.6676e+00, 1.4085e-02, - 2DIAGNOSTIC, 38, -5.242887184804e-01, 9.460218487377e-06, 1.6815e+00, 1.3882e-02, - 2DIAGNOSTIC, 39, -5.243605654490e-01, 1.107293663943e-05, 1.6935e+00, 1.2001e-02, - 2DIAGNOSTIC, 40, -5.244204048730e-01, 1.250787077213e-05, 1.7054e+00, 1.1954e-02, - 2DIAGNOSTIC, 41, -5.246820265760e-01, 1.594003019931e-05, 1.7196e+00, 1.4156e-02, - 2DIAGNOSTIC, 42, -5.247994127921e-01, 1.936011367779e-05, 1.7355e+00, 1.5950e-02, - 2DIAGNOSTIC, 43, -5.248685089990e-01, 2.224327211605e-05, 1.7494e+00, 1.3885e-02, - 2DIAGNOSTIC, 44, -5.249488690103e-01, 2.430618758783e-05, 1.7633e+00, 1.3836e-02, - 2DIAGNOSTIC, 45, -5.250191856610e-01, 2.425051369834e-05, 1.7773e+00, 1.4097e-02, - 2DIAGNOSTIC, 46, -5.249576918103e-01, 2.313503893349e-05, 1.7934e+00, 1.6078e-02, - 2DIAGNOSTIC, 47, -5.249617687326e-01, 2.090470393362e-05, 1.8073e+00, 1.3903e-02, - 2DIAGNOSTIC, 48, -5.249527978316e-01, 1.620955207206e-05, 1.8211e+00, 1.3780e-02, - 2DIAGNOSTIC, 49, -5.249456077614e-01, 1.094196266926e-05, 1.8352e+00, 1.4075e-02, - 2DIAGNOSTIC, 50, -5.249368679743e-01, 5.388179780959e-06, 1.8474e+00, 1.2254e-02, - 2DIAGNOSTIC, 51, -5.249309105027e-01, 2.313270876738e-06, 1.8617e+00, 1.4275e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.551688854962e-01, 1.797693134862e+308, 2.2764e+00, 4.1472e-01, - 2DIAGNOSTIC, 2, -4.553902511639e-01, 1.797693134862e+308, 2.3609e+00, 8.4489e-02, - 2DIAGNOSTIC, 3, -4.555836476564e-01, 1.797693134862e+308, 2.4580e+00, 9.7041e-02, - 2DIAGNOSTIC, 4, -4.556431743191e-01, 1.797693134862e+308, 2.5458e+00, 8.7830e-02, - 2DIAGNOSTIC, 5, -4.557952118131e-01, 1.797693134862e+308, 2.6295e+00, 8.3723e-02, - 2DIAGNOSTIC, 6, -4.563126788405e-01, 1.797693134862e+308, 2.7638e+00, 1.3425e-01, - 2DIAGNOSTIC, 7, -4.564755820125e-01, 1.797693134862e+308, 2.8581e+00, 9.4343e-02, - 2DIAGNOSTIC, 8, -4.565523180275e-01, 1.797693134862e+308, 2.9590e+00, 1.0085e-01, - 2DIAGNOSTIC, 9, -4.565931544260e-01, 1.797693134862e+308, 3.0451e+00, 8.6194e-02, - 2DIAGNOSTIC, 10, -4.566695428593e-01, 2.341388105223e-04, 3.1274e+00, 8.2251e-02, - 2DIAGNOSTIC, 11, -4.570052030656e-01, 2.074419515947e-04, 3.2242e+00, 9.6823e-02, - 2DIAGNOSTIC, 12, -4.570751887433e-01, 1.811925109988e-04, 3.3725e+00, 1.4823e-01, - 2DIAGNOSTIC, 13, -4.570806545860e-01, 1.528686621112e-04, 3.4647e+00, 9.2282e-02, - 2DIAGNOSTIC, 14, -4.570845729018e-01, 1.181793572505e-04, 3.5469e+00, 8.2200e-02, - 2DIAGNOSTIC, 15, -4.570891318962e-01, 8.349430734535e-05, 3.6428e+00, 9.5888e-02, - 2DIAGNOSTIC, 16, -4.570937325408e-01, 6.564715382383e-05, 3.7531e+00, 1.1031e-01, - 2DIAGNOSTIC, 17, -4.570947949743e-01, 4.994070347564e-05, 3.8365e+00, 8.3316e-02, - 2DIAGNOSTIC, 18, -4.570935369937e-01, 3.432367194044e-05, 3.9323e+00, 9.5873e-02, - 2DIAGNOSTIC, 19, -4.570950836918e-01, 1.882373557817e-05, 4.0307e+00, 9.8331e-02, - 2DIAGNOSTIC, 20, -4.570945587174e-01, 5.368345380473e-06, 4.1270e+00, 9.6392e-02, - 2DIAGNOSTIC, 21, -4.570923355873e-01, 2.669715357242e-06, 4.2114e+00, 8.4360e-02, - 2DIAGNOSTIC, 22, -4.570918177734e-01, 2.074956834283e-06, 4.2986e+00, 8.7209e-02, - 2DIAGNOSTIC, 23, -4.570927399761e-01, 1.646364457430e-06, 4.4105e+00, 1.1188e-01, - 2DIAGNOSTIC, 24, -4.570917543398e-01, 1.301239035127e-06, 4.5220e+00, 1.1154e-01, - 2DIAGNOSTIC, 25, -4.570905415329e-01, 1.067022702972e-06, 4.6184e+00, 9.6323e-02, - Elapsed time (stage 0): 4.7561e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.498865863069e-01, 1.797693134862e+308, 2.0175e-01, 2.0175e-01, - 2DIAGNOSTIC, 2, -7.515904605017e-01, 1.797693134862e+308, 2.0325e-01, 1.4999e-03, - 2DIAGNOSTIC, 3, -7.531005021561e-01, 1.797693134862e+308, 2.0450e-01, 1.2522e-03, - 2DIAGNOSTIC, 4, -7.554687556715e-01, 1.797693134862e+308, 2.0580e-01, 1.3020e-03, - 2DIAGNOSTIC, 5, -7.588765094363e-01, 1.797693134862e+308, 2.0700e-01, 1.1978e-03, - 2DIAGNOSTIC, 6, -7.637563460884e-01, 1.797693134862e+308, 2.0818e-01, 1.1840e-03, - 2DIAGNOSTIC, 7, -7.706124492948e-01, 1.797693134862e+308, 2.0941e-01, 1.2212e-03, - 2DIAGNOSTIC, 8, -7.802691550669e-01, 1.797693134862e+308, 2.1088e-01, 1.4782e-03, - 2DIAGNOSTIC, 9, -7.925697099560e-01, 1.797693134862e+308, 2.1235e-01, 1.4629e-03, - 2DIAGNOSTIC, 10, -8.056681192339e-01, 4.388598150356e-03, 2.1385e-01, 1.5080e-03, - 2DIAGNOSTIC, 11, -8.228511907652e-01, 5.161062315849e-03, 2.1579e-01, 1.9379e-03, - 2DIAGNOSTIC, 12, -8.465843367791e-01, 6.088753065933e-03, 2.1741e-01, 1.6210e-03, - 2DIAGNOSTIC, 13, -8.554527665977e-01, 6.587767962689e-03, 2.1955e-01, 2.1331e-03, - 2DIAGNOSTIC, 14, -8.563361555239e-01, 6.500675310265e-03, 2.2111e-01, 1.5628e-03, - 2DIAGNOSTIC, 15, -8.583548213113e-01, 5.970157170424e-03, 2.2238e-01, 1.2720e-03, - 2DIAGNOSTIC, 16, -8.588174232554e-01, 5.080306490330e-03, 2.2449e-01, 2.1069e-03, - 2DIAGNOSTIC, 17, -8.599110198831e-01, 3.994328931789e-03, 2.2632e-01, 1.8330e-03, - 2DIAGNOSTIC, 18, -8.588781112687e-01, 2.836110776373e-03, 2.2812e-01, 1.8010e-03, - 2DIAGNOSTIC, 19, -8.596298766473e-01, 1.791109694822e-03, 2.3014e-01, 2.0218e-03, - 2DIAGNOSTIC, 20, -8.594335360589e-01, 9.151947739035e-04, 2.3184e-01, 1.6990e-03, - 2DIAGNOSTIC, 21, -8.599485067249e-01, 3.274418172505e-04, 2.3401e-01, 2.1691e-03, - 2DIAGNOSTIC, 22, -8.619840955445e-01, 1.702859722015e-04, 2.3624e-01, 2.2311e-03, - 2DIAGNOSTIC, 23, -8.588236640865e-01, 9.751273987928e-05, 2.3855e-01, 2.3031e-03, - 2DIAGNOSTIC, 24, -8.590591744908e-01, 3.945687090776e-05, 2.4031e-01, 1.7600e-03, - 2DIAGNOSTIC, 25, -8.592559076167e-01, 1.296808375793e-05, 2.4226e-01, 1.9538e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.096110059304e-01, 1.797693134862e+308, 4.4864e-01, 2.0638e-01, - 2DIAGNOSTIC, 2, -7.092620282460e-01, 1.797693134862e+308, 4.5099e-01, 2.3482e-03, - 2DIAGNOSTIC, 3, -7.102869643071e-01, 1.797693134862e+308, 4.5348e-01, 2.4951e-03, - 2DIAGNOSTIC, 4, -7.112733265814e-01, 1.797693134862e+308, 4.5581e-01, 2.3291e-03, - 2DIAGNOSTIC, 5, -7.122592917156e-01, 1.797693134862e+308, 4.5848e-01, 2.6731e-03, - 2DIAGNOSTIC, 6, -7.141401805969e-01, 1.797693134862e+308, 4.6061e-01, 2.1229e-03, - 2DIAGNOSTIC, 7, -7.162551724365e-01, 1.797693134862e+308, 4.6290e-01, 2.2972e-03, - 2DIAGNOSTIC, 8, -7.208919395237e-01, 1.797693134862e+308, 4.6635e-01, 3.4492e-03, - 2DIAGNOSTIC, 9, -7.215544640468e-01, 1.797693134862e+308, 4.6843e-01, 2.0719e-03, - 2DIAGNOSTIC, 10, -7.218410182146e-01, 1.317452152350e-03, 4.7070e-01, 2.2771e-03, - 2DIAGNOSTIC, 11, -7.223041792732e-01, 1.257289998982e-03, 4.7330e-01, 2.5952e-03, - 2DIAGNOSTIC, 12, -7.237345081338e-01, 1.128435325660e-03, 4.7598e-01, 2.6851e-03, - 2DIAGNOSTIC, 13, -7.250718486237e-01, 9.867480752641e-04, 4.7831e-01, 2.3279e-03, - 2DIAGNOSTIC, 14, -7.265762021769e-01, 8.461413041059e-04, 4.8153e-01, 3.2189e-03, - 2DIAGNOSTIC, 15, -7.263195709923e-01, 6.677003473302e-04, 4.8409e-01, 2.5642e-03, - 2DIAGNOSTIC, 16, -7.263411236110e-01, 4.988050001544e-04, 4.8646e-01, 2.3689e-03, - 2DIAGNOSTIC, 17, -7.267578364499e-01, 3.600915811588e-04, 4.8925e-01, 2.7859e-03, - 2DIAGNOSTIC, 18, -7.277231710380e-01, 3.255252671989e-04, 4.9257e-01, 3.3190e-03, - 2DIAGNOSTIC, 19, -7.275422895615e-01, 2.740212893700e-04, 4.9516e-01, 2.5911e-03, - 2DIAGNOSTIC, 20, -7.274091261175e-01, 2.064001319103e-04, 4.9779e-01, 2.6262e-03, - 2DIAGNOSTIC, 21, -7.274269539020e-01, 1.355433014167e-04, 5.0004e-01, 2.2559e-03, - 2DIAGNOSTIC, 22, -7.272993227963e-01, 8.129955413822e-05, 5.0234e-01, 2.2969e-03, - 2DIAGNOSTIC, 23, -7.273417445288e-01, 4.693193393480e-05, 5.0459e-01, 2.2531e-03, - 2DIAGNOSTIC, 24, -7.277169002801e-01, 4.222573022739e-05, 5.0687e-01, 2.2740e-03, - 2DIAGNOSTIC, 25, -7.279376712847e-01, 3.366418031715e-05, 5.0945e-01, 2.5849e-03, - 2DIAGNOSTIC, 26, -7.291886610578e-01, 4.192825692807e-05, 5.1209e-01, 2.6429e-03, - 2DIAGNOSTIC, 27, -7.300655742099e-01, 6.375829435014e-05, 5.1536e-01, 3.2659e-03, - 2DIAGNOSTIC, 28, -7.298673799697e-01, 8.883109980129e-05, 5.2074e-01, 5.3771e-03, - 2DIAGNOSTIC, 29, -7.298574698447e-01, 1.017169741356e-04, 5.2301e-01, 2.2779e-03, - 2DIAGNOSTIC, 30, -7.298594137491e-01, 1.025194741630e-04, 5.2528e-01, 2.2619e-03, - 2DIAGNOSTIC, 31, -7.298640216667e-01, 9.372126444492e-05, 5.2793e-01, 2.6579e-03, - 2DIAGNOSTIC, 32, -7.298704733963e-01, 7.506130991574e-05, 5.3024e-01, 2.3088e-03, - 2DIAGNOSTIC, 33, -7.297264698488e-01, 4.945699055458e-05, 5.3258e-01, 2.3379e-03, - 2DIAGNOSTIC, 34, -7.297446984022e-01, 2.563742027854e-05, 5.3497e-01, 2.3892e-03, - 2DIAGNOSTIC, 35, -7.299295402460e-01, 5.048102631251e-06, 5.3738e-01, 2.4059e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.048316816111e-01, 1.797693134862e+308, 7.6883e-01, 2.3146e-01, - 2DIAGNOSTIC, 2, -6.062697997281e-01, 1.797693134862e+308, 7.8339e-01, 1.4555e-02, - 2DIAGNOSTIC, 3, -6.082697707418e-01, 1.797693134862e+308, 7.9711e-01, 1.3722e-02, - 2DIAGNOSTIC, 4, -6.106625604778e-01, 1.797693134862e+308, 8.1101e-01, 1.3902e-02, - 2DIAGNOSTIC, 5, -6.134418466522e-01, 1.797693134862e+308, 8.2468e-01, 1.3669e-02, - 2DIAGNOSTIC, 6, -6.166760356727e-01, 1.797693134862e+308, 8.3726e-01, 1.2573e-02, - 2DIAGNOSTIC, 7, -6.183067816074e-01, 1.797693134862e+308, 8.5645e-01, 1.9199e-02, - 2DIAGNOSTIC, 8, -6.188046650334e-01, 1.797693134862e+308, 8.7645e-01, 1.9994e-02, - 2DIAGNOSTIC, 9, -6.188689481892e-01, 1.797693134862e+308, 8.9183e-01, 1.5383e-02, - 2DIAGNOSTIC, 10, -6.190047998323e-01, 1.702367050670e-03, 9.0563e-01, 1.3803e-02, - 2DIAGNOSTIC, 11, -6.190523990209e-01, 1.294544810989e-03, 9.2050e-01, 1.4863e-02, - 2DIAGNOSTIC, 12, -6.190887348752e-01, 8.953984614078e-04, 9.3466e-01, 1.4162e-02, - 2DIAGNOSTIC, 13, -6.191924257298e-01, 5.524930512432e-04, 9.5110e-01, 1.6440e-02, - 2DIAGNOSTIC, 14, -6.193137542219e-01, 2.912967575895e-04, 9.7524e-01, 2.4144e-02, - 2DIAGNOSTIC, 15, -6.193217018864e-01, 1.224550352233e-04, 9.9457e-01, 1.9323e-02, - 2DIAGNOSTIC, 16, -6.193313416962e-01, 5.630444909693e-05, 1.0139e+00, 1.9321e-02, - 2DIAGNOSTIC, 17, -6.193323050730e-01, 3.698679789771e-05, 1.0273e+00, 1.3460e-02, - 2DIAGNOSTIC, 18, -6.193181910084e-01, 2.894402004783e-05, 1.0427e+00, 1.5345e-02, - 2DIAGNOSTIC, 19, -6.193040788164e-01, 2.034093037445e-05, 1.0563e+00, 1.3604e-02, - 2DIAGNOSTIC, 20, -6.192907354554e-01, 1.370217167394e-05, 1.0697e+00, 1.3390e-02, - 2DIAGNOSTIC, 21, -6.192939147704e-01, 7.729161098820e-06, 1.0845e+00, 1.4834e-02, - 2DIAGNOSTIC, 22, -6.192839863536e-01, 2.236230994206e-06, 1.0982e+00, 1.3706e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.244461753779e-01, 1.797693134862e+308, 1.5387e+00, 4.4051e-01, - 2DIAGNOSTIC, 2, -5.249489792233e-01, 1.797693134862e+308, 1.6335e+00, 9.4747e-02, - 2DIAGNOSTIC, 3, -5.253273751388e-01, 1.797693134862e+308, 1.7307e+00, 9.7191e-02, - 2DIAGNOSTIC, 4, -5.257822301107e-01, 1.797693134862e+308, 1.8291e+00, 9.8471e-02, - 2DIAGNOSTIC, 5, -5.265181796818e-01, 1.797693134862e+308, 1.9398e+00, 1.1064e-01, - 2DIAGNOSTIC, 6, -5.280345036285e-01, 1.797693134862e+308, 2.0663e+00, 1.2651e-01, - 2DIAGNOSTIC, 7, -5.286283217984e-01, 1.797693134862e+308, 2.2189e+00, 1.5264e-01, - 2DIAGNOSTIC, 8, -5.286971559410e-01, 1.797693134862e+308, 2.3151e+00, 9.6180e-02, - 2DIAGNOSTIC, 9, -5.289232450690e-01, 1.797693134862e+308, 2.4104e+00, 9.5233e-02, - 2DIAGNOSTIC, 10, -5.292741191669e-01, 6.634830830234e-04, 2.5058e+00, 9.5470e-02, - 2DIAGNOSTIC, 11, -5.294390691767e-01, 5.545871203922e-04, 2.6024e+00, 9.6532e-02, - 2DIAGNOSTIC, 12, -5.297864017605e-01, 4.523314890976e-04, 2.7129e+00, 1.1059e-01, - 2DIAGNOSTIC, 13, -5.302912643961e-01, 3.624350953134e-04, 2.9199e+00, 2.0701e-01, - 2DIAGNOSTIC, 14, -5.303060142920e-01, 2.705792530508e-04, 3.0142e+00, 9.4228e-02, - 2DIAGNOSTIC, 15, -5.303350366176e-01, 1.928624244880e-04, 3.0996e+00, 8.5434e-02, - 2DIAGNOSTIC, 16, -5.303780516051e-01, 1.595056824504e-04, 3.1849e+00, 8.5261e-02, - 2DIAGNOSTIC, 17, -5.304365081653e-01, 1.361505878012e-04, 3.2717e+00, 8.6847e-02, - 2DIAGNOSTIC, 18, -5.305095876354e-01, 1.069358348629e-04, 3.3626e+00, 9.0917e-02, - 2DIAGNOSTIC, 19, -5.306310207022e-01, 8.074716706632e-05, 3.4489e+00, 8.6274e-02, - 2DIAGNOSTIC, 20, -5.307897939016e-01, 6.368314718275e-05, 3.5364e+00, 8.7482e-02, - 2DIAGNOSTIC, 21, -5.310203421525e-01, 5.242076449766e-05, 3.6228e+00, 8.6441e-02, - 2DIAGNOSTIC, 22, -5.317415195373e-01, 6.309111856321e-05, 3.7137e+00, 9.0910e-02, - 2DIAGNOSTIC, 23, -5.320041892915e-01, 8.460215135880e-05, 3.8232e+00, 1.0942e-01, - 2DIAGNOSTIC, 24, -5.321585161767e-01, 1.003541301869e-04, 4.0014e+00, 1.7825e-01, - 2DIAGNOSTIC, 25, -5.321649971252e-01, 1.064591889050e-04, 4.1112e+00, 1.0975e-01, - 2DIAGNOSTIC, 26, -5.321776722742e-01, 1.033501897954e-04, 4.2229e+00, 1.1170e-01, - 2DIAGNOSTIC, 27, -5.321926943722e-01, 9.212070866154e-05, 4.3331e+00, 1.1023e-01, - 2DIAGNOSTIC, 28, -5.322001267468e-01, 7.455520892138e-05, 4.4281e+00, 9.4985e-02, - 2DIAGNOSTIC, 29, -5.322217258603e-01, 5.404207463938e-05, 4.5217e+00, 9.3571e-02, - 2DIAGNOSTIC, 30, -5.322594462663e-01, 3.350706851777e-05, 4.6164e+00, 9.4782e-02, - 2DIAGNOSTIC, 31, -5.322932006090e-01, 1.552877591426e-05, 4.7094e+00, 9.2955e-02, - 2DIAGNOSTIC, 32, -5.323620180459e-01, 1.044381546219e-05, 4.8055e+00, 9.6157e-02, - 2DIAGNOSTIC, 33, -5.324383290778e-01, 1.019376741562e-05, 4.8969e+00, 9.1370e-02, - 2DIAGNOSTIC, 34, -5.326814432544e-01, 1.533195116465e-05, 4.9824e+00, 8.5439e-02, - 2DIAGNOSTIC, 35, -5.335872542983e-01, 3.268942620364e-05, 5.1345e+00, 1.5210e-01, - 2DIAGNOSTIC, 36, -5.336315849549e-01, 4.656605390583e-05, 5.2191e+00, 8.4683e-02, - 2DIAGNOSTIC, 37, -5.336802454012e-01, 5.644746822600e-05, 5.3049e+00, 8.5727e-02, - 2DIAGNOSTIC, 38, -5.337351330499e-01, 6.155802204890e-05, 5.3904e+00, 8.5544e-02, - 2DIAGNOSTIC, 39, -5.339725026756e-01, 6.407077599473e-05, 5.4760e+00, 8.5586e-02, - 2DIAGNOSTIC, 40, -5.343559940739e-01, 6.578881224946e-05, 5.5994e+00, 1.2340e-01, - 2DIAGNOSTIC, 41, -5.344279302168e-01, 6.248902567912e-05, 5.7238e+00, 1.2444e-01, - 2DIAGNOSTIC, 42, -5.344761958090e-01, 5.521306970623e-05, 5.8297e+00, 1.0582e-01, - 2DIAGNOSTIC, 43, -5.344955577952e-01, 4.437203195891e-05, 5.9291e+00, 9.9489e-02, - 2DIAGNOSTIC, 44, -5.345264694299e-01, 3.283644431189e-05, 6.0140e+00, 8.4873e-02, - 2DIAGNOSTIC, 45, -5.347933600752e-01, 3.260531975883e-05, 6.0997e+00, 8.5696e-02, - 2DIAGNOSTIC, 46, -5.349648307640e-01, 3.176548015980e-05, 6.1969e+00, 9.7216e-02, - 2DIAGNOSTIC, 47, -5.349710011039e-01, 2.867098846007e-05, 6.2829e+00, 8.6010e-02, - 2DIAGNOSTIC, 48, -5.349949217137e-01, 2.395542905042e-05, 6.3745e+00, 9.1576e-02, - 2DIAGNOSTIC, 49, -5.350503009819e-01, 2.030212494629e-05, 6.4675e+00, 9.2941e-02, - 2DIAGNOSTIC, 50, -5.351262491575e-01, 1.974479077134e-05, 6.5639e+00, 9.6422e-02, - 2DIAGNOSTIC, 51, -5.356132424263e-01, 2.317721008941e-05, 6.7331e+00, 1.6922e-01, - 2DIAGNOSTIC, 52, -5.356540933873e-01, 2.513959161855e-05, 6.8411e+00, 1.0800e-01, - 2DIAGNOSTIC, 53, -5.356676392239e-01, 2.511122887161e-05, 6.9359e+00, 9.4789e-02, - 2DIAGNOSTIC, 54, -5.357075347111e-01, 2.344456918433e-05, 7.0230e+00, 8.7164e-02, - 2DIAGNOSTIC, 55, -5.357576862560e-01, 2.264633955094e-05, 7.1071e+00, 8.4072e-02, - 2DIAGNOSTIC, 56, -5.357870537844e-01, 2.159376712363e-05, 7.2545e+00, 1.4738e-01, - 2DIAGNOSTIC, 57, -5.358179634812e-01, 1.889720263949e-05, 7.3657e+00, 1.1124e-01, - 2DIAGNOSTIC, 58, -5.358389553077e-01, 1.501027254155e-05, 7.4631e+00, 9.7363e-02, - 2DIAGNOSTIC, 59, -5.358574452962e-01, 1.056811247755e-05, 7.5593e+00, 9.6161e-02, - 2DIAGNOSTIC, 60, -5.359387453445e-01, 6.584645135796e-06, 7.6565e+00, 9.7249e-02, - 2DIAGNOSTIC, 61, -5.361441761602e-01, 8.186140614652e-06, 7.8142e+00, 1.5766e-01, - 2DIAGNOSTIC, 62, -5.361490492462e-01, 9.354316600707e-06, 7.9290e+00, 1.1485e-01, - 2DIAGNOSTIC, 63, -5.361517249881e-01, 9.797887676372e-06, 8.0578e+00, 1.2882e-01, - 2DIAGNOSTIC, 64, -5.361526728317e-01, 9.690922598671e-06, 8.1726e+00, 1.1472e-01, - 2DIAGNOSTIC, 65, -5.361603822687e-01, 9.158799004406e-06, 8.3198e+00, 1.4719e-01, - 2DIAGNOSTIC, 66, -5.361607915236e-01, 8.014286780246e-06, 8.4300e+00, 1.1023e-01, - 2DIAGNOSTIC, 67, -5.361578077354e-01, 6.402614775004e-06, 8.5234e+00, 9.3417e-02, - 2DIAGNOSTIC, 68, -5.361549512923e-01, 4.441003619193e-06, 8.6265e+00, 1.0313e-01, - 2DIAGNOSTIC, 69, -5.361569039453e-01, 2.313724229935e-06, 8.7226e+00, 9.6082e-02, - Elapsed time (stage 1): 8.8527e+00 - - -Total elapsed time: 1.3611e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:29:40 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:29:40 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x557c430a54f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.592, 68.3168, -110.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557c430aafa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb1a000e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x557c430a6850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.592, 68.3168, -110.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557c430a3f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb19c94f010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x557c430bdb80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.592, 68.3168, -110.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557c430aa550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb199290010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x557c430c2d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.592, 68.3168, -110.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557c430c0c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb195bd1010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x557c430c4f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.592, 68.3168, -110.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557c430c33a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb192512010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x557c430c5540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.592, 68.3168, -110.188] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x557c430c54d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fb18ee53010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.702772378663e-01, 1.797693134862e+308, 2.0430e-01, 2.0430e-01, - 2DIAGNOSTIC, 2, -4.732091448497e-01, 1.797693134862e+308, 2.0634e-01, 2.0401e-03, - 2DIAGNOSTIC, 3, -4.783485987876e-01, 1.797693134862e+308, 2.0838e-01, 2.0480e-03, - 2DIAGNOSTIC, 4, -4.880445025246e-01, 1.797693134862e+308, 2.1036e-01, 1.9741e-03, - 2DIAGNOSTIC, 5, -5.056967855263e-01, 1.797693134862e+308, 2.1240e-01, 2.0380e-03, - 2DIAGNOSTIC, 6, -5.405091974116e-01, 1.797693134862e+308, 2.1443e-01, 2.0320e-03, - 2DIAGNOSTIC, 7, -5.866611823545e-01, 1.797693134862e+308, 2.1652e-01, 2.0921e-03, - 2DIAGNOSTIC, 8, -5.871352274201e-01, 1.797693134862e+308, 2.1836e-01, 1.8361e-03, - 2DIAGNOSTIC, 9, -5.873774936014e-01, 1.797693134862e+308, 2.2018e-01, 1.8198e-03, - 2DIAGNOSTIC, 10, -5.880627213217e-01, 1.852227838754e-02, 2.2303e-01, 2.8541e-03, - 2DIAGNOSTIC, 11, -5.883621219655e-01, 1.574235537987e-02, 2.2526e-01, 2.2280e-03, - 2DIAGNOSTIC, 12, -5.883990572550e-01, 1.216890213387e-02, 2.2712e-01, 1.8611e-03, - 2DIAGNOSTIC, 13, -5.883020528463e-01, 8.315442410945e-03, 2.2900e-01, 1.8799e-03, - 2DIAGNOSTIC, 14, -5.881200902812e-01, 4.681213387929e-03, 2.3160e-01, 2.5959e-03, - 2DIAGNOSTIC, 15, -5.881315901051e-01, 1.733815286355e-03, 2.3350e-01, 1.9011e-03, - 2DIAGNOSTIC, 16, -5.881447244949e-01, 9.840746385630e-05, 2.3538e-01, 1.8799e-03, - 2DIAGNOSTIC, 17, -5.881539595387e-01, 5.049428073894e-05, 2.4153e-01, 6.1541e-03, - 2DIAGNOSTIC, 18, -5.881539595112e-01, 1.744295153566e-05, 2.4770e-01, 6.1681e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.880595606248e-01, 1.797693134862e+308, 4.8018e-01, 2.3248e-01, - 2DIAGNOSTIC, 2, -4.889726714966e-01, 1.797693134862e+308, 4.9301e-01, 1.2829e-02, - 2DIAGNOSTIC, 3, -4.897514347456e-01, 1.797693134862e+308, 5.0656e-01, 1.3552e-02, - 2DIAGNOSTIC, 4, -4.902751890744e-01, 1.797693134862e+308, 5.2008e-01, 1.3518e-02, - 2DIAGNOSTIC, 5, -4.903369982019e-01, 1.797693134862e+308, 5.3420e-01, 1.4119e-02, - 2DIAGNOSTIC, 6, -4.905134639109e-01, 1.797693134862e+308, 5.4845e-01, 1.4251e-02, - 2DIAGNOSTIC, 7, -4.908020739741e-01, 1.797693134862e+308, 5.6928e-01, 2.0831e-02, - 2DIAGNOSTIC, 8, -4.909563748440e-01, 1.797693134862e+308, 5.8411e-01, 1.4832e-02, - 2DIAGNOSTIC, 9, -4.909872825510e-01, 1.797693134862e+308, 5.9737e-01, 1.3262e-02, - 2DIAGNOSTIC, 10, -4.910420768999e-01, 3.431668758697e-04, 6.1062e-01, 1.3248e-02, - 2DIAGNOSTIC, 11, -4.913654390549e-01, 2.325059046310e-04, 6.2486e-01, 1.4238e-02, - 2DIAGNOSTIC, 12, -4.913163605047e-01, 1.600645146065e-04, 6.5331e-01, 2.8450e-02, - 2DIAGNOSTIC, 13, -4.913269516274e-01, 1.193627117207e-04, 6.6557e-01, 1.2258e-02, - 2DIAGNOSTIC, 14, -4.913173439217e-01, 9.548371993560e-05, 6.7760e-01, 1.2035e-02, - 2DIAGNOSTIC, 15, -4.913204360625e-01, 6.872541470584e-05, 6.8941e-01, 1.1809e-02, - 2DIAGNOSTIC, 16, -4.913247235655e-01, 4.534092816939e-05, 7.0116e-01, 1.1747e-02, - 2DIAGNOSTIC, 17, -4.913415996862e-01, 3.099940393278e-05, 7.1527e-01, 1.4110e-02, - 2DIAGNOSTIC, 18, -4.913693998624e-01, 2.157423872250e-05, 7.2915e-01, 1.3885e-02, - 2DIAGNOSTIC, 19, -4.913736469096e-01, 1.241300158491e-05, 7.4220e-01, 1.3045e-02, - 2DIAGNOSTIC, 20, -4.913764860579e-01, 4.572793325157e-06, 7.5548e-01, 1.3281e-02, - 2DIAGNOSTIC, 21, -4.913906872803e-01, 6.556729746122e-06, 7.6896e-01, 1.3483e-02, - 2DIAGNOSTIC, 22, -4.915012647681e-01, 9.479656326368e-06, 7.8259e-01, 1.3632e-02, - 2DIAGNOSTIC, 23, -4.915299825019e-01, 1.230786023741e-05, 7.9836e-01, 1.5769e-02, - 2DIAGNOSTIC, 24, -4.915416301416e-01, 1.394452974435e-05, 8.1431e-01, 1.5943e-02, - 2DIAGNOSTIC, 25, -4.915612690559e-01, 1.484339674137e-05, 8.3012e-01, 1.5810e-02, - 2DIAGNOSTIC, 26, -4.915947415793e-01, 1.522197790951e-05, 8.7856e-01, 4.8444e-02, - 2DIAGNOSTIC, 27, -4.915947343853e-01, 1.454598441710e-05, 8.9262e-01, 1.4056e-02, - 2DIAGNOSTIC, 28, -4.915947436163e-01, 1.323099809655e-05, 9.0498e-01, 1.2361e-02, - 2DIAGNOSTIC, 29, -4.915947592216e-01, 1.099092390594e-05, 9.1828e-01, 1.3301e-02, - 2DIAGNOSTIC, 30, -4.915947855907e-01, 8.037512540832e-06, 9.3224e-01, 1.3961e-02, - 2DIAGNOSTIC, 31, -4.915948301257e-01, 4.819395599050e-06, 9.4713e-01, 1.4889e-02, - 2DIAGNOSTIC, 32, -4.915949055295e-01, 3.435800138722e-06, 9.6127e-01, 1.4146e-02, - 2DIAGNOSTIC, 33, -4.915950326517e-01, 2.418383674728e-06, 9.7546e-01, 1.4187e-02, - 2DIAGNOSTIC, 34, -4.915952459851e-01, 1.522028838533e-06, 9.9041e-01, 1.4948e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.130467680466e-01, 1.797693134862e+308, 1.4107e+00, 4.2030e-01, - 2DIAGNOSTIC, 2, -4.131376638808e-01, 1.797693134862e+308, 1.5232e+00, 1.1254e-01, - 2DIAGNOSTIC, 3, -4.131821453465e-01, 1.797693134862e+308, 1.6159e+00, 9.2685e-02, - 2DIAGNOSTIC, 4, -4.132816935489e-01, 1.797693134862e+308, 1.7094e+00, 9.3468e-02, - 2DIAGNOSTIC, 5, -4.134144378542e-01, 1.797693134862e+308, 1.8022e+00, 9.2835e-02, - 2DIAGNOSTIC, 6, -4.139574227796e-01, 1.797693134862e+308, 1.9210e+00, 1.1873e-01, - 2DIAGNOSTIC, 7, -4.140623688462e-01, 1.797693134862e+308, 2.0792e+00, 1.5824e-01, - 2DIAGNOSTIC, 8, -4.140633094443e-01, 1.797693134862e+308, 2.1724e+00, 9.3178e-02, - 2DIAGNOSTIC, 9, -4.140649773346e-01, 1.797693134862e+308, 2.2788e+00, 1.0644e-01, - 2DIAGNOSTIC, 10, -4.140641074002e-01, 2.024663894364e-04, 2.4254e+00, 1.4657e-01, - 2DIAGNOSTIC, 11, -4.140637592827e-01, 1.632116982966e-04, 2.5329e+00, 1.0755e-01, - 2DIAGNOSTIC, 12, -4.140627373079e-01, 1.211797033372e-04, 2.6520e+00, 1.1904e-01, - 2DIAGNOSTIC, 13, -4.140627975400e-01, 7.765219295054e-05, 2.7593e+00, 1.0734e-01, - 2DIAGNOSTIC, 14, -4.140604740749e-01, 3.850380357935e-05, 2.8791e+00, 1.1977e-01, - 2DIAGNOSTIC, 15, -4.140599249791e-01, 6.673154503187e-06, 2.9862e+00, 1.0709e-01, - 2DIAGNOSTIC, 16, -4.140570138305e-01, 1.463382243258e-06, 3.0815e+00, 9.5317e-02, - 2DIAGNOSTIC, 17, -4.140568433556e-01, 1.149841249930e-06, 3.1746e+00, 9.3100e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.591219825052e-01, 1.797693134862e+308, 4.3969e+00, 1.2223e+00, - 2DIAGNOSTIC, 2, -3.592807614451e-01, 1.797693134862e+308, 5.0457e+00, 6.4882e-01, - 2DIAGNOSTIC, 3, -3.592787857877e-01, 1.797693134862e+308, 5.9343e+00, 8.8861e-01, - 2DIAGNOSTIC, 4, -3.592794270416e-01, 1.797693134862e+308, 6.5721e+00, 6.3777e-01, - 2DIAGNOSTIC, 5, -3.592794002987e-01, 1.797693134862e+308, 7.3977e+00, 8.2557e-01, - 2DIAGNOSTIC, 6, -3.592793068619e-01, 1.797693134862e+308, 7.9474e+00, 5.4970e-01, - 2DIAGNOSTIC, 7, -3.592791011785e-01, 1.797693134862e+308, 8.4926e+00, 5.4519e-01, - 2DIAGNOSTIC, 8, -3.592789277932e-01, 1.797693134862e+308, 9.1043e+00, 6.1171e-01, - 2DIAGNOSTIC, 9, -3.592788712304e-01, 1.797693134862e+308, 9.6717e+00, 5.6738e-01, - 2DIAGNOSTIC, 10, -3.592786882497e-01, 1.544201781695e-05, 1.0148e+01, 4.7582e-01, - 2DIAGNOSTIC, 11, -3.592785528708e-01, 2.680587095197e-06, 1.0674e+01, 5.2608e-01, - 2DIAGNOSTIC, 12, -3.592787504602e-01, 2.549994347900e-06, 1.1222e+01, 5.4867e-01, - 2DIAGNOSTIC, 13, -3.592788319058e-01, 2.331719968079e-06, 1.1834e+01, 6.1181e-01, - 2DIAGNOSTIC, 14, -3.592786750751e-01, 2.182270206083e-06, 1.2450e+01, 6.1548e-01, - 2DIAGNOSTIC, 15, -3.592787248454e-01, 2.062692880431e-06, 1.3202e+01, 7.5247e-01, - 2DIAGNOSTIC, 16, -3.592788097503e-01, 1.963117022427e-06, 1.4002e+01, 7.9979e-01, - 2DIAGNOSTIC, 17, -3.592786982732e-01, 1.862515547651e-06, 1.4617e+01, 6.1484e-01, - 2DIAGNOSTIC, 18, -3.592785829045e-01, 1.761237074113e-06, 1.5243e+01, 6.2681e-01, - 2DIAGNOSTIC, 19, -3.592784721448e-01, 1.664724793217e-06, 1.5860e+01, 6.1608e-01, - 2DIAGNOSTIC, 20, -3.592783643175e-01, 1.567522379918e-06, 1.6409e+01, 5.4965e-01, - 2DIAGNOSTIC, 21, -3.592782691102e-01, 1.472711749273e-06, 1.6953e+01, 5.4341e-01, - 2DIAGNOSTIC, 22, -3.592781953802e-01, 1.394838083778e-06, 1.7575e+01, 6.2258e-01, - 2DIAGNOSTIC, 23, -3.592782577006e-01, 1.333752581399e-06, 1.8179e+01, 6.0379e-01, - 2DIAGNOSTIC, 24, -3.592783199051e-01, 1.279137825431e-06, 1.8668e+01, 4.8884e-01, - 2DIAGNOSTIC, 25, -3.592781727598e-01, 1.229991165856e-06, 1.9225e+01, 5.5689e-01, - 2DIAGNOSTIC, 26, -3.592782233921e-01, 1.192990481916e-06, 1.9839e+01, 6.1457e-01, - 2DIAGNOSTIC, 27, -3.592787152173e-01, 1.172727054390e-06, 2.0532e+01, 6.9307e-01, - 2DIAGNOSTIC, 28, -3.592786341797e-01, 1.148407691651e-06, 2.1174e+01, 6.4214e-01, - 2DIAGNOSTIC, 29, -3.592785371062e-01, 1.119180277766e-06, 2.1719e+01, 5.4500e-01, - 2DIAGNOSTIC, 30, -3.592784601253e-01, 1.085310930217e-06, 2.2271e+01, 5.5145e-01, - 2DIAGNOSTIC, 31, -3.592782911299e-01, 1.044558394357e-06, 2.2855e+01, 5.8358e-01, - 2DIAGNOSTIC, 32, -3.592783743607e-01, 1.004612675624e-06, 2.3383e+01, 5.2890e-01, - Elapsed time (stage 0): 2.3725e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.703322423287e-01, 1.797693134862e+308, 1.8017e-01, 1.8017e-01, - 2DIAGNOSTIC, 2, -5.715704232122e-01, 1.797693134862e+308, 1.8223e-01, 2.0580e-03, - 2DIAGNOSTIC, 3, -5.734979148130e-01, 1.797693134862e+308, 1.8423e-01, 1.9948e-03, - 2DIAGNOSTIC, 4, -5.757209827478e-01, 1.797693134862e+308, 1.8627e-01, 2.0452e-03, - 2DIAGNOSTIC, 5, -5.774087580536e-01, 1.797693134862e+308, 1.8831e-01, 2.0359e-03, - 2DIAGNOSTIC, 6, -5.789737623185e-01, 1.797693134862e+308, 1.9041e-01, 2.0990e-03, - 2DIAGNOSTIC, 7, -5.801674378703e-01, 1.797693134862e+308, 1.9306e-01, 2.6550e-03, - 2DIAGNOSTIC, 8, -5.802552657680e-01, 1.797693134862e+308, 1.9564e-01, 2.5811e-03, - 2DIAGNOSTIC, 9, -5.803738879912e-01, 1.797693134862e+308, 1.9792e-01, 2.2731e-03, - 2DIAGNOSTIC, 10, -5.806715054398e-01, 1.240178481926e-03, 2.0015e-01, 2.2330e-03, - 2DIAGNOSTIC, 11, -5.808959391138e-01, 9.153135552760e-04, 2.0232e-01, 2.1720e-03, - 2DIAGNOSTIC, 12, -5.810211036225e-01, 6.178776134433e-04, 2.0496e-01, 2.6381e-03, - 2DIAGNOSTIC, 13, -5.810540412375e-01, 3.843319243386e-04, 2.0714e-01, 2.1868e-03, - 2DIAGNOSTIC, 14, -5.810717430887e-01, 2.280156313662e-04, 2.1026e-01, 3.1192e-03, - 2DIAGNOSTIC, 15, -5.810993102418e-01, 1.271494175121e-04, 2.1451e-01, 4.2500e-03, - 2DIAGNOSTIC, 16, -5.811059049095e-01, 7.462350812165e-05, 2.1736e-01, 2.8501e-03, - 2DIAGNOSTIC, 17, -5.811174110620e-01, 5.647426035995e-05, 2.1970e-01, 2.3351e-03, - 2DIAGNOSTIC, 18, -5.811413221509e-01, 3.843648161712e-05, 2.2220e-01, 2.5010e-03, - 2DIAGNOSTIC, 19, -5.812478704772e-01, 2.460361055603e-05, 2.2628e-01, 4.0810e-03, - 2DIAGNOSTIC, 20, -5.812486956440e-01, 1.716998952483e-05, 2.2910e-01, 2.8229e-03, - 2DIAGNOSTIC, 21, -5.812490555703e-01, 1.421456336233e-05, 2.3145e-01, 2.3489e-03, - 2DIAGNOSTIC, 22, -5.812498385572e-01, 1.317842058112e-05, 2.3383e-01, 2.3780e-03, - 2DIAGNOSTIC, 23, -5.812524441555e-01, 1.187414618863e-05, 2.3618e-01, 2.3460e-03, - 2DIAGNOSTIC, 24, -5.812568775638e-01, 1.009794802556e-05, 2.3858e-01, 2.4030e-03, - 2DIAGNOSTIC, 25, -5.812633714376e-01, 8.306161918076e-06, 2.4103e-01, 2.4540e-03, - 2DIAGNOSTIC, 26, -5.812728729335e-01, 6.325199247273e-06, 2.4595e-01, 4.9109e-03, - 2DIAGNOSTIC, 27, -5.812728956873e-01, 4.229121833184e-06, 2.4839e-01, 2.4469e-03, - 2DIAGNOSTIC, 28, -5.812729214775e-01, 2.364427946301e-06, 2.5062e-01, 2.2309e-03, - 2DIAGNOSTIC, 29, -5.812730268110e-01, 2.316715766525e-06, 2.5287e-01, 2.2511e-03, - 2DIAGNOSTIC, 30, -5.812733663119e-01, 2.174170695951e-06, 2.5506e-01, 2.1901e-03, - 2DIAGNOSTIC, 31, -5.812742973404e-01, 1.954330942529e-06, 2.5740e-01, 2.3348e-03, - 2DIAGNOSTIC, 32, -5.812762973858e-01, 1.703612707037e-06, 2.5960e-01, 2.1999e-03, - 2DIAGNOSTIC, 33, -5.812795916202e-01, 1.489643426673e-06, 2.6186e-01, 2.2619e-03, - 2DIAGNOSTIC, 34, -5.812847180106e-01, 1.374528035308e-06, 2.6438e-01, 2.5198e-03, - 2DIAGNOSTIC, 35, -5.812858738922e-01, 1.326630156763e-06, 2.6717e-01, 2.7919e-03, - 2DIAGNOSTIC, 36, -5.812890070018e-01, 1.414646591289e-06, 2.7037e-01, 3.1960e-03, - 2DIAGNOSTIC, 37, -5.812896945404e-01, 1.456476777972e-06, 2.7271e-01, 2.3420e-03, - 2DIAGNOSTIC, 38, -5.812922566629e-01, 1.472433591776e-06, 2.7525e-01, 2.5380e-03, - 2DIAGNOSTIC, 39, -5.813081114967e-01, 1.626632293850e-06, 2.7741e-01, 2.1610e-03, - 2DIAGNOSTIC, 40, -5.813146164535e-01, 1.774717917472e-06, 2.7951e-01, 2.0959e-03, - 2DIAGNOSTIC, 41, -5.813174324794e-01, 1.867653580651e-06, 2.8331e-01, 3.8080e-03, - 2DIAGNOSTIC, 42, -5.813175369818e-01, 1.879041959352e-06, 2.8580e-01, 2.4879e-03, - 2DIAGNOSTIC, 43, -5.813175604426e-01, 1.820097324311e-06, 2.8806e-01, 2.2621e-03, - 2DIAGNOSTIC, 44, -5.813176005658e-01, 1.715555127634e-06, 2.9029e-01, 2.2252e-03, - 2DIAGNOSTIC, 45, -5.813177829392e-01, 1.533048820709e-06, 2.9253e-01, 2.2390e-03, - 2DIAGNOSTIC, 46, -5.813182999456e-01, 1.320481698902e-06, 2.9477e-01, 2.2392e-03, - 2DIAGNOSTIC, 47, -5.813193349627e-01, 1.076909041057e-06, 2.9702e-01, 2.2540e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.843828955916e-01, 1.797693134862e+308, 4.9755e-01, 2.0053e-01, - 2DIAGNOSTIC, 2, -4.854355601598e-01, 1.797693134862e+308, 5.1358e-01, 1.6030e-02, - 2DIAGNOSTIC, 3, -4.865393794375e-01, 1.797693134862e+308, 5.2808e-01, 1.4500e-02, - 2DIAGNOSTIC, 4, -4.873913595006e-01, 1.797693134862e+308, 5.4213e-01, 1.4046e-02, - 2DIAGNOSTIC, 5, -4.881059304964e-01, 1.797693134862e+308, 5.5615e-01, 1.4024e-02, - 2DIAGNOSTIC, 6, -4.888399744748e-01, 1.797693134862e+308, 5.7223e-01, 1.6078e-02, - 2DIAGNOSTIC, 7, -4.890639985737e-01, 1.797693134862e+308, 5.9195e-01, 1.9717e-02, - 2DIAGNOSTIC, 8, -4.891852952714e-01, 1.797693134862e+308, 6.0787e-01, 1.5920e-02, - 2DIAGNOSTIC, 9, -4.892400563925e-01, 1.797693134862e+308, 6.2302e-01, 1.5153e-02, - 2DIAGNOSTIC, 10, -4.893642270859e-01, 6.479204073633e-04, 6.3908e-01, 1.6066e-02, - 2DIAGNOSTIC, 11, -4.895979347188e-01, 4.513625305509e-04, 6.5523e-01, 1.6143e-02, - 2DIAGNOSTIC, 12, -4.899832061130e-01, 3.162051576886e-04, 6.7323e-01, 1.8003e-02, - 2DIAGNOSTIC, 13, -4.900905426846e-01, 2.272551027590e-04, 6.8742e-01, 1.4190e-02, - 2DIAGNOSTIC, 14, -4.901428389129e-01, 1.680459346239e-04, 7.0153e-01, 1.4111e-02, - 2DIAGNOSTIC, 15, -4.901716210840e-01, 1.299370096803e-04, 7.1652e-01, 1.4993e-02, - 2DIAGNOSTIC, 16, -4.901733017174e-01, 1.113317478088e-04, 7.3519e-01, 1.8665e-02, - 2DIAGNOSTIC, 17, -4.901717313478e-01, 9.221426900736e-05, 7.5377e-01, 1.8583e-02, - 2DIAGNOSTIC, 18, -4.901754740451e-01, 7.094852653459e-05, 7.6872e-01, 1.4944e-02, - 2DIAGNOSTIC, 19, -4.901986551515e-01, 4.802661302705e-05, 7.8540e-01, 1.6678e-02, - 2DIAGNOSTIC, 20, -4.901953800869e-01, 2.656284257573e-05, 8.0352e-01, 1.8122e-02, - 2DIAGNOSTIC, 21, -4.901975459946e-01, 1.111300220769e-05, 8.1811e-01, 1.4592e-02, - 2DIAGNOSTIC, 22, -4.901893318735e-01, 6.091024630173e-06, 8.3493e-01, 1.6824e-02, - 2DIAGNOSTIC, 23, -4.901937765637e-01, 3.869824208136e-06, 8.5008e-01, 1.5148e-02, - 2DIAGNOSTIC, 24, -4.901950398971e-01, 2.863784118387e-06, 8.6537e-01, 1.5292e-02, - 2DIAGNOSTIC, 25, -4.903130215476e-01, 5.201047581845e-06, 8.8381e-01, 1.8432e-02, - 2DIAGNOSTIC, 26, -4.903609501892e-01, 8.034486315034e-06, 9.0068e-01, 1.6872e-02, - 2DIAGNOSTIC, 27, -4.903721952609e-01, 1.023098289148e-05, 9.1953e-01, 1.8854e-02, - 2DIAGNOSTIC, 28, -4.903807198886e-01, 1.170144127279e-05, 9.3441e-01, 1.4883e-02, - 2DIAGNOSTIC, 29, -4.904061759790e-01, 1.305032751281e-05, 9.5323e-01, 1.8813e-02, - 2DIAGNOSTIC, 30, -4.904340697098e-01, 1.360330101664e-05, 9.6974e-01, 1.6511e-02, - 2DIAGNOSTIC, 31, -4.904307971794e-01, 1.288773658931e-05, 9.9149e-01, 2.1748e-02, - 2DIAGNOSTIC, 32, -4.904308183250e-01, 1.098550927265e-05, 1.0098e+00, 1.8298e-02, - 2DIAGNOSTIC, 33, -4.904308228843e-01, 8.370107091558e-06, 1.0289e+00, 1.9165e-02, - 2DIAGNOSTIC, 34, -4.904308236356e-01, 5.172153689639e-06, 1.0795e+00, 5.0532e-02, - 2DIAGNOSTIC, 35, -4.904308236356e-01, 3.684541366109e-06, 1.1019e+00, 2.2411e-02, - 2DIAGNOSTIC, 36, -4.904308236356e-01, 2.791191772704e-06, 1.1182e+00, 1.6344e-02, - 2DIAGNOSTIC, 37, -4.904308236356e-01, 1.949563446835e-06, 1.1343e+00, 1.6108e-02, - 2DIAGNOSTIC, 38, -4.904308236356e-01, 1.172045956677e-06, 1.1505e+00, 1.6123e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.125424193108e-01, 1.797693134862e+308, 1.5338e+00, 3.8338e-01, - 2DIAGNOSTIC, 2, -4.130495571198e-01, 1.797693134862e+308, 1.6357e+00, 1.0183e-01, - 2DIAGNOSTIC, 3, -4.134358620328e-01, 1.797693134862e+308, 1.7375e+00, 1.0179e-01, - 2DIAGNOSTIC, 4, -4.136403734259e-01, 1.797693134862e+308, 1.8400e+00, 1.0250e-01, - 2DIAGNOSTIC, 5, -4.138495649987e-01, 1.797693134862e+308, 1.9583e+00, 1.1830e-01, - 2DIAGNOSTIC, 6, -4.140024368772e-01, 1.797693134862e+308, 2.1442e+00, 1.8589e-01, - 2DIAGNOSTIC, 7, -4.140093170615e-01, 1.797693134862e+308, 2.2429e+00, 9.8769e-02, - 2DIAGNOSTIC, 8, -4.140218476539e-01, 1.797693134862e+308, 2.3307e+00, 8.7778e-02, - 2DIAGNOSTIC, 9, -4.140376938514e-01, 1.797693134862e+308, 2.4175e+00, 8.6798e-02, - 2DIAGNOSTIC, 10, -4.140558581753e-01, 2.083084524077e-04, 2.5081e+00, 9.0632e-02, - 2DIAGNOSTIC, 11, -4.140776046956e-01, 1.234421207575e-04, 2.5957e+00, 8.7609e-02, - 2DIAGNOSTIC, 12, -4.141007327605e-01, 7.193040900115e-05, 2.6866e+00, 9.0829e-02, - 2DIAGNOSTIC, 13, -4.141345551236e-01, 4.422754632830e-05, 2.7774e+00, 9.0817e-02, - 2DIAGNOSTIC, 14, -4.141933769681e-01, 2.937624935927e-05, 2.8902e+00, 1.1282e-01, - 2DIAGNOSTIC, 15, -4.142363113566e-01, 2.532720041991e-05, 2.9915e+00, 1.0133e-01, - 2DIAGNOSTIC, 16, -4.142827380485e-01, 2.819896480800e-05, 3.1899e+00, 1.9840e-01, - 2DIAGNOSTIC, 17, -4.142810082350e-01, 2.851485448019e-05, 3.2986e+00, 1.0864e-01, - 2DIAGNOSTIC, 18, -4.142809520970e-01, 2.683133599452e-05, 3.3888e+00, 9.0257e-02, - 2DIAGNOSTIC, 19, -4.142812616402e-01, 2.357130716039e-05, 3.4962e+00, 1.0739e-01, - 2DIAGNOSTIC, 20, -4.142824995923e-01, 1.923642076536e-05, 3.5983e+00, 1.0210e-01, - 2DIAGNOSTIC, 21, -4.142830918566e-01, 1.439267228157e-05, 3.7165e+00, 1.1813e-01, - 2DIAGNOSTIC, 22, -4.142840128450e-01, 9.547120117144e-06, 3.8185e+00, 1.0199e-01, - 2DIAGNOSTIC, 23, -4.142841299012e-01, 5.366353311796e-06, 3.9282e+00, 1.0975e-01, - 2DIAGNOSTIC, 24, -4.142857249597e-01, 2.869322200762e-06, 4.0312e+00, 1.0303e-01, - 2DIAGNOSTIC, 25, -4.142886748333e-01, 1.648620370186e-06, 4.1322e+00, 1.0094e-01, - 2DIAGNOSTIC, 26, -4.142916863833e-01, 1.791145048904e-06, 4.2209e+00, 8.8716e-02, - 2DIAGNOSTIC, 27, -4.142945903731e-01, 1.899119883894e-06, 4.3191e+00, 9.8170e-02, - 2DIAGNOSTIC, 28, -4.142966350339e-01, 1.980329141713e-06, 4.4322e+00, 1.1318e-01, - 2DIAGNOSTIC, 29, -4.142977820563e-01, 2.010122828980e-06, 4.5203e+00, 8.8035e-02, - 2DIAGNOSTIC, 30, -4.142978526335e-01, 1.980851949482e-06, 4.6077e+00, 8.7461e-02, - 2DIAGNOSTIC, 31, -4.142981024274e-01, 1.884447430489e-06, 4.6959e+00, 8.8169e-02, - 2DIAGNOSTIC, 32, -4.142985153396e-01, 1.741585352932e-06, 4.9882e+00, 2.9231e-01, - 2DIAGNOSTIC, 33, -4.142985153387e-01, 1.538586619450e-06, 5.2624e+00, 2.7419e-01, - 2DIAGNOSTIC, 34, -4.142985153387e-01, 1.324840587721e-06, 5.3763e+00, 1.1387e-01, - 2DIAGNOSTIC, 35, -4.142985153387e-01, 1.143873222285e-06, 5.4948e+00, 1.1854e-01, - 2DIAGNOSTIC, 36, -4.142985153387e-01, 1.007197123870e-06, 5.6131e+00, 1.1825e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.587001872397e-01, 1.797693134862e+308, 6.8900e+00, 1.2769e+00, - 2DIAGNOSTIC, 2, -3.589572346587e-01, 1.797693134862e+308, 7.4926e+00, 6.0258e-01, - 2DIAGNOSTIC, 3, -3.591071430810e-01, 1.797693134862e+308, 8.1291e+00, 6.3652e-01, - 2DIAGNOSTIC, 4, -3.592142765934e-01, 1.797693134862e+308, 8.7286e+00, 5.9951e-01, - 2DIAGNOSTIC, 5, -3.593760408221e-01, 1.797693134862e+308, 9.6170e+00, 8.8844e-01, - 2DIAGNOSTIC, 6, -3.593941951494e-01, 1.797693134862e+308, 1.0360e+01, 7.4257e-01, - 2DIAGNOSTIC, 7, -3.593922162279e-01, 1.797693134862e+308, 1.1102e+01, 7.4232e-01, - 2DIAGNOSTIC, 8, -3.593918708157e-01, 1.797693134862e+308, 1.2070e+01, 9.6763e-01, - 2DIAGNOSTIC, 9, -3.593920038588e-01, 1.797693134862e+308, 1.2743e+01, 6.7383e-01, - 2DIAGNOSTIC, 10, -3.593919470247e-01, 1.105856070234e-04, 1.3404e+01, 6.6044e-01, - 2DIAGNOSTIC, 11, -3.593913545399e-01, 6.149244892420e-05, 1.4081e+01, 6.7763e-01, - 2DIAGNOSTIC, 12, -3.593913610183e-01, 3.225145182285e-05, 1.4828e+01, 7.4700e-01, - 2DIAGNOSTIC, 13, -3.593911810025e-01, 1.389944904943e-05, 1.5456e+01, 6.2753e-01, - 2DIAGNOSTIC, 14, -3.593911081466e-01, 2.927379490300e-06, 1.6113e+01, 6.5727e-01, - 2DIAGNOSTIC, 15, -3.593910033032e-01, 1.855385380820e-06, 1.6702e+01, 5.8847e-01, - 2DIAGNOSTIC, 16, -3.593908928345e-01, 1.837059388499e-06, 1.7231e+01, 5.2887e-01, - 2DIAGNOSTIC, 17, -3.593907931934e-01, 1.738786685114e-06, 1.7835e+01, 6.0437e-01, - 2DIAGNOSTIC, 18, -3.593908381963e-01, 1.650022635198e-06, 1.8427e+01, 5.9191e-01, - 2DIAGNOSTIC, 19, -3.593908672673e-01, 1.587945699530e-06, 1.8975e+01, 5.4809e-01, - 2DIAGNOSTIC, 20, -3.593907900638e-01, 1.535409319721e-06, 1.9509e+01, 5.3364e-01, - 2DIAGNOSTIC, 21, -3.593907463250e-01, 1.469167839177e-06, 2.0100e+01, 5.9091e-01, - 2DIAGNOSTIC, 22, -3.593908837782e-01, 1.418600937171e-06, 2.0765e+01, 6.6544e-01, - 2DIAGNOSTIC, 23, -3.593910025670e-01, 1.372660968578e-06, 2.1450e+01, 6.8515e-01, - 2DIAGNOSTIC, 24, -3.593909233237e-01, 1.326443977864e-06, 2.2106e+01, 6.5596e-01, - 2DIAGNOSTIC, 25, -3.593908523317e-01, 1.278604441185e-06, 2.2770e+01, 6.6390e-01, - 2DIAGNOSTIC, 26, -3.593906482447e-01, 1.224539051874e-06, 2.3396e+01, 6.2649e-01, - 2DIAGNOSTIC, 27, -3.593903510617e-01, 1.162740232000e-06, 2.4182e+01, 7.8545e-01, - 2DIAGNOSTIC, 28, -3.593903958249e-01, 1.109368287483e-06, 2.4881e+01, 6.9937e-01, - 2DIAGNOSTIC, 29, -3.593900818019e-01, 1.054360429194e-06, 2.5549e+01, 6.6778e-01, - 2DIAGNOSTIC, 30, -3.593899971029e-01, 1.003100166312e-06, 2.6128e+01, 5.7919e-01, - Elapsed time (stage 1): 2.6471e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.348772539797e-01, 1.797693134862e+308, 2.4242e-01, 2.4242e-01, - 1DIAGNOSTIC, 2, -8.486383110653e-01, 1.797693134862e+308, 3.4382e-01, 1.0140e-01, - 1DIAGNOSTIC, 3, -8.587762192013e-01, 1.797693134862e+308, 4.3708e-01, 9.3261e-02, - 1DIAGNOSTIC, 4, -8.666376015761e-01, 1.797693134862e+308, 5.3510e-01, 9.8021e-02, - 1DIAGNOSTIC, 5, -8.729925207072e-01, 1.797693134862e+308, 6.2896e-01, 9.3854e-02, - 1DIAGNOSTIC, 6, -8.780203692628e-01, 1.797693134862e+308, 7.2397e-01, 9.5012e-02, - 1DIAGNOSTIC, 7, -8.819692474387e-01, 1.797693134862e+308, 8.2158e-01, 9.7614e-02, - 1DIAGNOSTIC, 8, -8.852703442435e-01, 1.797693134862e+308, 9.2065e-01, 9.9061e-02, - 1DIAGNOSTIC, 9, -8.879949479959e-01, 1.797693134862e+308, 1.0261e+00, 1.0545e-01, - 1DIAGNOSTIC, 10, -8.902965643482e-01, 3.803054376740e-03, 1.1230e+00, 9.6891e-02, - 1DIAGNOSTIC, 11, -8.919941033696e-01, 2.735352177758e-03, 1.2197e+00, 9.6729e-02, - 1DIAGNOSTIC, 12, -8.933936435311e-01, 2.010684539920e-03, 1.3160e+00, 9.6307e-02, - 1DIAGNOSTIC, 13, -8.944305190919e-01, 1.494364062145e-03, 1.4144e+00, 9.8337e-02, - 1DIAGNOSTIC, 14, -8.953163889038e-01, 1.117799934513e-03, 1.5132e+00, 9.8849e-02, - 1DIAGNOSTIC, 15, -8.960923687430e-01, 8.425775832379e-04, 1.6096e+00, 9.6347e-02, - 1DIAGNOSTIC, 16, -8.967423694963e-01, 6.387356349108e-04, 1.7094e+00, 9.9805e-02, - 1DIAGNOSTIC, 17, -8.972448816815e-01, 4.842530696700e-04, 1.8021e+00, 9.2709e-02, - 1DIAGNOSTIC, 18, -8.976593423380e-01, 3.685025556921e-04, 1.8982e+00, 9.6170e-02, - 1DIAGNOSTIC, 19, -8.979880225548e-01, 2.822774778351e-04, 1.9952e+00, 9.7000e-02, - 1DIAGNOSTIC, 20, -8.982250139655e-01, 2.191293142460e-04, 2.0897e+00, 9.4443e-02, - 1DIAGNOSTIC, 21, -8.983961293554e-01, 1.700716462967e-04, 2.1829e+00, 9.3223e-02, - 1DIAGNOSTIC, 22, -8.985144716377e-01, 1.317580163050e-04, 2.2805e+00, 9.7601e-02, - 1DIAGNOSTIC, 23, -8.985992168580e-01, 1.001188622931e-04, 2.3870e+00, 1.0645e-01, - 1DIAGNOSTIC, 24, -8.986465687989e-01, 7.421686401836e-05, 2.4869e+00, 9.9918e-02, - 1DIAGNOSTIC, 25, -8.986604568081e-01, 5.357888677768e-05, 2.5848e+00, 9.7878e-02, - 1DIAGNOSTIC, 26, -8.986453854313e-01, 3.737835594329e-05, 2.6798e+00, 9.5025e-02, - 1DIAGNOSTIC, 27, -8.985773903990e-01, 2.407948790457e-05, 2.7775e+00, 9.7679e-02, - 1DIAGNOSTIC, 28, -8.985087878463e-01, 1.349582445016e-05, 2.8712e+00, 9.3721e-02, - 1DIAGNOSTIC, 29, -8.984247305458e-01, 5.151170892684e-06, 2.9665e+00, 9.5275e-02, - 1DIAGNOSTIC, 30, -8.983314956787e-01, -1.500848909389e-06, 3.0608e+00, 9.4387e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.777092653909e-01, 1.797693134862e+308, 3.8973e+00, 8.3648e-01, - 1DIAGNOSTIC, 2, -8.802042877648e-01, 1.797693134862e+308, 4.5646e+00, 6.6730e-01, - 1DIAGNOSTIC, 3, -8.837401006610e-01, 1.797693134862e+308, 5.2341e+00, 6.6943e-01, - 1DIAGNOSTIC, 4, -8.876938292265e-01, 1.797693134862e+308, 5.9005e+00, 6.6647e-01, - 1DIAGNOSTIC, 5, -8.907445941099e-01, 1.797693134862e+308, 6.5621e+00, 6.6159e-01, - 1DIAGNOSTIC, 6, -8.933412118128e-01, 1.797693134862e+308, 7.2341e+00, 6.7200e-01, - 1DIAGNOSTIC, 7, -8.955856300750e-01, 1.797693134862e+308, 7.9030e+00, 6.6893e-01, - 1DIAGNOSTIC, 8, -8.975520232018e-01, 1.797693134862e+308, 8.5610e+00, 6.5800e-01, - 1DIAGNOSTIC, 9, -8.991961424451e-01, 1.797693134862e+308, 9.1975e+00, 6.3641e-01, - 1DIAGNOSTIC, 10, -9.006769090030e-01, 1.706248564302e-03, 9.8495e+00, 6.5210e-01, - 1DIAGNOSTIC, 11, -9.020065813516e-01, 1.400211920085e-03, 1.0518e+01, 6.6814e-01, - 1DIAGNOSTIC, 12, -9.030969225484e-01, 1.114192176610e-03, 1.1148e+01, 6.2995e-01, - 1DIAGNOSTIC, 13, -9.040986738172e-01, 8.815509397596e-04, 1.1794e+01, 6.4609e-01, - 1DIAGNOSTIC, 14, -9.050203637127e-01, 7.121265891564e-04, 1.2467e+01, 6.7326e-01, - 1DIAGNOSTIC, 15, -9.058752273342e-01, 5.824165535707e-04, 1.3097e+01, 6.2981e-01, - 1DIAGNOSTIC, 16, -9.066561434590e-01, 4.820283525230e-04, 1.3735e+01, 6.3782e-01, - 1DIAGNOSTIC, 17, -9.073694583776e-01, 4.038823890251e-04, 1.4395e+01, 6.6052e-01, - 1DIAGNOSTIC, 18, -9.080488845890e-01, 3.434470767657e-04, 1.5049e+01, 6.5391e-01, - 1DIAGNOSTIC, 19, -9.086801747034e-01, 2.952212294473e-04, 1.5699e+01, 6.4950e-01, - 1DIAGNOSTIC, 20, -9.092786527215e-01, 2.570592613836e-04, 1.6335e+01, 6.3688e-01, - 1DIAGNOSTIC, 21, -9.098312796423e-01, 2.267988428086e-04, 1.6984e+01, 6.4862e-01, - 1DIAGNOSTIC, 22, -9.103480768162e-01, 2.010993221436e-04, 1.7651e+01, 6.6725e-01, - 1DIAGNOSTIC, 23, -9.108326707836e-01, 1.791468309177e-04, 1.8296e+01, 6.4484e-01, - 1DIAGNOSTIC, 24, -9.112736396527e-01, 1.600798293099e-04, 1.8935e+01, 6.3910e-01, - 1DIAGNOSTIC, 25, -9.116970142440e-01, 1.435888655867e-04, 1.9612e+01, 6.7670e-01, - 1DIAGNOSTIC, 26, -9.121030372641e-01, 1.292229461892e-04, 2.0270e+01, 6.5832e-01, - 1DIAGNOSTIC, 27, -9.124812994295e-01, 1.164610187115e-04, 2.0933e+01, 6.6289e-01, - 1DIAGNOSTIC, 28, -9.128427254923e-01, 1.053212313286e-04, 2.1615e+01, 6.8183e-01, - 1DIAGNOSTIC, 29, -9.131850088357e-01, 9.556450677046e-05, 2.2282e+01, 6.6717e-01, - 1DIAGNOSTIC, 30, -9.135117146239e-01, 8.712661714589e-05, 2.2954e+01, 6.7175e-01, - 1DIAGNOSTIC, 31, -9.138184335463e-01, 7.970735141014e-05, 2.3622e+01, 6.6780e-01, - 1DIAGNOSTIC, 32, -9.141093640559e-01, 7.314411316084e-05, 2.4266e+01, 6.4427e-01, - 1DIAGNOSTIC, 33, -9.143856434812e-01, 6.730654606536e-05, 2.4914e+01, 6.4814e-01, - 1DIAGNOSTIC, 34, -9.146529006147e-01, 6.198634042887e-05, 2.5556e+01, 6.4218e-01, - 1DIAGNOSTIC, 35, -9.149114556615e-01, 5.721898315599e-05, 2.6218e+01, 6.6151e-01, - 1DIAGNOSTIC, 36, -9.151507341573e-01, 5.292692976396e-05, 2.6862e+01, 6.4441e-01, - 1DIAGNOSTIC, 37, -9.153657480494e-01, 4.889111114029e-05, 2.7508e+01, 6.4583e-01, - 1DIAGNOSTIC, 38, -9.155731419472e-01, 4.514140091218e-05, 2.8142e+01, 6.3428e-01, - 1DIAGNOSTIC, 39, -9.157667311974e-01, 4.162220871475e-05, 2.8794e+01, 6.5198e-01, - 1DIAGNOSTIC, 40, -9.159379032802e-01, 3.824446774676e-05, 2.9434e+01, 6.3971e-01, - 1DIAGNOSTIC, 41, -9.161055566039e-01, 3.504693487665e-05, 3.0076e+01, 6.4223e-01, - 1DIAGNOSTIC, 42, -9.162605555450e-01, 3.202165731081e-05, 3.0721e+01, 6.4427e-01, - 1DIAGNOSTIC, 43, -9.164119758111e-01, 2.923249950343e-05, 3.1378e+01, 6.5792e-01, - 1DIAGNOSTIC, 44, -9.165407069887e-01, 2.663099068789e-05, 3.2022e+01, 6.4367e-01, - 1DIAGNOSTIC, 45, -9.166688147180e-01, 2.433094959650e-05, 3.2662e+01, 6.4039e-01, - 1DIAGNOSTIC, 46, -9.167893130111e-01, 2.229401618712e-05, 3.3305e+01, 6.4250e-01, - 1DIAGNOSTIC, 47, -9.169019111738e-01, 2.043116520009e-05, 3.3967e+01, 6.6232e-01, - 1DIAGNOSTIC, 48, -9.170072655018e-01, 1.876947132121e-05, 3.4614e+01, 6.4684e-01, - 1DIAGNOSTIC, 49, -9.170963906157e-01, 1.722761524979e-05, 3.5275e+01, 6.6044e-01, - 1DIAGNOSTIC, 50, -9.171841349132e-01, 1.576170571777e-05, 3.5927e+01, 6.5219e-01, - 1DIAGNOSTIC, 51, -9.172810836263e-01, 1.450830249501e-05, 3.6585e+01, 6.5792e-01, - 1DIAGNOSTIC, 52, -9.173626489322e-01, 1.337340406288e-05, 3.7224e+01, 6.3974e-01, - 1DIAGNOSTIC, 53, -9.174381625849e-01, 1.238271081666e-05, 3.7862e+01, 6.3737e-01, - 1DIAGNOSTIC, 54, -9.175084873162e-01, 1.143871516892e-05, 3.8499e+01, 6.3732e-01, - 1DIAGNOSTIC, 55, -9.175667013527e-01, 1.053418433025e-05, 3.9162e+01, 6.6310e-01, - 1DIAGNOSTIC, 56, -9.176296180471e-01, 9.717294857017e-06, 3.9816e+01, 6.5412e-01, - 1DIAGNOSTIC, 57, -9.176864483288e-01, 8.966239594239e-06, 4.0485e+01, 6.6893e-01, - 1DIAGNOSTIC, 58, -9.177212666593e-01, 8.179966688185e-06, 4.1134e+01, 6.4854e-01, - 1DIAGNOSTIC, 59, -9.177702459895e-01, 7.413568248193e-06, 4.1798e+01, 6.6436e-01, - 1DIAGNOSTIC, 60, -9.178143976152e-01, 6.688179324751e-06, 4.2471e+01, 6.7297e-01, - 1DIAGNOSTIC, 61, -9.178637654988e-01, 6.134548846206e-06, 4.3139e+01, 6.6798e-01, - 1DIAGNOSTIC, 62, -9.179104745785e-01, 5.696556869293e-06, 4.3806e+01, 6.6701e-01, - 1DIAGNOSTIC, 63, -9.179540728196e-01, 5.358162137349e-06, 4.4447e+01, 6.4067e-01, - 1DIAGNOSTIC, 64, -9.180008359278e-01, 5.130086834448e-06, 4.5105e+01, 6.5770e-01, - 1DIAGNOSTIC, 65, -9.180376788952e-01, 4.911699994441e-06, 4.5756e+01, 6.5199e-01, - 1DIAGNOSTIC, 66, -9.180788005000e-01, 4.760072147062e-06, 4.6431e+01, 6.7408e-01, - 1DIAGNOSTIC, 67, -9.181186385053e-01, 4.647888961141e-06, 4.7093e+01, 6.6200e-01, - 1DIAGNOSTIC, 68, -9.181494430629e-01, 4.432966966613e-06, 4.7765e+01, 6.7239e-01, - 1DIAGNOSTIC, 69, -9.181809978454e-01, 4.203433847171e-06, 4.8416e+01, 6.5060e-01, - 1DIAGNOSTIC, 70, -9.182185695571e-01, 3.980017433767e-06, 4.9075e+01, 6.5954e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.826547917432e-01, 1.797693134862e+308, 5.4702e+01, 5.6266e+00, - 1DIAGNOSTIC, 2, -8.851571745944e-01, 1.797693134862e+308, 6.0023e+01, 5.3212e+00, - 1DIAGNOSTIC, 3, -8.877513962635e-01, 1.797693134862e+308, 6.5359e+01, 5.3360e+00, - 1DIAGNOSTIC, 4, -8.900100507630e-01, 1.797693134862e+308, 7.0678e+01, 5.3192e+00, - 1DIAGNOSTIC, 5, -8.919029364624e-01, 1.797693134862e+308, 7.6056e+01, 5.3782e+00, - 1DIAGNOSTIC, 6, -8.935188804272e-01, 1.797693134862e+308, 8.1359e+01, 5.3024e+00, - 1DIAGNOSTIC, 7, -8.948013105369e-01, 1.797693134862e+308, 8.6698e+01, 5.3389e+00, - 1DIAGNOSTIC, 8, -8.959192720929e-01, 1.797693134862e+308, 9.2028e+01, 5.3305e+00, - 1DIAGNOSTIC, 9, -8.969138723008e-01, 1.797693134862e+308, 9.7417e+01, 5.3891e+00, - 1DIAGNOSTIC, 10, -8.978002969674e-01, 1.075923013803e-03, 1.0276e+02, 5.3400e+00, - 1DIAGNOSTIC, 11, -8.986238362948e-01, 8.478355154021e-04, 1.0811e+02, 5.3528e+00, - 1DIAGNOSTIC, 12, -8.993918670303e-01, 6.678135257332e-04, 1.1343e+02, 5.3220e+00, - 1DIAGNOSTIC, 13, -9.001242044115e-01, 5.360289319102e-04, 1.1881e+02, 5.3747e+00, - 1DIAGNOSTIC, 14, -9.008429910766e-01, 4.415283774975e-04, 1.2417e+02, 5.3638e+00, - 1DIAGNOSTIC, 15, -9.015497014968e-01, 3.739754888185e-04, 1.2954e+02, 5.3666e+00, - 1DIAGNOSTIC, 16, -9.021558218943e-01, 3.244076118259e-04, 1.3490e+02, 5.3661e+00, - 1DIAGNOSTIC, 17, -9.027752964808e-01, 2.861465825457e-04, 1.4028e+02, 5.3795e+00, - 1DIAGNOSTIC, 18, -9.034094668856e-01, 2.564191318278e-04, 1.4562e+02, 5.3381e+00, - 1DIAGNOSTIC, 19, -9.040702873083e-01, 2.335238485809e-04, 1.5100e+02, 5.3836e+00, - 1DIAGNOSTIC, 20, -9.047609539936e-01, 2.160635425767e-04, 1.5639e+02, 5.3821e+00, - 1DIAGNOSTIC, 21, -9.054942055422e-01, 2.035145737887e-04, 1.6178e+02, 5.3895e+00, - 1DIAGNOSTIC, 22, -9.062771812193e-01, 1.953258373373e-04, 1.6711e+02, 5.3348e+00, - 1DIAGNOSTIC, 23, -9.071246028235e-01, 1.911811508070e-04, 1.7249e+02, 5.3831e+00, - 1DIAGNOSTIC, 24, -9.079108652734e-01, 1.891470296709e-04, 1.7788e+02, 5.3845e+00, - 1DIAGNOSTIC, 25, -9.085523865814e-01, 1.864951061493e-04, 1.8322e+02, 5.3394e+00, - 1DIAGNOSTIC, 26, -9.091976259695e-01, 1.816948801776e-04, 1.8854e+02, 5.3251e+00, - 1DIAGNOSTIC, 27, -9.097294005155e-01, 1.735432860773e-04, 1.9391e+02, 5.3627e+00, - 1DIAGNOSTIC, 28, -9.101738932435e-01, 1.617147302043e-04, 1.9924e+02, 5.3331e+00, - 1DIAGNOSTIC, 29, -9.105505403933e-01, 1.467038817214e-04, 2.0459e+02, 5.3492e+00, - 1DIAGNOSTIC, 30, -9.108782879172e-01, 1.295410793318e-04, 2.0992e+02, 5.3309e+00, - 1DIAGNOSTIC, 31, -9.111651974234e-01, 1.115954442511e-04, 2.1529e+02, 5.3692e+00, - 1DIAGNOSTIC, 32, -9.112899921847e-01, 9.310247038655e-05, 2.2064e+02, 5.3521e+00, - 1DIAGNOSTIC, 33, -9.114239938646e-01, 7.628858874861e-05, 2.2602e+02, 5.3775e+00, - 1DIAGNOSTIC, 34, -9.115618625322e-01, 6.180880719357e-05, 2.3138e+02, 5.3591e+00, - 1DIAGNOSTIC, 35, -9.117037119229e-01, 4.931553778609e-05, 2.3673e+02, 5.3513e+00, - 1DIAGNOSTIC, 36, -9.118522898522e-01, 3.977445527543e-05, 2.4213e+02, 5.3981e+00, - 1DIAGNOSTIC, 37, -9.120101179177e-01, 3.286435948715e-05, 2.4752e+02, 5.3937e+00, - 1DIAGNOSTIC, 38, -9.121773173800e-01, 2.829315662227e-05, 2.5286e+02, 5.3397e+00, - 1DIAGNOSTIC, 39, -9.123570170799e-01, 2.576968106505e-05, 2.5823e+02, 5.3685e+00, - 1DIAGNOSTIC, 40, -9.125483813192e-01, 2.501021275662e-05, 2.6361e+02, 5.3843e+00, - 1DIAGNOSTIC, 41, -9.127541329889e-01, 2.572741634803e-05, 2.6897e+02, 5.3536e+00, - 1DIAGNOSTIC, 42, -9.129657863572e-01, 2.651476400956e-05, 2.7432e+02, 5.3587e+00, - 1DIAGNOSTIC, 43, -9.131801374612e-01, 2.732005239242e-05, 2.7969e+02, 5.3687e+00, - 1DIAGNOSTIC, 44, -9.134019236078e-01, 2.808668826533e-05, 2.8504e+02, 5.3471e+00, - 1DIAGNOSTIC, 45, -9.136268230935e-01, 2.873136764982e-05, 2.9041e+02, 5.3707e+00, - 1DIAGNOSTIC, 46, -9.138365438132e-01, 2.908099855025e-05, 2.9578e+02, 5.3708e+00, - 1DIAGNOSTIC, 47, -9.140362118226e-01, 2.905875785647e-05, 3.0112e+02, 5.3331e+00, - 1DIAGNOSTIC, 48, -9.142275342351e-01, 2.863763514874e-05, 3.0648e+02, 5.3630e+00, - 1DIAGNOSTIC, 49, -9.144092221884e-01, 2.784025494720e-05, 3.1184e+02, 5.3612e+00, - 1DIAGNOSTIC, 50, -9.145888644318e-01, 2.676772261282e-05, 3.1721e+02, 5.3664e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.909958830321e-01, 1.797693134862e+308, 3.6116e+02, 4.3953e+01, - 1DIAGNOSTIC, 2, -8.917219447293e-01, 1.797693134862e+308, 4.0443e+02, 4.3266e+01, - 1DIAGNOSTIC, 3, -8.926981171480e-01, 1.797693134862e+308, 4.4750e+02, 4.3073e+01, - 1DIAGNOSTIC, 4, -8.936616729145e-01, 1.797693134862e+308, 4.9094e+02, 4.3446e+01, - 1DIAGNOSTIC, 5, -8.945825915470e-01, 1.797693134862e+308, 5.3423e+02, 4.3285e+01, - 1DIAGNOSTIC, 6, -8.954769511870e-01, 1.797693134862e+308, 5.7755e+02, 4.3317e+01, - 1DIAGNOSTIC, 7, -8.963619121237e-01, 1.797693134862e+308, 6.2074e+02, 4.3198e+01, - 1DIAGNOSTIC, 8, -8.972622432067e-01, 1.797693134862e+308, 6.6393e+02, 4.3185e+01, - 1DIAGNOSTIC, 9, -8.981835697076e-01, 1.797693134862e+308, 7.0729e+02, 4.3356e+01, - 1DIAGNOSTIC, 10, -8.991404044259e-01, 5.875460013630e-04, 7.5080e+02, 4.3518e+01, - 1DIAGNOSTIC, 11, -9.001437520165e-01, 5.401925935300e-04, 7.9390e+02, 4.3095e+01, - 1DIAGNOSTIC, 12, -9.011120759691e-01, 4.966977224574e-04, 8.3728e+02, 4.3377e+01, - 1DIAGNOSTIC, 13, -9.020769549927e-01, 4.620631954537e-04, 8.8055e+02, 4.3270e+01, - 1DIAGNOSTIC, 14, -9.027762136514e-01, 4.277673267790e-04, 9.2399e+02, 4.3446e+01, - 1DIAGNOSTIC, 15, -9.035724193477e-01, 3.951378128820e-04, 9.6758e+02, 4.3587e+01, - 1DIAGNOSTIC, 16, -9.042065921898e-01, 3.603781067885e-04, 1.0111e+03, 4.3477e+01, - 1DIAGNOSTIC, 17, -9.046952478938e-01, 3.219431017893e-04, 1.0547e+03, 4.3675e+01, - 1DIAGNOSTIC, 18, -9.051367836182e-01, 2.815712441198e-04, 1.0983e+03, 4.3547e+01, - 1DIAGNOSTIC, 19, -9.055408333558e-01, 2.413714213018e-04, 1.1417e+03, 4.3374e+01, - 1DIAGNOSTIC, 20, -9.059061579000e-01, 2.035588945263e-04, 1.1852e+03, 4.3512e+01, - Elapsed time (stage 2): 1186 - - -Total elapsed time: 1236 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:50:53 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:50:53 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:50:56 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:04 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1373 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:05 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:08 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1416 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:08 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/anat/sub-PNC007_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:11 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:11 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1471 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:11 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 1476 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:11 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:16 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:18 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:18 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:19 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:22 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:22 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:23 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:24 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/surf/sub-PNC007_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC007_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC007 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:27 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:36 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:47 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03/sub-PNC007_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC007 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:47 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC007 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:48 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC007_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC007 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:48 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 2179 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:50 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc/sub-PNC007_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/xfm/sub-PNC007_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 2218 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:52 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:52 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC007_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC007_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 68.383 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/logs/proc_func_18-03-2024-3172.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:51:58 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC007 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC007/ses-03/QC/sub-PNC007_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/14107_micapipe_proc-func_sub-PNC007_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC007* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 68.433 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC007_ses-03 -========================reprocessing without filter=================== -sub-PNC008_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC008 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC008 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC008 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC008 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:52:03 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:52:04 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-1_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:54:13 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:56:19 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 00:56:33 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.28 (mm) at sub-brick 185 -++ Max delta displ in automask = 1.04 (mm) at sub-brick 106 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:09:24 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:09:43 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-2_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:11:55 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:14:04 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-01/func/sub-PNC008_ses-01_task-rest_echo-3_bold.nii.gz is 39.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:16:13 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.198 -1.840 2.570 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.7 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.473 -2.841 3.930 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.9 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:20:55 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:21:22 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x561616583a50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [107.902, 59.9211, -103.711] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5616163fa730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x56161659a350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x56161658a600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.6093, 131.5, -121.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x56161658ce40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x561616d96f50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x561616d95270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [107.902, 59.9211, -103.711] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x561616589640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5616178c11c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x561616d94a00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.6093, 131.5, -121.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x561616590390) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5616180bb300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.296875363065e-01, 1.797693134862e+308, 4.0259e-02, 4.0258e-02, - 2DIAGNOSTIC, 2, -7.335096950296e-01, 1.797693134862e+308, 4.1338e-02, 1.0791e-03, - 2DIAGNOSTIC, 3, -7.380829937343e-01, 1.797693134862e+308, 4.2538e-02, 1.2002e-03, - 2DIAGNOSTIC, 4, -7.438877641360e-01, 1.797693134862e+308, 4.3766e-02, 1.2279e-03, - 2DIAGNOSTIC, 5, -7.509983792133e-01, 1.797693134862e+308, 4.5043e-02, 1.2770e-03, - 2DIAGNOSTIC, 6, -7.567042682242e-01, 1.797693134862e+308, 4.6533e-02, 1.4901e-03, - 2DIAGNOSTIC, 7, -7.587346426069e-01, 1.797693134862e+308, 4.7617e-02, 1.0841e-03, - 2DIAGNOSTIC, 8, -7.636691184323e-01, 1.797693134862e+308, 4.8945e-02, 1.3280e-03, - 2DIAGNOSTIC, 9, -7.690840671063e-01, 1.797693134862e+308, 5.1534e-02, 2.5890e-03, - 2DIAGNOSTIC, 10, -7.691209811611e-01, 3.647780990115e-03, 5.2984e-02, 1.4501e-03, - 2DIAGNOSTIC, 11, -7.695114381557e-01, 2.990105739838e-03, 5.4409e-02, 1.4241e-03, - 2DIAGNOSTIC, 12, -7.699867329400e-01, 2.313513279349e-03, 5.5737e-02, 1.3280e-03, - 2DIAGNOSTIC, 13, -7.704319993110e-01, 1.676702405779e-03, 5.7076e-02, 1.3399e-03, - 2DIAGNOSTIC, 14, -7.708242662628e-01, 1.141166708248e-03, 5.8439e-02, 1.3621e-03, - 2DIAGNOSTIC, 15, -7.710770689680e-01, 7.565746732220e-04, 5.9757e-02, 1.3180e-03, - 2DIAGNOSTIC, 16, -7.711766034416e-01, 4.897046546798e-04, 6.1445e-02, 1.6880e-03, - 2DIAGNOSTIC, 17, -7.712445168756e-01, 2.543048285083e-04, 6.3173e-02, 1.7281e-03, - 2DIAGNOSTIC, 18, -7.712935549228e-01, 1.224564826905e-04, 6.4464e-02, 1.2910e-03, - 2DIAGNOSTIC, 19, -7.714582872733e-01, 1.033137593535e-04, 6.5781e-02, 1.3170e-03, - 2DIAGNOSTIC, 20, -7.715548826743e-01, 7.903084359852e-05, 6.7350e-02, 1.5690e-03, - 2DIAGNOSTIC, 21, -7.715851999093e-01, 5.727651595519e-05, 6.9310e-02, 1.9600e-03, - 2DIAGNOSTIC, 22, -7.715911904640e-01, 4.043726982916e-05, 7.0676e-02, 1.3661e-03, - 2DIAGNOSTIC, 23, -7.716259422522e-01, 2.910914580397e-05, 7.2168e-02, 1.4920e-03, - 2DIAGNOSTIC, 24, -7.716306885795e-01, 2.216771121596e-05, 7.3470e-02, 1.3020e-03, - 2DIAGNOSTIC, 25, -7.716352184142e-01, 1.761809649114e-05, 7.4771e-02, 1.3011e-03, - 2DIAGNOSTIC, 26, -7.716426285854e-01, 1.343113390357e-05, 7.6299e-02, 1.5280e-03, - 2DIAGNOSTIC, 27, -7.716569198301e-01, 9.565974093857e-06, 7.7842e-02, 1.5430e-03, - 2DIAGNOSTIC, 28, -7.716681759397e-01, 5.938524404780e-06, 7.9201e-02, 1.3590e-03, - 2DIAGNOSTIC, 29, -7.716785257255e-01, 4.323222756869e-06, 8.0954e-02, 1.7531e-03, - 2DIAGNOSTIC, 30, -7.716830576908e-01, 3.762134415400e-06, 8.2302e-02, 1.3480e-03, - 2DIAGNOSTIC, 31, -7.716865678460e-01, 3.391985859115e-06, 8.4017e-02, 1.7149e-03, - 2DIAGNOSTIC, 32, -7.716903689510e-01, 2.923352375658e-06, 8.5532e-02, 1.5152e-03, - 2DIAGNOSTIC, 33, -7.716905645371e-01, 2.691883772249e-06, 8.6870e-02, 1.3380e-03, - 2DIAGNOSTIC, 34, -7.716923349853e-01, 2.382680588588e-06, 8.8177e-02, 1.3070e-03, - 2DIAGNOSTIC, 35, -7.716977758309e-01, 2.060588948503e-06, 8.9983e-02, 1.8060e-03, - 2DIAGNOSTIC, 36, -7.716983541366e-01, 1.726694239781e-06, 9.1687e-02, 1.7042e-03, - 2DIAGNOSTIC, 37, -7.716984687849e-01, 1.474632998030e-06, 9.3003e-02, 1.3151e-03, - 2DIAGNOSTIC, 38, -7.716989528127e-01, 1.291470281380e-06, 9.4532e-02, 1.5299e-03, - 2DIAGNOSTIC, 39, -7.716990408458e-01, 1.173564049006e-06, 9.7083e-02, 2.5508e-03, - 2DIAGNOSTIC, 40, -7.716990416278e-01, 1.068678389525e-06, 1.0222e-01, 5.1341e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.320740666403e-01, 1.797693134862e+308, 1.4449e-01, 4.2276e-02, - 2DIAGNOSTIC, 2, -4.318159085550e-01, 1.797693134862e+308, 1.4694e-01, 2.4509e-03, - 2DIAGNOSTIC, 3, -4.327832696457e-01, 1.797693134862e+308, 1.4936e-01, 2.4149e-03, - 2DIAGNOSTIC, 4, -4.345446591600e-01, 1.797693134862e+308, 1.5174e-01, 2.3801e-03, - 2DIAGNOSTIC, 5, -4.361893024929e-01, 1.797693134862e+308, 1.5392e-01, 2.1780e-03, - 2DIAGNOSTIC, 6, -4.384791385555e-01, 1.797693134862e+308, 1.5607e-01, 2.1560e-03, - 2DIAGNOSTIC, 7, -4.633184450065e-01, 1.797693134862e+308, 1.5828e-01, 2.2051e-03, - 2DIAGNOSTIC, 8, -5.227079879990e-01, 1.797693134862e+308, 1.6045e-01, 2.1710e-03, - 2DIAGNOSTIC, 9, -5.469123430306e-01, 1.797693134862e+308, 1.6437e-01, 3.9229e-03, - 2DIAGNOSTIC, 10, -5.484581709871e-01, 1.782264011221e-02, 1.6671e-01, 2.3389e-03, - 2DIAGNOSTIC, 11, -5.485212228994e-01, 1.852123185701e-02, 1.6903e-01, 2.3150e-03, - 2DIAGNOSTIC, 12, -5.529924551053e-01, 1.763033815026e-02, 1.7182e-01, 2.7969e-03, - 2DIAGNOSTIC, 13, -5.632852979737e-01, 1.574257648907e-02, 1.7464e-01, 2.8121e-03, - 2DIAGNOSTIC, 14, -5.654031974290e-01, 1.288345628518e-02, 1.7773e-01, 3.0968e-03, - 2DIAGNOSTIC, 15, -5.706586721930e-01, 9.593381399618e-03, 1.8003e-01, 2.3010e-03, - 2DIAGNOSTIC, 16, -5.735697928408e-01, 6.093497650167e-03, 1.8270e-01, 2.6639e-03, - 2DIAGNOSTIC, 17, -5.750780134260e-01, 3.319982511821e-03, 1.8540e-01, 2.6999e-03, - 2DIAGNOSTIC, 18, -5.837564527240e-01, 2.661499433601e-03, 1.8862e-01, 3.2210e-03, - 2DIAGNOSTIC, 19, -5.956813089600e-01, 2.873421673615e-03, 1.9175e-01, 3.1369e-03, - 2DIAGNOSTIC, 20, -6.086614737903e-01, 3.186094484972e-03, 1.9561e-01, 3.8552e-03, - 2DIAGNOSTIC, 21, -6.102004961181e-01, 3.207445323463e-03, 1.9851e-01, 2.9018e-03, - 2DIAGNOSTIC, 22, -6.114040511333e-01, 3.068909736180e-03, 2.0179e-01, 3.2759e-03, - 2DIAGNOSTIC, 23, -6.121686750562e-01, 2.916461897027e-03, 2.0460e-01, 2.8100e-03, - 2DIAGNOSTIC, 24, -6.121757889170e-01, 2.546019573427e-03, 2.0813e-01, 3.5372e-03, - 2DIAGNOSTIC, 25, -6.123197163512e-01, 2.081946256970e-03, 2.1062e-01, 2.4860e-03, - 2DIAGNOSTIC, 26, -6.131804126244e-01, 1.543215787067e-03, 2.1317e-01, 2.5451e-03, - 2DIAGNOSTIC, 27, -6.140298411680e-01, 9.514304920332e-04, 2.1565e-01, 2.4881e-03, - 2DIAGNOSTIC, 28, -6.143233236258e-01, 4.807318110334e-04, 2.1815e-01, 2.4951e-03, - 2DIAGNOSTIC, 29, -6.144880031324e-01, 2.110561403164e-04, 2.2037e-01, 2.2240e-03, - 2DIAGNOSTIC, 30, -6.147754445204e-01, 1.692529949775e-04, 2.2355e-01, 3.1729e-03, - 2DIAGNOSTIC, 31, -6.152056865849e-01, 1.464442729473e-04, 2.2674e-01, 3.1910e-03, - 2DIAGNOSTIC, 32, -6.165122851466e-01, 1.508864559281e-04, 2.3050e-01, 3.7661e-03, - 2DIAGNOSTIC, 33, -6.163474653188e-01, 1.498160320804e-04, 2.3318e-01, 2.6782e-03, - 2DIAGNOSTIC, 34, -6.171008375650e-01, 1.467314563979e-04, 2.3554e-01, 2.3570e-03, - 2DIAGNOSTIC, 35, -6.183449859439e-01, 1.498427115297e-04, 2.3935e-01, 3.8099e-03, - 2DIAGNOSTIC, 36, -6.187868925616e-01, 1.560724780318e-04, 2.4363e-01, 4.2858e-03, - 2DIAGNOSTIC, 37, -6.189165537180e-01, 1.604022169967e-04, 2.4717e-01, 3.5391e-03, - 2DIAGNOSTIC, 38, -6.189435031286e-01, 1.538708066518e-04, 2.5036e-01, 3.1850e-03, - 2DIAGNOSTIC, 39, -6.189928511699e-01, 1.360347310103e-04, 2.5359e-01, 3.2301e-03, - 2DIAGNOSTIC, 40, -6.191575912472e-01, 1.116666996922e-04, 2.5655e-01, 2.9640e-03, - 2DIAGNOSTIC, 41, -6.194614187477e-01, 8.644429601602e-05, 2.5893e-01, 2.3820e-03, - 2DIAGNOSTIC, 42, -6.199569313165e-01, 7.602098507821e-05, 2.6127e-01, 2.3379e-03, - 2DIAGNOSTIC, 43, -6.202794104483e-01, 6.067769305637e-05, 2.6358e-01, 2.3060e-03, - 2DIAGNOSTIC, 44, -6.219522833290e-01, 6.740505797104e-05, 2.6740e-01, 3.8190e-03, - 2DIAGNOSTIC, 45, -6.235171320128e-01, 9.778554019634e-05, 2.6959e-01, 2.1949e-03, - 2DIAGNOSTIC, 46, -6.238198939518e-01, 1.251472725570e-04, 2.7213e-01, 2.5370e-03, - 2DIAGNOSTIC, 47, -6.240570912507e-01, 1.435159027166e-04, 2.7466e-01, 2.5260e-03, - 2DIAGNOSTIC, 48, -6.241705232089e-01, 1.489910624118e-04, 2.7717e-01, 2.5120e-03, - 2DIAGNOSTIC, 49, -6.242462495700e-01, 1.410569034649e-04, 2.7940e-01, 2.2311e-03, - 2DIAGNOSTIC, 50, -6.254121915037e-01, 1.328089477855e-04, 2.8163e-01, 2.2340e-03, - 2DIAGNOSTIC, 51, -6.264762524365e-01, 1.251502826113e-04, 2.8394e-01, 2.3029e-03, - 2DIAGNOSTIC, 52, -6.274765630427e-01, 1.201009490960e-04, 2.8625e-01, 2.3131e-03, - 2DIAGNOSTIC, 53, -6.288230126386e-01, 1.189642176958e-04, 2.8859e-01, 2.3401e-03, - 2DIAGNOSTIC, 54, -6.310713515831e-01, 1.414574505096e-04, 2.9211e-01, 3.5212e-03, - 2DIAGNOSTIC, 55, -6.349686413743e-01, 1.973638301305e-04, 2.9465e-01, 2.5392e-03, - 2DIAGNOSTIC, 56, -6.361286174777e-01, 2.441138234960e-04, 2.9690e-01, 2.2521e-03, - 2DIAGNOSTIC, 57, -6.368258846100e-01, 2.740187409970e-04, 2.9943e-01, 2.5251e-03, - 2DIAGNOSTIC, 58, -6.378101970416e-01, 2.861566771156e-04, 3.0198e-01, 2.5589e-03, - 2DIAGNOSTIC, 59, -6.391911296644e-01, 2.818486459622e-04, 3.0456e-01, 2.5761e-03, - 2DIAGNOSTIC, 60, -6.412878958371e-01, 2.762018056745e-04, 3.0712e-01, 2.5640e-03, - 2DIAGNOSTIC, 61, -6.413136161399e-01, 2.525791288536e-04, 3.0969e-01, 2.5671e-03, - 2DIAGNOSTIC, 62, -6.425150072636e-01, 2.232796363092e-04, 3.1286e-01, 3.1691e-03, - 2DIAGNOSTIC, 63, -6.427390994689e-01, 1.853970471877e-04, 3.1510e-01, 2.2380e-03, - 2DIAGNOSTIC, 64, -6.432356666423e-01, 1.507784491136e-04, 3.1765e-01, 2.5539e-03, - 2DIAGNOSTIC, 65, -6.432992288430e-01, 1.317905889770e-04, 3.1993e-01, 2.2812e-03, - 2DIAGNOSTIC, 66, -6.435896008026e-01, 1.113927954505e-04, 3.2219e-01, 2.2540e-03, - 2DIAGNOSTIC, 67, -6.439349412496e-01, 8.844383545341e-05, 3.2443e-01, 2.2390e-03, - 2DIAGNOSTIC, 68, -6.444785641084e-01, 6.829123288159e-05, 3.2788e-01, 3.4561e-03, - 2DIAGNOSTIC, 69, -6.446693390614e-01, 5.272590901552e-05, 3.3011e-01, 2.2290e-03, - 2DIAGNOSTIC, 70, -6.447617390860e-01, 4.765691822801e-05, 3.3235e-01, 2.2409e-03, - 2DIAGNOSTIC, 71, -6.451900170825e-01, 4.109833405066e-05, 3.3526e-01, 2.9042e-03, - 2DIAGNOSTIC, 72, -6.452765680063e-01, 3.922288959212e-05, 3.3785e-01, 2.5959e-03, - 2DIAGNOSTIC, 73, -6.451515204540e-01, 3.421125452663e-05, 3.4040e-01, 2.5439e-03, - 2DIAGNOSTIC, 74, -6.450837924956e-01, 2.892889448077e-05, 3.4274e-01, 2.3401e-03, - 2DIAGNOSTIC, 75, -6.450451887401e-01, 2.122826651926e-05, 3.4534e-01, 2.6009e-03, - 2DIAGNOSTIC, 76, -6.452992345391e-01, 1.507351637212e-05, 3.4795e-01, 2.6159e-03, - 2DIAGNOSTIC, 77, -6.455669661117e-01, 1.130464425266e-05, 3.5028e-01, 2.3270e-03, - 2DIAGNOSTIC, 78, -6.465618247687e-01, 1.591172007034e-05, 3.5313e-01, 2.8479e-03, - 2DIAGNOSTIC, 79, -6.467402325374e-01, 2.101526845345e-05, 3.5534e-01, 2.2159e-03, - 2DIAGNOSTIC, 80, -6.468542174356e-01, 2.520032215067e-05, 3.5757e-01, 2.2240e-03, - 2DIAGNOSTIC, 81, -6.474213429762e-01, 3.270393098371e-05, 3.6019e-01, 2.6262e-03, - 2DIAGNOSTIC, 82, -6.483717906075e-01, 4.274033740864e-05, 3.6335e-01, 3.1600e-03, - 2DIAGNOSTIC, 83, -6.482906378952e-01, 4.708432228598e-05, 3.6564e-01, 2.2819e-03, - 2DIAGNOSTIC, 84, -6.483050508062e-01, 4.664831027305e-05, 3.6788e-01, 2.2449e-03, - 2DIAGNOSTIC, 85, -6.483412218959e-01, 4.186265767922e-05, 3.7043e-01, 2.5451e-03, - 2DIAGNOSTIC, 86, -6.485315257659e-01, 3.556925756391e-05, 3.7358e-01, 3.1562e-03, - 2DIAGNOSTIC, 87, -6.484564577321e-01, 2.681690075779e-05, 3.7615e-01, 2.5630e-03, - 2DIAGNOSTIC, 88, -6.484573393267e-01, 2.106977224924e-05, 3.7840e-01, 2.2540e-03, - 2DIAGNOSTIC, 89, -6.484601759668e-01, 1.452659099429e-05, 3.8065e-01, 2.2480e-03, - 2DIAGNOSTIC, 90, -6.484696564393e-01, 7.367500460776e-06, 3.8289e-01, 2.2380e-03, - 2DIAGNOSTIC, 91, -6.485133796586e-01, 2.677921816421e-06, 3.8516e-01, 2.2690e-03, - 2DIAGNOSTIC, 92, -6.485264570720e-01, 2.779732679061e-06, 3.8888e-01, 3.7241e-03, - 2DIAGNOSTIC, 93, -6.485266722484e-01, 2.258308888664e-06, 3.9115e-01, 2.2709e-03, - 2DIAGNOSTIC, 94, -6.485276621320e-01, 1.645996062352e-06, 3.9343e-01, 2.2750e-03, - 2DIAGNOSTIC, 95, -6.485308215582e-01, 1.084160462617e-06, 3.9566e-01, 2.2318e-03, - 2DIAGNOSTIC, 96, -6.485413095382e-01, 1.445146968159e-06, 3.9793e-01, 2.2700e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.885796314158e-01, 1.797693134862e+308, 4.6484e-01, 6.6917e-02, - 2DIAGNOSTIC, 2, -4.890124660015e-01, 1.797693134862e+308, 4.7728e-01, 1.2433e-02, - 2DIAGNOSTIC, 3, -4.896582983829e-01, 1.797693134862e+308, 4.8881e-01, 1.1537e-02, - 2DIAGNOSTIC, 4, -4.904034430703e-01, 1.797693134862e+308, 5.0041e-01, 1.1594e-02, - 2DIAGNOSTIC, 5, -4.910886189548e-01, 1.797693134862e+308, 5.1196e-01, 1.1551e-02, - 2DIAGNOSTIC, 6, -4.922966134704e-01, 1.797693134862e+308, 5.2549e-01, 1.3533e-02, - 2DIAGNOSTIC, 7, -4.929146377856e-01, 1.797693134862e+308, 5.3818e-01, 1.2688e-02, - 2DIAGNOSTIC, 8, -4.930707725079e-01, 1.797693134862e+308, 5.4953e-01, 1.1349e-02, - 2DIAGNOSTIC, 9, -4.931746775567e-01, 1.797693134862e+308, 5.6199e-01, 1.2458e-02, - 2DIAGNOSTIC, 10, -4.932629909850e-01, 7.023549259629e-04, 5.7275e-01, 1.0763e-02, - 2DIAGNOSTIC, 11, -4.933400932640e-01, 5.521957752302e-04, 5.8769e-01, 1.4945e-02, - 2DIAGNOSTIC, 12, -4.934715719970e-01, 4.044410406876e-04, 5.9857e-01, 1.0876e-02, - 2DIAGNOSTIC, 13, -4.935175285283e-01, 2.739691045420e-04, 6.0924e-01, 1.0666e-02, - 2DIAGNOSTIC, 14, -4.935542062379e-01, 1.699606444185e-04, 6.2426e-01, 1.5020e-02, - 2DIAGNOSTIC, 15, -4.934992459309e-01, 8.785583266842e-05, 6.3639e-01, 1.2135e-02, - 2DIAGNOSTIC, 16, -4.935111709806e-01, 5.172528795906e-05, 6.4828e-01, 1.1884e-02, - 2DIAGNOSTIC, 17, -4.935252716568e-01, 3.658318630882e-05, 6.6075e-01, 1.2474e-02, - 2DIAGNOSTIC, 18, -4.935419896495e-01, 2.536243055475e-05, 6.7450e-01, 1.3753e-02, - 2DIAGNOSTIC, 19, -4.935443784646e-01, 1.636433971319e-05, 6.8537e-01, 1.0868e-02, - 2DIAGNOSTIC, 20, -4.935351117592e-01, 9.220239155693e-06, 6.9603e-01, 1.0654e-02, - 2DIAGNOSTIC, 21, -4.935326326077e-01, 4.040658577197e-06, 7.0687e-01, 1.0847e-02, - 2DIAGNOSTIC, 22, -4.935885920189e-01, 3.958107757718e-06, 7.2187e-01, 1.4995e-02, - 2DIAGNOSTIC, 23, -4.936485473889e-01, 6.213424099906e-06, 7.3399e-01, 1.2124e-02, - 2DIAGNOSTIC, 24, -4.936938850566e-01, 9.818647376029e-06, 7.4752e-01, 1.3527e-02, - 2DIAGNOSTIC, 25, -4.936759342539e-01, 1.066895800544e-05, 7.5999e-01, 1.2475e-02, - 2DIAGNOSTIC, 26, -4.936771917578e-01, 1.090130333747e-05, 7.7377e-01, 1.3776e-02, - 2DIAGNOSTIC, 27, -4.936698661156e-01, 1.032262024424e-05, 7.8487e-01, 1.1099e-02, - 2DIAGNOSTIC, 28, -4.936698686430e-01, 9.232882894561e-06, 8.0786e-01, 2.2994e-02, - 2DIAGNOSTIC, 29, -4.936698686785e-01, 7.504651510566e-06, 8.2895e-01, 2.1090e-02, - 2DIAGNOSTIC, 30, -4.936698686789e-01, 5.141324567921e-06, 8.5492e-01, 2.5966e-02, - 2DIAGNOSTIC, 31, -4.936698686789e-01, 2.497214271528e-06, 8.6721e-01, 1.2296e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.131579191415e-01, 1.797693134862e+308, 1.0876e+00, 2.2037e-01, - Elapsed time (stage 0): 1.1139e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.300238239234e-01, 1.797693134862e+308, 4.2102e-02, 4.2101e-02, - 2DIAGNOSTIC, 2, -9.329893544130e-01, 1.797693134862e+308, 4.3330e-02, 1.2279e-03, - 2DIAGNOSTIC, 3, -9.375206700850e-01, 1.797693134862e+308, 4.4898e-02, 1.5681e-03, - 2DIAGNOSTIC, 4, -9.419435769177e-01, 1.797693134862e+308, 4.6460e-02, 1.5619e-03, - 2DIAGNOSTIC, 5, -9.488511304435e-01, 1.797693134862e+308, 4.7879e-02, 1.4188e-03, - 2DIAGNOSTIC, 6, -9.662503005169e-01, 1.797693134862e+308, 4.9441e-02, 1.5619e-03, - 2DIAGNOSTIC, 7, -9.773796106381e-01, 1.797693134862e+308, 5.1203e-02, 1.7622e-03, - 2DIAGNOSTIC, 8, -9.806731765817e-01, 1.797693134862e+308, 5.2487e-02, 1.2841e-03, - 2DIAGNOSTIC, 9, -9.814904332529e-01, 1.797693134862e+308, 5.3729e-02, 1.2419e-03, - 2DIAGNOSTIC, 10, -9.816327425708e-01, 4.266770156406e-03, 5.5193e-02, 1.4639e-03, - 2DIAGNOSTIC, 11, -9.837619900437e-01, 3.602321434661e-03, 5.6878e-02, 1.6849e-03, - 2DIAGNOSTIC, 12, -9.859382754663e-01, 2.848270210878e-03, 5.8962e-02, 2.0840e-03, - 2DIAGNOSTIC, 13, -9.874093042076e-01, 2.094643511802e-03, 6.0666e-02, 1.7040e-03, - 2DIAGNOSTIC, 14, -9.870727267188e-01, 1.351178039656e-03, 6.2341e-02, 1.6751e-03, - 2DIAGNOSTIC, 15, -9.868830477240e-01, 7.123668962902e-04, 6.3811e-02, 1.4701e-03, - 2DIAGNOSTIC, 16, -9.867241110366e-01, 4.008305031095e-04, 6.5288e-02, 1.4770e-03, - 2DIAGNOSTIC, 17, -9.875010622089e-01, 2.928554569248e-04, 6.6784e-02, 1.4961e-03, - 2DIAGNOSTIC, 18, -9.905776719673e-01, 2.730615865751e-04, 6.8500e-02, 1.7159e-03, - 2DIAGNOSTIC, 19, -9.924738400956e-01, 2.716582276481e-04, 6.9931e-02, 1.4312e-03, - 2DIAGNOSTIC, 20, -9.954750268498e-01, 2.910537490510e-04, 7.1634e-02, 1.7030e-03, - 2DIAGNOSTIC, 21, -9.990369209429e-01, 3.597582273856e-04, 7.3323e-02, 1.6892e-03, - 2DIAGNOSTIC, 22, -1.008302546059e+00, 5.385164067105e-04, 7.5712e-02, 2.3890e-03, - 2DIAGNOSTIC, 23, -1.009238350053e+00, 6.785544433555e-04, 7.7169e-02, 1.4570e-03, - 2DIAGNOSTIC, 24, -1.011034534868e+00, 7.620335840479e-04, 7.8863e-02, 1.6940e-03, - 2DIAGNOSTIC, 25, -1.010222543500e+00, 7.568997262424e-04, 8.0984e-02, 2.1212e-03, - 2DIAGNOSTIC, 26, -1.008112816043e+00, 6.559668158805e-04, 8.2437e-02, 1.4529e-03, - 2DIAGNOSTIC, 27, -1.009097190078e+00, 5.187847156125e-04, 8.3908e-02, 1.4710e-03, - 2DIAGNOSTIC, 28, -1.010053855088e+00, 3.836489403807e-04, 8.5377e-02, 1.4689e-03, - 2DIAGNOSTIC, 29, -1.011179439756e+00, 2.523467368425e-04, 8.8008e-02, 2.6309e-03, - 2DIAGNOSTIC, 30, -1.011284192870e+00, 1.365081340885e-04, 8.9484e-02, 1.4758e-03, - 2DIAGNOSTIC, 31, -1.011716026044e+00, 5.114136866201e-05, 9.0919e-02, 1.4350e-03, - 2DIAGNOSTIC, 32, -1.012168865631e+00, 5.377215298433e-05, 9.2394e-02, 1.4751e-03, - 2DIAGNOSTIC, 33, -1.011097012516e+00, 4.895764555748e-05, 9.3866e-02, 1.4720e-03, - 2DIAGNOSTIC, 34, -1.011398376743e+00, 5.791397606895e-05, 9.5572e-02, 1.7061e-03, - 2DIAGNOSTIC, 35, -1.007389324914e+00, 2.189428079052e-05, 9.7038e-02, 1.4658e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.686303983209e-01, 1.797693134862e+308, 1.4321e-01, 4.6175e-02, - 2DIAGNOSTIC, 2, -6.687656921880e-01, 1.797693134862e+308, 1.4585e-01, 2.6350e-03, - 2DIAGNOSTIC, 3, -6.709450327115e-01, 1.797693134862e+308, 1.4846e-01, 2.6081e-03, - 2DIAGNOSTIC, 4, -6.752083662348e-01, 1.797693134862e+308, 1.5106e-01, 2.6031e-03, - 2DIAGNOSTIC, 5, -6.812998757308e-01, 1.797693134862e+308, 1.5325e-01, 2.1942e-03, - 2DIAGNOSTIC, 6, -6.874564747040e-01, 1.797693134862e+308, 1.5573e-01, 2.4741e-03, - 2DIAGNOSTIC, 7, -6.900509511377e-01, 1.797693134862e+308, 1.5821e-01, 2.4829e-03, - 2DIAGNOSTIC, 8, -6.930650297935e-01, 1.797693134862e+308, 1.6166e-01, 3.4518e-03, - 2DIAGNOSTIC, 9, -6.932634131598e-01, 1.797693134862e+308, 1.6387e-01, 2.2120e-03, - 2DIAGNOSTIC, 10, -6.941353519171e-01, 2.935083100792e-03, 1.6633e-01, 2.4521e-03, - 2DIAGNOSTIC, 11, -6.958996556549e-01, 2.497381232765e-03, 1.6902e-01, 2.6951e-03, - 2DIAGNOSTIC, 12, -6.972944815730e-01, 1.962193954689e-03, 1.7173e-01, 2.7070e-03, - 2DIAGNOSTIC, 13, -6.973639556257e-01, 1.405311540144e-03, 1.7411e-01, 2.3830e-03, - 2DIAGNOSTIC, 14, -6.979853144248e-01, 9.454102681723e-04, 1.7713e-01, 3.0160e-03, - 2DIAGNOSTIC, 15, -6.987951209215e-01, 6.488851309411e-04, 1.7981e-01, 2.6851e-03, - 2DIAGNOSTIC, 16, -6.990197825080e-01, 4.932264088689e-04, 1.8253e-01, 2.7161e-03, - 2DIAGNOSTIC, 17, -6.991450922083e-01, 3.748857742871e-04, 1.8521e-01, 2.6860e-03, - 2DIAGNOSTIC, 18, -6.991990362816e-01, 3.065811164188e-04, 1.8790e-01, 2.6860e-03, - 2DIAGNOSTIC, 19, -6.993040943969e-01, 2.241115652603e-04, 1.9059e-01, 2.6901e-03, - 2DIAGNOSTIC, 20, -6.992143311149e-01, 1.444204292091e-04, 1.9359e-01, 2.9960e-03, - 2DIAGNOSTIC, 21, -6.993268714386e-01, 9.527027884686e-05, 1.9630e-01, 2.7089e-03, - 2DIAGNOSTIC, 22, -6.991545414959e-01, 6.498857494957e-05, 1.9896e-01, 2.6689e-03, - 2DIAGNOSTIC, 23, -6.992075724683e-01, 3.359374772502e-05, 2.0143e-01, 2.4688e-03, - 2DIAGNOSTIC, 24, -6.991262629893e-01, 1.069706059054e-05, 2.0469e-01, 3.2561e-03, - 2DIAGNOSTIC, 25, -6.992727438150e-01, 4.428112624778e-06, 2.0803e-01, 3.3381e-03, - 2DIAGNOSTIC, 26, -6.992685542595e-01, 1.729873107863e-06, 2.1067e-01, 2.6381e-03, - 2DIAGNOSTIC, 27, -6.993892890668e-01, 2.942816899366e-06, 2.1366e-01, 2.9979e-03, - 2DIAGNOSTIC, 28, -6.993023090196e-01, 3.370516768249e-06, 2.1637e-01, 2.7082e-03, - 2DIAGNOSTIC, 29, -6.992645759040e-01, 4.589895330274e-06, 2.1871e-01, 2.3360e-03, - 2DIAGNOSTIC, 30, -6.991715058585e-01, 2.836979901721e-06, 2.2103e-01, 2.3220e-03, - 2DIAGNOSTIC, 31, -6.992940283899e-01, 4.192708595703e-06, 2.2332e-01, 2.2938e-03, - 2DIAGNOSTIC, 32, -6.994129936582e-01, 4.390282970113e-06, 2.2562e-01, 2.2960e-03, - 2DIAGNOSTIC, 33, -6.997305892725e-01, 8.876323966810e-06, 2.2823e-01, 2.6140e-03, - 2DIAGNOSTIC, 34, -6.999461804664e-01, 1.388342859331e-05, 2.3055e-01, 2.3160e-03, - 2DIAGNOSTIC, 35, -7.014769432250e-01, 3.700084246331e-05, 2.3315e-01, 2.5959e-03, - 2DIAGNOSTIC, 36, -7.022730830963e-01, 6.389910448168e-05, 2.3643e-01, 3.2821e-03, - 2DIAGNOSTIC, 37, -7.022929999846e-01, 8.484426642328e-05, 2.3915e-01, 2.7189e-03, - 2DIAGNOSTIC, 38, -7.025635355500e-01, 9.896967685676e-05, 2.4144e-01, 2.2972e-03, - 2DIAGNOSTIC, 39, -7.036650517152e-01, 1.141717495680e-04, 2.4407e-01, 2.6221e-03, - 2DIAGNOSTIC, 40, -7.037803757671e-01, 1.174685941093e-04, 2.4644e-01, 2.3770e-03, - 2DIAGNOSTIC, 41, -7.037998773397e-01, 1.108787681077e-04, 2.4856e-01, 2.1200e-03, - 2DIAGNOSTIC, 42, -7.037350533771e-01, 9.494367531799e-05, 2.5105e-01, 2.4891e-03, - 2DIAGNOSTIC, 43, -7.037424111497e-01, 7.404313922978e-05, 2.5467e-01, 3.6199e-03, - 2DIAGNOSTIC, 44, -7.035857490516e-01, 4.713817208864e-05, 2.5706e-01, 2.3880e-03, - 2DIAGNOSTIC, 45, -7.033497512892e-01, 2.856047583282e-05, 2.5942e-01, 2.3642e-03, - 2DIAGNOSTIC, 46, -7.033640316397e-01, 1.554750309951e-05, 2.6175e-01, 2.3251e-03, - 2DIAGNOSTIC, 47, -7.033814701666e-01, 2.019234116527e-06, 2.6411e-01, 2.3649e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.410997791933e-01, 1.797693134862e+308, 3.3086e-01, 6.6745e-02, - 2DIAGNOSTIC, 2, -5.412901486320e-01, 1.797693134862e+308, 3.4561e-01, 1.4749e-02, - 2DIAGNOSTIC, 3, -5.416191754595e-01, 1.797693134862e+308, 3.5750e-01, 1.1897e-02, - 2DIAGNOSTIC, 4, -5.422765913846e-01, 1.797693134862e+308, 3.6958e-01, 1.2078e-02, - 2DIAGNOSTIC, 5, -5.429593891902e-01, 1.797693134862e+308, 3.8199e-01, 1.2412e-02, - 2DIAGNOSTIC, 6, -5.435540151293e-01, 1.797693134862e+308, 3.9693e-01, 1.4939e-02, - 2DIAGNOSTIC, 7, -5.440497938714e-01, 1.797693134862e+308, 4.1484e-01, 1.7903e-02, - 2DIAGNOSTIC, 8, -5.441336073000e-01, 1.797693134862e+308, 4.2661e-01, 1.1772e-02, - 2DIAGNOSTIC, 9, -5.443126175714e-01, 1.797693134862e+308, 4.3864e-01, 1.2035e-02, - 2DIAGNOSTIC, 10, -5.446307140529e-01, 4.670758878739e-04, 4.5108e-01, 1.2437e-02, - 2DIAGNOSTIC, 11, -5.449628581116e-01, 4.007098475930e-04, 4.6283e-01, 1.1750e-02, - 2DIAGNOSTIC, 12, -5.453743303386e-01, 3.358161781482e-04, 4.7447e-01, 1.1640e-02, - 2DIAGNOSTIC, 13, -5.460190492665e-01, 2.897086252882e-04, 4.8782e-01, 1.3352e-02, - 2DIAGNOSTIC, 14, -5.467713497157e-01, 2.761054726060e-04, 5.0532e-01, 1.7497e-02, - 2DIAGNOSTIC, 15, -5.469577899665e-01, 2.687681778317e-04, 5.1833e-01, 1.3013e-02, - 2DIAGNOSTIC, 16, -5.471051841821e-01, 2.619824218964e-04, 5.3222e-01, 1.3892e-02, - 2DIAGNOSTIC, 17, -5.471823017594e-01, 2.498060860270e-04, 5.4440e-01, 1.2175e-02, - 2DIAGNOSTIC, 18, -5.472955429402e-01, 2.215561788241e-04, 5.5813e-01, 1.3728e-02, - 2DIAGNOSTIC, 19, -5.473898382350e-01, 1.830492686788e-04, 5.7193e-01, 1.3803e-02, - 2DIAGNOSTIC, 20, -5.473955924999e-01, 1.399918680272e-04, 5.9116e-01, 1.9227e-02, - 2DIAGNOSTIC, 21, -5.474081066904e-01, 9.691204846918e-05, 6.0922e-01, 1.8057e-02, - 2DIAGNOSTIC, 22, -5.474076603908e-01, 5.842710189725e-05, 6.2318e-01, 1.3970e-02, - 2DIAGNOSTIC, 23, -5.473958479548e-01, 3.188310914902e-05, 6.3857e-01, 1.5389e-02, - 2DIAGNOSTIC, 24, -5.473921981542e-01, 2.087868323107e-05, 6.5164e-01, 1.3065e-02, - 2DIAGNOSTIC, 25, -5.473884064606e-01, 1.268865391773e-05, 6.6388e-01, 1.2246e-02, - 2DIAGNOSTIC, 26, -5.473801264763e-01, 6.852584546163e-06, 6.7685e-01, 1.2967e-02, - 2DIAGNOSTIC, 27, -5.473823925577e-01, 2.416172870993e-06, 6.9031e-01, 1.3456e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.590537303473e-01, 1.797693134862e+308, 8.8170e-01, 1.9139e-01, - Elapsed time (stage 1): 9.0733e-01 - - -Total elapsed time: 2.0227e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:21:26 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 48 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 67 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 88.89% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 88.89% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[16972 1627 1342 5155 2196 4847 1275 13256 1085 6127 1766 1528 - 4316 1093 1203 3369 1772 294 2081 826 796 337 575 548 - 845 376 439 567 170 343 209 158 0 225 131 0 - 0 0 216 205 0 0 0 0 0 0 0 0] -[102401 29914 35499 25734 41416 34540 32186 25350 22932 21072 - 13302 13588 27488 13046 19171 11846 8302 10292 8986 7036 - 10172 11460 7933 6388 3278 2972 7414 6873 5553 2937 - 2342 2765 1838 4762 2005 2043 707 2367 2232 1632 - 575 1682 886 1729 252 1505 1117 1006] -[ 0 0 143 157 277 1119 0 304 4088 370 242 2511 - 0 0 331 2532 7591 10413 475 0 258 1033 5148 8453 - 381 135 743 1434 1916 9232 1200 1181 0 455 442 979 - 0 725 0 152 0 1816 797 560 289 0 9432 873] -[ 2643 1568 1753 8682 6734 12996 3205 5626 2024 5591 3456 10812 - 660 1270 2562 3773 574 4069 4837 867 2171 14593 641 65979 - 7573 7008 10393 14714 21677 71049 7049 32138 1676 1952 4351 8222 - 1298 11745 5209 2765 13024 10431 6264 32579 2401 702 1096 42064] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:30:05 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:30:09 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:33:50 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:33:50 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:33:50 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:34:00 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:34:03 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC008 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:34:14 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:34:38 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:36:23 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:36:24 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:37:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:37:41 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55cb679a4d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [76.0585, 131.949, -121.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cb6781b730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5a3caf4010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55cb679a8020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.351, 60.3703, -104.161] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cb679ae0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5a39435010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55cb679be840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [76.0585, 131.949, -121.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cb679aa890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5a34761010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55cb679c23e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.351, 60.3703, -104.161] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55cb679b1130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f5a310a2010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.275769068483e-01, 1.797693134862e+308, 2.3922e-01, 2.3922e-01, - 2DIAGNOSTIC, 2, -4.291033955656e-01, 1.797693134862e+308, 2.4057e-01, 1.3540e-03, - 2DIAGNOSTIC, 3, -4.313089941005e-01, 1.797693134862e+308, 2.4196e-01, 1.3819e-03, - 2DIAGNOSTIC, 4, -4.339627420704e-01, 1.797693134862e+308, 2.4328e-01, 1.3289e-03, - 2DIAGNOSTIC, 5, -4.404017339302e-01, 1.797693134862e+308, 2.4461e-01, 1.3280e-03, - 2DIAGNOSTIC, 6, -4.523024131633e-01, 1.797693134862e+308, 2.4602e-01, 1.4060e-03, - 2DIAGNOSTIC, 7, -4.630279976498e-01, 1.797693134862e+308, 2.4736e-01, 1.3461e-03, - 2DIAGNOSTIC, 8, -5.007540293176e-01, 1.797693134862e+308, 2.4938e-01, 2.0161e-03, - 2DIAGNOSTIC, 9, -5.037977299264e-01, 1.797693134862e+308, 2.5102e-01, 1.6401e-03, - 2DIAGNOSTIC, 10, -5.048374059608e-01, 1.281697236522e-02, 2.5325e-01, 2.2249e-03, - 2DIAGNOSTIC, 11, -5.059163605305e-01, 1.228129034352e-02, 2.5519e-01, 1.9431e-03, - 2DIAGNOSTIC, 12, -5.078045717381e-01, 1.090626436119e-02, 2.5710e-01, 1.9090e-03, - 2DIAGNOSTIC, 13, -5.081313204364e-01, 8.875308447307e-03, 2.5876e-01, 1.6649e-03, - 2DIAGNOSTIC, 14, -5.080907445299e-01, 6.465923195901e-03, 2.6067e-01, 1.9028e-03, - 2DIAGNOSTIC, 15, -5.087383256598e-01, 4.111521912546e-03, 2.6212e-01, 1.4501e-03, - 2DIAGNOSTIC, 16, -5.098191818975e-01, 2.184426389740e-03, 2.6380e-01, 1.6880e-03, - 2DIAGNOSTIC, 17, -5.139815911933e-01, 7.795258369383e-04, 2.6549e-01, 1.6909e-03, - 2DIAGNOSTIC, 18, -5.148205328398e-01, 7.294310491815e-04, 2.6747e-01, 1.9779e-03, - 2DIAGNOSTIC, 19, -5.146238268667e-01, 7.076424263134e-04, 2.6917e-01, 1.7021e-03, - 2DIAGNOSTIC, 20, -5.156305129877e-01, 6.846459459646e-04, 2.7103e-01, 1.8549e-03, - 2DIAGNOSTIC, 21, -5.159041987226e-01, 6.352620719011e-04, 2.7251e-01, 1.4801e-03, - 2DIAGNOSTIC, 22, -5.172145971478e-01, 6.142992605430e-04, 2.7394e-01, 1.4310e-03, - 2DIAGNOSTIC, 23, -5.192198559547e-01, 5.964040934264e-04, 2.7557e-01, 1.6248e-03, - 2DIAGNOSTIC, 24, -5.197069847761e-01, 5.357480493413e-04, 2.7743e-01, 1.8649e-03, - 2DIAGNOSTIC, 25, -5.202297073909e-01, 4.583102577209e-04, 2.7975e-01, 2.3150e-03, - 2DIAGNOSTIC, 26, -5.199808800212e-01, 3.604841025623e-04, 2.8143e-01, 1.6890e-03, - 2DIAGNOSTIC, 27, -5.203497068797e-01, 3.327397266596e-04, 2.8285e-01, 1.4150e-03, - 2DIAGNOSTIC, 28, -5.212202367294e-01, 3.104591228072e-04, 2.8429e-01, 1.4429e-03, - 2DIAGNOSTIC, 29, -5.215303654341e-01, 2.619605127748e-04, 2.8585e-01, 1.5559e-03, - 2DIAGNOSTIC, 30, -5.220491616183e-01, 2.220839988807e-04, 2.8738e-01, 1.5340e-03, - 2DIAGNOSTIC, 31, -5.221936537232e-01, 1.717069838769e-04, 2.8916e-01, 1.7779e-03, - 2DIAGNOSTIC, 32, -5.225160579468e-01, 1.368107948960e-04, 2.9097e-01, 1.8120e-03, - 2DIAGNOSTIC, 33, -5.225852928325e-01, 1.266091137788e-04, 2.9267e-01, 1.6961e-03, - 2DIAGNOSTIC, 34, -5.219190951322e-01, 1.018311765556e-04, 2.9416e-01, 1.4961e-03, - 2DIAGNOSTIC, 35, -5.217123403202e-01, 7.474876008803e-05, 2.9583e-01, 1.6680e-03, - 2DIAGNOSTIC, 36, -5.214785114670e-01, 3.458908633549e-05, 2.9767e-01, 1.8370e-03, - 2DIAGNOSTIC, 37, -5.216600782641e-01, 1.528302098472e-06, 2.9910e-01, 1.4310e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.103116635897e-01, 1.797693134862e+308, 5.5428e-01, 2.5518e-01, - 2DIAGNOSTIC, 2, -4.093367696168e-01, 1.797693134862e+308, 5.5657e-01, 2.2879e-03, - 2DIAGNOSTIC, 3, -4.119497255987e-01, 1.797693134862e+308, 5.5902e-01, 2.4500e-03, - 2DIAGNOSTIC, 4, -4.192736369724e-01, 1.797693134862e+308, 5.6251e-01, 3.4869e-03, - 2DIAGNOSTIC, 5, -4.254022849114e-01, 1.797693134862e+308, 5.6513e-01, 2.6250e-03, - 2DIAGNOSTIC, 6, -4.313300279147e-01, 1.797693134862e+308, 5.6747e-01, 2.3398e-03, - 2DIAGNOSTIC, 7, -4.401601781016e-01, 1.797693134862e+308, 5.7107e-01, 3.6030e-03, - 2DIAGNOSTIC, 8, -4.412605886428e-01, 1.797693134862e+308, 5.7361e-01, 2.5351e-03, - 2DIAGNOSTIC, 9, -4.423104484589e-01, 1.797693134862e+308, 5.7680e-01, 3.1931e-03, - 2DIAGNOSTIC, 10, -4.423476722378e-01, 6.131511054822e-03, 5.7957e-01, 2.7719e-03, - 2DIAGNOSTIC, 11, -4.423539076570e-01, 5.101904982523e-03, 5.8202e-01, 2.4431e-03, - 2DIAGNOSTIC, 12, -4.423699177106e-01, 3.737600898427e-03, 5.8451e-01, 2.4948e-03, - 2DIAGNOSTIC, 13, -4.423109804472e-01, 2.377149226320e-03, 5.8733e-01, 2.8210e-03, - 2DIAGNOSTIC, 14, -4.422862707384e-01, 1.344798913181e-03, 5.8971e-01, 2.3789e-03, - 2DIAGNOSTIC, 15, -4.423568811103e-01, 6.003799638925e-04, 5.9217e-01, 2.4600e-03, - 2DIAGNOSTIC, 16, -4.423549539415e-01, 1.300678247124e-04, 5.9493e-01, 2.7552e-03, - 2DIAGNOSTIC, 17, -4.424705958592e-01, 4.872509362290e-05, 5.9843e-01, 3.5050e-03, - 2DIAGNOSTIC, 18, -4.431654875794e-01, 3.646442231980e-05, 6.0296e-01, 4.5259e-03, - 2DIAGNOSTIC, 19, -4.433102944655e-01, 6.278409287985e-05, 6.0565e-01, 2.6960e-03, - 2DIAGNOSTIC, 20, -4.433648804945e-01, 8.388338996284e-05, 6.0885e-01, 3.1931e-03, - 2DIAGNOSTIC, 21, -4.432492131832e-01, 9.216790594107e-05, 6.1185e-01, 3.0069e-03, - 2DIAGNOSTIC, 22, -4.431518657880e-01, 8.894895330890e-05, 6.1457e-01, 2.7168e-03, - 2DIAGNOSTIC, 23, -4.431693530782e-01, 7.640918109151e-05, 6.1691e-01, 2.3391e-03, - 2DIAGNOSTIC, 24, -4.433095066331e-01, 6.079287178657e-05, 6.1927e-01, 2.3570e-03, - 2DIAGNOSTIC, 25, -4.448104718457e-01, 8.193615330763e-05, 6.2251e-01, 3.2439e-03, - 2DIAGNOSTIC, 26, -4.452934163130e-01, 1.050856960227e-04, 6.2482e-01, 2.3072e-03, - 2DIAGNOSTIC, 27, -4.456060156103e-01, 1.268084203705e-04, 6.2842e-01, 3.5980e-03, - 2DIAGNOSTIC, 28, -4.458316144442e-01, 1.568168169775e-04, 6.3068e-01, 2.2640e-03, - 2DIAGNOSTIC, 29, -4.460401992404e-01, 1.777653988033e-04, 6.3319e-01, 2.5060e-03, - 2DIAGNOSTIC, 30, -4.470305699406e-01, 2.026686561282e-04, 6.3546e-01, 2.2781e-03, - 2DIAGNOSTIC, 31, -4.500871475770e-01, 2.676194103712e-04, 6.3870e-01, 3.2401e-03, - 2DIAGNOSTIC, 32, -4.545024590314e-01, 3.893033602511e-04, 6.4129e-01, 2.5818e-03, - 2DIAGNOSTIC, 33, -4.553756629832e-01, 4.828737780399e-04, 6.4427e-01, 2.9860e-03, - 2DIAGNOSTIC, 34, -4.554612346186e-01, 5.300504328692e-04, 6.4656e-01, 2.2910e-03, - 2DIAGNOSTIC, 35, -4.555544988732e-01, 5.544220806953e-04, 6.4910e-01, 2.5389e-03, - 2DIAGNOSTIC, 36, -4.557586204160e-01, 5.359909132987e-04, 6.5134e-01, 2.2340e-03, - 2DIAGNOSTIC, 37, -4.558661222679e-01, 4.736201394291e-04, 6.5392e-01, 2.5799e-03, - 2DIAGNOSTIC, 38, -4.565345202817e-01, 3.851976018322e-04, 6.5794e-01, 4.0231e-03, - 2DIAGNOSTIC, 39, -4.567648710167e-01, 2.730936483950e-04, 6.6073e-01, 2.7890e-03, - 2DIAGNOSTIC, 40, -4.569229923561e-01, 1.589568986333e-04, 6.6353e-01, 2.8069e-03, - 2DIAGNOSTIC, 41, -4.571004755649e-01, 8.438854758920e-05, 6.6640e-01, 2.8691e-03, - 2DIAGNOSTIC, 42, -4.570587056621e-01, 7.187091630606e-05, 6.6862e-01, 2.2171e-03, - 2DIAGNOSTIC, 43, -4.570227246143e-01, 6.557386858401e-05, 6.7082e-01, 2.2039e-03, - 2DIAGNOSTIC, 44, -4.569822381887e-01, 5.400702572398e-05, 6.7311e-01, 2.2810e-03, - 2DIAGNOSTIC, 45, -4.570201040586e-01, 3.977415682015e-05, 6.7538e-01, 2.2750e-03, - 2DIAGNOSTIC, 46, -4.570640541507e-01, 2.593627449502e-05, 6.7770e-01, 2.3220e-03, - 2DIAGNOSTIC, 47, -4.571375165473e-01, 1.254565698569e-05, 6.8036e-01, 2.6538e-03, - 2DIAGNOSTIC, 48, -4.571994536202e-01, 8.288472527887e-06, 6.8263e-01, 2.2769e-03, - 2DIAGNOSTIC, 49, -4.572629018644e-01, 7.275473020103e-06, 6.8526e-01, 2.6281e-03, - 2DIAGNOSTIC, 50, -4.575138934154e-01, 1.080586402434e-05, 6.8790e-01, 2.6360e-03, - 2DIAGNOSTIC, 51, -4.605760050004e-01, 5.363988069038e-05, 6.9119e-01, 3.2959e-03, - 2DIAGNOSTIC, 52, -4.613522767005e-01, 9.765949747676e-05, 6.9442e-01, 3.2289e-03, - 2DIAGNOSTIC, 53, -4.614061589761e-01, 1.311058534484e-04, 6.9732e-01, 2.8932e-03, - 2DIAGNOSTIC, 54, -4.616924821241e-01, 1.543094777892e-04, 6.9960e-01, 2.2869e-03, - 2DIAGNOSTIC, 55, -4.617152913486e-01, 1.624722661426e-04, 7.0237e-01, 2.7719e-03, - 2DIAGNOSTIC, 56, -4.616897248550e-01, 1.544089749543e-04, 7.0465e-01, 2.2800e-03, - 2DIAGNOSTIC, 57, -4.618242071144e-01, 1.340016439024e-04, 7.0733e-01, 2.6710e-03, - 2DIAGNOSTIC, 58, -4.622720125604e-01, 1.075439867727e-04, 7.0960e-01, 2.2719e-03, - 2DIAGNOSTIC, 59, -4.625331335263e-01, 7.549676821208e-05, 7.1211e-01, 2.5160e-03, - 2DIAGNOSTIC, 60, -4.627751158681e-01, 4.172470164960e-05, 7.1458e-01, 2.4650e-03, - 2DIAGNOSTIC, 61, -4.628226093551e-01, 3.730561830471e-05, 7.1674e-01, 2.1641e-03, - 2DIAGNOSTIC, 62, -4.629801687730e-01, 3.908167728370e-05, 7.1922e-01, 2.4810e-03, - 2DIAGNOSTIC, 63, -4.636188205594e-01, 4.387460888367e-05, 7.2154e-01, 2.3201e-03, - 2DIAGNOSTIC, 64, -4.658109338558e-01, 6.863041151911e-05, 7.2392e-01, 2.3770e-03, - 2DIAGNOSTIC, 65, -4.778207938731e-01, 2.025590036835e-04, 7.2653e-01, 2.6140e-03, - 2DIAGNOSTIC, 66, -4.834921300842e-01, 3.637861456905e-04, 7.2946e-01, 2.9290e-03, - 2DIAGNOSTIC, 67, -4.838082956284e-01, 4.891892443402e-04, 7.3214e-01, 2.6810e-03, - 2DIAGNOSTIC, 68, -4.875986691531e-01, 6.049285334848e-04, 7.3562e-01, 3.4771e-03, - 2DIAGNOSTIC, 69, -4.890633545492e-01, 6.736381748477e-04, 7.3804e-01, 2.4199e-03, - 2DIAGNOSTIC, 70, -4.902174086913e-01, 6.860011264425e-04, 7.4086e-01, 2.8141e-03, - 2DIAGNOSTIC, 71, -4.913575452028e-01, 6.419320091862e-04, 7.4367e-01, 2.8169e-03, - 2DIAGNOSTIC, 72, -4.921829668572e-01, 5.474010790816e-04, 7.4884e-01, 5.1680e-03, - 2DIAGNOSTIC, 73, -4.924980393823e-01, 4.121202849125e-04, 7.5113e-01, 2.2891e-03, - 2DIAGNOSTIC, 74, -4.925860872459e-01, 2.579076069179e-04, 7.5366e-01, 2.5320e-03, - 2DIAGNOSTIC, 75, -4.926778603806e-01, 1.832092247508e-04, 7.5588e-01, 2.2149e-03, - 2DIAGNOSTIC, 76, -4.928044170192e-01, 1.409330470249e-04, 7.5819e-01, 2.3129e-03, - 2DIAGNOSTIC, 77, -4.927888441037e-01, 8.797888044384e-05, 7.6053e-01, 2.3382e-03, - 2DIAGNOSTIC, 78, -4.928706026950e-01, 5.884526098386e-05, 7.6256e-01, 2.0339e-03, - 2DIAGNOSTIC, 79, -4.927702703215e-01, 3.554342326428e-05, 7.6497e-01, 2.4059e-03, - 2DIAGNOSTIC, 80, -4.927499799653e-01, 1.816264174196e-05, 7.6704e-01, 2.0700e-03, - 2DIAGNOSTIC, 81, -4.926373740956e-01, 7.254720529124e-06, 7.6929e-01, 2.2571e-03, - 2DIAGNOSTIC, 82, -4.927136931166e-01, 2.752526089590e-06, 7.7185e-01, 2.5570e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.653809184313e-01, 1.797693134862e+308, 1.0481e+00, 2.7628e-01, - 2DIAGNOSTIC, 2, -3.664192953723e-01, 1.797693134862e+308, 1.0610e+00, 1.2843e-02, - 2DIAGNOSTIC, 3, -3.679917376192e-01, 1.797693134862e+308, 1.0739e+00, 1.2915e-02, - 2DIAGNOSTIC, 4, -3.702867306292e-01, 1.797693134862e+308, 1.0865e+00, 1.2620e-02, - 2DIAGNOSTIC, 5, -3.722285869822e-01, 1.797693134862e+308, 1.0989e+00, 1.2422e-02, - 2DIAGNOSTIC, 6, -3.740967437741e-01, 1.797693134862e+308, 1.1117e+00, 1.2790e-02, - 2DIAGNOSTIC, 7, -3.752887978989e-01, 1.797693134862e+308, 1.1305e+00, 1.8762e-02, - 2DIAGNOSTIC, 8, -3.762710968855e-01, 1.797693134862e+308, 1.1431e+00, 1.2620e-02, - 2DIAGNOSTIC, 9, -3.767868009540e-01, 1.797693134862e+308, 1.1577e+00, 1.4542e-02, - 2DIAGNOSTIC, 10, -3.781916913321e-01, 2.318188981746e-03, 1.1703e+00, 1.2642e-02, - 2DIAGNOSTIC, 11, -3.808214466074e-01, 2.077850236097e-03, 1.1829e+00, 1.2648e-02, - 2DIAGNOSTIC, 12, -3.878963137858e-01, 2.199082503983e-03, 1.1954e+00, 1.2416e-02, - 2DIAGNOSTIC, 13, -3.938790164597e-01, 2.529574341830e-03, 1.2098e+00, 1.4485e-02, - 2DIAGNOSTIC, 14, -3.953417583221e-01, 2.779522717705e-03, 1.2264e+00, 1.6578e-02, - 2DIAGNOSTIC, 15, -4.016792753771e-01, 3.157283964713e-03, 1.2393e+00, 1.2831e-02, - 2DIAGNOSTIC, 16, -4.040149417437e-01, 3.384691974777e-03, 1.2521e+00, 1.2866e-02, - 2DIAGNOSTIC, 17, -4.058143021766e-01, 3.398416685924e-03, 1.2693e+00, 1.7186e-02, - 2DIAGNOSTIC, 18, -4.099232726501e-01, 3.305305199626e-03, 1.2823e+00, 1.2995e-02, - 2DIAGNOSTIC, 19, -4.122677300045e-01, 3.026960553342e-03, 1.2976e+00, 1.5257e-02, - 2DIAGNOSTIC, 20, -4.180964141255e-01, 2.762100555762e-03, 1.3144e+00, 1.6840e-02, - 2DIAGNOSTIC, 21, -4.294463075031e-01, 2.743214140319e-03, 1.3279e+00, 1.3517e-02, - 2DIAGNOSTIC, 22, -4.585394213576e-01, 3.644880796261e-03, 1.3424e+00, 1.4454e-02, - 2DIAGNOSTIC, 23, -5.192248729044e-01, 6.143723766433e-03, 1.3625e+00, 2.0160e-02, - 2DIAGNOSTIC, 24, -5.223878867398e-01, 7.897711915719e-03, 1.3748e+00, 1.2246e-02, - 2DIAGNOSTIC, 25, -5.281854699427e-01, 9.100008269783e-03, 1.3894e+00, 1.4662e-02, - 2DIAGNOSTIC, 26, -5.293660443044e-01, 9.445135165518e-03, 1.4036e+00, 1.4120e-02, - 2DIAGNOSTIC, 27, -5.300106430664e-01, 8.921858316820e-03, 1.4181e+00, 1.4534e-02, - 2DIAGNOSTIC, 28, -5.303403682658e-01, 7.698355743546e-03, 1.4369e+00, 1.8838e-02, - 2DIAGNOSTIC, 29, -5.303950697109e-01, 5.918847619960e-03, 1.4490e+00, 1.2103e-02, - 2DIAGNOSTIC, 30, -5.305428456575e-01, 3.883893845584e-03, 1.4613e+00, 1.2238e-02, - 2DIAGNOSTIC, 31, -5.305923830810e-01, 1.886012649291e-03, 1.4752e+00, 1.3893e-02, - 2DIAGNOSTIC, 32, -5.306680737198e-01, 4.264379273818e-04, 1.4891e+00, 1.3976e-02, - 2DIAGNOSTIC, 33, -5.307885885259e-01, 2.313219642182e-04, 1.5033e+00, 1.4145e-02, - 2DIAGNOSTIC, 34, -5.308839063308e-01, 8.744649619528e-05, 1.5151e+00, 1.1862e-02, - 2DIAGNOSTIC, 35, -5.309886728614e-01, 5.310383788596e-05, 1.5276e+00, 1.2438e-02, - 2DIAGNOSTIC, 36, -5.315323797874e-01, 4.642548706726e-05, 1.5435e+00, 1.5968e-02, - 2DIAGNOSTIC, 37, -5.316496165461e-01, 4.859533968903e-05, 1.5658e+00, 2.2207e-02, - 2DIAGNOSTIC, 38, -5.316456412582e-01, 5.159281065505e-05, 1.5795e+00, 1.3747e-02, - 2DIAGNOSTIC, 39, -5.316411291306e-01, 5.050757949576e-05, 1.5914e+00, 1.1921e-02, - 2DIAGNOSTIC, 40, -5.316068014426e-01, 4.654625345376e-05, 1.6051e+00, 1.3715e-02, - 2DIAGNOSTIC, 41, -5.315821498950e-01, 3.872774712507e-05, 1.6168e+00, 1.1626e-02, - 2DIAGNOSTIC, 42, -5.315908294146e-01, 2.892745475180e-05, 1.6289e+00, 1.2101e-02, - 2DIAGNOSTIC, 43, -5.316049529787e-01, 1.900829405307e-05, 1.6411e+00, 1.2224e-02, - 2DIAGNOSTIC, 44, -5.316730244651e-01, 1.023978168186e-05, 1.6532e+00, 1.2067e-02, - 2DIAGNOSTIC, 45, -5.317251207234e-01, 2.957472137487e-06, 1.6651e+00, 1.1900e-02, - 2DIAGNOSTIC, 46, -5.318306259165e-01, 4.433054074559e-06, 1.6772e+00, 1.2141e-02, - 2DIAGNOSTIC, 47, -5.321537429758e-01, 1.118587738570e-05, 1.6898e+00, 1.2608e-02, - 2DIAGNOSTIC, 48, -5.322749550317e-01, 1.800478484622e-05, 1.7177e+00, 2.7859e-02, - 2DIAGNOSTIC, 49, -5.323654370349e-01, 2.394364637167e-05, 1.7322e+00, 1.4534e-02, - 2DIAGNOSTIC, 50, -5.323421277793e-01, 2.674106181733e-05, 1.7471e+00, 1.4927e-02, - 2DIAGNOSTIC, 51, -5.323682390801e-01, 2.696156200309e-05, 1.7592e+00, 1.2104e-02, - 2DIAGNOSTIC, 52, -5.323483247078e-01, 2.447670260629e-05, 1.7714e+00, 1.2136e-02, - 2DIAGNOSTIC, 53, -5.323564529405e-01, 2.004174945308e-05, 1.7837e+00, 1.2334e-02, - 2DIAGNOSTIC, 54, -5.323975082278e-01, 1.518221028864e-05, 1.7960e+00, 1.2286e-02, - 2DIAGNOSTIC, 55, -5.324353524261e-01, 1.012256409755e-05, 1.8082e+00, 1.2170e-02, - 2DIAGNOSTIC, 56, -5.324974264622e-01, 6.067443977711e-06, 1.8221e+00, 1.3994e-02, - 2DIAGNOSTIC, 57, -5.325444650245e-01, 5.484429881714e-06, 1.8364e+00, 1.4257e-02, - 2DIAGNOSTIC, 58, -5.326189698559e-01, 6.436023387402e-06, 1.8562e+00, 1.9763e-02, - 2DIAGNOSTIC, 59, -5.326063550053e-01, 7.568060807296e-06, 1.8700e+00, 1.3803e-02, - 2DIAGNOSTIC, 60, -5.325926005336e-01, 7.624798881764e-06, 1.8819e+00, 1.1944e-02, - 2DIAGNOSTIC, 61, -5.325795844381e-01, 7.144442783415e-06, 1.8961e+00, 1.4182e-02, - 2DIAGNOSTIC, 62, -5.325815470976e-01, 5.875420428972e-06, 1.9079e+00, 1.1765e-02, - 2DIAGNOSTIC, 63, -5.325696507015e-01, 4.091206107417e-06, 1.9197e+00, 1.1827e-02, - 2DIAGNOSTIC, 64, -5.325750314539e-01, 2.460662447034e-06, 1.9315e+00, 1.1851e-02, - 2DIAGNOSTIC, 65, -5.325843464613e-01, 1.128008592033e-06, 1.9453e+00, 1.3766e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.524264643494e-01, 1.797693134862e+308, 2.3676e+00, 4.2225e-01, - 2DIAGNOSTIC, 2, -4.526163078599e-01, 1.797693134862e+308, 2.4516e+00, 8.4038e-02, - 2DIAGNOSTIC, 3, -4.527133916675e-01, 1.797693134862e+308, 2.5412e+00, 8.9584e-02, - 2DIAGNOSTIC, 4, -4.527726546901e-01, 1.797693134862e+308, 2.6242e+00, 8.2973e-02, - 2DIAGNOSTIC, 5, -4.529265985372e-01, 1.797693134862e+308, 2.7152e+00, 9.1094e-02, - 2DIAGNOSTIC, 6, -4.531448914052e-01, 1.797693134862e+308, 2.8292e+00, 1.1394e-01, - 2DIAGNOSTIC, 7, -4.532035634527e-01, 1.797693134862e+308, 2.9412e+00, 1.1206e-01, - 2DIAGNOSTIC, 8, -4.532162209316e-01, 1.797693134862e+308, 3.0754e+00, 1.3420e-01, - 2DIAGNOSTIC, 9, -4.532170351501e-01, 1.797693134862e+308, 3.1502e+00, 7.4772e-02, - 2DIAGNOSTIC, 10, -4.532148202033e-01, 1.226162203172e-04, 3.2385e+00, 8.8281e-02, - 2DIAGNOSTIC, 11, -4.532109685298e-01, 8.786032935441e-05, 3.3350e+00, 9.6512e-02, - 2DIAGNOSTIC, 12, -4.532069571332e-01, 6.092890354827e-05, 3.4308e+00, 9.5772e-02, - 2DIAGNOSTIC, 13, -4.532045913379e-01, 3.761195969380e-05, 3.5141e+00, 8.3359e-02, - 2DIAGNOSTIC, 14, -4.532038710156e-01, 1.701566692565e-05, 3.6139e+00, 9.9789e-02, - 2DIAGNOSTIC, 15, -4.532044724043e-01, 4.059677808241e-06, 3.7153e+00, 1.0134e-01, - Elapsed time (stage 0): 3.8540e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.321676354367e-01, 1.797693134862e+308, 2.0613e-01, 2.0613e-01, - 2DIAGNOSTIC, 2, -7.344255482907e-01, 1.797693134862e+308, 2.0753e-01, 1.4000e-03, - 2DIAGNOSTIC, 3, -7.380299988560e-01, 1.797693134862e+308, 2.0911e-01, 1.5769e-03, - 2DIAGNOSTIC, 4, -7.417994948547e-01, 1.797693134862e+308, 2.1042e-01, 1.3142e-03, - 2DIAGNOSTIC, 5, -7.459307961729e-01, 1.797693134862e+308, 2.1176e-01, 1.3399e-03, - 2DIAGNOSTIC, 6, -7.538441066887e-01, 1.797693134862e+308, 2.1307e-01, 1.3111e-03, - 2DIAGNOSTIC, 7, -7.715506031202e-01, 1.797693134862e+308, 2.1440e-01, 1.3280e-03, - 2DIAGNOSTIC, 8, -7.978605503291e-01, 1.797693134862e+308, 2.1606e-01, 1.6570e-03, - 2DIAGNOSTIC, 9, -8.225694496136e-01, 1.797693134862e+308, 2.1804e-01, 1.9760e-03, - 2DIAGNOSTIC, 10, -8.287059364383e-01, 8.556861083719e-03, 2.1976e-01, 1.7281e-03, - 2DIAGNOSTIC, 11, -8.310210241532e-01, 8.688174126750e-03, 2.2200e-01, 2.2361e-03, - 2DIAGNOSTIC, 12, -8.315765983289e-01, 8.107233380833e-03, 2.2420e-01, 2.1980e-03, - 2DIAGNOSTIC, 13, -8.318061369667e-01, 6.988839427900e-03, 2.2603e-01, 1.8320e-03, - 2DIAGNOSTIC, 14, -8.317639595689e-01, 5.498347707972e-03, 2.2788e-01, 1.8451e-03, - 2DIAGNOSTIC, 15, -8.316039103356e-01, 3.818642470042e-03, 2.2958e-01, 1.7040e-03, - 2DIAGNOSTIC, 16, -8.316910224625e-01, 2.194047181193e-03, 2.3121e-01, 1.6341e-03, - 2DIAGNOSTIC, 17, -8.320507055615e-01, 9.412482467647e-04, 2.3289e-01, 1.6780e-03, - 2DIAGNOSTIC, 18, -8.343223134435e-01, 3.024886283291e-04, 2.3502e-01, 2.1281e-03, - 2DIAGNOSTIC, 19, -8.357969822187e-01, 1.935029409795e-04, 2.3666e-01, 1.6398e-03, - 2DIAGNOSTIC, 20, -8.347116497962e-01, 1.667914847491e-04, 2.3846e-01, 1.8041e-03, - 2DIAGNOSTIC, 21, -8.353062686610e-01, 1.776926070857e-04, 2.4007e-01, 1.6060e-03, - 2DIAGNOSTIC, 22, -8.355135599379e-01, 1.829289915528e-04, 2.4165e-01, 1.5781e-03, - 2DIAGNOSTIC, 23, -8.365623153913e-01, 1.894381507396e-04, 2.4323e-01, 1.5781e-03, - 2DIAGNOSTIC, 24, -8.369398644935e-01, 1.821922028220e-04, 2.4482e-01, 1.5981e-03, - 2DIAGNOSTIC, 25, -8.334093945326e-01, 1.073943507390e-04, 2.4707e-01, 2.2509e-03, - 2DIAGNOSTIC, 26, -8.348196401864e-01, 5.094878616367e-05, 2.4865e-01, 1.5750e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.350520048909e-01, 1.797693134862e+308, 4.5660e-01, 2.0795e-01, - 2DIAGNOSTIC, 2, -7.346302572648e-01, 1.797693134862e+308, 4.5886e-01, 2.2581e-03, - 2DIAGNOSTIC, 3, -7.357604481773e-01, 1.797693134862e+308, 4.6163e-01, 2.7699e-03, - 2DIAGNOSTIC, 4, -7.369865172690e-01, 1.797693134862e+308, 4.6406e-01, 2.4362e-03, - 2DIAGNOSTIC, 5, -7.374359181527e-01, 1.797693134862e+308, 4.6639e-01, 2.3320e-03, - 2DIAGNOSTIC, 6, -7.374503711977e-01, 1.797693134862e+308, 4.6876e-01, 2.3601e-03, - 2DIAGNOSTIC, 7, -7.376601355175e-01, 1.797693134862e+308, 4.7113e-01, 2.3780e-03, - 2DIAGNOSTIC, 8, -7.383951792962e-01, 1.797693134862e+308, 4.7482e-01, 3.6840e-03, - 2DIAGNOSTIC, 9, -7.383753956814e-01, 1.797693134862e+308, 4.7706e-01, 2.2461e-03, - 2DIAGNOSTIC, 10, -7.382861337314e-01, 3.376284811635e-04, 4.7923e-01, 2.1670e-03, - 2DIAGNOSTIC, 11, -7.381957002226e-01, 2.563013085270e-04, 4.8174e-01, 2.5139e-03, - 2DIAGNOSTIC, 12, -7.379058825125e-01, 1.424758031862e-04, 4.8413e-01, 2.3901e-03, - 2DIAGNOSTIC, 13, -7.377781237598e-01, 6.218835394267e-05, 4.8625e-01, 2.1110e-03, - 2DIAGNOSTIC, 14, -7.376773134035e-01, 1.858778313547e-05, 4.8837e-01, 2.1260e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.062625913427e-01, 1.797693134862e+308, 7.3902e-01, 2.5064e-01, - 2DIAGNOSTIC, 2, -6.075082249803e-01, 1.797693134862e+308, 7.5144e-01, 1.2422e-02, - 2DIAGNOSTIC, 3, -6.092882580140e-01, 1.797693134862e+308, 7.6401e-01, 1.2568e-02, - 2DIAGNOSTIC, 4, -6.112324547460e-01, 1.797693134862e+308, 7.7660e-01, 1.2596e-02, - 2DIAGNOSTIC, 5, -6.136046713852e-01, 1.797693134862e+308, 7.8925e-01, 1.2647e-02, - 2DIAGNOSTIC, 6, -6.147866049231e-01, 1.797693134862e+308, 8.0239e-01, 1.3145e-02, - 2DIAGNOSTIC, 7, -6.175290805325e-01, 1.797693134862e+308, 8.2231e-01, 1.9921e-02, - 2DIAGNOSTIC, 8, -6.182895845670e-01, 1.797693134862e+308, 8.3572e-01, 1.3405e-02, - 2DIAGNOSTIC, 9, -6.205308722368e-01, 1.797693134862e+308, 8.5064e-01, 1.4920e-02, - 2DIAGNOSTIC, 10, -6.220848755951e-01, 1.699496436392e-03, 8.6646e-01, 1.5817e-02, - 2DIAGNOSTIC, 11, -6.223829247383e-01, 1.483005443658e-03, 8.8229e-01, 1.5829e-02, - 2DIAGNOSTIC, 12, -6.223626352998e-01, 1.217743720106e-03, 8.9850e-01, 1.6215e-02, - 2DIAGNOSTIC, 13, -6.224298766421e-01, 9.492943619271e-04, 9.1451e-01, 1.6009e-02, - 2DIAGNOSTIC, 14, -6.224090538829e-01, 6.952279233017e-04, 9.3046e-01, 1.5951e-02, - 2DIAGNOSTIC, 15, -6.224243600604e-01, 4.847431274314e-04, 9.4862e-01, 1.8160e-02, - 2DIAGNOSTIC, 16, -6.224487058059e-01, 2.900284363119e-04, 9.6421e-01, 1.5591e-02, - 2DIAGNOSTIC, 17, -6.224543126867e-01, 1.670756343463e-04, 9.8579e-01, 2.1579e-02, - 2DIAGNOSTIC, 18, -6.224456401797e-01, 6.079338633490e-05, 1.0015e+00, 1.5726e-02, - 2DIAGNOSTIC, 19, -6.224539692432e-01, 1.377724750827e-05, 1.0148e+00, 1.3292e-02, - 2DIAGNOSTIC, 20, -6.224338599343e-01, 5.438096560284e-06, 1.0303e+00, 1.5465e-02, - 2DIAGNOSTIC, 21, -6.224367366513e-01, 4.150076475889e-06, 1.0450e+00, 1.4689e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.192447423978e-01, 1.797693134862e+308, 1.4755e+00, 4.3052e-01, - 2DIAGNOSTIC, 2, -5.196029184960e-01, 1.797693134862e+308, 1.5653e+00, 8.9865e-02, - 2DIAGNOSTIC, 3, -5.200229417848e-01, 1.797693134862e+308, 1.6530e+00, 8.7636e-02, - 2DIAGNOSTIC, 4, -5.206990910637e-01, 1.797693134862e+308, 1.7396e+00, 8.6606e-02, - 2DIAGNOSTIC, 5, -5.217416686601e-01, 1.797693134862e+308, 1.8249e+00, 8.5335e-02, - 2DIAGNOSTIC, 6, -5.232937329689e-01, 1.797693134862e+308, 1.9465e+00, 1.2156e-01, - 2DIAGNOSTIC, 7, -5.237353040285e-01, 1.797693134862e+308, 2.0766e+00, 1.3016e-01, - 2DIAGNOSTIC, 8, -5.240511587885e-01, 1.797693134862e+308, 2.1741e+00, 9.7509e-02, - 2DIAGNOSTIC, 9, -5.244920086175e-01, 1.797693134862e+308, 2.2719e+00, 9.7774e-02, - 2DIAGNOSTIC, 10, -5.263757602202e-01, 8.685694208162e-04, 2.3718e+00, 9.9902e-02, - 2DIAGNOSTIC, 11, -5.304126163796e-01, 9.993848238547e-04, 2.4966e+00, 1.2480e-01, - 2DIAGNOSTIC, 12, -5.309145278241e-01, 1.053756783386e-03, 2.6537e+00, 1.5705e-01, - 2DIAGNOSTIC, 13, -5.310491073321e-01, 1.031081556669e-03, 2.7495e+00, 9.5801e-02, - 2DIAGNOSTIC, 14, -5.314211345950e-01, 9.607117851439e-04, 2.8444e+00, 9.4887e-02, - 2DIAGNOSTIC, 15, -5.317342560830e-01, 8.582699394230e-04, 2.9408e+00, 9.6399e-02, - 2DIAGNOSTIC, 16, -5.319234354316e-01, 7.464200962011e-04, 3.0765e+00, 1.3578e-01, - 2DIAGNOSTIC, 17, -5.320100793167e-01, 5.964049912989e-04, 3.1740e+00, 9.7452e-02, - 2DIAGNOSTIC, 18, -5.324919016233e-01, 4.345120575755e-04, 3.2816e+00, 1.0763e-01, - 2DIAGNOSTIC, 19, -5.327058231931e-01, 2.679415718725e-04, 3.3884e+00, 1.0683e-01, - 2DIAGNOSTIC, 20, -5.327691532872e-01, 1.429101595326e-04, 3.4981e+00, 1.0963e-01, - 2DIAGNOSTIC, 21, -5.329689293792e-01, 1.254164644632e-04, 3.6289e+00, 1.3086e-01, - 2DIAGNOSTIC, 22, -5.332930664022e-01, 1.181985100564e-04, 3.7217e+00, 9.2797e-02, - 2DIAGNOSTIC, 23, -5.333549125261e-01, 1.048530252418e-04, 3.8459e+00, 1.2414e-01, - 2DIAGNOSTIC, 24, -5.333719350899e-01, 9.153698078095e-05, 3.9853e+00, 1.3938e-01, - 2DIAGNOSTIC, 25, -5.333768034017e-01, 7.781058312453e-05, 4.0942e+00, 1.0891e-01, - 2DIAGNOSTIC, 26, -5.333756192875e-01, 6.190683921758e-05, 4.2240e+00, 1.2983e-01, - 2DIAGNOSTIC, 27, -5.333739739247e-01, 4.284691482249e-05, 4.3319e+00, 1.0793e-01, - 2DIAGNOSTIC, 28, -5.333705663482e-01, 3.033177912189e-05, 4.4454e+00, 1.1351e-01, - 2DIAGNOSTIC, 29, -5.333689716086e-01, 1.996511447888e-05, 4.5734e+00, 1.2793e-01, - 2DIAGNOSTIC, 30, -5.333672610687e-01, 9.598144351822e-06, 4.6881e+00, 1.1472e-01, - 2DIAGNOSTIC, 31, -5.333655246560e-01, 2.384886371803e-06, 4.7918e+00, 1.0372e-01, - Elapsed time (stage 1): 4.9202e+00 - - -Total elapsed time: 8.7778e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:37:52 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:37:53 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5613bdfb84f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.351, 60.3703, -104.161] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5613bdfbdfa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7facdf698010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5613bdfb9850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.351, 60.3703, -104.161] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5613bdfb6f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7facdbfd9010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5613bdfd0b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.351, 60.3703, -104.161] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5613bdfbd550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7facd891a010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5613bdfd5d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.351, 60.3703, -104.161] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5613bdfd3c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7facd525b010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x5613bdfd7f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.351, 60.3703, -104.161] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5613bdfd63a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7facd1b9c010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x5613bdfd8540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.351, 60.3703, -104.161] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5613bdfd84d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7facce4dd010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.726358000069e-01, 1.797693134862e+308, 2.2116e-01, 2.2116e-01, - 2DIAGNOSTIC, 2, -5.752257469352e-01, 1.797693134862e+308, 2.2325e-01, 2.0909e-03, - 2DIAGNOSTIC, 3, -5.789622805395e-01, 1.797693134862e+308, 2.2524e-01, 1.9898e-03, - 2DIAGNOSTIC, 4, -5.841862589475e-01, 1.797693134862e+308, 2.2722e-01, 1.9801e-03, - 2DIAGNOSTIC, 5, -5.901261808676e-01, 1.797693134862e+308, 2.2945e-01, 2.2349e-03, - 2DIAGNOSTIC, 6, -5.925306142273e-01, 1.797693134862e+308, 2.3163e-01, 2.1780e-03, - 2DIAGNOSTIC, 7, -5.935025735188e-01, 1.797693134862e+308, 2.3370e-01, 2.0659e-03, - 2DIAGNOSTIC, 8, -5.939588362441e-01, 1.797693134862e+308, 2.3581e-01, 2.1169e-03, - 2DIAGNOSTIC, 9, -5.967592970597e-01, 1.797693134862e+308, 2.3877e-01, 2.9540e-03, - 2DIAGNOSTIC, 10, -5.977736472021e-01, 2.867958087827e-03, 2.4098e-01, 2.2080e-03, - 2DIAGNOSTIC, 11, -5.977016665938e-01, 2.184416019902e-03, 2.4313e-01, 2.1501e-03, - 2DIAGNOSTIC, 12, -5.986279347457e-01, 1.565642915223e-03, 2.4609e-01, 2.9600e-03, - 2DIAGNOSTIC, 13, -5.991633139067e-01, 1.058050982521e-03, 2.5312e-01, 7.0312e-03, - 2DIAGNOSTIC, 14, -5.991633072233e-01, 7.014488733309e-04, 2.5533e-01, 2.2082e-03, - 2DIAGNOSTIC, 15, -5.991633299737e-01, 5.178140582083e-04, 2.5755e-01, 2.2221e-03, - 2DIAGNOSTIC, 16, -5.991633684386e-01, 3.831224935598e-04, 2.5978e-01, 2.2340e-03, - 2DIAGNOSTIC, 17, -5.991634334654e-01, 2.574034037566e-04, 2.6200e-01, 2.2149e-03, - 2DIAGNOSTIC, 18, -5.991635433766e-01, 1.321994144703e-04, 2.6423e-01, 2.2359e-03, - 2DIAGNOSTIC, 19, -5.991637290975e-01, 7.846121738118e-05, 2.6643e-01, 2.1980e-03, - 2DIAGNOSTIC, 20, -5.991640427567e-01, 4.785064606897e-05, 2.6867e-01, 2.2368e-03, - 2DIAGNOSTIC, 21, -5.991645720298e-01, 1.378910690535e-05, 2.7086e-01, 2.1880e-03, - 2DIAGNOSTIC, 22, -5.991654638227e-01, 1.544719680002e-06, 2.7310e-01, 2.2409e-03, - 2DIAGNOSTIC, 23, -5.991669627318e-01, 1.533932535151e-06, 2.7529e-01, 2.1930e-03, - 2DIAGNOSTIC, 24, -5.991694705927e-01, 1.560327340722e-06, 2.7745e-01, 2.1589e-03, - 2DIAGNOSTIC, 25, -5.991736310109e-01, 1.642695892493e-06, 2.7961e-01, 2.1601e-03, - 2DIAGNOSTIC, 26, -5.991804275394e-01, 1.809072252036e-06, 2.8178e-01, 2.1760e-03, - 2DIAGNOSTIC, 27, -5.991910562421e-01, 2.095854543679e-06, 2.8400e-01, 2.2202e-03, - 2DIAGNOSTIC, 28, -5.992078232552e-01, 2.561046167478e-06, 2.8619e-01, 2.1808e-03, - 2DIAGNOSTIC, 29, -5.992338143670e-01, 3.286405981628e-06, 2.8868e-01, 2.4929e-03, - 2DIAGNOSTIC, 30, -5.992584500115e-01, 4.146669486033e-06, 2.9144e-01, 2.7661e-03, - 2DIAGNOSTIC, 31, -5.991626910641e-01, 3.189367315311e-06, 2.9369e-01, 2.2478e-03, - 2DIAGNOSTIC, 32, -5.991911049726e-01, 2.573427106529e-06, 2.9618e-01, 2.4869e-03, - 2DIAGNOSTIC, 33, -5.992014753248e-01, 1.990062742659e-06, 2.9836e-01, 2.1811e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.929077810402e-01, 1.797693134862e+308, 5.4219e-01, 2.4383e-01, - 2DIAGNOSTIC, 2, -4.933495086848e-01, 1.797693134862e+308, 5.5663e-01, 1.4440e-02, - 2DIAGNOSTIC, 3, -4.939656953719e-01, 1.797693134862e+308, 5.7210e-01, 1.5469e-02, - 2DIAGNOSTIC, 4, -4.942398167587e-01, 1.797693134862e+308, 5.9063e-01, 1.8530e-02, - 2DIAGNOSTIC, 5, -4.942705481288e-01, 1.797693134862e+308, 6.0570e-01, 1.5072e-02, - 2DIAGNOSTIC, 6, -4.942517567384e-01, 1.797693134862e+308, 6.2558e-01, 1.9885e-02, - 2DIAGNOSTIC, 7, -4.942464048805e-01, 1.797693134862e+308, 6.4050e-01, 1.4920e-02, - 2DIAGNOSTIC, 8, -4.942391236610e-01, 1.797693134862e+308, 6.5422e-01, 1.3720e-02, - 2DIAGNOSTIC, 9, -4.942352178997e-01, 1.797693134862e+308, 6.6959e-01, 1.5367e-02, - 2DIAGNOSTIC, 10, -4.942412610862e-01, 1.354597851304e-04, 6.8362e-01, 1.4029e-02, - 2DIAGNOSTIC, 11, -4.942141136067e-01, 5.971967793411e-05, 6.9969e-01, 1.6069e-02, - 2DIAGNOSTIC, 12, -4.942278063634e-01, 1.272752944297e-05, 7.1578e-01, 1.6095e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.172080774132e-01, 1.797693134862e+308, 1.1446e+00, 4.2885e-01, - 2DIAGNOSTIC, 2, -4.175619880438e-01, 1.797693134862e+308, 1.2402e+00, 9.5598e-02, - 2DIAGNOSTIC, 3, -4.177170233817e-01, 1.797693134862e+308, 1.3770e+00, 1.3678e-01, - 2DIAGNOSTIC, 4, -4.177366309077e-01, 1.797693134862e+308, 1.4695e+00, 9.2448e-02, - 2DIAGNOSTIC, 5, -4.177407586393e-01, 1.797693134862e+308, 1.5572e+00, 8.7719e-02, - 2DIAGNOSTIC, 6, -4.177491940605e-01, 1.797693134862e+308, 1.6523e+00, 9.5164e-02, - 2DIAGNOSTIC, 7, -4.177979472908e-01, 1.797693134862e+308, 1.7401e+00, 8.7786e-02, - 2DIAGNOSTIC, 8, -4.178772960198e-01, 1.797693134862e+308, 1.8456e+00, 1.0546e-01, - 2DIAGNOSTIC, 9, -4.179065204323e-01, 1.797693134862e+308, 1.9823e+00, 1.3672e-01, - 2DIAGNOSTIC, 10, -4.179064995532e-01, 8.087773674902e-05, 2.1013e+00, 1.1900e-01, - 2DIAGNOSTIC, 11, -4.178949370685e-01, 4.554184372497e-05, 2.2068e+00, 1.0552e-01, - 2DIAGNOSTIC, 12, -4.178850016565e-01, 3.152055942988e-05, 2.3105e+00, 1.0370e-01, - 2DIAGNOSTIC, 13, -4.178823849559e-01, 2.492952996137e-05, 2.3989e+00, 8.8311e-02, - 2DIAGNOSTIC, 14, -4.178805992513e-01, 1.809246956194e-05, 2.4984e+00, 9.9565e-02, - 2DIAGNOSTIC, 15, -4.178781842242e-01, 1.086565005855e-05, 2.6379e+00, 1.3945e-01, - 2DIAGNOSTIC, 16, -4.178788943181e-01, 4.140960405782e-06, 2.7445e+00, 1.0666e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.635486388641e-01, 1.797693134862e+308, 3.9351e+00, 1.1905e+00, - 2DIAGNOSTIC, 2, -3.637558112914e-01, 1.797693134862e+308, 4.4207e+00, 4.8569e-01, - 2DIAGNOSTIC, 3, -3.638162881207e-01, 1.797693134862e+308, 5.1113e+00, 6.9055e-01, - 2DIAGNOSTIC, 4, -3.638195911690e-01, 1.797693134862e+308, 6.1727e+00, 1.0614e+00, - 2DIAGNOSTIC, 5, -3.638191739528e-01, 1.797693134862e+308, 6.9756e+00, 8.0286e-01, - 2DIAGNOSTIC, 6, -3.638192864370e-01, 1.797693134862e+308, 7.5924e+00, 6.1686e-01, - 2DIAGNOSTIC, 7, -3.638192029653e-01, 1.797693134862e+308, 8.1491e+00, 5.5670e-01, - 2DIAGNOSTIC, 8, -3.638191134361e-01, 1.797693134862e+308, 8.7203e+00, 5.7119e-01, - 2DIAGNOSTIC, 9, -3.638188892162e-01, 1.797693134862e+308, 9.2565e+00, 5.3617e-01, - 2DIAGNOSTIC, 10, -3.638188307850e-01, 2.873722574021e-05, 9.8806e+00, 6.2413e-01, - 2DIAGNOSTIC, 11, -3.638187722965e-01, 7.483473174086e-06, 1.0506e+01, 6.2541e-01, - 2DIAGNOSTIC, 12, -3.638184355037e-01, 2.715543913873e-06, 1.1126e+01, 6.1977e-01, - 2DIAGNOSTIC, 13, -3.638185154129e-01, 2.309313124657e-06, 1.1706e+01, 5.8054e-01, - 2DIAGNOSTIC, 14, -3.638183049016e-01, 2.146708006676e-06, 1.2222e+01, 5.1570e-01, - 2DIAGNOSTIC, 15, -3.638182696215e-01, 1.993570218642e-06, 1.2980e+01, 7.5809e-01, - 2DIAGNOSTIC, 16, -3.638182975433e-01, 1.878092953475e-06, 1.3597e+01, 6.1672e-01, - 2DIAGNOSTIC, 17, -3.638180680850e-01, 1.771954758714e-06, 1.4232e+01, 6.3483e-01, - 2DIAGNOSTIC, 18, -3.638175693255e-01, 1.661766049162e-06, 1.4786e+01, 5.5408e-01, - 2DIAGNOSTIC, 19, -3.638175020399e-01, 1.561415522121e-06, 1.5403e+01, 6.1719e-01, - 2DIAGNOSTIC, 20, -3.638173129417e-01, 1.471622526596e-06, 1.5970e+01, 5.6670e-01, - 2DIAGNOSTIC, 21, -3.638173136755e-01, 1.399469035865e-06, 1.6592e+01, 6.2250e-01, - 2DIAGNOSTIC, 22, -3.638171317901e-01, 1.326115353063e-06, 1.7232e+01, 6.3949e-01, - 2DIAGNOSTIC, 23, -3.638169396710e-01, 1.267144530283e-06, 1.7850e+01, 6.1826e-01, - 2DIAGNOSTIC, 24, -3.638167621456e-01, 1.211477408371e-06, 1.8463e+01, 6.1327e-01, - 2DIAGNOSTIC, 25, -3.638166949604e-01, 1.167500656964e-06, 1.9074e+01, 6.1087e-01, - 2DIAGNOSTIC, 26, -3.638166277404e-01, 1.135520951538e-06, 1.9666e+01, 5.9237e-01, - 2DIAGNOSTIC, 27, -3.638164019732e-01, 1.101384995046e-06, 2.0273e+01, 6.0677e-01, - 2DIAGNOSTIC, 28, -3.638163058881e-01, 1.060580222062e-06, 2.0820e+01, 5.4707e-01, - 2DIAGNOSTIC, 29, -3.638159671439e-01, 1.018929241377e-06, 2.1430e+01, 6.0958e-01, - Elapsed time (stage 0): 2.1807e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.761528457153e-01, 1.797693134862e+308, 1.8196e-01, 1.8196e-01, - 2DIAGNOSTIC, 2, -5.770940203442e-01, 1.797693134862e+308, 1.8385e-01, 1.8940e-03, - 2DIAGNOSTIC, 3, -5.782681994321e-01, 1.797693134862e+308, 1.8567e-01, 1.8160e-03, - 2DIAGNOSTIC, 4, -5.793533838574e-01, 1.797693134862e+308, 1.8747e-01, 1.8010e-03, - 2DIAGNOSTIC, 5, -5.803431580133e-01, 1.797693134862e+308, 1.8958e-01, 2.1100e-03, - 2DIAGNOSTIC, 6, -5.811959453317e-01, 1.797693134862e+308, 1.9257e-01, 2.9941e-03, - 2DIAGNOSTIC, 7, -5.816521580997e-01, 1.797693134862e+308, 1.9554e-01, 2.9678e-03, - 2DIAGNOSTIC, 8, -5.820712634834e-01, 1.797693134862e+308, 1.9814e-01, 2.6002e-03, - 2DIAGNOSTIC, 9, -5.820817047480e-01, 1.797693134862e+308, 2.0060e-01, 2.4571e-03, - 2DIAGNOSTIC, 10, -5.821779987410e-01, 7.022296349646e-04, 2.0290e-01, 2.2979e-03, - 2DIAGNOSTIC, 11, -5.821704446915e-01, 5.056185660433e-04, 2.0525e-01, 2.3551e-03, - 2DIAGNOSTIC, 12, -5.823197138270e-01, 3.406758548853e-04, 2.0841e-01, 3.1569e-03, - 2DIAGNOSTIC, 13, -5.823925520020e-01, 2.169955366601e-04, 2.1400e-01, 5.5890e-03, - 2DIAGNOSTIC, 14, -5.823926092022e-01, 1.290322825639e-04, 2.1641e-01, 2.4140e-03, - 2DIAGNOSTIC, 15, -5.823937440008e-01, 7.324517953902e-05, 2.1886e-01, 2.4481e-03, - 2DIAGNOSTIC, 16, -5.823956298577e-01, 4.383396413489e-05, 2.2128e-01, 2.4202e-03, - 2DIAGNOSTIC, 17, -5.823987247206e-01, 2.687896341131e-05, 2.2377e-01, 2.4960e-03, - 2DIAGNOSTIC, 18, -5.824037054609e-01, 2.099651472879e-05, 2.2622e-01, 2.4419e-03, - 2DIAGNOSTIC, 19, -5.824114881205e-01, 1.440248294987e-05, 2.2861e-01, 2.3940e-03, - 2DIAGNOSTIC, 20, -5.824229611428e-01, 9.996787012918e-06, 2.3138e-01, 2.7711e-03, - 2DIAGNOSTIC, 21, -5.824380592342e-01, 5.320541232069e-06, 2.3425e-01, 2.8639e-03, - 2DIAGNOSTIC, 22, -5.824555814112e-01, 4.370360588049e-06, 2.3659e-01, 2.3439e-03, - 2DIAGNOSTIC, 23, -5.824731582753e-01, 5.146819581532e-06, 2.3889e-01, 2.2981e-03, - 2DIAGNOSTIC, 24, -5.824901104450e-01, 5.848297794243e-06, 2.4099e-01, 2.1050e-03, - 2DIAGNOSTIC, 25, -5.825071640831e-01, 6.420733629782e-06, 2.4314e-01, 2.1451e-03, - 2DIAGNOSTIC, 26, -5.825268779410e-01, 6.866164736240e-06, 2.4519e-01, 2.0480e-03, - 2DIAGNOSTIC, 27, -5.825912059085e-01, 7.961045598283e-06, 2.4753e-01, 2.3429e-03, - 2DIAGNOSTIC, 28, -5.827721268683e-01, 1.155462141260e-05, 2.4990e-01, 2.3680e-03, - 2DIAGNOSTIC, 29, -5.827962255314e-01, 1.437996672132e-05, 2.5386e-01, 3.9680e-03, - 2DIAGNOSTIC, 30, -5.827965211969e-01, 1.598803536402e-05, 2.5667e-01, 2.8062e-03, - 2DIAGNOSTIC, 31, -5.827965678762e-01, 1.635870183692e-05, 2.5912e-01, 2.4450e-03, - 2DIAGNOSTIC, 32, -5.827965819096e-01, 1.549886519454e-05, 2.6154e-01, 2.4230e-03, - 2DIAGNOSTIC, 33, -5.827965925735e-01, 1.352663512601e-05, 2.6401e-01, 2.4688e-03, - 2DIAGNOSTIC, 34, -5.827966041836e-01, 1.071773341546e-05, 2.6658e-01, 2.5759e-03, - 2DIAGNOSTIC, 35, -5.827966216963e-01, 7.421340232898e-06, 2.6882e-01, 2.2368e-03, - 2DIAGNOSTIC, 36, -5.827967381388e-01, 3.968158812848e-06, 2.7104e-01, 2.2180e-03, - 2DIAGNOSTIC, 37, -5.827970982432e-01, 1.197819520318e-06, 2.7313e-01, 2.0959e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.922730520994e-01, 1.797693134862e+308, 4.7780e-01, 2.0467e-01, - 2DIAGNOSTIC, 2, -4.931619050559e-01, 1.797693134862e+308, 4.9211e-01, 1.4303e-02, - 2DIAGNOSTIC, 3, -4.941494539763e-01, 1.797693134862e+308, 5.0564e-01, 1.3530e-02, - 2DIAGNOSTIC, 4, -4.946777224619e-01, 1.797693134862e+308, 5.2004e-01, 1.4407e-02, - 2DIAGNOSTIC, 5, -4.948882267839e-01, 1.797693134862e+308, 5.3255e-01, 1.2508e-02, - 2DIAGNOSTIC, 6, -4.951109336668e-01, 1.797693134862e+308, 5.4589e-01, 1.3338e-02, - 2DIAGNOSTIC, 7, -4.954732795990e-01, 1.797693134862e+308, 5.6375e-01, 1.7855e-02, - 2DIAGNOSTIC, 8, -4.954960736469e-01, 1.797693134862e+308, 5.7711e-01, 1.3369e-02, - 2DIAGNOSTIC, 9, -4.954923867155e-01, 1.797693134862e+308, 5.8908e-01, 1.1969e-02, - 2DIAGNOSTIC, 10, -4.954935614000e-01, 3.829979635718e-04, 6.0429e-01, 1.5205e-02, - 2DIAGNOSTIC, 11, -4.954871158670e-01, 2.334836952760e-04, 6.1778e-01, 1.3496e-02, - 2DIAGNOSTIC, 12, -4.954790263901e-01, 1.291974651037e-04, 6.2960e-01, 1.1817e-02, - 2DIAGNOSTIC, 13, -4.954734956859e-01, 7.247453376143e-05, 6.4151e-01, 1.1906e-02, - 2DIAGNOSTIC, 14, -4.954845604425e-01, 3.973201763437e-05, 6.5627e-01, 1.4762e-02, - 2DIAGNOSTIC, 15, -4.954976212788e-01, 1.641793943329e-05, 6.7173e-01, 1.5459e-02, - 2DIAGNOSTIC, 16, -4.954960580765e-01, 2.274970333546e-06, 6.8532e-01, 1.3588e-02, - 2DIAGNOSTIC, 17, -4.955126506886e-01, 2.566432728335e-06, 6.9912e-01, 1.3807e-02, - 2DIAGNOSTIC, 18, -4.955375399394e-01, 4.276500987034e-06, 7.1289e-01, 1.3766e-02, - 2DIAGNOSTIC, 19, -4.955465662945e-01, 5.705267644984e-06, 7.3146e-01, 1.8570e-02, - 2DIAGNOSTIC, 20, -4.955610287061e-01, 7.066960903399e-06, 7.4534e-01, 1.3878e-02, - 2DIAGNOSTIC, 21, -4.955696770905e-01, 7.858918275219e-06, 7.6064e-01, 1.5299e-02, - 2DIAGNOSTIC, 22, -4.955900590099e-01, 8.312840609356e-06, 7.7649e-01, 1.5856e-02, - 2DIAGNOSTIC, 23, -4.955965384540e-01, 8.085016317265e-06, 7.9116e-01, 1.4669e-02, - 2DIAGNOSTIC, 24, -4.955917292538e-01, 7.392404287654e-06, 8.1270e-01, 2.1539e-02, - 2DIAGNOSTIC, 25, -4.956046087935e-01, 6.801600883746e-06, 8.2860e-01, 1.5899e-02, - 2DIAGNOSTIC, 26, -4.956057740193e-01, 5.713754135321e-06, 8.4268e-01, 1.4081e-02, - 2DIAGNOSTIC, 27, -4.956112019125e-01, 4.736346835781e-06, 8.5867e-01, 1.5990e-02, - 2DIAGNOSTIC, 28, -4.956122571287e-01, 4.024201567587e-06, 8.7257e-01, 1.3902e-02, - 2DIAGNOSTIC, 29, -4.956047086358e-01, 3.119461271114e-06, 8.8672e-01, 1.4145e-02, - 2DIAGNOSTIC, 30, -4.956099747642e-01, 2.465461200384e-06, 9.0854e-01, 2.1820e-02, - 2DIAGNOSTIC, 31, -4.956109401516e-01, 1.882102094397e-06, 9.2247e-01, 1.3930e-02, - 2DIAGNOSTIC, 32, -4.956112945020e-01, 1.622090430753e-06, 9.3829e-01, 1.5827e-02, - 2DIAGNOSTIC, 33, -4.956113274455e-01, 1.438368401878e-06, 9.8522e-01, 4.6925e-02, - 2DIAGNOSTIC, 34, -4.956113274398e-01, 1.136880012419e-06, 1.0311e+00, 4.5832e-02, - 2DIAGNOSTIC, 35, -4.956113274398e-01, 1.044578707872e-06, 1.0499e+00, 1.8865e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.185823991340e-01, 1.797693134862e+308, 1.4221e+00, 3.7223e-01, - 2DIAGNOSTIC, 2, -4.189765771652e-01, 1.797693134862e+308, 1.5068e+00, 8.4671e-02, - 2DIAGNOSTIC, 3, -4.191532364347e-01, 1.797693134862e+308, 1.5906e+00, 8.3759e-02, - 2DIAGNOSTIC, 4, -4.192691043356e-01, 1.797693134862e+308, 1.6730e+00, 8.2447e-02, - 2DIAGNOSTIC, 5, -4.194293578327e-01, 1.797693134862e+308, 1.7795e+00, 1.0645e-01, - 2DIAGNOSTIC, 6, -4.195812903189e-01, 1.797693134862e+308, 1.8931e+00, 1.1361e-01, - 2DIAGNOSTIC, 7, -4.196159052513e-01, 1.797693134862e+308, 1.9945e+00, 1.0138e-01, - 2DIAGNOSTIC, 8, -4.196372492602e-01, 1.797693134862e+308, 2.1094e+00, 1.1492e-01, - 2DIAGNOSTIC, 9, -4.196416797871e-01, 1.797693134862e+308, 2.2786e+00, 1.6926e-01, - 2DIAGNOSTIC, 10, -4.196408557019e-01, 1.500013182794e-04, 2.3776e+00, 9.8938e-02, - 2DIAGNOSTIC, 11, -4.196460999621e-01, 9.283321768833e-05, 2.4766e+00, 9.8977e-02, - 2DIAGNOSTIC, 12, -4.196520891727e-01, 5.959836634283e-05, 2.5687e+00, 9.2098e-02, - 2DIAGNOSTIC, 13, -4.196570737050e-01, 3.582997759437e-05, 2.6627e+00, 9.4021e-02, - 2DIAGNOSTIC, 14, -4.196610896900e-01, 1.811621402624e-05, 2.7458e+00, 8.3135e-02, - 2DIAGNOSTIC, 15, -4.196643815651e-01, 8.545385984063e-06, 2.8542e+00, 1.0840e-01, - 2DIAGNOSTIC, 16, -4.196661911504e-01, 6.061786248762e-06, 2.9376e+00, 8.3428e-02, - 2DIAGNOSTIC, 17, -4.196666458661e-01, 4.867030699005e-06, 3.0374e+00, 9.9725e-02, - 2DIAGNOSTIC, 18, -4.196702789331e-01, 4.464359599311e-06, 3.1234e+00, 8.6038e-02, - 2DIAGNOSTIC, 19, -4.196761296431e-01, 4.221424095369e-06, 3.2087e+00, 8.5298e-02, - 2DIAGNOSTIC, 20, -4.196964826698e-01, 4.421197781518e-06, 3.3034e+00, 9.4656e-02, - 2DIAGNOSTIC, 21, -4.197202032795e-01, 5.255154010390e-06, 3.6401e+00, 3.3675e-01, - 2DIAGNOSTIC, 22, -4.197202032606e-01, 5.835990979301e-06, 3.9870e+00, 3.4692e-01, - 2DIAGNOSTIC, 23, -4.197202032606e-01, 6.116758441838e-06, 4.1026e+00, 1.1561e-01, - 2DIAGNOSTIC, 24, -4.197202032606e-01, 6.047538654401e-06, 4.2164e+00, 1.1377e-01, - 2DIAGNOSTIC, 25, -4.197202032606e-01, 5.617726072722e-06, 4.3299e+00, 1.1346e-01, - 2DIAGNOSTIC, 26, -4.197202032606e-01, 4.850370183752e-06, 4.4575e+00, 1.2768e-01, - 2DIAGNOSTIC, 27, -4.197202032606e-01, 3.814953235953e-06, 4.5729e+00, 1.1535e-01, - 2DIAGNOSTIC, 28, -4.197202032606e-01, 2.703987807433e-06, 4.6957e+00, 1.2284e-01, - 2DIAGNOSTIC, 29, -4.197202032606e-01, 1.651335959918e-06, 4.8032e+00, 1.0748e-01, - 2DIAGNOSTIC, 30, -4.197202032606e-01, 1.060685814860e-06, 4.9060e+00, 1.0277e-01, - 2DIAGNOSTIC, 31, -4.197202032606e-01, 1.026459456120e-06, 5.0187e+00, 1.1270e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.639445704248e-01, 1.797693134862e+308, 6.2889e+00, 1.2702e+00, - 2DIAGNOSTIC, 2, -3.640927352682e-01, 1.797693134862e+308, 6.9045e+00, 6.1561e-01, - 2DIAGNOSTIC, 3, -3.641888106725e-01, 1.797693134862e+308, 7.4975e+00, 5.9297e-01, - 2DIAGNOSTIC, 4, -3.642606467673e-01, 1.797693134862e+308, 8.1035e+00, 6.0605e-01, - 2DIAGNOSTIC, 5, -3.642993177231e-01, 1.797693134862e+308, 8.6629e+00, 5.5941e-01, - 2DIAGNOSTIC, 6, -3.643454618750e-01, 1.797693134862e+308, 9.4222e+00, 7.5927e-01, - 2DIAGNOSTIC, 7, -3.643741023931e-01, 1.797693134862e+308, 1.0098e+01, 6.7618e-01, - 2DIAGNOSTIC, 8, -3.643789971551e-01, 1.797693134862e+308, 1.0919e+01, 8.2060e-01, - 2DIAGNOSTIC, 9, -3.643791846678e-01, 1.797693134862e+308, 1.2865e+01, 1.9455e+00, - 2DIAGNOSTIC, 10, -3.643791846513e-01, 7.176201558931e-05, 1.4854e+01, 1.9899e+00, - 2DIAGNOSTIC, 11, -3.643791846513e-01, 4.388265307834e-05, 1.5610e+01, 7.5577e-01, - 2DIAGNOSTIC, 12, -3.643791846513e-01, 2.648339259356e-05, 1.6291e+01, 6.8121e-01, - 2DIAGNOSTIC, 13, -3.643791846513e-01, 1.531369582865e-05, 1.6915e+01, 6.2327e-01, - 2DIAGNOSTIC, 14, -3.643791846513e-01, 8.568590464483e-06, 1.7802e+01, 8.8698e-01, - 2DIAGNOSTIC, 15, -3.643791846513e-01, 4.112768074951e-06, 1.8424e+01, 6.2278e-01, - 2DIAGNOSTIC, 16, -3.643791846513e-01, 2.244301452875e-06, 1.9107e+01, 6.8286e-01, - 2DIAGNOSTIC, 17, -3.643791846513e-01, 1.880122574432e-06, 1.9781e+01, 6.7398e-01, - 2DIAGNOSTIC, 18, -3.643791846513e-01, 1.767526820934e-06, 2.0443e+01, 6.6159e-01, - 2DIAGNOSTIC, 19, -3.643791846513e-01, 1.674484332956e-06, 2.1088e+01, 6.4529e-01, - 2DIAGNOSTIC, 20, -3.643791846513e-01, 1.590746915775e-06, 2.1691e+01, 6.0298e-01, - 2DIAGNOSTIC, 21, -3.643791846513e-01, 1.514985688171e-06, 2.2348e+01, 6.5706e-01, - 2DIAGNOSTIC, 22, -3.643791846513e-01, 1.446112832072e-06, 2.3020e+01, 6.7211e-01, - 2DIAGNOSTIC, 23, -3.643791846513e-01, 1.383229741053e-06, 2.3776e+01, 7.5525e-01, - 2DIAGNOSTIC, 24, -3.643791846513e-01, 1.325587596170e-06, 2.4390e+01, 6.1436e-01, - 2DIAGNOSTIC, 25, -3.643791846513e-01, 1.272557404466e-06, 2.5067e+01, 6.7746e-01, - 2DIAGNOSTIC, 26, -3.643791846513e-01, 1.223606952976e-06, 2.5728e+01, 6.6067e-01, - 2DIAGNOSTIC, 27, -3.643791846513e-01, 1.178282884338e-06, 2.6391e+01, 6.6241e-01, - 2DIAGNOSTIC, 28, -3.643791846513e-01, 1.136196613766e-06, 2.7071e+01, 6.8084e-01, - 2DIAGNOSTIC, 29, -3.643791846513e-01, 1.097013160201e-06, 2.7745e+01, 6.7397e-01, - 2DIAGNOSTIC, 30, -3.643791846513e-01, 1.060442211445e-06, 2.8424e+01, 6.7866e-01, - 2DIAGNOSTIC, 31, -3.643791846513e-01, 1.026230918709e-06, 2.9198e+01, 7.7387e-01, - Elapsed time (stage 1): 2.9595e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.978664964672e-01, 1.797693134862e+308, 2.5790e-01, 2.5790e-01, - 1DIAGNOSTIC, 2, -9.078866135940e-01, 1.797693134862e+308, 3.5458e-01, 9.6675e-02, - 1DIAGNOSTIC, 3, -9.165310793355e-01, 1.797693134862e+308, 4.5014e-01, 9.5562e-02, - 1DIAGNOSTIC, 4, -9.240121375679e-01, 1.797693134862e+308, 5.4368e-01, 9.3536e-02, - 1DIAGNOSTIC, 5, -9.306743117923e-01, 1.797693134862e+308, 6.3552e-01, 9.1844e-02, - 1DIAGNOSTIC, 6, -9.357448460866e-01, 1.797693134862e+308, 7.3330e-01, 9.7778e-02, - 1DIAGNOSTIC, 7, -9.400308485245e-01, 1.797693134862e+308, 8.3690e-01, 1.0360e-01, - 1DIAGNOSTIC, 8, -9.434294624932e-01, 1.797693134862e+308, 9.3543e-01, 9.8524e-02, - 1DIAGNOSTIC, 9, -9.463083554571e-01, 1.797693134862e+308, 1.0365e+00, 1.0106e-01, - 1DIAGNOSTIC, 10, -9.488228170568e-01, 3.420673661151e-03, 1.1350e+00, 9.8494e-02, - 1DIAGNOSTIC, 11, -9.510506524866e-01, 2.602706743224e-03, 1.2329e+00, 9.7893e-02, - 1DIAGNOSTIC, 12, -9.530852616945e-01, 1.993215690192e-03, 1.3351e+00, 1.0221e-01, - 1DIAGNOSTIC, 13, -9.549102694651e-01, 1.541673914816e-03, 1.4386e+00, 1.0347e-01, - 1DIAGNOSTIC, 14, -9.564137072267e-01, 1.208404194710e-03, 1.5317e+00, 9.3106e-02, - 1DIAGNOSTIC, 15, -9.577193306609e-01, 9.696745001605e-04, 1.6313e+00, 9.9619e-02, - 1DIAGNOSTIC, 16, -9.588955808567e-01, 7.894052947091e-04, 1.7269e+00, 9.5642e-02, - 1DIAGNOSTIC, 17, -9.593676850759e-01, 6.418132439036e-04, 1.8200e+00, 9.3096e-02, - 1DIAGNOSTIC, 18, -9.596958507384e-01, 5.137577396284e-04, 1.9184e+00, 9.8419e-02, - 1DIAGNOSTIC, 19, -9.594481434871e-01, 3.932814047443e-04, 2.0079e+00, 8.9427e-02, - 1DIAGNOSTIC, 20, -9.597845794512e-01, 2.913151832041e-04, 2.1010e+00, 9.3170e-02, - 1DIAGNOSTIC, 21, -9.593637984095e-01, 1.975200517261e-04, 2.1959e+00, 9.4858e-02, - 1DIAGNOSTIC, 22, -9.596117942238e-01, 1.251195272525e-04, 2.2916e+00, 9.5666e-02, - 1DIAGNOSTIC, 23, -9.592091343569e-01, 6.586755011677e-05, 2.3910e+00, 9.9476e-02, - 1DIAGNOSTIC, 24, -9.594375135310e-01, 2.718935292183e-05, 2.4939e+00, 1.0290e-01, - 1DIAGNOSTIC, 25, -9.590201138517e-01, -5.055727746381e-07, 2.5947e+00, 1.0073e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.298925236486e-01, 1.797693134862e+308, 3.4313e+00, 8.3663e-01, - 1DIAGNOSTIC, 2, -9.327425524128e-01, 1.797693134862e+308, 4.0909e+00, 6.5966e-01, - 1DIAGNOSTIC, 3, -9.355284712112e-01, 1.797693134862e+308, 4.7449e+00, 6.5393e-01, - 1DIAGNOSTIC, 4, -9.379958134164e-01, 1.797693134862e+308, 5.3858e+00, 6.4097e-01, - 1DIAGNOSTIC, 5, -9.403917363555e-01, 1.797693134862e+308, 6.0447e+00, 6.5882e-01, - 1DIAGNOSTIC, 6, -9.425062210042e-01, 1.797693134862e+308, 6.7075e+00, 6.6282e-01, - 1DIAGNOSTIC, 7, -9.442652683271e-01, 1.797693134862e+308, 7.3722e+00, 6.6476e-01, - 1DIAGNOSTIC, 8, -9.457301473495e-01, 1.797693134862e+308, 8.0328e+00, 6.6058e-01, - 1DIAGNOSTIC, 9, -9.468383816901e-01, 1.797693134862e+308, 8.6851e+00, 6.5224e-01, - 1DIAGNOSTIC, 10, -9.477805817977e-01, 1.231494104647e-03, 9.3225e+00, 6.3740e-01, - 1DIAGNOSTIC, 11, -9.485822645119e-01, 9.784599150042e-04, 9.9669e+00, 6.4447e-01, - 1DIAGNOSTIC, 12, -9.492643347872e-01, 7.680742536804e-04, 1.0637e+01, 6.7048e-01, - 1DIAGNOSTIC, 13, -9.498533397491e-01, 5.986252200372e-04, 1.1286e+01, 6.4874e-01, - 1DIAGNOSTIC, 14, -9.503553330634e-01, 4.625371553294e-04, 1.1954e+01, 6.6772e-01, - 1DIAGNOSTIC, 15, -9.507855125475e-01, 3.587764650723e-04, 1.2610e+01, 6.5646e-01, - 1DIAGNOSTIC, 16, -9.511449718708e-01, 2.813547046500e-04, 1.3278e+01, 6.6774e-01, - 1DIAGNOSTIC, 17, -9.514592905591e-01, 2.236227159930e-04, 1.3936e+01, 6.5825e-01, - 1DIAGNOSTIC, 18, -9.517341828546e-01, 1.806222393956e-04, 1.4601e+01, 6.6419e-01, - 1DIAGNOSTIC, 19, -9.519781233651e-01, 1.467451583536e-04, 1.5268e+01, 6.6712e-01, - 1DIAGNOSTIC, 20, -9.521852908807e-01, 1.198630959571e-04, 1.5910e+01, 6.4196e-01, - 1DIAGNOSTIC, 21, -9.523677727688e-01, 9.845927325389e-05, 1.6571e+01, 6.6160e-01, - 1DIAGNOSTIC, 22, -9.525253128588e-01, 8.128908733496e-05, 1.7234e+01, 6.6324e-01, - 1DIAGNOSTIC, 23, -9.526635755483e-01, 6.753134098109e-05, 1.7901e+01, 6.6624e-01, - 1DIAGNOSTIC, 24, -9.527916306385e-01, 5.651105082681e-05, 1.8556e+01, 6.5577e-01, - 1DIAGNOSTIC, 25, -9.528959712997e-01, 4.753574718994e-05, 1.9190e+01, 6.3367e-01, - 1DIAGNOSTIC, 26, -9.529867907474e-01, 4.003998742342e-05, 1.9857e+01, 6.6709e-01, - 1DIAGNOSTIC, 27, -9.530598906226e-01, 3.370032401170e-05, 2.0493e+01, 6.3570e-01, - 1DIAGNOSTIC, 28, -9.531282208647e-01, 2.838089735075e-05, 2.1133e+01, 6.4001e-01, - 1DIAGNOSTIC, 29, -9.531868292584e-01, 2.394704200147e-05, 2.1790e+01, 6.5710e-01, - 1DIAGNOSTIC, 30, -9.532357739899e-01, 2.017695634102e-05, 2.2440e+01, 6.4965e-01, - 1DIAGNOSTIC, 31, -9.532776045456e-01, 1.698701928490e-05, 2.3099e+01, 6.5905e-01, - 1DIAGNOSTIC, 32, -9.533112268853e-01, 1.425551822284e-05, 2.3764e+01, 6.6494e-01, - 1DIAGNOSTIC, 33, -9.533442929294e-01, 1.196857013630e-05, 2.4435e+01, 6.7145e-01, - 1DIAGNOSTIC, 34, -9.533730154383e-01, 1.013659621840e-05, 2.5076e+01, 6.4105e-01, - 1DIAGNOSTIC, 35, -9.533984492177e-01, 8.632363454556e-06, 2.5710e+01, 6.3427e-01, - 1DIAGNOSTIC, 36, -9.534200090886e-01, 7.403328756858e-06, 2.6357e+01, 6.4666e-01, - 1DIAGNOSTIC, 37, -9.534378064656e-01, 6.347470791413e-06, 2.7023e+01, 6.6582e-01, - 1DIAGNOSTIC, 38, -9.534528326815e-01, 5.473912170064e-06, 2.7686e+01, 6.6318e-01, - 1DIAGNOSTIC, 39, -9.534665884766e-01, 4.752328224510e-06, 2.8353e+01, 6.6690e-01, - 1DIAGNOSTIC, 40, -9.534828919859e-01, 4.174307824314e-06, 2.8994e+01, 6.4115e-01, - 1DIAGNOSTIC, 41, -9.534830883749e-01, 3.604388494841e-06, 2.9659e+01, 6.6501e-01, - 1DIAGNOSTIC, 42, -9.534913007341e-01, 3.088610908943e-06, 3.0316e+01, 6.5734e-01, - 1DIAGNOSTIC, 43, -9.534898323754e-01, 2.590928412430e-06, 3.0958e+01, 6.4153e-01, - 1DIAGNOSTIC, 44, -9.534975519213e-01, 2.184535665094e-06, 3.1621e+01, 6.6296e-01, - 1DIAGNOSTIC, 45, -9.534991913809e-01, 1.832870687283e-06, 3.2262e+01, 6.4143e-01, - 1DIAGNOSTIC, 46, -9.535023177999e-01, 1.548491478178e-06, 3.2913e+01, 6.5057e-01, - 1DIAGNOSTIC, 47, -9.535067916324e-01, 1.335754335193e-06, 3.3548e+01, 6.3494e-01, - 1DIAGNOSTIC, 48, -9.535087353238e-01, 1.172981841786e-06, 3.4213e+01, 6.6466e-01, - 1DIAGNOSTIC, 49, -9.535096327420e-01, 1.055152467445e-06, 3.4873e+01, 6.6064e-01, - 1DIAGNOSTIC, 50, -9.535047241275e-01, 9.719596472668e-07, 3.5531e+01, 6.5751e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.099217893291e-01, 1.797693134862e+308, 4.1115e+01, 5.5838e+00, - 1DIAGNOSTIC, 2, -9.127000556499e-01, 1.797693134862e+308, 4.6445e+01, 5.3307e+00, - 1DIAGNOSTIC, 3, -9.155704394463e-01, 1.797693134862e+308, 5.1798e+01, 5.3527e+00, - 1DIAGNOSTIC, 4, -9.180077232727e-01, 1.797693134862e+308, 5.7132e+01, 5.3339e+00, - 1DIAGNOSTIC, 5, -9.201222908435e-01, 1.797693134862e+308, 6.2484e+01, 5.3525e+00, - 1DIAGNOSTIC, 6, -9.220099384020e-01, 1.797693134862e+308, 6.7844e+01, 5.3592e+00, - 1DIAGNOSTIC, 7, -9.237060669213e-01, 1.797693134862e+308, 7.3191e+01, 5.3475e+00, - 1DIAGNOSTIC, 8, -9.252573301675e-01, 1.797693134862e+308, 7.8502e+01, 5.3106e+00, - 1DIAGNOSTIC, 9, -9.266475418784e-01, 1.797693134862e+308, 8.3847e+01, 5.3457e+00, - 1DIAGNOSTIC, 10, -9.279223050778e-01, 1.237345669605e-03, 8.9160e+01, 5.3126e+00, - 1DIAGNOSTIC, 11, -9.291192453450e-01, 1.011517998680e-03, 9.4511e+01, 5.3515e+00, - 1DIAGNOSTIC, 12, -9.301606159921e-01, 8.298923295716e-04, 9.9853e+01, 5.3418e+00, - 1DIAGNOSTIC, 13, -9.312434204622e-01, 6.943480723514e-04, 1.0518e+02, 5.3293e+00, - 1DIAGNOSTIC, 14, -9.321447168299e-01, 5.879661077965e-04, 1.1051e+02, 5.3289e+00, - 1DIAGNOSTIC, 15, -9.331084256858e-01, 5.048388083463e-04, 1.1588e+02, 5.3686e+00, - 1DIAGNOSTIC, 16, -9.337992195363e-01, 4.349786444084e-04, 1.2122e+02, 5.3414e+00, - 1DIAGNOSTIC, 17, -9.344499333787e-01, 3.754990725117e-04, 1.2660e+02, 5.3789e+00, - 1DIAGNOSTIC, 18, -9.350779913743e-01, 3.249324966756e-04, 1.3195e+02, 5.3471e+00, - 1DIAGNOSTIC, 19, -9.356919788608e-01, 2.817379950729e-04, 1.3730e+02, 5.3561e+00, - 1DIAGNOSTIC, 20, -9.363017458275e-01, 2.453930915902e-04, 1.4267e+02, 5.3640e+00, - 1DIAGNOSTIC, 21, -9.369066759938e-01, 2.158543554404e-04, 1.4808e+02, 5.4166e+00, - 1DIAGNOSTIC, 22, -9.374902196976e-01, 1.913675413288e-04, 1.5343e+02, 5.3504e+00, - 1DIAGNOSTIC, 23, -9.379849728199e-01, 1.720362421472e-04, 1.5880e+02, 5.3632e+00, - 1DIAGNOSTIC, 24, -9.384026817539e-01, 1.548963783164e-04, 1.6417e+02, 5.3722e+00, - 1DIAGNOSTIC, 25, -9.387664522228e-01, 1.408128225235e-04, 1.6953e+02, 5.3586e+00, - 1DIAGNOSTIC, 26, -9.390945729276e-01, 1.265358861638e-04, 1.7487e+02, 5.3370e+00, - 1DIAGNOSTIC, 27, -9.394090084790e-01, 1.123108176176e-04, 1.8024e+02, 5.3724e+00, - 1DIAGNOSTIC, 28, -9.397066194694e-01, 9.860982267136e-05, 1.8558e+02, 5.3381e+00, - 1DIAGNOSTIC, 29, -9.399983379083e-01, 8.609276457270e-05, 1.9092e+02, 5.3479e+00, - 1DIAGNOSTIC, 30, -9.402966402558e-01, 7.551792889008e-05, 1.9624e+02, 5.3190e+00, - 1DIAGNOSTIC, 31, -9.406055313543e-01, 6.746506448643e-05, 2.0159e+02, 5.3451e+00, - 1DIAGNOSTIC, 32, -9.409193100418e-01, 6.207607016496e-05, 2.0693e+02, 5.3380e+00, - 1DIAGNOSTIC, 33, -9.412257040971e-01, 5.853972582554e-05, 2.1230e+02, 5.3735e+00, - 1DIAGNOSTIC, 34, -9.415196761108e-01, 5.605707958049e-05, 2.1765e+02, 5.3479e+00, - 1DIAGNOSTIC, 35, -9.417995818099e-01, 5.402221922384e-05, 2.2300e+02, 5.3557e+00, - 1DIAGNOSTIC, 36, -9.420534025470e-01, 5.191456613104e-05, 2.2834e+02, 5.3369e+00, - 1DIAGNOSTIC, 37, -9.422814480828e-01, 4.947809849969e-05, 2.3371e+02, 5.3738e+00, - 1DIAGNOSTIC, 38, -9.424880203199e-01, 4.653531043636e-05, 2.3904e+02, 5.3282e+00, - 1DIAGNOSTIC, 39, -9.426768409727e-01, 4.309753473470e-05, 2.4442e+02, 5.3826e+00, - 1DIAGNOSTIC, 40, -9.428485774262e-01, 3.933411704444e-05, 2.4978e+02, 5.3570e+00, - 1DIAGNOSTIC, 41, -9.430074438186e-01, 3.550810541726e-05, 2.5515e+02, 5.3700e+00, - 1DIAGNOSTIC, 42, -9.431565758216e-01, 3.186402881574e-05, 2.6049e+02, 5.3362e+00, - 1DIAGNOSTIC, 43, -9.432922000937e-01, 2.850877637024e-05, 2.6591e+02, 5.4183e+00, - 1DIAGNOSTIC, 44, -9.434161735131e-01, 2.550644794489e-05, 2.7129e+02, 5.3794e+00, - 1DIAGNOSTIC, 45, -9.435312863294e-01, 2.290632234538e-05, 2.7663e+02, 5.3429e+00, - 1DIAGNOSTIC, 46, -9.436360529274e-01, 2.063782414104e-05, 2.8199e+02, 5.3609e+00, - 1DIAGNOSTIC, 47, -9.437359542613e-01, 1.865295403171e-05, 2.8737e+02, 5.3848e+00, - 1DIAGNOSTIC, 48, -9.438276533196e-01, 1.689529767956e-05, 2.9271e+02, 5.3358e+00, - 1DIAGNOSTIC, 49, -9.439145850374e-01, 1.534487975297e-05, 2.9807e+02, 5.3644e+00, - 1DIAGNOSTIC, 50, -9.439978760207e-01, 1.397983607628e-05, 3.0343e+02, 5.3590e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.132306797253e-01, 1.797693134862e+308, 3.4728e+02, 4.3844e+01, - 1DIAGNOSTIC, 2, -9.145816033665e-01, 1.797693134862e+308, 3.9067e+02, 4.3387e+01, - 1DIAGNOSTIC, 3, -9.161816222889e-01, 1.797693134862e+308, 4.3403e+02, 4.3363e+01, - 1DIAGNOSTIC, 4, -9.177514478801e-01, 1.797693134862e+308, 4.7738e+02, 4.3353e+01, - 1DIAGNOSTIC, 5, -9.192231661033e-01, 1.797693134862e+308, 5.2082e+02, 4.3437e+01, - 1DIAGNOSTIC, 6, -9.205711922146e-01, 1.797693134862e+308, 5.6423e+02, 4.3408e+01, - 1DIAGNOSTIC, 7, -9.218503412116e-01, 1.797693134862e+308, 6.0761e+02, 4.3380e+01, - 1DIAGNOSTIC, 8, -9.229513768156e-01, 1.797693134862e+308, 6.5094e+02, 4.3332e+01, - 1DIAGNOSTIC, 9, -9.239299607681e-01, 1.797693134862e+308, 6.9463e+02, 4.3691e+01, - 1DIAGNOSTIC, 10, -9.247951206383e-01, 8.259972594918e-04, 7.3804e+02, 4.3417e+01, - 1DIAGNOSTIC, 11, -9.254150118596e-01, 6.950777736593e-04, 7.8144e+02, 4.3395e+01, - 1DIAGNOSTIC, 12, -9.260285301100e-01, 5.739288216352e-04, 8.2477e+02, 4.3326e+01, - 1DIAGNOSTIC, 13, -9.265702514298e-01, 4.701116427464e-04, 8.6809e+02, 4.3328e+01, - 1DIAGNOSTIC, 14, -9.270709196646e-01, 3.837588064450e-04, 9.1150e+02, 4.3401e+01, - 1DIAGNOSTIC, 15, -9.275308468272e-01, 3.133794498769e-04, 9.5496e+02, 4.3466e+01, - 1DIAGNOSTIC, 16, -9.278707839362e-01, 2.554051875964e-04, 9.9841e+02, 4.3453e+01, - 1DIAGNOSTIC, 17, -9.282157111659e-01, 2.100990692352e-04, 1.0419e+03, 4.3522e+01, - 1DIAGNOSTIC, 18, -9.285548911354e-01, 1.749364949109e-04, 1.0854e+03, 4.3419e+01, - 1DIAGNOSTIC, 19, -9.288979939051e-01, 1.485507719290e-04, 1.1288e+03, 4.3398e+01, - 1DIAGNOSTIC, 20, -9.292228232570e-01, 1.292908430686e-04, 1.1724e+03, 4.3616e+01, - Elapsed time (stage 2): 1173 - - -Total elapsed time: 1224 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:58:55 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:58:55 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:58:58 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:03 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:06 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:06 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15504 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:07 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:10 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:10 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15555 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:10 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/anat/sub-PNC008_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:13 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:13 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15602 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:13 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 15611 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:14 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:18 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:20 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:21 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:22 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:24 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:24 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:25 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:26 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/surf/sub-PNC008_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:28 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:37 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:48 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01/sub-PNC008_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC008 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:48 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC008 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:48 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC008 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:48 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 16197 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:50 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc/sub-PNC008_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/xfm/sub-PNC008_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 16234 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:52 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:52 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC008_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 67.917 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/logs/proc_func_19-03-2024-26030.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 01:59:58 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC008 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-01/QC/sub-PNC008_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4904_micapipe_proc-func_sub-PNC008_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC008* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 67.950 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC008_ses-01 -========================reprocessing without filter=================== -sub-PNC008_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC008 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC008 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC008 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC008 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:00:03 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:00:03 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-1_bold.nii.gz is 40.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:02:05 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:04:10 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:04:24 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.00 (mm) at sub-brick 138 -++ Max delta displ in automask = 0.74 (mm) at sub-brick 95 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:17:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:17:26 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-2_bold.nii.gz is 40.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:19:33 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:21:40 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-02/func/sub-PNC008_ses-02_task-rest_echo-3_bold.nii.gz is 40.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:23:52 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.135 -3.411 3.167 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 68.8 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.120 -4.691 4.694 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 72.0 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:28:32 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:28:59 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55fc559a76f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [108.102, 62.9567, -114.401] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fc5581e730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55fc559be320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55fc559aafa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.8093, 124.379, -127.966] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fc559b0e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55fc561bb230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55fc561b95c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [108.102, 62.9567, -114.401] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fc559ad3f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55fc56ce5450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55fc561b7da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.8093, 124.379, -127.966] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55fc559b4360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55fc574df780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.030793046007e-01, 1.797693134862e+308, 4.0675e-02, 4.0675e-02, - 2DIAGNOSTIC, 2, -8.044087604646e-01, 1.797693134862e+308, 4.1800e-02, 1.1249e-03, - 2DIAGNOSTIC, 3, -8.049086997220e-01, 1.797693134862e+308, 4.2974e-02, 1.1740e-03, - 2DIAGNOSTIC, 4, -8.063578362269e-01, 1.797693134862e+308, 4.4147e-02, 1.1730e-03, - 2DIAGNOSTIC, 5, -8.117425858701e-01, 1.797693134862e+308, 4.5291e-02, 1.1439e-03, - 2DIAGNOSTIC, 6, -8.175064292180e-01, 1.797693134862e+308, 4.6677e-02, 1.3859e-03, - 2DIAGNOSTIC, 7, -8.207877781595e-01, 1.797693134862e+308, 4.8133e-02, 1.4560e-03, - 2DIAGNOSTIC, 8, -8.201542560574e-01, 1.797693134862e+308, 4.9566e-02, 1.4329e-03, - 2DIAGNOSTIC, 9, -8.211680867014e-01, 1.797693134862e+308, 5.0940e-02, 1.3740e-03, - 2DIAGNOSTIC, 10, -8.217913369012e-01, 1.811699631831e-03, 5.2253e-02, 1.3130e-03, - 2DIAGNOSTIC, 11, -8.224352117025e-01, 1.515091385620e-03, 5.3746e-02, 1.4930e-03, - 2DIAGNOSTIC, 12, -8.227928488042e-01, 1.182552864529e-03, 5.5027e-02, 1.2810e-03, - 2DIAGNOSTIC, 13, -8.225510190543e-01, 8.053334358632e-04, 5.6713e-02, 1.6861e-03, - 2DIAGNOSTIC, 14, -8.228485294728e-01, 4.523489393704e-04, 5.7999e-02, 1.2858e-03, - 2DIAGNOSTIC, 15, -8.231872116524e-01, 2.348938302565e-04, 5.9271e-02, 1.2722e-03, - 2DIAGNOSTIC, 16, -8.228634035677e-01, 1.394205462581e-04, 6.0569e-02, 1.2980e-03, - 2DIAGNOSTIC, 17, -8.241019805995e-01, 1.361220816847e-04, 6.2072e-02, 1.5032e-03, - 2DIAGNOSTIC, 18, -8.246358701288e-01, 1.180339018329e-04, 6.4503e-02, 2.4312e-03, - 2DIAGNOSTIC, 19, -8.249193790464e-01, 1.145393224270e-04, 6.6402e-02, 1.8990e-03, - 2DIAGNOSTIC, 20, -8.250184723519e-01, 1.133669419276e-04, 6.8784e-02, 2.3820e-03, - 2DIAGNOSTIC, 21, -8.250413555571e-01, 1.129296289680e-04, 7.0569e-02, 1.7850e-03, - 2DIAGNOSTIC, 22, -8.251303324779e-01, 1.091713554691e-04, 7.2070e-02, 1.5008e-03, - 2DIAGNOSTIC, 23, -8.252164918663e-01, 9.294015304748e-05, 7.3767e-02, 1.6971e-03, - 2DIAGNOSTIC, 24, -8.252290855419e-01, 7.395002763338e-05, 7.5208e-02, 1.4410e-03, - 2DIAGNOSTIC, 25, -8.252801566487e-01, 5.552465285311e-05, 7.6874e-02, 1.6661e-03, - 2DIAGNOSTIC, 26, -8.253093827635e-01, 2.915864021905e-05, 7.8463e-02, 1.5891e-03, - 2DIAGNOSTIC, 27, -8.254786799847e-01, 2.004095688714e-05, 8.0369e-02, 1.9059e-03, - 2DIAGNOSTIC, 28, -8.256151760094e-01, 1.794619064195e-05, 8.2845e-02, 2.4760e-03, - 2DIAGNOSTIC, 29, -8.256321730909e-01, 1.796085898924e-05, 8.4364e-02, 1.5190e-03, - 2DIAGNOSTIC, 30, -8.256900946932e-01, 1.824786208057e-05, 8.6109e-02, 1.7450e-03, - 2DIAGNOSTIC, 31, -8.257017620585e-01, 1.725532549616e-05, 8.7802e-02, 1.6930e-03, - 2DIAGNOSTIC, 32, -8.257029543390e-01, 1.571683230080e-05, 8.9257e-02, 1.4551e-03, - 2DIAGNOSTIC, 33, -8.257046893220e-01, 1.378545870031e-05, 9.0773e-02, 1.5159e-03, - 2DIAGNOSTIC, 34, -8.257103669320e-01, 1.094571815118e-05, 9.2218e-02, 1.4451e-03, - 2DIAGNOSTIC, 35, -8.257225942461e-01, 7.966275745602e-06, 9.3859e-02, 1.6410e-03, - 2DIAGNOSTIC, 36, -8.257309977772e-01, 4.809574397874e-06, 9.6237e-02, 2.3780e-03, - 2DIAGNOSTIC, 37, -8.257363540487e-01, 3.057470476433e-06, 9.7702e-02, 1.4651e-03, - 2DIAGNOSTIC, 38, -8.257397284363e-01, 2.466674451536e-06, 9.9141e-02, 1.4391e-03, - 2DIAGNOSTIC, 39, -8.257443003703e-01, 1.928971899951e-06, 1.0082e-01, 1.6739e-03, - 2DIAGNOSTIC, 40, -8.257463105810e-01, 1.825763203393e-06, 1.0245e-01, 1.6310e-03, - 2DIAGNOSTIC, 41, -8.257478071227e-01, 1.739995554438e-06, 1.0409e-01, 1.6429e-03, - 2DIAGNOSTIC, 42, -8.267410221867e-01, 9.752012624528e-06, 1.0602e-01, 1.9338e-03, - 2DIAGNOSTIC, 43, -8.267442064787e-01, 1.634232478937e-05, 1.1156e-01, 5.5380e-03, - 2DIAGNOSTIC, 44, -8.267442064704e-01, 2.127653125641e-05, 1.1713e-01, 5.5709e-03, - 2DIAGNOSTIC, 45, -8.267442064704e-01, 2.424224286070e-05, 1.1882e-01, 1.6880e-03, - 2DIAGNOSTIC, 46, -8.267442064704e-01, 2.486175106990e-05, 1.2070e-01, 1.8849e-03, - 2DIAGNOSTIC, 47, -8.267442064704e-01, 2.305749785516e-05, 1.2235e-01, 1.6470e-03, - 2DIAGNOSTIC, 48, -8.267442064704e-01, 1.918219213189e-05, 1.2422e-01, 1.8690e-03, - 2DIAGNOSTIC, 49, -8.267442064704e-01, 1.383785065109e-05, 1.2612e-01, 1.9011e-03, - 2DIAGNOSTIC, 50, -8.267442064704e-01, 7.541126949374e-06, 1.2783e-01, 1.7109e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.402859423864e-01, 1.797693134862e+308, 1.7564e-01, 4.7805e-02, - 2DIAGNOSTIC, 2, -4.406361843670e-01, 1.797693134862e+308, 1.7824e-01, 2.6019e-03, - 2DIAGNOSTIC, 3, -4.416822113705e-01, 1.797693134862e+308, 1.8074e-01, 2.5039e-03, - 2DIAGNOSTIC, 4, -4.422465089487e-01, 1.797693134862e+308, 1.8318e-01, 2.4409e-03, - 2DIAGNOSTIC, 5, -4.426464531516e-01, 1.797693134862e+308, 1.8535e-01, 2.1682e-03, - 2DIAGNOSTIC, 6, -4.432369881618e-01, 1.797693134862e+308, 1.8770e-01, 2.3441e-03, - 2DIAGNOSTIC, 7, -4.437820035236e-01, 1.797693134862e+308, 1.9062e-01, 2.9230e-03, - 2DIAGNOSTIC, 8, -4.439226014675e-01, 1.797693134862e+308, 1.9323e-01, 2.6121e-03, - 2DIAGNOSTIC, 9, -4.439092919657e-01, 1.797693134862e+308, 1.9520e-01, 1.9720e-03, - 2DIAGNOSTIC, 10, -4.439173064014e-01, 5.732482953703e-04, 1.9739e-01, 2.1832e-03, - 2DIAGNOSTIC, 11, -4.439080241457e-01, 4.159299191673e-04, 1.9959e-01, 2.2001e-03, - 2DIAGNOSTIC, 12, -4.439055932090e-01, 2.649479951207e-04, 2.0177e-01, 2.1801e-03, - 2DIAGNOSTIC, 13, -4.439347405336e-01, 1.663398327244e-04, 2.0398e-01, 2.2101e-03, - 2DIAGNOSTIC, 14, -4.441275612506e-01, 1.018035868959e-04, 2.0618e-01, 2.2049e-03, - 2DIAGNOSTIC, 15, -4.451987536445e-01, 9.912940006787e-05, 2.0954e-01, 3.3550e-03, - 2DIAGNOSTIC, 16, -4.457208734592e-01, 1.307966193958e-04, 2.1170e-01, 2.1620e-03, - 2DIAGNOSTIC, 17, -4.466650983421e-01, 2.028701142774e-04, 2.1419e-01, 2.4889e-03, - 2DIAGNOSTIC, 18, -4.479059438464e-01, 2.972873713752e-04, 2.1700e-01, 2.8110e-03, - 2DIAGNOSTIC, 19, -4.492500023013e-01, 3.982900540560e-04, 2.1915e-01, 2.1510e-03, - 2DIAGNOSTIC, 20, -4.494503945540e-01, 4.580024912020e-04, 2.2160e-01, 2.4540e-03, - 2DIAGNOSTIC, 21, -4.497683280472e-01, 4.793953330495e-04, 2.2492e-01, 3.3181e-03, - 2DIAGNOSTIC, 22, -4.498403097101e-01, 4.565817850835e-04, 2.2709e-01, 2.1670e-03, - 2DIAGNOSTIC, 23, -4.501362532300e-01, 4.019879902243e-04, 2.2923e-01, 2.1420e-03, - 2DIAGNOSTIC, 24, -4.503396642682e-01, 3.239407827392e-04, 2.3137e-01, 2.1420e-03, - 2DIAGNOSTIC, 25, -4.503966333571e-01, 2.508672663743e-04, 2.3380e-01, 2.4312e-03, - 2DIAGNOSTIC, 26, -4.504081214160e-01, 1.733209941312e-04, 2.3597e-01, 2.1629e-03, - 2DIAGNOSTIC, 27, -4.504202712117e-01, 1.075782112564e-04, 2.3901e-01, 3.0401e-03, - 2DIAGNOSTIC, 28, -4.504444611492e-01, 6.451197942577e-05, 2.4147e-01, 2.4631e-03, - 2DIAGNOSTIC, 29, -4.504493756101e-01, 4.796530817591e-05, 2.4364e-01, 2.1660e-03, - 2DIAGNOSTIC, 30, -4.504416394357e-01, 3.208954814889e-05, 2.4583e-01, 2.1951e-03, - 2DIAGNOSTIC, 31, -4.504688072375e-01, 2.150241579060e-05, 2.4853e-01, 2.7030e-03, - 2DIAGNOSTIC, 32, -4.504711849688e-01, 1.099880562862e-05, 2.5096e-01, 2.4211e-03, - 2DIAGNOSTIC, 33, -4.504910048565e-01, 6.175366409608e-06, 2.5339e-01, 2.4321e-03, - 2DIAGNOSTIC, 34, -4.504976878032e-01, 5.046081154793e-06, 2.5582e-01, 2.4281e-03, - 2DIAGNOSTIC, 35, -4.505110891209e-01, 4.876324059794e-06, 2.5795e-01, 2.1310e-03, - 2DIAGNOSTIC, 36, -4.505207599455e-01, 4.706280697053e-06, 2.6040e-01, 2.4500e-03, - 2DIAGNOSTIC, 37, -4.505229959690e-01, 4.412679292090e-06, 2.6283e-01, 2.4309e-03, - 2DIAGNOSTIC, 38, -4.505239451262e-01, 4.219273182383e-06, 2.6527e-01, 2.4381e-03, - 2DIAGNOSTIC, 39, -4.505252410108e-01, 3.823630454990e-06, 2.6771e-01, 2.4400e-03, - 2DIAGNOSTIC, 40, -4.505253425106e-01, 3.029213666076e-06, 2.7042e-01, 2.7120e-03, - 2DIAGNOSTIC, 41, -4.505254304446e-01, 2.484810022772e-06, 2.7256e-01, 2.1460e-03, - 2DIAGNOSTIC, 42, -4.505256567495e-01, 1.838293598157e-06, 2.7539e-01, 2.8288e-03, - 2DIAGNOSTIC, 43, -4.505256800574e-01, 1.413712581798e-06, 2.7792e-01, 2.5239e-03, - 2DIAGNOSTIC, 44, -4.505256840952e-01, 1.037439673928e-06, 2.8041e-01, 2.4941e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.252473952369e-01, 1.797693134862e+308, 3.4802e-01, 6.7605e-02, - 2DIAGNOSTIC, 2, -3.256635904570e-01, 1.797693134862e+308, 3.5855e-01, 1.0531e-02, - 2DIAGNOSTIC, 3, -3.262722607084e-01, 1.797693134862e+308, 3.6913e-01, 1.0586e-02, - 2DIAGNOSTIC, 4, -3.274202618051e-01, 1.797693134862e+308, 3.8041e-01, 1.1281e-02, - 2DIAGNOSTIC, 5, -3.289569720145e-01, 1.797693134862e+308, 3.9213e-01, 1.1713e-02, - 2DIAGNOSTIC, 6, -3.342620233964e-01, 1.797693134862e+308, 4.0375e-01, 1.1620e-02, - 2DIAGNOSTIC, 7, -3.394959314029e-01, 1.797693134862e+308, 4.1549e-01, 1.1748e-02, - 2DIAGNOSTIC, 8, -3.463591462124e-01, 1.797693134862e+308, 4.2725e-01, 1.1759e-02, - 2DIAGNOSTIC, 9, -3.536269535087e-01, 1.797693134862e+308, 4.4023e-01, 1.2979e-02, - 2DIAGNOSTIC, 10, -3.550735980808e-01, 6.331874372975e-03, 4.5518e-01, 1.4948e-02, - 2DIAGNOSTIC, 11, -3.562784712598e-01, 6.359067100336e-03, 4.6801e-01, 1.2828e-02, - 2DIAGNOSTIC, 12, -3.647363812402e-01, 6.418948725836e-03, 4.7903e-01, 1.1017e-02, - 2DIAGNOSTIC, 13, -3.816743258607e-01, 6.968608334463e-03, 4.9030e-01, 1.1270e-02, - 2DIAGNOSTIC, 14, -3.974007054284e-01, 7.744188875808e-03, 5.0055e-01, 1.0253e-02, - 2DIAGNOSTIC, 15, -4.436428503392e-01, 1.018690579139e-02, 5.1696e-01, 1.6415e-02, - 2DIAGNOSTIC, 16, -4.716735278595e-01, 1.287562177946e-02, 5.2765e-01, 1.0690e-02, - 2DIAGNOSTIC, 17, -4.783915514745e-01, 1.450929737252e-02, 5.4009e-01, 1.2438e-02, - 2DIAGNOSTIC, 18, -4.936984912099e-01, 1.550783394411e-02, 5.5652e-01, 1.6424e-02, - 2DIAGNOSTIC, 19, -5.011546900557e-01, 1.550722405666e-02, 5.6705e-01, 1.0539e-02, - 2DIAGNOSTIC, 20, -5.149628274205e-01, 1.460227187898e-02, 5.8013e-01, 1.3080e-02, - 2DIAGNOSTIC, 21, -5.211832033471e-01, 1.269837105358e-02, 5.9133e-01, 1.1198e-02, - 2DIAGNOSTIC, 22, -5.215934498418e-01, 1.014643214261e-02, 6.0575e-01, 1.4415e-02, - 2DIAGNOSTIC, 23, -5.216774435886e-01, 7.477892591949e-03, 6.1612e-01, 1.0368e-02, - 2DIAGNOSTIC, 24, -5.219238552322e-01, 4.830916378482e-03, 6.2771e-01, 1.1599e-02, - 2DIAGNOSTIC, 25, -5.220110020753e-01, 3.250124365451e-03, 6.4090e-01, 1.3181e-02, - 2DIAGNOSTIC, 26, -5.220429847889e-01, 2.249090786729e-03, 6.5371e-01, 1.2817e-02, - 2DIAGNOSTIC, 27, -5.220205729726e-01, 1.292711757874e-03, 6.6485e-01, 1.1141e-02, - 2DIAGNOSTIC, 28, -5.220050301635e-01, 6.643981024882e-04, 6.7461e-01, 9.7532e-03, - 2DIAGNOSTIC, 29, -5.219980691304e-01, 1.892045964012e-04, 6.8478e-01, 1.0172e-02, - 2DIAGNOSTIC, 30, -5.219999196675e-01, 3.303125229832e-05, 6.9457e-01, 9.7871e-03, - 2DIAGNOSTIC, 31, -5.219946430946e-01, 1.655908415678e-05, 7.0661e-01, 1.2048e-02, - 2DIAGNOSTIC, 32, -5.220063186429e-01, 8.464846413744e-06, 7.1692e-01, 1.0310e-02, - 2DIAGNOSTIC, 33, -5.220129833624e-01, 1.928300550770e-06, 7.2836e-01, 1.1440e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.396368072690e-01, 1.797693134862e+308, 9.3174e-01, 2.0338e-01, - Elapsed time (stage 0): 9.5837e-01 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.704145690970e-01, 1.797693134862e+308, 3.9203e-02, 3.9202e-02, - 2DIAGNOSTIC, 2, -9.719536698543e-01, 1.797693134862e+308, 4.0493e-02, 1.2901e-03, - 2DIAGNOSTIC, 3, -9.752234424306e-01, 1.797693134862e+308, 4.1816e-02, 1.3230e-03, - 2DIAGNOSTIC, 4, -9.822027412191e-01, 1.797693134862e+308, 4.3167e-02, 1.3511e-03, - 2DIAGNOSTIC, 5, -9.928098720067e-01, 1.797693134862e+308, 4.4538e-02, 1.3711e-03, - 2DIAGNOSTIC, 6, -1.017759679063e+00, 1.797693134862e+308, 4.6106e-02, 1.5681e-03, - 2DIAGNOSTIC, 7, -1.025193932032e+00, 1.797693134862e+308, 4.8192e-02, 2.0852e-03, - 2DIAGNOSTIC, 8, -1.027190926020e+00, 1.797693134862e+308, 4.9730e-02, 1.5380e-03, - 2DIAGNOSTIC, 9, -1.030370515457e+00, 1.797693134862e+308, 5.1091e-02, 1.3618e-03, - 2DIAGNOSTIC, 10, -1.031878801558e+00, 4.912798769340e-03, 5.2616e-02, 1.5249e-03, - 2DIAGNOSTIC, 11, -1.034175715947e+00, 4.187084547065e-03, 5.4536e-02, 1.9200e-03, - 2DIAGNOSTIC, 12, -1.037903716286e+00, 3.332585463915e-03, 5.6243e-02, 1.7071e-03, - 2DIAGNOSTIC, 13, -1.042318725835e+00, 2.483068993484e-03, 5.8617e-02, 2.3739e-03, - 2DIAGNOSTIC, 14, -1.042257973716e+00, 1.672426730380e-03, 6.0087e-02, 1.4701e-03, - 2DIAGNOSTIC, 15, -1.042956288520e+00, 1.021837083193e-03, 6.1592e-02, 1.5049e-03, - 2DIAGNOSTIC, 16, -1.045764000688e+00, 8.436052002383e-04, 6.3085e-02, 1.4930e-03, - 2DIAGNOSTIC, 17, -1.047883374549e+00, 7.637139788311e-04, 6.4789e-02, 1.7040e-03, - 2DIAGNOSTIC, 18, -1.051024614862e+00, 6.999124728194e-04, 6.6999e-02, 2.2101e-03, - 2DIAGNOSTIC, 19, -1.050656210399e+00, 6.197049681334e-04, 6.8472e-02, 1.4729e-03, - 2DIAGNOSTIC, 20, -1.050965107532e+00, 5.171595661490e-04, 7.0194e-02, 1.7219e-03, - 2DIAGNOSTIC, 21, -1.051826405021e+00, 4.173677793929e-04, 7.1687e-02, 1.4930e-03, - 2DIAGNOSTIC, 22, -1.051149550526e+00, 3.239901968215e-04, 7.3397e-02, 1.7099e-03, - 2DIAGNOSTIC, 23, -1.051637831101e+00, 2.681352601507e-04, 7.5108e-02, 1.7111e-03, - 2DIAGNOSTIC, 24, -1.050857274989e+00, 1.827666702016e-04, 7.6615e-02, 1.5070e-03, - 2DIAGNOSTIC, 25, -1.050068963797e+00, 8.643117760651e-05, 7.8093e-02, 1.4780e-03, - 2DIAGNOSTIC, 26, -1.050776645394e+00, 2.674042198682e-05, 7.9805e-02, 1.7121e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.998416058376e-01, 1.797693134862e+308, 1.2369e-01, 4.3888e-02, - 2DIAGNOSTIC, 2, -6.992832343874e-01, 1.797693134862e+308, 1.2655e-01, 2.8539e-03, - 2DIAGNOSTIC, 3, -7.013270197516e-01, 1.797693134862e+308, 1.2939e-01, 2.8422e-03, - 2DIAGNOSTIC, 4, -7.047020092938e-01, 1.797693134862e+308, 1.3201e-01, 2.6181e-03, - 2DIAGNOSTIC, 5, -7.096042984911e-01, 1.797693134862e+308, 1.3439e-01, 2.3799e-03, - 2DIAGNOSTIC, 6, -7.178594349499e-01, 1.797693134862e+308, 1.3674e-01, 2.3570e-03, - 2DIAGNOSTIC, 7, -7.272344146767e-01, 1.797693134862e+308, 1.3942e-01, 2.6731e-03, - 2DIAGNOSTIC, 8, -7.406593827025e-01, 1.797693134862e+308, 1.4378e-01, 4.3612e-03, - 2DIAGNOSTIC, 9, -7.397777107700e-01, 1.797693134862e+308, 1.4603e-01, 2.2511e-03, - 2DIAGNOSTIC, 10, -7.408016193253e-01, 4.587711047227e-03, 1.4854e-01, 2.5120e-03, - 2DIAGNOSTIC, 11, -7.427776131944e-01, 4.258702051589e-03, 1.5114e-01, 2.6011e-03, - 2DIAGNOSTIC, 12, -7.454335636513e-01, 3.665403740875e-03, 1.5353e-01, 2.3911e-03, - 2DIAGNOSTIC, 13, -7.505963060127e-01, 3.046088482610e-03, 1.5594e-01, 2.4042e-03, - 2DIAGNOSTIC, 14, -7.537951367970e-01, 2.425076824976e-03, 1.5833e-01, 2.3961e-03, - 2DIAGNOSTIC, 15, -7.606773402522e-01, 1.976641432271e-03, 1.6251e-01, 4.1780e-03, - 2DIAGNOSTIC, 16, -7.640910169700e-01, 1.683151990934e-03, 1.6697e-01, 4.4570e-03, - 2DIAGNOSTIC, 17, -7.640611452326e-01, 1.474992851687e-03, 1.6950e-01, 2.5339e-03, - 2DIAGNOSTIC, 18, -7.647497837478e-01, 1.460783003796e-03, 1.7212e-01, 2.6212e-03, - 2DIAGNOSTIC, 19, -7.656148184203e-01, 1.312272631315e-03, 1.7474e-01, 2.6159e-03, - 2DIAGNOSTIC, 20, -7.663929276784e-01, 1.090381041756e-03, 1.7750e-01, 2.7609e-03, - 2DIAGNOSTIC, 21, -7.673110763989e-01, 8.412511332143e-04, 1.8036e-01, 2.8601e-03, - 2DIAGNOSTIC, 22, -7.686345900885e-01, 6.064211210620e-04, 1.8344e-01, 3.0789e-03, - 2DIAGNOSTIC, 23, -7.691472043548e-01, 4.310558228852e-04, 1.8622e-01, 2.7821e-03, - 2DIAGNOSTIC, 24, -7.692736542840e-01, 2.810394474210e-04, 1.8904e-01, 2.8131e-03, - 2DIAGNOSTIC, 25, -7.693184417736e-01, 2.217696495753e-04, 1.9181e-01, 2.7730e-03, - 2DIAGNOSTIC, 26, -7.693393846591e-01, 1.970131751072e-04, 1.9425e-01, 2.4431e-03, - 2DIAGNOSTIC, 27, -7.694041719944e-01, 1.559089896925e-04, 1.9700e-01, 2.7449e-03, - 2DIAGNOSTIC, 28, -7.695262009936e-01, 1.140626612591e-04, 1.9976e-01, 2.7640e-03, - 2DIAGNOSTIC, 29, -7.695272571481e-01, 7.593881629790e-05, 2.0228e-01, 2.5148e-03, - 2DIAGNOSTIC, 30, -7.695778079599e-01, 4.384165789882e-05, 2.0507e-01, 2.7928e-03, - 2DIAGNOSTIC, 31, -7.697131262108e-01, 2.235685286113e-05, 2.0790e-01, 2.8269e-03, - 2DIAGNOSTIC, 32, -7.696754721186e-01, 1.526248707329e-05, 2.1068e-01, 2.7840e-03, - 2DIAGNOSTIC, 33, -7.696351532227e-01, 1.266343985443e-05, 2.1344e-01, 2.7580e-03, - 2DIAGNOSTIC, 34, -7.696083313365e-01, 1.024792942190e-05, 2.1619e-01, 2.7540e-03, - 2DIAGNOSTIC, 35, -7.695324304478e-01, 6.760699885960e-06, 2.1870e-01, 2.5039e-03, - 2DIAGNOSTIC, 36, -7.696507725390e-01, 4.364269552616e-06, 2.2120e-01, 2.5022e-03, - 2DIAGNOSTIC, 37, -7.698436350937e-01, 4.328956439745e-06, 2.2368e-01, 2.4788e-03, - 2DIAGNOSTIC, 38, -7.702181734990e-01, 8.884117487215e-06, 2.2618e-01, 2.4998e-03, - 2DIAGNOSTIC, 39, -7.708299421689e-01, 1.830560446407e-05, 2.2870e-01, 2.5289e-03, - 2DIAGNOSTIC, 40, -7.740545036929e-01, 5.631484579762e-05, 2.3251e-01, 3.8071e-03, - 2DIAGNOSTIC, 41, -7.749637806864e-01, 9.598032042306e-05, 2.3546e-01, 2.9521e-03, - 2DIAGNOSTIC, 42, -7.747640376005e-01, 1.226512821554e-04, 2.3873e-01, 3.2701e-03, - 2DIAGNOSTIC, 43, -7.756783031290e-01, 1.445959721221e-04, 2.4133e-01, 2.5990e-03, - 2DIAGNOSTIC, 44, -7.763040514106e-01, 1.566275321208e-04, 2.4465e-01, 3.3140e-03, - 2DIAGNOSTIC, 45, -7.770161072019e-01, 1.579747530244e-04, 2.4839e-01, 3.7429e-03, - 2DIAGNOSTIC, 46, -7.772736940162e-01, 1.471641162939e-04, 2.5092e-01, 2.5258e-03, - 2DIAGNOSTIC, 47, -7.778124678910e-01, 1.291106072041e-04, 2.5378e-01, 2.8670e-03, - 2DIAGNOSTIC, 48, -7.779808686511e-01, 1.039240295801e-04, 2.5659e-01, 2.8079e-03, - 2DIAGNOSTIC, 49, -7.779726236688e-01, 7.379198226329e-05, 2.5945e-01, 2.8598e-03, - 2DIAGNOSTIC, 50, -7.779575668195e-01, 6.181109851420e-05, 2.6201e-01, 2.5640e-03, - 2DIAGNOSTIC, 51, -7.779432018300e-01, 5.117645909549e-05, 2.6481e-01, 2.7940e-03, - 2DIAGNOSTIC, 52, -7.779887014957e-01, 3.487745238709e-05, 2.6765e-01, 2.8369e-03, - 2DIAGNOSTIC, 53, -7.777310622271e-01, 2.047646117273e-05, 2.7019e-01, 2.5411e-03, - 2DIAGNOSTIC, 54, -7.778265020279e-01, 9.701804285972e-06, 2.7302e-01, 2.8319e-03, - 2DIAGNOSTIC, 55, -7.779135415792e-01, 3.866852887949e-06, 2.7590e-01, 2.8801e-03, - 2DIAGNOSTIC, 56, -7.781809197987e-01, 1.307238110673e-06, 2.7999e-01, 4.0879e-03, - 2DIAGNOSTIC, 57, -7.781274234525e-01, 1.884828242895e-06, 2.8250e-01, 2.5141e-03, - 2DIAGNOSTIC, 58, -7.780935808916e-01, 3.245215703565e-06, 2.8506e-01, 2.5630e-03, - 2DIAGNOSTIC, 59, -7.781024724913e-01, 4.334346261826e-06, 2.8758e-01, 2.5191e-03, - 2DIAGNOSTIC, 60, -7.781145363515e-01, 4.956677118018e-06, 2.9015e-01, 2.5640e-03, - 2DIAGNOSTIC, 61, -7.781365229606e-01, 5.129510252475e-06, 2.9269e-01, 2.5411e-03, - 2DIAGNOSTIC, 62, -7.783007950199e-01, 6.173941185385e-06, 2.9623e-01, 3.5470e-03, - 2DIAGNOSTIC, 63, -7.784383060116e-01, 5.925125843239e-06, 3.0057e-01, 4.3399e-03, - 2DIAGNOSTIC, 64, -7.783732455099e-01, 5.329902440756e-06, 3.0305e-01, 2.4719e-03, - 2DIAGNOSTIC, 65, -7.783834514953e-01, 4.829194696486e-06, 3.0551e-01, 2.4590e-03, - 2DIAGNOSTIC, 66, -7.783964875220e-01, 5.517077635110e-06, 3.0797e-01, 2.4612e-03, - 2DIAGNOSTIC, 67, -7.784113915769e-01, 5.466560406168e-06, 3.1041e-01, 2.4388e-03, - 2DIAGNOSTIC, 68, -7.784275925006e-01, 4.827009191508e-06, 3.1286e-01, 2.4562e-03, - 2DIAGNOSTIC, 69, -7.784479363955e-01, 3.961311018395e-06, 3.1534e-01, 2.4810e-03, - 2DIAGNOSTIC, 70, -7.785445924014e-01, 3.380411164869e-06, 3.1809e-01, 2.7509e-03, - 2DIAGNOSTIC, 71, -7.785823658858e-01, 2.812890442660e-06, 3.2178e-01, 3.6891e-03, - 2DIAGNOSTIC, 72, -7.784711097129e-01, 2.284685472184e-06, 3.2452e-01, 2.7359e-03, - 2DIAGNOSTIC, 73, -7.784840223422e-01, 2.395810592595e-06, 3.2687e-01, 2.3549e-03, - 2DIAGNOSTIC, 74, -7.784347694484e-01, 1.732732169279e-06, 3.2945e-01, 2.5799e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.786605107096e-01, 1.797693134862e+308, 3.9407e-01, 6.4614e-02, - 2DIAGNOSTIC, 2, -5.790951610258e-01, 1.797693134862e+308, 4.0524e-01, 1.1176e-02, - 2DIAGNOSTIC, 3, -5.796656963298e-01, 1.797693134862e+308, 4.1706e-01, 1.1821e-02, - 2DIAGNOSTIC, 4, -5.802474430468e-01, 1.797693134862e+308, 4.2959e-01, 1.2522e-02, - 2DIAGNOSTIC, 5, -5.807206950664e-01, 1.797693134862e+308, 4.4069e-01, 1.1101e-02, - 2DIAGNOSTIC, 6, -5.811620030323e-01, 1.797693134862e+308, 4.5195e-01, 1.1267e-02, - 2DIAGNOSTIC, 7, -5.817666449353e-01, 1.797693134862e+308, 4.6475e-01, 1.2795e-02, - 2DIAGNOSTIC, 8, -5.831882705909e-01, 1.797693134862e+308, 4.8359e-01, 1.8843e-02, - 2DIAGNOSTIC, 9, -5.833112984353e-01, 1.797693134862e+308, 4.9699e-01, 1.3400e-02, - 2DIAGNOSTIC, 10, -5.834686239255e-01, 5.776810170512e-04, 5.0970e-01, 1.2706e-02, - 2DIAGNOSTIC, 11, -5.839506166590e-01, 5.175498400807e-04, 5.2184e-01, 1.2145e-02, - 2DIAGNOSTIC, 12, -5.845467337166e-01, 4.621178937324e-04, 5.3455e-01, 1.2711e-02, - 2DIAGNOSTIC, 13, -5.850244494624e-01, 4.116712011046e-04, 5.4663e-01, 1.2076e-02, - 2DIAGNOSTIC, 14, -5.856782665640e-01, 3.741946405018e-04, 5.6008e-01, 1.3445e-02, - 2DIAGNOSTIC, 15, -5.858318359684e-01, 3.285037519424e-04, 5.7546e-01, 1.5389e-02, - 2DIAGNOSTIC, 16, -5.858804933977e-01, 2.736383567371e-04, 5.9027e-01, 1.4810e-02, - 2DIAGNOSTIC, 17, -5.858890247965e-01, 2.167240938572e-04, 6.0380e-01, 1.3523e-02, - 2DIAGNOSTIC, 18, -5.858764922770e-01, 1.843864809018e-04, 6.1742e-01, 1.3620e-02, - 2DIAGNOSTIC, 19, -5.858799450465e-01, 1.417666534630e-04, 6.3237e-01, 1.4949e-02, - 2DIAGNOSTIC, 20, -5.858788551512e-01, 9.411788672478e-05, 6.4737e-01, 1.5001e-02, - 2DIAGNOSTIC, 21, -5.858764228948e-01, 5.348213074207e-05, 6.6085e-01, 1.3479e-02, - 2DIAGNOSTIC, 22, -5.858704657152e-01, 2.469344014987e-05, 6.7422e-01, 1.3376e-02, - 2DIAGNOSTIC, 23, -5.858675975752e-01, 5.962581126402e-06, 6.8574e-01, 1.1519e-02, - 2DIAGNOSTIC, 24, -5.858650725754e-01, 1.507329914698e-06, 6.9966e-01, 1.3921e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.840278233806e-01, 1.797693134862e+308, 9.2198e-01, 2.2231e-01, - Elapsed time (stage 1): 9.4521e-01 - - -Total elapsed time: 1.9047e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:29:03 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 52 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 74 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 90.62% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 90.62% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[ 9552 5710 1825 5649 12969 2195 10265 1342 5991 1776 6133 2513 - 333 8157 4669 9871 8731 1293 478 2034 537 319 729 972 - 663 3815 472 636 1227 332 219 0 689 0 0 477 - 0 0 0 0 0 268 0 0 0 180 0 0 - 0 0 0 0] -[109567 51534 34418 37177 58444 36847 72898 16652 31627 24501 - 17418 15016 13389 19184 16420 15723 16143 13441 16589 14802 - 4888 11082 3958 10696 12135 9694 7794 8508 2264 2414 - 7571 1893 5949 2353 1569 3859 1528 2625 2343 1864 - 1472 2023 1531 1017 1237 938 1361 734 1862 502 - 986 700] -[ 156 1008 391 544 8042 1915 195 474 0 1629 0 751 - 259 166 471 177 13198 8443 0 157 398 0 24351 0 - 1276 0 0 0 182 1224 272 4781 0 2005 0 190 - 283 3086 22022 1005 0 170 0 893 1427 1044 0 0 - 352 8801 8844 244] -[ 7147 7833 13131 16570 4481 62657 10659 7053 8366 36915 4571 1576 - 14721 2797 10964 6236 3293 1223 1549 2485 7014 1059 3392 6186 - 4406 1861 1930 2755 9049 18798 8395 1240 1907 2833 1827 7714 - 8717 56804 467 12854 11740 13917 16770 12058 21768 15251 1105 1753 - 4806 95934 12469 8965] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:39:33 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:39:38 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:21 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:21 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:22 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:32 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:43:35 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC008 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:44:42 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:45:07 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:48:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:48:09 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:49:27 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:49:27 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55f1f1fead20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [76.2585, 124.828, -128.415] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f1f1e61730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe4270f6010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55f1f1fee020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 63.4059, -114.851] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f1f1ff40c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe423a37010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55f1f2004840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [76.2585, 124.828, -128.415] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f1f1ff0890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe41ed63010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55f1f20083e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 63.4059, -114.851] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f1f1ff7130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe41b6a4010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.986998613173e-01, 1.797693134862e+308, 2.3704e-01, 2.3704e-01, - 2DIAGNOSTIC, 2, -5.005378353914e-01, 1.797693134862e+308, 2.3834e-01, 1.2991e-03, - 2DIAGNOSTIC, 3, -5.032588536127e-01, 1.797693134862e+308, 2.3972e-01, 1.3790e-03, - 2DIAGNOSTIC, 4, -5.080878994833e-01, 1.797693134862e+308, 2.4098e-01, 1.2598e-03, - 2DIAGNOSTIC, 5, -5.151865110675e-01, 1.797693134862e+308, 2.4223e-01, 1.2469e-03, - 2DIAGNOSTIC, 6, -5.246385470748e-01, 1.797693134862e+308, 2.4389e-01, 1.6601e-03, - 2DIAGNOSTIC, 7, -5.356382533998e-01, 1.797693134862e+308, 2.4551e-01, 1.6220e-03, - 2DIAGNOSTIC, 8, -5.388319282423e-01, 1.797693134862e+308, 2.4689e-01, 1.3752e-03, - 2DIAGNOSTIC, 9, -5.506169506957e-01, 1.797693134862e+308, 2.4832e-01, 1.4310e-03, - 2DIAGNOSTIC, 10, -5.630517103453e-01, 8.005554489543e-03, 2.4997e-01, 1.6570e-03, - 2DIAGNOSTIC, 11, -5.897192229634e-01, 8.981942439936e-03, 2.5257e-01, 2.5928e-03, - 2DIAGNOSTIC, 12, -5.937848689858e-01, 9.212216656921e-03, 2.5437e-01, 1.8079e-03, - 2DIAGNOSTIC, 13, -5.944015207750e-01, 8.728335886692e-03, 2.5623e-01, 1.8542e-03, - 2DIAGNOSTIC, 14, -5.965129597650e-01, 7.801334897234e-03, 2.5778e-01, 1.5471e-03, - 2DIAGNOSTIC, 15, -6.024990514629e-01, 6.734899178581e-03, 2.6051e-01, 2.7339e-03, - 2DIAGNOSTIC, 16, -6.035020401727e-01, 5.513386825304e-03, 2.6209e-01, 1.5759e-03, - 2DIAGNOSTIC, 17, -6.055197410150e-01, 4.340333150389e-03, 2.6394e-01, 1.8542e-03, - 2DIAGNOSTIC, 18, -6.067304554092e-01, 3.042132035542e-03, 2.6649e-01, 2.5511e-03, - 2DIAGNOSTIC, 19, -6.079121945378e-01, 1.957186837369e-03, 2.6809e-01, 1.5950e-03, - 2DIAGNOSTIC, 20, -6.100238843663e-01, 1.155629510989e-03, 2.6965e-01, 1.5659e-03, - 2DIAGNOSTIC, 21, -6.115694796064e-01, 1.001927111513e-03, 2.7123e-01, 1.5800e-03, - 2DIAGNOSTIC, 22, -6.121040832760e-01, 8.764894926828e-04, 2.7305e-01, 1.8141e-03, - 2DIAGNOSTIC, 23, -6.123058506209e-01, 6.996975743038e-04, 2.7463e-01, 1.5860e-03, - 2DIAGNOSTIC, 24, -6.131232759997e-01, 5.314430279097e-04, 2.7627e-01, 1.6379e-03, - 2DIAGNOSTIC, 25, -6.226005876469e-01, 6.337928908415e-04, 2.7887e-01, 2.5961e-03, - 2DIAGNOSTIC, 26, -6.241937658223e-01, 7.115842989261e-04, 2.8070e-01, 1.8311e-03, - 2DIAGNOSTIC, 27, -6.249429443903e-01, 7.683851366763e-04, 2.8238e-01, 1.6820e-03, - 2DIAGNOSTIC, 28, -6.251145622353e-01, 7.757300754345e-04, 2.8421e-01, 1.8349e-03, - 2DIAGNOSTIC, 29, -6.251868412876e-01, 7.298701798478e-04, 2.8631e-01, 2.0990e-03, - 2DIAGNOSTIC, 30, -6.252167262136e-01, 6.503465035907e-04, 2.8819e-01, 1.8790e-03, - 2DIAGNOSTIC, 31, -6.242885633829e-01, 5.237822120386e-04, 2.8999e-01, 1.7982e-03, - 2DIAGNOSTIC, 32, -6.243104621861e-01, 3.672583594624e-04, 2.9161e-01, 1.6210e-03, - 2DIAGNOSTIC, 33, -6.238705195232e-01, 1.841538906234e-04, 2.9321e-01, 1.5950e-03, - 2DIAGNOSTIC, 34, -6.239262605723e-01, 4.111579993957e-06, 2.9484e-01, 1.6301e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.816106944894e-01, 1.797693134862e+308, 5.3571e-01, 2.4088e-01, - 2DIAGNOSTIC, 2, -4.805275601003e-01, 1.797693134862e+308, 5.3817e-01, 2.4579e-03, - 2DIAGNOSTIC, 3, -4.811596477719e-01, 1.797693134862e+308, 5.4020e-01, 2.0289e-03, - 2DIAGNOSTIC, 4, -4.816025412033e-01, 1.797693134862e+308, 5.4212e-01, 1.9181e-03, - 2DIAGNOSTIC, 5, -4.825858840889e-01, 1.797693134862e+308, 5.4421e-01, 2.0950e-03, - 2DIAGNOSTIC, 6, -4.845506737745e-01, 1.797693134862e+308, 5.4756e-01, 3.3491e-03, - 2DIAGNOSTIC, 7, -4.852437075709e-01, 1.797693134862e+308, 5.4993e-01, 2.3658e-03, - 2DIAGNOSTIC, 8, -4.854105856028e-01, 1.797693134862e+308, 5.5201e-01, 2.0809e-03, - 2DIAGNOSTIC, 9, -4.857226024158e-01, 1.797693134862e+308, 5.5421e-01, 2.2020e-03, - 2DIAGNOSTIC, 10, -4.857894083843e-01, 8.101681029860e-04, 5.5697e-01, 2.7530e-03, - 2DIAGNOSTIC, 11, -4.857683723806e-01, 7.300590811563e-04, 5.5984e-01, 2.8791e-03, - 2DIAGNOSTIC, 12, -4.857243784209e-01, 5.425197301286e-04, 5.6285e-01, 3.0029e-03, - 2DIAGNOSTIC, 13, -4.857204150527e-01, 3.647900149055e-04, 5.6616e-01, 3.3171e-03, - 2DIAGNOSTIC, 14, -4.858044732434e-01, 2.017260118527e-04, 5.6912e-01, 2.9581e-03, - 2DIAGNOSTIC, 15, -4.859536862713e-01, 8.460564999171e-05, 5.7143e-01, 2.3079e-03, - 2DIAGNOSTIC, 16, -4.862257704655e-01, 5.607082951785e-05, 5.7398e-01, 2.5461e-03, - 2DIAGNOSTIC, 17, -4.870358610255e-01, 7.766392085299e-05, 5.7619e-01, 2.2149e-03, - 2DIAGNOSTIC, 18, -4.878904241100e-01, 1.222641975335e-04, 5.7839e-01, 2.1980e-03, - 2DIAGNOSTIC, 19, -4.906875734157e-01, 2.463569317384e-04, 5.8065e-01, 2.2600e-03, - 2DIAGNOSTIC, 20, -4.924631752443e-01, 3.872905683373e-04, 5.8297e-01, 2.3210e-03, - 2DIAGNOSTIC, 21, -4.986082484989e-01, 6.487080981583e-04, 5.8655e-01, 3.5789e-03, - 2DIAGNOSTIC, 22, -4.980339021176e-01, 8.057771016881e-04, 5.8967e-01, 3.1190e-03, - 2DIAGNOSTIC, 23, -4.985345198783e-01, 8.886802603569e-04, 5.9217e-01, 2.4979e-03, - 2DIAGNOSTIC, 24, -4.989265697639e-01, 8.937897441204e-04, 5.9465e-01, 2.4829e-03, - 2DIAGNOSTIC, 25, -5.000341698105e-01, 8.425068942826e-04, 5.9743e-01, 2.7761e-03, - 2DIAGNOSTIC, 26, -5.001227801013e-01, 7.221754333981e-04, 6.0028e-01, 2.8522e-03, - 2DIAGNOSTIC, 27, -4.997182419154e-01, 5.527255755020e-04, 6.0427e-01, 3.9971e-03, - 2DIAGNOSTIC, 28, -4.997709974657e-01, 3.638110124911e-04, 6.0726e-01, 2.9862e-03, - 2DIAGNOSTIC, 29, -4.996389322430e-01, 2.072323522915e-04, 6.1092e-01, 3.6550e-03, - 2DIAGNOSTIC, 30, -4.996271472552e-01, 7.210043349035e-05, 6.1416e-01, 3.2399e-03, - 2DIAGNOSTIC, 31, -4.996044710372e-01, 5.406556449421e-05, 6.1678e-01, 2.6200e-03, - 2DIAGNOSTIC, 32, -4.998423038489e-01, 2.630171600575e-05, 6.1932e-01, 2.5411e-03, - 2DIAGNOSTIC, 33, -4.997639209563e-01, 5.216369063685e-06, 6.2184e-01, 2.5229e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.757252778924e-01, 1.797693134862e+308, 8.7280e-01, 2.5096e-01, - 2DIAGNOSTIC, 2, -3.767176563335e-01, 1.797693134862e+308, 8.8632e-01, 1.3526e-02, - 2DIAGNOSTIC, 3, -3.778022267141e-01, 1.797693134862e+308, 9.0007e-01, 1.3743e-02, - 2DIAGNOSTIC, 4, -3.788928722314e-01, 1.797693134862e+308, 9.1313e-01, 1.3067e-02, - 2DIAGNOSTIC, 5, -3.803660435108e-01, 1.797693134862e+308, 9.2768e-01, 1.4549e-02, - 2DIAGNOSTIC, 6, -3.808313018914e-01, 1.797693134862e+308, 9.4194e-01, 1.4258e-02, - 2DIAGNOSTIC, 7, -3.814699297070e-01, 1.797693134862e+308, 9.5413e-01, 1.2192e-02, - 2DIAGNOSTIC, 8, -3.822766111887e-01, 1.797693134862e+308, 9.6855e-01, 1.4421e-02, - 2DIAGNOSTIC, 9, -3.826905468042e-01, 1.797693134862e+308, 9.8112e-01, 1.2567e-02, - 2DIAGNOSTIC, 10, -3.847760733949e-01, 1.400488297918e-03, 9.9370e-01, 1.2583e-02, - 2DIAGNOSTIC, 11, -3.854061960268e-01, 1.254916554444e-03, 1.0083e+00, 1.4594e-02, - 2DIAGNOSTIC, 12, -3.855515274713e-01, 1.092697646977e-03, 1.0214e+00, 1.3101e-02, - 2DIAGNOSTIC, 13, -3.862654628580e-01, 9.611325382247e-04, 1.0359e+00, 1.4527e-02, - 2DIAGNOSTIC, 14, -3.903432543893e-01, 1.032819609445e-03, 1.0523e+00, 1.6339e-02, - 2DIAGNOSTIC, 15, -3.934956325718e-01, 1.222388882031e-03, 1.0647e+00, 1.2462e-02, - 2DIAGNOSTIC, 16, -4.004682207451e-01, 1.616268091881e-03, 1.0797e+00, 1.4985e-02, - 2DIAGNOSTIC, 17, -4.022882994358e-01, 1.916196670869e-03, 1.0944e+00, 1.4673e-02, - 2DIAGNOSTIC, 18, -4.032854465004e-01, 2.081707270744e-03, 1.1090e+00, 1.4598e-02, - 2DIAGNOSTIC, 19, -4.113233137838e-01, 2.359902062671e-03, 1.1218e+00, 1.2806e-02, - 2DIAGNOSTIC, 20, -4.331578309014e-01, 3.245321617189e-03, 1.1372e+00, 1.5387e-02, - 2DIAGNOSTIC, 21, -4.433092369094e-01, 4.084440707143e-03, 1.1551e+00, 1.7932e-02, - 2DIAGNOSTIC, 22, -4.458579628988e-01, 4.549790181902e-03, 1.1691e+00, 1.3990e-02, - 2DIAGNOSTIC, 23, -4.489028990317e-01, 4.674020837383e-03, 1.1838e+00, 1.4659e-02, - 2DIAGNOSTIC, 24, -4.596720020777e-01, 4.783409176680e-03, 1.1981e+00, 1.4387e-02, - 2DIAGNOSTIC, 25, -5.442820323746e-01, 6.837114636986e-03, 1.2143e+00, 1.6168e-02, - 2DIAGNOSTIC, 26, -5.874827693179e-01, 9.280407418984e-03, 1.2285e+00, 1.4144e-02, - 2DIAGNOSTIC, 27, -6.356979144216e-01, 1.182359317510e-02, 1.2425e+00, 1.4007e-02, - 2DIAGNOSTIC, 28, -6.487833583284e-01, 1.333588310472e-02, 1.2603e+00, 1.7844e-02, - 2DIAGNOSTIC, 29, -6.545766254323e-01, 1.375856435591e-02, 1.2749e+00, 1.4623e-02, - 2DIAGNOSTIC, 30, -6.750476784717e-01, 1.371932933600e-02, 1.2886e+00, 1.3670e-02, - 2DIAGNOSTIC, 31, -6.905146755757e-01, 1.288388815363e-02, 1.3005e+00, 1.1909e-02, - 2DIAGNOSTIC, 32, -6.923745998659e-01, 1.101533269297e-02, 1.3148e+00, 1.4256e-02, - 2DIAGNOSTIC, 33, -6.930604395372e-01, 8.381069029144e-03, 1.3268e+00, 1.2057e-02, - 2DIAGNOSTIC, 34, -6.942600341523e-01, 5.380730472249e-03, 1.3402e+00, 1.3387e-02, - 2DIAGNOSTIC, 35, -6.958933848591e-01, 3.567826223713e-03, 1.3576e+00, 1.7365e-02, - 2DIAGNOSTIC, 36, -6.959763782529e-01, 2.242816551551e-03, 1.3709e+00, 1.3334e-02, - 2DIAGNOSTIC, 37, -6.963095284313e-01, 1.566200047697e-03, 1.3826e+00, 1.1653e-02, - 2DIAGNOSTIC, 38, -6.965858707832e-01, 9.979643437619e-04, 1.3943e+00, 1.1761e-02, - 2DIAGNOSTIC, 39, -6.969256220791e-01, 4.592563465101e-04, 1.4083e+00, 1.3969e-02, - 2DIAGNOSTIC, 40, -6.974194638413e-01, 2.018035834099e-04, 1.4241e+00, 1.5802e-02, - 2DIAGNOSTIC, 41, -6.974973973105e-01, 1.524924742477e-04, 1.4397e+00, 1.5624e-02, - 2DIAGNOSTIC, 42, -6.976639805130e-01, 1.188927842865e-04, 1.4524e+00, 1.2662e-02, - 2DIAGNOSTIC, 43, -6.977611716200e-01, 8.595472357301e-05, 1.4659e+00, 1.3504e-02, - 2DIAGNOSTIC, 44, -6.977224859004e-01, 6.064901549294e-05, 1.4794e+00, 1.3493e-02, - 2DIAGNOSTIC, 45, -6.978046374977e-01, 5.168411426863e-05, 1.4952e+00, 1.5824e-02, - 2DIAGNOSTIC, 46, -6.977581139218e-01, 3.876514934859e-05, 1.5090e+00, 1.3781e-02, - 2DIAGNOSTIC, 47, -6.977952383037e-01, 2.717058060865e-05, 1.5235e+00, 1.4558e-02, - 2DIAGNOSTIC, 48, -6.977995242982e-01, 1.672867123623e-05, 1.5353e+00, 1.1719e-02, - 2DIAGNOSTIC, 49, -6.978049095663e-01, 8.898827443999e-06, 1.5506e+00, 1.5359e-02, - 2DIAGNOSTIC, 50, -6.978071745608e-01, 5.881281212875e-06, 1.5643e+00, 1.3635e-02, - 2DIAGNOSTIC, 51, -6.977665403169e-01, 2.871282676804e-06, 1.5759e+00, 1.1621e-02, - 2DIAGNOSTIC, 52, -6.977497492806e-01, 1.284137288522e-06, 1.5875e+00, 1.1597e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.858810992983e-01, 1.797693134862e+308, 2.0514e+00, 4.6392e-01, - 2DIAGNOSTIC, 2, -5.866613918589e-01, 1.797693134862e+308, 2.1325e+00, 8.1153e-02, - 2DIAGNOSTIC, 3, -5.868969654481e-01, 1.797693134862e+308, 2.2283e+00, 9.5771e-02, - 2DIAGNOSTIC, 4, -5.869976197052e-01, 1.797693134862e+308, 2.3110e+00, 8.2636e-02, - 2DIAGNOSTIC, 5, -5.870802142179e-01, 1.797693134862e+308, 2.3921e+00, 8.1146e-02, - 2DIAGNOSTIC, 6, -5.872226879718e-01, 1.797693134862e+308, 2.5094e+00, 1.1728e-01, - 2DIAGNOSTIC, 7, -5.872378472306e-01, 1.797693134862e+308, 2.5990e+00, 8.9572e-02, - 2DIAGNOSTIC, 8, -5.872480118066e-01, 1.797693134862e+308, 2.7091e+00, 1.1017e-01, - 2DIAGNOSTIC, 9, -5.872466188813e-01, 1.797693134862e+308, 2.8178e+00, 1.0873e-01, - 2DIAGNOSTIC, 10, -5.872479301045e-01, 1.126221194704e-04, 2.9114e+00, 9.3557e-02, - 2DIAGNOSTIC, 11, -5.872445794238e-01, 5.331089767503e-05, 3.0060e+00, 9.4582e-02, - 2DIAGNOSTIC, 12, -5.872408070742e-01, 3.049907593716e-05, 3.1047e+00, 9.8679e-02, - 2DIAGNOSTIC, 13, -5.872389770678e-01, 1.739993669188e-05, 3.1994e+00, 9.4720e-02, - 2DIAGNOSTIC, 14, -5.872350148405e-01, 8.142094190700e-06, 3.2915e+00, 9.2152e-02, - 2DIAGNOSTIC, 15, -5.872331734195e-01, 2.069679520628e-06, 3.3716e+00, 8.0025e-02, - Elapsed time (stage 0): 3.4956e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.252812699831e-01, 1.797693134862e+308, 2.0489e-01, 2.0489e-01, - 2DIAGNOSTIC, 2, -9.277664793326e-01, 1.797693134862e+308, 2.0635e-01, 1.4598e-03, - 2DIAGNOSTIC, 3, -9.303699213784e-01, 1.797693134862e+308, 2.0757e-01, 1.2219e-03, - 2DIAGNOSTIC, 4, -9.350259450073e-01, 1.797693134862e+308, 2.0877e-01, 1.1971e-03, - 2DIAGNOSTIC, 5, -9.428571730181e-01, 1.797693134862e+308, 2.1000e-01, 1.2281e-03, - 2DIAGNOSTIC, 6, -9.529260365206e-01, 1.797693134862e+308, 2.1121e-01, 1.2121e-03, - 2DIAGNOSTIC, 7, -9.699586523972e-01, 1.797693134862e+308, 2.1271e-01, 1.4961e-03, - 2DIAGNOSTIC, 8, -9.729236978778e-01, 1.797693134862e+308, 2.1417e-01, 1.4601e-03, - 2DIAGNOSTIC, 9, -9.759160973501e-01, 1.797693134862e+308, 2.1586e-01, 1.6959e-03, - 2DIAGNOSTIC, 10, -9.773798889598e-01, 4.247066398046e-03, 2.1760e-01, 1.7340e-03, - 2DIAGNOSTIC, 11, -9.770660952755e-01, 3.686571304988e-03, 2.2001e-01, 2.4149e-03, - 2DIAGNOSTIC, 12, -9.777724815860e-01, 2.967184186024e-03, 2.2188e-01, 1.8661e-03, - 2DIAGNOSTIC, 13, -9.780515742296e-01, 2.159454904860e-03, 2.2361e-01, 1.7359e-03, - 2DIAGNOSTIC, 14, -9.776614877650e-01, 1.366395271689e-03, 2.2510e-01, 1.4882e-03, - 2DIAGNOSTIC, 15, -9.772700649390e-01, 7.026727132860e-04, 2.2682e-01, 1.7169e-03, - 2DIAGNOSTIC, 16, -9.781324901463e-01, 2.538874926947e-04, 2.2860e-01, 1.7838e-03, - 2DIAGNOSTIC, 17, -9.769286480869e-01, 1.094434473975e-04, 2.3033e-01, 1.7312e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.304545413300e-01, 1.797693134862e+308, 4.3621e-01, 2.0588e-01, - 2DIAGNOSTIC, 2, -8.303051254651e-01, 1.797693134862e+308, 4.3820e-01, 1.9901e-03, - 2DIAGNOSTIC, 3, -8.324684985260e-01, 1.797693134862e+308, 4.4002e-01, 1.8139e-03, - 2DIAGNOSTIC, 4, -8.340568502952e-01, 1.797693134862e+308, 4.4208e-01, 2.0649e-03, - 2DIAGNOSTIC, 5, -8.350897726313e-01, 1.797693134862e+308, 4.4417e-01, 2.0919e-03, - 2DIAGNOSTIC, 6, -8.358333413425e-01, 1.797693134862e+308, 4.4605e-01, 1.8730e-03, - 2DIAGNOSTIC, 7, -8.364023155536e-01, 1.797693134862e+308, 4.4849e-01, 2.4390e-03, - 2DIAGNOSTIC, 8, -8.357470792239e-01, 1.797693134862e+308, 4.5067e-01, 2.1839e-03, - 2DIAGNOSTIC, 9, -8.361864031401e-01, 1.797693134862e+308, 4.5383e-01, 3.1581e-03, - 2DIAGNOSTIC, 10, -8.361354750274e-01, 4.916504246715e-04, 4.5634e-01, 2.5070e-03, - 2DIAGNOSTIC, 11, -8.362213602879e-01, 3.439829776859e-04, 4.5880e-01, 2.4672e-03, - 2DIAGNOSTIC, 12, -8.362555982844e-01, 1.862233130897e-04, 4.6133e-01, 2.5241e-03, - 2DIAGNOSTIC, 13, -8.362783843205e-01, 9.308511303865e-05, 4.6349e-01, 2.1620e-03, - 2DIAGNOSTIC, 14, -8.361031060289e-01, 3.904281965297e-05, 4.6564e-01, 2.1539e-03, - 2DIAGNOSTIC, 15, -8.359507391443e-01, 8.380186135012e-06, 4.6780e-01, 2.1560e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.104077938631e-01, 1.797693134862e+308, 6.9479e-01, 2.2699e-01, - 2DIAGNOSTIC, 2, -7.123088888850e-01, 1.797693134862e+308, 7.0649e-01, 1.1701e-02, - 2DIAGNOSTIC, 3, -7.142422720544e-01, 1.797693134862e+308, 7.1882e-01, 1.2327e-02, - 2DIAGNOSTIC, 4, -7.159658054476e-01, 1.797693134862e+308, 7.3148e-01, 1.2664e-02, - 2DIAGNOSTIC, 5, -7.174390961482e-01, 1.797693134862e+308, 7.4443e-01, 1.2950e-02, - 2DIAGNOSTIC, 6, -7.185696400591e-01, 1.797693134862e+308, 7.5662e-01, 1.2185e-02, - 2DIAGNOSTIC, 7, -7.195864446345e-01, 1.797693134862e+308, 7.7462e-01, 1.7999e-02, - 2DIAGNOSTIC, 8, -7.198355567570e-01, 1.797693134862e+308, 7.8709e-01, 1.2477e-02, - 2DIAGNOSTIC, 9, -7.200190660282e-01, 1.797693134862e+308, 8.0104e-01, 1.3949e-02, - 2DIAGNOSTIC, 10, -7.202988601931e-01, 8.924807662025e-04, 8.1663e-01, 1.5585e-02, - 2DIAGNOSTIC, 11, -7.202539094373e-01, 6.286299313712e-04, 8.3317e-01, 1.6538e-02, - 2DIAGNOSTIC, 12, -7.209512506756e-01, 4.377504528142e-04, 8.4771e-01, 1.4548e-02, - 2DIAGNOSTIC, 13, -7.210040672988e-01, 2.964409343786e-04, 8.6019e-01, 1.2479e-02, - 2DIAGNOSTIC, 14, -7.209642442010e-01, 1.960062316317e-04, 8.7440e-01, 1.4206e-02, - 2DIAGNOSTIC, 15, -7.209598043682e-01, 1.298687946431e-04, 8.8677e-01, 1.2371e-02, - 2DIAGNOSTIC, 16, -7.209651828484e-01, 8.777310137216e-05, 9.0123e-01, 1.4459e-02, - 2DIAGNOSTIC, 17, -7.210227092552e-01, 6.744577222910e-05, 9.1562e-01, 1.4396e-02, - 2DIAGNOSTIC, 18, -7.210684416124e-01, 4.963832580495e-05, 9.2844e-01, 1.2811e-02, - 2DIAGNOSTIC, 19, -7.210817959270e-01, 3.343101892631e-05, 9.4099e-01, 1.2554e-02, - 2DIAGNOSTIC, 20, -7.211286649615e-01, 2.259101456335e-05, 9.5496e-01, 1.3966e-02, - 2DIAGNOSTIC, 21, -7.213110767846e-01, 1.302758481511e-05, 9.6763e-01, 1.2676e-02, - 2DIAGNOSTIC, 22, -7.218001864517e-01, 2.443699470871e-05, 9.8417e-01, 1.6543e-02, - 2DIAGNOSTIC, 23, -7.218170093955e-01, 3.370977658939e-05, 1.0044e+00, 2.0197e-02, - 2DIAGNOSTIC, 24, -7.218102839592e-01, 3.855867689337e-05, 1.0189e+00, 1.4503e-02, - 2DIAGNOSTIC, 25, -7.218105205208e-01, 3.958493752523e-05, 1.0324e+00, 1.3552e-02, - 2DIAGNOSTIC, 26, -7.218106075254e-01, 3.692450680551e-05, 1.0442e+00, 1.1791e-02, - 2DIAGNOSTIC, 27, -7.218108017134e-01, 3.180515809304e-05, 1.0567e+00, 1.2480e-02, - 2DIAGNOSTIC, 28, -7.218111817724e-01, 2.482966459093e-05, 1.0691e+00, 1.2389e-02, - 2DIAGNOSTIC, 29, -7.218337579267e-01, 1.670947785962e-05, 1.0826e+00, 1.3558e-02, - 2DIAGNOSTIC, 30, -7.218563407357e-01, 8.574570769145e-06, 1.0968e+00, 1.4175e-02, - 2DIAGNOSTIC, 31, -7.217903341146e-01, 1.555209007291e-06, 1.1104e+00, 1.3615e-02, - 2DIAGNOSTIC, 32, -7.218345566609e-01, 1.529098019266e-06, 1.1529e+00, 4.2504e-02, - 2DIAGNOSTIC, 33, -7.218345566603e-01, 1.636314608075e-06, 1.1664e+00, 1.3450e-02, - 2DIAGNOSTIC, 34, -7.218345566603e-01, 1.583775221269e-06, 1.1800e+00, 1.3637e-02, - 2DIAGNOSTIC, 35, -7.218345566603e-01, 1.481289335088e-06, 1.1934e+00, 1.3395e-02, - 2DIAGNOSTIC, 36, -7.218345566603e-01, 1.344703357799e-06, 1.2069e+00, 1.3434e-02, - 2DIAGNOSTIC, 37, -7.218345566603e-01, 1.175309442346e-06, 1.2204e+00, 1.3500e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.055811324623e-01, 1.797693134862e+308, 1.6396e+00, 4.1921e-01, - 2DIAGNOSTIC, 2, -6.061035386368e-01, 1.797693134862e+308, 1.7285e+00, 8.8898e-02, - 2DIAGNOSTIC, 3, -6.062773805827e-01, 1.797693134862e+308, 1.8225e+00, 9.4052e-02, - 2DIAGNOSTIC, 4, -6.063439326411e-01, 1.797693134862e+308, 1.9307e+00, 1.0822e-01, - 2DIAGNOSTIC, 5, -6.064194742876e-01, 1.797693134862e+308, 2.0344e+00, 1.0365e-01, - 2DIAGNOSTIC, 6, -6.064454003519e-01, 1.797693134862e+308, 2.1333e+00, 9.8936e-02, - 2DIAGNOSTIC, 7, -6.064260211282e-01, 1.797693134862e+308, 2.2204e+00, 8.7064e-02, - 2DIAGNOSTIC, 8, -6.064274053187e-01, 1.797693134862e+308, 2.3147e+00, 9.4277e-02, - 2DIAGNOSTIC, 9, -6.064440134111e-01, 1.797693134862e+308, 2.3946e+00, 7.9900e-02, - 2DIAGNOSTIC, 10, -6.064588116823e-01, 6.520164194662e-05, 2.4993e+00, 1.0473e-01, - 2DIAGNOSTIC, 11, -6.064494851949e-01, 2.740468574554e-05, 2.6342e+00, 1.3490e-01, - 2DIAGNOSTIC, 12, -6.064505123656e-01, 1.407869541886e-05, 2.7376e+00, 1.0344e-01, - 2DIAGNOSTIC, 13, -6.064437572837e-01, 7.778541396122e-06, 2.8400e+00, 1.0239e-01, - 2DIAGNOSTIC, 14, -6.064369516988e-01, 3.812457675306e-06, 2.9709e+00, 1.3087e-01, - 2DIAGNOSTIC, 15, -6.064313179949e-01, 2.384795589436e-06, 3.0725e+00, 1.0164e-01, - 2DIAGNOSTIC, 16, -6.064301503594e-01, 1.863396747487e-06, 3.1733e+00, 1.0081e-01, - Elapsed time (stage 1): 3.2873e+00 - - -Total elapsed time: 6.7864e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:49:37 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 02:49:38 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55e5f8bcd4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 63.4059, -114.851] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e5f8bd2fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f6e94894010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55e5f8bce850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 63.4059, -114.851] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e5f8bcbf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f6e911d5010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55e5f8be5b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 63.4059, -114.851] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e5f8bd2550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f6e8db16010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55e5f8bead70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 63.4059, -114.851] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e5f8be8c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f6e8a457010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55e5f8becf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 63.4059, -114.851] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e5f8beb3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f6e86d98010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55e5f8bed540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 63.4059, -114.851] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e5f8bed4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f6e836d9010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.556692590261e-01, 1.797693134862e+308, 2.1556e-01, 2.1556e-01, - 2DIAGNOSTIC, 2, -6.578027232236e-01, 1.797693134862e+308, 2.1755e-01, 1.9870e-03, - 2DIAGNOSTIC, 3, -6.601511947586e-01, 1.797693134862e+308, 2.1952e-01, 1.9722e-03, - 2DIAGNOSTIC, 4, -6.619603764428e-01, 1.797693134862e+308, 2.2142e-01, 1.9000e-03, - 2DIAGNOSTIC, 5, -6.627644878285e-01, 1.797693134862e+308, 2.2344e-01, 2.0130e-03, - 2DIAGNOSTIC, 6, -6.630847724563e-01, 1.797693134862e+308, 2.2550e-01, 2.0671e-03, - 2DIAGNOSTIC, 7, -6.630739876177e-01, 1.797693134862e+308, 2.2816e-01, 2.6581e-03, - 2DIAGNOSTIC, 8, -6.631657129779e-01, 1.797693134862e+308, 2.3021e-01, 2.0530e-03, - 2DIAGNOSTIC, 9, -6.632561066568e-01, 1.797693134862e+308, 2.3311e-01, 2.8999e-03, - 2DIAGNOSTIC, 10, -6.633584451821e-01, 6.538488048654e-04, 2.3526e-01, 2.1460e-03, - 2DIAGNOSTIC, 11, -6.633895978891e-01, 3.732664152400e-04, 2.3733e-01, 2.0700e-03, - 2DIAGNOSTIC, 12, -6.634411707756e-01, 1.834187742987e-04, 2.3970e-01, 2.3699e-03, - 2DIAGNOSTIC, 13, -6.638177822144e-01, 9.527111712197e-05, 2.4256e-01, 2.8570e-03, - 2DIAGNOSTIC, 14, -6.638586331993e-01, 6.708958741167e-05, 2.4468e-01, 2.1219e-03, - 2DIAGNOSTIC, 15, -6.638612117273e-01, 5.967586705508e-05, 2.4677e-01, 2.0912e-03, - 2DIAGNOSTIC, 16, -6.638655234827e-01, 5.684421723207e-05, 2.4881e-01, 2.0361e-03, - 2DIAGNOSTIC, 17, -6.638719485175e-01, 4.914437919181e-05, 2.5111e-01, 2.3038e-03, - 2DIAGNOSTIC, 18, -6.638871106144e-01, 4.030117232334e-05, 2.5460e-01, 3.4881e-03, - 2DIAGNOSTIC, 19, -6.638872021894e-01, 3.077059336187e-05, 2.5675e-01, 2.1560e-03, - 2DIAGNOSTIC, 20, -6.638876024247e-01, 2.182258271775e-05, 2.5894e-01, 2.1908e-03, - 2DIAGNOSTIC, 21, -6.638885281109e-01, 1.257798356565e-05, 2.6111e-01, 2.1620e-03, - 2DIAGNOSTIC, 22, -6.638902213103e-01, 3.976935275367e-06, 2.6329e-01, 2.1820e-03, - 2DIAGNOSTIC, 23, -6.638926904404e-01, 2.930502930258e-06, 2.6593e-01, 2.6381e-03, - 2DIAGNOSTIC, 24, -6.638929799556e-01, 2.561393414202e-06, 2.6829e-01, 2.3608e-03, - 2DIAGNOSTIC, 25, -6.638937414733e-01, 2.167398221994e-06, 2.7067e-01, 2.3811e-03, - 2DIAGNOSTIC, 26, -6.638958955277e-01, 1.826363833661e-06, 2.7375e-01, 3.0849e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.583278662359e-01, 1.797693134862e+308, 4.9227e-01, 2.1851e-01, - 2DIAGNOSTIC, 2, -5.599227580786e-01, 1.797693134862e+308, 5.0606e-01, 1.3791e-02, - 2DIAGNOSTIC, 3, -5.608656303504e-01, 1.797693134862e+308, 5.1840e-01, 1.2342e-02, - 2DIAGNOSTIC, 4, -5.610522586439e-01, 1.797693134862e+308, 5.3147e-01, 1.3075e-02, - 2DIAGNOSTIC, 5, -5.609887846239e-01, 1.797693134862e+308, 5.4447e-01, 1.2998e-02, - 2DIAGNOSTIC, 6, -5.609903264562e-01, 1.797693134862e+308, 5.5777e-01, 1.3295e-02, - 2DIAGNOSTIC, 7, -5.609924368074e-01, 1.797693134862e+308, 5.7092e-01, 1.3150e-02, - 2DIAGNOSTIC, 8, -5.610093291960e-01, 1.797693134862e+308, 5.8239e-01, 1.1475e-02, - 2DIAGNOSTIC, 9, -5.610214310834e-01, 1.797693134862e+308, 5.9570e-01, 1.3308e-02, - 2DIAGNOSTIC, 10, -5.609864651333e-01, 1.903307376503e-04, 6.0748e-01, 1.1781e-02, - 2DIAGNOSTIC, 11, -5.610185563325e-01, 5.771713013422e-05, 6.2072e-01, 1.3240e-02, - 2DIAGNOSTIC, 12, -5.609962972280e-01, 7.590747581193e-06, 6.3333e-01, 1.2609e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.716059873708e-01, 1.797693134862e+308, 9.8520e-01, 3.5187e-01, - 2DIAGNOSTIC, 2, -4.719390551886e-01, 1.797693134862e+308, 1.0629e+00, 7.7672e-02, - 2DIAGNOSTIC, 3, -4.720381840477e-01, 1.797693134862e+308, 1.1403e+00, 7.7393e-02, - 2DIAGNOSTIC, 4, -4.721200314981e-01, 1.797693134862e+308, 1.2194e+00, 7.9157e-02, - 2DIAGNOSTIC, 5, -4.724106201633e-01, 1.797693134862e+308, 1.3533e+00, 1.3384e-01, - 2DIAGNOSTIC, 6, -4.725258989708e-01, 1.797693134862e+308, 1.4591e+00, 1.0581e-01, - 2DIAGNOSTIC, 7, -4.725435010416e-01, 1.797693134862e+308, 1.5778e+00, 1.1870e-01, - 2DIAGNOSTIC, 8, -4.725524823927e-01, 1.797693134862e+308, 1.7071e+00, 1.2936e-01, - 2DIAGNOSTIC, 9, -4.725537558131e-01, 1.797693134862e+308, 1.8366e+00, 1.2950e-01, - 2DIAGNOSTIC, 10, -4.725547647842e-01, 1.273650228391e-04, 1.9242e+00, 8.7596e-02, - 2DIAGNOSTIC, 11, -4.725518617522e-01, 8.154497789228e-05, 2.0139e+00, 8.9709e-02, - 2DIAGNOSTIC, 12, -4.725492911838e-01, 5.299768578124e-05, 2.1043e+00, 9.0370e-02, - 2DIAGNOSTIC, 13, -4.725473733533e-01, 2.893078489791e-05, 2.1911e+00, 8.6747e-02, - 2DIAGNOSTIC, 14, -4.725464903224e-01, 9.088043395056e-06, 2.2749e+00, 8.3798e-02, - 2DIAGNOSTIC, 15, -4.725444992743e-01, 2.725531703482e-06, 2.3747e+00, 9.9817e-02, - 2DIAGNOSTIC, 16, -4.725452348158e-01, 1.454229680703e-06, 2.4822e+00, 1.0755e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.132987648220e-01, 1.797693134862e+308, 3.8539e+00, 1.3717e+00, - 2DIAGNOSTIC, 2, -4.133660663499e-01, 1.797693134862e+308, 5.2015e+00, 1.3476e+00, - 2DIAGNOSTIC, 3, -4.133663047076e-01, 1.797693134862e+308, 5.7323e+00, 5.3073e-01, - 2DIAGNOSTIC, 4, -4.133662188383e-01, 1.797693134862e+308, 6.3542e+00, 6.2195e-01, - 2DIAGNOSTIC, 5, -4.133661593376e-01, 1.797693134862e+308, 6.9295e+00, 5.7527e-01, - 2DIAGNOSTIC, 6, -4.133658320404e-01, 1.797693134862e+308, 7.4546e+00, 5.2507e-01, - 2DIAGNOSTIC, 7, -4.133660082295e-01, 1.797693134862e+308, 8.0622e+00, 6.0766e-01, - 2DIAGNOSTIC, 8, -4.133656425658e-01, 1.797693134862e+308, 8.8193e+00, 7.5710e-01, - 2DIAGNOSTIC, 9, -4.133657208449e-01, 1.797693134862e+308, 9.4373e+00, 6.1801e-01, - 2DIAGNOSTIC, 10, -4.133657639565e-01, 7.724453758962e-06, 1.0037e+01, 5.9985e-01, - 2DIAGNOSTIC, 11, -4.133654775797e-01, 2.790413505052e-06, 1.0589e+01, 5.5158e-01, - 2DIAGNOSTIC, 12, -4.133654886444e-01, 2.544658046194e-06, 1.1143e+01, 5.5430e-01, - 2DIAGNOSTIC, 13, -4.133653554276e-01, 2.351785351143e-06, 1.1687e+01, 5.4425e-01, - 2DIAGNOSTIC, 14, -4.133655386080e-01, 2.199878314374e-06, 1.2236e+01, 5.4832e-01, - 2DIAGNOSTIC, 15, -4.133654405153e-01, 2.067552923618e-06, 1.2848e+01, 6.1232e-01, - 2DIAGNOSTIC, 16, -4.133656266450e-01, 1.950542800638e-06, 1.3459e+01, 6.1072e-01, - 2DIAGNOSTIC, 17, -4.133654966452e-01, 1.853033033239e-06, 1.4004e+01, 5.4511e-01, - 2DIAGNOSTIC, 18, -4.133653818206e-01, 1.749661773576e-06, 1.4546e+01, 5.4234e-01, - 2DIAGNOSTIC, 19, -4.133652932357e-01, 1.658355741445e-06, 1.5100e+01, 5.5341e-01, - 2DIAGNOSTIC, 20, -4.133650933035e-01, 1.572451701196e-06, 1.5650e+01, 5.5020e-01, - 2DIAGNOSTIC, 21, -4.133652165112e-01, 1.491119754879e-06, 1.6300e+01, 6.5041e-01, - 2DIAGNOSTIC, 22, -4.133650848150e-01, 1.415587972481e-06, 1.7051e+01, 7.5128e-01, - 2DIAGNOSTIC, 23, -4.133649737328e-01, 1.342199120229e-06, 1.7670e+01, 6.1810e-01, - 2DIAGNOSTIC, 24, -4.133648483060e-01, 1.280673905903e-06, 1.8221e+01, 5.5193e-01, - 2DIAGNOSTIC, 25, -4.133647412467e-01, 1.222481042867e-06, 1.8832e+01, 6.1044e-01, - 2DIAGNOSTIC, 26, -4.133647698262e-01, 1.179132710333e-06, 1.9445e+01, 6.1325e-01, - 2DIAGNOSTIC, 27, -4.133646386620e-01, 1.136443990676e-06, 1.9988e+01, 5.4246e-01, - 2DIAGNOSTIC, 28, -4.133645213275e-01, 1.095217623696e-06, 2.0602e+01, 6.1474e-01, - 2DIAGNOSTIC, 29, -4.133645554444e-01, 1.059644537296e-06, 2.1125e+01, 5.2237e-01, - 2DIAGNOSTIC, 30, -4.133644603064e-01, 1.022990063965e-06, 2.1673e+01, 5.4784e-01, - Elapsed time (stage 0): 2.2042e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.586814468583e-01, 1.797693134862e+308, 1.8517e-01, 1.8517e-01, - 2DIAGNOSTIC, 2, -6.599566624941e-01, 1.797693134862e+308, 1.8744e-01, 2.2759e-03, - 2DIAGNOSTIC, 3, -6.616983307385e-01, 1.797693134862e+308, 1.8964e-01, 2.1970e-03, - 2DIAGNOSTIC, 4, -6.632652114381e-01, 1.797693134862e+308, 1.9180e-01, 2.1622e-03, - 2DIAGNOSTIC, 5, -6.643340454401e-01, 1.797693134862e+308, 1.9400e-01, 2.1961e-03, - 2DIAGNOSTIC, 6, -6.654658501857e-01, 1.797693134862e+308, 1.9603e-01, 2.0308e-03, - 2DIAGNOSTIC, 7, -6.660364494178e-01, 1.797693134862e+308, 1.9839e-01, 2.3651e-03, - 2DIAGNOSTIC, 8, -6.680535701465e-01, 1.797693134862e+308, 2.0128e-01, 2.8858e-03, - 2DIAGNOSTIC, 9, -6.678730929603e-01, 1.797693134862e+308, 2.0325e-01, 1.9722e-03, - 2DIAGNOSTIC, 10, -6.684262983786e-01, 9.701333346585e-04, 2.0565e-01, 2.3940e-03, - 2DIAGNOSTIC, 11, -6.686406721161e-01, 7.657466864002e-04, 2.0956e-01, 3.9108e-03, - 2DIAGNOSTIC, 12, -6.686461437894e-01, 5.715100654471e-04, 2.1164e-01, 2.0881e-03, - 2DIAGNOSTIC, 13, -6.686857647857e-01, 4.132537061187e-04, 2.1377e-01, 2.1300e-03, - 2DIAGNOSTIC, 14, -6.687420280582e-01, 2.895522609391e-04, 2.1588e-01, 2.1091e-03, - 2DIAGNOSTIC, 15, -6.688121521876e-01, 1.885188080131e-04, 2.1803e-01, 2.1448e-03, - 2DIAGNOSTIC, 16, -6.688780922901e-01, 1.149877704186e-04, 2.2016e-01, 2.1291e-03, - 2DIAGNOSTIC, 17, -6.689250996698e-01, 5.393253418809e-05, 2.2228e-01, 2.1241e-03, - 2DIAGNOSTIC, 18, -6.689628769027e-01, 4.392878812821e-05, 2.2445e-01, 2.1660e-03, - 2DIAGNOSTIC, 19, -6.690404380437e-01, 2.845227309488e-05, 2.2692e-01, 2.4681e-03, - 2DIAGNOSTIC, 20, -6.694058265369e-01, 3.145069875757e-05, 2.2931e-01, 2.3980e-03, - 2DIAGNOSTIC, 21, -6.694776592320e-01, 3.700398335389e-05, 2.3318e-01, 3.8669e-03, - 2DIAGNOSTIC, 22, -6.694798384678e-01, 3.894653169371e-05, 2.3526e-01, 2.0752e-03, - 2DIAGNOSTIC, 23, -6.694884015077e-01, 3.821503761124e-05, 2.3742e-01, 2.1651e-03, - 2DIAGNOSTIC, 24, -6.695002414003e-01, 3.526076196916e-05, 2.3968e-01, 2.2562e-03, - 2DIAGNOSTIC, 25, -6.695120313611e-01, 3.062358697414e-05, 2.4195e-01, 2.2771e-03, - 2DIAGNOSTIC, 26, -6.695227302556e-01, 2.480266484609e-05, 2.4423e-01, 2.2781e-03, - 2DIAGNOSTIC, 27, -6.695372577231e-01, 1.825131325557e-05, 2.4652e-01, 2.2888e-03, - 2DIAGNOSTIC, 28, -6.695539992582e-01, 1.143519360448e-05, 2.4882e-01, 2.2981e-03, - 2DIAGNOSTIC, 29, -6.695638600173e-01, 5.255267426341e-06, 2.5242e-01, 3.6042e-03, - 2DIAGNOSTIC, 30, -6.695645049395e-01, 4.261353388282e-06, 2.5479e-01, 2.3670e-03, - 2DIAGNOSTIC, 31, -6.695655689748e-01, 4.034560610350e-06, 2.5709e-01, 2.3041e-03, - 2DIAGNOSTIC, 32, -6.695667759593e-01, 3.580644641392e-06, 2.5940e-01, 2.3098e-03, - 2DIAGNOSTIC, 33, -6.695681331008e-01, 3.031932093236e-06, 2.6170e-01, 2.2979e-03, - 2DIAGNOSTIC, 34, -6.695695785527e-01, 2.483163822981e-06, 2.6389e-01, 2.1899e-03, - 2DIAGNOSTIC, 35, -6.695707836275e-01, 1.978046228413e-06, 2.6716e-01, 3.2730e-03, - 2DIAGNOSTIC, 36, -6.695711704043e-01, 1.529767349368e-06, 2.6938e-01, 2.2130e-03, - 2DIAGNOSTIC, 37, -6.695713649039e-01, 1.209729663328e-06, 2.7237e-01, 2.9900e-03, - 2DIAGNOSTIC, 38, -6.695714689579e-01, 1.059005016339e-06, 2.7679e-01, 4.4219e-03, - 2DIAGNOSTIC, 39, -6.695714697090e-01, 1.002485405702e-06, 2.7913e-01, 2.3420e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.609359632231e-01, 1.797693134862e+308, 4.9542e-01, 2.1629e-01, - 2DIAGNOSTIC, 2, -5.619032435947e-01, 1.797693134862e+308, 5.1098e-01, 1.5555e-02, - 2DIAGNOSTIC, 3, -5.627220204120e-01, 1.797693134862e+308, 5.2558e-01, 1.4604e-02, - 2DIAGNOSTIC, 4, -5.632420167478e-01, 1.797693134862e+308, 5.4036e-01, 1.4775e-02, - 2DIAGNOSTIC, 5, -5.638646978892e-01, 1.797693134862e+308, 5.5849e-01, 1.8139e-02, - 2DIAGNOSTIC, 6, -5.643531310836e-01, 1.797693134862e+308, 5.7495e-01, 1.6451e-02, - 2DIAGNOSTIC, 7, -5.644964177021e-01, 1.797693134862e+308, 5.9103e-01, 1.6088e-02, - 2DIAGNOSTIC, 8, -5.645694024973e-01, 1.797693134862e+308, 6.0901e-01, 1.7978e-02, - 2DIAGNOSTIC, 9, -5.645926632650e-01, 1.797693134862e+308, 6.2378e-01, 1.4769e-02, - 2DIAGNOSTIC, 10, -5.647003282544e-01, 4.105421523284e-04, 6.3864e-01, 1.4864e-02, - 2DIAGNOSTIC, 11, -5.647254994903e-01, 2.711237351693e-04, 6.5735e-01, 1.8702e-02, - 2DIAGNOSTIC, 12, -5.647374852569e-01, 1.716310852361e-04, 6.7417e-01, 1.6824e-02, - 2DIAGNOSTIC, 13, -5.647607967152e-01, 1.048837284233e-04, 6.9012e-01, 1.5949e-02, - 2DIAGNOSTIC, 14, -5.648062183499e-01, 5.835003833822e-05, 7.0460e-01, 1.4481e-02, - 2DIAGNOSTIC, 15, -5.648574658460e-01, 3.508638982563e-05, 7.2126e-01, 1.6656e-02, - 2DIAGNOSTIC, 16, -5.648845409061e-01, 2.781396420652e-05, 7.3989e-01, 1.8636e-02, - 2DIAGNOSTIC, 17, -5.648921559265e-01, 2.349806279448e-05, 7.5421e-01, 1.4320e-02, - 2DIAGNOSTIC, 18, -5.649460534452e-01, 2.125466260770e-05, 7.7041e-01, 1.6195e-02, - 2DIAGNOSTIC, 19, -5.651442149632e-01, 2.318945010279e-05, 7.8713e-01, 1.6727e-02, - 2DIAGNOSTIC, 20, -5.651795423148e-01, 2.637604355338e-05, 8.0586e-01, 1.8724e-02, - 2DIAGNOSTIC, 21, -5.651927821253e-01, 2.792544975770e-05, 8.2052e-01, 1.4666e-02, - 2DIAGNOSTIC, 22, -5.652122547163e-01, 2.766981888751e-05, 8.3565e-01, 1.5125e-02, - 2DIAGNOSTIC, 23, -5.652206815567e-01, 2.563988562977e-05, 8.5481e-01, 1.9163e-02, - 2DIAGNOSTIC, 24, -5.652269106259e-01, 2.249546921192e-05, 8.7179e-01, 1.6976e-02, - 2DIAGNOSTIC, 25, -5.652293923926e-01, 1.867830240605e-05, 8.8657e-01, 1.4785e-02, - 2DIAGNOSTIC, 26, -5.652304468831e-01, 1.412848522044e-05, 9.0319e-01, 1.6620e-02, - 2DIAGNOSTIC, 27, -5.652316133223e-01, 8.885284302235e-06, 9.2404e-01, 2.0851e-02, - 2DIAGNOSTIC, 28, -5.652319711455e-01, 4.171292964122e-06, 9.3895e-01, 1.4902e-02, - 2DIAGNOSTIC, 29, -5.652330204373e-01, 2.943183629193e-06, 9.5415e-01, 1.5200e-02, - 2DIAGNOSTIC, 30, -5.652337249826e-01, 2.225855327755e-06, 9.6917e-01, 1.5020e-02, - 2DIAGNOSTIC, 31, -5.652342359048e-01, 1.661646029348e-06, 1.0178e+00, 4.8596e-02, - 2DIAGNOSTIC, 32, -5.652342359038e-01, 1.376752083178e-06, 1.0617e+00, 4.3905e-02, - 2DIAGNOSTIC, 33, -5.652342359038e-01, 1.199536456158e-06, 1.0802e+00, 1.8560e-02, - 2DIAGNOSTIC, 34, -5.652342359038e-01, 1.101927122039e-06, 1.0980e+00, 1.7772e-02, - 2DIAGNOSTIC, 35, -5.652342359038e-01, 1.029477291060e-06, 1.1153e+00, 1.7320e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.759364754194e-01, 1.797693134862e+308, 1.5352e+00, 4.1987e-01, - 2DIAGNOSTIC, 2, -4.762584248622e-01, 1.797693134862e+308, 1.6365e+00, 1.0127e-01, - 2DIAGNOSTIC, 3, -4.763936416666e-01, 1.797693134862e+308, 1.7390e+00, 1.0256e-01, - 2DIAGNOSTIC, 4, -4.764929639090e-01, 1.797693134862e+308, 1.8552e+00, 1.1617e-01, - 2DIAGNOSTIC, 5, -4.765496404370e-01, 1.797693134862e+308, 1.9952e+00, 1.3996e-01, - 2DIAGNOSTIC, 6, -4.765877109202e-01, 1.797693134862e+308, 2.0967e+00, 1.0156e-01, - 2DIAGNOSTIC, 7, -4.766134797861e-01, 1.797693134862e+308, 2.1953e+00, 9.8576e-02, - 2DIAGNOSTIC, 8, -4.766687719698e-01, 1.797693134862e+308, 2.3465e+00, 1.5121e-01, - 2DIAGNOSTIC, 9, -4.766827161023e-01, 1.797693134862e+308, 2.4615e+00, 1.1504e-01, - 2DIAGNOSTIC, 10, -4.767004123472e-01, 8.610992610576e-05, 2.5649e+00, 1.0334e-01, - 2DIAGNOSTIC, 11, -4.767048048005e-01, 5.209739336276e-05, 2.6671e+00, 1.0227e-01, - 2DIAGNOSTIC, 12, -4.767135713867e-01, 3.567051278472e-05, 2.8088e+00, 1.4164e-01, - 2DIAGNOSTIC, 13, -4.767187058679e-01, 2.511315109581e-05, 2.9236e+00, 1.1486e-01, - 2DIAGNOSTIC, 14, -4.767192193639e-01, 1.820661362222e-05, 3.0380e+00, 1.1434e-01, - 2DIAGNOSTIC, 15, -4.767183308537e-01, 1.298241330651e-05, 3.1384e+00, 1.0038e-01, - 2DIAGNOSTIC, 16, -4.767189508783e-01, 8.861178257019e-06, 3.2384e+00, 1.0006e-01, - 2DIAGNOSTIC, 17, -4.767195388969e-01, 5.470088703503e-06, 3.3396e+00, 1.0119e-01, - 2DIAGNOSTIC, 18, -4.767204833294e-01, 3.977975308843e-06, 3.4524e+00, 1.1275e-01, - 2DIAGNOSTIC, 19, -4.767235204713e-01, 2.960258745653e-06, 3.5838e+00, 1.3141e-01, - 2DIAGNOSTIC, 20, -4.767236215484e-01, 2.455772998469e-06, 3.6851e+00, 1.0138e-01, - 2DIAGNOSTIC, 21, -4.767236365316e-01, 2.039915167902e-06, 3.7769e+00, 9.1773e-02, - 2DIAGNOSTIC, 22, -4.767236528347e-01, 1.847651258109e-06, 3.8759e+00, 9.8969e-02, - 2DIAGNOSTIC, 23, -4.767236877431e-01, 1.767446907372e-06, 4.0731e+00, 1.9722e-01, - 2DIAGNOSTIC, 24, -4.767236912513e-01, 1.670440829327e-06, 4.1730e+00, 9.9880e-02, - 2DIAGNOSTIC, 25, -4.767236970058e-01, 1.527580919501e-06, 4.2733e+00, 1.0028e-01, - 2DIAGNOSTIC, 26, -4.767237054266e-01, 1.387153668868e-06, 4.3740e+00, 1.0076e-01, - 2DIAGNOSTIC, 27, -4.767237173663e-01, 1.255218184976e-06, 4.4737e+00, 9.9648e-02, - 2DIAGNOSTIC, 28, -4.767237322727e-01, 1.144048338571e-06, 4.5751e+00, 1.0146e-01, - 2DIAGNOSTIC, 29, -4.767237538110e-01, 1.102645201506e-06, 4.6747e+00, 9.9536e-02, - 2DIAGNOSTIC, 30, -4.767237673327e-01, 1.065753801391e-06, 4.8162e+00, 1.4151e-01, - 2DIAGNOSTIC, 31, -4.767237682055e-01, 1.031049857429e-06, 5.1662e+00, 3.5001e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.140379033524e-01, 1.797693134862e+308, 6.5148e+00, 1.3486e+00, - 2DIAGNOSTIC, 2, -4.140952912063e-01, 1.797693134862e+308, 7.1153e+00, 6.0044e-01, - 2DIAGNOSTIC, 3, -4.141513586000e-01, 1.797693134862e+308, 7.8650e+00, 7.4974e-01, - 2DIAGNOSTIC, 4, -4.141867422776e-01, 1.797693134862e+308, 8.5442e+00, 6.7920e-01, - 2DIAGNOSTIC, 5, -4.142217083567e-01, 1.797693134862e+308, 9.1496e+00, 6.0536e-01, - 2DIAGNOSTIC, 6, -4.142323428007e-01, 1.797693134862e+308, 9.8363e+00, 6.8678e-01, - 2DIAGNOSTIC, 7, -4.142339555992e-01, 1.797693134862e+308, 1.0385e+01, 5.4842e-01, - 2DIAGNOSTIC, 8, -4.142416078663e-01, 1.797693134862e+308, 1.0938e+01, 5.5276e-01, - 2DIAGNOSTIC, 9, -4.142640905519e-01, 1.797693134862e+308, 1.2679e+01, 1.7417e+00, - 2DIAGNOSTIC, 10, -4.142640905471e-01, 3.480097221546e-05, 1.4499e+01, 1.8197e+00, - 2DIAGNOSTIC, 11, -4.142640905471e-01, 2.354871276133e-05, 1.5099e+01, 6.0058e-01, - 2DIAGNOSTIC, 12, -4.142640905471e-01, 1.558193854916e-05, 1.5727e+01, 6.2717e-01, - 2DIAGNOSTIC, 13, -4.142640905471e-01, 1.059899914788e-05, 1.6322e+01, 5.9510e-01, - 2DIAGNOSTIC, 14, -4.142640905471e-01, 7.260190764913e-06, 1.6948e+01, 6.2579e-01, - 2DIAGNOSTIC, 15, -4.142640905471e-01, 5.499477628720e-06, 1.7747e+01, 7.9919e-01, - 2DIAGNOSTIC, 16, -4.142640905471e-01, 4.122799101322e-06, 1.8411e+01, 6.6435e-01, - 2DIAGNOSTIC, 17, -4.142640905471e-01, 2.778775905397e-06, 1.9035e+01, 6.2390e-01, - 2DIAGNOSTIC, 18, -4.142640905471e-01, 1.767386469828e-06, 1.9805e+01, 7.7016e-01, - 2DIAGNOSTIC, 19, -4.142640905471e-01, 1.674357889593e-06, 2.0484e+01, 6.7849e-01, - 2DIAGNOSTIC, 20, -4.142640905471e-01, 1.590632802119e-06, 2.1190e+01, 7.0612e-01, - 2DIAGNOSTIC, 21, -4.142640905471e-01, 1.514882185007e-06, 2.1879e+01, 6.8899e-01, - 2DIAGNOSTIC, 22, -4.142640905471e-01, 1.446018525475e-06, 2.2477e+01, 5.9873e-01, - 2DIAGNOSTIC, 23, -4.142640905471e-01, 1.383143457614e-06, 2.3100e+01, 6.2290e-01, - 2DIAGNOSTIC, 24, -4.142640905471e-01, 1.325508353897e-06, 2.3708e+01, 6.0749e-01, - 2DIAGNOSTIC, 25, -4.142640905471e-01, 1.272484375384e-06, 2.4465e+01, 7.5704e-01, - 2DIAGNOSTIC, 26, -4.142640905471e-01, 1.223539433971e-06, 2.5144e+01, 6.7952e-01, - 2DIAGNOSTIC, 27, -4.142640905471e-01, 1.178220274574e-06, 2.5818e+01, 6.7393e-01, - 2DIAGNOSTIC, 28, -4.142640905471e-01, 1.136138396599e-06, 2.6483e+01, 6.6500e-01, - 2DIAGNOSTIC, 29, -4.142640905471e-01, 1.096958889106e-06, 2.7199e+01, 7.1613e-01, - 2DIAGNOSTIC, 30, -4.142640905471e-01, 1.060391498373e-06, 2.7875e+01, 6.7510e-01, - 2DIAGNOSTIC, 31, -4.142640905471e-01, 1.026183424936e-06, 2.8531e+01, 6.5615e-01, - Elapsed time (stage 1): 2.8920e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.265448502809e-01, 1.797693134862e+308, 2.5434e-01, 2.5434e-01, - 1DIAGNOSTIC, 2, -9.358216897454e-01, 1.797693134862e+308, 3.4808e-01, 9.3749e-02, - 1DIAGNOSTIC, 3, -9.430916260402e-01, 1.797693134862e+308, 4.4336e-01, 9.5274e-02, - 1DIAGNOSTIC, 4, -9.486009085082e-01, 1.797693134862e+308, 5.3974e-01, 9.6376e-02, - 1DIAGNOSTIC, 5, -9.532027747979e-01, 1.797693134862e+308, 6.3367e-01, 9.3938e-02, - 1DIAGNOSTIC, 6, -9.570335534486e-01, 1.797693134862e+308, 7.3262e-01, 9.8944e-02, - 1DIAGNOSTIC, 7, -9.600571595134e-01, 1.797693134862e+308, 8.2899e-01, 9.6378e-02, - 1DIAGNOSTIC, 8, -9.624709180595e-01, 1.797693134862e+308, 9.2835e-01, 9.9353e-02, - 1DIAGNOSTIC, 9, -9.625138907481e-01, 1.797693134862e+308, 1.0243e+00, 9.5955e-02, - 1DIAGNOSTIC, 10, -9.632904436453e-01, 2.382956693997e-03, 1.1253e+00, 1.0095e-01, - 1DIAGNOSTIC, 11, -9.628742962278e-01, 1.611582361386e-03, 1.2278e+00, 1.0259e-01, - 1DIAGNOSTIC, 12, -9.637202777182e-01, 1.074441795274e-03, 1.3265e+00, 9.8678e-02, - 1DIAGNOSTIC, 13, -9.631757774974e-01, 6.757332830277e-04, 1.4278e+00, 1.0126e-01, - 1DIAGNOSTIC, 14, -9.640403446883e-01, 4.082461952329e-04, 1.5257e+00, 9.7895e-02, - 1DIAGNOSTIC, 15, -9.635489719124e-01, 2.199866594653e-04, 1.6247e+00, 9.9050e-02, - 1DIAGNOSTIC, 16, -9.643839771755e-01, 1.214321316270e-04, 1.7539e+00, 1.2916e-01, - 1DIAGNOSTIC, 17, -9.638010379243e-01, 6.480657211562e-05, 1.8505e+00, 9.6641e-02, - 1DIAGNOSTIC, 18, -9.646082101327e-01, 6.223593666124e-05, 1.9550e+00, 1.0447e-01, - 1DIAGNOSTIC, 19, -9.639635576316e-01, 4.430240577968e-05, 2.0492e+00, 9.4213e-02, - 1DIAGNOSTIC, 20, -9.647402131391e-01, 4.776549499180e-05, 2.1495e+00, 1.0028e-01, - 1DIAGNOSTIC, 21, -9.641168143415e-01, 3.129593227270e-05, 2.2504e+00, 1.0092e-01, - 1DIAGNOSTIC, 22, -9.648641329879e-01, 3.555128834818e-05, 2.3602e+00, 1.0980e-01, - 1DIAGNOSTIC, 23, -9.642218488080e-01, 2.040035358589e-05, 2.4792e+00, 1.1900e-01, - 1DIAGNOSTIC, 24, -9.649587897754e-01, 2.497296271230e-05, 2.5829e+00, 1.0365e-01, - 1DIAGNOSTIC, 25, -9.643154234251e-01, 1.300004815034e-05, 2.6826e+00, 9.9751e-02, - 1DIAGNOSTIC, 26, -9.650306551989e-01, 1.894502797735e-05, 2.7856e+00, 1.0300e-01, - 1DIAGNOSTIC, 27, -9.643854473005e-01, 8.840636190409e-06, 2.8839e+00, 9.8269e-02, - 1DIAGNOSTIC, 28, -9.651604053436e-01, 1.589269047683e-05, 2.9898e+00, 1.0589e-01, - 1DIAGNOSTIC, 29, -9.644430289784e-01, 6.711853572858e-06, 3.0857e+00, 9.5972e-02, - 1DIAGNOSTIC, 30, -9.652684760025e-01, 1.383245846790e-05, 3.1820e+00, 9.6273e-02, - 1DIAGNOSTIC, 31, -9.646363041150e-01, 6.873964536400e-06, 3.2770e+00, 9.5028e-02, - 1DIAGNOSTIC, 32, -9.654437080102e-01, 1.453358664521e-05, 3.3729e+00, 9.5900e-02, - 1DIAGNOSTIC, 33, -9.647275109153e-01, 7.881070487506e-06, 3.4700e+00, 9.7100e-02, - 1DIAGNOSTIC, 34, -9.654617745349e-01, 1.413834503947e-05, 3.5747e+00, 1.0465e-01, - 1DIAGNOSTIC, 35, -9.647458518533e-01, 6.947039641051e-06, 3.6760e+00, 1.0133e-01, - 1DIAGNOSTIC, 36, -9.654723199137e-01, 1.174387102825e-05, 3.7830e+00, 1.0694e-01, - 1DIAGNOSTIC, 37, -9.647586772124e-01, 4.038393893589e-06, 3.8862e+00, 1.0320e-01, - 1DIAGNOSTIC, 38, -9.654787107924e-01, 8.414631685140e-06, 3.9854e+00, 9.9283e-02, - 1DIAGNOSTIC, 39, -9.647672838943e-01, 6.886435535494e-07, 4.0866e+00, 1.0116e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.280016051172e-01, 1.797693134862e+308, 4.9446e+00, 8.5802e-01, - 1DIAGNOSTIC, 2, -9.317790531517e-01, 1.797693134862e+308, 5.6100e+00, 6.6536e-01, - 1DIAGNOSTIC, 3, -9.360829965694e-01, 1.797693134862e+308, 6.2496e+00, 6.3966e-01, - 1DIAGNOSTIC, 4, -9.393286043052e-01, 1.797693134862e+308, 6.8846e+00, 6.3500e-01, - 1DIAGNOSTIC, 5, -9.418988842525e-01, 1.797693134862e+308, 7.5165e+00, 6.3184e-01, - 1DIAGNOSTIC, 6, -9.439321248255e-01, 1.797693134862e+308, 8.1770e+00, 6.6047e-01, - 1DIAGNOSTIC, 7, -9.456177948153e-01, 1.797693134862e+308, 8.8384e+00, 6.6145e-01, - 1DIAGNOSTIC, 8, -9.470491990275e-01, 1.797693134862e+308, 9.5028e+00, 6.6436e-01, - 1DIAGNOSTIC, 9, -9.483007867523e-01, 1.797693134862e+308, 1.0157e+01, 6.5451e-01, - 1DIAGNOSTIC, 10, -9.494052940873e-01, 1.416733646086e-03, 1.0821e+01, 6.6376e-01, - 1DIAGNOSTIC, 11, -9.502929772642e-01, 1.076321459434e-03, 1.1495e+01, 6.7349e-01, - 1DIAGNOSTIC, 12, -9.512371843382e-01, 8.135922760760e-04, 1.2158e+01, 6.6335e-01, - 1DIAGNOSTIC, 13, -9.519501190388e-01, 6.332279186282e-04, 1.2812e+01, 6.5442e-01, - 1DIAGNOSTIC, 14, -9.527117256180e-01, 5.067224194270e-04, 1.3453e+01, 6.4090e-01, - 1DIAGNOSTIC, 15, -9.533698897079e-01, 4.151515188174e-04, 1.4125e+01, 6.7180e-01, - 1DIAGNOSTIC, 16, -9.541036342012e-01, 3.486615433478e-04, 1.4790e+01, 6.6521e-01, - 1DIAGNOSTIC, 17, -9.547255473700e-01, 2.984024535374e-04, 1.5459e+01, 6.6857e-01, - 1DIAGNOSTIC, 18, -9.552904243041e-01, 2.592834982454e-04, 1.6125e+01, 6.6650e-01, - 1DIAGNOSTIC, 19, -9.558256442065e-01, 2.283692137891e-04, 1.6774e+01, 6.4830e-01, - 1DIAGNOSTIC, 20, -9.563245727929e-01, 2.033034252127e-04, 1.7419e+01, 6.4532e-01, - 1DIAGNOSTIC, 21, -9.567754939569e-01, 1.806628963734e-04, 1.8066e+01, 6.4719e-01, - 1DIAGNOSTIC, 22, -9.571844276942e-01, 1.616210717238e-04, 1.8709e+01, 6.4332e-01, - 1DIAGNOSTIC, 23, -9.576638084914e-01, 1.446171345049e-04, 1.9346e+01, 6.3659e-01, - 1DIAGNOSTIC, 24, -9.579941704768e-01, 1.290675985586e-04, 1.9999e+01, 6.5274e-01, - 1DIAGNOSTIC, 25, -9.583142431579e-01, 1.143344636075e-04, 2.0645e+01, 6.4577e-01, - 1DIAGNOSTIC, 26, -9.586208543324e-01, 1.019656385844e-04, 2.1301e+01, 6.5615e-01, - 1DIAGNOSTIC, 27, -9.589146295926e-01, 9.105259333975e-05, 2.1949e+01, 6.4814e-01, - 1DIAGNOSTIC, 28, -9.591953091546e-01, 8.135044428469e-05, 2.2582e+01, 6.3348e-01, - 1DIAGNOSTIC, 29, -9.594647741615e-01, 7.293929048469e-05, 2.3222e+01, 6.3993e-01, - 1DIAGNOSTIC, 30, -9.597191899094e-01, 6.573271639667e-05, 2.3875e+01, 6.5303e-01, - 1DIAGNOSTIC, 31, -9.599552373067e-01, 5.942367668266e-05, 2.4536e+01, 6.6028e-01, - 1DIAGNOSTIC, 32, -9.601782129228e-01, 5.377583871870e-05, 2.5206e+01, 6.7074e-01, - 1DIAGNOSTIC, 33, -9.603827835638e-01, 4.959504052712e-05, 2.5862e+01, 6.5615e-01, - 1DIAGNOSTIC, 34, -9.605615814290e-01, 4.545957242661e-05, 2.6526e+01, 6.6318e-01, - 1DIAGNOSTIC, 35, -9.607341437463e-01, 4.148361115720e-05, 2.7200e+01, 6.7410e-01, - 1DIAGNOSTIC, 36, -9.608699682190e-01, 3.749138393786e-05, 2.7873e+01, 6.7327e-01, - 1DIAGNOSTIC, 37, -9.610108375783e-01, 3.369805834182e-05, 2.8539e+01, 6.6580e-01, - 1DIAGNOSTIC, 38, -9.610875428098e-01, 2.974243885853e-05, 2.9205e+01, 6.6589e-01, - 1DIAGNOSTIC, 39, -9.612151757143e-01, 2.624631885514e-05, 2.9874e+01, 6.6929e-01, - 1DIAGNOSTIC, 40, -9.611713443957e-01, 2.203232471761e-05, 3.0541e+01, 6.6720e-01, - 1DIAGNOSTIC, 41, -9.609554288766e-01, 1.614316632339e-05, 3.1207e+01, 6.6566e-01, - 1DIAGNOSTIC, 42, -9.608876323403e-01, 1.019692130405e-05, 3.1870e+01, 6.6338e-01, - 1DIAGNOSTIC, 43, -9.607327917133e-01, 3.941441839503e-06, 3.2530e+01, 6.5965e-01, - 1DIAGNOSTIC, 44, -9.607238188524e-01, -1.205167799292e-06, 3.3198e+01, 6.6774e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.158861817291e-01, 1.797693134862e+308, 3.8782e+01, 5.5848e+00, - 1DIAGNOSTIC, 2, -9.186884783948e-01, 1.797693134862e+308, 4.4123e+01, 5.3409e+00, - 1DIAGNOSTIC, 3, -9.210704634163e-01, 1.797693134862e+308, 4.9534e+01, 5.4109e+00, - 1DIAGNOSTIC, 4, -9.231753427061e-01, 1.797693134862e+308, 5.4896e+01, 5.3620e+00, - 1DIAGNOSTIC, 5, -9.249969430471e-01, 1.797693134862e+308, 6.0224e+01, 5.3275e+00, - 1DIAGNOSTIC, 6, -9.265086405863e-01, 1.797693134862e+308, 6.5559e+01, 5.3350e+00, - 1DIAGNOSTIC, 7, -9.278767059758e-01, 1.797693134862e+308, 7.0927e+01, 5.3680e+00, - 1DIAGNOSTIC, 8, -9.291447792852e-01, 1.797693134862e+308, 7.6253e+01, 5.3264e+00, - 1DIAGNOSTIC, 9, -9.303484033877e-01, 1.797693134862e+308, 8.1628e+01, 5.3747e+00, - 1DIAGNOSTIC, 10, -9.314977851512e-01, 1.045214653707e-03, 8.6960e+01, 5.3321e+00, - 1DIAGNOSTIC, 11, -9.326329792491e-01, 8.473494056752e-04, 9.2350e+01, 5.3902e+00, - 1DIAGNOSTIC, 12, -9.336406504008e-01, 7.032131344076e-04, 9.7714e+01, 5.3642e+00, - 1DIAGNOSTIC, 13, -9.346330886555e-01, 5.967720885353e-04, 1.0308e+02, 5.3655e+00, - 1DIAGNOSTIC, 14, -9.356032005401e-01, 5.181219218264e-04, 1.0842e+02, 5.3444e+00, - 1DIAGNOSTIC, 15, -9.365650137641e-01, 4.590817073978e-04, 1.1381e+02, 5.3905e+00, - 1DIAGNOSTIC, 16, -9.375027586571e-01, 4.118327716191e-04, 1.1916e+02, 5.3463e+00, - 1DIAGNOSTIC, 17, -9.384094076024e-01, 3.728907081268e-04, 1.2452e+02, 5.3600e+00, - 1DIAGNOSTIC, 18, -9.392865170284e-01, 3.400409028554e-04, 1.2991e+02, 5.3911e+00, - 1DIAGNOSTIC, 19, -9.401080872802e-01, 3.114910318744e-04, 1.3527e+02, 5.3586e+00, - 1DIAGNOSTIC, 20, -9.408450280105e-01, 2.854419909656e-04, 1.4064e+02, 5.3738e+00, - 1DIAGNOSTIC, 21, -9.415009049711e-01, 2.611845635737e-04, 1.4602e+02, 5.3763e+00, - 1DIAGNOSTIC, 22, -9.420910791055e-01, 2.367940728498e-04, 1.5134e+02, 5.3234e+00, - 1DIAGNOSTIC, 23, -9.426255800632e-01, 2.125161224847e-04, 1.5671e+02, 5.3654e+00, - 1DIAGNOSTIC, 24, -9.431028522016e-01, 1.886320123136e-04, 1.6205e+02, 5.3363e+00, - 1DIAGNOSTIC, 25, -9.435327292684e-01, 1.658392724603e-04, 1.6742e+02, 5.3701e+00, - 1DIAGNOSTIC, 26, -9.439284411717e-01, 1.447714435936e-04, 1.7276e+02, 5.3453e+00, - 1DIAGNOSTIC, 27, -9.442853542294e-01, 1.258236629048e-04, 1.7813e+02, 5.3706e+00, - 1DIAGNOSTIC, 28, -9.445952231762e-01, 1.092171919819e-04, 1.8348e+02, 5.3446e+00, - 1DIAGNOSTIC, 29, -9.448696591538e-01, 9.491470295880e-05, 1.8885e+02, 5.3751e+00, - 1DIAGNOSTIC, 30, -9.451063008064e-01, 8.245181755849e-05, 1.9418e+02, 5.3276e+00, - 1DIAGNOSTIC, 31, -9.453204477769e-01, 7.152135166348e-05, 1.9955e+02, 5.3698e+00, - 1DIAGNOSTIC, 32, -9.455052335313e-01, 6.186373307916e-05, 2.0492e+02, 5.3737e+00, - 1DIAGNOSTIC, 33, -9.456742346061e-01, 5.342062146155e-05, 2.1030e+02, 5.3800e+00, - 1DIAGNOSTIC, 34, -9.458246557144e-01, 4.603738971783e-05, 2.1571e+02, 5.4110e+00, - 1DIAGNOSTIC, 35, -9.459644956183e-01, 3.967440714886e-05, 2.2109e+02, 5.3766e+00, - 1DIAGNOSTIC, 36, -9.460864468862e-01, 3.428951056663e-05, 2.2642e+02, 5.3316e+00, - 1DIAGNOSTIC, 37, -9.461996840119e-01, 2.982815569377e-05, 2.3180e+02, 5.3784e+00, - 1DIAGNOSTIC, 38, -9.463041047637e-01, 2.611081615704e-05, 2.3714e+02, 5.3441e+00, - 1DIAGNOSTIC, 39, -9.463988594337e-01, 2.301263646735e-05, 2.4252e+02, 5.3733e+00, - 1DIAGNOSTIC, 40, -9.464862837636e-01, 2.037875381468e-05, 2.4787e+02, 5.3482e+00, - 1DIAGNOSTIC, 41, -9.465676791125e-01, 1.816500680172e-05, 2.5321e+02, 5.3406e+00, - 1DIAGNOSTIC, 42, -9.466442975131e-01, 1.626004901753e-05, 2.5853e+02, 5.3257e+00, - 1DIAGNOSTIC, 43, -9.467153326707e-01, 1.463390025587e-05, 2.6388e+02, 5.3457e+00, - 1DIAGNOSTIC, 44, -9.467821393223e-01, 1.323059749395e-05, 2.6924e+02, 5.3580e+00, - 1DIAGNOSTIC, 45, -9.468466514785e-01, 1.205350599724e-05, 2.7459e+02, 5.3533e+00, - 1DIAGNOSTIC, 46, -9.469064773531e-01, 1.102384256230e-05, 2.7992e+02, 5.3348e+00, - 1DIAGNOSTIC, 47, -9.469597301246e-01, 1.010811529162e-05, 2.8533e+02, 5.4028e+00, - 1DIAGNOSTIC, 48, -9.470124566257e-01, 9.307277185074e-06, 2.9065e+02, 5.3269e+00, - 1DIAGNOSTIC, 49, -9.470617719280e-01, 8.590017226983e-06, 2.9603e+02, 5.3746e+00, - 1DIAGNOSTIC, 50, -9.471092097597e-01, 7.946467507017e-06, 3.0137e+02, 5.3415e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.120698657103e-01, 1.797693134862e+308, 3.4516e+02, 4.3786e+01, - 1DIAGNOSTIC, 2, -9.130445581749e-01, 1.797693134862e+308, 3.8834e+02, 4.3187e+01, - 1DIAGNOSTIC, 3, -9.141486467862e-01, 1.797693134862e+308, 4.3169e+02, 4.3350e+01, - 1DIAGNOSTIC, 4, -9.151799520456e-01, 1.797693134862e+308, 4.7508e+02, 4.3384e+01, - 1DIAGNOSTIC, 5, -9.160672967244e-01, 1.797693134862e+308, 5.1821e+02, 4.3135e+01, - 1DIAGNOSTIC, 6, -9.168491126977e-01, 1.797693134862e+308, 5.6138e+02, 4.3163e+01, - 1DIAGNOSTIC, 7, -9.175744864712e-01, 1.797693134862e+308, 6.0488e+02, 4.3503e+01, - 1DIAGNOSTIC, 8, -9.182888944764e-01, 1.797693134862e+308, 6.4808e+02, 4.3199e+01, - 1DIAGNOSTIC, 9, -9.190033025292e-01, 1.797693134862e+308, 6.9182e+02, 4.3738e+01, - 1DIAGNOSTIC, 10, -9.197625491608e-01, 5.321508729354e-04, 7.3549e+02, 4.3674e+01, - 1DIAGNOSTIC, 11, -9.203697669094e-01, 4.559144450121e-04, 7.7903e+02, 4.3536e+01, - 1DIAGNOSTIC, 12, -9.208611991631e-01, 3.891848279169e-04, 8.2335e+02, 4.4327e+01, - 1DIAGNOSTIC, 13, -9.212692472956e-01, 3.334755808033e-04, 8.6841e+02, 4.5054e+01, - 1DIAGNOSTIC, 14, -9.215299064987e-01, 2.838886655385e-04, 9.1297e+02, 4.4568e+01, - 1DIAGNOSTIC, 15, -9.217424275275e-01, 2.376435504274e-04, 9.5845e+02, 4.5479e+01, - 1DIAGNOSTIC, 16, -9.219386877302e-01, 1.943038360238e-04, 1.0037e+03, 4.5232e+01, - 1DIAGNOSTIC, 17, -9.221131390169e-01, 1.545732291831e-04, 1.0486e+03, 4.4882e+01, - 1DIAGNOSTIC, 18, -9.222586462560e-01, 1.197746430746e-04, 1.0939e+03, 4.5367e+01, - 1DIAGNOSTIC, 19, -9.223838136094e-01, 9.119329360739e-05, 1.1380e+03, 4.4107e+01, - 1DIAGNOSTIC, 20, -9.225001665646e-01, 7.056320248599e-05, 1.1818e+03, 4.3760e+01, - Elapsed time (stage 2): 1182 - - -Total elapsed time: 1233 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:47 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:47 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:55 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:58 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:58 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12792 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:10:59 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:01 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:02 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12842 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:02 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/anat/sub-PNC008_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:05 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:05 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12943 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:05 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 12948 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:05 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:50 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:52 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:52 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:54 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:54 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:56 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:56 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:57 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:11:58 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:00 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:01 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:01 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/surf/sub-PNC008_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:01 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:10 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02/sub-PNC008_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC008 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:21 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC008 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:21 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC008 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:21 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 13728 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:23 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:23 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc/sub-PNC008_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/xfm/sub-PNC008_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 13817 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:25 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:25 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC008_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 72.483 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/logs/proc_func_19-03-2024-21811.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:32 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC008 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-02/QC/sub-PNC008_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/11681_micapipe_proc-func_sub-PNC008_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC008* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 72.533 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC008_ses-02 -========================reprocessing without filter=================== -sub-PNC008_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC008 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC008 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC008 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC008 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:51 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:12:51 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-1_bold.nii.gz is 40.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:14:55 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:17:01 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:17:15 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.44 (mm) at sub-brick 40 -++ Max delta displ in automask = 1.24 (mm) at sub-brick 40 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:29:53 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:30:10 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-2_bold.nii.gz is 40.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:32:18 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:34:25 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC008/ses-03/func/sub-PNC008_ses-03_task-rest_echo-3_bold.nii.gz is 40.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:36:33 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.365 -2.043 2.228 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.9 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.348 -3.123 3.494 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.3 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:41:13 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:41:42 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55a3bb3aca50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 61.1548, -106.625] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a3bb223730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a3bb3c3350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55a3bb3b3600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [77.8093, 136.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a3bb3b5e40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a3bbbbff50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55a3bbbbe270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [110.102, 61.1548, -106.625] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a3bb3b2640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a3bc6ea1c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55a3bbbbda00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [77.8093, 136.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55a3bb3b9390) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55a3bcee4300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.335014891540e-01, 1.797693134862e+308, 5.1157e-02, 5.1156e-02, - 2DIAGNOSTIC, 2, -7.347107129196e-01, 1.797693134862e+308, 5.2604e-02, 1.4470e-03, - 2DIAGNOSTIC, 3, -7.373508915253e-01, 1.797693134862e+308, 5.4140e-02, 1.5361e-03, - 2DIAGNOSTIC, 4, -7.451432135280e-01, 1.797693134862e+308, 5.5658e-02, 1.5180e-03, - 2DIAGNOSTIC, 5, -7.608186218618e-01, 1.797693134862e+308, 5.7235e-02, 1.5769e-03, - 2DIAGNOSTIC, 6, -7.748527515459e-01, 1.797693134862e+308, 5.9771e-02, 2.5361e-03, - 2DIAGNOSTIC, 7, -7.851840548471e-01, 1.797693134862e+308, 6.2086e-02, 2.3148e-03, - 2DIAGNOSTIC, 8, -7.854823477053e-01, 1.797693134862e+308, 6.3671e-02, 1.5850e-03, - 2DIAGNOSTIC, 9, -7.897569444364e-01, 1.797693134862e+308, 6.5361e-02, 1.6899e-03, - 2DIAGNOSTIC, 10, -7.920467586194e-01, 6.009664452093e-03, 6.7262e-02, 1.9011e-03, - 2DIAGNOSTIC, 11, -7.956557070119e-01, 5.167643074198e-03, 6.9371e-02, 2.1091e-03, - 2DIAGNOSTIC, 12, -7.988535098025e-01, 4.144640219866e-03, 7.1218e-02, 1.8470e-03, - 2DIAGNOSTIC, 13, -8.046227041817e-01, 3.151601760007e-03, 7.3064e-02, 1.8461e-03, - 2DIAGNOSTIC, 14, -8.079684583306e-01, 2.305171198468e-03, 7.5435e-02, 2.3711e-03, - 2DIAGNOSTIC, 15, -8.087477843577e-01, 1.759953050511e-03, 7.7029e-02, 1.5941e-03, - 2DIAGNOSTIC, 16, -8.137904653767e-01, 1.554710334159e-03, 7.8924e-02, 1.8950e-03, - 2DIAGNOSTIC, 17, -8.164038443137e-01, 1.506829905169e-03, 8.0524e-02, 1.6000e-03, - 2DIAGNOSTIC, 18, -8.203350583855e-01, 1.407453400958e-03, 8.2284e-02, 1.7600e-03, - 2DIAGNOSTIC, 19, -8.221134539424e-01, 1.303222265856e-03, 8.5022e-02, 2.7380e-03, - 2DIAGNOSTIC, 20, -8.224213376740e-01, 1.136492954903e-03, 8.6545e-02, 1.5230e-03, - 2DIAGNOSTIC, 21, -8.231291255854e-01, 9.550004962231e-04, 8.8105e-02, 1.5600e-03, - 2DIAGNOSTIC, 22, -8.244184854703e-01, 7.721837165462e-04, 8.9680e-02, 1.5750e-03, - 2DIAGNOSTIC, 23, -8.244431100160e-01, 6.225805269549e-04, 9.2023e-02, 2.3429e-03, - 2DIAGNOSTIC, 24, -8.244554970745e-01, 4.788299712478e-04, 9.3584e-02, 1.5609e-03, - 2DIAGNOSTIC, 25, -8.244624626753e-01, 3.128808377571e-04, 9.5102e-02, 1.5180e-03, - 2DIAGNOSTIC, 26, -8.244774335008e-01, 2.001286248245e-04, 9.6651e-02, 1.5490e-03, - 2DIAGNOSTIC, 27, -8.244983494644e-01, 1.106358464346e-04, 9.8445e-02, 1.7941e-03, - 2DIAGNOSTIC, 28, -8.245447726393e-01, 6.750790848167e-05, 1.0047e-01, 2.0239e-03, - 2DIAGNOSTIC, 29, -8.265895537061e-01, 6.832400946934e-05, 1.0631e-01, 5.8410e-03, - 2DIAGNOSTIC, 30, -8.265895507956e-01, 6.564833501365e-05, 1.0782e-01, 1.5111e-03, - 2DIAGNOSTIC, 31, -8.265895515824e-01, 6.501913911355e-05, 1.0933e-01, 1.5121e-03, - 2DIAGNOSTIC, 32, -8.265895529127e-01, 7.301994607631e-05, 1.1086e-01, 1.5311e-03, - 2DIAGNOSTIC, 33, -8.265895551614e-01, 7.387094207592e-05, 1.1232e-01, 1.4579e-03, - 2DIAGNOSTIC, 34, -8.265895589622e-01, 6.752923178195e-05, 1.1381e-01, 1.4911e-03, - 2DIAGNOSTIC, 35, -8.265895653838e-01, 5.523895777024e-05, 1.1534e-01, 1.5249e-03, - 2DIAGNOSTIC, 36, -8.265895762272e-01, 3.896419398300e-05, 1.1683e-01, 1.4892e-03, - 2DIAGNOSTIC, 37, -8.265895945192e-01, 2.039596909139e-05, 1.1833e-01, 1.5020e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.444503729251e-01, 1.797693134862e+308, 1.6537e-01, 4.7045e-02, - 2DIAGNOSTIC, 2, -4.440337092359e-01, 1.797693134862e+308, 1.6790e-01, 2.5291e-03, - 2DIAGNOSTIC, 3, -4.451090691903e-01, 1.797693134862e+308, 1.7052e-01, 2.6190e-03, - 2DIAGNOSTIC, 4, -4.460548406381e-01, 1.797693134862e+308, 1.7300e-01, 2.4779e-03, - 2DIAGNOSTIC, 5, -4.473370051872e-01, 1.797693134862e+308, 1.7518e-01, 2.1770e-03, - 2DIAGNOSTIC, 6, -4.483458485082e-01, 1.797693134862e+308, 1.7820e-01, 3.0200e-03, - 2DIAGNOSTIC, 7, -4.490099844258e-01, 1.797693134862e+308, 1.8040e-01, 2.2011e-03, - 2DIAGNOSTIC, 8, -4.497990093103e-01, 1.797693134862e+308, 1.8308e-01, 2.6851e-03, - 2DIAGNOSTIC, 9, -4.524769996556e-01, 1.797693134862e+308, 1.8633e-01, 3.2430e-03, - 2DIAGNOSTIC, 10, -4.533101748691e-01, 1.340182076943e-03, 1.8930e-01, 2.9778e-03, - 2DIAGNOSTIC, 11, -4.548731634222e-01, 1.372015919521e-03, 1.9200e-01, 2.7001e-03, - 2DIAGNOSTIC, 12, -4.582314308635e-01, 1.429684125379e-03, 1.9456e-01, 2.5549e-03, - 2DIAGNOSTIC, 13, -4.653228191792e-01, 1.740108909599e-03, 1.9704e-01, 2.4831e-03, - 2DIAGNOSTIC, 14, -4.815449338619e-01, 2.603197909195e-03, 2.0014e-01, 3.1021e-03, - 2DIAGNOSTIC, 15, -4.834339036585e-01, 3.224139820492e-03, 2.0293e-01, 2.7831e-03, - 2DIAGNOSTIC, 16, -4.863783407334e-01, 3.630599089651e-03, 2.0539e-01, 2.4660e-03, - 2DIAGNOSTIC, 17, -5.014584549001e-01, 4.224325412150e-03, 2.0811e-01, 2.7189e-03, - 2DIAGNOSTIC, 18, -5.062432156855e-01, 4.525781920464e-03, 2.1245e-01, 4.3411e-03, - 2DIAGNOSTIC, 19, -5.065542352051e-01, 4.466339860770e-03, 2.1499e-01, 2.5380e-03, - 2DIAGNOSTIC, 20, -5.075092883991e-01, 4.063610135387e-03, 2.1759e-01, 2.5969e-03, - 2DIAGNOSTIC, 21, -5.089213472647e-01, 3.416674437605e-03, 2.2002e-01, 2.4281e-03, - 2DIAGNOSTIC, 22, -5.097815376242e-01, 2.623571119355e-03, 2.2242e-01, 2.4040e-03, - 2DIAGNOSTIC, 23, -5.117379608279e-01, 1.883196651503e-03, 2.2500e-01, 2.5761e-03, - 2DIAGNOSTIC, 24, -5.216669628601e-01, 1.690104211405e-03, 2.2792e-01, 2.9199e-03, - 2DIAGNOSTIC, 25, -5.281384260296e-01, 1.552497503401e-03, 2.3171e-01, 3.7949e-03, - 2DIAGNOSTIC, 26, -5.294096142290e-01, 1.367552047206e-03, 2.3438e-01, 2.6720e-03, - 2DIAGNOSTIC, 27, -5.300002060235e-01, 1.414112250047e-03, 2.3683e-01, 2.4509e-03, - 2DIAGNOSTIC, 28, -5.308335628475e-01, 1.443599565270e-03, 2.3927e-01, 2.4362e-03, - 2DIAGNOSTIC, 29, -5.348003634157e-01, 1.417465926624e-03, 2.4167e-01, 2.3999e-03, - 2DIAGNOSTIC, 30, -5.474690267844e-01, 1.519450133731e-03, 2.4403e-01, 2.3580e-03, - 2DIAGNOSTIC, 31, -5.869278023003e-01, 2.229194865246e-03, 2.4673e-01, 2.7049e-03, - 2DIAGNOSTIC, 32, -6.162115363603e-01, 3.200248442112e-03, 2.5073e-01, 4.0009e-03, - 2DIAGNOSTIC, 33, -6.177552222094e-01, 3.851000974278e-03, 2.5306e-01, 2.3279e-03, - 2DIAGNOSTIC, 34, -6.282618403807e-01, 4.441295995215e-03, 2.5537e-01, 2.3119e-03, - 2DIAGNOSTIC, 35, -6.409097445383e-01, 4.871721716704e-03, 2.5771e-01, 2.3372e-03, - 2DIAGNOSTIC, 36, -6.492648152787e-01, 4.944254610497e-03, 2.6026e-01, 2.5530e-03, - 2DIAGNOSTIC, 37, -6.511798468319e-01, 4.576939493298e-03, 2.6312e-01, 2.8529e-03, - 2DIAGNOSTIC, 38, -6.513002162265e-01, 3.826038268441e-03, 2.6571e-01, 2.5961e-03, - 2DIAGNOSTIC, 39, -6.512202304469e-01, 2.822960997045e-03, 2.6831e-01, 2.6000e-03, - 2DIAGNOSTIC, 40, -6.515117409607e-01, 1.777226278566e-03, 2.7086e-01, 2.5499e-03, - 2DIAGNOSTIC, 41, -6.514605528961e-01, 1.133900141974e-03, 2.7340e-01, 2.5392e-03, - 2DIAGNOSTIC, 42, -6.519024263056e-01, 8.036197731671e-04, 2.7594e-01, 2.5389e-03, - 2DIAGNOSTIC, 43, -6.525901233716e-01, 4.432054338535e-04, 2.7936e-01, 3.4211e-03, - 2DIAGNOSTIC, 44, -6.529296323580e-01, 1.887032309770e-04, 2.8252e-01, 3.1569e-03, - 2DIAGNOSTIC, 45, -6.529935608092e-01, 7.690719462184e-05, 2.8576e-01, 3.2361e-03, - 2DIAGNOSTIC, 46, -6.530017748790e-01, 5.892626657426e-05, 2.8871e-01, 2.9590e-03, - 2DIAGNOSTIC, 47, -6.530084374400e-01, 5.771244046349e-05, 2.9114e-01, 2.4300e-03, - 2DIAGNOSTIC, 48, -6.530196840792e-01, 5.246958519997e-05, 2.9351e-01, 2.3630e-03, - 2DIAGNOSTIC, 49, -6.530454854670e-01, 4.186551249035e-05, 2.9760e-01, 4.0939e-03, - 2DIAGNOSTIC, 50, -6.530461352675e-01, 3.102318319536e-05, 3.0069e-01, 3.0849e-03, - 2DIAGNOSTIC, 51, -6.530468423811e-01, 1.729489987226e-05, 3.0368e-01, 2.9910e-03, - 2DIAGNOSTIC, 52, -6.530481565095e-01, 6.844795405761e-06, 3.0654e-01, 2.8608e-03, - 2DIAGNOSTIC, 53, -6.530504840272e-01, 2.851687061198e-06, 3.0935e-01, 2.8121e-03, - 2DIAGNOSTIC, 54, -6.531458934412e-01, 2.917374551208e-06, 3.1558e-01, 6.2320e-03, - 2DIAGNOSTIC, 55, -6.531458943424e-01, 3.333000299331e-06, 3.1881e-01, 3.2251e-03, - 2DIAGNOSTIC, 56, -6.531458959574e-01, 3.565171976905e-06, 3.2170e-01, 2.8949e-03, - 2DIAGNOSTIC, 57, -6.531459014558e-01, 3.582375654371e-06, 3.2463e-01, 2.9280e-03, - 2DIAGNOSTIC, 58, -6.531459301234e-01, 3.405946692195e-06, 3.2746e-01, 2.8300e-03, - 2DIAGNOSTIC, 59, -6.531460260545e-01, 3.177876035893e-06, 3.3028e-01, 2.8198e-03, - 2DIAGNOSTIC, 60, -6.531462812226e-01, 2.718323550768e-06, 3.3319e-01, 2.9130e-03, - 2DIAGNOSTIC, 61, -6.531485663797e-01, 2.111080859454e-06, 3.3605e-01, 2.8551e-03, - 2DIAGNOSTIC, 62, -6.531501716322e-01, 1.412966925254e-06, 3.3921e-01, 3.1621e-03, - 2DIAGNOSTIC, 63, -6.532414470031e-01, 1.379343488889e-06, 3.4226e-01, 3.0510e-03, - 2DIAGNOSTIC, 64, -6.531503986861e-01, 1.283987431620e-06, 3.4542e-01, 3.1610e-03, - 2DIAGNOSTIC, 65, -6.532427302653e-01, 1.855883603141e-06, 3.4898e-01, 3.5601e-03, - 2DIAGNOSTIC, 66, -6.532435883152e-01, 2.272534030515e-06, 3.5818e-01, 9.1982e-03, - 2DIAGNOSTIC, 67, -6.532435882771e-01, 2.503608299870e-06, 3.6096e-01, 2.7771e-03, - 2DIAGNOSTIC, 68, -6.532435883673e-01, 2.540755828392e-06, 3.6374e-01, 2.7869e-03, - 2DIAGNOSTIC, 69, -6.532435885199e-01, 2.390352574325e-06, 3.6656e-01, 2.8181e-03, - 2DIAGNOSTIC, 70, -6.532435887778e-01, 2.068286527313e-06, 3.6942e-01, 2.8529e-03, - 2DIAGNOSTIC, 71, -6.532435892137e-01, 1.617016221214e-06, 3.7218e-01, 2.7640e-03, - 2DIAGNOSTIC, 72, -6.532435899504e-01, 1.068615473707e-06, 3.7500e-01, 2.8250e-03, - 2DIAGNOSTIC, 73, -6.532435911947e-01, 1.117723880659e-06, 3.7780e-01, 2.7950e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.816913370583e-01, 1.797693134862e+308, 4.4763e-01, 6.9833e-02, - 2DIAGNOSTIC, 2, -4.822407844527e-01, 1.797693134862e+308, 4.5848e-01, 1.0850e-02, - 2DIAGNOSTIC, 3, -4.830980293545e-01, 1.797693134862e+308, 4.6924e-01, 1.0753e-02, - 2DIAGNOSTIC, 4, -4.841518607038e-01, 1.797693134862e+308, 4.8018e-01, 1.0941e-02, - 2DIAGNOSTIC, 5, -4.855919068590e-01, 1.797693134862e+308, 4.9121e-01, 1.1038e-02, - 2DIAGNOSTIC, 6, -4.861249571265e-01, 1.797693134862e+308, 5.0195e-01, 1.0737e-02, - 2DIAGNOSTIC, 7, -4.881257311949e-01, 1.797693134862e+308, 5.1468e-01, 1.2726e-02, - 2DIAGNOSTIC, 8, -4.896429802791e-01, 1.797693134862e+308, 5.2634e-01, 1.1667e-02, - 2DIAGNOSTIC, 9, -4.901308460799e-01, 1.797693134862e+308, 5.4276e-01, 1.6413e-02, - 2DIAGNOSTIC, 10, -4.904732817688e-01, 1.301864512103e-03, 5.5937e-01, 1.6608e-02, - 2DIAGNOSTIC, 11, -4.904308576096e-01, 1.120944804176e-03, 5.7123e-01, 1.1860e-02, - 2DIAGNOSTIC, 12, -4.905208322631e-01, 9.005075456093e-04, 5.8317e-01, 1.1941e-02, - 2DIAGNOSTIC, 13, -4.907033144189e-01, 6.781990204208e-04, 5.9490e-01, 1.1735e-02, - 2DIAGNOSTIC, 14, -4.908817442256e-01, 4.769036583740e-04, 6.0673e-01, 1.1832e-02, - 2DIAGNOSTIC, 15, -4.910501488514e-01, 3.227644675320e-04, 6.2207e-01, 1.5333e-02, - 2DIAGNOSTIC, 16, -4.911478057908e-01, 1.804347342836e-04, 6.3577e-01, 1.3708e-02, - 2DIAGNOSTIC, 17, -4.911661683635e-01, 1.066037665500e-04, 6.4925e-01, 1.3478e-02, - 2DIAGNOSTIC, 18, -4.911629184557e-01, 7.995284653085e-05, 6.6267e-01, 1.3418e-02, - 2DIAGNOSTIC, 19, -4.911999921981e-01, 6.461287158752e-05, 6.7776e-01, 1.5088e-02, - 2DIAGNOSTIC, 20, -4.911984607944e-01, 5.490291750113e-05, 6.9114e-01, 1.3380e-02, - 2DIAGNOSTIC, 21, -4.911872948271e-01, 3.969113156108e-05, 7.0296e-01, 1.1825e-02, - 2DIAGNOSTIC, 22, -4.911854982285e-01, 2.463422053626e-05, 7.1592e-01, 1.2954e-02, - 2DIAGNOSTIC, 23, -4.912088285002e-01, 1.388202581447e-05, 7.2929e-01, 1.3377e-02, - 2DIAGNOSTIC, 24, -4.912137794897e-01, 7.183235218318e-06, 7.4134e-01, 1.2049e-02, - 2DIAGNOSTIC, 25, -4.912134171209e-01, 4.319145858300e-06, 7.5219e-01, 1.0849e-02, - 2DIAGNOSTIC, 26, -4.912367402984e-01, 4.109268296436e-06, 7.6243e-01, 1.0242e-02, - 2DIAGNOSTIC, 27, -4.912626257689e-01, 4.593763482927e-06, 7.7635e-01, 1.3915e-02, - 2DIAGNOSTIC, 28, -4.912703156949e-01, 4.769667899661e-06, 7.8688e-01, 1.0532e-02, - 2DIAGNOSTIC, 29, -4.912863529810e-01, 5.657953529324e-06, 7.9829e-01, 1.1412e-02, - 2DIAGNOSTIC, 30, -4.913108580472e-01, 6.512923208600e-06, 8.1123e-01, 1.2934e-02, - 2DIAGNOSTIC, 31, -4.912882698650e-01, 6.156075987883e-06, 8.2278e-01, 1.1558e-02, - 2DIAGNOSTIC, 32, -4.913083229788e-01, 5.667722446173e-06, 8.3471e-01, 1.1925e-02, - 2DIAGNOSTIC, 33, -4.913215935770e-01, 5.401179314107e-06, 8.4636e-01, 1.1650e-02, - 2DIAGNOSTIC, 34, -4.913243703344e-01, 4.858245135304e-06, 8.6438e-01, 1.8019e-02, - 2DIAGNOSTIC, 35, -4.913298729631e-01, 4.055749096035e-06, 8.7469e-01, 1.0309e-02, - 2DIAGNOSTIC, 36, -4.913277296464e-01, 3.339118579873e-06, 8.8812e-01, 1.3433e-02, - 2DIAGNOSTIC, 37, -4.913223595964e-01, 2.753485045956e-06, 8.9982e-01, 1.1700e-02, - 2DIAGNOSTIC, 38, -4.913090699789e-01, 1.923639085657e-06, 9.1053e-01, 1.0713e-02, - 2DIAGNOSTIC, 39, -4.912961407592e-01, 1.072197911439e-06, 9.2129e-01, 1.0759e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.112736399792e-01, 1.797693134862e+308, 1.1289e+00, 2.0761e-01, - Elapsed time (stage 0): 1.1576e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.662159009639e-01, 1.797693134862e+308, 3.1294e-02, 3.1294e-02, - 2DIAGNOSTIC, 2, -9.677087349493e-01, 1.797693134862e+308, 3.2386e-02, 1.0920e-03, - 2DIAGNOSTIC, 3, -9.704298924363e-01, 1.797693134862e+308, 3.3401e-02, 1.0149e-03, - 2DIAGNOSTIC, 4, -9.765363865042e-01, 1.797693134862e+308, 3.4694e-02, 1.2929e-03, - 2DIAGNOSTIC, 5, -9.872043683560e-01, 1.797693134862e+308, 3.5802e-02, 1.1079e-03, - 2DIAGNOSTIC, 6, -9.967942073634e-01, 1.797693134862e+308, 3.7084e-02, 1.2820e-03, - 2DIAGNOSTIC, 7, -1.009602027764e+00, 1.797693134862e+308, 3.8452e-02, 1.3678e-03, - 2DIAGNOSTIC, 8, -1.011116733810e+00, 1.797693134862e+308, 3.9824e-02, 1.3728e-03, - 2DIAGNOSTIC, 9, -1.018824003934e+00, 1.797693134862e+308, 4.1745e-02, 1.9202e-03, - 2DIAGNOSTIC, 10, -1.016103879534e+00, 4.017710415081e-03, 4.3280e-02, 1.5349e-03, - 2DIAGNOSTIC, 11, -1.014391766189e+00, 3.370210323435e-03, 4.4806e-02, 1.5261e-03, - 2DIAGNOSTIC, 12, -1.015745399853e+00, 2.599918266578e-03, 4.6168e-02, 1.3621e-03, - 2DIAGNOSTIC, 13, -1.018449700103e+00, 1.832584885716e-03, 4.7551e-02, 1.3831e-03, - 2DIAGNOSTIC, 14, -1.022163120742e+00, 1.206242754346e-03, 4.9035e-02, 1.4839e-03, - 2DIAGNOSTIC, 15, -1.022584623146e+00, 7.629996433718e-04, 5.1140e-02, 2.1050e-03, - 2DIAGNOSTIC, 16, -1.022656534770e+00, 4.758436451616e-04, 5.2518e-02, 1.3781e-03, - 2DIAGNOSTIC, 17, -1.023122026546e+00, 4.013749814032e-04, 5.3857e-02, 1.3390e-03, - 2DIAGNOSTIC, 18, -1.023727388044e+00, 3.262470411201e-04, 5.5140e-02, 1.2829e-03, - 2DIAGNOSTIC, 19, -1.024410224502e+00, 3.538391557419e-04, 5.6481e-02, 1.3411e-03, - 2DIAGNOSTIC, 20, -1.025680092957e+00, 3.266162230245e-04, 5.7914e-02, 1.4331e-03, - 2DIAGNOSTIC, 21, -1.030698321939e+00, 3.165379134756e-04, 5.9495e-02, 1.5810e-03, - 2DIAGNOSTIC, 22, -1.036489840029e+00, 3.674473685479e-04, 6.2207e-02, 2.7120e-03, - 2DIAGNOSTIC, 23, -1.036745784677e+00, 4.133790707364e-04, 6.3508e-02, 1.3011e-03, - 2DIAGNOSTIC, 24, -1.037500833548e+00, 4.705440769652e-04, 6.4870e-02, 1.3618e-03, - 2DIAGNOSTIC, 25, -1.038237912991e+00, 4.925255919402e-04, 6.6210e-02, 1.3399e-03, - 2DIAGNOSTIC, 26, -1.038749344313e+00, 4.716722762742e-04, 6.7582e-02, 1.3721e-03, - 2DIAGNOSTIC, 27, -1.039296548004e+00, 4.175998325404e-04, 6.8892e-02, 1.3099e-03, - 2DIAGNOSTIC, 28, -1.040472637651e+00, 3.465451886774e-04, 7.0530e-02, 1.6379e-03, - 2DIAGNOSTIC, 29, -1.040921245431e+00, 2.596273877941e-04, 7.2820e-02, 2.2900e-03, - 2DIAGNOSTIC, 30, -1.038161262361e+00, 1.396351663843e-04, 7.4417e-02, 1.5969e-03, - 2DIAGNOSTIC, 31, -1.037264924578e+00, 5.102114403487e-05, 7.5849e-02, 1.4322e-03, - 2DIAGNOSTIC, 32, -1.038513369395e+00, 2.469936711282e-05, 7.7787e-02, 1.9379e-03, - 2DIAGNOSTIC, 33, -1.040470002660e+00, 1.544815042907e-05, 8.0237e-02, 2.4500e-03, - 2DIAGNOSTIC, 34, -1.040853227411e+00, 1.419348638450e-05, 8.2259e-02, 2.0220e-03, - 2DIAGNOSTIC, 35, -1.041320381389e+00, 2.207355590388e-05, 8.3984e-02, 1.7250e-03, - 2DIAGNOSTIC, 36, -1.041646605960e+00, 3.435951280756e-05, 8.5999e-02, 2.0149e-03, - 2DIAGNOSTIC, 37, -1.041820485451e+00, 4.748733418476e-05, 8.9065e-02, 3.0661e-03, - 2DIAGNOSTIC, 38, -1.041843737009e+00, 6.356816853496e-05, 9.0576e-02, 1.5111e-03, - 2DIAGNOSTIC, 39, -1.041949807364e+00, 7.735695489668e-05, 9.2094e-02, 1.5180e-03, - 2DIAGNOSTIC, 40, -1.042055181351e+00, 6.514224033337e-05, 9.3644e-02, 1.5500e-03, - 2DIAGNOSTIC, 41, -1.042106889115e+00, 4.157365663186e-05, 9.5132e-02, 1.4880e-03, - 2DIAGNOSTIC, 42, -1.042219880842e+00, 2.394458682846e-05, 9.6666e-02, 1.5340e-03, - 2DIAGNOSTIC, 43, -1.042593041253e+00, 1.995464439361e-05, 9.8874e-02, 2.2080e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.627079530356e-01, 1.797693134862e+308, 1.4135e-01, 4.2473e-02, - 2DIAGNOSTIC, 2, -6.627024960615e-01, 1.797693134862e+308, 1.4396e-01, 2.6140e-03, - 2DIAGNOSTIC, 3, -6.645927302966e-01, 1.797693134862e+308, 1.4655e-01, 2.5899e-03, - 2DIAGNOSTIC, 4, -6.675176290356e-01, 1.797693134862e+308, 1.4953e-01, 2.9790e-03, - 2DIAGNOSTIC, 5, -6.711912065454e-01, 1.797693134862e+308, 1.5222e-01, 2.6939e-03, - 2DIAGNOSTIC, 6, -6.755200226678e-01, 1.797693134862e+308, 1.5481e-01, 2.5890e-03, - 2DIAGNOSTIC, 7, -6.802982216876e-01, 1.797693134862e+308, 1.5712e-01, 2.3038e-03, - 2DIAGNOSTIC, 8, -6.859729301334e-01, 1.797693134862e+308, 1.5977e-01, 2.6560e-03, - 2DIAGNOSTIC, 9, -6.958911069908e-01, 1.797693134862e+308, 1.6185e-01, 2.0750e-03, - 2DIAGNOSTIC, 10, -6.987142029582e-01, 3.645233650506e-03, 1.6421e-01, 2.3601e-03, - 2DIAGNOSTIC, 11, -7.017185155022e-01, 3.673583951629e-03, 1.6709e-01, 2.8870e-03, - 2DIAGNOSTIC, 12, -7.037430300022e-01, 3.439389106487e-03, 1.6961e-01, 2.5110e-03, - 2DIAGNOSTIC, 13, -7.053612403470e-01, 3.041577642296e-03, 1.7186e-01, 2.2559e-03, - 2DIAGNOSTIC, 14, -7.066692443363e-01, 2.547796424294e-03, 1.7415e-01, 2.2862e-03, - 2DIAGNOSTIC, 15, -7.074059715041e-01, 2.010111257075e-03, 1.7731e-01, 3.1650e-03, - 2DIAGNOSTIC, 16, -7.075403624808e-01, 1.474324115723e-03, 1.7981e-01, 2.4960e-03, - 2DIAGNOSTIC, 17, -7.078695881604e-01, 9.914478482357e-04, 1.8237e-01, 2.5570e-03, - 2DIAGNOSTIC, 18, -7.080117369275e-01, 6.001194132754e-04, 1.8543e-01, 3.0658e-03, - 2DIAGNOSTIC, 19, -7.079802640709e-01, 4.089251384926e-04, 1.8790e-01, 2.4698e-03, - 2DIAGNOSTIC, 20, -7.079611430145e-01, 2.562105803534e-04, 1.9013e-01, 2.2290e-03, - 2DIAGNOSTIC, 21, -7.078878713569e-01, 1.515740575436e-04, 1.9267e-01, 2.5401e-03, - 2DIAGNOSTIC, 22, -7.079345846071e-01, 8.082961986816e-05, 1.9489e-01, 2.2190e-03, - 2DIAGNOSTIC, 23, -7.079238806834e-01, 3.700602665003e-05, 1.9714e-01, 2.2471e-03, - 2DIAGNOSTIC, 24, -7.080100934151e-01, 1.711015866228e-05, 1.9937e-01, 2.2321e-03, - 2DIAGNOSTIC, 25, -7.080220717137e-01, 9.630306039857e-06, 2.0158e-01, 2.2101e-03, - 2DIAGNOSTIC, 26, -7.080673752565e-01, 4.674676511392e-06, 2.0414e-01, 2.5580e-03, - 2DIAGNOSTIC, 27, -7.080867282310e-01, 4.968220567010e-06, 2.0644e-01, 2.3050e-03, - 2DIAGNOSTIC, 28, -7.081708152290e-01, 8.173976252412e-06, 2.0898e-01, 2.5420e-03, - 2DIAGNOSTIC, 29, -7.084143889578e-01, 1.344151851547e-05, 2.1241e-01, 3.4261e-03, - 2DIAGNOSTIC, 30, -7.084359438977e-01, 1.716809509209e-05, 2.1493e-01, 2.5201e-03, - 2DIAGNOSTIC, 31, -7.083965212998e-01, 1.768269448524e-05, 2.1724e-01, 2.3110e-03, - 2DIAGNOSTIC, 32, -7.085515113898e-01, 1.923340189611e-05, 2.2047e-01, 3.2330e-03, - 2DIAGNOSTIC, 33, -7.085778575109e-01, 1.904837678859e-05, 2.2315e-01, 2.6779e-03, - 2DIAGNOSTIC, 34, -7.083572352786e-01, 1.550897044024e-05, 2.2581e-01, 2.6581e-03, - 2DIAGNOSTIC, 35, -7.082953588995e-01, 1.030858791956e-05, 2.2812e-01, 2.3081e-03, - 2DIAGNOSTIC, 36, -7.082470309356e-01, 4.519396615898e-06, 2.3040e-01, 2.2840e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.467030664208e-01, 1.797693134862e+308, 2.9191e-01, 6.1512e-02, - 2DIAGNOSTIC, 2, -5.469886325723e-01, 1.797693134862e+308, 3.0373e-01, 1.1816e-02, - 2DIAGNOSTIC, 3, -5.474420201139e-01, 1.797693134862e+308, 3.1530e-01, 1.1569e-02, - 2DIAGNOSTIC, 4, -5.479650681188e-01, 1.797693134862e+308, 3.2702e-01, 1.1717e-02, - 2DIAGNOSTIC, 5, -5.488059805589e-01, 1.797693134862e+308, 3.3997e-01, 1.2958e-02, - 2DIAGNOSTIC, 6, -5.511214911535e-01, 1.797693134862e+308, 3.5369e-01, 1.3713e-02, - 2DIAGNOSTIC, 7, -5.521369282430e-01, 1.797693134862e+308, 3.6650e-01, 1.2818e-02, - 2DIAGNOSTIC, 8, -5.531115339133e-01, 1.797693134862e+308, 3.7927e-01, 1.2761e-02, - 2DIAGNOSTIC, 9, -5.543751039910e-01, 1.797693134862e+308, 3.9341e-01, 1.4149e-02, - 2DIAGNOSTIC, 10, -5.563829876058e-01, 1.161880354867e-03, 4.0776e-01, 1.4349e-02, - 2DIAGNOSTIC, 11, -5.570351171984e-01, 1.153204754452e-03, 4.2299e-01, 1.5229e-02, - 2DIAGNOSTIC, 12, -5.573326235160e-01, 1.068086255352e-03, 4.3447e-01, 1.1477e-02, - 2DIAGNOSTIC, 13, -5.574045825198e-01, 9.224454697678e-04, 4.5678e-01, 2.2313e-02, - 2DIAGNOSTIC, 14, -5.574084940873e-01, 7.336582472489e-04, 4.6847e-01, 1.1691e-02, - 2DIAGNOSTIC, 15, -5.574228050359e-01, 5.303101507257e-04, 4.8230e-01, 1.3825e-02, - 2DIAGNOSTIC, 16, -5.574326706176e-01, 3.783553158963e-04, 4.9569e-01, 1.3391e-02, - 2DIAGNOSTIC, 17, -5.574395322102e-01, 2.410367898483e-04, 5.0907e-01, 1.3383e-02, - 2DIAGNOSTIC, 18, -5.574348058402e-01, 1.245616476326e-04, 5.2283e-01, 1.3756e-02, - 2DIAGNOSTIC, 19, -5.574459013440e-01, 4.227448303654e-05, 5.3529e-01, 1.2461e-02, - 2DIAGNOSTIC, 20, -5.574500700463e-01, 1.574180404521e-05, 5.4959e-01, 1.4303e-02, - 2DIAGNOSTIC, 21, -5.574614513851e-01, 6.447028614701e-06, 5.6188e-01, 1.2292e-02, - 2DIAGNOSTIC, 22, -5.574615234612e-01, 4.431573859903e-06, 5.7557e-01, 1.3687e-02, - 2DIAGNOSTIC, 23, -5.574762634396e-01, 4.255976745228e-06, 5.8930e-01, 1.3730e-02, - 2DIAGNOSTIC, 24, -5.574818828626e-01, 4.017282866642e-06, 6.0149e-01, 1.2188e-02, - 2DIAGNOSTIC, 25, -5.574892113161e-01, 3.980759054750e-06, 6.1531e-01, 1.3824e-02, - 2DIAGNOSTIC, 26, -5.574959364070e-01, 4.016299033585e-06, 6.2724e-01, 1.1928e-02, - 2DIAGNOSTIC, 27, -5.575055479631e-01, 4.103523069794e-06, 6.4034e-01, 1.3103e-02, - 2DIAGNOSTIC, 28, -5.575303321875e-01, 4.268172004156e-06, 6.5228e-01, 1.1940e-02, - 2DIAGNOSTIC, 29, -5.575756416049e-01, 5.110699943890e-06, 6.6607e-01, 1.3790e-02, - 2DIAGNOSTIC, 30, -5.575930623148e-01, 5.867531490629e-06, 6.8088e-01, 1.4807e-02, - 2DIAGNOSTIC, 31, -5.575823496964e-01, 6.140778946596e-06, 6.9530e-01, 1.4422e-02, - 2DIAGNOSTIC, 32, -5.575664146518e-01, 5.670803599707e-06, 7.0832e-01, 1.3019e-02, - 2DIAGNOSTIC, 33, -5.575663600542e-01, 5.014368335055e-06, 7.2723e-01, 1.8911e-02, - 2DIAGNOSTIC, 34, -5.575777894850e-01, 4.250178030178e-06, 7.4160e-01, 1.4362e-02, - 2DIAGNOSTIC, 35, -5.575784981562e-01, 3.322741551907e-06, 7.5643e-01, 1.4830e-02, - 2DIAGNOSTIC, 36, -5.575795100844e-01, 2.342739594766e-06, 7.7197e-01, 1.5540e-02, - 2DIAGNOSTIC, 37, -5.575715038679e-01, 1.307777846463e-06, 7.8585e-01, 1.3885e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.664100109579e-01, 1.797693134862e+308, 9.7352e-01, 1.8767e-01, - Elapsed time (stage 1): 9.9574e-01 - - -Total elapsed time: 2.1538e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:41:46 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 50 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 70 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 89.58% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 89.58% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[13960 1522 2731 1314 3268 3774 478 1099 1206 10003 1102 472 - 610 486 356 3568 164 1796 210 260 536 721 666 161 - 0 267 0 0 0 0 0 0 0 0 0 0 - 0 0 0 0 0 0 0 0 0 0 0 0 - 0 0] -[107392 25314 36155 60292 21188 28518 21471 16868 20508 17499 - 12965 10909 12961 8945 9179 9606 8603 5431 5839 7304 - 3847 5389 5764 3765 3133 3110 2119 2368 2667 2397 - 1713 1821 1787 3889 1835 1249 922 1322 939 1624 - 1423 1252 622 498 1483 882 902 358 417 777] -[ 1089 0 727 5203 0 167 0 0 0 0 381 0 - 1329 1282 328 937 1289 321 0 147 0 0 187 0 - 6339 1409 141 875 0 0 0 4261 7814 223 9851 13499 - 0 0 140 256 767 0 680 1438 0 244 0 603 - 5202 145] -[ 20839 3003 8687 1056 377 7142 12864 4827 1500 1453 - 11470 2937 13877 13820 3406 13965 4088 4062 2176 956 - 1583 2461 1509 7861 0 15105 3089 675 5842 7275 - 4233 838 2946 16510 509 112005 7223 2520 6434 9882 - 3444 1992 8484 160 0 2203 817 8203 2488 2437] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:50:49 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:50:54 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:35 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:35 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:35 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:45 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:48 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC008 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:54:59 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:55:23 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:57:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:57:09 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:58:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:58:27 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55ff9a8a0d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.2585, 136.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ff9a717730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbfb60d1010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55ff9a8a4020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.604, -107.075] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ff9a8aa0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbfb2a12010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55ff9a8ba840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [78.2585, 136.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ff9a8a6890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbfadd3e010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55ff9a8be3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.604, -107.075] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55ff9a8ad130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fbfaa67f010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.531184477380e-01, 1.797693134862e+308, 2.4285e-01, 2.4285e-01, - 2DIAGNOSTIC, 2, -4.542730048473e-01, 1.797693134862e+308, 2.4415e-01, 1.3039e-03, - 2DIAGNOSTIC, 3, -4.549520854723e-01, 1.797693134862e+308, 2.4549e-01, 1.3440e-03, - 2DIAGNOSTIC, 4, -4.573812298165e-01, 1.797693134862e+308, 2.4683e-01, 1.3330e-03, - 2DIAGNOSTIC, 5, -4.613532315873e-01, 1.797693134862e+308, 2.4817e-01, 1.3449e-03, - 2DIAGNOSTIC, 6, -4.654104315835e-01, 1.797693134862e+308, 2.4951e-01, 1.3380e-03, - 2DIAGNOSTIC, 7, -4.721921238414e-01, 1.797693134862e+308, 2.5134e-01, 1.8330e-03, - 2DIAGNOSTIC, 8, -4.722985013588e-01, 1.797693134862e+308, 2.5280e-01, 1.4539e-03, - 2DIAGNOSTIC, 9, -4.740179465561e-01, 1.797693134862e+308, 2.5448e-01, 1.6818e-03, - 2DIAGNOSTIC, 10, -4.752966055091e-01, 3.628532128655e-03, 2.5619e-01, 1.7161e-03, - 2DIAGNOSTIC, 11, -4.851531547966e-01, 3.693945033962e-03, 2.5811e-01, 1.9181e-03, - 2DIAGNOSTIC, 12, -4.931795507464e-01, 3.862871671697e-03, 2.5982e-01, 1.7121e-03, - 2DIAGNOSTIC, 13, -4.958598757569e-01, 3.808278003280e-03, 2.6169e-01, 1.8649e-03, - 2DIAGNOSTIC, 14, -4.974652316363e-01, 3.598384526182e-03, 2.6476e-01, 3.0732e-03, - 2DIAGNOSTIC, 15, -4.996021565135e-01, 3.334707495546e-03, 2.6662e-01, 1.8620e-03, - 2DIAGNOSTIC, 16, -5.001457975221e-01, 2.959052461325e-03, 2.6824e-01, 1.6179e-03, - 2DIAGNOSTIC, 17, -5.017230632409e-01, 2.646897594488e-03, 2.7005e-01, 1.8120e-03, - 2DIAGNOSTIC, 18, -5.021896557249e-01, 2.147613794159e-03, 2.7194e-01, 1.8899e-03, - 2DIAGNOSTIC, 19, -5.021936737008e-01, 1.564408012695e-03, 2.7355e-01, 1.6031e-03, - 2DIAGNOSTIC, 20, -5.022139360544e-01, 9.310109281633e-04, 2.7513e-01, 1.5850e-03, - 2DIAGNOSTIC, 21, -5.027843832663e-01, 5.615343958930e-04, 2.7698e-01, 1.8461e-03, - 2DIAGNOSTIC, 22, -5.034523991324e-01, 4.055256989013e-04, 2.7878e-01, 1.8041e-03, - 2DIAGNOSTIC, 23, -5.059011038867e-01, 3.558463499517e-04, 2.8061e-01, 1.8241e-03, - 2DIAGNOSTIC, 24, -5.045662598730e-01, 2.819253451992e-04, 2.8264e-01, 2.0359e-03, - 2DIAGNOSTIC, 25, -5.051089530288e-01, 2.525997580444e-04, 2.8448e-01, 1.8342e-03, - 2DIAGNOSTIC, 26, -5.050393591573e-01, 2.116976379649e-04, 2.8606e-01, 1.5838e-03, - 2DIAGNOSTIC, 27, -5.053030385500e-01, 1.928665122940e-04, 2.8763e-01, 1.5700e-03, - 2DIAGNOSTIC, 28, -5.067498474645e-01, 1.965712425289e-04, 2.8947e-01, 1.8389e-03, - 2DIAGNOSTIC, 29, -5.087665434773e-01, 2.218727560201e-04, 2.9132e-01, 1.8489e-03, - 2DIAGNOSTIC, 30, -5.136576342565e-01, 3.194170628534e-04, 2.9321e-01, 1.8902e-03, - 2DIAGNOSTIC, 31, -5.354814558646e-01, 7.960204982408e-04, 2.9608e-01, 2.8689e-03, - 2DIAGNOSTIC, 32, -5.377060283826e-01, 1.205949153649e-03, 2.9854e-01, 2.4581e-03, - 2DIAGNOSTIC, 33, -5.383899271658e-01, 1.534487827075e-03, 3.0041e-01, 1.8699e-03, - 2DIAGNOSTIC, 34, -5.403834106613e-01, 1.712676009527e-03, 3.0197e-01, 1.5659e-03, - 2DIAGNOSTIC, 35, -5.428326253413e-01, 1.763701393786e-03, 3.0356e-01, 1.5862e-03, - 2DIAGNOSTIC, 36, -5.451196543486e-01, 1.673257011025e-03, 3.0514e-01, 1.5838e-03, - 2DIAGNOSTIC, 37, -5.512665524679e-01, 1.526587034913e-03, 3.0672e-01, 1.5838e-03, - 2DIAGNOSTIC, 38, -5.581841338445e-01, 1.371276404559e-03, 3.0834e-01, 1.6160e-03, - 2DIAGNOSTIC, 39, -5.633679624749e-01, 1.199140083156e-03, 3.1044e-01, 2.0981e-03, - 2DIAGNOSTIC, 40, -5.687815694085e-01, 1.059097186862e-03, 3.1293e-01, 2.4881e-03, - 2DIAGNOSTIC, 41, -5.697073710690e-01, 1.136883960316e-03, 3.1473e-01, 1.8051e-03, - 2DIAGNOSTIC, 42, -5.710385172049e-01, 1.150119670808e-03, 3.1631e-01, 1.5790e-03, - 2DIAGNOSTIC, 43, -5.712297783971e-01, 1.063396538579e-03, 3.1812e-01, 1.8108e-03, - 2DIAGNOSTIC, 44, -5.715889236452e-01, 9.089307685825e-04, 3.1969e-01, 1.5681e-03, - 2DIAGNOSTIC, 45, -5.723585410152e-01, 7.154906992494e-04, 3.2126e-01, 1.5750e-03, - 2DIAGNOSTIC, 46, -5.744022686461e-01, 5.145832746993e-04, 3.2306e-01, 1.7970e-03, - 2DIAGNOSTIC, 47, -5.752514928245e-01, 3.550408235998e-04, 3.2589e-01, 2.8269e-03, - 2DIAGNOSTIC, 48, -5.755224291547e-01, 2.508867914845e-04, 3.2747e-01, 1.5860e-03, - 2DIAGNOSTIC, 49, -5.760939174933e-01, 1.910735870537e-04, 3.2904e-01, 1.5700e-03, - 2DIAGNOSTIC, 50, -5.768863988025e-01, 1.835081056426e-04, 3.3108e-01, 2.0370e-03, - 2DIAGNOSTIC, 51, -5.772237991184e-01, 1.714604796590e-04, 3.3285e-01, 1.7669e-03, - 2DIAGNOSTIC, 52, -5.769509681074e-01, 1.546750153417e-04, 3.3440e-01, 1.5481e-03, - 2DIAGNOSTIC, 53, -5.767599809858e-01, 1.243310579818e-04, 3.3596e-01, 1.5640e-03, - 2DIAGNOSTIC, 54, -5.771067501005e-01, 9.059636826540e-05, 3.3751e-01, 1.5519e-03, - 2DIAGNOSTIC, 55, -5.775121076721e-01, 6.042986441420e-05, 3.3909e-01, 1.5781e-03, - 2DIAGNOSTIC, 56, -5.779661623404e-01, 4.960484125733e-05, 3.4091e-01, 1.8189e-03, - 2DIAGNOSTIC, 57, -5.788722558056e-01, 5.129052393817e-05, 3.4250e-01, 1.5950e-03, - 2DIAGNOSTIC, 58, -5.795532894378e-01, 5.679948410005e-05, 3.4430e-01, 1.8001e-03, - 2DIAGNOSTIC, 59, -5.812349478932e-01, 7.701285655098e-05, 3.4687e-01, 2.5630e-03, - 2DIAGNOSTIC, 60, -5.812426446584e-01, 9.586698842659e-05, 3.4847e-01, 1.6029e-03, - 2DIAGNOSTIC, 61, -5.814565779903e-01, 1.100072619461e-04, 3.5029e-01, 1.8172e-03, - 2DIAGNOSTIC, 62, -5.815845211248e-01, 1.120344208776e-04, 3.5212e-01, 1.8320e-03, - 2DIAGNOSTIC, 63, -5.812394795028e-01, 9.855194328358e-05, 3.5363e-01, 1.5080e-03, - 2DIAGNOSTIC, 64, -5.809294000071e-01, 7.635379710490e-05, 3.5544e-01, 1.8151e-03, - 2DIAGNOSTIC, 65, -5.806544581056e-01, 4.875286169531e-05, 3.5702e-01, 1.5740e-03, - 2DIAGNOSTIC, 66, -5.809803748411e-01, 2.376040501461e-05, 3.5859e-01, 1.5740e-03, - 2DIAGNOSTIC, 67, -5.810260618072e-01, 4.764349854712e-06, 3.6016e-01, 1.5719e-03, - 2DIAGNOSTIC, 68, -5.824475098745e-01, 2.101209105248e-06, 3.6273e-01, 2.5711e-03, - 2DIAGNOSTIC, 69, -5.826354554658e-01, 1.358786092094e-05, 3.6436e-01, 1.6289e-03, - 2DIAGNOSTIC, 70, -5.828150427987e-01, 2.492861855910e-05, 3.6620e-01, 1.8382e-03, - 2DIAGNOSTIC, 71, -5.842802443376e-01, 4.611946200078e-05, 3.6785e-01, 1.6470e-03, - 2DIAGNOSTIC, 72, -5.847503138902e-01, 6.635718649265e-05, 3.6999e-01, 2.1379e-03, - 2DIAGNOSTIC, 73, -5.858407735313e-01, 8.498950606050e-05, 3.7205e-01, 2.0649e-03, - 2DIAGNOSTIC, 74, -5.868096938328e-01, 9.963838355100e-05, 3.7365e-01, 1.5941e-03, - 2DIAGNOSTIC, 75, -5.870052857315e-01, 1.037314374487e-04, 3.7550e-01, 1.8508e-03, - 2DIAGNOSTIC, 76, -5.878244103656e-01, 1.057910985547e-04, 3.7737e-01, 1.8759e-03, - 2DIAGNOSTIC, 77, -5.874393058558e-01, 9.491793789575e-05, 3.7924e-01, 1.8711e-03, - 2DIAGNOSTIC, 78, -5.871069365212e-01, 8.271428043478e-05, 3.8085e-01, 1.6038e-03, - 2DIAGNOSTIC, 79, -5.871853182148e-01, 6.479252436382e-05, 3.8268e-01, 1.8380e-03, - 2DIAGNOSTIC, 80, -5.872380037982e-01, 4.239921588969e-05, 3.8430e-01, 1.6110e-03, - 2DIAGNOSTIC, 81, -5.873655816737e-01, 2.683061780896e-05, 3.8606e-01, 1.7631e-03, - 2DIAGNOSTIC, 82, -5.884274100181e-01, 1.881280318394e-05, 3.8763e-01, 1.5759e-03, - 2DIAGNOSTIC, 83, -5.880278225677e-01, 1.337018514638e-05, 3.9037e-01, 2.7380e-03, - 2DIAGNOSTIC, 84, -5.880393642982e-01, 1.306149131557e-05, 3.9218e-01, 1.8110e-03, - 2DIAGNOSTIC, 85, -5.880748613263e-01, 1.281566518111e-05, 3.9402e-01, 1.8361e-03, - 2DIAGNOSTIC, 86, -5.881070605841e-01, 1.650427684913e-05, 3.9553e-01, 1.5090e-03, - 2DIAGNOSTIC, 87, -5.876780100619e-01, 1.363732346715e-05, 3.9710e-01, 1.5750e-03, - 2DIAGNOSTIC, 88, -5.877088755913e-01, 7.875128258337e-06, 3.9893e-01, 1.8220e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.687264557775e-01, 1.797693134862e+308, 6.3802e-01, 2.3910e-01, - 2DIAGNOSTIC, 2, -4.682114567315e-01, 1.797693134862e+308, 6.4016e-01, 2.1431e-03, - 2DIAGNOSTIC, 3, -4.698191168017e-01, 1.797693134862e+308, 6.4225e-01, 2.0871e-03, - 2DIAGNOSTIC, 4, -4.718938457240e-01, 1.797693134862e+308, 6.4436e-01, 2.1081e-03, - 2DIAGNOSTIC, 5, -4.748218255258e-01, 1.797693134862e+308, 6.4683e-01, 2.4719e-03, - 2DIAGNOSTIC, 6, -4.768385517325e-01, 1.797693134862e+308, 6.4898e-01, 2.1451e-03, - 2DIAGNOSTIC, 7, -4.797982386242e-01, 1.797693134862e+308, 6.5113e-01, 2.1510e-03, - 2DIAGNOSTIC, 8, -4.888570452936e-01, 1.797693134862e+308, 6.5396e-01, 2.8369e-03, - 2DIAGNOSTIC, 9, -4.997438275058e-01, 1.797693134862e+308, 6.5643e-01, 2.4672e-03, - 2DIAGNOSTIC, 10, -5.029662772459e-01, 4.689609523174e-03, 6.5880e-01, 2.3649e-03, - 2DIAGNOSTIC, 11, -5.077068547031e-01, 5.090824210166e-03, 6.6144e-01, 2.6419e-03, - 2DIAGNOSTIC, 12, -5.140585468524e-01, 5.247966401484e-03, 6.6409e-01, 2.6519e-03, - 2DIAGNOSTIC, 13, -5.198778159174e-01, 5.224401115755e-03, 6.6675e-01, 2.6560e-03, - 2DIAGNOSTIC, 14, -5.241447757749e-01, 4.981320674643e-03, 6.6938e-01, 2.6309e-03, - 2DIAGNOSTIC, 15, -5.285651337399e-01, 4.602484362036e-03, 6.7164e-01, 2.2669e-03, - 2DIAGNOSTIC, 16, -5.294261600592e-01, 3.960794214706e-03, 6.7423e-01, 2.5828e-03, - 2DIAGNOSTIC, 17, -5.295327229600e-01, 3.135335025872e-03, 6.7712e-01, 2.8889e-03, - 2DIAGNOSTIC, 18, -5.303979678142e-01, 2.424389565253e-03, 6.7969e-01, 2.5709e-03, - 2DIAGNOSTIC, 19, -5.309042057942e-01, 1.907583181950e-03, 6.8226e-01, 2.5759e-03, - 2DIAGNOSTIC, 20, -5.320043963670e-01, 1.389236107986e-03, 6.8487e-01, 2.6031e-03, - 2DIAGNOSTIC, 21, -5.326282128433e-01, 9.358720068108e-04, 6.8718e-01, 2.3141e-03, - 2DIAGNOSTIC, 22, -5.352775731099e-01, 6.677551380451e-04, 6.8977e-01, 2.5871e-03, - 2DIAGNOSTIC, 23, -5.372366449796e-01, 5.487578256939e-04, 6.9207e-01, 2.3000e-03, - 2DIAGNOSTIC, 24, -5.445493278494e-01, 6.552688643787e-04, 6.9614e-01, 4.0770e-03, - 2DIAGNOSTIC, 25, -5.467785664279e-01, 8.357258785327e-04, 6.9881e-01, 2.6689e-03, - 2DIAGNOSTIC, 26, -5.468665995979e-01, 9.443764940436e-04, 7.0142e-01, 2.6050e-03, - 2DIAGNOSTIC, 27, -5.472040825556e-01, 9.667486057720e-04, 7.0380e-01, 2.3849e-03, - 2DIAGNOSTIC, 28, -5.478564702372e-01, 9.258413312806e-04, 7.0609e-01, 2.2829e-03, - 2DIAGNOSTIC, 29, -5.482987498916e-01, 8.163040147990e-04, 7.0857e-01, 2.4831e-03, - 2DIAGNOSTIC, 30, -5.489747497610e-01, 6.698458165229e-04, 7.1076e-01, 2.1889e-03, - 2DIAGNOSTIC, 31, -5.494856670101e-01, 4.912738909213e-04, 7.1294e-01, 2.1830e-03, - 2DIAGNOSTIC, 32, -5.507678234308e-01, 3.465696241983e-04, 7.1545e-01, 2.5089e-03, - 2DIAGNOSTIC, 33, -5.509336865702e-01, 2.101371008910e-04, 7.1766e-01, 2.2080e-03, - 2DIAGNOSTIC, 34, -5.534302563040e-01, 2.191699250017e-04, 7.1987e-01, 2.2140e-03, - 2DIAGNOSTIC, 35, -5.556174335184e-01, 2.749350642822e-04, 7.2302e-01, 3.1459e-03, - 2DIAGNOSTIC, 36, -5.567493702904e-01, 3.192105784381e-04, 7.2518e-01, 2.1651e-03, - 2DIAGNOSTIC, 37, -5.587516885311e-01, 3.651364224334e-04, 7.2738e-01, 2.1930e-03, - 2DIAGNOSTIC, 38, -5.629731361805e-01, 4.430028820418e-04, 7.2986e-01, 2.4822e-03, - 2DIAGNOSTIC, 39, -5.632205725490e-01, 4.824111426022e-04, 7.3240e-01, 2.5389e-03, - 2DIAGNOSTIC, 40, -5.679946626303e-01, 5.477270234176e-04, 7.3495e-01, 2.5570e-03, - 2DIAGNOSTIC, 41, -5.693854319986e-01, 5.812515970756e-04, 7.3714e-01, 2.1870e-03, - 2DIAGNOSTIC, 42, -5.813632278656e-01, 7.275227333967e-04, 7.3967e-01, 2.5332e-03, - 2DIAGNOSTIC, 43, -5.861486724041e-01, 8.542167260073e-04, 7.4220e-01, 2.5249e-03, - 2DIAGNOSTIC, 44, -5.879520331120e-01, 9.450811425834e-04, 7.4451e-01, 2.3141e-03, - 2DIAGNOSTIC, 45, -5.951744908355e-01, 1.054727782349e-03, 7.4722e-01, 2.7111e-03, - 2DIAGNOSTIC, 46, -6.066542505245e-01, 1.201524501209e-03, 7.4999e-01, 2.7699e-03, - 2DIAGNOSTIC, 47, -6.196875643441e-01, 1.390175347322e-03, 7.5336e-01, 3.3681e-03, - 2DIAGNOSTIC, 48, -6.358003745215e-01, 1.657973720420e-03, 7.5564e-01, 2.2769e-03, - 2DIAGNOSTIC, 49, -6.455562721823e-01, 1.860152825428e-03, 7.5817e-01, 2.5280e-03, - 2DIAGNOSTIC, 50, -6.461934010110e-01, 1.933256477134e-03, 7.6065e-01, 2.4860e-03, - 2DIAGNOSTIC, 51, -6.480820224524e-01, 1.850077002082e-03, 7.6313e-01, 2.4750e-03, - 2DIAGNOSTIC, 52, -6.489303706447e-01, 1.720031319572e-03, 7.6528e-01, 2.1470e-03, - 2DIAGNOSTIC, 53, -6.529771099256e-01, 1.516264615121e-03, 7.6774e-01, 2.4691e-03, - 2DIAGNOSTIC, 54, -6.538399945430e-01, 1.200398981281e-03, 7.7017e-01, 2.4250e-03, - 2DIAGNOSTIC, 55, -6.546754874197e-01, 8.593419447054e-04, 7.7259e-01, 2.4171e-03, - 2DIAGNOSTIC, 56, -6.549910159238e-01, 5.583951535185e-04, 7.7642e-01, 3.8321e-03, - 2DIAGNOSTIC, 57, -6.549332540571e-01, 3.296188762872e-04, 7.7890e-01, 2.4781e-03, - 2DIAGNOSTIC, 58, -6.553848669991e-01, 2.214888759172e-04, 7.8165e-01, 2.7540e-03, - 2DIAGNOSTIC, 59, -6.554816289485e-01, 1.811182689145e-04, 7.8448e-01, 2.8279e-03, - 2DIAGNOSTIC, 60, -6.553910533244e-01, 1.296687083187e-04, 7.8687e-01, 2.3870e-03, - 2DIAGNOSTIC, 61, -6.553880002185e-01, 8.376102779316e-05, 7.8931e-01, 2.4431e-03, - 2DIAGNOSTIC, 62, -6.555742323649e-01, 3.924114789842e-05, 7.9169e-01, 2.3839e-03, - 2DIAGNOSTIC, 63, -6.554771776696e-01, 2.396309836070e-05, 7.9406e-01, 2.3720e-03, - 2DIAGNOSTIC, 64, -6.553875522414e-01, 1.289876481857e-05, 7.9618e-01, 2.1138e-03, - 2DIAGNOSTIC, 65, -6.559124581243e-01, 1.153418700954e-05, 7.9855e-01, 2.3730e-03, - 2DIAGNOSTIC, 66, -6.563853538064e-01, 1.505243975565e-05, 8.0062e-01, 2.0700e-03, - 2DIAGNOSTIC, 67, -6.567884490956e-01, 1.943819345028e-05, 8.0328e-01, 2.6631e-03, - 2DIAGNOSTIC, 68, -6.569588946679e-01, 2.640321540872e-05, 8.0559e-01, 2.3091e-03, - 2DIAGNOSTIC, 69, -6.567265983577e-01, 2.977024718202e-05, 8.0765e-01, 2.0561e-03, - 2DIAGNOSTIC, 70, -6.565291369229e-01, 2.821910939629e-05, 8.0972e-01, 2.0680e-03, - 2DIAGNOSTIC, 71, -6.566708363115e-01, 2.491958548636e-05, 8.1237e-01, 2.6519e-03, - 2DIAGNOSTIC, 72, -6.570982434408e-01, 2.351022173775e-05, 8.1470e-01, 2.3298e-03, - 2DIAGNOSTIC, 73, -6.569657785513e-01, 1.837917911860e-05, 8.1674e-01, 2.0359e-03, - 2DIAGNOSTIC, 74, -6.570135224543e-01, 1.148798550891e-05, 8.1936e-01, 2.6278e-03, - 2DIAGNOSTIC, 75, -6.572205856764e-01, 8.537974879607e-06, 8.2170e-01, 2.3401e-03, - 2DIAGNOSTIC, 76, -6.570912791963e-01, 6.955604651845e-06, 8.2379e-01, 2.0840e-03, - 2DIAGNOSTIC, 77, -6.569771158620e-01, 6.556046502489e-06, 8.2623e-01, 2.4471e-03, - 2DIAGNOSTIC, 78, -6.572563481835e-01, 8.466707366043e-06, 8.2891e-01, 2.6779e-03, - 2DIAGNOSTIC, 79, -6.574623437363e-01, 9.399779043132e-06, 8.3120e-01, 2.2860e-03, - 2DIAGNOSTIC, 80, -6.575429159328e-01, 8.681346987886e-06, 8.3345e-01, 2.2550e-03, - 2DIAGNOSTIC, 81, -6.579795945158e-01, 1.061340981088e-05, 8.3592e-01, 2.4691e-03, - 2DIAGNOSTIC, 82, -6.577912587701e-01, 1.292921782514e-05, 8.3842e-01, 2.4991e-03, - 2DIAGNOSTIC, 83, -6.578743381973e-01, 1.372355637764e-05, 8.4121e-01, 2.7852e-03, - 2DIAGNOSTIC, 84, -6.576281760200e-01, 1.200547738933e-05, 8.4613e-01, 4.9241e-03, - 2DIAGNOSTIC, 85, -6.577854617929e-01, 1.132781658946e-05, 8.4875e-01, 2.6238e-03, - 2DIAGNOSTIC, 86, -6.576274664632e-01, 7.988079072678e-06, 8.5106e-01, 2.3079e-03, - 2DIAGNOSTIC, 87, -6.574717988710e-01, 2.507021115299e-06, 8.5334e-01, 2.2781e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.112569572549e-01, 1.797693134862e+308, 1.1260e+00, 2.7269e-01, - 2DIAGNOSTIC, 2, -5.115502028160e-01, 1.797693134862e+308, 1.1393e+00, 1.3219e-02, - 2DIAGNOSTIC, 3, -5.117854376711e-01, 1.797693134862e+308, 1.1530e+00, 1.3752e-02, - 2DIAGNOSTIC, 4, -5.123121751664e-01, 1.797693134862e+308, 1.1667e+00, 1.3702e-02, - 2DIAGNOSTIC, 5, -5.127017962806e-01, 1.797693134862e+308, 1.1808e+00, 1.4065e-02, - 2DIAGNOSTIC, 6, -5.133267406607e-01, 1.797693134862e+308, 1.1976e+00, 1.6786e-02, - 2DIAGNOSTIC, 7, -5.144334726200e-01, 1.797693134862e+308, 1.2200e+00, 2.2478e-02, - 2DIAGNOSTIC, 8, -5.145472118180e-01, 1.797693134862e+308, 1.2335e+00, 1.3469e-02, - 2DIAGNOSTIC, 9, -5.153209318032e-01, 1.797693134862e+308, 1.2469e+00, 1.3416e-02, - 2DIAGNOSTIC, 10, -5.178178250925e-01, 7.164636897322e-04, 1.2618e+00, 1.4875e-02, - 2DIAGNOSTIC, 11, -5.182808565395e-01, 7.648943308562e-04, 1.2787e+00, 1.6936e-02, - 2DIAGNOSTIC, 12, -5.182725723104e-01, 7.506828776473e-04, 1.2910e+00, 1.2284e-02, - 2DIAGNOSTIC, 13, -5.186039964916e-01, 6.967977182163e-04, 1.3050e+00, 1.3987e-02, - 2DIAGNOSTIC, 14, -5.186460380781e-01, 6.096417829453e-04, 1.3189e+00, 1.3945e-02, - 2DIAGNOSTIC, 15, -5.188763000757e-01, 4.998250701490e-04, 1.3329e+00, 1.3926e-02, - 2DIAGNOSTIC, 16, -5.194385296954e-01, 3.978690735782e-04, 1.3468e+00, 1.3960e-02, - 2DIAGNOSTIC, 17, -5.198342693355e-01, 3.212778522509e-04, 1.3631e+00, 1.6309e-02, - 2DIAGNOSTIC, 18, -5.198551597363e-01, 2.281621482027e-04, 1.3756e+00, 1.2409e-02, - 2DIAGNOSTIC, 19, -5.203960994232e-01, 1.604267556848e-04, 1.3900e+00, 1.4496e-02, - 2DIAGNOSTIC, 20, -5.204734595800e-01, 1.549831020524e-04, 1.4050e+00, 1.4931e-02, - 2DIAGNOSTIC, 21, -5.205406605478e-01, 1.496094940904e-04, 1.4194e+00, 1.4471e-02, - 2DIAGNOSTIC, 22, -5.206625095050e-01, 1.335867435268e-04, 1.4356e+00, 1.6174e-02, - 2DIAGNOSTIC, 23, -5.207176838783e-01, 1.159798724142e-04, 1.4498e+00, 1.4141e-02, - 2DIAGNOSTIC, 24, -5.206808153816e-01, 8.918822872921e-05, 1.4626e+00, 1.2801e-02, - 2DIAGNOSTIC, 25, -5.208449076796e-01, 6.473373245998e-05, 1.4788e+00, 1.6189e-02, - 2DIAGNOSTIC, 26, -5.208620928579e-01, 4.827085859455e-05, 1.4943e+00, 1.5516e-02, - 2DIAGNOSTIC, 27, -5.208603859360e-01, 3.673334499714e-05, 1.5081e+00, 1.3812e-02, - 2DIAGNOSTIC, 28, -5.208684695862e-01, 2.300958188889e-05, 1.5202e+00, 1.2071e-02, - 2DIAGNOSTIC, 29, -5.208764414907e-01, 1.857123105874e-05, 1.5344e+00, 1.4217e-02, - 2DIAGNOSTIC, 30, -5.208900089510e-01, 1.439851788083e-05, 1.5485e+00, 1.4151e-02, - 2DIAGNOSTIC, 31, -5.209360542982e-01, 1.115974856929e-05, 1.5628e+00, 1.4257e-02, - 2DIAGNOSTIC, 32, -5.209276958084e-01, 9.103208140245e-06, 1.5768e+00, 1.4012e-02, - 2DIAGNOSTIC, 33, -5.209203018854e-01, 7.267024164544e-06, 1.5891e+00, 1.2316e-02, - 2DIAGNOSTIC, 34, -5.209474561605e-01, 4.722262144097e-06, 1.6032e+00, 1.4115e-02, - 2DIAGNOSTIC, 35, -5.209579102178e-01, 4.670604844000e-06, 1.6172e+00, 1.4014e-02, - 2DIAGNOSTIC, 36, -5.209504732450e-01, 4.403741251543e-06, 1.6317e+00, 1.4454e-02, - 2DIAGNOSTIC, 37, -5.209411966555e-01, 3.666868911463e-06, 1.6500e+00, 1.8347e-02, - 2DIAGNOSTIC, 38, -5.209296417506e-01, 2.667637704241e-06, 1.6650e+00, 1.4946e-02, - 2DIAGNOSTIC, 39, -5.209028569897e-01, 1.276644500538e-06, 1.6776e+00, 1.2664e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.384694279359e-01, 1.797693134862e+308, 2.0930e+00, 4.1533e-01, - 2DIAGNOSTIC, 2, -4.387562712201e-01, 1.797693134862e+308, 2.1817e+00, 8.8683e-02, - 2DIAGNOSTIC, 3, -4.391185463940e-01, 1.797693134862e+308, 2.2712e+00, 8.9568e-02, - 2DIAGNOSTIC, 4, -4.394768685477e-01, 1.797693134862e+308, 2.3611e+00, 8.9904e-02, - 2DIAGNOSTIC, 5, -4.399816031986e-01, 1.797693134862e+308, 2.4492e+00, 8.8090e-02, - 2DIAGNOSTIC, 6, -4.409377660844e-01, 1.797693134862e+308, 2.5496e+00, 1.0042e-01, - 2DIAGNOSTIC, 7, -4.417866145125e-01, 1.797693134862e+308, 2.6744e+00, 1.2474e-01, - 2DIAGNOSTIC, 8, -4.418524295780e-01, 1.797693134862e+308, 2.7649e+00, 9.0553e-02, - 2DIAGNOSTIC, 9, -4.419218031523e-01, 1.797693134862e+308, 2.8487e+00, 8.3781e-02, - 2DIAGNOSTIC, 10, -4.421409165528e-01, 6.221777763956e-04, 2.9327e+00, 8.3973e-02, - 2DIAGNOSTIC, 11, -4.422767972308e-01, 5.242678489528e-04, 3.0412e+00, 1.0854e-01, - 2DIAGNOSTIC, 12, -4.423733790909e-01, 4.157299720154e-04, 3.1566e+00, 1.1534e-01, - 2DIAGNOSTIC, 13, -4.424041472410e-01, 3.066096820115e-04, 3.2372e+00, 8.0636e-02, - 2DIAGNOSTIC, 14, -4.424933016950e-01, 2.066183211878e-04, 3.3247e+00, 8.7490e-02, - 2DIAGNOSTIC, 15, -4.425273363198e-01, 1.235825515738e-04, 3.4084e+00, 8.3667e-02, - 2DIAGNOSTIC, 16, -4.425383393335e-01, 7.774354838595e-05, 3.5113e+00, 1.0289e-01, - 2DIAGNOSTIC, 17, -4.425766738054e-01, 6.402132926540e-05, 3.6007e+00, 8.9412e-02, - 2DIAGNOSTIC, 18, -4.426301815729e-01, 5.040087340633e-05, 3.6986e+00, 9.7931e-02, - 2DIAGNOSTIC, 19, -4.427639873270e-01, 4.040350051449e-05, 3.7965e+00, 9.7863e-02, - 2DIAGNOSTIC, 20, -4.428257854297e-01, 3.666767562159e-05, 3.8946e+00, 9.8148e-02, - 2DIAGNOSTIC, 21, -4.428848860651e-01, 3.597674920110e-05, 3.9839e+00, 8.9270e-02, - 2DIAGNOSTIC, 22, -4.429739252175e-01, 3.759345628194e-05, 4.0946e+00, 1.1075e-01, - 2DIAGNOSTIC, 23, -4.430476268499e-01, 3.848878605181e-05, 4.1903e+00, 9.5707e-02, - 2DIAGNOSTIC, 24, -4.430535849025e-01, 3.830164605093e-05, 4.2917e+00, 1.0134e-01, - 2DIAGNOSTIC, 25, -4.430560621385e-01, 3.563418616933e-05, 4.3888e+00, 9.7158e-02, - 2DIAGNOSTIC, 26, -4.430668604603e-01, 3.051445120540e-05, 4.4870e+00, 9.8131e-02, - 2DIAGNOSTIC, 27, -4.430660669691e-01, 2.388472708052e-05, 4.6026e+00, 1.1562e-01, - 2DIAGNOSTIC, 28, -4.430688764203e-01, 1.680083916339e-05, 4.7059e+00, 1.0334e-01, - 2DIAGNOSTIC, 29, -4.430697933582e-01, 1.171710625537e-05, 4.8175e+00, 1.1154e-01, - 2DIAGNOSTIC, 30, -4.430686160866e-01, 7.278647615204e-06, 4.9137e+00, 9.6183e-02, - 2DIAGNOSTIC, 31, -4.430673748291e-01, 3.704344626897e-06, 4.9978e+00, 8.4168e-02, - 2DIAGNOSTIC, 32, -4.430662491493e-01, 1.826402379668e-06, 5.0926e+00, 9.4799e-02, - 2DIAGNOSTIC, 33, -4.430665181759e-01, 1.424498757480e-06, 5.1878e+00, 9.5182e-02, - 2DIAGNOSTIC, 34, -4.430653822201e-01, 1.093614824619e-06, 5.2744e+00, 8.6552e-02, - Elapsed time (stage 0): 5.4195e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.129755253401e-01, 1.797693134862e+308, 2.0883e-01, 2.0882e-01, - 2DIAGNOSTIC, 2, -7.149970991871e-01, 1.797693134862e+308, 2.1013e-01, 1.3011e-03, - 2DIAGNOSTIC, 3, -7.179268418379e-01, 1.797693134862e+308, 2.1138e-01, 1.2569e-03, - 2DIAGNOSTIC, 4, -7.228329699580e-01, 1.797693134862e+308, 2.1267e-01, 1.2848e-03, - 2DIAGNOSTIC, 5, -7.318408719558e-01, 1.797693134862e+308, 2.1400e-01, 1.3289e-03, - 2DIAGNOSTIC, 6, -7.455662652656e-01, 1.797693134862e+308, 2.1525e-01, 1.2572e-03, - 2DIAGNOSTIC, 7, -7.789503427708e-01, 1.797693134862e+308, 2.1680e-01, 1.5440e-03, - 2DIAGNOSTIC, 8, -7.960021650986e-01, 1.797693134862e+308, 2.1804e-01, 1.2431e-03, - 2DIAGNOSTIC, 9, -8.086000392505e-01, 1.797693134862e+308, 2.1959e-01, 1.5481e-03, - 2DIAGNOSTIC, 10, -8.277445107892e-01, 1.052639904547e-02, 2.2204e-01, 2.4531e-03, - 2DIAGNOSTIC, 11, -8.338135848702e-01, 1.051749296973e-02, 2.2350e-01, 1.4620e-03, - 2DIAGNOSTIC, 12, -8.361295443549e-01, 9.696813006628e-03, 2.2552e-01, 2.0199e-03, - 2DIAGNOSTIC, 13, -8.374515072492e-01, 8.263475572061e-03, 2.2728e-01, 1.7571e-03, - 2DIAGNOSTIC, 14, -8.370042384825e-01, 6.425878792668e-03, 2.2895e-01, 1.6720e-03, - 2DIAGNOSTIC, 15, -8.373922324511e-01, 4.493198314884e-03, 2.3062e-01, 1.6670e-03, - 2DIAGNOSTIC, 16, -8.377248747095e-01, 2.709099731624e-03, 2.3234e-01, 1.7202e-03, - 2DIAGNOSTIC, 17, -8.375937706845e-01, 1.601910889122e-03, 2.3380e-01, 1.4629e-03, - 2DIAGNOSTIC, 18, -8.374760265561e-01, 8.143285905986e-04, 2.3527e-01, 1.4699e-03, - 2DIAGNOSTIC, 19, -8.373596689529e-01, 2.661047712293e-04, 2.3707e-01, 1.7991e-03, - 2DIAGNOSTIC, 20, -8.372237002519e-01, 8.789925479129e-05, 2.3885e-01, 1.7741e-03, - 2DIAGNOSTIC, 21, -8.371387703957e-01, 1.985337171402e-05, 2.4057e-01, 1.7231e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.155178112263e-01, 1.797693134862e+308, 4.5463e-01, 2.1406e-01, - 2DIAGNOSTIC, 2, -7.148232357537e-01, 1.797693134862e+308, 4.5725e-01, 2.6138e-03, - 2DIAGNOSTIC, 3, -7.159130338629e-01, 1.797693134862e+308, 4.5970e-01, 2.4519e-03, - 2DIAGNOSTIC, 4, -7.176312473516e-01, 1.797693134862e+308, 4.6243e-01, 2.7361e-03, - 2DIAGNOSTIC, 5, -7.200345589728e-01, 1.797693134862e+308, 4.6551e-01, 3.0758e-03, - 2DIAGNOSTIC, 6, -7.201931341386e-01, 1.797693134862e+308, 4.6778e-01, 2.2740e-03, - 2DIAGNOSTIC, 7, -7.202433933550e-01, 1.797693134862e+308, 4.7008e-01, 2.2981e-03, - 2DIAGNOSTIC, 8, -7.201320599291e-01, 1.797693134862e+308, 4.7250e-01, 2.4202e-03, - 2DIAGNOSTIC, 9, -7.199728652826e-01, 1.797693134862e+308, 4.7493e-01, 2.4300e-03, - 2DIAGNOSTIC, 10, -7.200243117890e-01, 5.258794918782e-04, 4.7764e-01, 2.7099e-03, - 2DIAGNOSTIC, 11, -7.199955256673e-01, 3.790601199866e-04, 4.7991e-01, 2.2671e-03, - 2DIAGNOSTIC, 12, -7.198766387159e-01, 1.971007399824e-04, 4.8214e-01, 2.2302e-03, - 2DIAGNOSTIC, 13, -7.201935024114e-01, 6.805405654385e-05, 4.8465e-01, 2.5129e-03, - 2DIAGNOSTIC, 14, -7.205772569516e-01, 8.776105261607e-06, 4.8687e-01, 2.2180e-03, - 2DIAGNOSTIC, 15, -7.208156417065e-01, 2.603938665557e-05, 4.8908e-01, 2.2120e-03, - 2DIAGNOSTIC, 16, -7.208691704773e-01, 4.414446967300e-05, 4.9164e-01, 2.5589e-03, - 2DIAGNOSTIC, 17, -7.211582851423e-01, 6.436809773110e-05, 4.9415e-01, 2.5089e-03, - 2DIAGNOSTIC, 18, -7.211274300100e-01, 7.332854153383e-05, 4.9669e-01, 2.5380e-03, - 2DIAGNOSTIC, 19, -7.208017159395e-01, 6.448647784722e-05, 4.9923e-01, 2.5442e-03, - 2DIAGNOSTIC, 20, -7.205386401625e-01, 4.676359189437e-05, 5.0208e-01, 2.8441e-03, - 2DIAGNOSTIC, 21, -7.202880631384e-01, 2.152709428811e-05, 5.0552e-01, 3.4449e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.821690242196e-01, 1.797693134862e+308, 7.4653e-01, 2.4101e-01, - 2DIAGNOSTIC, 2, -5.831449997550e-01, 1.797693134862e+308, 7.5968e-01, 1.3158e-02, - 2DIAGNOSTIC, 3, -5.845309744080e-01, 1.797693134862e+308, 7.7272e-01, 1.3036e-02, - 2DIAGNOSTIC, 4, -5.861409485777e-01, 1.797693134862e+308, 7.8702e-01, 1.4302e-02, - 2DIAGNOSTIC, 5, -5.879145910176e-01, 1.797693134862e+308, 8.0014e-01, 1.3113e-02, - 2DIAGNOSTIC, 6, -5.893879380118e-01, 1.797693134862e+308, 8.1718e-01, 1.7040e-02, - 2DIAGNOSTIC, 7, -5.910523191418e-01, 1.797693134862e+308, 8.3332e-01, 1.6149e-02, - 2DIAGNOSTIC, 8, -5.916480596923e-01, 1.797693134862e+308, 8.4675e-01, 1.3428e-02, - 2DIAGNOSTIC, 9, -5.920381939055e-01, 1.797693134862e+308, 8.6560e-01, 1.8849e-02, - 2DIAGNOSTIC, 10, -5.923626673830e-01, 1.235454484425e-03, 8.7785e-01, 1.2252e-02, - 2DIAGNOSTIC, 11, -5.928682245263e-01, 1.000580757643e-03, 8.9036e-01, 1.2503e-02, - 2DIAGNOSTIC, 12, -5.934295252583e-01, 7.762247199661e-04, 9.0573e-01, 1.5371e-02, - 2DIAGNOSTIC, 13, -5.944960794590e-01, 6.068747508799e-04, 9.2719e-01, 2.1467e-02, - 2DIAGNOSTIC, 14, -5.948600213145e-01, 4.738999383540e-04, 9.4051e-01, 1.3315e-02, - 2DIAGNOSTIC, 15, -5.951951148806e-01, 3.831551107074e-04, 9.5357e-01, 1.3063e-02, - 2DIAGNOSTIC, 16, -5.956066223014e-01, 3.245995602714e-04, 9.6701e-01, 1.3442e-02, - 2DIAGNOSTIC, 17, -5.959372639705e-01, 2.990701543204e-04, 9.8411e-01, 1.7092e-02, - 2DIAGNOSTIC, 18, -5.961066219024e-01, 2.688730934911e-04, 9.9727e-01, 1.3162e-02, - 2DIAGNOSTIC, 19, -5.965664507117e-01, 2.386417517483e-04, 1.0145e+00, 1.7279e-02, - 2DIAGNOSTIC, 20, -5.970551265479e-01, 2.088617999977e-04, 1.0396e+00, 2.5052e-02, - 2DIAGNOSTIC, 21, -5.970970863293e-01, 1.748782930681e-04, 1.0536e+00, 1.3975e-02, - 2DIAGNOSTIC, 22, -5.972813514666e-01, 1.437392215710e-04, 1.0667e+00, 1.3091e-02, - 2DIAGNOSTIC, 23, -5.975261690505e-01, 1.293286069832e-04, 1.0804e+00, 1.3710e-02, - 2DIAGNOSTIC, 24, -5.976550723774e-01, 1.137171088729e-04, 1.0956e+00, 1.5192e-02, - 2DIAGNOSTIC, 25, -5.977062544034e-01, 9.597541217917e-05, 1.1108e+00, 1.5192e-02, - 2DIAGNOSTIC, 26, -5.976834398173e-01, 7.788801538237e-05, 1.1262e+00, 1.5419e-02, - 2DIAGNOSTIC, 27, -5.976878230379e-01, 6.001705406540e-05, 1.1414e+00, 1.5232e-02, - 2DIAGNOSTIC, 28, -5.976675064454e-01, 4.023793963671e-05, 1.1567e+00, 1.5249e-02, - 2DIAGNOSTIC, 29, -5.976448636098e-01, 2.513764407763e-05, 1.1707e+00, 1.4014e-02, - 2DIAGNOSTIC, 30, -5.976601385604e-01, 1.688924002090e-05, 1.1859e+00, 1.5244e-02, - 2DIAGNOSTIC, 31, -5.976694595608e-01, 8.454087275761e-06, 1.1994e+00, 1.3434e-02, - 2DIAGNOSTIC, 32, -5.976683558363e-01, 2.511042603147e-06, 1.2153e+00, 1.5974e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.017929523473e-01, 1.797693134862e+308, 1.6431e+00, 4.2779e-01, - 2DIAGNOSTIC, 2, -5.020188697749e-01, 1.797693134862e+308, 1.7270e+00, 8.3905e-02, - 2DIAGNOSTIC, 3, -5.021603546902e-01, 1.797693134862e+308, 1.8125e+00, 8.5476e-02, - 2DIAGNOSTIC, 4, -5.022235012121e-01, 1.797693134862e+308, 1.9106e+00, 9.8129e-02, - 2DIAGNOSTIC, 5, -5.022817505715e-01, 1.797693134862e+308, 2.0209e+00, 1.1029e-01, - 2DIAGNOSTIC, 6, -5.023037720519e-01, 1.797693134862e+308, 2.1178e+00, 9.6838e-02, - 2DIAGNOSTIC, 7, -5.023048022512e-01, 1.797693134862e+308, 2.2132e+00, 9.5394e-02, - 2DIAGNOSTIC, 8, -5.023368047904e-01, 1.797693134862e+308, 2.3070e+00, 9.3811e-02, - 2DIAGNOSTIC, 9, -5.023528640995e-01, 1.797693134862e+308, 2.4018e+00, 9.4798e-02, - 2DIAGNOSTIC, 10, -5.024633838574e-01, 6.699714353821e-05, 2.5011e+00, 9.9320e-02, - 2DIAGNOSTIC, 11, -5.028172587214e-01, 6.358068030338e-05, 2.6320e+00, 1.3091e-01, - 2DIAGNOSTIC, 12, -5.030594276007e-01, 7.683655549293e-05, 2.7733e+00, 1.4135e-01, - 2DIAGNOSTIC, 13, -5.032333819709e-01, 9.498041063016e-05, 2.8752e+00, 1.0181e-01, - 2DIAGNOSTIC, 14, -5.034062678987e-01, 1.117191965486e-04, 2.9728e+00, 9.7625e-02, - 2DIAGNOSTIC, 15, -5.040579250056e-01, 1.428989849585e-04, 3.1110e+00, 1.3818e-01, - 2DIAGNOSTIC, 16, -5.042578751052e-01, 1.643824393384e-04, 3.2058e+00, 9.4885e-02, - 2DIAGNOSTIC, 17, -5.043329801810e-01, 1.709124966963e-04, 3.3018e+00, 9.5943e-02, - 2DIAGNOSTIC, 18, -5.044774938987e-01, 1.670503898805e-04, 3.3998e+00, 9.7973e-02, - 2DIAGNOSTIC, 19, -5.052109964224e-01, 1.705328752897e-04, 3.5054e+00, 1.0569e-01, - 2DIAGNOSTIC, 20, -5.053294411409e-01, 1.634607703186e-04, 3.6400e+00, 1.3451e-01, - 2DIAGNOSTIC, 21, -5.054398833719e-01, 1.544660604904e-04, 3.7245e+00, 8.4556e-02, - 2DIAGNOSTIC, 22, -5.054973711367e-01, 1.401001210413e-04, 3.8158e+00, 9.1289e-02, - 2DIAGNOSTIC, 23, -5.056951403402e-01, 1.231968662294e-04, 3.9148e+00, 9.8970e-02, - 2DIAGNOSTIC, 24, -5.057513176407e-01, 1.009361607036e-04, 4.0652e+00, 1.5044e-01, - 2DIAGNOSTIC, 25, -5.057552675661e-01, 8.577758965540e-05, 4.1630e+00, 9.7804e-02, - 2DIAGNOSTIC, 26, -5.057600188902e-01, 6.856404247176e-05, 4.2620e+00, 9.8936e-02, - 2DIAGNOSTIC, 27, -5.057688692051e-01, 4.815456247837e-05, 4.3473e+00, 8.5330e-02, - 2DIAGNOSTIC, 28, -5.057763885898e-01, 2.740417501473e-05, 4.4474e+00, 1.0010e-01, - 2DIAGNOSTIC, 29, -5.057833163152e-01, 1.995442169832e-05, 4.5592e+00, 1.1184e-01, - 2DIAGNOSTIC, 30, -5.057826909464e-01, 1.344461725928e-05, 4.6433e+00, 8.4038e-02, - 2DIAGNOSTIC, 31, -5.057810556623e-01, 8.195358407737e-06, 4.7405e+00, 9.7220e-02, - 2DIAGNOSTIC, 32, -5.057898883906e-01, 3.677196457330e-06, 4.8393e+00, 9.8868e-02, - 2DIAGNOSTIC, 33, -5.057864396606e-01, 2.465834959817e-06, 4.9412e+00, 1.0181e-01, - 2DIAGNOSTIC, 34, -5.057841125375e-01, 2.078529961751e-06, 5.0340e+00, 9.2888e-02, - 2DIAGNOSTIC, 35, -5.057840883455e-01, 1.672402119027e-06, 5.1289e+00, 9.4901e-02, - 2DIAGNOSTIC, 36, -5.057883932765e-01, 1.356193775795e-06, 5.2216e+00, 9.2696e-02, - 2DIAGNOSTIC, 37, -5.058032735242e-01, 1.367233998413e-06, 5.3183e+00, 9.6631e-02, - 2DIAGNOSTIC, 38, -5.058450011138e-01, 2.051353739419e-06, 5.4256e+00, 1.0732e-01, - 2DIAGNOSTIC, 39, -5.058499508627e-01, 2.745574881516e-06, 5.5239e+00, 9.8321e-02, - 2DIAGNOSTIC, 40, -5.058530337237e-01, 3.265546567634e-06, 5.6340e+00, 1.1006e-01, - 2DIAGNOSTIC, 41, -5.058558293562e-01, 3.543127151107e-06, 5.7453e+00, 1.1136e-01, - 2DIAGNOSTIC, 42, -5.058686053245e-01, 3.829025216923e-06, 5.8548e+00, 1.0942e-01, - 2DIAGNOSTIC, 43, -5.058762862717e-01, 3.851681849302e-06, 5.9484e+00, 9.3668e-02, - 2DIAGNOSTIC, 44, -5.058930191103e-01, 3.760736803662e-06, 6.0415e+00, 9.3103e-02, - 2DIAGNOSTIC, 45, -5.059510866124e-01, 4.115937908094e-06, 6.1798e+00, 1.3824e-01, - 2DIAGNOSTIC, 46, -5.059547191688e-01, 4.211107477375e-06, 6.2888e+00, 1.0905e-01, - 2DIAGNOSTIC, 47, -5.059334946774e-01, 3.883782924676e-06, 6.3990e+00, 1.1014e-01, - 2DIAGNOSTIC, 48, -5.059880349567e-01, 4.407774954994e-06, 6.7510e+00, 3.5204e-01, - 2DIAGNOSTIC, 49, -5.059880344487e-01, 4.584029392293e-06, 6.8491e+00, 9.8065e-02, - 2DIAGNOSTIC, 50, -5.059880359365e-01, 4.404789769537e-06, 6.9456e+00, 9.6525e-02, - 2DIAGNOSTIC, 51, -5.059880384517e-01, 3.909859061711e-06, 7.0422e+00, 9.6649e-02, - 2DIAGNOSTIC, 52, -5.059880427026e-01, 3.268851789744e-06, 7.1355e+00, 9.3221e-02, - 2DIAGNOSTIC, 53, -5.059880498836e-01, 2.472954250855e-06, 7.2318e+00, 9.6360e-02, - 2DIAGNOSTIC, 54, -5.059880620115e-01, 1.678873616059e-06, 7.3268e+00, 9.4944e-02, - 2DIAGNOSTIC, 55, -5.059880824903e-01, 1.409192575238e-06, 7.4231e+00, 9.6335e-02, - 2DIAGNOSTIC, 56, -5.059881173428e-01, 1.119069041659e-06, 7.5174e+00, 9.4301e-02, - Elapsed time (stage 1): 7.6552e+00 - - -Total elapsed time: 1.3077e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:58:43 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 03:58:44 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55615d5ff4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.604, -107.075] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55615d604fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f68b14da010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55615d600850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.604, -107.075] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55615d5fdf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f68ade1b010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55615d617b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.604, -107.075] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55615d604550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f68aa75c010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55615d61cd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.604, -107.075] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55615d61ac00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f68a709d010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55615d61ef70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.604, -107.075] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55615d61d3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f68a39de010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55615d61f540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [110.551, 61.604, -107.075] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55615d61f4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f68a031f010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.417431240840e-01, 1.797693134862e+308, 2.1302e-01, 2.1302e-01, - 2DIAGNOSTIC, 2, -5.442417837785e-01, 1.797693134862e+308, 2.1503e-01, 2.0070e-03, - 2DIAGNOSTIC, 3, -5.484440620907e-01, 1.797693134862e+308, 2.1702e-01, 1.9920e-03, - 2DIAGNOSTIC, 4, -5.546802564334e-01, 1.797693134862e+308, 2.1894e-01, 1.9181e-03, - 2DIAGNOSTIC, 5, -5.627356313244e-01, 1.797693134862e+308, 2.2089e-01, 1.9500e-03, - 2DIAGNOSTIC, 6, -5.671014287452e-01, 1.797693134862e+308, 2.2313e-01, 2.2380e-03, - 2DIAGNOSTIC, 7, -5.678806327399e-01, 1.797693134862e+308, 2.2510e-01, 1.9720e-03, - 2DIAGNOSTIC, 8, -5.684814095518e-01, 1.797693134862e+308, 2.2736e-01, 2.2628e-03, - 2DIAGNOSTIC, 9, -5.696747617747e-01, 1.797693134862e+308, 2.3075e-01, 3.3848e-03, - 2DIAGNOSTIC, 10, -5.698410047942e-01, 3.623551431733e-03, 2.3290e-01, 2.1529e-03, - 2DIAGNOSTIC, 11, -5.700965803326e-01, 2.671550512629e-03, 2.3502e-01, 2.1181e-03, - 2DIAGNOSTIC, 12, -5.706246287906e-01, 1.772251263223e-03, 2.3716e-01, 2.1410e-03, - 2DIAGNOSTIC, 13, -5.710318159636e-01, 1.031650611737e-03, 2.3926e-01, 2.1050e-03, - 2DIAGNOSTIC, 14, -5.714079753082e-01, 5.367364204967e-04, 2.4131e-01, 2.0468e-03, - 2DIAGNOSTIC, 15, -5.718169701505e-01, 3.409672561253e-04, 2.4362e-01, 2.3038e-03, - 2DIAGNOSTIC, 16, -5.722102627573e-01, 2.887905158984e-04, 2.4645e-01, 2.8329e-03, - 2DIAGNOSTIC, 17, -5.722977799575e-01, 2.417850732466e-04, 2.4851e-01, 2.0652e-03, - 2DIAGNOSTIC, 18, -5.724235783978e-01, 1.974143231658e-04, 2.5084e-01, 2.3229e-03, - 2DIAGNOSTIC, 19, -5.726950719942e-01, 1.784572726756e-04, 2.5366e-01, 2.8241e-03, - 2DIAGNOSTIC, 20, -5.727966683007e-01, 1.515083338929e-04, 2.5576e-01, 2.1040e-03, - 2DIAGNOSTIC, 21, -5.728260779932e-01, 1.197723941327e-04, 2.5793e-01, 2.1679e-03, - 2DIAGNOSTIC, 22, -5.728574594781e-01, 9.270424116008e-05, 2.6053e-01, 2.6019e-03, - 2DIAGNOSTIC, 23, -5.731111465555e-01, 7.385670904670e-05, 2.6386e-01, 3.3278e-03, - 2DIAGNOSTIC, 24, -5.732226144955e-01, 5.963158723637e-05, 2.6591e-01, 2.0492e-03, - 2DIAGNOSTIC, 25, -5.732585189454e-01, 4.979080152117e-05, 2.6804e-01, 2.1241e-03, - 2DIAGNOSTIC, 26, -5.732829266790e-01, 4.433547484954e-05, 2.7015e-01, 2.1172e-03, - 2DIAGNOSTIC, 27, -5.732946829402e-01, 3.709513230735e-05, 2.7228e-01, 2.1241e-03, - 2DIAGNOSTIC, 28, -5.733354838845e-01, 2.978478202096e-05, 2.7467e-01, 2.3901e-03, - 2DIAGNOSTIC, 29, -5.733433776246e-01, 2.500323450907e-05, 2.7700e-01, 2.3301e-03, - 2DIAGNOSTIC, 30, -5.733583171577e-01, 2.027807065753e-05, 2.8015e-01, 3.1500e-03, - 2DIAGNOSTIC, 31, -5.737425814293e-01, 2.077556747056e-05, 2.8396e-01, 3.8140e-03, - 2DIAGNOSTIC, 32, -5.737524757080e-01, 1.975923063636e-05, 2.8649e-01, 2.5280e-03, - 2DIAGNOSTIC, 33, -5.737550517697e-01, 2.092984082418e-05, 2.8865e-01, 2.1591e-03, - 2DIAGNOSTIC, 34, -5.737594455596e-01, 2.191917007136e-05, 2.9081e-01, 2.1579e-03, - 2DIAGNOSTIC, 35, -5.737616161739e-01, 2.138011019872e-05, 2.9323e-01, 2.4199e-03, - 2DIAGNOSTIC, 36, -5.737674781037e-01, 1.925877175096e-05, 2.9666e-01, 3.4361e-03, - 2DIAGNOSTIC, 37, -5.737676580866e-01, 1.563234242329e-05, 2.9926e-01, 2.6009e-03, - 2DIAGNOSTIC, 38, -5.737676743574e-01, 1.141026070810e-05, 3.0209e-01, 2.8288e-03, - 2DIAGNOSTIC, 39, -5.737676759335e-01, 6.556460824481e-06, 3.0474e-01, 2.6510e-03, - 2DIAGNOSTIC, 40, -5.737676762880e-01, 1.450348859400e-06, 3.0743e-01, 2.6870e-03, - 2DIAGNOSTIC, 41, -5.737676763641e-01, 1.205737863188e-06, 3.1009e-01, 2.6600e-03, - 2DIAGNOSTIC, 42, -5.737676763832e-01, 1.049741685681e-06, 3.1254e-01, 2.4490e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.717942518544e-01, 1.797693134862e+308, 5.4068e-01, 2.2814e-01, - 2DIAGNOSTIC, 2, -4.723641717186e-01, 1.797693134862e+308, 5.5459e-01, 1.3903e-02, - 2DIAGNOSTIC, 3, -4.728395128522e-01, 1.797693134862e+308, 5.6782e-01, 1.3230e-02, - 2DIAGNOSTIC, 4, -4.732554495518e-01, 1.797693134862e+308, 5.8283e-01, 1.5018e-02, - 2DIAGNOSTIC, 5, -4.732999965687e-01, 1.797693134862e+308, 5.9580e-01, 1.2970e-02, - 2DIAGNOSTIC, 6, -4.734496355777e-01, 1.797693134862e+308, 6.0890e-01, 1.3092e-02, - 2DIAGNOSTIC, 7, -4.738303058815e-01, 1.797693134862e+308, 6.2383e-01, 1.4938e-02, - 2DIAGNOSTIC, 8, -4.739322382908e-01, 1.797693134862e+308, 6.4447e-01, 2.0636e-02, - 2DIAGNOSTIC, 9, -4.739335044158e-01, 1.797693134862e+308, 6.5954e-01, 1.5071e-02, - 2DIAGNOSTIC, 10, -4.739293359640e-01, 2.774081449004e-04, 6.7542e-01, 1.5875e-02, - 2DIAGNOSTIC, 11, -4.739747506902e-01, 1.883101914987e-04, 6.9524e-01, 1.9825e-02, - 2DIAGNOSTIC, 12, -4.739789264927e-01, 1.253506203829e-04, 7.1092e-01, 1.5677e-02, - 2DIAGNOSTIC, 13, -4.739693744572e-01, 8.197837731495e-05, 7.2660e-01, 1.5685e-02, - 2DIAGNOSTIC, 14, -4.739479728021e-01, 5.482028860464e-05, 7.4110e-01, 1.4494e-02, - 2DIAGNOSTIC, 15, -4.739391711395e-01, 2.801722376285e-05, 7.5707e-01, 1.5968e-02, - 2DIAGNOSTIC, 16, -4.739423149014e-01, 7.526862306928e-06, 7.7372e-01, 1.6654e-02, - 2DIAGNOSTIC, 17, -4.739351467266e-01, 1.994094590417e-06, 7.8792e-01, 1.4205e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.974575568171e-01, 1.797693134862e+308, 1.1946e+00, 4.0670e-01, - 2DIAGNOSTIC, 2, -3.978215377254e-01, 1.797693134862e+308, 1.2867e+00, 9.2106e-02, - 2DIAGNOSTIC, 3, -3.979868982334e-01, 1.797693134862e+308, 1.3783e+00, 9.1614e-02, - 2DIAGNOSTIC, 4, -3.980767583327e-01, 1.797693134862e+308, 1.4704e+00, 9.2101e-02, - 2DIAGNOSTIC, 5, -3.981309823757e-01, 1.797693134862e+308, 1.5630e+00, 9.2588e-02, - 2DIAGNOSTIC, 6, -3.982612892108e-01, 1.797693134862e+308, 1.6799e+00, 1.1692e-01, - 2DIAGNOSTIC, 7, -3.982963942030e-01, 1.797693134862e+308, 1.8506e+00, 1.7070e-01, - 2DIAGNOSTIC, 8, -3.982967057342e-01, 1.797693134862e+308, 1.9556e+00, 1.0494e-01, - 2DIAGNOSTIC, 9, -3.982951091550e-01, 1.797693134862e+308, 2.0605e+00, 1.0494e-01, - 2DIAGNOSTIC, 10, -3.982951297226e-01, 1.169015676004e-04, 2.1667e+00, 1.0616e-01, - 2DIAGNOSTIC, 11, -3.982934715760e-01, 6.634349514570e-05, 2.2595e+00, 9.2855e-02, - 2DIAGNOSTIC, 12, -3.982945421579e-01, 4.001477183646e-05, 2.3638e+00, 1.0428e-01, - 2DIAGNOSTIC, 13, -3.982951743976e-01, 2.348081179497e-05, 2.4678e+00, 1.0401e-01, - 2DIAGNOSTIC, 14, -3.982955565017e-01, 1.203030003073e-05, 2.5586e+00, 9.0795e-02, - 2DIAGNOSTIC, 15, -3.982938276985e-01, 3.558171974616e-06, 2.6657e+00, 1.0704e-01, - 2DIAGNOSTIC, 16, -3.982943754065e-01, 1.809378400885e-06, 2.7719e+00, 1.0625e-01, - 2DIAGNOSTIC, 17, -3.982916023933e-01, 1.637399051513e-06, 2.8715e+00, 9.9553e-02, - 2DIAGNOSTIC, 18, -3.982921563556e-01, 1.542902414144e-06, 2.9589e+00, 8.7388e-02, - 2DIAGNOSTIC, 19, -3.982901599681e-01, 1.342498118471e-06, 3.0592e+00, 1.0038e-01, - 2DIAGNOSTIC, 20, -3.982870506245e-01, 1.086881493001e-06, 3.1419e+00, 8.2658e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.504075639761e-01, 1.797693134862e+308, 5.0260e+00, 1.8842e+00, - 2DIAGNOSTIC, 2, -3.504076090878e-01, 1.797693134862e+308, 5.8432e+00, 8.1717e-01, - 2DIAGNOSTIC, 3, -3.504076410962e-01, 1.797693134862e+308, 6.4615e+00, 6.1828e-01, - 2DIAGNOSTIC, 4, -3.504075417950e-01, 1.797693134862e+308, 7.0331e+00, 5.7164e-01, - 2DIAGNOSTIC, 5, -3.504074544799e-01, 1.797693134862e+308, 7.5616e+00, 5.2846e-01, - 2DIAGNOSTIC, 6, -3.504073623646e-01, 1.797693134862e+308, 8.1383e+00, 5.7668e-01, - 2DIAGNOSTIC, 7, -3.504072855747e-01, 1.797693134862e+308, 8.6834e+00, 5.4513e-01, - 2DIAGNOSTIC, 8, -3.504071162782e-01, 1.797693134862e+308, 9.3005e+00, 6.1707e-01, - 2DIAGNOSTIC, 9, -3.504072382325e-01, 1.797693134862e+308, 9.9216e+00, 6.2110e-01, - 2DIAGNOSTIC, 10, -3.504072179475e-01, 3.085822106050e-06, 1.0518e+01, 5.9655e-01, - 2DIAGNOSTIC, 11, -3.504071595895e-01, 2.803118913430e-06, 1.1022e+01, 5.0434e-01, - 2DIAGNOSTIC, 12, -3.504070215013e-01, 2.569346859854e-06, 1.1558e+01, 5.3533e-01, - 2DIAGNOSTIC, 13, -3.504069052910e-01, 2.374010998105e-06, 1.2087e+01, 5.2883e-01, - 2DIAGNOSTIC, 14, -3.504068147110e-01, 2.202172958377e-06, 1.2698e+01, 6.1095e-01, - 2DIAGNOSTIC, 15, -3.504067768367e-01, 2.052756319676e-06, 1.3212e+01, 5.1430e-01, - 2DIAGNOSTIC, 16, -3.504068008565e-01, 1.924884242083e-06, 1.3824e+01, 6.1176e-01, - 2DIAGNOSTIC, 17, -3.504067717827e-01, 1.813130043979e-06, 1.4436e+01, 6.1233e-01, - 2DIAGNOSTIC, 18, -3.504066158016e-01, 1.704436203759e-06, 1.5062e+01, 6.2621e-01, - 2DIAGNOSTIC, 19, -3.504064788523e-01, 1.612542340816e-06, 1.5678e+01, 6.1595e-01, - 2DIAGNOSTIC, 20, -3.504066188655e-01, 1.540445893428e-06, 1.6360e+01, 6.8161e-01, - 2DIAGNOSTIC, 21, -3.504065673574e-01, 1.475354156094e-06, 1.6970e+01, 6.0983e-01, - 2DIAGNOSTIC, 22, -3.504064956882e-01, 1.412256072787e-06, 1.7606e+01, 6.3599e-01, - 2DIAGNOSTIC, 23, -3.504064345431e-01, 1.351873646076e-06, 1.8181e+01, 5.7575e-01, - 2DIAGNOSTIC, 24, -3.504068018950e-01, 1.308909477263e-06, 1.8729e+01, 5.4747e-01, - 2DIAGNOSTIC, 25, -3.504068636558e-01, 1.271134467316e-06, 1.9349e+01, 6.2066e-01, - 2DIAGNOSTIC, 26, -3.504070517762e-01, 1.242970017849e-06, 1.9966e+01, 6.1690e-01, - 2DIAGNOSTIC, 27, -3.504070891283e-01, 1.215545614976e-06, 2.0589e+01, 6.2283e-01, - 2DIAGNOSTIC, 28, -3.504066469744e-01, 1.169426390106e-06, 2.1187e+01, 5.9754e-01, - 2DIAGNOSTIC, 29, -3.504063681939e-01, 1.111826650656e-06, 2.1793e+01, 6.0596e-01, - 2DIAGNOSTIC, 30, -3.504062615535e-01, 1.057550202209e-06, 2.2411e+01, 6.1798e-01, - 2DIAGNOSTIC, 31, -3.504061548376e-01, 1.002800753450e-06, 2.3025e+01, 6.1386e-01, - Elapsed time (stage 0): 2.3386e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.656726446935e-01, 1.797693134862e+308, 1.7439e-01, 1.7439e-01, - 2DIAGNOSTIC, 2, -5.666713176276e-01, 1.797693134862e+308, 1.7633e-01, 1.9391e-03, - 2DIAGNOSTIC, 3, -5.677249975004e-01, 1.797693134862e+308, 1.7820e-01, 1.8699e-03, - 2DIAGNOSTIC, 4, -5.693951236937e-01, 1.797693134862e+308, 1.8016e-01, 1.9569e-03, - 2DIAGNOSTIC, 5, -5.713652452289e-01, 1.797693134862e+308, 1.8243e-01, 2.2740e-03, - 2DIAGNOSTIC, 6, -5.727490815245e-01, 1.797693134862e+308, 1.8458e-01, 2.1451e-03, - 2DIAGNOSTIC, 7, -5.744609080493e-01, 1.797693134862e+308, 1.8686e-01, 2.2869e-03, - 2DIAGNOSTIC, 8, -5.751823339601e-01, 1.797693134862e+308, 1.8893e-01, 2.0700e-03, - 2DIAGNOSTIC, 9, -5.762416427587e-01, 1.797693134862e+308, 1.9136e-01, 2.4219e-03, - 2DIAGNOSTIC, 10, -5.786349685212e-01, 1.452158525098e-03, 1.9442e-01, 3.0680e-03, - 2DIAGNOSTIC, 11, -5.794711804700e-01, 1.320814668242e-03, 1.9687e-01, 2.4478e-03, - 2DIAGNOSTIC, 12, -5.804552925207e-01, 1.175638222751e-03, 2.0001e-01, 3.1369e-03, - 2DIAGNOSTIC, 13, -5.809094111230e-01, 1.004524952327e-03, 2.0287e-01, 2.8651e-03, - 2DIAGNOSTIC, 14, -5.804531737653e-01, 8.091378824998e-04, 2.0541e-01, 2.5392e-03, - 2DIAGNOSTIC, 15, -5.805081928760e-01, 6.325598215753e-04, 2.0771e-01, 2.2941e-03, - 2DIAGNOSTIC, 16, -5.809247268142e-01, 4.745521090830e-04, 2.0998e-01, 2.2731e-03, - 2DIAGNOSTIC, 17, -5.809216926051e-01, 3.412225768164e-04, 2.1227e-01, 2.2941e-03, - 2DIAGNOSTIC, 18, -5.810575136349e-01, 2.152511272863e-04, 2.1483e-01, 2.5551e-03, - 2DIAGNOSTIC, 19, -5.807675633653e-01, 1.019884861707e-04, 2.1794e-01, 3.1149e-03, - 2DIAGNOSTIC, 20, -5.806231717486e-01, 4.639673683691e-05, 2.2048e-01, 2.5358e-03, - 2DIAGNOSTIC, 21, -5.805527473823e-01, 9.135437033236e-06, 2.2302e-01, 2.5361e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.722630153838e-01, 1.797693134862e+308, 4.3306e-01, 2.1005e-01, - 2DIAGNOSTIC, 2, -4.729605341068e-01, 1.797693134862e+308, 4.4775e-01, 1.4685e-02, - 2DIAGNOSTIC, 3, -4.739333384067e-01, 1.797693134862e+308, 4.6280e-01, 1.5048e-02, - 2DIAGNOSTIC, 4, -4.749584852446e-01, 1.797693134862e+308, 4.7760e-01, 1.4802e-02, - 2DIAGNOSTIC, 5, -4.762435431957e-01, 1.797693134862e+308, 4.9155e-01, 1.3951e-02, - 2DIAGNOSTIC, 6, -4.773949008762e-01, 1.797693134862e+308, 5.0922e-01, 1.7667e-02, - 2DIAGNOSTIC, 7, -4.784929757717e-01, 1.797693134862e+308, 5.2851e-01, 1.9288e-02, - 2DIAGNOSTIC, 8, -4.785673825483e-01, 1.797693134862e+308, 5.4232e-01, 1.3815e-02, - 2DIAGNOSTIC, 9, -4.787772581354e-01, 1.797693134862e+308, 5.5670e-01, 1.4383e-02, - 2DIAGNOSTIC, 10, -4.790205564966e-01, 1.013659868272e-03, 5.6974e-01, 1.3038e-02, - 2DIAGNOSTIC, 11, -4.792308396627e-01, 7.978673339216e-04, 5.8381e-01, 1.4072e-02, - 2DIAGNOSTIC, 12, -4.793735748334e-01, 5.878453923976e-04, 5.9608e-01, 1.2262e-02, - 2DIAGNOSTIC, 13, -4.795925233953e-01, 4.121444063744e-04, 6.1127e-01, 1.5190e-02, - 2DIAGNOSTIC, 14, -4.796744431202e-01, 2.711055793578e-04, 6.2493e-01, 1.3659e-02, - 2DIAGNOSTIC, 15, -4.797564063731e-01, 1.778312316744e-04, 6.3851e-01, 1.3587e-02, - 2DIAGNOSTIC, 16, -4.799385788001e-01, 1.286541992936e-04, 6.5094e-01, 1.2428e-02, - 2DIAGNOSTIC, 17, -4.802246437604e-01, 1.219858613013e-04, 6.6656e-01, 1.5618e-02, - 2DIAGNOSTIC, 18, -4.805058778286e-01, 1.164258071398e-04, 6.8436e-01, 1.7806e-02, - 2DIAGNOSTIC, 19, -4.807547559028e-01, 1.149908215552e-04, 7.0022e-01, 1.5852e-02, - 2DIAGNOSTIC, 20, -4.807768623201e-01, 1.109971965027e-04, 7.1644e-01, 1.6222e-02, - 2DIAGNOSTIC, 21, -4.808816841743e-01, 1.061803618950e-04, 7.3235e-01, 1.5913e-02, - 2DIAGNOSTIC, 22, -4.808964842895e-01, 9.604010759574e-05, 7.4627e-01, 1.3920e-02, - 2DIAGNOSTIC, 23, -4.809171999632e-01, 8.402562838735e-05, 7.6043e-01, 1.4155e-02, - 2DIAGNOSTIC, 24, -4.809440577738e-01, 6.797562906162e-05, 7.7478e-01, 1.4354e-02, - 2DIAGNOSTIC, 25, -4.809872850800e-01, 4.995162317868e-05, 7.8898e-01, 1.4204e-02, - 2DIAGNOSTIC, 26, -4.811488885743e-01, 3.651796920669e-05, 8.1020e-01, 2.1217e-02, - 2DIAGNOSTIC, 27, -4.811760734794e-01, 2.744673582878e-05, 8.2425e-01, 1.4048e-02, - 2DIAGNOSTIC, 28, -4.811887842302e-01, 2.269883598809e-05, 8.3849e-01, 1.4237e-02, - 2DIAGNOSTIC, 29, -4.811998647399e-01, 2.161946580968e-05, 8.5280e-01, 1.4314e-02, - 2DIAGNOSTIC, 30, -4.812072527830e-01, 1.918365990777e-05, 8.6708e-01, 1.4275e-02, - 2DIAGNOSTIC, 31, -4.814171512474e-01, 2.116228482883e-05, 8.9249e-01, 2.5418e-02, - 2DIAGNOSTIC, 32, -4.814544166438e-01, 2.195530906503e-05, 9.4003e-01, 4.7533e-02, - 2DIAGNOSTIC, 33, -4.814544146478e-01, 2.114962933093e-05, 9.5450e-01, 1.4472e-02, - 2DIAGNOSTIC, 34, -4.814544150972e-01, 1.902714527295e-05, 9.6889e-01, 1.4391e-02, - 2DIAGNOSTIC, 35, -4.814544158572e-01, 1.596478274144e-05, 9.8309e-01, 1.4199e-02, - 2DIAGNOSTIC, 36, -4.814544171424e-01, 1.423439503539e-05, 9.9732e-01, 1.4236e-02, - 2DIAGNOSTIC, 37, -4.814544193154e-01, 1.173878840665e-05, 1.0116e+00, 1.4227e-02, - 2DIAGNOSTIC, 38, -4.814544229895e-01, 8.585258628836e-06, 1.0263e+00, 1.4709e-02, - 2DIAGNOSTIC, 39, -4.814544292011e-01, 5.068903668054e-06, 1.0417e+00, 1.5471e-02, - 2DIAGNOSTIC, 40, -4.814544397011e-01, 1.350786096307e-06, 1.0572e+00, 1.5478e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.013818171996e-01, 1.797693134862e+308, 1.4382e+00, 3.8097e-01, - 2DIAGNOSTIC, 2, -4.018199963322e-01, 1.797693134862e+308, 1.5389e+00, 1.0068e-01, - 2DIAGNOSTIC, 3, -4.021236207714e-01, 1.797693134862e+308, 1.6389e+00, 9.9997e-02, - 2DIAGNOSTIC, 4, -4.022865865381e-01, 1.797693134862e+308, 1.7393e+00, 1.0045e-01, - 2DIAGNOSTIC, 5, -4.024698955953e-01, 1.797693134862e+308, 1.8664e+00, 1.2712e-01, - 2DIAGNOSTIC, 6, -4.026259023980e-01, 1.797693134862e+308, 2.0087e+00, 1.4225e-01, - 2DIAGNOSTIC, 7, -4.026289778478e-01, 1.797693134862e+308, 2.0936e+00, 8.4912e-02, - 2DIAGNOSTIC, 8, -4.026391259119e-01, 1.797693134862e+308, 2.1763e+00, 8.2725e-02, - 2DIAGNOSTIC, 9, -4.026508993652e-01, 1.797693134862e+308, 2.2713e+00, 9.4937e-02, - 2DIAGNOSTIC, 10, -4.026610474670e-01, 1.835052610213e-04, 2.3727e+00, 1.0147e-01, - 2DIAGNOSTIC, 11, -4.026679518752e-01, 1.090237356794e-04, 2.4738e+00, 1.0106e-01, - 2DIAGNOSTIC, 12, -4.026760701237e-01, 6.346396077836e-05, 2.5881e+00, 1.1430e-01, - 2DIAGNOSTIC, 13, -4.026918672707e-01, 3.677423265329e-05, 2.7012e+00, 1.1310e-01, - 2DIAGNOSTIC, 14, -4.026984753466e-01, 1.914257518351e-05, 2.8016e+00, 1.0039e-01, - 2DIAGNOSTIC, 15, -4.027033405220e-01, 1.097638197212e-05, 2.9163e+00, 1.1471e-01, - 2DIAGNOSTIC, 16, -4.027070211240e-01, 1.007812935236e-05, 3.0833e+00, 1.6702e-01, - 2DIAGNOSTIC, 17, -4.027075112472e-01, 8.683056901528e-06, 3.1990e+00, 1.1570e-01, - 2DIAGNOSTIC, 18, -4.027075570010e-01, 7.201446586530e-06, 3.3198e+00, 1.2076e-01, - 2DIAGNOSTIC, 19, -4.027075654580e-01, 5.802828339264e-06, 3.4244e+00, 1.0466e-01, - 2DIAGNOSTIC, 20, -4.027075795871e-01, 4.520941813226e-06, 3.5239e+00, 9.9453e-02, - 2DIAGNOSTIC, 21, -4.027076180499e-01, 3.321168960693e-06, 3.6211e+00, 9.7259e-02, - 2DIAGNOSTIC, 22, -4.027078255829e-01, 2.318946807606e-06, 3.7213e+00, 1.0021e-01, - 2DIAGNOSTIC, 23, -4.027083157733e-01, 1.819853919734e-06, 3.8129e+00, 9.1599e-02, - 2DIAGNOSTIC, 24, -4.027090212611e-01, 1.533731889707e-06, 3.9149e+00, 1.0198e-01, - 2DIAGNOSTIC, 25, -4.027096541755e-01, 1.403155088370e-06, 4.0280e+00, 1.1313e-01, - 2DIAGNOSTIC, 26, -4.027099144018e-01, 1.376937898138e-06, 4.1424e+00, 1.1440e-01, - 2DIAGNOSTIC, 27, -4.027074183255e-01, 1.285937566174e-06, 4.3165e+00, 1.7406e-01, - 2DIAGNOSTIC, 28, -4.027075624204e-01, 1.197956845111e-06, 4.6679e+00, 3.5143e-01, - 2DIAGNOSTIC, 29, -4.027075624194e-01, 1.109406346726e-06, 4.9878e+00, 3.1988e-01, - 2DIAGNOSTIC, 30, -4.027075624194e-01, 1.024912936957e-06, 5.1006e+00, 1.1273e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.507876071532e-01, 1.797693134862e+308, 6.3359e+00, 1.2354e+00, - 2DIAGNOSTIC, 2, -3.509297109833e-01, 1.797693134862e+308, 6.8601e+00, 5.2416e-01, - 2DIAGNOSTIC, 3, -3.510026004129e-01, 1.797693134862e+308, 7.4478e+00, 5.8766e-01, - 2DIAGNOSTIC, 4, -3.510866107517e-01, 1.797693134862e+308, 8.5671e+00, 1.1193e+00, - 2DIAGNOSTIC, 5, -3.510889592147e-01, 1.797693134862e+308, 9.1326e+00, 5.6548e-01, - 2DIAGNOSTIC, 6, -3.510991529769e-01, 1.797693134862e+308, 9.6698e+00, 5.3723e-01, - 2DIAGNOSTIC, 7, -3.511134736372e-01, 1.797693134862e+308, 1.0283e+01, 6.1303e-01, - 2DIAGNOSTIC, 8, -3.511293422723e-01, 1.797693134862e+308, 1.0883e+01, 6.0019e-01, - 2DIAGNOSTIC, 9, -3.511424787062e-01, 1.797693134862e+308, 1.1452e+01, 5.6874e-01, - 2DIAGNOSTIC, 10, -3.511499216555e-01, 5.591856361163e-05, 1.1975e+01, 5.2300e-01, - 2DIAGNOSTIC, 11, -3.511585645004e-01, 3.365522019490e-05, 1.2501e+01, 5.2586e-01, - 2DIAGNOSTIC, 12, -3.511776945259e-01, 2.313304952374e-05, 1.3154e+01, 6.5301e-01, - 2DIAGNOSTIC, 13, -3.511867161648e-01, 1.730049225986e-05, 1.4727e+01, 1.5729e+00, - 2DIAGNOSTIC, 14, -3.511868256004e-01, 1.582173791101e-05, 1.6528e+01, 1.8011e+00, - 2DIAGNOSTIC, 15, -3.511868255998e-01, 1.344885131210e-05, 1.8009e+01, 1.4818e+00, - 2DIAGNOSTIC, 16, -3.511868255998e-01, 1.084444035555e-05, 1.8686e+01, 6.7617e-01, - 2DIAGNOSTIC, 17, -3.511868255998e-01, 8.386334877285e-06, 1.9504e+01, 8.1883e-01, - 2DIAGNOSTIC, 18, -3.511868255998e-01, 6.296533055741e-06, 2.0253e+01, 7.4828e-01, - 2DIAGNOSTIC, 19, -3.511868255998e-01, 4.573841308524e-06, 2.0844e+01, 5.9149e-01, - 2DIAGNOSTIC, 20, -3.511868255998e-01, 3.060515501987e-06, 2.1447e+01, 6.0238e-01, - 2DIAGNOSTIC, 21, -3.511868255998e-01, 1.870679138968e-06, 2.2127e+01, 6.8014e-01, - 2DIAGNOSTIC, 22, -3.511868255998e-01, 1.450189470613e-06, 2.2758e+01, 6.3091e-01, - 2DIAGNOSTIC, 23, -3.511868255998e-01, 1.383275736268e-06, 2.3345e+01, 5.8761e-01, - 2DIAGNOSTIC, 24, -3.511868255998e-01, 1.325629856122e-06, 2.3966e+01, 6.2049e-01, - 2DIAGNOSTIC, 25, -3.511868255998e-01, 1.272596350826e-06, 2.4601e+01, 6.3543e-01, - 2DIAGNOSTIC, 26, -3.511868255998e-01, 1.223642960714e-06, 2.5278e+01, 6.7690e-01, - 2DIAGNOSTIC, 27, -3.511868255998e-01, 1.178316273921e-06, 2.5861e+01, 5.8250e-01, - 2DIAGNOSTIC, 28, -3.511868255998e-01, 1.136227660639e-06, 2.6455e+01, 5.9485e-01, - 2DIAGNOSTIC, 29, -3.511868255998e-01, 1.097042102591e-06, 2.7105e+01, 6.4996e-01, - 2DIAGNOSTIC, 30, -3.511868255998e-01, 1.060469256256e-06, 2.7854e+01, 7.4871e-01, - 2DIAGNOSTIC, 31, -3.511868255998e-01, 1.026256246657e-06, 2.8406e+01, 5.5198e-01, - Elapsed time (stage 1): 2.8780e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.770524931398e-01, 1.797693134862e+308, 2.4747e-01, 2.4747e-01, - 1DIAGNOSTIC, 2, -8.879520895845e-01, 1.797693134862e+308, 3.4112e-01, 9.3651e-02, - 1DIAGNOSTIC, 3, -8.972623511092e-01, 1.797693134862e+308, 4.4100e-01, 9.9875e-02, - 1DIAGNOSTIC, 4, -9.051385679477e-01, 1.797693134862e+308, 5.4763e-01, 1.0663e-01, - 1DIAGNOSTIC, 5, -9.119456039674e-01, 1.797693134862e+308, 6.4959e-01, 1.0196e-01, - 1DIAGNOSTIC, 6, -9.171443481788e-01, 1.797693134862e+308, 7.4875e-01, 9.9160e-02, - 1DIAGNOSTIC, 7, -9.218802948052e-01, 1.797693134862e+308, 8.4763e-01, 9.8881e-02, - 1DIAGNOSTIC, 8, -9.258974024739e-01, 1.797693134862e+308, 9.5602e-01, 1.0839e-01, - 1DIAGNOSTIC, 9, -9.292955360891e-01, 1.797693134862e+308, 1.0593e+00, 1.0324e-01, - 1DIAGNOSTIC, 10, -9.320861048921e-01, 3.746536010065e-03, 1.1622e+00, 1.0294e-01, - 1DIAGNOSTIC, 11, -9.345235401668e-01, 2.869030203821e-03, 1.2682e+00, 1.0598e-01, - 1DIAGNOSTIC, 12, -9.366915518021e-01, 2.218416425456e-03, 1.3602e+00, 9.2070e-02, - 1DIAGNOSTIC, 13, -9.386608656956e-01, 1.735769506767e-03, 1.4668e+00, 1.0653e-01, - 1DIAGNOSTIC, 14, -9.403925366706e-01, 1.375853249969e-03, 1.5687e+00, 1.0192e-01, - 1DIAGNOSTIC, 15, -9.419208106238e-01, 1.109624249543e-03, 1.6690e+00, 1.0036e-01, - 1DIAGNOSTIC, 16, -9.431846389544e-01, 8.989594327161e-04, 1.7604e+00, 9.1327e-02, - 1DIAGNOSTIC, 17, -9.444221227362e-01, 7.380650961836e-04, 1.8608e+00, 1.0042e-01, - 1DIAGNOSTIC, 18, -9.454676550604e-01, 6.128623012257e-04, 1.9631e+00, 1.0231e-01, - 1DIAGNOSTIC, 19, -9.463927594873e-01, 5.136114681101e-04, 2.0645e+00, 1.0135e-01, - 1DIAGNOSTIC, 20, -9.472265398021e-01, 4.319271387446e-04, 2.1665e+00, 1.0207e-01, - 1DIAGNOSTIC, 21, -9.480215392261e-01, 3.647643975179e-04, 2.2677e+00, 1.0115e-01, - 1DIAGNOSTIC, 22, -9.486730223022e-01, 3.086631946970e-04, 2.3690e+00, 1.0134e-01, - 1DIAGNOSTIC, 23, -9.492280037495e-01, 2.619705393523e-04, 2.4734e+00, 1.0436e-01, - 1DIAGNOSTIC, 24, -9.497237416885e-01, 2.228715456929e-04, 2.5777e+00, 1.0435e-01, - 1DIAGNOSTIC, 25, -9.501401055485e-01, 1.896632029663e-04, 2.6814e+00, 1.0370e-01, - 1DIAGNOSTIC, 26, -9.505002848634e-01, 1.601342720856e-04, 2.7775e+00, 9.6082e-02, - 1DIAGNOSTIC, 27, -9.507979790925e-01, 1.350038679238e-04, 2.8731e+00, 9.5608e-02, - 1DIAGNOSTIC, 28, -9.510511455649e-01, 1.130612220645e-04, 2.9692e+00, 9.6123e-02, - 1DIAGNOSTIC, 29, -9.512811478429e-01, 9.408210832506e-05, 3.0700e+00, 1.0081e-01, - 1DIAGNOSTIC, 30, -9.514332015341e-01, 7.745360743321e-05, 3.1703e+00, 1.0023e-01, - 1DIAGNOSTIC, 31, -9.516053969160e-01, 6.407855889611e-05, 3.2720e+00, 1.0177e-01, - 1DIAGNOSTIC, 32, -9.517837009318e-01, 5.337063842896e-05, 3.3717e+00, 9.9659e-02, - 1DIAGNOSTIC, 33, -9.518860773811e-01, 4.431575606569e-05, 3.4686e+00, 9.6859e-02, - 1DIAGNOSTIC, 34, -9.520797576961e-01, 3.779068824843e-05, 3.5654e+00, 9.6834e-02, - 1DIAGNOSTIC, 35, -9.520382014003e-01, 3.132491364991e-05, 3.6647e+00, 9.9358e-02, - 1DIAGNOSTIC, 36, -9.521595231891e-01, 2.638463723247e-05, 3.7605e+00, 9.5780e-02, - 1DIAGNOSTIC, 37, -9.518646917716e-01, 1.925849604532e-05, 3.8636e+00, 1.0306e-01, - 1DIAGNOSTIC, 38, -9.519534572957e-01, 1.352221941505e-05, 3.9634e+00, 9.9764e-02, - 1DIAGNOSTIC, 39, -9.518621422182e-01, 7.900058310577e-06, 4.0683e+00, 1.0489e-01, - 1DIAGNOSTIC, 40, -9.519061320941e-01, 3.352079239877e-06, 4.1695e+00, 1.0127e-01, - 1DIAGNOSTIC, 41, -9.516938910480e-01, -1.527201302722e-06, 4.2696e+00, 1.0012e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.174960189421e-01, 1.797693134862e+308, 5.1343e+00, 8.6465e-01, - 1DIAGNOSTIC, 2, -9.204350004742e-01, 1.797693134862e+308, 5.8023e+00, 6.6796e-01, - 1DIAGNOSTIC, 3, -9.228231493459e-01, 1.797693134862e+308, 6.4400e+00, 6.3777e-01, - 1DIAGNOSTIC, 4, -9.251920462524e-01, 1.797693134862e+308, 7.0937e+00, 6.5367e-01, - 1DIAGNOSTIC, 5, -9.271693677953e-01, 1.797693134862e+308, 7.7589e+00, 6.6519e-01, - 1DIAGNOSTIC, 6, -9.292372163685e-01, 1.797693134862e+308, 8.3898e+00, 6.3091e-01, - 1DIAGNOSTIC, 7, -9.310933305339e-01, 1.797693134862e+308, 9.0368e+00, 6.4697e-01, - 1DIAGNOSTIC, 8, -9.329820883954e-01, 1.797693134862e+308, 9.6948e+00, 6.5799e-01, - 1DIAGNOSTIC, 9, -9.348876907625e-01, 1.797693134862e+308, 1.0357e+01, 6.6273e-01, - 1DIAGNOSTIC, 10, -9.365995223639e-01, 1.288503731029e-03, 1.1020e+01, 6.6230e-01, - 1DIAGNOSTIC, 11, -9.379549205743e-01, 1.098540891797e-03, 1.1664e+01, 6.4440e-01, - 1DIAGNOSTIC, 12, -9.390988342861e-01, 9.452646829446e-04, 1.2334e+01, 6.7005e-01, - 1DIAGNOSTIC, 13, -9.400702890090e-01, 8.085819505144e-04, 1.3000e+01, 6.6591e-01, - 1DIAGNOSTIC, 14, -9.409232135890e-01, 6.877987985682e-04, 1.3658e+01, 6.5748e-01, - 1DIAGNOSTIC, 15, -9.415439184289e-01, 5.727022045340e-04, 1.4321e+01, 6.6316e-01, - 1DIAGNOSTIC, 16, -9.420991920949e-01, 4.693295784749e-04, 1.4986e+01, 6.6472e-01, - 1DIAGNOSTIC, 17, -9.426030380924e-01, 3.770510569708e-04, 1.5637e+01, 6.5100e-01, - 1DIAGNOSTIC, 18, -9.430344906840e-01, 2.991538313522e-04, 1.6277e+01, 6.4055e-01, - 1DIAGNOSTIC, 19, -9.434190435186e-01, 2.381531089864e-04, 1.6946e+01, 6.6886e-01, - 1DIAGNOSTIC, 20, -9.437570868661e-01, 1.921685749937e-04, 1.7588e+01, 6.4201e-01, - 1DIAGNOSTIC, 21, -9.440550883954e-01, 1.565167666943e-04, 1.8237e+01, 6.4882e-01, - 1DIAGNOSTIC, 22, -9.443250088627e-01, 1.289472653919e-04, 1.8874e+01, 6.3773e-01, - 1DIAGNOSTIC, 23, -9.445691898993e-01, 1.076964549473e-04, 1.9543e+01, 6.6828e-01, - 1DIAGNOSTIC, 24, -9.447871085794e-01, 9.167409105449e-05, 2.0212e+01, 6.6957e-01, - 1DIAGNOSTIC, 25, -9.449751819674e-01, 7.816009404096e-05, 2.0854e+01, 6.4176e-01, - 1DIAGNOSTIC, 26, -9.451470458144e-01, 6.684381065124e-05, 2.1489e+01, 6.3496e-01, - 1DIAGNOSTIC, 27, -9.453096880827e-01, 5.759103037117e-05, 2.2125e+01, 6.3605e-01, - 1DIAGNOSTIC, 28, -9.454549070775e-01, 4.984748014353e-05, 2.2764e+01, 6.3900e-01, - 1DIAGNOSTIC, 29, -9.455882309455e-01, 4.338898531744e-05, 2.3414e+01, 6.4968e-01, - 1DIAGNOSTIC, 30, -9.457089488534e-01, 3.794624763637e-05, 2.4087e+01, 6.7332e-01, - 1DIAGNOSTIC, 31, -9.458150874938e-01, 3.326781012734e-05, 2.4749e+01, 6.6194e-01, - 1DIAGNOSTIC, 32, -9.459116553910e-01, 2.925429340240e-05, 2.5411e+01, 6.6198e-01, - 1DIAGNOSTIC, 33, -9.459985260090e-01, 2.580461735639e-05, 2.6063e+01, 6.5213e-01, - 1DIAGNOSTIC, 34, -9.460672304552e-01, 2.272251279612e-05, 2.6730e+01, 6.6692e-01, - 1DIAGNOSTIC, 35, -9.461345779270e-01, 1.993209021885e-05, 2.7394e+01, 6.6359e-01, - 1DIAGNOSTIC, 36, -9.461874819593e-01, 1.735317805505e-05, 2.8063e+01, 6.6918e-01, - 1DIAGNOSTIC, 37, -9.462392224399e-01, 1.508007130619e-05, 2.8729e+01, 6.6580e-01, - 1DIAGNOSTIC, 38, -9.462922773717e-01, 1.313219712905e-05, 2.9391e+01, 6.6250e-01, - 1DIAGNOSTIC, 39, -9.463315692059e-01, 1.143369484273e-05, 3.0054e+01, 6.6322e-01, - 1DIAGNOSTIC, 40, -9.463699576904e-01, 9.998419276399e-06, 3.0709e+01, 6.5429e-01, - 1DIAGNOSTIC, 41, -9.464037085436e-01, 8.774777104623e-06, 3.1358e+01, 6.4896e-01, - 1DIAGNOSTIC, 42, -9.464330275035e-01, 7.740215119224e-06, 3.2012e+01, 6.5402e-01, - 1DIAGNOSTIC, 43, -9.464589068806e-01, 6.870413830736e-06, 3.2666e+01, 6.5477e-01, - 1DIAGNOSTIC, 44, -9.464811569343e-01, 6.070547300844e-06, 3.3335e+01, 6.6904e-01, - 1DIAGNOSTIC, 45, -9.464989877531e-01, 5.361950316311e-06, 3.4000e+01, 6.6497e-01, - 1DIAGNOSTIC, 46, -9.465113369340e-01, 4.662283785012e-06, 3.4660e+01, 6.6003e-01, - 1DIAGNOSTIC, 47, -9.465087918438e-01, 3.923102745124e-06, 3.5310e+01, 6.4982e-01, - 1DIAGNOSTIC, 48, -9.465172860161e-01, 3.290147165928e-06, 3.5975e+01, 6.6452e-01, - 1DIAGNOSTIC, 49, -9.465234435872e-01, 2.706765046968e-06, 3.6644e+01, 6.6892e-01, - 1DIAGNOSTIC, 50, -9.465256045970e-01, 2.190364440820e-06, 3.7312e+01, 6.6867e-01, - 1DIAGNOSTIC, 51, -9.465191721057e-01, 1.705675317511e-06, 3.7993e+01, 6.8074e-01, - 1DIAGNOSTIC, 52, -9.465216316795e-01, 1.321260099142e-06, 3.8677e+01, 6.8418e-01, - 1DIAGNOSTIC, 53, -9.465264807507e-01, 1.055838294701e-06, 3.9361e+01, 6.8382e-01, - 1DIAGNOSTIC, 54, -9.465261119150e-01, 8.748838821772e-07, 4.0018e+01, 6.5689e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.029555006340e-01, 1.797693134862e+308, 4.5666e+01, 5.6485e+00, - 1DIAGNOSTIC, 2, -9.062490351969e-01, 1.797693134862e+308, 5.0972e+01, 5.3056e+00, - 1DIAGNOSTIC, 3, -9.090386938648e-01, 1.797693134862e+308, 5.6324e+01, 5.3520e+00, - 1DIAGNOSTIC, 4, -9.116676028160e-01, 1.797693134862e+308, 6.1691e+01, 5.3674e+00, - 1DIAGNOSTIC, 5, -9.140677686277e-01, 1.797693134862e+308, 6.7048e+01, 5.3566e+00, - 1DIAGNOSTIC, 6, -9.162947283871e-01, 1.797693134862e+308, 7.2359e+01, 5.3111e+00, - 1DIAGNOSTIC, 7, -9.182521535360e-01, 1.797693134862e+308, 7.7717e+01, 5.3575e+00, - 1DIAGNOSTIC, 8, -9.199000917540e-01, 1.797693134862e+308, 8.3060e+01, 5.3439e+00, - 1DIAGNOSTIC, 9, -9.213120979832e-01, 1.797693134862e+308, 8.8416e+01, 5.3552e+00, - 1DIAGNOSTIC, 10, -9.225339340049e-01, 1.364982564505e-03, 9.3743e+01, 5.3271e+00, - 1DIAGNOSTIC, 11, -9.236069079810e-01, 1.103076452144e-03, 9.9097e+01, 5.3547e+00, - 1DIAGNOSTIC, 12, -9.244340707570e-01, 8.918416392083e-04, 1.0445e+02, 5.3538e+00, - 1DIAGNOSTIC, 13, -9.251764776418e-01, 7.163782382727e-04, 1.0985e+02, 5.4006e+00, - 1DIAGNOSTIC, 14, -9.257448373727e-01, 5.712895996177e-04, 1.1522e+02, 5.3665e+00, - 1DIAGNOSTIC, 15, -9.262626917845e-01, 4.532551659778e-04, 1.2060e+02, 5.3845e+00, - 1DIAGNOSTIC, 16, -9.267487055757e-01, 3.605450734278e-04, 1.2596e+02, 5.3621e+00, - 1DIAGNOSTIC, 17, -9.272023629177e-01, 2.891676974455e-04, 1.3135e+02, 5.3867e+00, - 1DIAGNOSTIC, 18, -9.276295659703e-01, 2.344708804719e-04, 1.3667e+02, 5.3187e+00, - 1DIAGNOSTIC, 19, -9.280356165187e-01, 1.932348875463e-04, 1.4205e+02, 5.3757e+00, - 1DIAGNOSTIC, 20, -9.284192124615e-01, 1.628371651374e-04, 1.4739e+02, 5.3464e+00, - 1DIAGNOSTIC, 21, -9.287719961525e-01, 1.410589342906e-04, 1.5278e+02, 5.3888e+00, - 1DIAGNOSTIC, 22, -9.290996586640e-01, 1.242263753855e-04, 1.5814e+02, 5.3561e+00, - 1DIAGNOSTIC, 23, -9.293364024425e-01, 1.103640917539e-04, 1.6350e+02, 5.3627e+00, - 1DIAGNOSTIC, 24, -9.295021727479e-01, 9.677616155285e-05, 1.6887e+02, 5.3724e+00, - 1DIAGNOSTIC, 25, -9.295387596135e-01, 8.206974138173e-05, 1.7426e+02, 5.3840e+00, - 1DIAGNOSTIC, 26, -9.294819177597e-01, 6.593400962740e-05, 1.7961e+02, 5.3497e+00, - 1DIAGNOSTIC, 27, -9.293646599662e-01, 4.870161263798e-05, 1.8499e+02, 5.3798e+00, - 1DIAGNOSTIC, 28, -9.292053332642e-01, 3.113252525984e-05, 1.9034e+02, 5.3509e+00, - 1DIAGNOSTIC, 29, -9.290131853756e-01, 1.419091640679e-05, 1.9570e+02, 5.3612e+00, - 1DIAGNOSTIC, 30, -9.288043907426e-01, -1.074729944352e-06, 2.0105e+02, 5.3564e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.018111972495e-01, 1.797693134862e+308, 2.4479e+02, 4.3739e+01, - 1DIAGNOSTIC, 2, -9.031446194467e-01, 1.797693134862e+308, 2.8885e+02, 4.4062e+01, - 1DIAGNOSTIC, 3, -9.046524712154e-01, 1.797693134862e+308, 3.3352e+02, 4.4668e+01, - 1DIAGNOSTIC, 4, -9.061600633933e-01, 1.797693134862e+308, 3.7863e+02, 4.5109e+01, - 1DIAGNOSTIC, 5, -9.076852435783e-01, 1.797693134862e+308, 4.2362e+02, 4.4987e+01, - 1DIAGNOSTIC, 6, -9.092447444699e-01, 1.797693134862e+308, 4.6823e+02, 4.4616e+01, - 1DIAGNOSTIC, 7, -9.107519144196e-01, 1.797693134862e+308, 5.1303e+02, 4.4798e+01, - 1DIAGNOSTIC, 8, -9.121540244905e-01, 1.797693134862e+308, 5.5751e+02, 4.4479e+01, - 1DIAGNOSTIC, 9, -9.134579648987e-01, 1.797693134862e+308, 6.0074e+02, 4.3226e+01, - 1DIAGNOSTIC, 10, -9.146175293674e-01, 9.256883873543e-04, 6.4442e+02, 4.3679e+01, - 1DIAGNOSTIC, 11, -9.156479293152e-01, 8.177233665651e-04, 6.8776e+02, 4.3341e+01, - 1DIAGNOSTIC, 12, -9.165991493567e-01, 7.134756796390e-04, 7.3097e+02, 4.3215e+01, - 1DIAGNOSTIC, 13, -9.174866428683e-01, 6.180153205200e-04, 7.7421e+02, 4.3240e+01, - 1DIAGNOSTIC, 14, -9.182963998260e-01, 5.313836153351e-04, 8.1751e+02, 4.3295e+01, - 1DIAGNOSTIC, 15, -9.190442089665e-01, 4.547431246420e-04, 8.6098e+02, 4.3476e+01, - 1DIAGNOSTIC, 16, -9.197315165879e-01, 3.894877217452e-04, 9.0430e+02, 4.3315e+01, - 1DIAGNOSTIC, 17, -9.202713610529e-01, 3.333330083615e-04, 9.4780e+02, 4.3505e+01, - 1DIAGNOSTIC, 18, -9.207715465335e-01, 2.853582078487e-04, 9.9133e+02, 4.3529e+01, - 1DIAGNOSTIC, 19, -9.211277251486e-01, 2.430382710718e-04, 1.0348e+03, 4.3484e+01, - 1DIAGNOSTIC, 20, -9.214693526008e-01, 2.056430981287e-04, 1.0784e+03, 4.3541e+01, - Elapsed time (stage 2): 1079 - - -Total elapsed time: 1131 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:10 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:10 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:13 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:17 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:20 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 27448 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:20 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:23 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:23 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 27545 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:23 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/anat/sub-PNC008_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:26 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 27591 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:27 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 27596 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:27 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:31 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:33 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:33 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:34 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:35 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:37 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:37 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:38 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:38 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:40 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/surf/sub-PNC008_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC008_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC008 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:41 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:18:50 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03/sub-PNC008_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC008 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:01 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC008 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:01 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC008_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC008 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 28317 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:03 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:03 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc/sub-PNC008_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/xfm/sub-PNC008_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 28457 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:05 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:05 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC008_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC008_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 66.317 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/logs/proc_func_19-03-2024-32155.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:10 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC008 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC008/ses-03/QC/sub-PNC008_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/6905_micapipe_proc-func_sub-PNC008_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC008* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 66.383 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC008_ses-03 -========================reprocessing without filter=================== -sub-PNC009_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC009 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC009 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC009 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC009 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:15 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:19:15 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-1_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:21:17 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:23:22 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:23:37 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.10 (mm) at sub-brick 118 -++ Max delta displ in automask = 0.78 (mm) at sub-brick 97 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:36:13 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:36:30 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-2_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:38:37 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:40:44 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-01/func/sub-PNC009_ses-01_task-rest_echo-3_bold.nii.gz is 43.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:42:54 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.422 -3.723 1.097 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.4 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.549 -5.469 1.724 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.3 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:47:35 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:48:02 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x562b684766f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.8983, 1.9] - Origin: [106.619, 44.8944, -127.773] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.8983 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562b682ed730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562b6848d320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x562b68479fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.3093, 116.5, -137.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562b6847fe10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562b68c8a230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x562b68c885c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.8983, 1.9] - Origin: [106.619, 44.8944, -127.773] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.8983 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562b6847c3f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562b697b4450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x562b68c86da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [74.3093, 116.5, -137.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x562b68483360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x562b69fae780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.098939591784e-01, 1.797693134862e+308, 4.5908e-02, 4.5907e-02, - 2DIAGNOSTIC, 2, -6.117992081546e-01, 1.797693134862e+308, 4.7265e-02, 1.3571e-03, - 2DIAGNOSTIC, 3, -6.149893004231e-01, 1.797693134862e+308, 4.8614e-02, 1.3492e-03, - 2DIAGNOSTIC, 4, -6.205300854883e-01, 1.797693134862e+308, 5.0007e-02, 1.3928e-03, - 2DIAGNOSTIC, 5, -6.230022888675e-01, 1.797693134862e+308, 5.1196e-02, 1.1890e-03, - 2DIAGNOSTIC, 6, -6.383761889078e-01, 1.797693134862e+308, 5.2591e-02, 1.3950e-03, - 2DIAGNOSTIC, 7, -6.958192815860e-01, 1.797693134862e+308, 5.4692e-02, 2.1012e-03, - 2DIAGNOSTIC, 8, -6.970414234710e-01, 1.797693134862e+308, 5.5855e-02, 1.1630e-03, - 2DIAGNOSTIC, 9, -7.005854049421e-01, 1.797693134862e+308, 5.7254e-02, 1.3990e-03, - 2DIAGNOSTIC, 10, -7.076842299067e-01, 1.180147482700e-02, 5.8909e-02, 1.6551e-03, - 2DIAGNOSTIC, 11, -7.091286149313e-01, 1.095532565162e-02, 6.0279e-02, 1.3700e-03, - 2DIAGNOSTIC, 12, -7.123609852031e-01, 9.432157232381e-03, 6.1872e-02, 1.5931e-03, - 2DIAGNOSTIC, 13, -7.136086192993e-01, 7.455151015085e-03, 6.3433e-02, 1.5609e-03, - 2DIAGNOSTIC, 14, -7.146208389089e-01, 5.334051079895e-03, 6.4750e-02, 1.3170e-03, - 2DIAGNOSTIC, 15, -7.174130306421e-01, 3.181357969556e-03, 6.6066e-02, 1.3151e-03, - 2DIAGNOSTIC, 16, -7.187224944820e-01, 1.418581016173e-03, 6.7380e-02, 1.3149e-03, - 2DIAGNOSTIC, 17, -7.200525322529e-01, 1.196844858919e-03, 6.9783e-02, 2.4030e-03, - 2DIAGNOSTIC, 18, -7.204062340416e-01, 9.275833836277e-04, 7.1090e-02, 1.3070e-03, - 2DIAGNOSTIC, 19, -7.209730572734e-01, 6.897617900462e-04, 7.2618e-02, 1.5280e-03, - 2DIAGNOSTIC, 20, -7.212356361810e-01, 5.654935349728e-04, 7.4183e-02, 1.5650e-03, - 2DIAGNOSTIC, 21, -7.213284376582e-01, 4.297446052847e-04, 7.5711e-02, 1.5280e-03, - 2DIAGNOSTIC, 22, -7.214066241979e-01, 3.292940896258e-04, 7.6993e-02, 1.2820e-03, - 2DIAGNOSTIC, 23, -7.216254909012e-01, 2.339602345629e-04, 7.9013e-02, 2.0199e-03, - 2DIAGNOSTIC, 24, -7.217520922491e-01, 1.437024403199e-04, 8.0399e-02, 1.3859e-03, - 2DIAGNOSTIC, 25, -7.218083430588e-01, 9.407533746554e-05, 8.1727e-02, 1.3280e-03, - 2DIAGNOSTIC, 26, -7.219126803247e-01, 6.163758792975e-05, 8.3361e-02, 1.6341e-03, - 2DIAGNOSTIC, 27, -7.229253133093e-01, 6.152023811572e-05, 8.5296e-02, 1.9350e-03, - 2DIAGNOSTIC, 28, -7.248533234467e-01, 8.841503982905e-05, 8.8290e-02, 2.9941e-03, - 2DIAGNOSTIC, 29, -7.249944360644e-01, 1.144192252908e-04, 9.0214e-02, 1.9238e-03, - 2DIAGNOSTIC, 30, -7.252183559290e-01, 1.350189123529e-04, 9.2153e-02, 1.9391e-03, - 2DIAGNOSTIC, 31, -7.256921894439e-01, 1.493230435066e-04, 9.3628e-02, 1.4749e-03, - 2DIAGNOSTIC, 32, -7.258288893508e-01, 1.509254750003e-04, 9.5094e-02, 1.4660e-03, - 2DIAGNOSTIC, 33, -7.260574404697e-01, 1.433290383449e-04, 9.6580e-02, 1.4861e-03, - 2DIAGNOSTIC, 34, -7.272930777421e-01, 1.390457884999e-04, 9.8067e-02, 1.4868e-03, - 2DIAGNOSTIC, 35, -7.293551410050e-01, 1.464711612730e-04, 1.0056e-01, 2.4939e-03, - 2DIAGNOSTIC, 36, -7.296278175436e-01, 1.432827183848e-04, 1.0204e-01, 1.4801e-03, - 2DIAGNOSTIC, 37, -7.299577162600e-01, 1.412127925139e-04, 1.0352e-01, 1.4789e-03, - 2DIAGNOSTIC, 38, -7.302851969450e-01, 1.501398287478e-04, 1.0548e-01, 1.9600e-03, - 2DIAGNOSTIC, 39, -7.304606126487e-01, 1.473542121972e-04, 1.0717e-01, 1.6928e-03, - 2DIAGNOSTIC, 40, -7.312825261683e-01, 1.408417268860e-04, 1.0893e-01, 1.7571e-03, - 2DIAGNOSTIC, 41, -7.303458924185e-01, 1.166621306709e-04, 1.1061e-01, 1.6811e-03, - 2DIAGNOSTIC, 42, -7.367431397525e-01, 1.458961623923e-04, 1.1254e-01, 1.9310e-03, - 2DIAGNOSTIC, 43, -7.391899160627e-01, 1.830378676406e-04, 1.1424e-01, 1.7021e-03, - 2DIAGNOSTIC, 44, -7.412756097584e-01, 2.306993064448e-04, 1.1593e-01, 1.6820e-03, - 2DIAGNOSTIC, 45, -7.434189077925e-01, 2.922091696675e-04, 1.1765e-01, 1.7281e-03, - 2DIAGNOSTIC, 46, -7.452152333725e-01, 3.409641734495e-04, 1.1934e-01, 1.6880e-03, - 2DIAGNOSTIC, 47, -7.455261880938e-01, 3.596142731971e-04, 1.2078e-01, 1.4389e-03, - 2DIAGNOSTIC, 48, -7.457671448680e-01, 3.475422207519e-04, 1.2254e-01, 1.7622e-03, - 2DIAGNOSTIC, 49, -7.460767097105e-01, 3.070861414874e-04, 1.2447e-01, 1.9238e-03, - 2DIAGNOSTIC, 50, -7.463784251658e-01, 2.486802907445e-04, 1.2665e-01, 2.1811e-03, - 2DIAGNOSTIC, 51, -7.471350102059e-01, 1.662454166448e-04, 1.2859e-01, 1.9410e-03, - 2DIAGNOSTIC, 52, -7.472753983908e-01, 1.210431350805e-04, 1.3087e-01, 2.2790e-03, - 2DIAGNOSTIC, 53, -7.476648269945e-01, 8.736035931742e-05, 1.3319e-01, 2.3201e-03, - 2DIAGNOSTIC, 54, -7.483107612875e-01, 6.648015405943e-05, 1.3475e-01, 1.5640e-03, - 2DIAGNOSTIC, 55, -7.485305171506e-01, 5.667108821934e-05, 1.3653e-01, 1.7760e-03, - 2DIAGNOSTIC, 56, -7.501306569280e-01, 6.585678303859e-05, 1.3826e-01, 1.7321e-03, - 2DIAGNOSTIC, 57, -7.505984215329e-01, 7.359316835497e-05, 1.4006e-01, 1.8029e-03, - 2DIAGNOSTIC, 58, -7.518648341989e-01, 8.437835789544e-05, 1.4237e-01, 2.3119e-03, - 2DIAGNOSTIC, 59, -7.534608238213e-01, 9.940808028734e-05, 1.4394e-01, 1.5619e-03, - 2DIAGNOSTIC, 60, -7.536949534026e-01, 1.076240507644e-04, 1.4547e-01, 1.5380e-03, - 2DIAGNOSTIC, 61, -7.538712236759e-01, 1.114029708867e-04, 1.4697e-01, 1.4961e-03, - 2DIAGNOSTIC, 62, -7.541298542155e-01, 1.069682004128e-04, 1.4849e-01, 1.5149e-03, - 2DIAGNOSTIC, 63, -7.548750240860e-01, 9.941935655552e-05, 1.5078e-01, 2.2938e-03, - 2DIAGNOSTIC, 64, -7.549244079552e-01, 8.671790219652e-05, 1.5229e-01, 1.5090e-03, - 2DIAGNOSTIC, 65, -7.550057439700e-01, 6.784269666164e-05, 1.5379e-01, 1.5030e-03, - 2DIAGNOSTIC, 66, -7.553067013651e-01, 5.462286935347e-05, 1.5595e-01, 2.1620e-03, - 2DIAGNOSTIC, 67, -7.555951957444e-01, 4.088084982064e-05, 1.5743e-01, 1.4741e-03, - 2DIAGNOSTIC, 68, -7.557381842208e-01, 3.148977268319e-05, 1.5888e-01, 1.4560e-03, - 2DIAGNOSTIC, 69, -7.559398144870e-01, 2.963162674510e-05, 1.6033e-01, 1.4439e-03, - 2DIAGNOSTIC, 70, -7.573214143484e-01, 3.412715919497e-05, 1.6253e-01, 2.1989e-03, - 2DIAGNOSTIC, 71, -7.576400021111e-01, 3.776672486490e-05, 1.6399e-01, 1.4601e-03, - 2DIAGNOSTIC, 72, -7.580428057419e-01, 4.122425663436e-05, 1.6573e-01, 1.7440e-03, - 2DIAGNOSTIC, 73, -7.586917475677e-01, 4.821609995482e-05, 1.6749e-01, 1.7579e-03, - 2DIAGNOSTIC, 74, -7.597803539578e-01, 5.636377984771e-05, 1.6946e-01, 1.9710e-03, - 2DIAGNOSTIC, 75, -7.600083351236e-01, 6.027097776550e-05, 1.7121e-01, 1.7550e-03, - 2DIAGNOSTIC, 76, -7.596624501474e-01, 5.807773711887e-05, 1.7276e-01, 1.5459e-03, - 2DIAGNOSTIC, 77, -7.610544206274e-01, 5.911851206956e-05, 1.7424e-01, 1.4749e-03, - 2DIAGNOSTIC, 78, -7.609671446183e-01, 5.454299204513e-05, 1.7601e-01, 1.7738e-03, - 2DIAGNOSTIC, 79, -7.624100977437e-01, 5.280687092839e-05, 1.7780e-01, 1.7929e-03, - 2DIAGNOSTIC, 80, -7.654504903660e-01, 6.752432091604e-05, 1.7999e-01, 2.1839e-03, - 2DIAGNOSTIC, 81, -7.695323790243e-01, 9.628055711841e-05, 1.8170e-01, 1.7102e-03, - 2DIAGNOSTIC, 82, -7.700399092818e-01, 1.189833767643e-04, 1.8328e-01, 1.5860e-03, - 2DIAGNOSTIC, 83, -7.697163222153e-01, 1.313768720834e-04, 1.8481e-01, 1.5230e-03, - 2DIAGNOSTIC, 84, -7.701618264563e-01, 1.381847671438e-04, 1.8627e-01, 1.4660e-03, - 2DIAGNOSTIC, 85, -7.716597906000e-01, 1.391530876561e-04, 1.8824e-01, 1.9681e-03, - 2DIAGNOSTIC, 86, -7.719693634530e-01, 1.258834315549e-04, 1.9045e-01, 2.2140e-03, - 2DIAGNOSTIC, 87, -7.714129889157e-01, 1.048223893805e-04, 1.9191e-01, 1.4579e-03, - 2DIAGNOSTIC, 88, -7.726562884594e-01, 7.974426742667e-05, 1.9339e-01, 1.4770e-03, - 2DIAGNOSTIC, 89, -7.770215711189e-01, 7.255204456743e-05, 1.9484e-01, 1.4560e-03, - 2DIAGNOSTIC, 90, -7.775100083689e-01, 7.261457380032e-05, 1.9634e-01, 1.4989e-03, - 2DIAGNOSTIC, 91, -7.796167136841e-01, 9.219374833846e-05, 1.9783e-01, 1.4892e-03, - 2DIAGNOSTIC, 92, -7.844649946208e-01, 1.252144889498e-04, 2.0030e-01, 2.4710e-03, - 2DIAGNOSTIC, 93, -7.890698623214e-01, 1.626548586049e-04, 2.0179e-01, 1.4889e-03, - 2DIAGNOSTIC, 94, -7.916581880682e-01, 1.953224292761e-04, 2.0348e-01, 1.6849e-03, - 2DIAGNOSTIC, 95, -7.963749512217e-01, 2.337681189260e-04, 2.0525e-01, 1.7741e-03, - 2DIAGNOSTIC, 96, -8.105377290503e-01, 3.069305708570e-04, 2.0700e-01, 1.7529e-03, - 2DIAGNOSTIC, 97, -8.144078867489e-01, 3.603874886607e-04, 2.0873e-01, 1.7259e-03, - 2DIAGNOSTIC, 98, -8.169731322952e-01, 3.925506787465e-04, 2.1023e-01, 1.4980e-03, - 2DIAGNOSTIC, 99, -8.239986547627e-01, 4.310843743067e-04, 2.1202e-01, 1.7910e-03, - 2DIAGNOSTIC, 100, -8.378252506730e-01, 4.812852901422e-04, 2.1469e-01, 2.6700e-03, - 2DIAGNOSTIC, 101, -8.388743324929e-01, 4.936107127179e-04, 2.1614e-01, 1.4520e-03, - 2DIAGNOSTIC, 102, -8.418597342320e-01, 4.877038016686e-04, 2.1761e-01, 1.4739e-03, - 2DIAGNOSTIC, 103, -8.471223732391e-01, 4.724216754132e-04, 2.1906e-01, 1.4501e-03, - 2DIAGNOSTIC, 104, -8.492341846107e-01, 4.283887855380e-04, 2.2056e-01, 1.4961e-03, - 2DIAGNOSTIC, 105, -8.498139105341e-01, 3.612033912414e-04, 2.2229e-01, 1.7281e-03, - 2DIAGNOSTIC, 106, -8.502367033659e-01, 3.131076644526e-04, 2.2372e-01, 1.4319e-03, - 2DIAGNOSTIC, 107, -8.520472805147e-01, 2.566312489822e-04, 2.2569e-01, 1.9670e-03, - 2DIAGNOSTIC, 108, -8.514894917957e-01, 1.830282653842e-04, 2.2719e-01, 1.5051e-03, - 2DIAGNOSTIC, 109, -8.536543099891e-01, 1.240409962503e-04, 2.2967e-01, 2.4779e-03, - 2DIAGNOSTIC, 110, -8.539263318831e-01, 1.029637404340e-04, 2.3116e-01, 1.4920e-03, - 2DIAGNOSTIC, 111, -8.560841718954e-01, 8.332790409610e-05, 2.3286e-01, 1.6980e-03, - 2DIAGNOSTIC, 112, -8.572243187584e-01, 6.940112410894e-05, 2.3439e-01, 1.5261e-03, - 2DIAGNOSTIC, 113, -8.577734682146e-01, 6.829305162648e-05, 2.3607e-01, 1.6851e-03, - 2DIAGNOSTIC, 114, -8.586660519874e-01, 7.060932427429e-05, 2.3826e-01, 2.1851e-03, - 2DIAGNOSTIC, 115, -8.589618037353e-01, 6.887043724535e-05, 2.3975e-01, 1.4961e-03, - 2DIAGNOSTIC, 116, -8.591959053712e-01, 6.248018195060e-05, 2.4127e-01, 1.5149e-03, - 2DIAGNOSTIC, 117, -8.596017945322e-01, 5.739810126277e-05, 2.4302e-01, 1.7471e-03, - 2DIAGNOSTIC, 118, -8.597503847069e-01, 4.544080015844e-05, 2.4495e-01, 1.9341e-03, - 2DIAGNOSTIC, 119, -8.598498096236e-01, 3.654068789059e-05, 2.4642e-01, 1.4660e-03, - 2DIAGNOSTIC, 120, -8.613310604973e-01, 2.963174249040e-05, 2.4810e-01, 1.6840e-03, - 2DIAGNOSTIC, 121, -8.650423702847e-01, 3.796719618714e-05, 2.4985e-01, 1.7459e-03, - 2DIAGNOSTIC, 122, -8.635923157931e-01, 4.125813452887e-05, 2.5133e-01, 1.4858e-03, - 2DIAGNOSTIC, 123, -8.642487585129e-01, 4.444043117476e-05, 2.5282e-01, 1.4930e-03, - 2DIAGNOSTIC, 124, -8.647379721253e-01, 4.749011012574e-05, 2.5458e-01, 1.7540e-03, - 2DIAGNOSTIC, 125, -8.644456143051e-01, 4.571597906129e-05, 2.5655e-01, 1.9691e-03, - 2DIAGNOSTIC, 126, -8.648529440828e-01, 4.132708439474e-05, 2.5803e-01, 1.4851e-03, - 2DIAGNOSTIC, 127, -8.655775985562e-01, 3.640795696729e-05, 2.5954e-01, 1.5111e-03, - 2DIAGNOSTIC, 128, -8.682359099017e-01, 3.634686102965e-05, 2.6157e-01, 2.0249e-03, - 2DIAGNOSTIC, 129, -8.728420119215e-01, 4.604504432316e-05, 2.6400e-01, 2.4290e-03, - 2DIAGNOSTIC, 130, -8.730128046094e-01, 5.527298962590e-05, 2.6575e-01, 1.7490e-03, - 2DIAGNOSTIC, 131, -8.733603387097e-01, 7.087137443668e-05, 2.6723e-01, 1.4791e-03, - 2DIAGNOSTIC, 132, -8.725704644326e-01, 7.315819202222e-05, 2.6872e-01, 1.4920e-03, - 2DIAGNOSTIC, 133, -8.727859192077e-01, 7.062878229851e-05, 2.7025e-01, 1.5361e-03, - 2DIAGNOSTIC, 134, -8.728797346445e-01, 6.272113047293e-05, 2.7175e-01, 1.4970e-03, - 2DIAGNOSTIC, 135, -8.729879651284e-01, 4.840213430166e-05, 2.7326e-01, 1.5042e-03, - 2DIAGNOSTIC, 136, -8.731873843552e-01, 3.152225124518e-05, 2.7497e-01, 1.7140e-03, - 2DIAGNOSTIC, 137, -8.732414594327e-01, 1.395269154301e-05, 2.7732e-01, 2.3470e-03, - 2DIAGNOSTIC, 138, -8.733146644178e-01, 2.286459227728e-06, 2.7886e-01, 1.5390e-03, - 2DIAGNOSTIC, 139, -8.733602032194e-01, 2.856007494339e-06, 2.8040e-01, 1.5421e-03, - 2DIAGNOSTIC, 140, -8.736231564718e-01, 4.251953082578e-06, 2.8262e-01, 2.2240e-03, - 2DIAGNOSTIC, 141, -8.738758783521e-01, 6.841588804811e-06, 2.8417e-01, 1.5521e-03, - 2DIAGNOSTIC, 142, -8.739284568996e-01, 6.828524385246e-06, 2.8570e-01, 1.5221e-03, - 2DIAGNOSTIC, 143, -8.739568770855e-01, 6.816643588904e-06, 2.8718e-01, 1.4830e-03, - 2DIAGNOSTIC, 144, -8.740046303467e-01, 6.532142446967e-06, 2.8965e-01, 2.4679e-03, - 2DIAGNOSTIC, 145, -8.740494400038e-01, 6.003267449895e-06, 2.9160e-01, 1.9560e-03, - 2DIAGNOSTIC, 146, -8.731764553442e-01, 3.227047658191e-06, 2.9401e-01, 2.4071e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.835680448472e-01, 1.797693134862e+308, 3.3984e-01, 4.5830e-02, - 2DIAGNOSTIC, 2, -4.830459132772e-01, 1.797693134862e+308, 3.4239e-01, 2.5520e-03, - 2DIAGNOSTIC, 3, -4.849077276848e-01, 1.797693134862e+308, 3.4507e-01, 2.6801e-03, - 2DIAGNOSTIC, 4, -4.868917669440e-01, 1.797693134862e+308, 3.4778e-01, 2.7082e-03, - 2DIAGNOSTIC, 5, -4.876639311287e-01, 1.797693134862e+308, 3.5000e-01, 2.2230e-03, - 2DIAGNOSTIC, 6, -4.889305228250e-01, 1.797693134862e+308, 3.5217e-01, 2.1720e-03, - 2DIAGNOSTIC, 7, -4.959051971946e-01, 1.797693134862e+308, 3.5426e-01, 2.0850e-03, - 2DIAGNOSTIC, 8, -5.043086292153e-01, 1.797693134862e+308, 3.5670e-01, 2.4362e-03, - 2DIAGNOSTIC, 9, -5.175565124926e-01, 1.797693134862e+308, 3.5909e-01, 2.3940e-03, - 2DIAGNOSTIC, 10, -5.213860014259e-01, 4.937073368609e-03, 3.6143e-01, 2.3370e-03, - 2DIAGNOSTIC, 11, -5.299576096329e-01, 5.663796016138e-03, 3.6402e-01, 2.5918e-03, - 2DIAGNOSTIC, 12, -5.542015641183e-01, 6.843644257371e-03, 3.6664e-01, 2.6181e-03, - 2DIAGNOSTIC, 13, -5.609423439742e-01, 7.542080774214e-03, 3.6963e-01, 2.9910e-03, - 2DIAGNOSTIC, 14, -5.666268540220e-01, 7.752641754948e-03, 3.7198e-01, 2.3558e-03, - 2DIAGNOSTIC, 15, -5.898397006391e-01, 8.099966880413e-03, 3.7435e-01, 2.3620e-03, - 2DIAGNOSTIC, 16, -6.003547000682e-01, 8.032136403673e-03, 3.7747e-01, 3.1228e-03, - 2DIAGNOSTIC, 17, -6.058104800819e-01, 7.617273543706e-03, 3.8260e-01, 5.1310e-03, - 2DIAGNOSTIC, 18, -6.058323438560e-01, 6.805375352593e-03, 3.8508e-01, 2.4850e-03, - 2DIAGNOSTIC, 19, -6.064344519701e-01, 5.862539259033e-03, 3.8751e-01, 2.4290e-03, - 2DIAGNOSTIC, 20, -6.074637363889e-01, 4.606508576029e-03, 3.8989e-01, 2.3789e-03, - 2DIAGNOSTIC, 21, -6.086130663692e-01, 3.279656014487e-03, 3.9220e-01, 2.3110e-03, - 2DIAGNOSTIC, 22, -6.094351668565e-01, 2.379240147670e-03, 3.9452e-01, 2.3201e-03, - 2DIAGNOSTIC, 23, -6.105566936982e-01, 1.527754852102e-03, 3.9684e-01, 2.3191e-03, - 2DIAGNOSTIC, 24, -6.164674909940e-01, 8.513528422368e-04, 3.9980e-01, 2.9600e-03, - 2DIAGNOSTIC, 25, -6.175052574846e-01, 6.453556733180e-04, 4.0208e-01, 2.2812e-03, - 2DIAGNOSTIC, 26, -6.179682934675e-01, 6.101599209028e-04, 4.0442e-01, 2.3339e-03, - 2DIAGNOSTIC, 27, -6.186587476550e-01, 6.383657202679e-04, 4.0706e-01, 2.6388e-03, - 2DIAGNOSTIC, 28, -6.204947187450e-01, 6.375459635821e-04, 4.1003e-01, 2.9690e-03, - 2DIAGNOSTIC, 29, -6.210147663635e-01, 5.938818540875e-04, 4.1305e-01, 3.0220e-03, - 2DIAGNOSTIC, 30, -6.213117892545e-01, 5.193439457706e-04, 4.1540e-01, 2.3530e-03, - 2DIAGNOSTIC, 31, -6.232555411695e-01, 4.527963198092e-04, 4.1817e-01, 2.7699e-03, - 2DIAGNOSTIC, 32, -6.234660577378e-01, 3.641503219137e-04, 4.2062e-01, 2.4550e-03, - 2DIAGNOSTIC, 33, -6.238807627038e-01, 2.677857948914e-04, 4.2306e-01, 2.4302e-03, - 2DIAGNOSTIC, 34, -6.245082072292e-01, 2.478355376545e-04, 4.2600e-01, 2.9480e-03, - 2DIAGNOSTIC, 35, -6.272662832967e-01, 2.594867565550e-04, 4.2919e-01, 3.1891e-03, - 2DIAGNOSTIC, 36, -6.283214932367e-01, 2.655368733354e-04, 4.3233e-01, 3.1371e-03, - 2DIAGNOSTIC, 37, -6.287086212252e-01, 2.599294480639e-04, 4.3509e-01, 2.7559e-03, - 2DIAGNOSTIC, 38, -6.287158041595e-01, 2.546341828676e-04, 4.3753e-01, 2.4459e-03, - 2DIAGNOSTIC, 39, -6.288887930968e-01, 2.344477656051e-04, 4.4056e-01, 3.0279e-03, - 2DIAGNOSTIC, 40, -6.291204761815e-01, 1.984023863849e-04, 4.4295e-01, 2.3940e-03, - 2DIAGNOSTIC, 41, -6.292841078246e-01, 1.702739200777e-04, 4.4594e-01, 2.9881e-03, - 2DIAGNOSTIC, 42, -6.295145507178e-01, 1.329266533603e-04, 4.4823e-01, 2.2929e-03, - 2DIAGNOSTIC, 43, -6.296531739211e-01, 9.145302728949e-05, 4.5053e-01, 2.2988e-03, - 2DIAGNOSTIC, 44, -6.299284955801e-01, 5.264158039399e-05, 4.5284e-01, 2.3031e-03, - 2DIAGNOSTIC, 45, -6.323885004286e-01, 6.663401999200e-05, 4.5634e-01, 3.5069e-03, - 2DIAGNOSTIC, 46, -6.328477980904e-01, 8.880741570610e-05, 4.5865e-01, 2.3060e-03, - 2DIAGNOSTIC, 47, -6.331708106536e-01, 1.090750268785e-04, 4.6101e-01, 2.3611e-03, - 2DIAGNOSTIC, 48, -6.342703957351e-01, 1.295276076650e-04, 4.6400e-01, 2.9919e-03, - 2DIAGNOSTIC, 49, -6.345882629376e-01, 1.412368272162e-04, 4.6638e-01, 2.3751e-03, - 2DIAGNOSTIC, 50, -6.352054948401e-01, 1.468264730762e-04, 4.6917e-01, 2.7950e-03, - 2DIAGNOSTIC, 51, -6.362011135938e-01, 1.489662022878e-04, 4.7343e-01, 4.2620e-03, - 2DIAGNOSTIC, 52, -6.362591706251e-01, 1.395865616720e-04, 4.7619e-01, 2.7521e-03, - 2DIAGNOSTIC, 53, -6.363199565360e-01, 1.193339006826e-04, 4.7894e-01, 2.7509e-03, - 2DIAGNOSTIC, 54, -6.363948927755e-01, 9.110906908207e-05, 4.8133e-01, 2.3949e-03, - 2DIAGNOSTIC, 55, -6.364872089765e-01, 7.741708235007e-05, 4.8401e-01, 2.6801e-03, - 2DIAGNOSTIC, 56, -6.365571123167e-01, 6.129609753406e-05, 4.8629e-01, 2.2819e-03, - 2DIAGNOSTIC, 57, -6.366183961593e-01, 4.298145189506e-05, 4.8860e-01, 2.3041e-03, - 2DIAGNOSTIC, 58, -6.366510403842e-01, 3.067687999504e-05, 4.9089e-01, 2.2919e-03, - 2DIAGNOSTIC, 59, -6.368591048334e-01, 2.012003072342e-05, 4.9350e-01, 2.6090e-03, - 2DIAGNOSTIC, 60, -6.370919403570e-01, 1.452477257609e-05, 4.9610e-01, 2.5990e-03, - 2DIAGNOSTIC, 61, -6.371435394742e-01, 1.589017451011e-05, 4.9902e-01, 2.9221e-03, - 2DIAGNOSTIC, 62, -6.374720979990e-01, 1.872060999236e-05, 5.0130e-01, 2.2790e-03, - 2DIAGNOSTIC, 63, -6.384547047507e-01, 2.750167304627e-05, 5.0417e-01, 2.8760e-03, - 2DIAGNOSTIC, 64, -6.391029407679e-01, 3.853071962927e-05, 5.0770e-01, 3.5219e-03, - 2DIAGNOSTIC, 65, -6.392350907583e-01, 4.712379176925e-05, 5.0996e-01, 2.2621e-03, - 2DIAGNOSTIC, 66, -6.396980342243e-01, 5.490294555548e-05, 5.1264e-01, 2.6829e-03, - 2DIAGNOSTIC, 67, -6.399009995512e-01, 5.902346602879e-05, 5.1505e-01, 2.4090e-03, - 2DIAGNOSTIC, 68, -6.402767025255e-01, 6.006705583301e-05, 5.1739e-01, 2.3410e-03, - 2DIAGNOSTIC, 69, -6.407069127629e-01, 5.958305938756e-05, 5.2089e-01, 3.4940e-03, - 2DIAGNOSTIC, 70, -6.408069090813e-01, 5.570898435348e-05, 5.2315e-01, 2.2681e-03, - 2DIAGNOSTIC, 71, -6.408006312675e-01, 4.701112368613e-05, 5.2539e-01, 2.2330e-03, - 2DIAGNOSTIC, 72, -6.408640442623e-01, 3.653391270901e-05, 5.2768e-01, 2.2922e-03, - 2DIAGNOSTIC, 73, -6.409603552806e-01, 2.970098697851e-05, 5.3011e-01, 2.4312e-03, - 2DIAGNOSTIC, 74, -6.412832228691e-01, 2.635906231315e-05, 5.3300e-01, 2.8899e-03, - 2DIAGNOSTIC, 75, -6.412586757626e-01, 2.119161278366e-05, 5.3561e-01, 2.6119e-03, - 2DIAGNOSTIC, 76, -6.414198429840e-01, 1.808173903416e-05, 5.3947e-01, 3.8540e-03, - 2DIAGNOSTIC, 77, -6.415418797670e-01, 1.529956769865e-05, 5.4179e-01, 2.3241e-03, - 2DIAGNOSTIC, 78, -6.415730721712e-01, 1.349977924577e-05, 5.4438e-01, 2.5890e-03, - 2DIAGNOSTIC, 79, -6.415906373321e-01, 1.310855860879e-05, 5.4671e-01, 2.3310e-03, - 2DIAGNOSTIC, 80, -6.415478163823e-01, 1.185432451785e-05, 5.4926e-01, 2.5470e-03, - 2DIAGNOSTIC, 81, -6.415533776578e-01, 9.544547925781e-06, 5.5155e-01, 2.2922e-03, - 2DIAGNOSTIC, 82, -6.415019614556e-01, 6.466741368161e-06, 5.5382e-01, 2.2721e-03, - 2DIAGNOSTIC, 83, -6.415120135850e-01, 3.438863332638e-06, 5.5619e-01, 2.3730e-03, - 2DIAGNOSTIC, 84, -6.414710882499e-01, 1.776320161117e-06, 5.5849e-01, 2.2988e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.955481576270e-01, 1.797693134862e+308, 6.2613e-01, 6.7640e-02, - 2DIAGNOSTIC, 2, -4.959506966561e-01, 1.797693134862e+308, 6.3847e-01, 1.2341e-02, - 2DIAGNOSTIC, 3, -4.964138632260e-01, 1.797693134862e+308, 6.5033e-01, 1.1852e-02, - 2DIAGNOSTIC, 4, -4.967090748531e-01, 1.797693134862e+308, 6.6211e-01, 1.1780e-02, - 2DIAGNOSTIC, 5, -4.971551663275e-01, 1.797693134862e+308, 6.7524e-01, 1.3130e-02, - 2DIAGNOSTIC, 6, -4.974294532329e-01, 1.797693134862e+308, 6.8608e-01, 1.0847e-02, - 2DIAGNOSTIC, 7, -4.975513608716e-01, 1.797693134862e+308, 6.9658e-01, 1.0492e-02, - 2DIAGNOSTIC, 8, -4.976872703739e-01, 1.797693134862e+308, 7.1147e-01, 1.4891e-02, - 2DIAGNOSTIC, 9, -4.977483530333e-01, 1.797693134862e+308, 7.2200e-01, 1.0538e-02, - 2DIAGNOSTIC, 10, -4.978072853336e-01, 2.983810422297e-04, 7.3581e-01, 1.3803e-02, - 2DIAGNOSTIC, 11, -4.978410643424e-01, 2.163131322038e-04, 7.4779e-01, 1.1978e-02, - 2DIAGNOSTIC, 12, -4.978731044675e-01, 1.492591056198e-04, 7.5861e-01, 1.0821e-02, - 2DIAGNOSTIC, 13, -4.979087555151e-01, 1.011821077197e-04, 7.7216e-01, 1.3549e-02, - 2DIAGNOSTIC, 14, -4.979126434520e-01, 6.284501755480e-05, 7.8404e-01, 1.1885e-02, - 2DIAGNOSTIC, 15, -4.979402288322e-01, 4.196520811463e-05, 7.9453e-01, 1.0485e-02, - 2DIAGNOSTIC, 16, -4.979463381146e-01, 2.999088948683e-05, 8.0661e-01, 1.2086e-02, - 2DIAGNOSTIC, 17, -4.979477270607e-01, 2.090025148732e-05, 8.1709e-01, 1.0474e-02, - 2DIAGNOSTIC, 18, -4.979709856872e-01, 1.609207006064e-05, 8.2886e-01, 1.1771e-02, - 2DIAGNOSTIC, 19, -4.979983009669e-01, 1.307301996958e-05, 8.4145e-01, 1.2595e-02, - 2DIAGNOSTIC, 20, -4.981439188751e-01, 1.511187385318e-05, 8.5860e-01, 1.7150e-02, - 2DIAGNOSTIC, 21, -4.981796316385e-01, 1.747588275633e-05, 8.7155e-01, 1.2950e-02, - 2DIAGNOSTIC, 22, -4.981892461089e-01, 1.922968097639e-05, 8.8390e-01, 1.2353e-02, - 2DIAGNOSTIC, 23, -4.981902592649e-01, 2.013603352487e-05, 8.9491e-01, 1.1007e-02, - 2DIAGNOSTIC, 24, -4.981875960375e-01, 1.921155074423e-05, 9.0530e-01, 1.0393e-02, - 2DIAGNOSTIC, 25, -4.981908695577e-01, 1.733589408170e-05, 9.1556e-01, 1.0260e-02, - 2DIAGNOSTIC, 26, -4.982019681754e-01, 1.445864855903e-05, 9.3067e-01, 1.5104e-02, - 2DIAGNOSTIC, 27, -4.982033399235e-01, 1.063662848242e-05, 9.4187e-01, 1.1198e-02, - 2DIAGNOSTIC, 28, -4.982002420867e-01, 6.640949972526e-06, 9.5277e-01, 1.0903e-02, - 2DIAGNOSTIC, 29, -4.981976752112e-01, 2.824211441904e-06, 9.6225e-01, 9.4762e-03, - 2DIAGNOSTIC, 30, -4.981963279330e-01, 1.827539795336e-06, 9.7169e-01, 9.4430e-03, - 2DIAGNOSTIC, 31, -4.981971780741e-01, 1.485972984834e-06, 9.8252e-01, 1.0827e-02, - 2DIAGNOSTIC, 32, -4.982034688510e-01, 1.403536418594e-06, 9.9201e-01, 9.4919e-03, - 2DIAGNOSTIC, 33, -4.982052826956e-01, 1.339064525381e-06, 1.0016e+00, 9.6169e-03, - 2DIAGNOSTIC, 34, -4.982269512905e-01, 1.564686794277e-06, 1.0115e+00, 9.8739e-03, - 2DIAGNOSTIC, 35, -4.982508153227e-01, 2.147028681933e-06, 1.0216e+00, 1.0113e-02, - 2DIAGNOSTIC, 36, -4.982816721730e-01, 3.236059808676e-06, 1.0315e+00, 9.9010e-03, - 2DIAGNOSTIC, 37, -4.983102267064e-01, 4.499139674267e-06, 1.0521e+00, 2.0568e-02, - 2DIAGNOSTIC, 38, -4.983266995324e-01, 5.548255659862e-06, 1.0633e+00, 1.1200e-02, - 2DIAGNOSTIC, 39, -4.983210041951e-01, 5.974614312409e-06, 1.0759e+00, 1.2623e-02, - 2DIAGNOSTIC, 40, -4.983172648680e-01, 5.819507106406e-06, 1.0873e+00, 1.1375e-02, - 2DIAGNOSTIC, 41, -4.983178249305e-01, 5.209219449867e-06, 1.0973e+00, 1.0043e-02, - 2DIAGNOSTIC, 42, -4.983140520128e-01, 4.236072485890e-06, 1.1074e+00, 1.0099e-02, - 2DIAGNOSTIC, 43, -4.983192407160e-01, 3.067035341604e-06, 1.1173e+00, 9.9010e-03, - 2DIAGNOSTIC, 44, -4.983293926287e-01, 2.141808584551e-06, 1.1270e+00, 9.7029e-03, - 2DIAGNOSTIC, 45, -4.983408970352e-01, 1.564656560343e-06, 1.1368e+00, 9.7780e-03, - 2DIAGNOSTIC, 46, -4.983519545872e-01, 1.440567092136e-06, 1.1467e+00, 9.8720e-03, - 2DIAGNOSTIC, 47, -4.983731617402e-01, 1.847479021211e-06, 1.1576e+00, 1.0939e-02, - 2DIAGNOSTIC, 48, -4.983865776372e-01, 2.477552118928e-06, 1.1686e+00, 1.1012e-02, - 2DIAGNOSTIC, 49, -4.983861168573e-01, 2.834829001434e-06, 1.1822e+00, 1.3602e-02, - 2DIAGNOSTIC, 50, -4.983834419253e-01, 2.898206201540e-06, 1.1988e+00, 1.6578e-02, - 2DIAGNOSTIC, 51, -4.983839936657e-01, 2.758214031069e-06, 1.2085e+00, 9.6741e-03, - 2DIAGNOSTIC, 52, -4.983858229485e-01, 2.393784561548e-06, 1.2181e+00, 9.6631e-03, - 2DIAGNOSTIC, 53, -4.983867381675e-01, 1.933939790345e-06, 1.2278e+00, 9.6650e-03, - 2DIAGNOSTIC, 54, -4.983925893037e-01, 1.533560917675e-06, 1.2375e+00, 9.6970e-03, - 2DIAGNOSTIC, 55, -4.983890717719e-01, 1.140758677423e-06, 1.2483e+00, 1.0773e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.146694219782e-01, 1.797693134862e+308, 1.4163e+00, 1.6805e-01, - Elapsed time (stage 0): 1.4464e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.997434433815e-01, 1.797693134862e+308, 3.6792e-02, 3.6792e-02, - 2DIAGNOSTIC, 2, -1.003334081817e+00, 1.797693134862e+308, 3.8244e-02, 1.4520e-03, - 2DIAGNOSTIC, 3, -1.010284151311e+00, 1.797693134862e+308, 3.9490e-02, 1.2460e-03, - 2DIAGNOSTIC, 4, -1.018890334650e+00, 1.797693134862e+308, 4.0670e-02, 1.1799e-03, - 2DIAGNOSTIC, 5, -1.029784017391e+00, 1.797693134862e+308, 4.1904e-02, 1.2341e-03, - 2DIAGNOSTIC, 6, -1.046100390873e+00, 1.797693134862e+308, 4.3152e-02, 1.2481e-03, - 2DIAGNOSTIC, 7, -1.057979296772e+00, 1.797693134862e+308, 4.4429e-02, 1.2770e-03, - 2DIAGNOSTIC, 8, -1.069534901301e+00, 1.797693134862e+308, 4.6101e-02, 1.6720e-03, - 2DIAGNOSTIC, 9, -1.072272788753e+00, 1.797693134862e+308, 4.7326e-02, 1.2250e-03, - 2DIAGNOSTIC, 10, -1.084045240334e+00, 5.666417647953e-03, 4.9147e-02, 1.8210e-03, - 2DIAGNOSTIC, 11, -1.098573046148e+00, 5.386962271026e-03, 5.0524e-02, 1.3771e-03, - 2DIAGNOSTIC, 12, -1.112580506583e+00, 5.057047445522e-03, 5.1824e-02, 1.2999e-03, - 2DIAGNOSTIC, 13, -1.133161193656e+00, 4.886748621328e-03, 5.3572e-02, 1.7481e-03, - 2DIAGNOSTIC, 14, -1.148167568450e+00, 4.743024792077e-03, 5.4920e-02, 1.3480e-03, - 2DIAGNOSTIC, 15, -1.153315761239e+00, 4.466073500066e-03, 5.7321e-02, 2.4011e-03, - 2DIAGNOSTIC, 16, -1.151918296655e+00, 4.063777947532e-03, 5.8699e-02, 1.3781e-03, - 2DIAGNOSTIC, 17, -1.152416073241e+00, 3.529371698622e-03, 5.9988e-02, 1.2891e-03, - 2DIAGNOSTIC, 18, -1.154243625163e+00, 2.926848639595e-03, 6.1327e-02, 1.3390e-03, - 2DIAGNOSTIC, 19, -1.155888516635e+00, 2.176853952577e-03, 6.2873e-02, 1.5461e-03, - 2DIAGNOSTIC, 20, -1.156769472186e+00, 1.468854435707e-03, 6.4159e-02, 1.2858e-03, - 2DIAGNOSTIC, 21, -1.157450188965e+00, 8.855391416432e-04, 6.5520e-02, 1.3611e-03, - 2DIAGNOSTIC, 22, -1.159763468001e+00, 4.643779377418e-04, 6.7519e-02, 1.9989e-03, - 2DIAGNOSTIC, 23, -1.160911247592e+00, 2.775415961763e-04, 6.9074e-02, 1.5550e-03, - 2DIAGNOSTIC, 24, -1.158735841457e+00, 2.171656712739e-04, 7.0475e-02, 1.4009e-03, - 2DIAGNOSTIC, 25, -1.159481597909e+00, 2.040248566854e-04, 7.1822e-02, 1.3471e-03, - 2DIAGNOSTIC, 26, -1.160308123303e+00, 1.670949826345e-04, 7.3391e-02, 1.5690e-03, - 2DIAGNOSTIC, 27, -1.156634924687e+00, 8.620869546933e-05, 7.5557e-02, 2.1660e-03, - 2DIAGNOSTIC, 28, -1.157860528334e+00, 3.200739931280e-05, 7.7910e-02, 2.3530e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.445454761196e-01, 1.797693134862e+308, 1.2150e-01, 4.3593e-02, - 2DIAGNOSTIC, 2, -7.445725661974e-01, 1.797693134862e+308, 1.2413e-01, 2.6269e-03, - 2DIAGNOSTIC, 3, -7.465868953011e-01, 1.797693134862e+308, 1.2677e-01, 2.6371e-03, - 2DIAGNOSTIC, 4, -7.498804942770e-01, 1.797693134862e+308, 1.2933e-01, 2.5640e-03, - 2DIAGNOSTIC, 5, -7.557641097791e-01, 1.797693134862e+308, 1.3168e-01, 2.3482e-03, - 2DIAGNOSTIC, 6, -7.666137783731e-01, 1.797693134862e+308, 1.3385e-01, 2.1739e-03, - 2DIAGNOSTIC, 7, -7.739357784023e-01, 1.797693134862e+308, 1.3605e-01, 2.1920e-03, - 2DIAGNOSTIC, 8, -7.808593092837e-01, 1.797693134862e+308, 1.3865e-01, 2.6000e-03, - 2DIAGNOSTIC, 9, -7.834183767163e-01, 1.797693134862e+308, 1.4189e-01, 3.2439e-03, - 2DIAGNOSTIC, 10, -7.848623095304e-01, 4.149891292639e-03, 1.4468e-01, 2.7931e-03, - 2DIAGNOSTIC, 11, -7.857233273633e-01, 3.753121786782e-03, 1.4867e-01, 3.9840e-03, - 2DIAGNOSTIC, 12, -7.858981742793e-01, 3.092372519198e-03, 1.5101e-01, 2.3420e-03, - 2DIAGNOSTIC, 13, -7.860810479991e-01, 2.320445462156e-03, 1.5333e-01, 2.3170e-03, - 2DIAGNOSTIC, 14, -7.864833061721e-01, 1.548859410698e-03, 1.5597e-01, 2.6410e-03, - 2DIAGNOSTIC, 15, -7.864059232710e-01, 8.802215008188e-04, 1.5854e-01, 2.5730e-03, - 2DIAGNOSTIC, 16, -7.864525990748e-01, 4.649338542509e-04, 1.6102e-01, 2.4769e-03, - 2DIAGNOSTIC, 17, -7.864835609139e-01, 2.127405627305e-04, 1.6349e-01, 2.4769e-03, - 2DIAGNOSTIC, 18, -7.864789960998e-01, 1.098461520808e-04, 1.6600e-01, 2.5039e-03, - 2DIAGNOSTIC, 19, -7.864933415677e-01, 5.702266763751e-05, 1.6851e-01, 2.5179e-03, - 2DIAGNOSTIC, 20, -7.864311596641e-01, 2.940535003314e-05, 1.7076e-01, 2.2471e-03, - 2DIAGNOSTIC, 21, -7.864120106456e-01, 1.665339715882e-05, 1.7302e-01, 2.2600e-03, - 2DIAGNOSTIC, 22, -7.865894549899e-01, 9.494153297374e-06, 1.7563e-01, 2.6090e-03, - 2DIAGNOSTIC, 23, -7.868255998093e-01, 8.596674201167e-06, 1.7820e-01, 2.5661e-03, - 2DIAGNOSTIC, 24, -7.871125324265e-01, 1.758352457861e-05, 1.8081e-01, 2.6121e-03, - 2DIAGNOSTIC, 25, -7.873237938146e-01, 2.624029677688e-05, 1.8307e-01, 2.2571e-03, - 2DIAGNOSTIC, 26, -7.875934876738e-01, 3.633058425625e-05, 1.8526e-01, 2.1951e-03, - 2DIAGNOSTIC, 27, -7.884110469466e-01, 5.377182633381e-05, 1.8814e-01, 2.8751e-03, - 2DIAGNOSTIC, 28, -7.893423749920e-01, 7.676521366691e-05, 1.9224e-01, 4.1020e-03, - 2DIAGNOSTIC, 29, -7.894323980690e-01, 9.214452471702e-05, 1.9465e-01, 2.4078e-03, - 2DIAGNOSTIC, 30, -7.894523295683e-01, 9.764524303720e-05, 1.9698e-01, 2.3320e-03, - 2DIAGNOSTIC, 31, -7.894674981414e-01, 9.371633550363e-05, 1.9919e-01, 2.2120e-03, - 2DIAGNOSTIC, 32, -7.894470150096e-01, 8.285305310737e-05, 2.0167e-01, 2.4819e-03, - 2DIAGNOSTIC, 33, -7.894368411805e-01, 6.717762377188e-05, 2.0418e-01, 2.5058e-03, - 2DIAGNOSTIC, 34, -7.894153696643e-01, 4.905736434305e-05, 2.0645e-01, 2.2759e-03, - 2DIAGNOSTIC, 35, -7.893516627949e-01, 2.912358108517e-05, 2.0866e-01, 2.2020e-03, - 2DIAGNOSTIC, 36, -7.893161706247e-01, 9.898930109588e-06, 2.1096e-01, 2.3019e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.915701244282e-01, 1.797693134862e+308, 2.6942e-01, 5.8458e-02, - 2DIAGNOSTIC, 2, -5.920979063478e-01, 1.797693134862e+308, 2.8073e-01, 1.1311e-02, - 2DIAGNOSTIC, 3, -5.929719702973e-01, 1.797693134862e+308, 2.9190e-01, 1.1172e-02, - 2DIAGNOSTIC, 4, -5.941452548980e-01, 1.797693134862e+308, 3.0308e-01, 1.1186e-02, - 2DIAGNOSTIC, 5, -5.957924373224e-01, 1.797693134862e+308, 3.1429e-01, 1.1209e-02, - 2DIAGNOSTIC, 6, -5.972383068592e-01, 1.797693134862e+308, 3.2512e-01, 1.0823e-02, - 2DIAGNOSTIC, 7, -5.988221889706e-01, 1.797693134862e+308, 3.3792e-01, 1.2804e-02, - 2DIAGNOSTIC, 8, -6.005464278049e-01, 1.797693134862e+308, 3.5754e-01, 1.9620e-02, - 2DIAGNOSTIC, 9, -6.005987703513e-01, 1.797693134862e+308, 3.7008e-01, 1.2543e-02, - 2DIAGNOSTIC, 10, -6.009321636637e-01, 1.171954409415e-03, 3.8266e-01, 1.2574e-02, - 2DIAGNOSTIC, 11, -6.013007275785e-01, 1.005767936368e-03, 3.9402e-01, 1.1364e-02, - 2DIAGNOSTIC, 12, -6.017531720566e-01, 8.152931582798e-04, 4.0542e-01, 1.1395e-02, - 2DIAGNOSTIC, 13, -6.024956968481e-01, 6.390226340449e-04, 4.1675e-01, 1.1336e-02, - 2DIAGNOSTIC, 14, -6.037079156786e-01, 5.104759685208e-04, 4.2849e-01, 1.1733e-02, - 2DIAGNOSTIC, 15, -6.043705535094e-01, 4.253157874003e-04, 4.4339e-01, 1.4901e-02, - 2DIAGNOSTIC, 16, -6.045915478305e-01, 3.607957725266e-04, 4.5483e-01, 1.1440e-02, - 2DIAGNOSTIC, 17, -6.049291416894e-01, 3.235730243983e-04, 4.6602e-01, 1.1192e-02, - 2DIAGNOSTIC, 18, -6.055105256554e-01, 3.213476884557e-04, 4.8402e-01, 1.8004e-02, - 2DIAGNOSTIC, 19, -6.056811963633e-01, 2.945082435226e-04, 4.9503e-01, 1.1011e-02, - 2DIAGNOSTIC, 20, -6.057834937927e-01, 2.534466064591e-04, 5.0738e-01, 1.2343e-02, - 2DIAGNOSTIC, 21, -6.057964486079e-01, 2.018576455338e-04, 5.1761e-01, 1.0232e-02, - 2DIAGNOSTIC, 22, -6.058024014927e-01, 1.461380839496e-04, 5.2934e-01, 1.1736e-02, - 2DIAGNOSTIC, 23, -6.058071863813e-01, 9.645364047439e-05, 5.3959e-01, 1.0243e-02, - 2DIAGNOSTIC, 24, -6.058265840709e-01, 6.597663011626e-05, 5.5342e-01, 1.3831e-02, - 2DIAGNOSTIC, 25, -6.058301394377e-01, 4.456513575558e-05, 5.6441e-01, 1.0991e-02, - 2DIAGNOSTIC, 26, -6.058258524397e-01, 2.467526377416e-05, 5.7550e-01, 1.1095e-02, - 2DIAGNOSTIC, 27, -6.058305907178e-01, 9.829236135218e-06, 5.8658e-01, 1.1076e-02, - 2DIAGNOSTIC, 28, -6.058298679501e-01, 4.965578905954e-06, 5.9782e-01, 1.1239e-02, - 2DIAGNOSTIC, 29, -6.058312335562e-01, 2.830090808703e-06, 6.0912e-01, 1.1303e-02, - 2DIAGNOSTIC, 30, -6.058264823703e-01, 2.204637329785e-06, 6.1924e-01, 1.0119e-02, - 2DIAGNOSTIC, 31, -6.058277981041e-01, 1.735211147900e-06, 6.3019e-01, 1.0949e-02, - 2DIAGNOSTIC, 32, -6.058303542679e-01, 1.354473446992e-06, 6.4322e-01, 1.3027e-02, - 2DIAGNOSTIC, 33, -6.058293981363e-01, 1.007624487667e-06, 6.5448e-01, 1.1262e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.046040460495e-01, 1.797693134862e+308, 8.3490e-01, 1.8042e-01, - Elapsed time (stage 1): 8.5559e-01 - - -Total elapsed time: 2.3031e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:48:05 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 54 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 107 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 91.02% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 91.02% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[11255 4971 2413 1196 7814 7869 701 2376 620 207 225 876 - 641 0 195 357 173 0 0 0 0 0 177 0 - 0 0 0 220 169 0 0 0 0 0 0 0 - 0 0 0 0 220 0 0 0 0 0 0 0 - 0 0 0 0 0 0] -[157674 46764 55626 32535 54104 18288 20589 20248 25471 21395 - 18067 20280 11353 15237 10602 8650 11572 10859 3630 10174 - 4072 10844 2136 3488 1433 4350 3133 6477 1109 1595 - 1898 1368 284 1390 693 519 1035 188 1001 1311 - 1025 765 871 677 329 794 579 996 0 843 - 244 510 0 378] -[ 0 2750 228 7694 0 7836 11156 0 0 0 855 0 - 0 0 170 411 0 0 225 0 0 0 0 0 - 556 499 177 189 0 0 0 9725 0 278 13525 0 - 166 0 0 0 11194 0 0 0 0 337 0 0 - 0 0 405 0 0 0] -[ 2236 280 52958 393 6873 105662 352 2344 2903 0 - 902 0 1501 1942 998 2965 687 1584 0 958 - 746 947 0 15410 9508 13216 816 2486 2332 1069 - 1695 127243 1700 5999 173 1525 14942 508 605 0 - 4727 8053 1247 10984 1233 12958 2353 1338 4571 2645 - 11617 4997 4264 1147] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:58:19 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 04:58:22 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:05 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:05 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:05 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:15 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:18 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC009 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:02:52 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983049392700195,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:03:17 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:05:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:05:10 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:06:28 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:06:29 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x561aed33ed20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.7585, 116.949, -137.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x561aed1b5730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f40255fd010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x561aed342020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.068, 45.3436, -128.223] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x561aed3480c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4021f3e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x561aed358840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.7585, 116.949, -137.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x561aed344890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f401d26a010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x561aed35c3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.068, 45.3436, -128.223] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x561aed34b130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4019bab010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.322003314077e-01, 1.797693134862e+308, 2.3007e-01, 2.3007e-01, - 2DIAGNOSTIC, 2, -4.349814593447e-01, 1.797693134862e+308, 2.3130e-01, 1.2259e-03, - 2DIAGNOSTIC, 3, -4.362036959301e-01, 1.797693134862e+308, 2.3252e-01, 1.2269e-03, - 2DIAGNOSTIC, 4, -4.389940863418e-01, 1.797693134862e+308, 2.3374e-01, 1.2169e-03, - 2DIAGNOSTIC, 5, -4.437852938041e-01, 1.797693134862e+308, 2.3497e-01, 1.2269e-03, - 2DIAGNOSTIC, 6, -4.603945021179e-01, 1.797693134862e+308, 2.3662e-01, 1.6520e-03, - 2DIAGNOSTIC, 7, -4.668389665759e-01, 1.797693134862e+308, 2.3782e-01, 1.1969e-03, - 2DIAGNOSTIC, 8, -4.686948982923e-01, 1.797693134862e+308, 2.3905e-01, 1.2369e-03, - 2DIAGNOSTIC, 9, -4.714847120451e-01, 1.797693134862e+308, 2.4041e-01, 1.3571e-03, - 2DIAGNOSTIC, 10, -4.958601260390e-01, 8.380879524426e-03, 2.4291e-01, 2.5001e-03, - 2DIAGNOSTIC, 11, -4.993522076518e-01, 8.558838300224e-03, 2.4470e-01, 1.7922e-03, - 2DIAGNOSTIC, 12, -5.028755784550e-01, 8.267957762976e-03, 2.4663e-01, 1.9321e-03, - 2DIAGNOSTIC, 13, -5.053602688768e-01, 7.479491925270e-03, 2.4830e-01, 1.6630e-03, - 2DIAGNOSTIC, 14, -5.078935586989e-01, 6.367716050207e-03, 2.5040e-01, 2.1029e-03, - 2DIAGNOSTIC, 15, -5.095935165945e-01, 5.065646838007e-03, 2.5206e-01, 1.6620e-03, - 2DIAGNOSTIC, 16, -5.127244957640e-01, 4.204889408761e-03, 2.5444e-01, 2.3739e-03, - 2DIAGNOSTIC, 17, -5.106029650426e-01, 3.229978430014e-03, 2.5606e-01, 1.6282e-03, - 2DIAGNOSTIC, 18, -5.124063329885e-01, 2.205020803372e-03, 2.5791e-01, 1.8420e-03, - 2DIAGNOSTIC, 19, -5.130453885655e-01, 1.177237265442e-03, 2.5980e-01, 1.8890e-03, - 2DIAGNOSTIC, 20, -5.130814797022e-01, 8.671201676236e-04, 2.6173e-01, 1.9350e-03, - 2DIAGNOSTIC, 21, -5.131211764999e-01, 6.056235823493e-04, 2.6321e-01, 1.4760e-03, - 2DIAGNOSTIC, 22, -5.131542172683e-01, 4.082222146384e-04, 2.6499e-01, 1.7788e-03, - 2DIAGNOSTIC, 23, -5.133244221603e-01, 2.578506808272e-04, 2.6670e-01, 1.7109e-03, - 2DIAGNOSTIC, 24, -5.154199431754e-01, 2.075807360284e-04, 2.6815e-01, 1.4548e-03, - 2DIAGNOSTIC, 25, -5.131409582976e-01, 1.253739707145e-04, 2.7007e-01, 1.9162e-03, - 2DIAGNOSTIC, 26, -5.128335706292e-01, 1.054019749837e-04, 2.7155e-01, 1.4861e-03, - 2DIAGNOSTIC, 27, -5.128530872432e-01, 3.140441123259e-05, 2.7302e-01, 1.4648e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.739436284615e-01, 1.797693134862e+308, 5.0861e-01, 2.3559e-01, - 2DIAGNOSTIC, 2, -3.722067242646e-01, 1.797693134862e+308, 5.1065e-01, 2.0330e-03, - 2DIAGNOSTIC, 3, -3.724701938722e-01, 1.797693134862e+308, 5.1304e-01, 2.3911e-03, - 2DIAGNOSTIC, 4, -3.727318656100e-01, 1.797693134862e+308, 5.1516e-01, 2.1241e-03, - 2DIAGNOSTIC, 5, -3.728217863434e-01, 1.797693134862e+308, 5.1728e-01, 2.1169e-03, - 2DIAGNOSTIC, 6, -3.732361014547e-01, 1.797693134862e+308, 5.1944e-01, 2.1620e-03, - 2DIAGNOSTIC, 7, -3.737858868299e-01, 1.797693134862e+308, 5.2159e-01, 2.1491e-03, - 2DIAGNOSTIC, 8, -3.750444401187e-01, 1.797693134862e+308, 5.2407e-01, 2.4819e-03, - 2DIAGNOSTIC, 9, -3.759114172637e-01, 1.797693134862e+308, 5.2622e-01, 2.1441e-03, - 2DIAGNOSTIC, 10, -3.822779323123e-01, 1.061131672213e-03, 5.2902e-01, 2.8059e-03, - 2DIAGNOSTIC, 11, -3.889808835639e-01, 1.976426290343e-03, 5.3178e-01, 2.7580e-03, - 2DIAGNOSTIC, 12, -3.951140912865e-01, 2.822774108618e-03, 5.3458e-01, 2.8040e-03, - 2DIAGNOSTIC, 13, -3.963264807089e-01, 3.362951331502e-03, 5.3746e-01, 2.8720e-03, - 2DIAGNOSTIC, 14, -4.078643505398e-01, 4.145877929159e-03, 5.4030e-01, 2.8410e-03, - 2DIAGNOSTIC, 15, -4.175676935683e-01, 4.900966784978e-03, 5.4403e-01, 3.7370e-03, - 2DIAGNOSTIC, 16, -4.184303812436e-01, 5.152982931241e-03, 5.4676e-01, 2.7299e-03, - 2DIAGNOSTIC, 17, -4.178233691289e-01, 4.908857196575e-03, 5.4940e-01, 2.6410e-03, - 2DIAGNOSTIC, 18, -4.186821899123e-01, 4.338460257193e-03, 5.5169e-01, 2.2838e-03, - 2DIAGNOSTIC, 19, -4.191081138265e-01, 3.471665840050e-03, 5.5431e-01, 2.6169e-03, - 2DIAGNOSTIC, 20, -4.208663303731e-01, 2.658424571486e-03, 5.5671e-01, 2.4068e-03, - 2DIAGNOSTIC, 21, -4.304966102231e-01, 2.238497152428e-03, 5.5949e-01, 2.7750e-03, - 2DIAGNOSTIC, 22, -4.369481922761e-01, 2.062030450057e-03, 5.6303e-01, 3.5400e-03, - 2DIAGNOSTIC, 23, -4.410393343146e-01, 1.866526464586e-03, 5.6537e-01, 2.3470e-03, - 2DIAGNOSTIC, 24, -4.430126042770e-01, 1.909532635342e-03, 5.6774e-01, 2.3670e-03, - 2DIAGNOSTIC, 25, -4.475034609053e-01, 2.171533050582e-03, 5.7021e-01, 2.4738e-03, - 2DIAGNOSTIC, 26, -4.556007697737e-01, 2.443463009598e-03, 5.7267e-01, 2.4569e-03, - 2DIAGNOSTIC, 27, -4.607990558131e-01, 2.574023371445e-03, 5.7761e-01, 4.9419e-03, - 2DIAGNOSTIC, 28, -4.613566472399e-01, 2.489851636947e-03, 5.8042e-01, 2.8031e-03, - 2DIAGNOSTIC, 29, -4.627699900455e-01, 2.228760262289e-03, 5.8353e-01, 3.1109e-03, - 2DIAGNOSTIC, 30, -4.635232642337e-01, 1.830743211890e-03, 5.8619e-01, 2.6610e-03, - 2DIAGNOSTIC, 31, -4.654191233434e-01, 1.538470654716e-03, 5.8892e-01, 2.7270e-03, - 2DIAGNOSTIC, 32, -4.684225747549e-01, 1.320166164139e-03, 5.9244e-01, 3.5200e-03, - 2DIAGNOSTIC, 33, -4.725220388438e-01, 1.161970859367e-03, 5.9555e-01, 3.1159e-03, - 2DIAGNOSTIC, 34, -4.757311993627e-01, 1.007295036443e-03, 5.9863e-01, 3.0782e-03, - 2DIAGNOSTIC, 35, -4.785023228263e-01, 9.040971400172e-04, 6.0140e-01, 2.7730e-03, - 2DIAGNOSTIC, 36, -4.792703964502e-01, 8.851042590646e-04, 6.0509e-01, 3.6910e-03, - 2DIAGNOSTIC, 37, -4.799582983401e-01, 8.902466917360e-04, 6.0785e-01, 2.7599e-03, - 2DIAGNOSTIC, 38, -4.806774697983e-01, 8.320918689686e-04, 6.1046e-01, 2.6078e-03, - 2DIAGNOSTIC, 39, -4.810011034761e-01, 7.275180247174e-04, 6.1378e-01, 3.3221e-03, - 2DIAGNOSTIC, 40, -4.813676338550e-01, 5.782970488911e-04, 6.1644e-01, 2.6550e-03, - 2DIAGNOSTIC, 41, -4.822794205812e-01, 4.275601184678e-04, 6.1884e-01, 2.3980e-03, - 2DIAGNOSTIC, 42, -4.856620367694e-01, 3.435300417770e-04, 6.2248e-01, 3.6461e-03, - 2DIAGNOSTIC, 43, -4.863994398400e-01, 3.031190541372e-04, 6.2485e-01, 2.3692e-03, - 2DIAGNOSTIC, 44, -4.869360596345e-01, 2.913203501966e-04, 6.2721e-01, 2.3611e-03, - 2DIAGNOSTIC, 45, -4.875322770021e-01, 3.018931014845e-04, 6.2954e-01, 2.3220e-03, - 2DIAGNOSTIC, 46, -4.913711457970e-01, 3.480437506481e-04, 6.3184e-01, 2.3010e-03, - 2DIAGNOSTIC, 47, -4.927320473523e-01, 3.848519902131e-04, 6.3407e-01, 2.2290e-03, - 2DIAGNOSTIC, 48, -4.952261757269e-01, 4.266447971583e-04, 6.3695e-01, 2.8851e-03, - 2DIAGNOSTIC, 49, -4.976644153337e-01, 4.628943969954e-04, 6.4135e-01, 4.3950e-03, - 2DIAGNOSTIC, 50, -4.984047249636e-01, 4.673694127762e-04, 6.4451e-01, 3.1610e-03, - 2DIAGNOSTIC, 51, -5.016124914775e-01, 4.776504547676e-04, 6.4890e-01, 4.3941e-03, - 2DIAGNOSTIC, 52, -5.021350525027e-01, 4.888827911982e-04, 6.5186e-01, 2.9631e-03, - 2DIAGNOSTIC, 53, -5.022797573483e-01, 4.639666339949e-04, 6.5422e-01, 2.3549e-03, - 2DIAGNOSTIC, 54, -5.031040548240e-01, 4.124304240430e-04, 6.5688e-01, 2.6581e-03, - 2DIAGNOSTIC, 55, -5.043080575429e-01, 3.432405894731e-04, 6.5949e-01, 2.6121e-03, - 2DIAGNOSTIC, 56, -5.087190921252e-01, 3.370365025469e-04, 6.6327e-01, 3.7789e-03, - 2DIAGNOSTIC, 57, -5.097463547825e-01, 3.237206834171e-04, 6.6627e-01, 3.0029e-03, - 2DIAGNOSTIC, 58, -5.101678860532e-01, 3.120341877697e-04, 6.6883e-01, 2.5582e-03, - 2DIAGNOSTIC, 59, -5.120243437757e-01, 3.176879004094e-04, 6.7162e-01, 2.7919e-03, - 2DIAGNOSTIC, 60, -5.134776639365e-01, 3.140803430879e-04, 6.7405e-01, 2.4319e-03, - 2DIAGNOSTIC, 61, -5.152830903709e-01, 3.311446264174e-04, 6.7645e-01, 2.4009e-03, - 2DIAGNOSTIC, 62, -5.193032843882e-01, 3.615730850341e-04, 6.8042e-01, 3.9668e-03, - 2DIAGNOSTIC, 63, -5.199251759262e-01, 3.635831963041e-04, 6.8267e-01, 2.2490e-03, - 2DIAGNOSTIC, 64, -5.203143612887e-01, 3.430273659627e-04, 6.8519e-01, 2.5220e-03, - 2DIAGNOSTIC, 65, -5.210078340715e-01, 3.076441759413e-04, 6.8767e-01, 2.4819e-03, - 2DIAGNOSTIC, 66, -5.208073365651e-01, 2.831176226690e-04, 6.9011e-01, 2.4409e-03, - 2DIAGNOSTIC, 67, -5.210354628283e-01, 2.436559073139e-04, 6.9236e-01, 2.2500e-03, - 2DIAGNOSTIC, 68, -5.215316132794e-01, 1.901898115109e-04, 6.9463e-01, 2.2628e-03, - 2DIAGNOSTIC, 69, -5.232400679523e-01, 1.522952238878e-04, 6.9719e-01, 2.5680e-03, - 2DIAGNOSTIC, 70, -5.244162581602e-01, 1.237705641971e-04, 6.9983e-01, 2.6371e-03, - 2DIAGNOSTIC, 71, -5.272727712194e-01, 1.237377344745e-04, 7.0238e-01, 2.5470e-03, - 2DIAGNOSTIC, 72, -5.286534106360e-01, 1.574738292952e-04, 7.0527e-01, 2.8880e-03, - 2DIAGNOSTIC, 73, -5.290430668200e-01, 1.834630239816e-04, 7.0749e-01, 2.2271e-03, - 2DIAGNOSTIC, 74, -5.301002821565e-01, 2.029596367914e-04, 7.1035e-01, 2.8601e-03, - 2DIAGNOSTIC, 75, -5.305252394412e-01, 2.112656533601e-04, 7.1294e-01, 2.5909e-03, - 2DIAGNOSTIC, 76, -5.305552329594e-01, 1.974584480205e-04, 7.1553e-01, 2.5892e-03, - 2DIAGNOSTIC, 77, -5.307052101824e-01, 1.681501114822e-04, 7.1780e-01, 2.2709e-03, - 2DIAGNOSTIC, 78, -5.311166795260e-01, 1.305827298371e-04, 7.2013e-01, 2.3260e-03, - 2DIAGNOSTIC, 79, -5.326890415520e-01, 1.066481595021e-04, 7.2379e-01, 3.6581e-03, - 2DIAGNOSTIC, 80, -5.332935429860e-01, 8.579810878860e-05, 7.2641e-01, 2.6240e-03, - 2DIAGNOSTIC, 81, -5.339113530710e-01, 8.310772577752e-05, 7.2904e-01, 2.6259e-03, - 2DIAGNOSTIC, 82, -5.341355091501e-01, 8.445803858200e-05, 7.3128e-01, 2.2440e-03, - 2DIAGNOSTIC, 83, -5.347319159857e-01, 8.461609192486e-05, 7.3350e-01, 2.2199e-03, - 2DIAGNOSTIC, 84, -5.366557969086e-01, 9.765101829940e-05, 7.3638e-01, 2.8789e-03, - 2DIAGNOSTIC, 85, -5.376153757573e-01, 1.103362222182e-04, 7.3891e-01, 2.5258e-03, - 2DIAGNOSTIC, 86, -5.379419631581e-01, 1.146870014602e-04, 7.4141e-01, 2.5020e-03, - 2DIAGNOSTIC, 87, -5.376551626290e-01, 1.072435013554e-04, 7.4372e-01, 2.3060e-03, - 2DIAGNOSTIC, 88, -5.396101722323e-01, 1.056053921049e-04, 7.4601e-01, 2.2988e-03, - 2DIAGNOSTIC, 89, -5.422208630894e-01, 1.212038895569e-04, 7.4898e-01, 2.9669e-03, - 2DIAGNOSTIC, 90, -5.441883407642e-01, 1.411791723977e-04, 7.5128e-01, 2.2960e-03, - 2DIAGNOSTIC, 91, -5.451371419912e-01, 1.574882513693e-04, 7.5352e-01, 2.2440e-03, - 2DIAGNOSTIC, 92, -5.480509588165e-01, 1.788140463641e-04, 7.5580e-01, 2.2829e-03, - 2DIAGNOSTIC, 93, -5.624135946425e-01, 2.768179738988e-04, 7.5841e-01, 2.6109e-03, - 2DIAGNOSTIC, 94, -5.664815515880e-01, 3.805163057594e-04, 7.6224e-01, 3.8261e-03, - 2DIAGNOSTIC, 95, -5.671178261158e-01, 4.553066171099e-04, 7.6448e-01, 2.2371e-03, - 2DIAGNOSTIC, 96, -5.687679504253e-01, 4.982916335636e-04, 7.6700e-01, 2.5260e-03, - 2DIAGNOSTIC, 97, -5.703418298845e-01, 4.994651376411e-04, 7.6921e-01, 2.2080e-03, - 2DIAGNOSTIC, 98, -5.718382094645e-01, 4.711182560299e-04, 7.7174e-01, 2.5251e-03, - 2DIAGNOSTIC, 99, -5.733363770351e-01, 4.215353988665e-04, 7.7447e-01, 2.7330e-03, - 2DIAGNOSTIC, 100, -5.763730052205e-01, 3.628730877254e-04, 7.7756e-01, 3.0849e-03, - 2DIAGNOSTIC, 101, -6.026084025865e-01, 4.277815286387e-04, 7.8222e-01, 4.6620e-03, - 2DIAGNOSTIC, 102, -6.089814666256e-01, 4.965644255625e-04, 7.8609e-01, 3.8700e-03, - 2DIAGNOSTIC, 103, -6.237150328124e-01, 6.798355083149e-04, 7.8905e-01, 2.9631e-03, - 2DIAGNOSTIC, 104, -6.309248653663e-01, 8.559860917094e-04, 7.9241e-01, 3.3550e-03, - 2DIAGNOSTIC, 105, -6.523242099169e-01, 1.065349952500e-03, 7.9579e-01, 3.3882e-03, - 2DIAGNOSTIC, 106, -6.643126647711e-01, 1.236173505559e-03, 7.9914e-01, 3.3491e-03, - 2DIAGNOSTIC, 107, -6.713185807153e-01, 1.328031566142e-03, 8.0264e-01, 3.5009e-03, - 2DIAGNOSTIC, 108, -6.752580633809e-01, 1.320193758572e-03, 8.0532e-01, 2.6791e-03, - 2DIAGNOSTIC, 109, -6.804903064271e-01, 1.221349784406e-03, 8.0835e-01, 3.0251e-03, - 2DIAGNOSTIC, 110, -6.815138594981e-01, 1.023495450703e-03, 8.1113e-01, 2.7790e-03, - 2DIAGNOSTIC, 111, -6.935119005146e-01, 9.256718399812e-04, 8.1411e-01, 2.9831e-03, - 2DIAGNOSTIC, 112, -7.005227143766e-01, 8.060130210064e-04, 8.1698e-01, 2.8729e-03, - 2DIAGNOSTIC, 113, -7.068516053187e-01, 7.164769911451e-04, 8.2072e-01, 3.7420e-03, - 2DIAGNOSTIC, 114, -7.138527956329e-01, 6.278101581607e-04, 8.2367e-01, 2.9471e-03, - 2DIAGNOSTIC, 115, -7.149608031614e-01, 5.883576263784e-04, 8.2627e-01, 2.5940e-03, - 2DIAGNOSTIC, 116, -7.152248188010e-01, 5.510047016819e-04, 8.2879e-01, 2.5229e-03, - 2DIAGNOSTIC, 117, -7.152530763515e-01, 4.941263248315e-04, 8.3133e-01, 2.5449e-03, - 2DIAGNOSTIC, 118, -7.152228954362e-01, 4.087571658896e-04, 8.3382e-01, 2.4910e-03, - 2DIAGNOSTIC, 119, -7.151450636986e-01, 3.101227113026e-04, 8.3682e-01, 2.9988e-03, - 2DIAGNOSTIC, 120, -7.152822865707e-01, 1.881934872505e-04, 8.3982e-01, 2.9931e-03, - 2DIAGNOSTIC, 121, -7.154955943292e-01, 1.059063951579e-04, 8.4287e-01, 3.0541e-03, - 2DIAGNOSTIC, 122, -7.156592914586e-01, 4.691230153642e-05, 8.4536e-01, 2.4900e-03, - 2DIAGNOSTIC, 123, -7.156443400325e-01, 1.180123918166e-05, 8.4761e-01, 2.2509e-03, - 2DIAGNOSTIC, 124, -7.158580266111e-01, 7.768710349331e-06, 8.5011e-01, 2.4960e-03, - 2DIAGNOSTIC, 125, -7.159246009389e-01, 8.118440273005e-06, 8.5232e-01, 2.2101e-03, - 2DIAGNOSTIC, 126, -7.162632661905e-01, 1.025483925488e-05, 8.5480e-01, 2.4810e-03, - 2DIAGNOSTIC, 127, -7.164734511337e-01, 1.236587846847e-05, 8.5694e-01, 2.1400e-03, - 2DIAGNOSTIC, 128, -7.172115803648e-01, 1.625166161003e-05, 8.5905e-01, 2.1141e-03, - 2DIAGNOSTIC, 129, -7.184083531675e-01, 2.308209662565e-05, 8.6118e-01, 2.1241e-03, - 2DIAGNOSTIC, 130, -7.198192138777e-01, 3.378826702296e-05, 8.6344e-01, 2.2600e-03, - 2DIAGNOSTIC, 131, -7.229195475642e-01, 5.437660570096e-05, 8.6771e-01, 4.2720e-03, - 2DIAGNOSTIC, 132, -7.235005991591e-01, 7.207597220149e-05, 8.7068e-01, 2.9719e-03, - 2DIAGNOSTIC, 133, -7.235108402009e-01, 8.255518484454e-05, 8.7333e-01, 2.6491e-03, - 2DIAGNOSTIC, 134, -7.234415491726e-01, 8.556518083173e-05, 8.7564e-01, 2.3069e-03, - 2DIAGNOSTIC, 135, -7.234072832027e-01, 8.029388896204e-05, 8.7788e-01, 2.2399e-03, - 2DIAGNOSTIC, 136, -7.235918379086e-01, 6.925352812491e-05, 8.8011e-01, 2.2380e-03, - 2DIAGNOSTIC, 137, -7.242949945681e-01, 5.518982883654e-05, 8.8233e-01, 2.2199e-03, - 2DIAGNOSTIC, 138, -7.261362320594e-01, 4.587900966950e-05, 8.8452e-01, 2.1811e-03, - 2DIAGNOSTIC, 139, -7.319018815578e-01, 5.827040705704e-05, 8.8761e-01, 3.0951e-03, - 2DIAGNOSTIC, 140, -7.327521709089e-01, 7.240425996906e-05, 8.9034e-01, 2.7320e-03, - 2DIAGNOSTIC, 141, -7.328950907699e-01, 9.138784587962e-05, 8.9306e-01, 2.7139e-03, - 2DIAGNOSTIC, 142, -7.327996343917e-01, 1.032434284788e-04, 8.9549e-01, 2.4381e-03, - 2DIAGNOSTIC, 143, -7.327237040245e-01, 1.045486662592e-04, 8.9821e-01, 2.7151e-03, - 2DIAGNOSTIC, 144, -7.326320214400e-01, 9.483234611219e-05, 9.0058e-01, 2.3739e-03, - 2DIAGNOSTIC, 145, -7.325722124017e-01, 7.578610732622e-05, 9.0301e-01, 2.4252e-03, - 2DIAGNOSTIC, 146, -7.328981701051e-01, 5.187284136310e-05, 9.0541e-01, 2.4009e-03, - 2DIAGNOSTIC, 147, -7.331512405183e-01, 2.678199026204e-05, 9.0816e-01, 2.7452e-03, - 2DIAGNOSTIC, 148, -7.335148405664e-01, 6.629191782829e-06, 9.1060e-01, 2.4450e-03, - 2DIAGNOSTIC, 149, -7.336477070186e-01, 6.273579107711e-06, 9.1312e-01, 2.5210e-03, - 2DIAGNOSTIC, 150, -7.356144963638e-01, 1.487143727605e-05, 9.1597e-01, 2.8498e-03, - 2DIAGNOSTIC, 151, -7.366772526712e-01, 2.576637813558e-05, 9.2017e-01, 4.2021e-03, - 2DIAGNOSTIC, 152, -7.370392577213e-01, 3.485039815273e-05, 9.2292e-01, 2.7449e-03, - 2DIAGNOSTIC, 153, -7.370634625227e-01, 4.036788746175e-05, 9.2538e-01, 2.4641e-03, - 2DIAGNOSTIC, 154, -7.372091803028e-01, 4.214420784558e-05, 9.2813e-01, 2.7471e-03, - 2DIAGNOSTIC, 155, -7.375911141905e-01, 4.075653816776e-05, 9.3089e-01, 2.7640e-03, - 2DIAGNOSTIC, 156, -7.376442036193e-01, 3.656702982454e-05, 9.3359e-01, 2.6941e-03, - 2DIAGNOSTIC, 157, -7.375075976044e-01, 2.935585402729e-05, 9.3630e-01, 2.7130e-03, - 2DIAGNOSTIC, 158, -7.373534076939e-01, 2.024746314599e-05, 9.3899e-01, 2.6932e-03, - 2DIAGNOSTIC, 159, -7.373226440957e-01, 9.549172729311e-06, 9.4129e-01, 2.2941e-03, - 2DIAGNOSTIC, 160, -7.375423952618e-01, 4.812842694019e-06, 9.4378e-01, 2.4929e-03, - 2DIAGNOSTIC, 161, -7.379212057640e-01, 4.101782050061e-06, 9.4631e-01, 2.5320e-03, - 2DIAGNOSTIC, 162, -7.379963169898e-01, 4.371049891634e-06, 9.4848e-01, 2.1691e-03, - 2DIAGNOSTIC, 163, -7.384123192429e-01, 5.605512219922e-06, 9.5099e-01, 2.5129e-03, - 2DIAGNOSTIC, 164, -7.386720160325e-01, 7.471305146396e-06, 9.5350e-01, 2.5101e-03, - 2DIAGNOSTIC, 165, -7.387589813108e-01, 9.973778541526e-06, 9.5568e-01, 2.1760e-03, - 2DIAGNOSTIC, 166, -7.391277815586e-01, 1.274978991305e-05, 9.5795e-01, 2.2650e-03, - 2DIAGNOSTIC, 167, -7.405846008926e-01, 1.815108994854e-05, 9.6086e-01, 2.9140e-03, - 2DIAGNOSTIC, 168, -7.410537495659e-01, 2.255163907594e-05, 9.6397e-01, 3.1152e-03, - 2DIAGNOSTIC, 169, -7.413794203457e-01, 2.558479784128e-05, 9.6619e-01, 2.2120e-03, - 2DIAGNOSTIC, 170, -7.413113735018e-01, 2.658627225511e-05, 9.6866e-01, 2.4760e-03, - 2DIAGNOSTIC, 171, -7.413381296752e-01, 2.619797382746e-05, 9.7117e-01, 2.5060e-03, - 2DIAGNOSTIC, 172, -7.418747417802e-01, 2.494032068330e-05, 9.7428e-01, 3.1149e-03, - 2DIAGNOSTIC, 173, -7.426485584936e-01, 2.456365286535e-05, 9.7675e-01, 2.4691e-03, - 2DIAGNOSTIC, 174, -7.447155340761e-01, 2.834036126951e-05, 9.7950e-01, 2.7459e-03, - 2DIAGNOSTIC, 175, -7.462417599609e-01, 3.373323638878e-05, 9.8215e-01, 2.6538e-03, - 2DIAGNOSTIC, 176, -7.482243401565e-01, 4.216120384996e-05, 9.8547e-01, 3.3131e-03, - 2DIAGNOSTIC, 177, -7.482883717812e-01, 5.047905312040e-05, 9.8810e-01, 2.6340e-03, - 2DIAGNOSTIC, 178, -7.483966323766e-01, 5.540407484619e-05, 9.9070e-01, 2.5971e-03, - 2DIAGNOSTIC, 179, -7.482847532087e-01, 5.546988744857e-05, 9.9330e-01, 2.6050e-03, - 2DIAGNOSTIC, 180, -7.479947946422e-01, 4.916541963503e-05, 9.9556e-01, 2.2569e-03, - 2DIAGNOSTIC, 181, -7.478863662662e-01, 3.797031649084e-05, 9.9814e-01, 2.5790e-03, - 2DIAGNOSTIC, 182, -7.481146727656e-01, 2.532602695807e-05, 1.0007e+00, 2.5699e-03, - 2DIAGNOSTIC, 183, -7.479997872587e-01, 1.208481044495e-05, 1.0032e+00, 2.5330e-03, - 2DIAGNOSTIC, 184, -7.479014207400e-01, 2.965146179006e-06, 1.0058e+00, 2.5148e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.077625443974e-01, 1.797693134862e+308, 1.2882e+00, 2.8247e-01, - 2DIAGNOSTIC, 2, -6.095983701853e-01, 1.797693134862e+308, 1.3024e+00, 1.4148e-02, - 2DIAGNOSTIC, 3, -6.116996090192e-01, 1.797693134862e+308, 1.3157e+00, 1.3326e-02, - 2DIAGNOSTIC, 4, -6.127888074569e-01, 1.797693134862e+308, 1.3287e+00, 1.2984e-02, - 2DIAGNOSTIC, 5, -6.130820652319e-01, 1.797693134862e+308, 1.3446e+00, 1.5939e-02, - 2DIAGNOSTIC, 6, -6.133739340453e-01, 1.797693134862e+308, 1.3585e+00, 1.3840e-02, - 2DIAGNOSTIC, 7, -6.137628740698e-01, 1.797693134862e+308, 1.3824e+00, 2.3967e-02, - 2DIAGNOSTIC, 8, -6.137809568279e-01, 1.797693134862e+308, 1.4000e+00, 1.7531e-02, - 2DIAGNOSTIC, 9, -6.138466369345e-01, 1.797693134862e+308, 1.4146e+00, 1.4671e-02, - 2DIAGNOSTIC, 10, -6.141016870777e-01, 5.607933798867e-04, 1.4308e+00, 1.6213e-02, - 2DIAGNOSTIC, 11, -6.142741003279e-01, 3.364264182748e-04, 1.4444e+00, 1.3532e-02, - 2DIAGNOSTIC, 12, -6.143775414541e-01, 1.926468215592e-04, 1.4622e+00, 1.7823e-02, - 2DIAGNOSTIC, 13, -6.143420267872e-01, 1.268124812619e-04, 1.4757e+00, 1.3536e-02, - 2DIAGNOSTIC, 14, -6.143466977040e-01, 9.548582080064e-05, 1.4893e+00, 1.3606e-02, - 2DIAGNOSTIC, 15, -6.143962540425e-01, 7.020148619287e-05, 1.5051e+00, 1.5767e-02, - 2DIAGNOSTIC, 16, -6.145057744523e-01, 5.300528973631e-05, 1.5207e+00, 1.5566e-02, - 2DIAGNOSTIC, 17, -6.145487311599e-01, 4.490781701304e-05, 1.5357e+00, 1.5023e-02, - 2DIAGNOSTIC, 18, -6.145704016163e-01, 3.489153108804e-05, 1.5489e+00, 1.3215e-02, - 2DIAGNOSTIC, 19, -6.146461295901e-01, 2.626249300195e-05, 1.5617e+00, 1.2782e-02, - 2DIAGNOSTIC, 20, -6.146928512828e-01, 2.304817217161e-05, 1.5746e+00, 1.2930e-02, - 2DIAGNOSTIC, 21, -6.148236734345e-01, 2.470809462045e-05, 1.5872e+00, 1.2560e-02, - 2DIAGNOSTIC, 22, -6.151115667198e-01, 3.226363428772e-05, 1.5999e+00, 1.2673e-02, - 2DIAGNOSTIC, 23, -6.153590293192e-01, 4.045520398469e-05, 1.6254e+00, 2.5565e-02, - 2DIAGNOSTIC, 24, -6.155169464041e-01, 4.739052786838e-05, 1.6419e+00, 1.6507e-02, - 2DIAGNOSTIC, 25, -6.155421466994e-01, 5.081659812250e-05, 1.6548e+00, 1.2865e-02, - 2DIAGNOSTIC, 26, -6.155221816329e-01, 5.095009216358e-05, 1.6684e+00, 1.3611e-02, - 2DIAGNOSTIC, 27, -6.155411677989e-01, 4.742210306724e-05, 1.6817e+00, 1.3304e-02, - 2DIAGNOSTIC, 28, -6.155901872210e-01, 4.085993474250e-05, 1.6950e+00, 1.3254e-02, - 2DIAGNOSTIC, 29, -6.157086569691e-01, 3.409561095142e-05, 1.7099e+00, 1.4925e-02, - 2DIAGNOSTIC, 30, -6.158279258066e-01, 2.722927210724e-05, 1.7256e+00, 1.5726e-02, - 2DIAGNOSTIC, 31, -6.159580793672e-01, 2.217064453306e-05, 1.7406e+00, 1.5019e-02, - 2DIAGNOSTIC, 32, -6.161119918317e-01, 2.173365010313e-05, 1.7599e+00, 1.9278e-02, - 2DIAGNOSTIC, 33, -6.161825652099e-01, 2.372022693245e-05, 1.7766e+00, 1.6721e-02, - 2DIAGNOSTIC, 34, -6.163119077421e-01, 2.731995896125e-05, 1.7913e+00, 1.4642e-02, - 2DIAGNOSTIC, 35, -6.163756817620e-01, 2.936032470004e-05, 1.8036e+00, 1.2371e-02, - 2DIAGNOSTIC, 36, -6.164581462118e-01, 2.938003855723e-05, 1.8183e+00, 1.4628e-02, - 2DIAGNOSTIC, 37, -6.167972810474e-01, 3.115217593900e-05, 1.8343e+00, 1.6043e-02, - 2DIAGNOSTIC, 38, -6.169028241359e-01, 3.170818833787e-05, 1.8486e+00, 1.4291e-02, - 2DIAGNOSTIC, 39, -6.168796174635e-01, 3.042796431875e-05, 1.8634e+00, 1.4781e-02, - 2DIAGNOSTIC, 40, -6.169339921984e-01, 2.845165527892e-05, 1.8775e+00, 1.4107e-02, - 2DIAGNOSTIC, 41, -6.169466090326e-01, 2.549274690195e-05, 1.8898e+00, 1.2288e-02, - 2DIAGNOSTIC, 42, -6.170965303438e-01, 2.359420489526e-05, 1.9081e+00, 1.8284e-02, - 2DIAGNOSTIC, 43, -6.171370144600e-01, 2.071269024887e-05, 1.9206e+00, 1.2516e-02, - 2DIAGNOSTIC, 44, -6.171667806214e-01, 1.778119013835e-05, 1.9349e+00, 1.4301e-02, - 2DIAGNOSTIC, 45, -6.172381816792e-01, 1.478528656838e-05, 1.9481e+00, 1.3223e-02, - 2DIAGNOSTIC, 46, -6.173753430922e-01, 1.267068656970e-05, 1.9639e+00, 1.5760e-02, - 2DIAGNOSTIC, 47, -6.176282175388e-01, 1.524404715489e-05, 1.9776e+00, 1.3778e-02, - 2DIAGNOSTIC, 48, -6.175845358893e-01, 1.686952476770e-05, 1.9897e+00, 1.2016e-02, - 2DIAGNOSTIC, 49, -6.176666875742e-01, 1.749418227697e-05, 2.0052e+00, 1.5496e-02, - 2DIAGNOSTIC, 50, -6.176728688169e-01, 1.705290650536e-05, 2.0173e+00, 1.2154e-02, - 2DIAGNOSTIC, 51, -6.176491577094e-01, 1.489335603853e-05, 2.0311e+00, 1.3811e-02, - 2DIAGNOSTIC, 52, -6.176728359130e-01, 1.297133999681e-05, 2.0429e+00, 1.1795e-02, - 2DIAGNOSTIC, 53, -6.176654778642e-01, 1.023244173177e-05, 2.0566e+00, 1.3659e-02, - 2DIAGNOSTIC, 54, -6.177138349064e-01, 7.361202025706e-06, 2.0707e+00, 1.4072e-02, - 2DIAGNOSTIC, 55, -6.176880637694e-01, 4.302522207369e-06, 2.0864e+00, 1.5797e-02, - 2DIAGNOSTIC, 56, -6.176766194320e-01, 1.991719366226e-06, 2.1007e+00, 1.4295e-02, - 2DIAGNOSTIC, 57, -6.176622511367e-01, 1.580935433954e-06, 2.1138e+00, 1.3063e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.172339043987e-01, 1.797693134862e+308, 2.5458e+00, 4.3201e-01, - 2DIAGNOSTIC, 2, -5.174211136882e-01, 1.797693134862e+308, 2.6333e+00, 8.7440e-02, - 2DIAGNOSTIC, 3, -5.175673272416e-01, 1.797693134862e+308, 2.7250e+00, 9.1781e-02, - 2DIAGNOSTIC, 4, -5.178971303707e-01, 1.797693134862e+308, 2.8297e+00, 1.0462e-01, - 2DIAGNOSTIC, 5, -5.185836338725e-01, 1.797693134862e+308, 3.0041e+00, 1.7447e-01, - 2DIAGNOSTIC, 6, -5.186332853086e-01, 1.797693134862e+308, 3.1070e+00, 1.0288e-01, - 2DIAGNOSTIC, 7, -5.186510056385e-01, 1.797693134862e+308, 3.1978e+00, 9.0800e-02, - 2DIAGNOSTIC, 8, -5.186823471674e-01, 1.797693134862e+308, 3.2863e+00, 8.8443e-02, - 2DIAGNOSTIC, 9, -5.186996501218e-01, 1.797693134862e+308, 3.3851e+00, 9.8841e-02, - 2DIAGNOSTIC, 10, -5.187045802939e-01, 2.077872041156e-04, 3.4733e+00, 8.8159e-02, - 2DIAGNOSTIC, 11, -5.187044677198e-01, 1.469422573394e-04, 3.5861e+00, 1.1287e-01, - 2DIAGNOSTIC, 12, -5.187059855264e-01, 9.244542218892e-05, 3.6730e+00, 8.6848e-02, - 2DIAGNOSTIC, 13, -5.187029809569e-01, 4.423041233613e-05, 3.7761e+00, 1.0311e-01, - 2DIAGNOSTIC, 14, -5.187064773629e-01, 1.141749101165e-05, 3.8635e+00, 8.7371e-02, - 2DIAGNOSTIC, 15, -5.187111760549e-01, 7.377195438779e-06, 3.9653e+00, 1.0185e-01, - 2DIAGNOSTIC, 16, -5.187195299874e-01, 5.347533367395e-06, 4.0979e+00, 1.3260e-01, - 2DIAGNOSTIC, 17, -5.187235116172e-01, 3.923348346570e-06, 4.1987e+00, 1.0082e-01, - 2DIAGNOSTIC, 18, -5.187228531320e-01, 3.392048483347e-06, 4.2995e+00, 1.0077e-01, - 2DIAGNOSTIC, 19, -5.187223613695e-01, 3.251841035799e-06, 4.3866e+00, 8.7104e-02, - 2DIAGNOSTIC, 20, -5.187192973913e-01, 3.028100719664e-06, 4.4890e+00, 1.0237e-01, - 2DIAGNOSTIC, 21, -5.187146159439e-01, 2.563428804690e-06, 4.5952e+00, 1.0629e-01, - 2DIAGNOSTIC, 22, -5.187217669641e-01, 2.264089325632e-06, 4.7003e+00, 1.0510e-01, - 2DIAGNOSTIC, 23, -5.187219117421e-01, 1.840898925992e-06, 4.7914e+00, 9.1094e-02, - 2DIAGNOSTIC, 24, -5.187246095808e-01, 1.552939836023e-06, 4.8809e+00, 8.9500e-02, - 2DIAGNOSTIC, 25, -5.187312769834e-01, 1.513935834981e-06, 4.9804e+00, 9.9508e-02, - 2DIAGNOSTIC, 26, -5.187379487231e-01, 1.767331647966e-06, 5.0724e+00, 9.1907e-02, - 2DIAGNOSTIC, 27, -5.187323876181e-01, 1.914506754144e-06, 5.1920e+00, 1.1964e-01, - 2DIAGNOSTIC, 28, -5.187318235662e-01, 1.961922183664e-06, 5.3229e+00, 1.3085e-01, - 2DIAGNOSTIC, 29, -5.187271985429e-01, 1.833958251332e-06, 5.4247e+00, 1.0187e-01, - 2DIAGNOSTIC, 30, -5.187241995400e-01, 1.536116947531e-06, 5.5245e+00, 9.9736e-02, - 2DIAGNOSTIC, 31, -5.187227990822e-01, 1.100457036100e-06, 5.6118e+00, 8.7306e-02, - Elapsed time (stage 0): 5.7558e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.594099402926e-01, 1.797693134862e+308, 2.1486e-01, 2.1486e-01, - 2DIAGNOSTIC, 2, -8.619637117800e-01, 1.797693134862e+308, 2.1601e-01, 1.1442e-03, - 2DIAGNOSTIC, 3, -8.635876295724e-01, 1.797693134862e+308, 2.1721e-01, 1.2012e-03, - 2DIAGNOSTIC, 4, -8.711725023448e-01, 1.797693134862e+308, 2.1838e-01, 1.1780e-03, - 2DIAGNOSTIC, 5, -8.777451804061e-01, 1.797693134862e+308, 2.1959e-01, 1.2050e-03, - 2DIAGNOSTIC, 6, -8.932328115823e-01, 1.797693134862e+308, 2.2120e-01, 1.6069e-03, - 2DIAGNOSTIC, 7, -9.016112081510e-01, 1.797693134862e+308, 2.2237e-01, 1.1711e-03, - 2DIAGNOSTIC, 8, -9.075804658569e-01, 1.797693134862e+308, 2.2364e-01, 1.2710e-03, - 2DIAGNOSTIC, 9, -9.187016383643e-01, 1.797693134862e+308, 2.2490e-01, 1.2569e-03, - 2DIAGNOSTIC, 10, -9.351906404681e-01, 5.533926509175e-03, 2.2642e-01, 1.5280e-03, - 2DIAGNOSTIC, 11, -9.415932505442e-01, 5.520277577637e-03, 2.2791e-01, 1.4899e-03, - 2DIAGNOSTIC, 12, -9.437907792322e-01, 5.144146041366e-03, 2.2981e-01, 1.8928e-03, - 2DIAGNOSTIC, 13, -9.442794221678e-01, 4.422653473970e-03, 2.3122e-01, 1.4100e-03, - 2DIAGNOSTIC, 14, -9.467368947876e-01, 3.632846568495e-03, 2.3315e-01, 1.9350e-03, - 2DIAGNOSTIC, 15, -9.487845978920e-01, 2.789113494037e-03, 2.3504e-01, 1.8940e-03, - 2DIAGNOSTIC, 16, -9.490027474731e-01, 2.103291383777e-03, 2.3688e-01, 1.8339e-03, - 2DIAGNOSTIC, 17, -9.484626747827e-01, 1.456235662159e-03, 2.3956e-01, 2.6770e-03, - 2DIAGNOSTIC, 18, -9.479606270855e-01, 8.442798922357e-04, 2.4184e-01, 2.2881e-03, - 2DIAGNOSTIC, 19, -9.485063173558e-01, 4.049882230479e-04, 2.4452e-01, 2.6741e-03, - 2DIAGNOSTIC, 20, -9.481696823828e-01, 2.202838659738e-04, 2.4666e-01, 2.1431e-03, - 2DIAGNOSTIC, 21, -9.472337772218e-01, 1.136007627993e-04, 2.4801e-01, 1.3449e-03, - 2DIAGNOSTIC, 22, -9.482251338185e-01, 5.247387248344e-05, 2.4954e-01, 1.5290e-03, - 2DIAGNOSTIC, 23, -9.489595842069e-01, 7.388479257450e-06, 2.5115e-01, 1.6189e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.121137705501e-01, 1.797693134862e+308, 4.7478e-01, 2.2363e-01, - 2DIAGNOSTIC, 2, -8.117598519612e-01, 1.797693134862e+308, 4.7716e-01, 2.3820e-03, - 2DIAGNOSTIC, 3, -8.128517985356e-01, 1.797693134862e+308, 4.7956e-01, 2.3942e-03, - 2DIAGNOSTIC, 4, -8.150484185864e-01, 1.797693134862e+308, 4.8205e-01, 2.4910e-03, - 2DIAGNOSTIC, 5, -8.155689495526e-01, 1.797693134862e+308, 4.8438e-01, 2.3291e-03, - 2DIAGNOSTIC, 6, -8.167740591316e-01, 1.797693134862e+308, 4.8668e-01, 2.3060e-03, - 2DIAGNOSTIC, 7, -8.187030047823e-01, 1.797693134862e+308, 4.8932e-01, 2.6331e-03, - 2DIAGNOSTIC, 8, -8.214000009650e-01, 1.797693134862e+308, 4.9248e-01, 3.1679e-03, - 2DIAGNOSTIC, 9, -8.213027618300e-01, 1.797693134862e+308, 4.9519e-01, 2.7061e-03, - 2DIAGNOSTIC, 10, -8.218298803958e-01, 9.065558740048e-04, 4.9751e-01, 2.3220e-03, - 2DIAGNOSTIC, 11, -8.220164032071e-01, 8.101119081430e-04, 4.9977e-01, 2.2562e-03, - 2DIAGNOSTIC, 12, -8.226846430324e-01, 6.652671859226e-04, 5.0235e-01, 2.5871e-03, - 2DIAGNOSTIC, 13, -8.230515146677e-01, 5.193905358088e-04, 5.0467e-01, 2.3110e-03, - 2DIAGNOSTIC, 14, -8.236033396586e-01, 4.162167772656e-04, 5.0712e-01, 2.4590e-03, - 2DIAGNOSTIC, 15, -8.244252291152e-01, 3.206791306480e-04, 5.0978e-01, 2.6600e-03, - 2DIAGNOSTIC, 16, -8.248832880737e-01, 2.430836861344e-04, 5.1284e-01, 3.0508e-03, - 2DIAGNOSTIC, 17, -8.247481380484e-01, 1.875027815079e-04, 5.1586e-01, 3.0200e-03, - 2DIAGNOSTIC, 18, -8.244942185650e-01, 1.685119240339e-04, 5.1832e-01, 2.4679e-03, - 2DIAGNOSTIC, 19, -8.239425630126e-01, 1.242052808324e-04, 5.2112e-01, 2.7919e-03, - 2DIAGNOSTIC, 20, -8.239269837347e-01, 8.185558826473e-05, 5.2352e-01, 2.4040e-03, - 2DIAGNOSTIC, 21, -8.240203040722e-01, 4.026217570721e-05, 5.2617e-01, 2.6462e-03, - 2DIAGNOSTIC, 22, -8.242555261406e-01, 1.305958745168e-05, 5.2884e-01, 2.6729e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.876308960592e-01, 1.797693134862e+308, 7.6894e-01, 2.4010e-01, - 2DIAGNOSTIC, 2, -6.886689996262e-01, 1.797693134862e+308, 7.8281e-01, 1.3874e-02, - 2DIAGNOSTIC, 3, -6.899227400557e-01, 1.797693134862e+308, 7.9656e-01, 1.3753e-02, - 2DIAGNOSTIC, 4, -6.912723672495e-01, 1.797693134862e+308, 8.1016e-01, 1.3599e-02, - 2DIAGNOSTIC, 5, -6.928334918229e-01, 1.797693134862e+308, 8.2319e-01, 1.3028e-02, - 2DIAGNOSTIC, 6, -6.940730650633e-01, 1.797693134862e+308, 8.3649e-01, 1.3298e-02, - 2DIAGNOSTIC, 7, -6.953006311704e-01, 1.797693134862e+308, 8.5372e-01, 1.7234e-02, - 2DIAGNOSTIC, 8, -6.956829631618e-01, 1.797693134862e+308, 8.7212e-01, 1.8397e-02, - 2DIAGNOSTIC, 9, -6.959017534664e-01, 1.797693134862e+308, 8.8450e-01, 1.2383e-02, - 2DIAGNOSTIC, 10, -6.967061615364e-01, 8.861509327600e-04, 8.9752e-01, 1.3017e-02, - 2DIAGNOSTIC, 11, -6.969395528002e-01, 7.103522650619e-04, 9.2000e-01, 2.2483e-02, - 2DIAGNOSTIC, 12, -6.969808173203e-01, 5.369621677117e-04, 9.3283e-01, 1.2826e-02, - 2DIAGNOSTIC, 13, -6.971764557479e-01, 3.879133143569e-04, 9.4757e-01, 1.4747e-02, - 2DIAGNOSTIC, 14, -6.971647208841e-01, 2.638277524274e-04, 9.6226e-01, 1.4683e-02, - 2DIAGNOSTIC, 15, -6.972011217180e-01, 1.753657192122e-04, 9.8082e-01, 1.8564e-02, - 2DIAGNOSTIC, 16, -6.971607869689e-01, 1.119788367013e-04, 9.9727e-01, 1.6445e-02, - 2DIAGNOSTIC, 17, -6.971631534308e-01, 7.565182462289e-05, 1.0130e+00, 1.5743e-02, - 2DIAGNOSTIC, 18, -6.971495816790e-01, 4.503041915351e-05, 1.0264e+00, 1.3423e-02, - 2DIAGNOSTIC, 19, -6.972061528436e-01, 1.912170768144e-05, 1.0418e+00, 1.5368e-02, - 2DIAGNOSTIC, 20, -6.972575413043e-01, 1.158513025525e-05, 1.0550e+00, 1.3238e-02, - 2DIAGNOSTIC, 21, -6.974729160862e-01, 1.258556628530e-05, 1.0715e+00, 1.6421e-02, - 2DIAGNOSTIC, 22, -6.975573250541e-01, 1.461825631259e-05, 1.0866e+00, 1.5122e-02, - 2DIAGNOSTIC, 23, -6.976566963754e-01, 2.050482139155e-05, 1.0999e+00, 1.3330e-02, - 2DIAGNOSTIC, 24, -6.977763995284e-01, 2.593039699209e-05, 1.1129e+00, 1.2975e-02, - 2DIAGNOSTIC, 25, -6.979488505208e-01, 3.199505858806e-05, 1.1261e+00, 1.3167e-02, - 2DIAGNOSTIC, 26, -6.984971942688e-01, 4.260071622321e-05, 1.1398e+00, 1.3704e-02, - 2DIAGNOSTIC, 27, -6.994469567959e-01, 6.273610318387e-05, 1.1533e+00, 1.3548e-02, - 2DIAGNOSTIC, 28, -7.002758726201e-01, 8.725170424236e-05, 1.1769e+00, 2.3586e-02, - 2DIAGNOSTIC, 29, -7.015019991041e-01, 1.199327693756e-04, 1.1925e+00, 1.5607e-02, - 2DIAGNOSTIC, 30, -7.016427828730e-01, 1.415469010935e-04, 1.2071e+00, 1.4613e-02, - 2DIAGNOSTIC, 31, -7.020944880270e-01, 1.573907689385e-04, 1.2229e+00, 1.5829e-02, - 2DIAGNOSTIC, 32, -7.029576273036e-01, 1.693565151465e-04, 1.2366e+00, 1.3654e-02, - 2DIAGNOSTIC, 33, -7.056520238461e-01, 1.987388735706e-04, 1.2558e+00, 1.9172e-02, - 2DIAGNOSTIC, 34, -7.071107965046e-01, 2.257165411920e-04, 1.2708e+00, 1.5033e-02, - 2DIAGNOSTIC, 35, -7.077079872491e-01, 2.387981770757e-04, 1.2862e+00, 1.5409e-02, - 2DIAGNOSTIC, 36, -7.078359092692e-01, 2.365841143457e-04, 1.3033e+00, 1.7094e-02, - 2DIAGNOSTIC, 37, -7.077951901334e-01, 2.220080461714e-04, 1.3181e+00, 1.4839e-02, - 2DIAGNOSTIC, 38, -7.080659391094e-01, 1.982040399977e-04, 1.3327e+00, 1.4546e-02, - 2DIAGNOSTIC, 39, -7.081657645589e-01, 1.703766499302e-04, 1.3462e+00, 1.3521e-02, - 2DIAGNOSTIC, 40, -7.082419376066e-01, 1.302552970048e-04, 1.3597e+00, 1.3512e-02, - 2DIAGNOSTIC, 41, -7.084454640575e-01, 8.656827669657e-05, 1.3733e+00, 1.3555e-02, - 2DIAGNOSTIC, 42, -7.088389334862e-01, 4.843598610486e-05, 1.3969e+00, 2.3664e-02, - 2DIAGNOSTIC, 43, -7.090191516676e-01, 3.428341969263e-05, 1.4147e+00, 1.7761e-02, - 2DIAGNOSTIC, 44, -7.090466720143e-01, 3.114656612295e-05, 1.4287e+00, 1.3949e-02, - 2DIAGNOSTIC, 45, -7.090497713184e-01, 3.070997663674e-05, 1.4428e+00, 1.4110e-02, - 2DIAGNOSTIC, 46, -7.090574646505e-01, 2.865565595076e-05, 1.4606e+00, 1.7843e-02, - 2DIAGNOSTIC, 47, -7.090656997643e-01, 2.362040678310e-05, 1.4770e+00, 1.6423e-02, - 2DIAGNOSTIC, 48, -7.090336318944e-01, 1.859054040741e-05, 1.4907e+00, 1.3684e-02, - 2DIAGNOSTIC, 49, -7.090437555659e-01, 1.301712729062e-05, 1.5040e+00, 1.3246e-02, - 2DIAGNOSTIC, 50, -7.090588879723e-01, 7.234254320154e-06, 1.5193e+00, 1.5367e-02, - 2DIAGNOSTIC, 51, -7.090893863019e-01, 2.832300060766e-06, 1.5357e+00, 1.6336e-02, - 2DIAGNOSTIC, 52, -7.090769813029e-01, 1.318881055042e-06, 1.5495e+00, 1.3868e-02, - 2DIAGNOSTIC, 53, -7.090676548963e-01, 1.108854144526e-06, 1.5629e+00, 1.3331e-02, - 2DIAGNOSTIC, 54, -7.090619164815e-01, 1.026769395656e-06, 1.5783e+00, 1.5467e-02, - 2DIAGNOSTIC, 55, -7.091318983445e-01, 1.435636426714e-06, 1.5938e+00, 1.5475e-02, - 2DIAGNOSTIC, 56, -7.091234194751e-01, 1.719143744808e-06, 1.6075e+00, 1.3651e-02, - 2DIAGNOSTIC, 57, -7.090986655578e-01, 1.782353949393e-06, 1.6234e+00, 1.5989e-02, - 2DIAGNOSTIC, 58, -7.090860512747e-01, 1.430846733722e-06, 1.6370e+00, 1.3603e-02, - 2DIAGNOSTIC, 59, -7.091152051160e-01, 1.273262932158e-06, 1.6530e+00, 1.5977e-02, - 2DIAGNOSTIC, 60, -7.091442805971e-01, 1.324175139410e-06, 1.6688e+00, 1.5821e-02, - 2DIAGNOSTIC, 61, -7.091499154073e-01, 1.533472242417e-06, 1.6846e+00, 1.5722e-02, - 2DIAGNOSTIC, 62, -7.091361711529e-01, 1.484746087330e-06, 1.7004e+00, 1.5790e-02, - 2DIAGNOSTIC, 63, -7.091017822177e-01, 1.076689731955e-06, 1.7142e+00, 1.3850e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.939384765160e-01, 1.797693134862e+308, 2.1707e+00, 4.5654e-01, - 2DIAGNOSTIC, 2, -5.948883004875e-01, 1.797693134862e+308, 2.2702e+00, 9.9413e-02, - 2DIAGNOSTIC, 3, -5.957131693442e-01, 1.797693134862e+308, 2.3662e+00, 9.6009e-02, - 2DIAGNOSTIC, 4, -5.960982369976e-01, 1.797693134862e+308, 2.4621e+00, 9.5915e-02, - 2DIAGNOSTIC, 5, -5.964845475953e-01, 1.797693134862e+308, 2.5586e+00, 9.6473e-02, - 2DIAGNOSTIC, 6, -5.968728540867e-01, 1.797693134862e+308, 2.6695e+00, 1.1090e-01, - 2DIAGNOSTIC, 7, -5.969780328542e-01, 1.797693134862e+308, 2.9659e+00, 2.9649e-01, - 2DIAGNOSTIC, 8, -5.969793027040e-01, 1.797693134862e+308, 3.0737e+00, 1.0780e-01, - 2DIAGNOSTIC, 9, -5.969794378361e-01, 1.797693134862e+308, 3.1671e+00, 9.3343e-02, - 2DIAGNOSTIC, 10, -5.969777253047e-01, 3.001677902742e-04, 3.2578e+00, 9.0732e-02, - 2DIAGNOSTIC, 11, -5.969779992142e-01, 1.788859045908e-04, 3.3500e+00, 9.2220e-02, - 2DIAGNOSTIC, 12, -5.969765165156e-01, 9.909226550460e-05, 3.4424e+00, 9.2358e-02, - 2DIAGNOSTIC, 13, -5.969753421981e-01, 5.305938623407e-05, 3.5409e+00, 9.8511e-02, - 2DIAGNOSTIC, 14, -5.969766326090e-01, 2.200445091369e-05, 3.6390e+00, 9.8114e-02, - 2DIAGNOSTIC, 15, -5.969787714877e-01, 5.318088767636e-06, 3.7376e+00, 9.8550e-02, - 2DIAGNOSTIC, 16, -5.969842141712e-01, 2.060919311445e-06, 3.8485e+00, 1.1097e-01, - 2DIAGNOSTIC, 17, -5.969844228753e-01, 2.130330590495e-06, 3.9413e+00, 9.2799e-02, - 2DIAGNOSTIC, 18, -5.969879308796e-01, 2.297187735388e-06, 4.0459e+00, 1.0453e-01, - 2DIAGNOSTIC, 19, -5.969865097712e-01, 2.365081217974e-06, 4.1513e+00, 1.0546e-01, - 2DIAGNOSTIC, 20, -5.969866567040e-01, 2.324324133766e-06, 4.2473e+00, 9.5929e-02, - 2DIAGNOSTIC, 21, -5.969900672806e-01, 2.302420857303e-06, 4.3611e+00, 1.1381e-01, - 2DIAGNOSTIC, 22, -5.969929542099e-01, 2.237903026676e-06, 4.4737e+00, 1.1266e-01, - 2DIAGNOSTIC, 23, -5.969889269291e-01, 1.996923051834e-06, 4.5676e+00, 9.3873e-02, - 2DIAGNOSTIC, 24, -5.969899027206e-01, 1.767980655848e-06, 4.6760e+00, 1.0839e-01, - 2DIAGNOSTIC, 25, -5.969931548032e-01, 1.616002962834e-06, 4.7970e+00, 1.2100e-01, - 2DIAGNOSTIC, 26, -5.969926293799e-01, 1.529841770598e-06, 4.9337e+00, 1.3671e-01, - 2DIAGNOSTIC, 27, -5.969928431636e-01, 1.427105218159e-06, 5.0446e+00, 1.1089e-01, - 2DIAGNOSTIC, 28, -5.969911117005e-01, 1.341774328090e-06, 5.1416e+00, 9.7032e-02, - 2DIAGNOSTIC, 29, -5.969895248535e-01, 1.195426650100e-06, 5.2356e+00, 9.3981e-02, - Elapsed time (stage 1): 5.3605e+00 - - -Total elapsed time: 1.1120e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:06:43 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:06:43 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55915d1a04f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.068, 45.3436, -128.223] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55915d1a5fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f48a34be010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55915d1a1850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.068, 45.3436, -128.223] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55915d19ef30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f489fdff010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55915d1b8b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.068, 45.3436, -128.223] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55915d1a5550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f489c740010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55915d1bdd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.068, 45.3436, -128.223] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55915d1bbc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4899081010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55915d1bff70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.068, 45.3436, -128.223] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55915d1be3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f48959c2010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55915d1c0540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [107.068, 45.3436, -128.223] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55915d1c04d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4892303010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.329285691058e-01, 1.797693134862e+308, 2.1961e-01, 2.1961e-01, - 2DIAGNOSTIC, 2, -6.364093407127e-01, 1.797693134862e+308, 2.2217e-01, 2.5580e-03, - 2DIAGNOSTIC, 3, -6.417806498093e-01, 1.797693134862e+308, 2.2462e-01, 2.4550e-03, - 2DIAGNOSTIC, 4, -6.505072487292e-01, 1.797693134862e+308, 2.2692e-01, 2.3000e-03, - 2DIAGNOSTIC, 5, -6.662001921070e-01, 1.797693134862e+308, 2.2907e-01, 2.1460e-03, - 2DIAGNOSTIC, 6, -6.779773603461e-01, 1.797693134862e+308, 2.3137e-01, 2.3000e-03, - 2DIAGNOSTIC, 7, -6.784941000823e-01, 1.797693134862e+308, 2.3338e-01, 2.0139e-03, - 2DIAGNOSTIC, 8, -6.787074131825e-01, 1.797693134862e+308, 2.3527e-01, 1.8830e-03, - 2DIAGNOSTIC, 9, -6.788491660447e-01, 1.797693134862e+308, 2.3745e-01, 2.1820e-03, - 2DIAGNOSTIC, 10, -6.792718037971e-01, 5.341201437650e-03, 2.3993e-01, 2.4791e-03, - 2DIAGNOSTIC, 11, -6.799043894222e-01, 3.976300126981e-03, 2.4288e-01, 2.9480e-03, - 2DIAGNOSTIC, 12, -6.800329261359e-01, 2.621979250944e-03, 2.4534e-01, 2.4681e-03, - 2DIAGNOSTIC, 13, -6.799100488475e-01, 1.420942936064e-03, 2.4777e-01, 2.4211e-03, - 2DIAGNOSTIC, 14, -6.800085222654e-01, 5.258192492328e-04, 2.5020e-01, 2.4359e-03, - 2DIAGNOSTIC, 15, -6.799133494472e-01, 1.371732704637e-04, 2.5270e-01, 2.4979e-03, - 2DIAGNOSTIC, 16, -6.798013507446e-01, 9.482096914731e-05, 2.5492e-01, 2.2199e-03, - 2DIAGNOSTIC, 17, -6.796954678720e-01, 5.930608762343e-05, 2.5714e-01, 2.2202e-03, - 2DIAGNOSTIC, 18, -6.795846786896e-01, 2.521127027143e-05, 2.5933e-01, 2.1861e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.659924989953e-01, 1.797693134862e+308, 4.9716e-01, 2.3783e-01, - 2DIAGNOSTIC, 2, -5.669876204907e-01, 1.797693134862e+308, 5.1007e-01, 1.2908e-02, - 2DIAGNOSTIC, 3, -5.678117433092e-01, 1.797693134862e+308, 5.2484e-01, 1.4773e-02, - 2DIAGNOSTIC, 4, -5.680766860023e-01, 1.797693134862e+308, 5.3768e-01, 1.2842e-02, - 2DIAGNOSTIC, 5, -5.682353792847e-01, 1.797693134862e+308, 5.5614e-01, 1.8458e-02, - 2DIAGNOSTIC, 6, -5.682552898854e-01, 1.797693134862e+308, 5.6937e-01, 1.3231e-02, - 2DIAGNOSTIC, 7, -5.682521751858e-01, 1.797693134862e+308, 5.8867e-01, 1.9298e-02, - 2DIAGNOSTIC, 8, -5.682481760283e-01, 1.797693134862e+308, 6.0280e-01, 1.4132e-02, - 2DIAGNOSTIC, 9, -5.682484086192e-01, 1.797693134862e+308, 6.1802e-01, 1.5217e-02, - 2DIAGNOSTIC, 10, -5.682436010936e-01, 1.905815114419e-04, 6.3128e-01, 1.3263e-02, - 2DIAGNOSTIC, 11, -5.682312335773e-01, 8.237525378223e-05, 6.4642e-01, 1.5143e-02, - 2DIAGNOSTIC, 12, -5.682383461627e-01, 2.615316893388e-05, 6.5961e-01, 1.3185e-02, - 2DIAGNOSTIC, 13, -5.682451938883e-01, 8.231795926433e-06, 6.7289e-01, 1.3280e-02, - 2DIAGNOSTIC, 14, -5.683001115356e-01, 3.613572913161e-06, 6.8790e-01, 1.5016e-02, - 2DIAGNOSTIC, 15, -5.683511768060e-01, 6.422393032737e-06, 7.0157e-01, 1.3661e-02, - 2DIAGNOSTIC, 16, -5.684020568571e-01, 1.068540917379e-05, 7.1530e-01, 1.3737e-02, - 2DIAGNOSTIC, 17, -5.684850201127e-01, 1.599573365259e-05, 7.3084e-01, 1.5536e-02, - 2DIAGNOSTIC, 18, -5.685671713865e-01, 2.154002312653e-05, 7.4693e-01, 1.6096e-02, - 2DIAGNOSTIC, 19, -5.685375016606e-01, 2.385203636477e-05, 7.6028e-01, 1.3350e-02, - 2DIAGNOSTIC, 20, -5.687095475279e-01, 2.811673184469e-05, 7.8191e-01, 2.1624e-02, - 2DIAGNOSTIC, 21, -5.687311590040e-01, 2.961629440378e-05, 7.9839e-01, 1.6484e-02, - 2DIAGNOSTIC, 22, -5.687190520583e-01, 2.825071173703e-05, 8.1311e-01, 1.4713e-02, - 2DIAGNOSTIC, 23, -5.687063323058e-01, 2.440549938674e-05, 8.2598e-01, 1.2876e-02, - 2DIAGNOSTIC, 24, -5.686805735680e-01, 1.934365277995e-05, 8.3897e-01, 1.2992e-02, - 2DIAGNOSTIC, 25, -5.686827186711e-01, 1.402772698211e-05, 8.5220e-01, 1.3230e-02, - 2DIAGNOSTIC, 26, -5.686725053397e-01, 8.638035190939e-06, 8.6686e-01, 1.4658e-02, - 2DIAGNOSTIC, 27, -5.686751643653e-01, 4.538574554548e-06, 8.7991e-01, 1.3044e-02, - 2DIAGNOSTIC, 28, -5.686650095434e-01, 1.763226939074e-06, 8.9326e-01, 1.3351e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.776453092240e-01, 1.797693134862e+308, 1.2658e+00, 3.7251e-01, - 2DIAGNOSTIC, 2, -4.785033586464e-01, 1.797693134862e+308, 1.3594e+00, 9.3676e-02, - 2DIAGNOSTIC, 3, -4.790101901411e-01, 1.797693134862e+308, 1.4527e+00, 9.3211e-02, - 2DIAGNOSTIC, 4, -4.791217683413e-01, 1.797693134862e+308, 1.5483e+00, 9.5624e-02, - 2DIAGNOSTIC, 5, -4.791559535212e-01, 1.797693134862e+308, 1.6405e+00, 9.2223e-02, - 2DIAGNOSTIC, 6, -4.792094431508e-01, 1.797693134862e+308, 1.7494e+00, 1.0888e-01, - 2DIAGNOSTIC, 7, -4.792469065888e-01, 1.797693134862e+308, 1.9098e+00, 1.6039e-01, - 2DIAGNOSTIC, 8, -4.792504721929e-01, 1.797693134862e+308, 2.0191e+00, 1.0932e-01, - 2DIAGNOSTIC, 9, -4.792492422429e-01, 1.797693134862e+308, 2.1255e+00, 1.0644e-01, - 2DIAGNOSTIC, 10, -4.792494745240e-01, 1.510360485303e-04, 2.2329e+00, 1.0740e-01, - 2DIAGNOSTIC, 11, -4.792489659110e-01, 6.192936199377e-05, 2.3530e+00, 1.2012e-01, - 2DIAGNOSTIC, 12, -4.792487537521e-01, 2.413620051553e-05, 2.4607e+00, 1.0765e-01, - 2DIAGNOSTIC, 13, -4.792456007076e-01, 1.311136566211e-05, 2.5557e+00, 9.4985e-02, - 2DIAGNOSTIC, 14, -4.792456955008e-01, 7.441404773115e-06, 2.6641e+00, 1.0847e-01, - 2DIAGNOSTIC, 15, -4.792466473420e-01, 3.403471125957e-06, 2.7585e+00, 9.4317e-02, - 2DIAGNOSTIC, 16, -4.792467004293e-01, 1.696639806786e-06, 2.8546e+00, 9.6140e-02, - 2DIAGNOSTIC, 17, -4.792458866919e-01, 1.493585637134e-06, 2.9605e+00, 1.0593e-01, - 2DIAGNOSTIC, 18, -4.792472235630e-01, 1.513658863549e-06, 3.0684e+00, 1.0784e-01, - 2DIAGNOSTIC, 19, -4.792465717364e-01, 1.494644416893e-06, 3.1628e+00, 9.4393e-02, - 2DIAGNOSTIC, 20, -4.792462300993e-01, 1.489998387519e-06, 3.2684e+00, 1.0560e-01, - 2DIAGNOSTIC, 21, -4.792457051436e-01, 1.465776770584e-06, 3.3619e+00, 9.3509e-02, - 2DIAGNOSTIC, 22, -4.792414260026e-01, 1.330399254450e-06, 3.4677e+00, 1.0580e-01, - 2DIAGNOSTIC, 23, -4.792427346762e-01, 1.172728080270e-06, 3.5749e+00, 1.0718e-01, - 2DIAGNOSTIC, 24, -4.792428468263e-01, 1.049842891475e-06, 3.6945e+00, 1.1965e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.134054359310e-01, 1.797693134862e+308, 5.0341e+00, 1.3396e+00, - 2DIAGNOSTIC, 2, -4.134863847111e-01, 1.797693134862e+308, 5.5888e+00, 5.5468e-01, - 2DIAGNOSTIC, 3, -4.135232223339e-01, 1.797693134862e+308, 6.1412e+00, 5.5237e-01, - 2DIAGNOSTIC, 4, -4.135403661509e-01, 1.797693134862e+308, 6.7149e+00, 5.7373e-01, - 2DIAGNOSTIC, 5, -4.135837800781e-01, 1.797693134862e+308, 8.0684e+00, 1.3535e+00, - 2DIAGNOSTIC, 6, -4.135840270739e-01, 1.797693134862e+308, 8.6927e+00, 6.2431e-01, - 2DIAGNOSTIC, 7, -4.135837478858e-01, 1.797693134862e+308, 9.3159e+00, 6.2322e-01, - 2DIAGNOSTIC, 8, -4.135837388525e-01, 1.797693134862e+308, 9.9581e+00, 6.4214e-01, - 2DIAGNOSTIC, 9, -4.135836787821e-01, 1.797693134862e+308, 1.0503e+01, 5.4493e-01, - 2DIAGNOSTIC, 10, -4.135833832182e-01, 2.556652828931e-05, 1.1339e+01, 8.3579e-01, - 2DIAGNOSTIC, 11, -4.135834071691e-01, 1.413332620892e-05, 1.1969e+01, 6.3017e-01, - 2DIAGNOSTIC, 12, -4.135832835995e-01, 8.218554267247e-06, 1.2537e+01, 5.6829e-01, - 2DIAGNOSTIC, 13, -4.135828850103e-01, 4.639365814338e-06, 1.3114e+01, 5.7660e-01, - 2DIAGNOSTIC, 14, -4.135829262563e-01, 2.155399410356e-06, 1.3669e+01, 5.5487e-01, - 2DIAGNOSTIC, 15, -4.135829962530e-01, 2.004938659636e-06, 1.4318e+01, 6.4925e-01, - 2DIAGNOSTIC, 16, -4.135830967985e-01, 1.898841382089e-06, 1.4949e+01, 6.3104e-01, - 2DIAGNOSTIC, 17, -4.135827361766e-01, 1.787465150220e-06, 1.5575e+01, 6.2608e-01, - 2DIAGNOSTIC, 18, -4.135826380118e-01, 1.692810683546e-06, 1.6229e+01, 6.5411e-01, - 2DIAGNOSTIC, 19, -4.135825273745e-01, 1.609116650002e-06, 1.6788e+01, 5.5907e-01, - 2DIAGNOSTIC, 20, -4.135824228556e-01, 1.525609974080e-06, 1.7439e+01, 6.5078e-01, - 2DIAGNOSTIC, 21, -4.135823075345e-01, 1.453080821702e-06, 1.7987e+01, 5.4778e-01, - 2DIAGNOSTIC, 22, -4.135820675871e-01, 1.382160600367e-06, 1.8641e+01, 6.5461e-01, - 2DIAGNOSTIC, 23, -4.135819928134e-01, 1.309487447934e-06, 1.9260e+01, 6.1820e-01, - 2DIAGNOSTIC, 24, -4.135819169527e-01, 1.248587931595e-06, 1.9886e+01, 6.2614e-01, - 2DIAGNOSTIC, 25, -4.135818308429e-01, 1.199092658499e-06, 2.0455e+01, 5.6961e-01, - 2DIAGNOSTIC, 26, -4.135817813687e-01, 1.161942141684e-06, 2.1048e+01, 5.9221e-01, - 2DIAGNOSTIC, 27, -4.135817987491e-01, 1.124699043030e-06, 2.1662e+01, 6.1484e-01, - 2DIAGNOSTIC, 28, -4.135819065209e-01, 1.095396146192e-06, 2.2282e+01, 6.1958e-01, - 2DIAGNOSTIC, 29, -4.135815652156e-01, 1.061152163896e-06, 2.2831e+01, 5.4938e-01, - 2DIAGNOSTIC, 30, -4.135814291686e-01, 1.027348615644e-06, 2.3460e+01, 6.2830e-01, - Elapsed time (stage 0): 2.3825e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.796662972093e-01, 1.797693134862e+308, 1.8241e-01, 1.8241e-01, - 2DIAGNOSTIC, 2, -6.812253427975e-01, 1.797693134862e+308, 1.8514e-01, 2.7299e-03, - 2DIAGNOSTIC, 3, -6.835877844904e-01, 1.797693134862e+308, 1.8772e-01, 2.5730e-03, - 2DIAGNOSTIC, 4, -6.863921961379e-01, 1.797693134862e+308, 1.8995e-01, 2.2349e-03, - 2DIAGNOSTIC, 5, -6.883065433685e-01, 1.797693134862e+308, 1.9208e-01, 2.1269e-03, - 2DIAGNOSTIC, 6, -6.897302884147e-01, 1.797693134862e+308, 1.9416e-01, 2.0850e-03, - 2DIAGNOSTIC, 7, -6.912105100061e-01, 1.797693134862e+308, 1.9656e-01, 2.3949e-03, - 2DIAGNOSTIC, 8, -6.921732931782e-01, 1.797693134862e+308, 2.0029e-01, 3.7270e-03, - 2DIAGNOSTIC, 9, -6.922677847572e-01, 1.797693134862e+308, 2.0228e-01, 1.9951e-03, - 2DIAGNOSTIC, 10, -6.924243165492e-01, 1.280934938035e-03, 2.0481e-01, 2.5291e-03, - 2DIAGNOSTIC, 11, -6.925701549729e-01, 9.505509405163e-04, 2.0704e-01, 2.2328e-03, - 2DIAGNOSTIC, 12, -6.925548375361e-01, 6.424494426140e-04, 2.0927e-01, 2.2290e-03, - 2DIAGNOSTIC, 13, -6.926802954226e-01, 4.015860230483e-04, 2.1155e-01, 2.2819e-03, - 2DIAGNOSTIC, 14, -6.930892084968e-01, 2.531121498041e-04, 2.1374e-01, 2.1889e-03, - 2DIAGNOSTIC, 15, -6.932342453305e-01, 1.576637675436e-04, 2.1613e-01, 2.3859e-03, - 2DIAGNOSTIC, 16, -6.937149844679e-01, 1.082401420282e-04, 2.1874e-01, 2.6100e-03, - 2DIAGNOSTIC, 17, -6.941412823639e-01, 1.003536920598e-04, 2.2213e-01, 3.3929e-03, - 2DIAGNOSTIC, 18, -6.943046544480e-01, 1.098776497258e-04, 2.2438e-01, 2.2490e-03, - 2DIAGNOSTIC, 19, -6.944009219503e-01, 1.124550656589e-04, 2.2673e-01, 2.3510e-03, - 2DIAGNOSTIC, 20, -6.947400987070e-01, 1.146397668027e-04, 2.2986e-01, 3.1300e-03, - 2DIAGNOSTIC, 21, -6.949807908429e-01, 1.135109105796e-04, 2.3210e-01, 2.2399e-03, - 2DIAGNOSTIC, 22, -6.951871326439e-01, 1.054680229763e-04, 2.3433e-01, 2.2240e-03, - 2DIAGNOSTIC, 23, -6.957458968527e-01, 1.005499813084e-04, 2.3683e-01, 2.5060e-03, - 2DIAGNOSTIC, 24, -6.962154496289e-01, 1.017172203306e-04, 2.3957e-01, 2.7390e-03, - 2DIAGNOSTIC, 25, -6.965809155543e-01, 1.014875484676e-04, 2.4179e-01, 2.2161e-03, - 2DIAGNOSTIC, 26, -6.966996147470e-01, 1.011583169064e-04, 2.4426e-01, 2.4731e-03, - 2DIAGNOSTIC, 27, -6.967266081954e-01, 9.840214164340e-05, 2.4673e-01, 2.4731e-03, - 2DIAGNOSTIC, 28, -6.967358053513e-01, 8.920582705276e-05, 2.4895e-01, 2.2180e-03, - 2DIAGNOSTIC, 29, -6.967554820291e-01, 7.379193665154e-05, 2.5139e-01, 2.4438e-03, - 2DIAGNOSTIC, 30, -6.967705250958e-01, 5.733581690474e-05, 2.5422e-01, 2.8300e-03, - 2DIAGNOSTIC, 31, -6.967777456265e-01, 3.996949241146e-05, 2.5654e-01, 2.3119e-03, - 2DIAGNOSTIC, 32, -6.967910938443e-01, 2.275777511546e-05, 2.5861e-01, 2.0700e-03, - 2DIAGNOSTIC, 33, -6.967984127686e-01, 1.147471036884e-05, 2.6065e-01, 2.0461e-03, - 2DIAGNOSTIC, 34, -6.968060028731e-01, 5.509084460537e-06, 2.6358e-01, 2.9230e-03, - 2DIAGNOSTIC, 35, -6.969516974595e-01, 5.403251161648e-06, 2.6574e-01, 2.1670e-03, - 2DIAGNOSTIC, 36, -6.969591862477e-01, 6.261990533139e-06, 2.6819e-01, 2.4440e-03, - 2DIAGNOSTIC, 37, -6.969675151485e-01, 6.971816798398e-06, 2.7092e-01, 2.7320e-03, - 2DIAGNOSTIC, 38, -6.969750094852e-01, 7.261483039672e-06, 2.7333e-01, 2.4149e-03, - 2DIAGNOSTIC, 39, -6.969752367590e-01, 7.124922055936e-06, 2.7562e-01, 2.2829e-03, - 2DIAGNOSTIC, 40, -6.969761514030e-01, 6.534690843357e-06, 2.7791e-01, 2.2919e-03, - 2DIAGNOSTIC, 41, -6.969785187822e-01, 5.514151087165e-06, 2.8011e-01, 2.2061e-03, - 2DIAGNOSTIC, 42, -6.969919310097e-01, 4.370997637754e-06, 2.8307e-01, 2.9511e-03, - 2DIAGNOSTIC, 43, -6.969925017180e-01, 3.022616233073e-06, 2.8530e-01, 2.2361e-03, - 2DIAGNOSTIC, 44, -6.969938850039e-01, 1.566037849562e-06, 2.9265e-01, 7.3440e-03, - 2DIAGNOSTIC, 45, -6.969938849936e-01, 1.421650141314e-06, 3.0005e-01, 7.4019e-03, - 2DIAGNOSTIC, 46, -6.969938849936e-01, 1.280246036760e-06, 3.0321e-01, 3.1590e-03, - 2DIAGNOSTIC, 47, -6.969938849936e-01, 1.157782737099e-06, 3.0571e-01, 2.5022e-03, - 2DIAGNOSTIC, 48, -6.969938849936e-01, 1.058386674527e-06, 3.0814e-01, 2.4271e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.626622830687e-01, 1.797693134862e+308, 5.2375e-01, 2.1562e-01, - 2DIAGNOSTIC, 2, -5.640919510927e-01, 1.797693134862e+308, 5.3859e-01, 1.4837e-02, - 2DIAGNOSTIC, 3, -5.654893180566e-01, 1.797693134862e+308, 5.5340e-01, 1.4806e-02, - 2DIAGNOSTIC, 4, -5.664495914382e-01, 1.797693134862e+308, 5.6800e-01, 1.4602e-02, - 2DIAGNOSTIC, 5, -5.667649571412e-01, 1.797693134862e+308, 5.8258e-01, 1.4581e-02, - 2DIAGNOSTIC, 6, -5.669848911895e-01, 1.797693134862e+308, 5.9727e-01, 1.4695e-02, - 2DIAGNOSTIC, 7, -5.673419506971e-01, 1.797693134862e+308, 6.1277e-01, 1.5492e-02, - 2DIAGNOSTIC, 8, -5.675754876497e-01, 1.797693134862e+308, 6.2863e-01, 1.5861e-02, - 2DIAGNOSTIC, 9, -5.676455347556e-01, 1.797693134862e+308, 6.4995e-01, 2.1328e-02, - 2DIAGNOSTIC, 10, -5.677207794978e-01, 5.091231667786e-04, 6.6421e-01, 1.4251e-02, - 2DIAGNOSTIC, 11, -5.678864453055e-01, 3.231554625685e-04, 6.7877e-01, 1.4567e-02, - 2DIAGNOSTIC, 12, -5.679506363756e-01, 2.005834064377e-04, 6.9296e-01, 1.4189e-02, - 2DIAGNOSTIC, 13, -5.680151835846e-01, 1.345076390607e-04, 7.0724e-01, 1.4275e-02, - 2DIAGNOSTIC, 14, -5.681226594118e-01, 1.040982026028e-04, 7.2444e-01, 1.7203e-02, - 2DIAGNOSTIC, 15, -5.682001801525e-01, 8.153631670438e-05, 7.4109e-01, 1.6651e-02, - 2DIAGNOSTIC, 16, -5.682405735729e-01, 6.237921804687e-05, 7.5797e-01, 1.6881e-02, - 2DIAGNOSTIC, 17, -5.682720217626e-01, 5.122812945592e-05, 7.7458e-01, 1.6610e-02, - 2DIAGNOSTIC, 18, -5.683295498059e-01, 4.488358426254e-05, 7.9348e-01, 1.8903e-02, - 2DIAGNOSTIC, 19, -5.683263877312e-01, 3.692308646794e-05, 8.1053e-01, 1.7047e-02, - 2DIAGNOSTIC, 20, -5.683200873933e-01, 2.812514525222e-05, 8.2533e-01, 1.4798e-02, - 2DIAGNOSTIC, 21, -5.683170331203e-01, 2.159101785935e-05, 8.4004e-01, 1.4711e-02, - 2DIAGNOSTIC, 22, -5.683194873505e-01, 1.529022865774e-05, 8.5651e-01, 1.6474e-02, - 2DIAGNOSTIC, 23, -5.683297709408e-01, 9.812622494290e-06, 8.7119e-01, 1.4677e-02, - 2DIAGNOSTIC, 24, -5.684150001757e-01, 7.989081542710e-06, 8.8857e-01, 1.7378e-02, - 2DIAGNOSTIC, 25, -5.684364637736e-01, 7.629481626775e-06, 9.0862e-01, 2.0053e-02, - 2DIAGNOSTIC, 26, -5.684419770117e-01, 7.591635677068e-06, 9.2274e-01, 1.4118e-02, - 2DIAGNOSTIC, 27, -5.684671275804e-01, 7.999888999119e-06, 9.4192e-01, 1.9178e-02, - 2DIAGNOSTIC, 28, -5.684881844139e-01, 9.126067368595e-06, 9.6688e-01, 2.4964e-02, - 2DIAGNOSTIC, 29, -5.684899240788e-01, 9.368191975070e-06, 9.8418e-01, 1.7293e-02, - 2DIAGNOSTIC, 30, -5.684848859375e-01, 8.626290249385e-06, 9.9896e-01, 1.4789e-02, - 2DIAGNOSTIC, 31, -5.684683576802e-01, 6.927249840687e-06, 1.0140e+00, 1.5064e-02, - 2DIAGNOSTIC, 32, -5.684922046092e-01, 5.202638787422e-06, 1.0292e+00, 1.5160e-02, - 2DIAGNOSTIC, 33, -5.684998796789e-01, 3.402774764377e-06, 1.0440e+00, 1.4763e-02, - 2DIAGNOSTIC, 34, -5.685049979742e-01, 2.801468407868e-06, 1.0605e+00, 1.6565e-02, - 2DIAGNOSTIC, 35, -5.685071401607e-01, 2.408814178519e-06, 1.0749e+00, 1.4360e-02, - 2DIAGNOSTIC, 36, -5.684971598968e-01, 1.831902562283e-06, 1.0897e+00, 1.4813e-02, - 2DIAGNOSTIC, 37, -5.685028073089e-01, 1.604077035221e-06, 1.1045e+00, 1.4830e-02, - 2DIAGNOSTIC, 38, -5.685116995338e-01, 1.700559716239e-06, 1.1198e+00, 1.5275e-02, - 2DIAGNOSTIC, 39, -5.685420829208e-01, 2.120373190837e-06, 1.1374e+00, 1.7626e-02, - 2DIAGNOSTIC, 40, -5.685578327540e-01, 2.531353733664e-06, 1.1599e+00, 2.2438e-02, - 2DIAGNOSTIC, 41, -5.685467658552e-01, 2.416066149563e-06, 1.1739e+00, 1.4023e-02, - 2DIAGNOSTIC, 42, -5.685474243430e-01, 2.451136295965e-06, 1.1881e+00, 1.4263e-02, - 2DIAGNOSTIC, 43, -5.685491660743e-01, 2.427029675796e-06, 1.2044e+00, 1.6281e-02, - 2DIAGNOSTIC, 44, -5.685502320465e-01, 2.302724985526e-06, 1.2197e+00, 1.5231e-02, - 2DIAGNOSTIC, 45, -5.685398589066e-01, 1.943217945954e-06, 1.2354e+00, 1.5737e-02, - 2DIAGNOSTIC, 46, -5.685651855055e-01, 1.657900601887e-06, 1.2562e+00, 2.0779e-02, - 2DIAGNOSTIC, 47, -5.685419207359e-01, 1.100052456911e-06, 1.2708e+00, 1.4655e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.781161675029e-01, 1.797693134862e+308, 1.6613e+00, 3.9043e-01, - 2DIAGNOSTIC, 2, -4.787111719401e-01, 1.797693134862e+308, 1.7607e+00, 9.9454e-02, - 2DIAGNOSTIC, 3, -4.791023239174e-01, 1.797693134862e+308, 1.8595e+00, 9.8741e-02, - 2DIAGNOSTIC, 4, -4.792773535155e-01, 1.797693134862e+308, 1.9593e+00, 9.9842e-02, - 2DIAGNOSTIC, 5, -4.794797778523e-01, 1.797693134862e+308, 2.0852e+00, 1.2586e-01, - 2DIAGNOSTIC, 6, -4.795378815505e-01, 1.797693134862e+308, 2.1862e+00, 1.0103e-01, - 2DIAGNOSTIC, 7, -4.795652160052e-01, 1.797693134862e+308, 2.2874e+00, 1.0118e-01, - 2DIAGNOSTIC, 8, -4.795974260965e-01, 1.797693134862e+308, 2.4152e+00, 1.2785e-01, - 2DIAGNOSTIC, 9, -4.796089712990e-01, 1.797693134862e+308, 2.5157e+00, 1.0045e-01, - 2DIAGNOSTIC, 10, -4.796212545141e-01, 1.680994104755e-04, 2.6323e+00, 1.1662e-01, - 2DIAGNOSTIC, 11, -4.796338797949e-01, 9.282712191071e-05, 2.7261e+00, 9.3853e-02, - 2DIAGNOSTIC, 12, -4.796415198711e-01, 5.149494333780e-05, 2.8322e+00, 1.0609e-01, - 2DIAGNOSTIC, 13, -4.796571793271e-01, 3.056981570791e-05, 2.9409e+00, 1.0871e-01, - 2DIAGNOSTIC, 14, -4.796630119544e-01, 1.752191157582e-05, 3.0679e+00, 1.2700e-01, - 2DIAGNOSTIC, 15, -4.796624211642e-01, 1.276182635600e-05, 3.1824e+00, 1.1448e-01, - 2DIAGNOSTIC, 16, -4.796631933682e-01, 9.797215940438e-06, 3.2992e+00, 1.1676e-01, - 2DIAGNOSTIC, 17, -4.796627698026e-01, 7.374904032645e-06, 3.4133e+00, 1.1409e-01, - 2DIAGNOSTIC, 18, -4.796606332052e-01, 5.694726308084e-06, 3.5121e+00, 9.8835e-02, - 2DIAGNOSTIC, 19, -4.796611442535e-01, 4.198717807456e-06, 3.6119e+00, 9.9841e-02, - 2DIAGNOSTIC, 20, -4.796616549038e-01, 2.994777876603e-06, 3.7145e+00, 1.0258e-01, - 2DIAGNOSTIC, 21, -4.796623064262e-01, 2.149899626179e-06, 3.8161e+00, 1.0153e-01, - 2DIAGNOSTIC, 22, -4.796632235284e-01, 1.542923780101e-06, 3.9233e+00, 1.0725e-01, - 2DIAGNOSTIC, 23, -4.796689443167e-01, 1.527203529091e-06, 4.0286e+00, 1.0528e-01, - 2DIAGNOSTIC, 24, -4.796726422164e-01, 1.731611173145e-06, 4.1281e+00, 9.9547e-02, - 2DIAGNOSTIC, 25, -4.797003574338e-01, 2.522318628448e-06, 4.3245e+00, 1.9638e-01, - 2DIAGNOSTIC, 26, -4.796989253281e-01, 3.104204260487e-06, 4.4597e+00, 1.3522e-01, - 2DIAGNOSTIC, 27, -4.796977514157e-01, 3.441144610247e-06, 4.5882e+00, 1.2850e-01, - 2DIAGNOSTIC, 28, -4.796966105952e-01, 3.478771420519e-06, 4.7027e+00, 1.1450e-01, - 2DIAGNOSTIC, 29, -4.796956267500e-01, 3.279151120236e-06, 4.8200e+00, 1.1725e-01, - 2DIAGNOSTIC, 30, -4.796945535352e-01, 2.867623823490e-06, 4.9238e+00, 1.0384e-01, - 2DIAGNOSTIC, 31, -4.796936786617e-01, 2.307870779157e-06, 5.0513e+00, 1.2745e-01, - 2DIAGNOSTIC, 32, -4.796939408675e-01, 1.690163839489e-06, 5.1681e+00, 1.1679e-01, - 2DIAGNOSTIC, 33, -4.796913796805e-01, 1.104186825564e-06, 5.2693e+00, 1.0123e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.134112656416e-01, 1.797693134862e+308, 6.6102e+00, 1.3409e+00, - 2DIAGNOSTIC, 2, -4.137016493766e-01, 1.797693134862e+308, 7.2253e+00, 6.1513e-01, - 2DIAGNOSTIC, 3, -4.139057181218e-01, 1.797693134862e+308, 7.8346e+00, 6.0924e-01, - 2DIAGNOSTIC, 4, -4.140770395762e-01, 1.797693134862e+308, 8.5962e+00, 7.6167e-01, - 2DIAGNOSTIC, 5, -4.141453535115e-01, 1.797693134862e+308, 9.2095e+00, 6.1321e-01, - 2DIAGNOSTIC, 6, -4.142498400511e-01, 1.797693134862e+308, 1.0873e+01, 1.6636e+00, - 2DIAGNOSTIC, 7, -4.142499727549e-01, 1.797693134862e+308, 1.1578e+01, 7.0500e-01, - 2DIAGNOSTIC, 8, -4.142499034391e-01, 1.797693134862e+308, 1.2261e+01, 6.8267e-01, - 2DIAGNOSTIC, 9, -4.142494663733e-01, 1.797693134862e+308, 1.2953e+01, 6.9223e-01, - 2DIAGNOSTIC, 10, -4.142493783133e-01, 1.168759270789e-04, 1.3820e+01, 8.6753e-01, - 2DIAGNOSTIC, 11, -4.142491564501e-01, 6.639038614321e-05, 1.4583e+01, 7.6242e-01, - 2DIAGNOSTIC, 12, -4.142490484477e-01, 3.505657969258e-05, 1.5254e+01, 6.7087e-01, - 2DIAGNOSTIC, 13, -4.142488113629e-01, 1.625490123539e-05, 1.5886e+01, 6.3238e-01, - 2DIAGNOSTIC, 14, -4.142486101472e-01, 7.241204088487e-06, 1.6510e+01, 6.2431e-01, - 2DIAGNOSTIC, 15, -4.142487603318e-01, 1.971791506961e-06, 1.7200e+01, 6.8907e-01, - 2DIAGNOSTIC, 16, -4.142483952938e-01, 1.840321090602e-06, 1.7964e+01, 7.6445e-01, - 2DIAGNOSTIC, 17, -4.142485109191e-01, 1.748323128915e-06, 1.8681e+01, 7.1718e-01, - 2DIAGNOSTIC, 18, -4.142481922779e-01, 1.663452825373e-06, 1.9399e+01, 7.1814e-01, - 2DIAGNOSTIC, 19, -4.142480667685e-01, 1.577088103263e-06, 2.0089e+01, 6.8960e-01, - 2DIAGNOSTIC, 20, -4.142477204677e-01, 1.493605699752e-06, 2.0880e+01, 7.9124e-01, - 2DIAGNOSTIC, 21, -4.142478130970e-01, 1.423087510284e-06, 2.1634e+01, 7.5384e-01, - 2DIAGNOSTIC, 22, -4.142477104572e-01, 1.360958262524e-06, 2.2313e+01, 6.7901e-01, - 2DIAGNOSTIC, 23, -4.142474482876e-01, 1.297476934004e-06, 2.2953e+01, 6.3973e-01, - 2DIAGNOSTIC, 24, -4.142473494744e-01, 1.238914957874e-06, 2.3572e+01, 6.1892e-01, - 2DIAGNOSTIC, 25, -4.142472821118e-01, 1.195751012636e-06, 2.4193e+01, 6.2186e-01, - 2DIAGNOSTIC, 26, -4.142474125545e-01, 1.156614746901e-06, 2.4833e+01, 6.3907e-01, - 2DIAGNOSTIC, 27, -4.142474866060e-01, 1.131469938007e-06, 2.5679e+01, 8.4640e-01, - 2DIAGNOSTIC, 28, -4.142475595829e-01, 1.106632452820e-06, 2.6366e+01, 6.8691e-01, - 2DIAGNOSTIC, 29, -4.142473567605e-01, 1.078850279411e-06, 2.7068e+01, 7.0215e-01, - 2DIAGNOSTIC, 30, -4.142473350659e-01, 1.046243181008e-06, 2.7772e+01, 7.0388e-01, - 2DIAGNOSTIC, 31, -4.142471921235e-01, 1.015872234056e-06, 2.8379e+01, 6.0680e-01, - Elapsed time (stage 1): 2.8761e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.113734858323e-01, 1.797693134862e+308, 2.6502e-01, 2.6502e-01, - 1DIAGNOSTIC, 2, -9.185085432409e-01, 1.797693134862e+308, 3.6161e-01, 9.6587e-02, - 1DIAGNOSTIC, 3, -9.245001171460e-01, 1.797693134862e+308, 4.5961e-01, 9.7995e-02, - 1DIAGNOSTIC, 4, -9.295198766617e-01, 1.797693134862e+308, 5.5467e-01, 9.5068e-02, - 1DIAGNOSTIC, 5, -9.338523889196e-01, 1.797693134862e+308, 6.5025e-01, 9.5574e-02, - 1DIAGNOSTIC, 6, -9.372212714505e-01, 1.797693134862e+308, 7.5551e-01, 1.0526e-01, - 1DIAGNOSTIC, 7, -9.401601394412e-01, 1.797693134862e+308, 8.5292e-01, 9.7416e-02, - 1DIAGNOSTIC, 8, -9.426781066114e-01, 1.797693134862e+308, 9.6284e-01, 1.0992e-01, - 1DIAGNOSTIC, 9, -9.449368628432e-01, 1.797693134862e+308, 1.0708e+00, 1.0796e-01, - 1DIAGNOSTIC, 10, -9.469007070186e-01, 2.345858874536e-03, 1.1683e+00, 9.7502e-02, - 1DIAGNOSTIC, 11, -9.485325175682e-01, 1.800917212892e-03, 1.2699e+00, 1.0162e-01, - 1DIAGNOSTIC, 12, -9.500662236181e-01, 1.403813032585e-03, 1.3651e+00, 9.5190e-02, - 1DIAGNOSTIC, 13, -9.513724011083e-01, 1.110374224521e-03, 1.4633e+00, 9.8224e-02, - 1DIAGNOSTIC, 14, -9.524357830539e-01, 8.887356113779e-04, 1.5592e+00, 9.5885e-02, - 1DIAGNOSTIC, 15, -9.533612370336e-01, 7.211202907695e-04, 1.6627e+00, 1.0345e-01, - 1DIAGNOSTIC, 16, -9.541754255224e-01, 5.869623157388e-04, 1.7592e+00, 9.6530e-02, - 1DIAGNOSTIC, 17, -9.549137522053e-01, 4.795361311381e-04, 1.8638e+00, 1.0457e-01, - 1DIAGNOSTIC, 18, -9.555375072132e-01, 3.920795127206e-04, 1.9692e+00, 1.0545e-01, - 1DIAGNOSTIC, 19, -9.561633353696e-01, 3.230589806219e-04, 2.0689e+00, 9.9640e-02, - 1DIAGNOSTIC, 20, -9.567354368080e-01, 2.689751138980e-04, 2.1700e+00, 1.0117e-01, - 1DIAGNOSTIC, 21, -9.572511148399e-01, 2.255877530346e-04, 2.2730e+00, 1.0294e-01, - 1DIAGNOSTIC, 22, -9.577224106588e-01, 1.923707339657e-04, 2.3680e+00, 9.5001e-02, - 1DIAGNOSTIC, 23, -9.581594802483e-01, 1.667640133265e-04, 2.4668e+00, 9.8793e-02, - 1DIAGNOSTIC, 24, -9.585642909610e-01, 1.459841582274e-04, 2.5667e+00, 9.9954e-02, - 1DIAGNOSTIC, 25, -9.589452682600e-01, 1.288067794757e-04, 2.6618e+00, 9.5061e-02, - 1DIAGNOSTIC, 26, -9.593025686629e-01, 1.143337038367e-04, 2.7617e+00, 9.9873e-02, - 1DIAGNOSTIC, 27, -9.596351491814e-01, 1.020710864912e-04, 2.8643e+00, 1.0259e-01, - 1DIAGNOSTIC, 28, -9.599382100256e-01, 9.097999996589e-05, 2.9603e+00, 9.6013e-02, - 1DIAGNOSTIC, 29, -9.602454872627e-01, 8.171247183378e-05, 3.0682e+00, 1.0797e-01, - 1DIAGNOSTIC, 30, -9.605046530580e-01, 7.364527835190e-05, 3.1720e+00, 1.0378e-01, - 1DIAGNOSTIC, 31, -9.607672963660e-01, 6.666978532115e-05, 3.2765e+00, 1.0444e-01, - 1DIAGNOSTIC, 32, -9.610381474216e-01, 6.077895893736e-05, 3.3772e+00, 1.0072e-01, - 1DIAGNOSTIC, 33, -9.611583847494e-01, 5.455423727121e-05, 3.4786e+00, 1.0141e-01, - 1DIAGNOSTIC, 34, -9.612803696474e-01, 4.821202071630e-05, 3.5760e+00, 9.7443e-02, - 1DIAGNOSTIC, 35, -9.610083861297e-01, 3.863214038764e-05, 3.6746e+00, 9.8566e-02, - 1DIAGNOSTIC, 36, -9.609726466391e-01, 2.870828505559e-05, 3.7710e+00, 9.6368e-02, - 1DIAGNOSTIC, 37, -9.607143339062e-01, 1.722355948967e-05, 3.8665e+00, 9.5575e-02, - 1DIAGNOSTIC, 38, -9.607450464212e-01, 7.398204028803e-06, 3.9652e+00, 9.8681e-02, - 1DIAGNOSTIC, 39, -9.605378159647e-01, -1.821416440860e-06, 4.0613e+00, 9.6122e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.105760716169e-01, 1.797693134862e+308, 4.9146e+00, 8.5328e-01, - 1DIAGNOSTIC, 2, -9.151520115669e-01, 1.797693134862e+308, 5.5871e+00, 6.7248e-01, - 1DIAGNOSTIC, 3, -9.182934311892e-01, 1.797693134862e+308, 6.2265e+00, 6.3942e-01, - 1DIAGNOSTIC, 4, -9.209123985191e-01, 1.797693134862e+308, 6.8929e+00, 6.6635e-01, - 1DIAGNOSTIC, 5, -9.231008221925e-01, 1.797693134862e+308, 7.5687e+00, 6.7585e-01, - 1DIAGNOSTIC, 6, -9.248241194084e-01, 1.797693134862e+308, 8.2579e+00, 6.8913e-01, - 1DIAGNOSTIC, 7, -9.263260732639e-01, 1.797693134862e+308, 8.9457e+00, 6.8788e-01, - 1DIAGNOSTIC, 8, -9.276498762205e-01, 1.797693134862e+308, 9.6275e+00, 6.8179e-01, - 1DIAGNOSTIC, 9, -9.288263041304e-01, 1.797693134862e+308, 1.0313e+01, 6.8564e-01, - 1DIAGNOSTIC, 10, -9.298992554394e-01, 1.255493474877e-03, 1.1022e+01, 7.0920e-01, - 1DIAGNOSTIC, 11, -9.308710620265e-01, 9.483465109847e-04, 1.1696e+01, 6.7399e-01, - 1DIAGNOSTIC, 12, -9.317617459321e-01, 7.467128777937e-04, 1.2365e+01, 6.6829e-01, - 1DIAGNOSTIC, 13, -9.325695672389e-01, 6.013750353028e-04, 1.3052e+01, 6.8701e-01, - 1DIAGNOSTIC, 14, -9.333103345750e-01, 4.953457975143e-04, 1.3732e+01, 6.8047e-01, - 1DIAGNOSTIC, 15, -9.339991956371e-01, 4.167722743576e-04, 1.4427e+01, 6.9509e-01, - 1DIAGNOSTIC, 16, -9.346298516904e-01, 3.546582079936e-04, 1.5119e+01, 6.9179e-01, - 1DIAGNOSTIC, 17, -9.352226332466e-01, 3.047710176014e-04, 1.5799e+01, 6.8017e-01, - 1DIAGNOSTIC, 18, -9.357585419942e-01, 2.637715985548e-04, 1.6482e+01, 6.8292e-01, - 1DIAGNOSTIC, 19, -9.362562229917e-01, 2.295089137482e-04, 1.7169e+01, 6.8645e-01, - 1DIAGNOSTIC, 20, -9.367122177031e-01, 2.006524962883e-04, 1.7844e+01, 6.7541e-01, - 1DIAGNOSTIC, 21, -9.371273684437e-01, 1.759854117294e-04, 1.8529e+01, 6.8482e-01, - 1DIAGNOSTIC, 22, -9.375202702092e-01, 1.549238798234e-04, 1.9221e+01, 6.9195e-01, - 1DIAGNOSTIC, 23, -9.378837818020e-01, 1.367316926928e-04, 1.9899e+01, 6.7833e-01, - 1DIAGNOSTIC, 24, -9.382228020063e-01, 1.209640915703e-04, 2.0584e+01, 6.8474e-01, - 1DIAGNOSTIC, 25, -9.385306185819e-01, 1.072688559115e-04, 2.1258e+01, 6.7374e-01, - 1DIAGNOSTIC, 26, -9.388159822756e-01, 9.529634969248e-05, 2.1941e+01, 6.8320e-01, - 1DIAGNOSTIC, 27, -9.390885410891e-01, 8.502763311217e-05, 2.2621e+01, 6.7979e-01, - 1DIAGNOSTIC, 28, -9.393398642324e-01, 7.606216296244e-05, 2.3301e+01, 6.8003e-01, - 1DIAGNOSTIC, 29, -9.395751409049e-01, 6.826175677712e-05, 2.3983e+01, 6.8217e-01, - 1DIAGNOSTIC, 30, -9.397959146510e-01, 6.143654477646e-05, 2.4665e+01, 6.8240e-01, - 1DIAGNOSTIC, 31, -9.400096170060e-01, 5.545192260405e-05, 2.5350e+01, 6.8510e-01, - 1DIAGNOSTIC, 32, -9.402024062309e-01, 5.019677900746e-05, 2.6041e+01, 6.9076e-01, - 1DIAGNOSTIC, 33, -9.403706593726e-01, 4.544547269486e-05, 2.6723e+01, 6.8240e-01, - 1DIAGNOSTIC, 34, -9.405404000120e-01, 4.126284724727e-05, 2.7400e+01, 6.7691e-01, - 1DIAGNOSTIC, 35, -9.406999447006e-01, 3.750706180463e-05, 2.8071e+01, 6.7028e-01, - 1DIAGNOSTIC, 36, -9.408487248177e-01, 3.410549706856e-05, 2.8743e+01, 6.7271e-01, - 1DIAGNOSTIC, 37, -9.409893394048e-01, 3.108749006452e-05, 2.9416e+01, 6.7308e-01, - 1DIAGNOSTIC, 38, -9.411223515012e-01, 2.839520921694e-05, 3.0089e+01, 6.7248e-01, - 1DIAGNOSTIC, 39, -9.412440983555e-01, 2.596857741020e-05, 3.0765e+01, 6.7592e-01, - 1DIAGNOSTIC, 40, -9.413651266098e-01, 2.383205687265e-05, 3.1437e+01, 6.7192e-01, - 1DIAGNOSTIC, 41, -9.414743255504e-01, 2.196798582410e-05, 3.2109e+01, 6.7268e-01, - 1DIAGNOSTIC, 42, -9.415671184617e-01, 2.021512739947e-05, 3.2782e+01, 6.7311e-01, - 1DIAGNOSTIC, 43, -9.416631993833e-01, 1.853373116180e-05, 3.3462e+01, 6.7938e-01, - 1DIAGNOSTIC, 44, -9.417688646712e-01, 1.710922484519e-05, 3.4135e+01, 6.7279e-01, - 1DIAGNOSTIC, 45, -9.418571671122e-01, 1.583169602216e-05, 3.4797e+01, 6.6237e-01, - 1DIAGNOSTIC, 46, -9.419407450384e-01, 1.468060221897e-05, 3.5459e+01, 6.6237e-01, - 1DIAGNOSTIC, 47, -9.420119138169e-01, 1.359476932321e-05, 3.6141e+01, 6.8177e-01, - 1DIAGNOSTIC, 48, -9.420775317640e-01, 1.256135978799e-05, 3.6802e+01, 6.6054e-01, - 1DIAGNOSTIC, 49, -9.421416472234e-01, 1.156615034888e-05, 3.7484e+01, 6.8278e-01, - 1DIAGNOSTIC, 50, -9.422110601014e-01, 1.070677717137e-05, 3.8167e+01, 6.8227e-01, - 1DIAGNOSTIC, 51, -9.422681101223e-01, 9.894752592637e-06, 3.8838e+01, 6.7128e-01, - 1DIAGNOSTIC, 52, -9.423214670140e-01, 9.069772844077e-06, 3.9517e+01, 6.7917e-01, - 1DIAGNOSTIC, 53, -9.423682996309e-01, 8.272687180597e-06, 4.0194e+01, 6.7729e-01, - 1DIAGNOSTIC, 54, -9.424028468253e-01, 7.547888171852e-06, 4.0878e+01, 6.8362e-01, - 1DIAGNOSTIC, 55, -9.424469916396e-01, 6.903725005364e-06, 4.1545e+01, 6.6721e-01, - 1DIAGNOSTIC, 56, -9.424853905433e-01, 6.327372223610e-06, 4.2222e+01, 6.7657e-01, - 1DIAGNOSTIC, 57, -9.425245189595e-01, 5.798852220060e-06, 4.2910e+01, 6.8839e-01, - 1DIAGNOSTIC, 58, -9.425656987229e-01, 5.338170574586e-06, 4.3593e+01, 6.8232e-01, - 1DIAGNOSTIC, 59, -9.426079822575e-01, 4.972836117279e-06, 4.4262e+01, 6.6965e-01, - 1DIAGNOSTIC, 60, -9.426383570264e-01, 4.691584239821e-06, 4.4936e+01, 6.7353e-01, - 1DIAGNOSTIC, 61, -9.426659398196e-01, 4.435273047478e-06, 4.5612e+01, 6.7579e-01, - 1DIAGNOSTIC, 62, -9.426907995140e-01, 4.189256885442e-06, 4.6282e+01, 6.7013e-01, - 1DIAGNOSTIC, 63, -9.427166175037e-01, 3.943879202412e-06, 4.6965e+01, 6.8345e-01, - 1DIAGNOSTIC, 64, -9.427397386665e-01, 3.643306977941e-06, 4.7641e+01, 6.7635e-01, - 1DIAGNOSTIC, 65, -9.427609966727e-01, 3.351305022770e-06, 4.8316e+01, 6.7406e-01, - 1DIAGNOSTIC, 66, -9.427833953304e-01, 3.069756603039e-06, 4.8988e+01, 6.7231e-01, - 1DIAGNOSTIC, 67, -9.428038948234e-01, 2.813810711738e-06, 4.9668e+01, 6.7976e-01, - 1DIAGNOSTIC, 68, -9.428230419203e-01, 2.604875844178e-06, 5.0355e+01, 6.8779e-01, - 1DIAGNOSTIC, 69, -9.428412285025e-01, 2.459178373899e-06, 5.1038e+01, 6.8253e-01, - 1DIAGNOSTIC, 70, -9.428557683733e-01, 2.317367164790e-06, 5.1740e+01, 7.0194e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.898123485026e-01, 1.797693134862e+308, 5.7511e+01, 5.7713e+00, - 1DIAGNOSTIC, 2, -8.933376641321e-01, 1.797693134862e+308, 6.2931e+01, 5.4200e+00, - 1DIAGNOSTIC, 3, -8.968889921605e-01, 1.797693134862e+308, 6.8473e+01, 5.5423e+00, - 1DIAGNOSTIC, 4, -9.000987954322e-01, 1.797693134862e+308, 7.3954e+01, 5.4801e+00, - 1DIAGNOSTIC, 5, -9.028850143671e-01, 1.797693134862e+308, 7.9330e+01, 5.3767e+00, - 1DIAGNOSTIC, 6, -9.053331639944e-01, 1.797693134862e+308, 8.4643e+01, 5.3129e+00, - 1DIAGNOSTIC, 7, -9.075285387812e-01, 1.797693134862e+308, 9.0003e+01, 5.3596e+00, - 1DIAGNOSTIC, 8, -9.095428428858e-01, 1.797693134862e+308, 9.5372e+01, 5.3689e+00, - 1DIAGNOSTIC, 9, -9.112378904880e-01, 1.797693134862e+308, 1.0071e+02, 5.3431e+00, - 1DIAGNOSTIC, 10, -9.128054573678e-01, 1.620671521863e-03, 1.0607e+02, 5.3585e+00, - 1DIAGNOSTIC, 11, -9.142437459058e-01, 1.320595316374e-03, 1.1143e+02, 5.3595e+00, - 1DIAGNOSTIC, 12, -9.155883938664e-01, 1.078622186128e-03, 1.1678e+02, 5.3511e+00, - 1DIAGNOSTIC, 13, -9.167259851494e-01, 8.887947645959e-04, 1.2219e+02, 5.4046e+00, - 1DIAGNOSTIC, 14, -9.178196930678e-01, 7.411414586355e-04, 1.2754e+02, 5.3513e+00, - 1DIAGNOSTIC, 15, -9.188520058395e-01, 6.247506038991e-04, 1.3290e+02, 5.3580e+00, - 1DIAGNOSTIC, 16, -9.197919710981e-01, 5.313979159545e-04, 1.3825e+02, 5.3521e+00, - 1DIAGNOSTIC, 17, -9.206453831951e-01, 4.557592176583e-04, 1.4377e+02, 5.5196e+00, - 1DIAGNOSTIC, 18, -9.214218590279e-01, 3.946137411339e-04, 1.4914e+02, 5.3743e+00, - 1DIAGNOSTIC, 19, -9.221346415151e-01, 3.426821896748e-04, 1.5451e+02, 5.3620e+00, - 1DIAGNOSTIC, 20, -9.227925228553e-01, 2.986001501412e-04, 1.5983e+02, 5.3223e+00, - 1DIAGNOSTIC, 21, -9.234042143543e-01, 2.611375860576e-04, 1.6519e+02, 5.3649e+00, - 1DIAGNOSTIC, 22, -9.239730888477e-01, 2.296904799858e-04, 1.7053e+02, 5.3395e+00, - 1DIAGNOSTIC, 23, -9.244982884788e-01, 2.018978094146e-04, 1.7589e+02, 5.3536e+00, - 1DIAGNOSTIC, 24, -9.249652052369e-01, 1.776410749351e-04, 1.8124e+02, 5.3573e+00, - 1DIAGNOSTIC, 25, -9.253786300236e-01, 1.565665475780e-04, 1.8663e+02, 5.3905e+00, - 1DIAGNOSTIC, 26, -9.257437380182e-01, 1.379477954027e-04, 1.9200e+02, 5.3628e+00, - 1DIAGNOSTIC, 27, -9.260699914256e-01, 1.212611020190e-04, 1.9734e+02, 5.3452e+00, - 1DIAGNOSTIC, 28, -9.263606876339e-01, 1.061484843119e-04, 2.0269e+02, 5.3486e+00, - 1DIAGNOSTIC, 29, -9.266242814872e-01, 9.250177003026e-05, 2.0806e+02, 5.3655e+00, - 1DIAGNOSTIC, 30, -9.268603758041e-01, 8.027186056327e-05, 2.1340e+02, 5.3457e+00, - 1DIAGNOSTIC, 31, -9.270754933058e-01, 6.951815734815e-05, 2.1875e+02, 5.3517e+00, - 1DIAGNOSTIC, 32, -9.272758497082e-01, 6.031800595655e-05, 2.2409e+02, 5.3330e+00, - 1DIAGNOSTIC, 33, -9.274583800242e-01, 5.262258877777e-05, 2.2945e+02, 5.3681e+00, - 1DIAGNOSTIC, 34, -9.276260608919e-01, 4.619526224575e-05, 2.3478e+02, 5.3276e+00, - 1DIAGNOSTIC, 35, -9.277854089751e-01, 4.084929712299e-05, 2.4014e+02, 5.3607e+00, - 1DIAGNOSTIC, 36, -9.279357650513e-01, 3.638656429461e-05, 2.4550e+02, 5.3583e+00, - 1DIAGNOSTIC, 37, -9.280729909558e-01, 3.261986794551e-05, 2.5089e+02, 5.3919e+00, - 1DIAGNOSTIC, 38, -9.281808500675e-01, 2.923422205070e-05, 2.5627e+02, 5.3724e+00, - 1DIAGNOSTIC, 39, -9.282711256077e-01, 2.609480958958e-05, 2.6162e+02, 5.3514e+00, - 1DIAGNOSTIC, 40, -9.283373928688e-01, 2.301410647580e-05, 2.6697e+02, 5.3508e+00, - 1DIAGNOSTIC, 41, -9.283703052216e-01, 1.981051056526e-05, 2.7234e+02, 5.3734e+00, - 1DIAGNOSTIC, 42, -9.283703816689e-01, 1.640116008181e-05, 2.7768e+02, 5.3426e+00, - 1DIAGNOSTIC, 43, -9.283480198155e-01, 1.279800290572e-05, 2.8306e+02, 5.3754e+00, - 1DIAGNOSTIC, 44, -9.283073787404e-01, 9.090067958826e-06, 2.8843e+02, 5.3725e+00, - 1DIAGNOSTIC, 45, -9.282504283086e-01, 5.441238034403e-06, 2.9380e+02, 5.3700e+00, - 1DIAGNOSTIC, 46, -9.281793867685e-01, 2.024813858879e-06, 2.9913e+02, 5.3288e+00, - 1DIAGNOSTIC, 47, -9.281030267543e-01, -9.738502389812e-07, 3.0450e+02, 5.3734e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.910552401935e-01, 1.797693134862e+308, 3.4830e+02, 4.3792e+01, - 1DIAGNOSTIC, 2, -8.930295213359e-01, 1.797693134862e+308, 3.9160e+02, 4.3302e+01, - 1DIAGNOSTIC, 3, -8.950792527004e-01, 1.797693134862e+308, 4.3491e+02, 4.3317e+01, - 1DIAGNOSTIC, 4, -8.970226032629e-01, 1.797693134862e+308, 4.7827e+02, 4.3359e+01, - 1DIAGNOSTIC, 5, -8.988428551308e-01, 1.797693134862e+308, 5.2150e+02, 4.3230e+01, - 1DIAGNOSTIC, 6, -9.005221886261e-01, 1.797693134862e+308, 5.6478e+02, 4.3277e+01, - 1DIAGNOSTIC, 7, -9.020831622159e-01, 1.797693134862e+308, 6.0794e+02, 4.3160e+01, - 1DIAGNOSTIC, 8, -9.035148090167e-01, 1.797693134862e+308, 6.5123e+02, 4.3288e+01, - 1DIAGNOSTIC, 9, -9.048512007850e-01, 1.797693134862e+308, 6.9445e+02, 4.3222e+01, - 1DIAGNOSTIC, 10, -9.060210969563e-01, 1.073265000919e-03, 7.3798e+02, 4.3524e+01, - 1DIAGNOSTIC, 11, -9.070205177896e-01, 9.068680021138e-04, 7.8141e+02, 4.3432e+01, - 1DIAGNOSTIC, 12, -9.078804782701e-01, 7.609297977010e-04, 8.2473e+02, 4.3324e+01, - 1DIAGNOSTIC, 13, -9.085397644885e-01, 6.340292678737e-04, 8.6806e+02, 4.3326e+01, - 1DIAGNOSTIC, 14, -9.090326762626e-01, 5.221932883584e-04, 9.1171e+02, 4.3652e+01, - 1DIAGNOSTIC, 15, -9.096275376819e-01, 4.280818983894e-04, 9.5555e+02, 4.3844e+01, - 1DIAGNOSTIC, 16, -9.100963404483e-01, 3.484407073651e-04, 9.9936e+02, 4.3812e+01, - 1DIAGNOSTIC, 17, -9.106587111661e-01, 2.851954976008e-04, 1.0431e+03, 4.3688e+01, - 1DIAGNOSTIC, 18, -9.110630818639e-01, 2.345119352111e-04, 1.0868e+03, 4.3706e+01, - 1DIAGNOSTIC, 19, -9.115382700841e-01, 1.973240353409e-04, 1.1304e+03, 4.3641e+01, - 1DIAGNOSTIC, 20, -9.118594117118e-01, 1.688097902466e-04, 1.1741e+03, 4.3716e+01, - Elapsed time (stage 2): 1174 - - -Total elapsed time: 1227 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:48 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:48 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:54 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:57 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:57 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9781 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:27:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:01 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:01 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9834 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/anat/sub-PNC009_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:04 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9881 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:05 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 9886 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:05 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:09 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:11 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:11 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:12 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:13 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:15 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:15 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:16 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:17 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:19 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:19 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:19 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/surf/sub-PNC009_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:20 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:29 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01/sub-PNC009_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC009 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:40 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC009 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:40 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC009 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:41 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 10555 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:42 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:42 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc/sub-PNC009_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/xfm/sub-PNC009_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 10593 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:44 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:44 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC009_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 69.583 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/logs/proc_func_19-03-2024-24527.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:50 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC009 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-01/QC/sub-PNC009_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/22421_micapipe_proc-func_sub-PNC009_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC009* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 69.617 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC009_ses-01 -========================reprocessing without filter=================== -sub-PNC009_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC009 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC009 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC009 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC009 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:55 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:28:55 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-1_bold.nii.gz is 42.000008 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:31:01 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:33:05 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:33:19 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.43 (mm) at sub-brick 38 -++ Max delta displ in automask = 0.18 (mm) at sub-brick 35 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:46:01 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:46:19 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-2_bold.nii.gz is 42.000008 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:48:27 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:50:34 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-02/func/sub-PNC009_ses-02_task-rest_echo-3_bold.nii.gz is 42.000008 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:52:44 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.130 -3.252 1.153 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.4 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.161 -4.660 1.907 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 74.0 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:57:30 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:57:57 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55c0c9bf46f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.102, 50.3603, -129.038] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55c0c9a6b730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55c0c9c0b320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55c0c9bf7fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [73.7943, 111.644, -136.2] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55c0c9bfde10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55c0ca408230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55c0ca4065c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [106.102, 50.3603, -129.038] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55c0c9bfa3f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55c0caf32450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55c0ca404da0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [73.7943, 111.644, -136.2] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55c0c9c01360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55c0cb72c780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.047901199764e-01, 1.797693134862e+308, 4.5761e-02, 4.5761e-02, - 2DIAGNOSTIC, 2, -6.065174121285e-01, 1.797693134862e+308, 4.6967e-02, 1.2059e-03, - 2DIAGNOSTIC, 3, -6.112416741084e-01, 1.797693134862e+308, 4.8288e-02, 1.3208e-03, - 2DIAGNOSTIC, 4, -6.229207734583e-01, 1.797693134862e+308, 4.9873e-02, 1.5850e-03, - 2DIAGNOSTIC, 5, -6.297788842601e-01, 1.797693134862e+308, 5.1742e-02, 1.8690e-03, - 2DIAGNOSTIC, 6, -6.415915031829e-01, 1.797693134862e+308, 5.3928e-02, 2.1861e-03, - 2DIAGNOSTIC, 7, -6.472694092433e-01, 1.797693134862e+308, 5.5296e-02, 1.3680e-03, - 2DIAGNOSTIC, 8, -6.530751155232e-01, 1.797693134862e+308, 5.6967e-02, 1.6708e-03, - 2DIAGNOSTIC, 9, -6.567503401429e-01, 1.797693134862e+308, 5.8522e-02, 1.5550e-03, - 2DIAGNOSTIC, 10, -6.570918614200e-01, 6.237614646195e-03, 6.0174e-02, 1.6520e-03, - 2DIAGNOSTIC, 11, -6.580024166524e-01, 5.171688153797e-03, 6.1697e-02, 1.5240e-03, - 2DIAGNOSTIC, 12, -6.583747317484e-01, 3.904714360875e-03, 6.3401e-02, 1.7040e-03, - 2DIAGNOSTIC, 13, -6.611270930948e-01, 2.735715337352e-03, 6.4708e-02, 1.3070e-03, - 2DIAGNOSTIC, 14, -6.858707801836e-01, 2.634820075810e-03, 6.5952e-02, 1.2431e-03, - 2DIAGNOSTIC, 15, -6.967547204964e-01, 2.801256605504e-03, 6.7240e-02, 1.2879e-03, - 2DIAGNOSTIC, 16, -7.433172495635e-01, 4.267360732941e-03, 7.0132e-02, 2.8920e-03, - 2DIAGNOSTIC, 17, -7.508199720399e-01, 5.456736995453e-03, 7.1684e-02, 1.5528e-03, - 2DIAGNOSTIC, 18, -7.370605364217e-01, 5.820883943848e-03, 7.3210e-02, 1.5252e-03, - 2DIAGNOSTIC, 19, -7.378689480409e-01, 5.724423357149e-03, 7.4539e-02, 1.3292e-03, - 2DIAGNOSTIC, 20, -7.386511057431e-01, 5.122689485072e-03, 7.5870e-02, 1.3309e-03, - 2DIAGNOSTIC, 21, -7.406004207840e-01, 4.152645212332e-03, 7.7394e-02, 1.5249e-03, - 2DIAGNOSTIC, 22, -7.438382017842e-01, 2.963824394219e-03, 7.8933e-02, 1.5380e-03, - 2DIAGNOSTIC, 23, -7.661482590044e-01, 2.070971424787e-03, 8.0487e-02, 1.5540e-03, - 2DIAGNOSTIC, 24, -7.770651680394e-01, 1.681989153380e-03, 8.4080e-02, 3.5939e-03, - 2DIAGNOSTIC, 25, -7.770674471579e-01, 1.326525197601e-03, 8.5407e-02, 1.3261e-03, - 2DIAGNOSTIC, 26, -7.771029325096e-01, 1.615568509815e-03, 8.6684e-02, 1.2770e-03, - 2DIAGNOSTIC, 27, -7.771628187535e-01, 1.850679445367e-03, 8.8107e-02, 1.4238e-03, - 2DIAGNOSTIC, 28, -7.772596271047e-01, 1.688596428902e-03, 9.0056e-02, 1.9491e-03, - 2DIAGNOSTIC, 29, -7.774154091507e-01, 1.390650236337e-03, 9.2027e-02, 1.9710e-03, - 2DIAGNOSTIC, 30, -7.776621791363e-01, 1.001715834705e-03, 9.3883e-02, 1.8559e-03, - 2DIAGNOSTIC, 31, -7.780319121672e-01, 5.807320380426e-04, 9.5801e-02, 1.9178e-03, - 2DIAGNOSTIC, 32, -7.785584872932e-01, 1.747068330637e-04, 9.7657e-02, 1.8559e-03, - 2DIAGNOSTIC, 33, -7.802019621308e-01, 6.596542315745e-05, 9.9693e-02, 2.0359e-03, - 2DIAGNOSTIC, 34, -7.811761167959e-01, 9.725787990828e-05, 1.0168e-01, 1.9908e-03, - 2DIAGNOSTIC, 35, -7.814060861436e-01, 1.200659756589e-04, 1.0378e-01, 2.0940e-03, - 2DIAGNOSTIC, 36, -7.814464820151e-01, 1.313069765040e-04, 1.0510e-01, 1.3230e-03, - 2DIAGNOSTIC, 37, -7.816555934592e-01, 1.324346547672e-04, 1.0637e-01, 1.2710e-03, - 2DIAGNOSTIC, 38, -7.819049639479e-01, 1.242833897774e-04, 1.0769e-01, 1.3199e-03, - 2DIAGNOSTIC, 39, -7.819650211924e-01, 1.068178575209e-04, 1.0897e-01, 1.2770e-03, - 2DIAGNOSTIC, 40, -7.822990464674e-01, 8.611916321366e-05, 1.1034e-01, 1.3721e-03, - 2DIAGNOSTIC, 41, -7.831683981497e-01, 7.038351966175e-05, 1.1192e-01, 1.5819e-03, - 2DIAGNOSTIC, 42, -7.868034715332e-01, 8.711801540147e-05, 1.1345e-01, 1.5299e-03, - 2DIAGNOSTIC, 43, -7.823230932849e-01, 6.792554552293e-05, 1.1569e-01, 2.2371e-03, - 2DIAGNOSTIC, 44, -7.816971835580e-01, 4.795411878263e-05, 1.1713e-01, 1.4420e-03, - 2DIAGNOSTIC, 45, -7.855096497785e-01, 5.960193180459e-05, 1.1912e-01, 1.9848e-03, - 2DIAGNOSTIC, 46, -7.874565291958e-01, 8.001554368282e-05, 1.2096e-01, 1.8401e-03, - 2DIAGNOSTIC, 47, -8.006178064057e-01, 2.017558279870e-04, 1.2304e-01, 2.0850e-03, - 2DIAGNOSTIC, 48, -8.051293541474e-01, 3.354358064694e-04, 1.2471e-01, 1.6649e-03, - 2DIAGNOSTIC, 49, -8.053798447043e-01, 4.346392522151e-04, 1.2664e-01, 1.9300e-03, - 2DIAGNOSTIC, 50, -8.097490493193e-01, 5.252911150730e-04, 1.2949e-01, 2.8491e-03, - 2DIAGNOSTIC, 51, -8.097778393083e-01, 5.662461825891e-04, 1.3122e-01, 1.7390e-03, - 2DIAGNOSTIC, 52, -8.106441698725e-01, 5.845296977010e-04, 1.3344e-01, 2.2130e-03, - 2DIAGNOSTIC, 53, -8.110562610996e-01, 5.167840951809e-04, 1.3543e-01, 1.9920e-03, - 2DIAGNOSTIC, 54, -8.107551519420e-01, 3.963857857679e-04, 1.3740e-01, 1.9741e-03, - 2DIAGNOSTIC, 55, -8.114108685029e-01, 2.747808204028e-04, 1.3921e-01, 1.8060e-03, - 2DIAGNOSTIC, 56, -8.112165574304e-01, 1.411441608158e-04, 1.4068e-01, 1.4720e-03, - 2DIAGNOSTIC, 57, -8.119568000792e-01, 9.166131416726e-05, 1.4211e-01, 1.4260e-03, - 2DIAGNOSTIC, 58, -8.127261506828e-01, 7.010075101883e-05, 1.4356e-01, 1.4482e-03, - 2DIAGNOSTIC, 59, -8.143741366661e-01, 5.407386490097e-05, 1.4510e-01, 1.5430e-03, - 2DIAGNOSTIC, 60, -8.251116769860e-01, 1.288668652066e-04, 1.4727e-01, 2.1751e-03, - 2DIAGNOSTIC, 61, -8.327756257819e-01, 2.344859353597e-04, 1.4918e-01, 1.9112e-03, - 2DIAGNOSTIC, 62, -8.332997411317e-01, 3.218305477193e-04, 1.5070e-01, 1.5180e-03, - 2DIAGNOSTIC, 63, -8.338385014260e-01, 3.823847592411e-04, 1.5219e-01, 1.4839e-03, - 2DIAGNOSTIC, 64, -8.344686181989e-01, 4.062845662961e-04, 1.5363e-01, 1.4460e-03, - 2DIAGNOSTIC, 65, -8.350984217344e-01, 3.966802464117e-04, 1.5581e-01, 2.1799e-03, - 2DIAGNOSTIC, 66, -8.357175794326e-01, 3.508079164297e-04, 1.5726e-01, 1.4429e-03, - 2DIAGNOSTIC, 67, -8.363792066364e-01, 2.813324677474e-04, 1.5868e-01, 1.4250e-03, - 2DIAGNOSTIC, 68, -8.377381056384e-01, 1.998544592079e-04, 1.6082e-01, 2.1360e-03, - 2DIAGNOSTIC, 69, -8.387235670657e-01, 1.147370433565e-04, 1.6226e-01, 1.4470e-03, - 2DIAGNOSTIC, 70, -8.390146610025e-01, 7.891528708233e-05, 1.6372e-01, 1.4541e-03, - 2DIAGNOSTIC, 71, -8.397669053578e-01, 8.088618921039e-05, 1.6518e-01, 1.4670e-03, - 2DIAGNOSTIC, 72, -8.406046443076e-01, 8.199646399768e-05, 1.6690e-01, 1.7159e-03, - 2DIAGNOSTIC, 73, -8.412281570349e-01, 8.093381150425e-05, 1.6857e-01, 1.6680e-03, - 2DIAGNOSTIC, 74, -8.403160101328e-01, 7.064600818633e-05, 1.7069e-01, 2.1200e-03, - 2DIAGNOSTIC, 75, -8.403276599219e-01, 5.730282372696e-05, 1.7206e-01, 1.3740e-03, - 2DIAGNOSTIC, 76, -8.403448906318e-01, 4.194133313265e-05, 1.7373e-01, 1.6630e-03, - 2DIAGNOSTIC, 77, -8.403729534214e-01, 2.605418826132e-05, 1.7522e-01, 1.4961e-03, - 2DIAGNOSTIC, 78, -8.395243493016e-01, 1.044916440598e-05, 1.7713e-01, 1.9059e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.323587427470e-01, 1.797693134862e+308, 2.2511e-01, 4.7984e-02, - 2DIAGNOSTIC, 2, -4.322444378079e-01, 1.797693134862e+308, 2.2779e-01, 2.6829e-03, - 2DIAGNOSTIC, 3, -4.350569083151e-01, 1.797693134862e+308, 2.3042e-01, 2.6221e-03, - 2DIAGNOSTIC, 4, -4.380366606929e-01, 1.797693134862e+308, 2.3297e-01, 2.5530e-03, - 2DIAGNOSTIC, 5, -4.397955515525e-01, 1.797693134862e+308, 2.3539e-01, 2.4202e-03, - 2DIAGNOSTIC, 6, -4.488632836876e-01, 1.797693134862e+308, 2.3748e-01, 2.0928e-03, - 2DIAGNOSTIC, 7, -4.573571629063e-01, 1.797693134862e+308, 2.3958e-01, 2.0978e-03, - 2DIAGNOSTIC, 8, -4.913850724908e-01, 1.797693134862e+308, 2.4226e-01, 2.6841e-03, - 2DIAGNOSTIC, 9, -4.949708780310e-01, 1.797693134862e+308, 2.4432e-01, 2.0590e-03, - 2DIAGNOSTIC, 10, -5.066550428400e-01, 1.112908542212e-02, 2.4744e-01, 3.1199e-03, - 2DIAGNOSTIC, 11, -5.092524671630e-01, 1.145942705125e-02, 2.5121e-01, 3.7699e-03, - 2DIAGNOSTIC, 12, -5.110039799130e-01, 1.078081965251e-02, 2.5590e-01, 4.6871e-03, - 2DIAGNOSTIC, 13, -5.134557934585e-01, 9.473919517627e-03, 2.5905e-01, 3.1500e-03, - 2DIAGNOSTIC, 14, -5.207309932180e-01, 7.944488517676e-03, 2.6159e-01, 2.5411e-03, - 2DIAGNOSTIC, 15, -5.350112157832e-01, 6.542855731983e-03, 2.6406e-01, 2.4710e-03, - 2DIAGNOSTIC, 16, -5.454790758660e-01, 5.448651404832e-03, 2.6672e-01, 2.6531e-03, - 2DIAGNOSTIC, 17, -5.564818466560e-01, 4.638824697588e-03, 2.6976e-01, 3.0491e-03, - 2DIAGNOSTIC, 18, -5.598752218540e-01, 4.711171085006e-03, 2.7266e-01, 2.8951e-03, - 2DIAGNOSTIC, 19, -5.633780277492e-01, 4.546914906874e-03, 2.7519e-01, 2.5291e-03, - 2DIAGNOSTIC, 20, -5.834634004913e-01, 4.873268829068e-03, 2.7811e-01, 2.9221e-03, - 2DIAGNOSTIC, 21, -5.947683596084e-01, 5.064661661653e-03, 2.8031e-01, 2.1970e-03, - 2DIAGNOSTIC, 22, -5.989000437974e-01, 4.914462461081e-03, 2.8302e-01, 2.7082e-03, - 2DIAGNOSTIC, 23, -6.121571682183e-01, 4.706439571887e-03, 2.8531e-01, 2.2969e-03, - 2DIAGNOSTIC, 24, -6.152226710958e-01, 4.308483502033e-03, 2.8757e-01, 2.2550e-03, - 2DIAGNOSTIC, 25, -6.179412186068e-01, 3.909270681157e-03, 2.8983e-01, 2.2569e-03, - 2DIAGNOSTIC, 26, -6.220338398899e-01, 3.477108974639e-03, 2.9178e-01, 1.9572e-03, - 2DIAGNOSTIC, 27, -6.227467166156e-01, 2.992414073344e-03, 2.9401e-01, 2.2230e-03, - 2DIAGNOSTIC, 28, -6.254194238490e-01, 2.386221964889e-03, 2.9698e-01, 2.9759e-03, - 2DIAGNOSTIC, 29, -6.262814442336e-01, 1.676046222568e-03, 2.9930e-01, 2.3150e-03, - 2DIAGNOSTIC, 30, -6.264893868187e-01, 1.218972947271e-03, 3.0139e-01, 2.0931e-03, - 2DIAGNOSTIC, 31, -6.268995325748e-01, 8.809754095597e-04, 3.0346e-01, 2.0730e-03, - 2DIAGNOSTIC, 32, -6.277747111355e-01, 5.607701113195e-04, 3.0641e-01, 2.9521e-03, - 2DIAGNOSTIC, 33, -6.280980142506e-01, 4.233496903729e-04, 3.0863e-01, 2.2130e-03, - 2DIAGNOSTIC, 34, -6.286645450220e-01, 3.100982141945e-04, 3.1147e-01, 2.8460e-03, - 2DIAGNOSTIC, 35, -6.288087087571e-01, 2.161421100769e-04, 3.1405e-01, 2.5802e-03, - 2DIAGNOSTIC, 36, -6.289828712700e-01, 1.689902272009e-04, 3.1658e-01, 2.5239e-03, - 2DIAGNOSTIC, 37, -6.293291085757e-01, 1.224250665372e-04, 3.1913e-01, 2.5480e-03, - 2DIAGNOSTIC, 38, -6.301821182600e-01, 1.140148820551e-04, 3.2287e-01, 3.7470e-03, - 2DIAGNOSTIC, 39, -6.303542633804e-01, 1.086338982493e-04, 3.2517e-01, 2.2969e-03, - 2DIAGNOSTIC, 40, -6.307559397593e-01, 1.011638610296e-04, 3.2746e-01, 2.2919e-03, - 2DIAGNOSTIC, 41, -6.315011735089e-01, 9.864970741871e-05, 3.2974e-01, 2.2771e-03, - 2DIAGNOSTIC, 42, -6.320124318199e-01, 1.033096336257e-04, 3.3229e-01, 2.5511e-03, - 2DIAGNOSTIC, 43, -6.321883488586e-01, 1.034814493847e-04, 3.3459e-01, 2.2969e-03, - 2DIAGNOSTIC, 44, -6.323127986341e-01, 1.018322752036e-04, 3.3684e-01, 2.2509e-03, - 2DIAGNOSTIC, 45, -6.325859537164e-01, 9.536952102922e-05, 3.3966e-01, 2.8179e-03, - 2DIAGNOSTIC, 46, -6.335227122719e-01, 9.205170552410e-05, 3.4254e-01, 2.8811e-03, - 2DIAGNOSTIC, 47, -6.342690745139e-01, 9.120992120561e-05, 3.4544e-01, 2.9070e-03, - 2DIAGNOSTIC, 48, -6.400469605309e-01, 1.502964023451e-04, 3.4873e-01, 3.2871e-03, - 2DIAGNOSTIC, 49, -6.430259742897e-01, 2.228013435126e-04, 3.5105e-01, 2.3220e-03, - 2DIAGNOSTIC, 50, -6.494301643635e-01, 3.377176198189e-04, 3.5366e-01, 2.6081e-03, - 2DIAGNOSTIC, 51, -6.518611209719e-01, 4.451506385169e-04, 3.5623e-01, 2.5659e-03, - 2DIAGNOSTIC, 52, -6.530455587736e-01, 5.215728122245e-04, 3.5912e-01, 2.8930e-03, - 2DIAGNOSTIC, 53, -6.535436746533e-01, 5.511325373543e-04, 3.6191e-01, 2.7900e-03, - 2DIAGNOSTIC, 54, -6.537458156467e-01, 5.293224181392e-04, 3.6411e-01, 2.2051e-03, - 2DIAGNOSTIC, 55, -6.549335939167e-01, 4.703935657129e-04, 3.6631e-01, 2.1930e-03, - 2DIAGNOSTIC, 56, -6.553337454093e-01, 3.804417275692e-04, 3.6853e-01, 2.2180e-03, - 2DIAGNOSTIC, 57, -6.555137594783e-01, 2.650645126021e-04, 3.7110e-01, 2.5759e-03, - 2DIAGNOSTIC, 58, -6.557402510381e-01, 1.792324772030e-04, 3.7343e-01, 2.3239e-03, - 2DIAGNOSTIC, 59, -6.571091223347e-01, 1.139666135020e-04, 3.7687e-01, 3.4451e-03, - 2DIAGNOSTIC, 60, -6.594060419192e-01, 1.093932246947e-04, 3.7930e-01, 2.4290e-03, - 2DIAGNOSTIC, 61, -6.596346263115e-01, 1.148891773849e-04, 3.8215e-01, 2.8520e-03, - 2DIAGNOSTIC, 62, -6.606891967651e-01, 1.269163788289e-04, 3.8465e-01, 2.5010e-03, - 2DIAGNOSTIC, 63, -6.621144332750e-01, 1.411375615602e-04, 3.8724e-01, 2.5871e-03, - 2DIAGNOSTIC, 64, -6.625425299961e-01, 1.454436636059e-04, 3.8984e-01, 2.6031e-03, - 2DIAGNOSTIC, 65, -6.629088318574e-01, 1.468926824961e-04, 3.9243e-01, 2.5861e-03, - 2DIAGNOSTIC, 66, -6.631863897761e-01, 1.392724421661e-04, 3.9483e-01, 2.3999e-03, - 2DIAGNOSTIC, 67, -6.635022594394e-01, 1.222758487928e-04, 3.9759e-01, 2.7659e-03, - 2DIAGNOSTIC, 68, -6.635617736275e-01, 9.586015351899e-05, 4.0031e-01, 2.7161e-03, - 2DIAGNOSTIC, 69, -6.636206490197e-01, 7.057608026520e-05, 4.0322e-01, 2.9089e-03, - 2DIAGNOSTIC, 70, -6.643929270573e-01, 6.030022864476e-05, 4.0776e-01, 4.5440e-03, - 2DIAGNOSTIC, 71, -6.644934444482e-01, 4.655594685652e-05, 4.1137e-01, 3.6070e-03, - 2DIAGNOSTIC, 72, -6.647023279111e-01, 3.690140568201e-05, 4.1460e-01, 3.2301e-03, - 2DIAGNOSTIC, 73, -6.649775904611e-01, 3.503868866607e-05, 4.1702e-01, 2.4168e-03, - 2DIAGNOSTIC, 74, -6.652188896362e-01, 3.410207259962e-05, 4.1976e-01, 2.7449e-03, - 2DIAGNOSTIC, 75, -6.653943186412e-01, 3.324484080219e-05, 4.2219e-01, 2.4290e-03, - 2DIAGNOSTIC, 76, -6.654256907016e-01, 3.109902958829e-05, 4.2494e-01, 2.7440e-03, - 2DIAGNOSTIC, 77, -6.655425961640e-01, 2.877059660784e-05, 4.2727e-01, 2.3329e-03, - 2DIAGNOSTIC, 78, -6.658006933375e-01, 2.570266975746e-05, 4.3023e-01, 2.9650e-03, - 2DIAGNOSTIC, 79, -6.661047749079e-01, 2.226453023331e-05, 4.3255e-01, 2.3170e-03, - 2DIAGNOSTIC, 80, -6.661650579143e-01, 2.166150843601e-05, 4.3526e-01, 2.7111e-03, - 2DIAGNOSTIC, 81, -6.665476487069e-01, 2.184570302839e-05, 4.3791e-01, 2.6510e-03, - 2DIAGNOSTIC, 82, -6.666082042249e-01, 2.143174307938e-05, 4.4058e-01, 2.6700e-03, - 2DIAGNOSTIC, 83, -6.665720561676e-01, 2.030774446727e-05, 4.4358e-01, 2.9969e-03, - 2DIAGNOSTIC, 84, -6.666577477741e-01, 1.909896068066e-05, 4.4629e-01, 2.7080e-03, - 2DIAGNOSTIC, 85, -6.666273525897e-01, 1.690611841633e-05, 4.4866e-01, 2.3730e-03, - 2DIAGNOSTIC, 86, -6.665403406595e-01, 1.287031089606e-05, 4.5111e-01, 2.4450e-03, - 2DIAGNOSTIC, 87, -6.668722137800e-01, 1.011652529462e-05, 4.5399e-01, 2.8870e-03, - 2DIAGNOSTIC, 88, -6.672031949830e-01, 9.527985972120e-06, 4.5756e-01, 3.5639e-03, - 2DIAGNOSTIC, 89, -6.673221317529e-01, 1.025046847904e-05, 4.6061e-01, 3.0499e-03, - 2DIAGNOSTIC, 90, -6.674060469612e-01, 1.072154551451e-05, 4.6334e-01, 2.7349e-03, - 2DIAGNOSTIC, 91, -6.674000874084e-01, 1.211556625633e-05, 4.6572e-01, 2.3839e-03, - 2DIAGNOSTIC, 92, -6.674896833210e-01, 1.308677869208e-05, 4.6851e-01, 2.7878e-03, - 2DIAGNOSTIC, 93, -6.675329881459e-01, 1.277848409992e-05, 4.7091e-01, 2.3968e-03, - 2DIAGNOSTIC, 94, -6.675074769793e-01, 1.157964855671e-05, 4.7337e-01, 2.4612e-03, - 2DIAGNOSTIC, 95, -6.675736935483e-01, 9.559309133782e-06, 4.7596e-01, 2.5909e-03, - 2DIAGNOSTIC, 96, -6.676320453107e-01, 6.530566276121e-06, 4.7871e-01, 2.7461e-03, - 2DIAGNOSTIC, 97, -6.676782615403e-01, 4.718763923694e-06, 4.8145e-01, 2.7399e-03, - 2DIAGNOSTIC, 98, -6.681341727666e-01, 6.199271907386e-06, 4.8481e-01, 3.3622e-03, - 2DIAGNOSTIC, 99, -6.681688266906e-01, 7.735687752117e-06, 4.8770e-01, 2.8949e-03, - 2DIAGNOSTIC, 100, -6.685444611281e-01, 1.065908532254e-05, 4.9108e-01, 3.3720e-03, - 2DIAGNOSTIC, 101, -6.689297119695e-01, 1.421205406446e-05, 4.9523e-01, 4.1511e-03, - 2DIAGNOSTIC, 102, -6.689463119436e-01, 1.678319576446e-05, 4.9769e-01, 2.4641e-03, - 2DIAGNOSTIC, 103, -6.689300299106e-01, 1.784989379283e-05, 5.0014e-01, 2.4519e-03, - 2DIAGNOSTIC, 104, -6.690026532320e-01, 1.741816008057e-05, 5.0299e-01, 2.8501e-03, - 2DIAGNOSTIC, 105, -6.691155128309e-01, 1.610442807012e-05, 5.0554e-01, 2.5430e-03, - 2DIAGNOSTIC, 106, -6.692441289512e-01, 1.406974271173e-05, 5.0835e-01, 2.8110e-03, - 2DIAGNOSTIC, 107, -6.693334780004e-01, 1.128301522930e-05, 5.1119e-01, 2.8422e-03, - 2DIAGNOSTIC, 108, -6.694002256151e-01, 9.741318570658e-06, 5.1460e-01, 3.4149e-03, - 2DIAGNOSTIC, 109, -6.695616444161e-01, 8.110919504119e-06, 5.1809e-01, 3.4890e-03, - 2DIAGNOSTIC, 110, -6.695961287691e-01, 7.387982311638e-06, 5.2119e-01, 3.0949e-03, - 2DIAGNOSTIC, 111, -6.696516741723e-01, 7.798954017459e-06, 5.2395e-01, 2.7621e-03, - 2DIAGNOSTIC, 112, -6.697102858116e-01, 7.791386286133e-06, 5.2654e-01, 2.5940e-03, - 2DIAGNOSTIC, 113, -6.697657313553e-01, 7.211470971437e-06, 5.2976e-01, 3.2108e-03, - 2DIAGNOSTIC, 114, -6.698359449104e-01, 6.528785561779e-06, 5.3256e-01, 2.8009e-03, - 2DIAGNOSTIC, 115, -6.699599491192e-01, 6.176920002448e-06, 5.3538e-01, 2.8229e-03, - 2DIAGNOSTIC, 116, -6.704162790945e-01, 7.540391782256e-06, 5.3917e-01, 3.7868e-03, - 2DIAGNOSTIC, 117, -6.704681137425e-01, 8.680117055819e-06, 5.4200e-01, 2.8379e-03, - 2DIAGNOSTIC, 118, -6.704101576378e-01, 9.024807139421e-06, 5.4446e-01, 2.4569e-03, - 2DIAGNOSTIC, 119, -6.704336646732e-01, 9.252434525400e-06, 5.4694e-01, 2.4831e-03, - 2DIAGNOSTIC, 120, -6.704897394901e-01, 8.930964484250e-06, 5.4975e-01, 2.8050e-03, - 2DIAGNOSTIC, 121, -6.707368371242e-01, 8.868801386543e-06, 5.5345e-01, 3.6988e-03, - 2DIAGNOSTIC, 122, -6.708327850279e-01, 8.521403977562e-06, 5.5702e-01, 3.5701e-03, - 2DIAGNOSTIC, 123, -6.708517907309e-01, 7.686389434441e-06, 5.6012e-01, 3.1061e-03, - 2DIAGNOSTIC, 124, -6.709079198655e-01, 6.632841601227e-06, 5.6306e-01, 2.9390e-03, - 2DIAGNOSTIC, 125, -6.708743827815e-01, 5.252343835860e-06, 5.6593e-01, 2.8622e-03, - 2DIAGNOSTIC, 126, -6.708385257677e-01, 4.901021928369e-06, 5.6851e-01, 2.5890e-03, - 2DIAGNOSTIC, 127, -6.708784885346e-01, 4.438495808947e-06, 5.7103e-01, 2.5170e-03, - 2DIAGNOSTIC, 128, -6.709015229925e-01, 3.459601113571e-06, 5.7524e-01, 4.2062e-03, - 2DIAGNOSTIC, 129, -6.709034679624e-01, 2.280228406168e-06, 5.7773e-01, 2.4910e-03, - 2DIAGNOSTIC, 130, -6.709050918815e-01, 1.109436900352e-06, 5.8022e-01, 2.4951e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.070643206258e-01, 1.797693134862e+308, 6.5276e-01, 7.2532e-02, - 2DIAGNOSTIC, 2, -5.073742987011e-01, 1.797693134862e+308, 6.6607e-01, 1.3314e-02, - 2DIAGNOSTIC, 3, -5.076214136612e-01, 1.797693134862e+308, 6.7919e-01, 1.3117e-02, - 2DIAGNOSTIC, 4, -5.077521558515e-01, 1.797693134862e+308, 6.9223e-01, 1.3039e-02, - 2DIAGNOSTIC, 5, -5.078657561762e-01, 1.797693134862e+308, 7.0527e-01, 1.3044e-02, - 2DIAGNOSTIC, 6, -5.079457481813e-01, 1.797693134862e+308, 7.1740e-01, 1.2133e-02, - 2DIAGNOSTIC, 7, -5.082715979431e-01, 1.797693134862e+308, 7.3121e-01, 1.3809e-02, - 2DIAGNOSTIC, 8, -5.087471528321e-01, 1.797693134862e+308, 7.4879e-01, 1.7581e-02, - 2DIAGNOSTIC, 9, -5.087458918831e-01, 1.797693134862e+308, 7.6267e-01, 1.3880e-02, - 2DIAGNOSTIC, 10, -5.088551212099e-01, 2.289255977821e-04, 7.7507e-01, 1.2400e-02, - 2DIAGNOSTIC, 11, -5.091251390001e-01, 2.058592800442e-04, 7.8980e-01, 1.4728e-02, - 2DIAGNOSTIC, 12, -5.093902221225e-01, 1.944160357385e-04, 8.0426e-01, 1.4459e-02, - 2DIAGNOSTIC, 13, -5.094829882941e-01, 1.814878032745e-04, 8.1809e-01, 1.3827e-02, - 2DIAGNOSTIC, 14, -5.095284929564e-01, 1.614187752560e-04, 8.3352e-01, 1.5430e-02, - 2DIAGNOSTIC, 15, -5.095540805797e-01, 1.350881534253e-04, 8.4758e-01, 1.4067e-02, - 2DIAGNOSTIC, 16, -5.095591543676e-01, 1.025463758081e-04, 8.6001e-01, 1.2424e-02, - 2DIAGNOSTIC, 17, -5.095688406525e-01, 7.506076820686e-05, 8.7256e-01, 1.2550e-02, - 2DIAGNOSTIC, 18, -5.095750894786e-01, 5.892989423530e-05, 8.8644e-01, 1.3883e-02, - 2DIAGNOSTIC, 19, -5.095882933848e-01, 3.965037636723e-05, 9.0075e-01, 1.4310e-02, - 2DIAGNOSTIC, 20, -5.095983298009e-01, 2.199869066114e-05, 9.1358e-01, 1.2831e-02, - 2DIAGNOSTIC, 21, -5.096365715095e-01, 1.217019316690e-05, 9.2938e-01, 1.5795e-02, - 2DIAGNOSTIC, 22, -5.096386503912e-01, 8.957343203962e-06, 9.4505e-01, 1.5678e-02, - 2DIAGNOSTIC, 23, -5.096361332634e-01, 7.500145183907e-06, 9.5937e-01, 1.4314e-02, - 2DIAGNOSTIC, 24, -5.096303294705e-01, 6.513380179547e-06, 9.7367e-01, 1.4299e-02, - 2DIAGNOSTIC, 25, -5.096181523457e-01, 5.415595046729e-06, 9.8661e-01, 1.2943e-02, - 2DIAGNOSTIC, 26, -5.096104718087e-01, 3.947433545218e-06, 9.9908e-01, 1.2467e-02, - 2DIAGNOSTIC, 27, -5.096119580419e-01, 2.561820692609e-06, 1.0118e+00, 1.2733e-02, - 2DIAGNOSTIC, 28, -5.096141881193e-01, 1.315787345239e-06, 1.0242e+00, 1.2356e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.252633022737e-01, 1.797693134862e+308, 1.2396e+00, 2.1542e-01, - Elapsed time (stage 0): 1.2727e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.353774157000e-01, 1.797693134862e+308, 4.4693e-02, 4.4693e-02, - 2DIAGNOSTIC, 2, -9.385070877350e-01, 1.797693134862e+308, 4.5931e-02, 1.2379e-03, - 2DIAGNOSTIC, 3, -9.451879690486e-01, 1.797693134862e+308, 4.7190e-02, 1.2589e-03, - 2DIAGNOSTIC, 4, -9.583533365010e-01, 1.797693134862e+308, 4.8529e-02, 1.3390e-03, - 2DIAGNOSTIC, 5, -9.783582576849e-01, 1.797693134862e+308, 4.9872e-02, 1.3430e-03, - 2DIAGNOSTIC, 6, -9.945143602633e-01, 1.797693134862e+308, 5.1221e-02, 1.3490e-03, - 2DIAGNOSTIC, 7, -1.003973964287e+00, 1.797693134862e+308, 5.2570e-02, 1.3490e-03, - 2DIAGNOSTIC, 8, -1.034641623609e+00, 1.797693134862e+308, 5.4097e-02, 1.5271e-03, - 2DIAGNOSTIC, 9, -1.065781531656e+00, 1.797693134862e+308, 5.6180e-02, 2.0831e-03, - 2DIAGNOSTIC, 10, -1.084844687284e+00, 9.937501961329e-03, 5.7694e-02, 1.5140e-03, - 2DIAGNOSTIC, 11, -1.094928966271e+00, 9.834006495993e-03, 5.9441e-02, 1.7471e-03, - 2DIAGNOSTIC, 12, -1.107515095967e+00, 9.242553195757e-03, 6.1315e-02, 1.8740e-03, - 2DIAGNOSTIC, 13, -1.110809659325e+00, 8.123602250832e-03, 6.2764e-02, 1.4491e-03, - 2DIAGNOSTIC, 14, -1.124755755288e+00, 6.960326405694e-03, 6.4215e-02, 1.4510e-03, - 2DIAGNOSTIC, 15, -1.131607716212e+00, 5.815654869559e-03, 6.6768e-02, 2.5530e-03, - 2DIAGNOSTIC, 16, -1.133877085792e+00, 4.616615329177e-03, 6.8704e-02, 1.9360e-03, - 2DIAGNOSTIC, 17, -1.134820208953e+00, 3.310727925466e-03, 7.0234e-02, 1.5299e-03, - 2DIAGNOSTIC, 18, -1.136986134036e+00, 2.342323464972e-03, 7.1681e-02, 1.4470e-03, - 2DIAGNOSTIC, 19, -1.139190005720e+00, 1.733025560475e-03, 7.3200e-02, 1.5190e-03, - 2DIAGNOSTIC, 20, -1.141138059490e+00, 1.306861784150e-03, 7.4703e-02, 1.5030e-03, - 2DIAGNOSTIC, 21, -1.143163100467e+00, 9.551188325820e-04, 7.6149e-02, 1.4460e-03, - 2DIAGNOSTIC, 22, -1.148581938148e+00, 7.685107481698e-04, 7.7838e-02, 1.6890e-03, - 2DIAGNOSTIC, 23, -1.152951450892e+00, 6.111550092370e-04, 7.9477e-02, 1.6391e-03, - 2DIAGNOSTIC, 24, -1.153211433744e+00, 5.648595662743e-04, 8.1869e-02, 2.3921e-03, - 2DIAGNOSTIC, 25, -1.152877441833e+00, 5.392259567691e-04, 8.3321e-02, 1.4520e-03, - 2DIAGNOSTIC, 26, -1.156435837353e+00, 5.246976267440e-04, 8.4778e-02, 1.4570e-03, - 2DIAGNOSTIC, 27, -1.159290832624e+00, 4.968450365259e-04, 8.6233e-02, 1.4551e-03, - 2DIAGNOSTIC, 28, -1.160766992677e+00, 4.571266173131e-04, 8.7915e-02, 1.6820e-03, - 2DIAGNOSTIC, 29, -1.160782168750e+00, 3.981275765483e-04, 8.9893e-02, 1.9779e-03, - 2DIAGNOSTIC, 30, -1.160470488911e+00, 3.212260178811e-04, 9.2061e-02, 2.1682e-03, - 2DIAGNOSTIC, 31, -1.161653497109e+00, 2.451029702047e-04, 9.3509e-02, 1.4479e-03, - 2DIAGNOSTIC, 32, -1.162678442783e+00, 2.012841853060e-04, 9.4966e-02, 1.4570e-03, - 2DIAGNOSTIC, 33, -1.163161562135e+00, 1.793117194866e-04, 9.6415e-02, 1.4489e-03, - 2DIAGNOSTIC, 34, -1.163542505192e+00, 1.475316857920e-04, 9.7881e-02, 1.4660e-03, - 2DIAGNOSTIC, 35, -1.164029106767e+00, 1.046616839779e-04, 9.9535e-02, 1.6541e-03, - 2DIAGNOSTIC, 36, -1.165026214805e+00, 8.642016052815e-05, 1.0165e-01, 2.1188e-03, - 2DIAGNOSTIC, 37, -1.164534282042e+00, 7.691428544811e-05, 1.0310e-01, 1.4460e-03, - 2DIAGNOSTIC, 38, -1.164613591651e+00, 7.145942570629e-05, 1.0456e-01, 1.4629e-03, - 2DIAGNOSTIC, 39, -1.164848015673e+00, 6.147126299489e-05, 1.0648e-01, 1.9140e-03, - 2DIAGNOSTIC, 40, -1.165119951729e+00, 4.571756319418e-05, 1.0794e-01, 1.4610e-03, - 2DIAGNOSTIC, 41, -1.165358434044e+00, 3.512556624172e-05, 1.0966e-01, 1.7262e-03, - 2DIAGNOSTIC, 42, -1.165547220287e+00, 2.919330241565e-05, 1.1142e-01, 1.7610e-03, - 2DIAGNOSTIC, 43, -1.165798609366e+00, 2.527500743786e-05, 1.1291e-01, 1.4839e-03, - 2DIAGNOSTIC, 44, -1.165987540258e+00, 2.241138239916e-05, 1.1436e-01, 1.4560e-03, - 2DIAGNOSTIC, 45, -1.166057594156e+00, 2.054230569364e-05, 1.1649e-01, 2.1300e-03, - 2DIAGNOSTIC, 46, -1.166943641945e+00, 2.737828381194e-05, 1.1794e-01, 1.4429e-03, - 2DIAGNOSTIC, 47, -1.165827575739e+00, 2.254844090490e-05, 1.2009e-01, 2.1551e-03, - 2DIAGNOSTIC, 48, -1.165852946309e+00, 1.659581867620e-05, 1.2155e-01, 1.4529e-03, - 2DIAGNOSTIC, 49, -1.166008766006e+00, 1.136356664692e-05, 1.2303e-01, 1.4832e-03, - 2DIAGNOSTIC, 50, -1.165002697400e+00, 1.460397208976e-06, 1.2453e-01, 1.4999e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.522553157887e-01, 1.797693134862e+308, 1.7049e-01, 4.5957e-02, - 2DIAGNOSTIC, 2, -7.516555241220e-01, 1.797693134862e+308, 1.7337e-01, 2.8820e-03, - 2DIAGNOSTIC, 3, -7.527052050339e-01, 1.797693134862e+308, 1.7617e-01, 2.8050e-03, - 2DIAGNOSTIC, 4, -7.545066340176e-01, 1.797693134862e+308, 1.7882e-01, 2.6500e-03, - 2DIAGNOSTIC, 5, -7.573658381639e-01, 1.797693134862e+308, 1.8116e-01, 2.3379e-03, - 2DIAGNOSTIC, 6, -7.618627306588e-01, 1.797693134862e+308, 1.8375e-01, 2.5930e-03, - 2DIAGNOSTIC, 7, -7.682367377636e-01, 1.797693134862e+308, 1.8852e-01, 4.7660e-03, - 2DIAGNOSTIC, 8, -7.683229046183e-01, 1.797693134862e+308, 1.9074e-01, 2.2159e-03, - 2DIAGNOSTIC, 9, -7.685185481747e-01, 1.797693134862e+308, 1.9323e-01, 2.4970e-03, - 2DIAGNOSTIC, 10, -7.687891265680e-01, 1.848907160890e-03, 1.9589e-01, 2.6579e-03, - 2DIAGNOSTIC, 11, -7.692286928193e-01, 1.619572565500e-03, 1.9865e-01, 2.7609e-03, - 2DIAGNOSTIC, 12, -7.699127144318e-01, 1.283643117126e-03, 2.0135e-01, 2.6979e-03, - 2DIAGNOSTIC, 13, -7.709988356739e-01, 9.460319459227e-04, 2.0390e-01, 2.5520e-03, - 2DIAGNOSTIC, 14, -7.727102532092e-01, 6.663190464837e-04, 2.0641e-01, 2.5120e-03, - 2DIAGNOSTIC, 15, -7.746365705049e-01, 4.803136004828e-04, 2.0891e-01, 2.5001e-03, - 2DIAGNOSTIC, 16, -7.761200657476e-01, 4.081084997756e-04, 2.1142e-01, 2.5029e-03, - 2DIAGNOSTIC, 17, -7.775264671031e-01, 4.769310234349e-04, 2.1442e-01, 3.0081e-03, - 2DIAGNOSTIC, 18, -7.781650387642e-01, 5.087799494810e-04, 2.1680e-01, 2.3720e-03, - 2DIAGNOSTIC, 19, -7.787007440351e-01, 5.043611201463e-04, 2.1945e-01, 2.6510e-03, - 2DIAGNOSTIC, 20, -7.793569551926e-01, 4.705611458609e-04, 2.2211e-01, 2.6591e-03, - 2DIAGNOSTIC, 21, -7.801151948001e-01, 4.171386842065e-04, 2.2513e-01, 3.0241e-03, - 2DIAGNOSTIC, 22, -7.817401164293e-01, 3.683678233613e-04, 2.2782e-01, 2.6891e-03, - 2DIAGNOSTIC, 23, -7.822647576464e-01, 3.147199196918e-04, 2.3024e-01, 2.4211e-03, - 2DIAGNOSTIC, 24, -7.828700744818e-01, 2.717139351077e-04, 2.3395e-01, 3.7122e-03, - 2DIAGNOSTIC, 25, -7.829792071020e-01, 2.366347227526e-04, 2.3643e-01, 2.4772e-03, - 2DIAGNOSTIC, 26, -7.832761946055e-01, 2.069557241681e-04, 2.3922e-01, 2.7921e-03, - 2DIAGNOSTIC, 27, -7.834354466539e-01, 1.810876707051e-04, 2.4167e-01, 2.4459e-03, - 2DIAGNOSTIC, 28, -7.834910741650e-01, 1.491141387061e-04, 2.4421e-01, 2.5458e-03, - 2DIAGNOSTIC, 29, -7.835422186596e-01, 1.129778019259e-04, 2.4685e-01, 2.6350e-03, - 2DIAGNOSTIC, 30, -7.835973759864e-01, 7.747114198228e-05, 2.4945e-01, 2.6040e-03, - 2DIAGNOSTIC, 31, -7.837791575191e-01, 4.777452933484e-05, 2.5236e-01, 2.9099e-03, - 2DIAGNOSTIC, 32, -7.839382779555e-01, 3.586462834975e-05, 2.5511e-01, 2.7449e-03, - 2DIAGNOSTIC, 33, -7.839506804743e-01, 2.719949780114e-05, 2.5850e-01, 3.3879e-03, - 2DIAGNOSTIC, 34, -7.840660813159e-01, 2.441403046440e-05, 2.6099e-01, 2.4929e-03, - 2DIAGNOSTIC, 35, -7.840471488395e-01, 2.042235922509e-05, 2.6344e-01, 2.4531e-03, - 2DIAGNOSTIC, 36, -7.841575323802e-01, 1.890451486521e-05, 2.6589e-01, 2.4459e-03, - 2DIAGNOSTIC, 37, -7.845421178699e-01, 2.109798144086e-05, 2.6908e-01, 3.1879e-03, - 2DIAGNOSTIC, 38, -7.847024369027e-01, 2.324501122105e-05, 2.7186e-01, 2.7800e-03, - 2DIAGNOSTIC, 39, -7.847845519159e-01, 2.442851537343e-05, 2.7433e-01, 2.4738e-03, - 2DIAGNOSTIC, 40, -7.848077903621e-01, 2.404042455385e-05, 2.7682e-01, 2.4910e-03, - 2DIAGNOSTIC, 41, -7.848754362470e-01, 2.365814458295e-05, 2.7926e-01, 2.4419e-03, - 2DIAGNOSTIC, 42, -7.850345050678e-01, 2.382350800245e-05, 2.8295e-01, 3.6869e-03, - 2DIAGNOSTIC, 43, -7.851085773991e-01, 2.243371185847e-05, 2.8543e-01, 2.4800e-03, - 2DIAGNOSTIC, 44, -7.852755466250e-01, 2.144239561427e-05, 2.8820e-01, 2.7659e-03, - 2DIAGNOSTIC, 45, -7.856363184100e-01, 2.130992326754e-05, 2.9129e-01, 3.0921e-03, - 2DIAGNOSTIC, 46, -7.861304476786e-01, 2.388795698865e-05, 2.9501e-01, 3.7270e-03, - 2DIAGNOSTIC, 47, -7.863995277047e-01, 2.911725725022e-05, 2.9757e-01, 2.5530e-03, - 2DIAGNOSTIC, 48, -7.864388056683e-01, 3.292935602794e-05, 3.0045e-01, 2.8808e-03, - 2DIAGNOSTIC, 49, -7.864072873542e-01, 3.393444509991e-05, 3.0365e-01, 3.1991e-03, - 2DIAGNOSTIC, 50, -7.864227084215e-01, 3.198032647872e-05, 3.0607e-01, 2.4252e-03, - 2DIAGNOSTIC, 51, -7.862797598613e-01, 2.647506398341e-05, 3.0879e-01, 2.7211e-03, - 2DIAGNOSTIC, 52, -7.863290022936e-01, 2.018950698029e-05, 3.1156e-01, 2.7640e-03, - 2DIAGNOSTIC, 53, -7.863556628810e-01, 1.298199211500e-05, 3.1433e-01, 2.7680e-03, - 2DIAGNOSTIC, 54, -7.864483791162e-01, 6.597849140713e-06, 3.1707e-01, 2.7430e-03, - 2DIAGNOSTIC, 55, -7.864006172641e-01, 1.874096773765e-06, 3.1984e-01, 2.7740e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.911400476754e-01, 1.797693134862e+308, 3.9112e-01, 7.1280e-02, - 2DIAGNOSTIC, 2, -5.915608401470e-01, 1.797693134862e+308, 4.0541e-01, 1.4285e-02, - 2DIAGNOSTIC, 3, -5.923273652663e-01, 1.797693134862e+308, 4.1920e-01, 1.3795e-02, - 2DIAGNOSTIC, 4, -5.936269716244e-01, 1.797693134862e+308, 4.3354e-01, 1.4336e-02, - 2DIAGNOSTIC, 5, -5.954305998505e-01, 1.797693134862e+308, 4.4774e-01, 1.4205e-02, - 2DIAGNOSTIC, 6, -5.965837939103e-01, 1.797693134862e+308, 4.6198e-01, 1.4238e-02, - 2DIAGNOSTIC, 7, -5.979375472801e-01, 1.797693134862e+308, 4.7618e-01, 1.4203e-02, - 2DIAGNOSTIC, 8, -5.999366455378e-01, 1.797693134862e+308, 4.9547e-01, 1.9288e-02, - 2DIAGNOSTIC, 9, -6.008161756583e-01, 1.797693134862e+308, 5.0917e-01, 1.3699e-02, - 2DIAGNOSTIC, 10, -6.012699317380e-01, 1.231496806787e-03, 5.2319e-01, 1.4016e-02, - 2DIAGNOSTIC, 11, -6.024989862224e-01, 1.134229954870e-03, 5.4374e-01, 2.0550e-02, - 2DIAGNOSTIC, 12, -6.025716142229e-01, 9.704565473939e-04, 5.5759e-01, 1.3849e-02, - 2DIAGNOSTIC, 13, -6.026407553488e-01, 7.746514363857e-04, 5.7143e-01, 1.3839e-02, - 2DIAGNOSTIC, 14, -6.027007024797e-01, 5.823916328615e-04, 5.9267e-01, 2.1243e-02, - 2DIAGNOSTIC, 15, -6.026953448356e-01, 4.199973006137e-04, 6.0792e-01, 1.5249e-02, - 2DIAGNOSTIC, 16, -6.027017764921e-01, 2.735325526256e-04, 6.2394e-01, 1.6018e-02, - 2DIAGNOSTIC, 17, -6.027015437613e-01, 1.559679920723e-04, 6.4039e-01, 1.6453e-02, - 2DIAGNOSTIC, 18, -6.026997766084e-01, 8.993140164096e-05, 6.5457e-01, 1.4187e-02, - 2DIAGNOSTIC, 19, -6.026925627006e-01, 4.454486548352e-05, 6.6900e-01, 1.4429e-02, - 2DIAGNOSTIC, 20, -6.026907848947e-01, 9.668975440878e-06, 6.8115e-01, 1.2147e-02, - 2DIAGNOSTIC, 21, -6.026893888143e-01, 5.084782081465e-06, 6.9305e-01, 1.1901e-02, - 2DIAGNOSTIC, 22, -6.026914218148e-01, 2.163909886312e-06, 7.0646e-01, 1.3411e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.993589436259e-01, 1.797693134862e+308, 9.2410e-01, 2.1764e-01, - Elapsed time (stage 1): 9.4448e-01 - - -Total elapsed time: 2.2186e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 05:58:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 34 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 52 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 86.89% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 86.89% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[14911 879 480 384 14990 3335 559 562 648 0 1426 5610 - 0 0 225 0 0 200 189 0 0 169 0 0 - 0 0 0 0 0 0 0 173 0 0] -[185031 30338 28507 40767 16981 10219 15060 12183 12656 8648 - 831 2756 5185 1248 857 897 457 840 886 943 - 181 262 181 404 206 0 0 0 0 0 - 0 0 0 0] -[ 175 360 265 0 0 191 8691 0 0 631 0 0 - 0 2722 0 1832 15517 14481 0 7521 0 0 0 0 - 819 6594 795 210 0 0 0 0 0 0] -[ 66753 1511 7835 1363 0 14361 734 697 2277 0 - 368 0 2448 0 1769 0 188283 2482 767 330 - 0 1052 865 609 14368 0 17206 0 236 476 - 1073 737 793 1178] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:05:35 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:05:40 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:33 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:33 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:33 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:43 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:46 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC009 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:09:58 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:10:23 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:12:08 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:12:09 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:13:25 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:13:26 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55dd9d03ad20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.2435, 112.093, -136.649] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dd9ceb1730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fd3cab16010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55dd9d03e020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 50.8095, -129.488] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dd9d0440c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fd3c7457010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55dd9d054840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [74.2435, 112.093, -136.649] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dd9d040890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fd3c2783010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55dd9d0583e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 50.8095, -129.488] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55dd9d047130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fd3bf0c4010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.353885715720e-01, 1.797693134862e+308, 2.3746e-01, 2.3746e-01, - 2DIAGNOSTIC, 2, -4.363672491289e-01, 1.797693134862e+308, 2.3873e-01, 1.2619e-03, - 2DIAGNOSTIC, 3, -4.388297089781e-01, 1.797693134862e+308, 2.4011e-01, 1.3831e-03, - 2DIAGNOSTIC, 4, -4.436267515299e-01, 1.797693134862e+308, 2.4132e-01, 1.2109e-03, - 2DIAGNOSTIC, 5, -4.484997539013e-01, 1.797693134862e+308, 2.4264e-01, 1.3220e-03, - 2DIAGNOSTIC, 6, -4.581598792372e-01, 1.797693134862e+308, 2.4392e-01, 1.2782e-03, - 2DIAGNOSTIC, 7, -4.724131384342e-01, 1.797693134862e+308, 2.4539e-01, 1.4729e-03, - 2DIAGNOSTIC, 8, -4.843636812789e-01, 1.797693134862e+308, 2.4690e-01, 1.5030e-03, - 2DIAGNOSTIC, 9, -4.873950775233e-01, 1.797693134862e+308, 2.4821e-01, 1.3149e-03, - 2DIAGNOSTIC, 10, -5.258447698612e-01, 1.117535437713e-02, 2.4974e-01, 1.5330e-03, - 2DIAGNOSTIC, 11, -5.305710671679e-01, 1.211942182545e-02, 2.5138e-01, 1.6360e-03, - 2DIAGNOSTIC, 12, -5.366641294590e-01, 1.215898736923e-02, 2.5303e-01, 1.6520e-03, - 2DIAGNOSTIC, 13, -5.438050795836e-01, 1.154423239258e-02, 2.5588e-01, 2.8429e-03, - 2DIAGNOSTIC, 14, -5.442970457456e-01, 1.020674593473e-02, 2.5758e-01, 1.7021e-03, - 2DIAGNOSTIC, 15, -5.461909706817e-01, 8.387898577661e-03, 2.5921e-01, 1.6289e-03, - 2DIAGNOSTIC, 16, -5.474460707934e-01, 6.436366676513e-03, 2.6129e-01, 2.0821e-03, - 2DIAGNOSTIC, 17, -5.460939790113e-01, 4.591417091055e-03, 2.6302e-01, 1.7340e-03, - 2DIAGNOSTIC, 18, -5.462282882998e-01, 2.944700229918e-03, 2.6455e-01, 1.5240e-03, - 2DIAGNOSTIC, 19, -5.463173683315e-01, 1.279304771373e-03, 2.6596e-01, 1.4141e-03, - 2DIAGNOSTIC, 20, -5.468027723165e-01, 7.757416208046e-04, 2.6742e-01, 1.4541e-03, - 2DIAGNOSTIC, 21, -5.469113237736e-01, 3.786795258503e-04, 2.6888e-01, 1.4632e-03, - 2DIAGNOSTIC, 22, -5.470906420690e-01, 1.414889576765e-04, 2.7078e-01, 1.9040e-03, - 2DIAGNOSTIC, 23, -5.474762459362e-01, 9.701694487936e-05, 2.7621e-01, 5.4281e-03, - 2DIAGNOSTIC, 24, -5.474762450623e-01, 5.732795146253e-05, 2.7769e-01, 1.4770e-03, - 2DIAGNOSTIC, 25, -5.474762462738e-01, 5.670309218769e-05, 2.7910e-01, 1.4141e-03, - 2DIAGNOSTIC, 26, -5.474762483224e-01, 7.859240641303e-05, 2.8058e-01, 1.4741e-03, - 2DIAGNOSTIC, 27, -5.474762517861e-01, 6.384764194953e-05, 2.8207e-01, 1.4901e-03, - 2DIAGNOSTIC, 28, -5.474762576420e-01, 4.693136169926e-05, 2.8352e-01, 1.4529e-03, - 2DIAGNOSTIC, 29, -5.474762675413e-01, 2.841907897454e-05, 2.8504e-01, 1.5209e-03, - 2DIAGNOSTIC, 30, -5.474762842721e-01, 1.761498079793e-05, 2.8650e-01, 1.4582e-03, - 2DIAGNOSTIC, 31, -5.474763124983e-01, 7.897411494200e-06, 2.8795e-01, 1.4510e-03, - 2DIAGNOSTIC, 32, -5.474763576188e-01, 1.050498713587e-06, 2.8943e-01, 1.4839e-03, - 2DIAGNOSTIC, 33, -5.474764337565e-01, 1.019351343695e-06, 2.9090e-01, 1.4651e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.997277361857e-01, 1.797693134862e+308, 5.1480e-01, 2.2391e-01, - 2DIAGNOSTIC, 2, -3.998233690452e-01, 1.797693134862e+308, 5.1693e-01, 2.1241e-03, - 2DIAGNOSTIC, 3, -4.024109052846e-01, 1.797693134862e+308, 5.1897e-01, 2.0409e-03, - 2DIAGNOSTIC, 4, -4.047742445566e-01, 1.797693134862e+308, 5.2111e-01, 2.1381e-03, - 2DIAGNOSTIC, 5, -4.061377470743e-01, 1.797693134862e+308, 5.2327e-01, 2.1670e-03, - 2DIAGNOSTIC, 6, -4.080467208052e-01, 1.797693134862e+308, 5.2552e-01, 2.2418e-03, - 2DIAGNOSTIC, 7, -4.108523976126e-01, 1.797693134862e+308, 5.2802e-01, 2.5010e-03, - 2DIAGNOSTIC, 8, -4.184039125385e-01, 1.797693134862e+308, 5.3006e-01, 2.0449e-03, - 2DIAGNOSTIC, 9, -4.230788927354e-01, 1.797693134862e+308, 5.3249e-01, 2.4269e-03, - 2DIAGNOSTIC, 10, -4.302498096129e-01, 4.520339383848e-03, 5.3544e-01, 2.9531e-03, - 2DIAGNOSTIC, 11, -4.353223703004e-01, 4.940933431085e-03, 5.3956e-01, 4.1201e-03, - 2DIAGNOSTIC, 12, -4.367966058789e-01, 4.930328648671e-03, 5.4191e-01, 2.3501e-03, - 2DIAGNOSTIC, 13, -4.386525125893e-01, 4.707957590863e-03, 5.4429e-01, 2.3749e-03, - 2DIAGNOSTIC, 14, -4.417317557526e-01, 4.352362874510e-03, 5.4666e-01, 2.3689e-03, - 2DIAGNOSTIC, 15, -4.450527262317e-01, 3.855988433654e-03, 5.4929e-01, 2.6300e-03, - 2DIAGNOSTIC, 16, -4.466656287426e-01, 3.218142544052e-03, 5.5141e-01, 2.1241e-03, - 2DIAGNOSTIC, 17, -4.474195617806e-01, 2.502827467331e-03, 5.5362e-01, 2.2070e-03, - 2DIAGNOSTIC, 18, -4.481671059630e-01, 1.950835244187e-03, 5.5670e-01, 3.0851e-03, - 2DIAGNOSTIC, 19, -4.486329059828e-01, 1.454145279002e-03, 5.5920e-01, 2.5001e-03, - 2DIAGNOSTIC, 20, -4.488025963005e-01, 1.113861835291e-03, 5.6168e-01, 2.4791e-03, - 2DIAGNOSTIC, 21, -4.489078291615e-01, 8.679098437998e-04, 5.6387e-01, 2.1858e-03, - 2DIAGNOSTIC, 22, -4.489869091833e-01, 6.121072954363e-04, 5.6604e-01, 2.1729e-03, - 2DIAGNOSTIC, 23, -4.491800504693e-01, 3.803384358446e-04, 5.6822e-01, 2.1839e-03, - 2DIAGNOSTIC, 24, -4.501148970945e-01, 2.414678826346e-04, 5.7041e-01, 2.1870e-03, - 2DIAGNOSTIC, 25, -4.540851634851e-01, 2.822612719622e-04, 5.7296e-01, 2.5442e-03, - 2DIAGNOSTIC, 26, -4.568255895948e-01, 4.006066127151e-04, 5.7669e-01, 3.7360e-03, - 2DIAGNOSTIC, 27, -4.570180888463e-01, 4.944016431346e-04, 5.7888e-01, 2.1911e-03, - 2DIAGNOSTIC, 28, -4.572758343278e-01, 5.599651793435e-04, 5.8109e-01, 2.2080e-03, - 2DIAGNOSTIC, 29, -4.575056141669e-01, 5.838869408342e-04, 5.8326e-01, 2.1691e-03, - 2DIAGNOSTIC, 30, -4.585118882422e-01, 5.748998325441e-04, 5.8555e-01, 2.2888e-03, - 2DIAGNOSTIC, 31, -4.653466314078e-01, 6.562227046613e-04, 5.8780e-01, 2.2490e-03, - 2DIAGNOSTIC, 32, -4.703219088106e-01, 7.699386291486e-04, 5.9098e-01, 3.1822e-03, - 2DIAGNOSTIC, 33, -4.727388528387e-01, 8.548899630865e-04, 5.9348e-01, 2.4998e-03, - 2DIAGNOSTIC, 34, -4.737578378928e-01, 8.909494293770e-04, 5.9564e-01, 2.1589e-03, - 2DIAGNOSTIC, 35, -4.748021726089e-01, 9.320510496917e-04, 5.9877e-01, 3.1312e-03, - 2DIAGNOSTIC, 36, -4.753825832961e-01, 9.395799773601e-04, 6.0431e-01, 5.5370e-03, - 2DIAGNOSTIC, 37, -4.758234767942e-01, 8.668487634880e-04, 6.0681e-01, 2.5051e-03, - 2DIAGNOSTIC, 38, -4.770918390421e-01, 7.426728643566e-04, 6.0971e-01, 2.8939e-03, - 2DIAGNOSTIC, 39, -4.776034295471e-01, 5.682622181069e-04, 6.1225e-01, 2.5461e-03, - 2DIAGNOSTIC, 40, -4.780155604884e-01, 3.700099495527e-04, 6.1548e-01, 3.2289e-03, - 2DIAGNOSTIC, 41, -4.783750490751e-01, 2.571768334236e-04, 6.1911e-01, 3.6330e-03, - 2DIAGNOSTIC, 42, -4.783262788297e-01, 1.994491273733e-04, 6.2139e-01, 2.2731e-03, - 2DIAGNOSTIC, 43, -4.784346979995e-01, 1.626256120491e-04, 6.2362e-01, 2.2311e-03, - 2DIAGNOSTIC, 44, -4.787301012551e-01, 1.306585565431e-04, 6.2591e-01, 2.2912e-03, - 2DIAGNOSTIC, 45, -4.789069108346e-01, 1.048474064633e-04, 6.2852e-01, 2.6121e-03, - 2DIAGNOSTIC, 46, -4.789016458094e-01, 7.823730113230e-05, 6.3083e-01, 2.3110e-03, - 2DIAGNOSTIC, 47, -4.788954525181e-01, 5.102489637370e-05, 6.3311e-01, 2.2759e-03, - 2DIAGNOSTIC, 48, -4.788824917117e-01, 3.663800732561e-05, 6.3533e-01, 2.2180e-03, - 2DIAGNOSTIC, 49, -4.789736641935e-01, 2.699507127089e-05, 6.3760e-01, 2.2750e-03, - 2DIAGNOSTIC, 50, -4.798308685958e-01, 3.099594543300e-05, 6.3991e-01, 2.3100e-03, - 2DIAGNOSTIC, 51, -4.808686420126e-01, 4.891851613942e-05, 6.4255e-01, 2.6369e-03, - 2DIAGNOSTIC, 52, -4.830420284158e-01, 8.692241568522e-05, 6.4516e-01, 2.6109e-03, - 2DIAGNOSTIC, 53, -4.936443589205e-01, 2.410668158801e-04, 6.4872e-01, 3.5620e-03, - 2DIAGNOSTIC, 54, -5.005903527812e-01, 4.465151315170e-04, 6.5669e-01, 7.9679e-03, - 2DIAGNOSTIC, 55, -5.005903180070e-01, 6.024031336471e-04, 6.5990e-01, 3.2098e-03, - 2DIAGNOSTIC, 56, -5.005904783610e-01, 6.969662027380e-04, 6.6285e-01, 2.9531e-03, - 2DIAGNOSTIC, 57, -5.005907495016e-01, 7.215526865393e-04, 6.6526e-01, 2.4109e-03, - 2DIAGNOSTIC, 58, -5.005912079278e-01, 6.738720615128e-04, 6.6755e-01, 2.2860e-03, - 2DIAGNOSTIC, 59, -5.005919829251e-01, 5.628787626513e-04, 6.6990e-01, 2.3508e-03, - 2DIAGNOSTIC, 60, -5.005932928782e-01, 4.122409634179e-04, 6.7228e-01, 2.3849e-03, - 2DIAGNOSTIC, 61, -5.005955064112e-01, 2.397669167348e-04, 6.7463e-01, 2.3460e-03, - 2DIAGNOSTIC, 62, -5.005992434097e-01, 6.981401299546e-05, 6.7699e-01, 2.3630e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.456318039861e-01, 1.797693134862e+308, 9.3144e-01, 2.5445e-01, - 2DIAGNOSTIC, 2, -3.470085277477e-01, 1.797693134862e+308, 9.4356e-01, 1.2115e-02, - 2DIAGNOSTIC, 3, -3.492643292934e-01, 1.797693134862e+308, 9.5560e-01, 1.2045e-02, - 2DIAGNOSTIC, 4, -3.520494983582e-01, 1.797693134862e+308, 9.6859e-01, 1.2988e-02, - 2DIAGNOSTIC, 5, -3.544404684401e-01, 1.797693134862e+308, 9.8045e-01, 1.1864e-02, - 2DIAGNOSTIC, 6, -3.570034114091e-01, 1.797693134862e+308, 9.9261e-01, 1.2158e-02, - 2DIAGNOSTIC, 7, -3.581083368874e-01, 1.797693134862e+308, 1.0045e+00, 1.1882e-02, - 2DIAGNOSTIC, 8, -3.608834472473e-01, 1.797693134862e+308, 1.0163e+00, 1.1827e-02, - 2DIAGNOSTIC, 9, -3.698223177839e-01, 1.797693134862e+308, 1.0317e+00, 1.5357e-02, - 2DIAGNOSTIC, 10, -3.754391137162e-01, 4.871582656092e-03, 1.0454e+00, 1.3720e-02, - 2DIAGNOSTIC, 11, -3.827103133367e-01, 5.341211284240e-03, 1.0573e+00, 1.1913e-02, - 2DIAGNOSTIC, 12, -4.248142126265e-01, 8.022775795079e-03, 1.0721e+00, 1.4776e-02, - 2DIAGNOSTIC, 13, -5.592256798984e-01, 1.705953362061e-02, 1.0961e+00, 2.3981e-02, - 2DIAGNOSTIC, 14, -5.714264227001e-01, 2.330491480289e-02, 1.1091e+00, 1.3061e-02, - 2DIAGNOSTIC, 15, -6.068623958300e-01, 2.799980476862e-02, 1.1242e+00, 1.5045e-02, - 2DIAGNOSTIC, 16, -6.158091440350e-01, 2.985202671804e-02, 1.1384e+00, 1.4263e-02, - 2DIAGNOSTIC, 17, -6.170473891687e-01, 2.877537635432e-02, 1.1507e+00, 1.2281e-02, - 2DIAGNOSTIC, 18, -6.174786624176e-01, 2.531474323449e-02, 1.1629e+00, 1.2212e-02, - 2DIAGNOSTIC, 19, -6.181329138701e-01, 2.036764897194e-02, 1.1789e+00, 1.6017e-02, - 2DIAGNOSTIC, 20, -6.183411763437e-01, 1.446286179442e-02, 1.1950e+00, 1.6008e-02, - 2DIAGNOSTIC, 21, -6.184778031617e-01, 8.200200718530e-03, 1.2072e+00, 1.2246e-02, - 2DIAGNOSTIC, 22, -6.191261345732e-01, 3.002612560700e-03, 1.2212e+00, 1.4040e-02, - 2DIAGNOSTIC, 23, -6.197878091375e-01, 1.586421817045e-03, 1.2392e+00, 1.7923e-02, - 2DIAGNOSTIC, 24, -6.198929924787e-01, 4.510810026400e-04, 1.2537e+00, 1.4570e-02, - 2DIAGNOSTIC, 25, -6.201519861797e-01, 2.081062224057e-04, 1.2662e+00, 1.2434e-02, - 2DIAGNOSTIC, 26, -6.201843623527e-01, 1.663110025899e-04, 1.2780e+00, 1.1840e-02, - 2DIAGNOSTIC, 27, -6.204322340830e-01, 1.439242991488e-04, 1.2897e+00, 1.1694e-02, - 2DIAGNOSTIC, 28, -6.210652570769e-01, 1.309179572729e-04, 1.3025e+00, 1.2773e-02, - 2DIAGNOSTIC, 29, -6.223286688685e-01, 1.434644051137e-04, 1.3219e+00, 1.9419e-02, - 2DIAGNOSTIC, 30, -6.223683942242e-01, 1.459608215645e-04, 1.3374e+00, 1.5459e-02, - 2DIAGNOSTIC, 31, -6.223840728154e-01, 1.375931761548e-04, 1.3508e+00, 1.3407e-02, - 2DIAGNOSTIC, 32, -6.223504685673e-01, 1.275128743862e-04, 1.3640e+00, 1.3291e-02, - 2DIAGNOSTIC, 33, -6.223386514613e-01, 1.167117171795e-04, 1.3782e+00, 1.4140e-02, - 2DIAGNOSTIC, 34, -6.223701674672e-01, 9.749867567457e-05, 1.3900e+00, 1.1812e-02, - 2DIAGNOSTIC, 35, -6.223778463699e-01, 7.463996852449e-05, 1.4038e+00, 1.3847e-02, - 2DIAGNOSTIC, 36, -6.223950918608e-01, 4.735140139204e-05, 1.4155e+00, 1.1636e-02, - 2DIAGNOSTIC, 37, -6.224671268123e-01, 2.197146298528e-05, 1.4271e+00, 1.1614e-02, - 2DIAGNOSTIC, 38, -6.225159352715e-01, 5.143269354864e-06, 1.4388e+00, 1.1667e-02, - 2DIAGNOSTIC, 39, -6.226846293271e-01, 8.261090377805e-06, 1.4543e+00, 1.5484e-02, - 2DIAGNOSTIC, 40, -6.227673221815e-01, 1.205449071794e-05, 1.4666e+00, 1.2372e-02, - 2DIAGNOSTIC, 41, -6.228286508351e-01, 1.557538138625e-05, 1.4784e+00, 1.1822e-02, - 2DIAGNOSTIC, 42, -6.230607900081e-01, 1.999057457080e-05, 1.4958e+00, 1.7335e-02, - 2DIAGNOSTIC, 43, -6.230977442246e-01, 2.257215958374e-05, 1.5111e+00, 1.5308e-02, - 2DIAGNOSTIC, 44, -6.231392456484e-01, 2.381672119992e-05, 1.5273e+00, 1.6195e-02, - 2DIAGNOSTIC, 45, -6.231172555332e-01, 2.266405269343e-05, 1.5390e+00, 1.1745e-02, - 2DIAGNOSTIC, 46, -6.232624662514e-01, 2.131065714565e-05, 1.5510e+00, 1.1941e-02, - 2DIAGNOSTIC, 47, -6.232932989657e-01, 1.912096046683e-05, 1.5629e+00, 1.1922e-02, - 2DIAGNOSTIC, 48, -6.233110726546e-01, 1.594859600209e-05, 1.5767e+00, 1.3849e-02, - 2DIAGNOSTIC, 49, -6.232916895001e-01, 1.306411466475e-05, 1.5887e+00, 1.1935e-02, - 2DIAGNOSTIC, 50, -6.232847992178e-01, 9.928598009544e-06, 1.6025e+00, 1.3798e-02, - 2DIAGNOSTIC, 51, -6.233065733360e-01, 6.800145311556e-06, 1.6150e+00, 1.2538e-02, - 2DIAGNOSTIC, 52, -6.233513154919e-01, 5.894801489277e-06, 1.6292e+00, 1.4163e-02, - 2DIAGNOSTIC, 53, -6.233227427311e-01, 4.602931635539e-06, 1.6431e+00, 1.3878e-02, - 2DIAGNOSTIC, 54, -6.233708595736e-01, 3.871784546621e-06, 1.6609e+00, 1.7863e-02, - 2DIAGNOSTIC, 55, -6.233566435903e-01, 2.489161207427e-06, 1.6752e+00, 1.4288e-02, - 2DIAGNOSTIC, 56, -6.233632940103e-01, 2.340770687816e-06, 1.6875e+00, 1.2304e-02, - 2DIAGNOSTIC, 57, -6.234054317412e-01, 2.667075835214e-06, 1.7015e+00, 1.3971e-02, - 2DIAGNOSTIC, 58, -6.234619457219e-01, 3.423406000767e-06, 1.7281e+00, 2.6592e-02, - 2DIAGNOSTIC, 59, -6.234784669389e-01, 3.852668226875e-06, 1.7422e+00, 1.4142e-02, - 2DIAGNOSTIC, 60, -6.234817767848e-01, 3.926468147692e-06, 1.7543e+00, 1.2064e-02, - 2DIAGNOSTIC, 61, -6.234700472580e-01, 3.758264832607e-06, 1.7662e+00, 1.1924e-02, - 2DIAGNOSTIC, 62, -6.234941126044e-01, 3.850013312684e-06, 1.7805e+00, 1.4302e-02, - 2DIAGNOSTIC, 63, -6.235001645756e-01, 3.417685622030e-06, 1.7914e+00, 1.0890e-02, - 2DIAGNOSTIC, 64, -6.234913453678e-01, 3.034395593522e-06, 1.8038e+00, 1.2389e-02, - 2DIAGNOSTIC, 65, -6.235308564216e-01, 2.631796225630e-06, 1.8178e+00, 1.4011e-02, - 2DIAGNOSTIC, 66, -6.235157123995e-01, 1.966991047379e-06, 1.8302e+00, 1.2417e-02, - 2DIAGNOSTIC, 67, -6.235003373183e-01, 1.375383692288e-06, 1.8412e+00, 1.1008e-02, - 2DIAGNOSTIC, 68, -6.234856650269e-01, 1.025024163107e-06, 1.8537e+00, 1.2495e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.213538348351e-01, 1.797693134862e+308, 2.2619e+00, 4.0820e-01, - 2DIAGNOSTIC, 2, -5.219626567147e-01, 1.797693134862e+308, 2.3359e+00, 7.4016e-02, - 2DIAGNOSTIC, 3, -5.224190649791e-01, 1.797693134862e+308, 2.4090e+00, 7.3085e-02, - 2DIAGNOSTIC, 4, -5.226178136985e-01, 1.797693134862e+308, 2.4836e+00, 7.4611e-02, - 2DIAGNOSTIC, 5, -5.227536430671e-01, 1.797693134862e+308, 2.5697e+00, 8.6033e-02, - 2DIAGNOSTIC, 6, -5.228856429995e-01, 1.797693134862e+308, 2.6483e+00, 7.8604e-02, - 2DIAGNOSTIC, 7, -5.230326216851e-01, 1.797693134862e+308, 2.7823e+00, 1.3404e-01, - 2DIAGNOSTIC, 8, -5.230660725844e-01, 1.797693134862e+308, 2.8778e+00, 9.5529e-02, - 2DIAGNOSTIC, 9, -5.230725642081e-01, 1.797693134862e+308, 2.9629e+00, 8.5053e-02, - 2DIAGNOSTIC, 10, -5.230788478288e-01, 1.861395078925e-04, 3.0625e+00, 9.9581e-02, - 2DIAGNOSTIC, 11, -5.231172806699e-01, 1.126566406167e-04, 3.1485e+00, 8.6037e-02, - 2DIAGNOSTIC, 12, -5.231480113471e-01, 7.000146635142e-05, 3.2359e+00, 8.7398e-02, - 2DIAGNOSTIC, 13, -5.231914934845e-01, 4.859865967992e-05, 3.3226e+00, 8.6729e-02, - 2DIAGNOSTIC, 14, -5.233620859679e-01, 4.038953400100e-05, 3.4234e+00, 1.0072e-01, - 2DIAGNOSTIC, 15, -5.236179506772e-01, 4.378699866701e-05, 3.5471e+00, 1.2373e-01, - 2DIAGNOSTIC, 16, -5.237109616045e-01, 5.027465385884e-05, 3.6451e+00, 9.8054e-02, - 2DIAGNOSTIC, 17, -5.237114815987e-01, 5.631972958354e-05, 3.7301e+00, 8.4936e-02, - 2DIAGNOSTIC, 18, -5.237376358353e-01, 5.859198546389e-05, 3.8155e+00, 8.5404e-02, - 2DIAGNOSTIC, 19, -5.237381121067e-01, 5.548889387508e-05, 3.9139e+00, 9.8468e-02, - 2DIAGNOSTIC, 20, -5.237297993882e-01, 4.750490640131e-05, 4.0246e+00, 1.1061e-01, - 2DIAGNOSTIC, 21, -5.237286460317e-01, 3.698447228727e-05, 4.1215e+00, 9.6918e-02, - 2DIAGNOSTIC, 22, -5.237272342236e-01, 2.494446990660e-05, 4.2134e+00, 9.1901e-02, - 2DIAGNOSTIC, 23, -5.237257427795e-01, 1.272615575688e-05, 4.2955e+00, 8.2088e-02, - 2DIAGNOSTIC, 24, -5.237243488117e-01, 4.151746029857e-06, 4.3905e+00, 9.5014e-02, - 2DIAGNOSTIC, 25, -5.237229260839e-01, 1.481945604606e-06, 4.4802e+00, 8.9680e-02, - Elapsed time (stage 0): 4.6206e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.702884539255e-01, 1.797693134862e+308, 1.9927e-01, 1.9927e-01, - 2DIAGNOSTIC, 2, -8.727531331608e-01, 1.797693134862e+308, 2.0071e-01, 1.4429e-03, - 2DIAGNOSTIC, 3, -8.747933174620e-01, 1.797693134862e+308, 2.0197e-01, 1.2600e-03, - 2DIAGNOSTIC, 4, -8.776664566063e-01, 1.797693134862e+308, 2.0320e-01, 1.2300e-03, - 2DIAGNOSTIC, 5, -8.818796574411e-01, 1.797693134862e+308, 2.0446e-01, 1.2531e-03, - 2DIAGNOSTIC, 6, -8.873196185825e-01, 1.797693134862e+308, 2.0566e-01, 1.2062e-03, - 2DIAGNOSTIC, 7, -8.982676589540e-01, 1.797693134862e+308, 2.0713e-01, 1.4691e-03, - 2DIAGNOSTIC, 8, -9.135281156685e-01, 1.797693134862e+308, 2.0867e-01, 1.5361e-03, - 2DIAGNOSTIC, 9, -9.201733805038e-01, 1.797693134862e+308, 2.1042e-01, 1.7509e-03, - 2DIAGNOSTIC, 10, -9.224682152724e-01, 4.187703640217e-03, 2.1217e-01, 1.7469e-03, - 2DIAGNOSTIC, 11, -9.265142190484e-01, 4.097296594996e-03, 2.1363e-01, 1.4620e-03, - 2DIAGNOSTIC, 12, -9.286281372922e-01, 3.771248272020e-03, 2.1516e-01, 1.5352e-03, - 2DIAGNOSTIC, 13, -9.306119602459e-01, 3.248900953028e-03, 2.1667e-01, 1.5039e-03, - 2DIAGNOSTIC, 14, -9.326709883988e-01, 2.619396496530e-03, 2.1812e-01, 1.4520e-03, - 2DIAGNOSTIC, 15, -9.337641110068e-01, 1.952050285557e-03, 2.1998e-01, 1.8561e-03, - 2DIAGNOSTIC, 16, -9.348165175236e-01, 1.317712011611e-03, 2.2215e-01, 2.1729e-03, - 2DIAGNOSTIC, 17, -9.413802209603e-01, 9.545352885179e-04, 2.2536e-01, 3.2079e-03, - 2DIAGNOSTIC, 18, -9.402247254349e-01, 7.846530094168e-04, 2.2721e-01, 1.8580e-03, - 2DIAGNOSTIC, 19, -9.411892733467e-01, 6.872111812286e-04, 2.2874e-01, 1.5240e-03, - 2DIAGNOSTIC, 20, -9.420403867580e-01, 5.847671191773e-04, 2.3041e-01, 1.6680e-03, - 2DIAGNOSTIC, 21, -9.433803503382e-01, 5.165602210162e-04, 2.3195e-01, 1.5450e-03, - 2DIAGNOSTIC, 22, -9.433842826670e-01, 4.346504353096e-04, 2.3335e-01, 1.4000e-03, - 2DIAGNOSTIC, 23, -9.451627685329e-01, 3.701282766360e-04, 2.3507e-01, 1.7200e-03, - 2DIAGNOSTIC, 24, -9.457431823630e-01, 3.112053128131e-04, 2.3657e-01, 1.4999e-03, - 2DIAGNOSTIC, 25, -9.458418260547e-01, 2.429455931248e-04, 2.3808e-01, 1.5101e-03, - 2DIAGNOSTIC, 26, -9.478598641022e-01, 1.916851402551e-04, 2.3949e-01, 1.4069e-03, - 2DIAGNOSTIC, 27, -9.492395978047e-01, 2.170989683026e-04, 2.4091e-01, 1.4241e-03, - 2DIAGNOSTIC, 28, -9.575711984904e-01, 2.986764338235e-04, 2.4305e-01, 2.1350e-03, - 2DIAGNOSTIC, 29, -9.577547973226e-01, 3.562685942207e-04, 2.4517e-01, 2.1260e-03, - 2DIAGNOSTIC, 30, -9.577732706200e-01, 3.862396156693e-04, 2.4663e-01, 1.4570e-03, - 2DIAGNOSTIC, 31, -9.575002385869e-01, 3.896295506620e-04, 2.4837e-01, 1.7371e-03, - 2DIAGNOSTIC, 32, -9.572466721024e-01, 3.527349786892e-04, 2.5039e-01, 2.0220e-03, - 2DIAGNOSTIC, 33, -9.579261621483e-01, 3.064570440442e-04, 2.5234e-01, 1.9491e-03, - 2DIAGNOSTIC, 34, -9.580734038497e-01, 2.403998543306e-04, 2.5390e-01, 1.5581e-03, - 2DIAGNOSTIC, 35, -9.585150846164e-01, 1.610399405838e-04, 2.5545e-01, 1.5540e-03, - 2DIAGNOSTIC, 36, -9.582862097710e-01, 8.677135878707e-05, 2.5701e-01, 1.5562e-03, - 2DIAGNOSTIC, 37, -9.603234640619e-01, 3.482817701660e-05, 2.5852e-01, 1.5152e-03, - 2DIAGNOSTIC, 38, -9.606561372609e-01, 5.137023883762e-05, 2.5993e-01, 1.4129e-03, - 2DIAGNOSTIC, 39, -9.608809545774e-01, 6.539156644987e-05, 2.6163e-01, 1.6952e-03, - 2DIAGNOSTIC, 40, -9.611061829291e-01, 7.469395828342e-05, 2.6309e-01, 1.4608e-03, - 2DIAGNOSTIC, 41, -9.620856961205e-01, 8.182708567824e-05, 2.6470e-01, 1.6131e-03, - 2DIAGNOSTIC, 42, -9.623563654889e-01, 8.051816384591e-05, 2.6711e-01, 2.4109e-03, - 2DIAGNOSTIC, 43, -9.624656048094e-01, 7.716512807780e-05, 2.6846e-01, 1.3480e-03, - 2DIAGNOSTIC, 44, -9.617832403074e-01, 6.317319847193e-05, 2.7001e-01, 1.5500e-03, - 2DIAGNOSTIC, 45, -9.620455466828e-01, 4.895728332719e-05, 2.7203e-01, 2.0170e-03, - 2DIAGNOSTIC, 46, -9.625059148585e-01, 3.174065137401e-05, 2.7348e-01, 1.4460e-03, - 2DIAGNOSTIC, 47, -9.614886705175e-01, 1.867000706541e-05, 2.7512e-01, 1.6432e-03, - 2DIAGNOSTIC, 48, -9.623931521060e-01, 1.256154968764e-05, 2.7756e-01, 2.4452e-03, - 2DIAGNOSTIC, 49, -9.625254406826e-01, 7.709939870988e-06, 2.7881e-01, 1.2462e-03, - 2DIAGNOSTIC, 50, -9.625795529211e-01, 3.853696847581e-06, 2.8020e-01, 1.3871e-03, - 2DIAGNOSTIC, 51, -9.626476057856e-01, 6.010147179297e-06, 2.8152e-01, 1.3220e-03, - 2DIAGNOSTIC, 52, -9.619650649637e-01, 5.206850618993e-06, 2.8329e-01, 1.7741e-03, - 2DIAGNOSTIC, 53, -9.620557566661e-01, 5.359977540375e-06, 2.8478e-01, 1.4849e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.509738087787e-01, 1.797693134862e+308, 4.9710e-01, 2.1233e-01, - 2DIAGNOSTIC, 2, -8.503255424356e-01, 1.797693134862e+308, 4.9925e-01, 2.1410e-03, - 2DIAGNOSTIC, 3, -8.512510415917e-01, 1.797693134862e+308, 5.0126e-01, 2.0142e-03, - 2DIAGNOSTIC, 4, -8.526028028631e-01, 1.797693134862e+308, 5.0357e-01, 2.3129e-03, - 2DIAGNOSTIC, 5, -8.536014266762e-01, 1.797693134862e+308, 5.0594e-01, 2.3711e-03, - 2DIAGNOSTIC, 6, -8.541838255349e-01, 1.797693134862e+308, 5.0826e-01, 2.3122e-03, - 2DIAGNOSTIC, 7, -8.547458866352e-01, 1.797693134862e+308, 5.1055e-01, 2.2900e-03, - 2DIAGNOSTIC, 8, -8.553630414589e-01, 1.797693134862e+308, 5.1259e-01, 2.0480e-03, - 2DIAGNOSTIC, 9, -8.581448872747e-01, 1.797693134862e+308, 5.1644e-01, 3.8419e-03, - 2DIAGNOSTIC, 10, -8.583428227807e-01, 6.083628799086e-04, 5.1867e-01, 2.2371e-03, - 2DIAGNOSTIC, 11, -8.583651520476e-01, 5.787513115301e-04, 5.2124e-01, 2.5630e-03, - 2DIAGNOSTIC, 12, -8.581765557371e-01, 4.803869683354e-04, 5.2388e-01, 2.6429e-03, - 2DIAGNOSTIC, 13, -8.580940200483e-01, 3.748495184964e-04, 5.2655e-01, 2.6679e-03, - 2DIAGNOSTIC, 14, -8.580262764304e-01, 2.796373409023e-04, 5.2883e-01, 2.2881e-03, - 2DIAGNOSTIC, 15, -8.580388403954e-01, 1.938920365146e-04, 5.3107e-01, 2.2399e-03, - 2DIAGNOSTIC, 16, -8.581833895232e-01, 1.171081622601e-04, 5.3457e-01, 3.4950e-03, - 2DIAGNOSTIC, 17, -8.582735935785e-01, 5.187181013985e-05, 5.3731e-01, 2.7370e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.090908638844e-01, 1.797693134862e+308, 7.8071e-01, 2.4340e-01, - 2DIAGNOSTIC, 2, -7.113499138498e-01, 1.797693134862e+308, 7.9408e-01, 1.3370e-02, - 2DIAGNOSTIC, 3, -7.139677347702e-01, 1.797693134862e+308, 8.0890e-01, 1.4821e-02, - 2DIAGNOSTIC, 4, -7.171281409480e-01, 1.797693134862e+308, 8.2261e-01, 1.3706e-02, - 2DIAGNOSTIC, 5, -7.193452560667e-01, 1.797693134862e+308, 8.3592e-01, 1.3310e-02, - 2DIAGNOSTIC, 6, -7.211095553776e-01, 1.797693134862e+308, 8.5028e-01, 1.4365e-02, - 2DIAGNOSTIC, 7, -7.234456157691e-01, 1.797693134862e+308, 8.6382e-01, 1.3540e-02, - 2DIAGNOSTIC, 8, -7.265504122601e-01, 1.797693134862e+308, 8.8337e-01, 1.9543e-02, - 2DIAGNOSTIC, 9, -7.270347877708e-01, 1.797693134862e+308, 8.9737e-01, 1.4000e-02, - 2DIAGNOSTIC, 10, -7.279085580255e-01, 1.764285056461e-03, 9.1110e-01, 1.3739e-02, - 2DIAGNOSTIC, 11, -7.290658588713e-01, 1.458723626902e-03, 9.3231e-01, 2.1202e-02, - 2DIAGNOSTIC, 12, -7.293926967418e-01, 1.156701849209e-03, 9.4560e-01, 1.3293e-02, - 2DIAGNOSTIC, 13, -7.294718279580e-01, 8.767859141742e-04, 9.5970e-01, 1.4104e-02, - 2DIAGNOSTIC, 14, -7.296708085052e-01, 6.520867774527e-04, 9.7314e-01, 1.3440e-02, - 2DIAGNOSTIC, 15, -7.302402001011e-01, 4.715546657563e-04, 9.8718e-01, 1.4035e-02, - 2DIAGNOSTIC, 16, -7.321752796782e-01, 3.601224183275e-04, 1.0087e+00, 2.1516e-02, - 2DIAGNOSTIC, 17, -7.324449926798e-01, 2.862892767415e-04, 1.0302e+00, 2.1468e-02, - 2DIAGNOSTIC, 18, -7.324668353229e-01, 2.634370250524e-04, 1.0439e+00, 1.3707e-02, - 2DIAGNOSTIC, 19, -7.324986104689e-01, 2.298981030474e-04, 1.0599e+00, 1.6036e-02, - 2DIAGNOSTIC, 20, -7.324897560824e-01, 1.946763183861e-04, 1.0786e+00, 1.8726e-02, - 2DIAGNOSTIC, 21, -7.324980175700e-01, 1.658549030278e-04, 1.0934e+00, 1.4788e-02, - 2DIAGNOSTIC, 22, -7.324843591162e-01, 1.298724514125e-04, 1.1083e+00, 1.4880e-02, - 2DIAGNOSTIC, 23, -7.324701963374e-01, 8.667817492158e-05, 1.1232e+00, 1.4942e-02, - 2DIAGNOSTIC, 24, -7.324580847565e-01, 4.234960689990e-05, 1.1381e+00, 1.4823e-02, - 2DIAGNOSTIC, 25, -7.324427447230e-01, 5.599354395348e-06, 1.1514e+00, 1.3361e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.095459018281e-01, 1.797693134862e+308, 1.5746e+00, 4.2315e-01, - 2DIAGNOSTIC, 2, -6.101422841358e-01, 1.797693134862e+308, 1.6557e+00, 8.1145e-02, - 2DIAGNOSTIC, 3, -6.105686459827e-01, 1.797693134862e+308, 1.7361e+00, 8.0353e-02, - 2DIAGNOSTIC, 4, -6.108662516475e-01, 1.797693134862e+308, 1.8178e+00, 8.1701e-02, - 2DIAGNOSTIC, 5, -6.111453448113e-01, 1.797693134862e+308, 1.9046e+00, 8.6858e-02, - 2DIAGNOSTIC, 6, -6.112928859139e-01, 1.797693134862e+308, 2.0350e+00, 1.3039e-01, - 2DIAGNOSTIC, 7, -6.113837802851e-01, 1.797693134862e+308, 2.1487e+00, 1.1366e-01, - 2DIAGNOSTIC, 8, -6.113705221646e-01, 1.797693134862e+308, 2.2523e+00, 1.0356e-01, - 2DIAGNOSTIC, 9, -6.113869920180e-01, 1.797693134862e+308, 2.3561e+00, 1.0381e-01, - 2DIAGNOSTIC, 10, -6.113910463613e-01, 1.781761549537e-04, 2.4606e+00, 1.0451e-01, - 2DIAGNOSTIC, 11, -6.113830828345e-01, 1.062932421830e-04, 2.5629e+00, 1.0238e-01, - 2DIAGNOSTIC, 12, -6.113860483047e-01, 6.014454422014e-05, 2.7059e+00, 1.4295e-01, - 2DIAGNOSTIC, 13, -6.113829196195e-01, 3.094308304889e-05, 2.7875e+00, 8.1554e-02, - 2DIAGNOSTIC, 14, -6.113804012479e-01, 1.296543939609e-05, 2.8830e+00, 9.5578e-02, - 2DIAGNOSTIC, 15, -6.113764664812e-01, 4.837330876376e-06, 2.9839e+00, 1.0087e-01, - 2DIAGNOSTIC, 16, -6.113762727441e-01, 1.691247686314e-06, 3.0796e+00, 9.5654e-02, - 2DIAGNOSTIC, 17, -6.113753358077e-01, 1.419038640517e-06, 3.1826e+00, 1.0306e-01, - Elapsed time (stage 1): 3.2971e+00 - - -Total elapsed time: 7.9216e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:13:36 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:13:37 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x556c6e8ae4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 50.8095, -129.488] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556c6e8b3fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f87e3a7f010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x556c6e8af850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 50.8095, -129.488] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556c6e8acf30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f87e03c0010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x556c6e8c6b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 50.8095, -129.488] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556c6e8b3550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f87dcd01010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x556c6e8cbd70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 50.8095, -129.488] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556c6e8c9c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f87d9642010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x556c6e8cdf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 50.8095, -129.488] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556c6e8cc3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f87d5f83010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x556c6e8ce540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [106.551, 50.8095, -129.488] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x556c6e8ce4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f87d28c4010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.656342344509e-01, 1.797693134862e+308, 1.9282e-01, 1.9282e-01, - 2DIAGNOSTIC, 2, -6.688980185612e-01, 1.797693134862e+308, 1.9482e-01, 2.0039e-03, - 2DIAGNOSTIC, 3, -6.734517146269e-01, 1.797693134862e+308, 1.9676e-01, 1.9360e-03, - 2DIAGNOSTIC, 4, -6.791009742915e-01, 1.797693134862e+308, 1.9869e-01, 1.9310e-03, - 2DIAGNOSTIC, 5, -6.844172894482e-01, 1.797693134862e+308, 2.0052e-01, 1.8280e-03, - 2DIAGNOSTIC, 6, -6.883162348612e-01, 1.797693134862e+308, 2.0224e-01, 1.7281e-03, - 2DIAGNOSTIC, 7, -6.894476426309e-01, 1.797693134862e+308, 2.0425e-01, 2.0061e-03, - 2DIAGNOSTIC, 8, -6.896726022771e-01, 1.797693134862e+308, 2.0652e-01, 2.2719e-03, - 2DIAGNOSTIC, 9, -6.904228851150e-01, 1.797693134862e+308, 2.0830e-01, 1.7800e-03, - 2DIAGNOSTIC, 10, -6.910277421445e-01, 2.547648321610e-03, 2.1054e-01, 2.2430e-03, - 2DIAGNOSTIC, 11, -6.925756822791e-01, 1.880060653872e-03, 2.1696e-01, 6.4189e-03, - 2DIAGNOSTIC, 12, -6.925755606306e-01, 1.268877085250e-03, 2.1896e-01, 1.9920e-03, - 2DIAGNOSTIC, 13, -6.925757336395e-01, 7.835417816510e-04, 2.2099e-01, 2.0332e-03, - 2DIAGNOSTIC, 14, -6.925760261303e-01, 4.625390663122e-04, 2.2296e-01, 1.9720e-03, - 2DIAGNOSTIC, 15, -6.925765204343e-01, 2.866018850104e-04, 2.2494e-01, 1.9789e-03, - 2DIAGNOSTIC, 16, -6.925773554572e-01, 2.065927024508e-04, 2.2692e-01, 1.9779e-03, - 2DIAGNOSTIC, 17, -6.925787627134e-01, 1.450112451388e-04, 2.2891e-01, 1.9939e-03, - 2DIAGNOSTIC, 18, -6.925811313557e-01, 8.259498089378e-05, 2.3088e-01, 1.9720e-03, - 2DIAGNOSTIC, 19, -6.925851170237e-01, 3.576666275085e-05, 2.3291e-01, 2.0280e-03, - 2DIAGNOSTIC, 20, -6.925918026083e-01, 2.216210442739e-06, 2.3515e-01, 2.2359e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.755244996645e-01, 1.797693134862e+308, 4.5288e-01, 2.1773e-01, - 2DIAGNOSTIC, 2, -5.770755331125e-01, 1.797693134862e+308, 4.6559e-01, 1.2718e-02, - 2DIAGNOSTIC, 3, -5.779708917525e-01, 1.797693134862e+308, 4.7823e-01, 1.2636e-02, - 2DIAGNOSTIC, 4, -5.783548343656e-01, 1.797693134862e+308, 4.9043e-01, 1.2197e-02, - 2DIAGNOSTIC, 5, -5.786780683421e-01, 1.797693134862e+308, 5.0294e-01, 1.2518e-02, - 2DIAGNOSTIC, 6, -5.789128851198e-01, 1.797693134862e+308, 5.1524e-01, 1.2296e-02, - 2DIAGNOSTIC, 7, -5.793332845731e-01, 1.797693134862e+308, 5.3014e-01, 1.4903e-02, - 2DIAGNOSTIC, 8, -5.793558503640e-01, 1.797693134862e+308, 5.5311e-01, 2.2962e-02, - 2DIAGNOSTIC, 9, -5.793285230526e-01, 1.797693134862e+308, 5.6604e-01, 1.2931e-02, - 2DIAGNOSTIC, 10, -5.793893493651e-01, 3.619387602824e-04, 5.7917e-01, 1.3136e-02, - 2DIAGNOSTIC, 11, -5.795519424253e-01, 2.166095021071e-04, 5.9225e-01, 1.3077e-02, - 2DIAGNOSTIC, 12, -5.796034942004e-01, 1.408286994744e-04, 6.0539e-01, 1.3145e-02, - 2DIAGNOSTIC, 13, -5.796724688323e-01, 1.005445666177e-04, 6.2429e-01, 1.8891e-02, - 2DIAGNOSTIC, 14, -5.796767343955e-01, 7.079851297580e-05, 6.4072e-01, 1.6438e-02, - 2DIAGNOSTIC, 15, -5.796723449683e-01, 4.916492927562e-05, 6.5546e-01, 1.4740e-02, - 2DIAGNOSTIC, 16, -5.796642138758e-01, 3.244967230707e-05, 6.6973e-01, 1.4263e-02, - 2DIAGNOSTIC, 17, -5.796570889377e-01, 2.679198638407e-05, 6.8388e-01, 1.4150e-02, - 2DIAGNOSTIC, 18, -5.796474118553e-01, 1.989061456233e-05, 6.9626e-01, 1.2382e-02, - 2DIAGNOSTIC, 19, -5.796404420190e-01, 1.117200719535e-05, 7.1032e-01, 1.4061e-02, - 2DIAGNOSTIC, 20, -5.796471356739e-01, 4.030722675637e-06, 7.2676e-01, 1.6439e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.829457709978e-01, 1.797693134862e+308, 1.0852e+00, 3.5842e-01, - 2DIAGNOSTIC, 2, -4.834573662352e-01, 1.797693134862e+308, 1.1781e+00, 9.2950e-02, - 2DIAGNOSTIC, 3, -4.837660767799e-01, 1.797693134862e+308, 1.2732e+00, 9.5030e-02, - 2DIAGNOSTIC, 4, -4.839368370161e-01, 1.797693134862e+308, 1.3663e+00, 9.3114e-02, - 2DIAGNOSTIC, 5, -4.841456658844e-01, 1.797693134862e+308, 1.4577e+00, 9.1477e-02, - 2DIAGNOSTIC, 6, -4.843839725538e-01, 1.797693134862e+308, 1.5524e+00, 9.4606e-02, - 2DIAGNOSTIC, 7, -4.846882026486e-01, 1.797693134862e+308, 1.7252e+00, 1.7286e-01, - 2DIAGNOSTIC, 8, -4.847065263947e-01, 1.797693134862e+308, 1.8563e+00, 1.3110e-01, - 2DIAGNOSTIC, 9, -4.847076611425e-01, 1.797693134862e+308, 1.9736e+00, 1.1728e-01, - 2DIAGNOSTIC, 10, -4.847073908616e-01, 2.323788452965e-04, 2.0795e+00, 1.0588e-01, - 2DIAGNOSTIC, 11, -4.847074631004e-01, 1.590148382158e-04, 2.2241e+00, 1.4460e-01, - 2DIAGNOSTIC, 12, -4.847054792406e-01, 1.083549180333e-04, 2.3161e+00, 9.1995e-02, - 2DIAGNOSTIC, 13, -4.847040111281e-01, 6.982760162658e-05, 2.4220e+00, 1.0595e-01, - 2DIAGNOSTIC, 14, -4.847034506071e-01, 3.789810826833e-05, 2.5152e+00, 9.3238e-02, - 2DIAGNOSTIC, 15, -4.847034219083e-01, 1.503195729551e-05, 2.6474e+00, 1.3219e-01, - 2DIAGNOSTIC, 16, -4.847037482556e-01, 2.281904511930e-06, 2.7529e+00, 1.0550e-01, - 2DIAGNOSTIC, 17, -4.847027469341e-01, 1.454810887931e-06, 2.8585e+00, 1.0557e-01, - 2DIAGNOSTIC, 18, -4.847018159592e-01, 1.326234541542e-06, 2.9526e+00, 9.4110e-02, - 2DIAGNOSTIC, 19, -4.847011998681e-01, 1.268532218809e-06, 3.0591e+00, 1.0649e-01, - 2DIAGNOSTIC, 20, -4.847018730925e-01, 1.264496817061e-06, 3.1513e+00, 9.2168e-02, - 2DIAGNOSTIC, 21, -4.847016123899e-01, 1.285659749078e-06, 3.2441e+00, 9.2800e-02, - 2DIAGNOSTIC, 22, -4.847034798537e-01, 1.324847355592e-06, 3.3510e+00, 1.0689e-01, - 2DIAGNOSTIC, 23, -4.847039132302e-01, 1.345559696608e-06, 3.4699e+00, 1.1890e-01, - 2DIAGNOSTIC, 24, -4.847032311508e-01, 1.337888438070e-06, 3.5774e+00, 1.0754e-01, - 2DIAGNOSTIC, 25, -4.847022960898e-01, 1.307351876298e-06, 3.6709e+00, 9.3536e-02, - 2DIAGNOSTIC, 26, -4.847016702915e-01, 1.269805795991e-06, 3.7623e+00, 9.1388e-02, - 2DIAGNOSTIC, 27, -4.846997960682e-01, 1.168115957587e-06, 3.8687e+00, 1.0639e-01, - 2DIAGNOSTIC, 28, -4.847005774565e-01, 1.072401441871e-06, 3.9632e+00, 9.4507e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.183856674310e-01, 1.797693134862e+308, 5.1664e+00, 1.2032e+00, - 2DIAGNOSTIC, 2, -4.185638694997e-01, 1.797693134862e+308, 5.7074e+00, 5.4097e-01, - 2DIAGNOSTIC, 3, -4.186400916961e-01, 1.797693134862e+308, 6.2552e+00, 5.4783e-01, - 2DIAGNOSTIC, 4, -4.187328826197e-01, 1.797693134862e+308, 7.3374e+00, 1.0822e+00, - 2DIAGNOSTIC, 5, -4.187332125143e-01, 1.797693134862e+308, 7.9859e+00, 6.4846e-01, - 2DIAGNOSTIC, 6, -4.187313816548e-01, 1.797693134862e+308, 8.8193e+00, 8.3348e-01, - 2DIAGNOSTIC, 7, -4.187314532471e-01, 1.797693134862e+308, 9.3518e+00, 5.3243e-01, - 2DIAGNOSTIC, 8, -4.187310510569e-01, 1.797693134862e+308, 9.9708e+00, 6.1905e-01, - 2DIAGNOSTIC, 9, -4.187308444585e-01, 1.797693134862e+308, 1.0713e+01, 7.4233e-01, - 2DIAGNOSTIC, 10, -4.187306359341e-01, 4.077106506553e-05, 1.1255e+01, 5.4146e-01, - 2DIAGNOSTIC, 11, -4.187306468963e-01, 1.791532625144e-05, 1.1976e+01, 7.2101e-01, - 2DIAGNOSTIC, 12, -4.187304518178e-01, 7.531911662778e-06, 1.2558e+01, 5.8267e-01, - 2DIAGNOSTIC, 13, -4.187300800339e-01, 2.126280428186e-06, 1.3201e+01, 6.4255e-01, - 2DIAGNOSTIC, 14, -4.187301406134e-01, 2.023376817331e-06, 1.3730e+01, 5.2947e-01, - 2DIAGNOSTIC, 15, -4.187300382427e-01, 1.969108702746e-06, 1.4245e+01, 5.1470e-01, - 2DIAGNOSTIC, 16, -4.187299200591e-01, 1.852371049271e-06, 1.4761e+01, 5.1557e-01, - 2DIAGNOSTIC, 17, -4.187296747893e-01, 1.755483364216e-06, 1.5288e+01, 5.2788e-01, - 2DIAGNOSTIC, 18, -4.187296100118e-01, 1.662992507707e-06, 1.5825e+01, 5.3655e-01, - 2DIAGNOSTIC, 19, -4.187297487356e-01, 1.587507799945e-06, 1.6436e+01, 6.1063e-01, - 2DIAGNOSTIC, 20, -4.187297996319e-01, 1.521762837554e-06, 1.7107e+01, 6.7099e-01, - 2DIAGNOSTIC, 21, -4.187295845565e-01, 1.462243208905e-06, 1.7650e+01, 5.4340e-01, - 2DIAGNOSTIC, 22, -4.187294238588e-01, 1.402797868442e-06, 1.8183e+01, 5.3323e-01, - 2DIAGNOSTIC, 23, -4.187296488917e-01, 1.348215571753e-06, 1.8843e+01, 6.5929e-01, - 2DIAGNOSTIC, 24, -4.187297385294e-01, 1.305231740661e-06, 1.9466e+01, 6.2307e-01, - 2DIAGNOSTIC, 25, -4.187296493978e-01, 1.262290158843e-06, 2.0083e+01, 6.1733e-01, - 2DIAGNOSTIC, 26, -4.187295255166e-01, 1.217808064946e-06, 2.0609e+01, 5.2609e-01, - 2DIAGNOSTIC, 27, -4.187293955465e-01, 1.168001697679e-06, 2.1079e+01, 4.7000e-01, - 2DIAGNOSTIC, 28, -4.187291303529e-01, 1.114483230889e-06, 2.1568e+01, 4.8895e-01, - 2DIAGNOSTIC, 29, -4.187290319139e-01, 1.067532774505e-06, 2.2051e+01, 4.8297e-01, - 2DIAGNOSTIC, 30, -4.187291138581e-01, 1.029658350353e-06, 2.2567e+01, 5.1633e-01, - Elapsed time (stage 0): 2.2934e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.853700423729e-01, 1.797693134862e+308, 1.7567e-01, 1.7567e-01, - 2DIAGNOSTIC, 2, -6.873425194087e-01, 1.797693134862e+308, 1.7753e-01, 1.8609e-03, - 2DIAGNOSTIC, 3, -6.900746674279e-01, 1.797693134862e+308, 1.7937e-01, 1.8420e-03, - 2DIAGNOSTIC, 4, -6.934242109542e-01, 1.797693134862e+308, 1.8119e-01, 1.8191e-03, - 2DIAGNOSTIC, 5, -6.965859675016e-01, 1.797693134862e+308, 1.8305e-01, 1.8539e-03, - 2DIAGNOSTIC, 6, -6.986723193726e-01, 1.797693134862e+308, 1.8518e-01, 2.1381e-03, - 2DIAGNOSTIC, 7, -6.996796954565e-01, 1.797693134862e+308, 1.8918e-01, 3.9980e-03, - 2DIAGNOSTIC, 8, -6.996842437472e-01, 1.797693134862e+308, 1.9110e-01, 1.9219e-03, - 2DIAGNOSTIC, 9, -6.997024142343e-01, 1.797693134862e+308, 1.9298e-01, 1.8761e-03, - 2DIAGNOSTIC, 10, -6.997317891997e-01, 1.441418641895e-03, 1.9507e-01, 2.0919e-03, - 2DIAGNOSTIC, 11, -6.997752977606e-01, 1.001909331989e-03, 1.9713e-01, 2.0549e-03, - 2DIAGNOSTIC, 12, -6.998353407473e-01, 6.153152881236e-04, 1.9926e-01, 2.1279e-03, - 2DIAGNOSTIC, 13, -6.999124653587e-01, 3.205482630612e-04, 2.0137e-01, 2.1129e-03, - 2DIAGNOSTIC, 14, -6.999939917780e-01, 1.377729976414e-04, 2.0350e-01, 2.1291e-03, - 2DIAGNOSTIC, 15, -7.000735350854e-01, 5.394871227776e-05, 2.0562e-01, 2.1210e-03, - 2DIAGNOSTIC, 16, -7.001630108052e-01, 3.060583864095e-05, 2.0775e-01, 2.1348e-03, - 2DIAGNOSTIC, 17, -7.002770432102e-01, 3.425527834354e-05, 2.0986e-01, 2.1100e-03, - 2DIAGNOSTIC, 18, -7.004606957606e-01, 3.871910563692e-05, 2.1200e-01, 2.1350e-03, - 2DIAGNOSTIC, 19, -7.007394092886e-01, 4.557479215995e-05, 2.1440e-01, 2.3968e-03, - 2DIAGNOSTIC, 20, -7.008227701699e-01, 4.985520309700e-05, 2.1786e-01, 3.4630e-03, - 2DIAGNOSTIC, 21, -7.008648950593e-01, 5.093629488839e-05, 2.2005e-01, 2.1892e-03, - 2DIAGNOSTIC, 22, -7.008750910860e-01, 4.863290496838e-05, 2.2245e-01, 2.4040e-03, - 2DIAGNOSTIC, 23, -7.008892188989e-01, 4.368069517422e-05, 2.2509e-01, 2.6400e-03, - 2DIAGNOSTIC, 24, -7.009177346529e-01, 3.696671734981e-05, 2.2723e-01, 2.1372e-03, - 2DIAGNOSTIC, 25, -7.009319545408e-01, 2.895164298185e-05, 2.2935e-01, 2.1260e-03, - 2DIAGNOSTIC, 26, -7.009571239511e-01, 2.078791658627e-05, 2.3196e-01, 2.6031e-03, - 2DIAGNOSTIC, 27, -7.009832920269e-01, 1.348648808867e-05, 2.3432e-01, 2.3580e-03, - 2DIAGNOSTIC, 28, -7.009918553636e-01, 8.240718057877e-06, 2.3642e-01, 2.1000e-03, - 2DIAGNOSTIC, 29, -7.009988159128e-01, 6.669161923115e-06, 2.3881e-01, 2.3978e-03, - 2DIAGNOSTIC, 30, -7.010036359579e-01, 5.858741824488e-06, 2.4122e-01, 2.4040e-03, - 2DIAGNOSTIC, 31, -7.011203402523e-01, 6.728690987570e-06, 2.4412e-01, 2.9058e-03, - 2DIAGNOSTIC, 32, -7.010092271957e-01, 5.676404555691e-06, 2.4728e-01, 3.1550e-03, - 2DIAGNOSTIC, 33, -7.010093687500e-01, 4.471338796122e-06, 2.5019e-01, 2.9120e-03, - 2DIAGNOSTIC, 34, -7.010093842293e-01, 3.354424016114e-06, 2.5368e-01, 3.4940e-03, - 2DIAGNOSTIC, 35, -7.010093854684e-01, 2.206666413228e-06, 2.5720e-01, 3.5150e-03, - 2DIAGNOSTIC, 36, -7.010093855616e-01, 1.260207285091e-06, 2.6039e-01, 3.1941e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.751051888776e-01, 1.797693134862e+308, 4.6313e-01, 2.0273e-01, - 2DIAGNOSTIC, 2, -5.760111891729e-01, 1.797693134862e+308, 4.7698e-01, 1.3849e-02, - 2DIAGNOSTIC, 3, -5.770073117490e-01, 1.797693134862e+308, 4.9080e-01, 1.3823e-02, - 2DIAGNOSTIC, 4, -5.777740373860e-01, 1.797693134862e+308, 5.0536e-01, 1.4560e-02, - 2DIAGNOSTIC, 5, -5.783167433296e-01, 1.797693134862e+308, 5.2136e-01, 1.6003e-02, - 2DIAGNOSTIC, 6, -5.789828724341e-01, 1.797693134862e+308, 5.3751e-01, 1.6149e-02, - 2DIAGNOSTIC, 7, -5.790958000325e-01, 1.797693134862e+308, 5.5335e-01, 1.5839e-02, - 2DIAGNOSTIC, 8, -5.791607600683e-01, 1.797693134862e+308, 5.6893e-01, 1.5576e-02, - 2DIAGNOSTIC, 9, -5.791877244360e-01, 1.797693134862e+308, 5.8306e-01, 1.4132e-02, - 2DIAGNOSTIC, 10, -5.791907280988e-01, 4.506381296331e-04, 5.9605e-01, 1.2988e-02, - 2DIAGNOSTIC, 11, -5.792685781345e-01, 2.965328627813e-04, 6.0973e-01, 1.3685e-02, - 2DIAGNOSTIC, 12, -5.793163990354e-01, 1.802132299685e-04, 6.2557e-01, 1.5840e-02, - 2DIAGNOSTIC, 13, -5.795618469615e-01, 1.124763427621e-04, 6.4909e-01, 2.3519e-02, - 2DIAGNOSTIC, 14, -5.795990012177e-01, 7.225204649090e-05, 6.6309e-01, 1.4003e-02, - 2DIAGNOSTIC, 15, -5.796087141647e-01, 4.863414893119e-05, 6.7891e-01, 1.5819e-02, - 2DIAGNOSTIC, 16, -5.796097650230e-01, 4.421372405904e-05, 6.9655e-01, 1.7637e-02, - 2DIAGNOSTIC, 17, -5.796006789684e-01, 3.934656605667e-05, 7.1321e-01, 1.6661e-02, - 2DIAGNOSTIC, 18, -5.795754520693e-01, 3.254857096170e-05, 7.2758e-01, 1.4366e-02, - 2DIAGNOSTIC, 19, -5.795791674468e-01, 2.442575168741e-05, 7.4182e-01, 1.4246e-02, - 2DIAGNOSTIC, 20, -5.795843711190e-01, 1.524047421241e-05, 7.5992e-01, 1.8095e-02, - 2DIAGNOSTIC, 21, -5.795860137989e-01, 7.557422852328e-06, 7.7417e-01, 1.4254e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.833824838238e-01, 1.797693134862e+308, 1.1517e+00, 3.7751e-01, - 2DIAGNOSTIC, 2, -4.841662331971e-01, 1.797693134862e+308, 1.2538e+00, 1.0212e-01, - 2DIAGNOSTIC, 3, -4.847885136703e-01, 1.797693134862e+308, 1.3556e+00, 1.0180e-01, - 2DIAGNOSTIC, 4, -4.850544011462e-01, 1.797693134862e+308, 1.4582e+00, 1.0260e-01, - 2DIAGNOSTIC, 5, -4.851422958444e-01, 1.797693134862e+308, 1.5616e+00, 1.0343e-01, - 2DIAGNOSTIC, 6, -4.852527363913e-01, 1.797693134862e+308, 1.6624e+00, 1.0073e-01, - 2DIAGNOSTIC, 7, -4.854487177065e-01, 1.797693134862e+308, 1.8060e+00, 1.4367e-01, - 2DIAGNOSTIC, 8, -4.854642641275e-01, 1.797693134862e+308, 1.9092e+00, 1.0315e-01, - 2DIAGNOSTIC, 9, -4.854802750339e-01, 1.797693134862e+308, 2.0256e+00, 1.1645e-01, - 2DIAGNOSTIC, 10, -4.855293825090e-01, 2.359322041060e-04, 2.1277e+00, 1.0210e-01, - 2DIAGNOSTIC, 11, -4.855645980005e-01, 1.375215958675e-04, 2.2452e+00, 1.1747e-01, - 2DIAGNOSTIC, 12, -4.855685076161e-01, 8.108097381530e-05, 2.4191e+00, 1.7390e-01, - 2DIAGNOSTIC, 13, -4.855731511884e-01, 5.429217756921e-05, 2.5484e+00, 1.2931e-01, - 2DIAGNOSTIC, 14, -4.855740660333e-01, 3.787253238390e-05, 2.6632e+00, 1.1481e-01, - 2DIAGNOSTIC, 15, -4.855745273245e-01, 2.378708859385e-05, 2.7786e+00, 1.1533e-01, - 2DIAGNOSTIC, 16, -4.855740229723e-01, 1.328619924963e-05, 2.8827e+00, 1.0419e-01, - 2DIAGNOSTIC, 17, -4.855739652442e-01, 9.744913887881e-06, 2.9996e+00, 1.1689e-01, - 2DIAGNOSTIC, 18, -4.855736704224e-01, 6.386409767634e-06, 3.1019e+00, 1.0228e-01, - 2DIAGNOSTIC, 19, -4.855737759004e-01, 3.421104982505e-06, 3.2190e+00, 1.1711e-01, - 2DIAGNOSTIC, 20, -4.855745891804e-01, 2.025683001700e-06, 3.3361e+00, 1.1703e-01, - 2DIAGNOSTIC, 21, -4.855758237844e-01, 1.737620050228e-06, 3.5081e+00, 1.7207e-01, - 2DIAGNOSTIC, 22, -4.855755546693e-01, 1.548367594480e-06, 3.6272e+00, 1.1911e-01, - 2DIAGNOSTIC, 23, -4.855756637626e-01, 1.487381572685e-06, 3.7304e+00, 1.0314e-01, - 2DIAGNOSTIC, 24, -4.855756887548e-01, 1.444453155905e-06, 3.8321e+00, 1.0167e-01, - 2DIAGNOSTIC, 25, -4.855757269606e-01, 1.405229588691e-06, 3.9427e+00, 1.1067e-01, - 2DIAGNOSTIC, 26, -4.855757590141e-01, 1.345457329750e-06, 4.0494e+00, 1.0668e-01, - 2DIAGNOSTIC, 27, -4.855744149889e-01, 1.248765554157e-06, 4.1475e+00, 9.8079e-02, - 2DIAGNOSTIC, 28, -4.855717079021e-01, 1.090965778792e-06, 4.2434e+00, 9.5867e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.184544422918e-01, 1.797693134862e+308, 5.4640e+00, 1.2207e+00, - 2DIAGNOSTIC, 2, -4.188208330193e-01, 1.797693134862e+308, 6.0887e+00, 6.2471e-01, - 2DIAGNOSTIC, 3, -4.190260434545e-01, 1.797693134862e+308, 6.6300e+00, 5.4128e-01, - 2DIAGNOSTIC, 4, -4.191123451394e-01, 1.797693134862e+308, 7.4380e+00, 8.0796e-01, - 2DIAGNOSTIC, 5, -4.191329497728e-01, 1.797693134862e+308, 7.9987e+00, 5.6074e-01, - 2DIAGNOSTIC, 6, -4.191458803718e-01, 1.797693134862e+308, 8.5640e+00, 5.6527e-01, - 2DIAGNOSTIC, 7, -4.191750657727e-01, 1.797693134862e+308, 9.1464e+00, 5.8247e-01, - 2DIAGNOSTIC, 8, -4.192339696004e-01, 1.797693134862e+308, 9.8186e+00, 6.7219e-01, - 2DIAGNOSTIC, 9, -4.192727938777e-01, 1.797693134862e+308, 1.0721e+01, 9.0213e-01, - 2DIAGNOSTIC, 10, -4.192924157503e-01, 9.882134975213e-05, 1.1290e+01, 5.6949e-01, - 2DIAGNOSTIC, 11, -4.193082690700e-01, 5.743955691412e-05, 1.1889e+01, 5.9885e-01, - 2DIAGNOSTIC, 12, -4.193491901803e-01, 4.081022591826e-05, 1.2445e+01, 5.5555e-01, - 2DIAGNOSTIC, 13, -4.193963147093e-01, 3.625243172936e-05, 1.3025e+01, 5.8022e-01, - 2DIAGNOSTIC, 14, -4.194361370654e-01, 3.531121023370e-05, 1.3963e+01, 9.3771e-01, - 2DIAGNOSTIC, 15, -4.194394645085e-01, 3.258393243478e-05, 1.4517e+01, 5.5467e-01, - 2DIAGNOSTIC, 16, -4.194405571512e-01, 2.804799321332e-05, 1.5193e+01, 6.7623e-01, - 2DIAGNOSTIC, 17, -4.194412032800e-01, 2.279009760300e-05, 1.5948e+01, 7.5469e-01, - 2DIAGNOSTIC, 18, -4.194409075317e-01, 1.832896690920e-05, 1.6635e+01, 6.8663e-01, - 2DIAGNOSTIC, 19, -4.194407601274e-01, 1.416412898103e-05, 1.7411e+01, 7.7632e-01, - 2DIAGNOSTIC, 20, -4.194403657172e-01, 9.927824900911e-06, 1.8167e+01, 7.5563e-01, - 2DIAGNOSTIC, 21, -4.194402397904e-01, 5.826763437251e-06, 1.8852e+01, 6.8532e-01, - 2DIAGNOSTIC, 22, -4.194401063083e-01, 2.927232631067e-06, 1.9532e+01, 6.7954e-01, - 2DIAGNOSTIC, 23, -4.194398315808e-01, 1.490219506413e-06, 2.0121e+01, 5.8912e-01, - 2DIAGNOSTIC, 24, -4.194398642580e-01, 1.286928259486e-06, 2.0774e+01, 6.5368e-01, - 2DIAGNOSTIC, 25, -4.194397556817e-01, 1.190111722706e-06, 2.1395e+01, 6.2051e-01, - 2DIAGNOSTIC, 26, -4.194395258927e-01, 1.130468537523e-06, 2.1998e+01, 6.0273e-01, - 2DIAGNOSTIC, 27, -4.194396322957e-01, 1.103184867110e-06, 2.2715e+01, 7.1693e-01, - 2DIAGNOSTIC, 28, -4.194396356821e-01, 1.077757990631e-06, 2.3345e+01, 6.3009e-01, - 2DIAGNOSTIC, 29, -4.194394740430e-01, 1.052544561023e-06, 2.4030e+01, 6.8569e-01, - 2DIAGNOSTIC, 30, -4.194395329611e-01, 1.025806598248e-06, 2.4630e+01, 5.9970e-01, - 2DIAGNOSTIC, 31, -4.194394854929e-01, 1.000332491868e-06, 2.5227e+01, 5.9668e-01, - Elapsed time (stage 1): 2.5591e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.180535404836e-01, 1.797693134862e+308, 2.4956e-01, 2.4956e-01, - 1DIAGNOSTIC, 2, -9.252887432819e-01, 1.797693134862e+308, 3.4450e-01, 9.4947e-02, - 1DIAGNOSTIC, 3, -9.313086785612e-01, 1.797693134862e+308, 4.3814e-01, 9.3639e-02, - 1DIAGNOSTIC, 4, -9.364531356243e-01, 1.797693134862e+308, 5.3159e-01, 9.3448e-02, - 1DIAGNOSTIC, 5, -9.399355930524e-01, 1.797693134862e+308, 6.2736e-01, 9.5772e-02, - 1DIAGNOSTIC, 6, -9.430180917818e-01, 1.797693134862e+308, 7.2147e-01, 9.4111e-02, - 1DIAGNOSTIC, 7, -9.452791807501e-01, 1.797693134862e+308, 8.2112e-01, 9.9649e-02, - 1DIAGNOSTIC, 8, -9.472250728873e-01, 1.797693134862e+308, 9.1547e-01, 9.4346e-02, - 1DIAGNOSTIC, 9, -9.489848739020e-01, 1.797693134862e+308, 1.0149e+00, 9.9475e-02, - 1DIAGNOSTIC, 10, -9.505594844840e-01, 2.092853484384e-03, 1.1151e+00, 1.0013e-01, - 1DIAGNOSTIC, 11, -9.520260859735e-01, 1.545999466866e-03, 1.2096e+00, 9.4495e-02, - 1DIAGNOSTIC, 12, -9.532562966779e-01, 1.163488812060e-03, 1.3136e+00, 1.0404e-01, - 1DIAGNOSTIC, 13, -9.541792078872e-01, 8.947058779487e-04, 1.4074e+00, 9.3812e-02, - 1DIAGNOSTIC, 14, -9.549155381299e-01, 7.091844268968e-04, 1.5048e+00, 9.7421e-02, - 1DIAGNOSTIC, 15, -9.555197163778e-01, 5.650755799642e-04, 1.5996e+00, 9.4804e-02, - 1DIAGNOSTIC, 16, -9.560258575999e-01, 4.543100303755e-04, 1.6939e+00, 9.4292e-02, - 1DIAGNOSTIC, 17, -9.564517199538e-01, 3.620339363557e-04, 1.7888e+00, 9.4909e-02, - 1DIAGNOSTIC, 18, -9.568084221364e-01, 2.848636130474e-04, 1.8866e+00, 9.7747e-02, - 1DIAGNOSTIC, 19, -9.571129002053e-01, 2.219580631739e-04, 1.9789e+00, 9.2352e-02, - 1DIAGNOSTIC, 20, -9.573574330584e-01, 1.718821520042e-04, 2.0757e+00, 9.6790e-02, - 1DIAGNOSTIC, 21, -9.575546559434e-01, 1.342204006937e-04, 2.1762e+00, 1.0047e-01, - 1DIAGNOSTIC, 22, -9.577137879027e-01, 1.063504087847e-04, 2.2726e+00, 9.6389e-02, - 1DIAGNOSTIC, 23, -9.578756210349e-01, 8.508812808183e-05, 2.3708e+00, 9.8240e-02, - 1DIAGNOSTIC, 24, -9.579734370742e-01, 6.804423223304e-05, 2.4682e+00, 9.7393e-02, - 1DIAGNOSTIC, 25, -9.581127963149e-01, 5.492654890097e-05, 2.5617e+00, 9.3482e-02, - 1DIAGNOSTIC, 26, -9.581503355385e-01, 4.395105710554e-05, 2.6636e+00, 1.0187e-01, - 1DIAGNOSTIC, 27, -9.582940172060e-01, 3.603626114893e-05, 2.7629e+00, 9.9297e-02, - 1DIAGNOSTIC, 28, -9.582806924704e-01, 2.899245338332e-05, 2.8634e+00, 1.0051e-01, - 1DIAGNOSTIC, 29, -9.584546112821e-01, 2.472051043145e-05, 2.9611e+00, 9.7750e-02, - 1DIAGNOSTIC, 30, -9.583549146087e-01, 1.987961727697e-05, 3.0566e+00, 9.5470e-02, - 1DIAGNOSTIC, 31, -9.585904932605e-01, 1.776519162532e-05, 3.1563e+00, 9.9676e-02, - 1DIAGNOSTIC, 32, -9.583766164108e-01, 1.360572866765e-05, 3.2618e+00, 1.0547e-01, - 1DIAGNOSTIC, 33, -9.586004536299e-01, 1.204897761776e-05, 3.3635e+00, 1.0175e-01, - 1DIAGNOSTIC, 34, -9.582942941201e-01, 7.625355575615e-06, 3.4567e+00, 9.3172e-02, - 1DIAGNOSTIC, 35, -9.585458817903e-01, 6.229487179495e-06, 3.5533e+00, 9.6572e-02, - 1DIAGNOSTIC, 36, -9.582749534655e-01, 2.375944115580e-06, 3.6468e+00, 9.3526e-02, - 1DIAGNOSTIC, 37, -9.585400654838e-01, 1.957120304482e-06, 3.7490e+00, 1.0218e-01, - 1DIAGNOSTIC, 38, -9.582672536281e-01, -8.762752297907e-07, 3.8484e+00, 9.9411e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.164503992025e-01, 1.797693134862e+308, 4.6718e+00, 8.2344e-01, - 1DIAGNOSTIC, 2, -9.212120193076e-01, 1.797693134862e+308, 5.3345e+00, 6.6265e-01, - 1DIAGNOSTIC, 3, -9.252840556605e-01, 1.797693134862e+308, 5.9974e+00, 6.6293e-01, - 1DIAGNOSTIC, 4, -9.284862834529e-01, 1.797693134862e+308, 6.6600e+00, 6.6264e-01, - 1DIAGNOSTIC, 5, -9.310533388656e-01, 1.797693134862e+308, 7.3110e+00, 6.5094e-01, - 1DIAGNOSTIC, 6, -9.331869940541e-01, 1.797693134862e+308, 7.9513e+00, 6.4028e-01, - 1DIAGNOSTIC, 7, -9.350323209613e-01, 1.797693134862e+308, 8.6221e+00, 6.7087e-01, - 1DIAGNOSTIC, 8, -9.365381763156e-01, 1.797693134862e+308, 9.2829e+00, 6.6073e-01, - 1DIAGNOSTIC, 9, -9.376843436139e-01, 1.797693134862e+308, 9.9410e+00, 6.5817e-01, - 1DIAGNOSTIC, 10, -9.387284301623e-01, 1.468840659637e-03, 1.0616e+01, 6.7487e-01, - 1DIAGNOSTIC, 11, -9.395327276111e-01, 1.095803283621e-03, 1.1274e+01, 6.5829e-01, - 1DIAGNOSTIC, 12, -9.401352382484e-01, 8.219620821111e-04, 1.1935e+01, 6.6083e-01, - 1DIAGNOSTIC, 13, -9.407732104561e-01, 6.258019220010e-04, 1.2603e+01, 6.6779e-01, - 1DIAGNOSTIC, 14, -9.412649565330e-01, 4.806797732838e-04, 1.3270e+01, 6.6748e-01, - 1DIAGNOSTIC, 15, -9.417059852022e-01, 3.717104400240e-04, 1.3922e+01, 6.5199e-01, - 1DIAGNOSTIC, 16, -9.421309656403e-01, 2.906238582337e-04, 1.4570e+01, 6.4753e-01, - 1DIAGNOSTIC, 17, -9.425228432105e-01, 2.321211858544e-04, 1.5213e+01, 6.4349e-01, - 1DIAGNOSTIC, 18, -9.428898503890e-01, 1.901711604134e-04, 1.5879e+01, 6.6600e-01, - 1DIAGNOSTIC, 19, -9.432395753253e-01, 1.587869074039e-04, 1.6522e+01, 6.4285e-01, - 1DIAGNOSTIC, 20, -9.435595447797e-01, 1.364432656288e-04, 1.7172e+01, 6.4935e-01, - 1DIAGNOSTIC, 21, -9.438643413894e-01, 1.195580116614e-04, 1.7828e+01, 6.5678e-01, - 1DIAGNOSTIC, 22, -9.441539155542e-01, 1.053114372932e-04, 1.8489e+01, 6.6114e-01, - 1DIAGNOSTIC, 23, -9.444197834515e-01, 9.438147427471e-05, 1.9158e+01, 6.6869e-01, - 1DIAGNOSTIC, 24, -9.446797213229e-01, 8.503914630548e-05, 1.9821e+01, 6.6298e-01, - 1DIAGNOSTIC, 25, -9.449199645952e-01, 7.674327931752e-05, 2.0490e+01, 6.6932e-01, - 1DIAGNOSTIC, 26, -9.451407221982e-01, 6.942669334297e-05, 2.1155e+01, 6.6450e-01, - 1DIAGNOSTIC, 27, -9.453455353559e-01, 6.284597515753e-05, 2.1823e+01, 6.6850e-01, - 1DIAGNOSTIC, 28, -9.455309717392e-01, 5.682256587770e-05, 2.2495e+01, 6.7114e-01, - 1DIAGNOSTIC, 29, -9.456984709577e-01, 5.129376372920e-05, 2.3152e+01, 6.5710e-01, - 1DIAGNOSTIC, 30, -9.458529231756e-01, 4.611729033529e-05, 2.3820e+01, 6.6855e-01, - 1DIAGNOSTIC, 31, -9.459967650579e-01, 4.133765789122e-05, 2.4489e+01, 6.6898e-01, - 1DIAGNOSTIC, 32, -9.461369552739e-01, 3.705518277523e-05, 2.5150e+01, 6.6127e-01, - 1DIAGNOSTIC, 33, -9.462610788644e-01, 3.314113222878e-05, 2.5789e+01, 6.3884e-01, - 1DIAGNOSTIC, 34, -9.463766231311e-01, 2.970454351166e-05, 2.6432e+01, 6.4223e-01, - 1DIAGNOSTIC, 35, -9.464861819798e-01, 2.671888495648e-05, 2.7098e+01, 6.6650e-01, - 1DIAGNOSTIC, 36, -9.465881699608e-01, 2.412165094574e-05, 2.7763e+01, 6.6503e-01, - 1DIAGNOSTIC, 37, -9.466848527408e-01, 2.188604510237e-05, 2.8427e+01, 6.6348e-01, - 1DIAGNOSTIC, 38, -9.467692388467e-01, 1.988559473911e-05, 2.9074e+01, 6.4777e-01, - 1DIAGNOSTIC, 39, -9.468560265054e-01, 1.812163348236e-05, 2.9723e+01, 6.4864e-01, - 1DIAGNOSTIC, 40, -9.469387763529e-01, 1.656550204651e-05, 3.0377e+01, 6.5431e-01, - 1DIAGNOSTIC, 41, -9.470172545552e-01, 1.519642258758e-05, 3.1034e+01, 6.5695e-01, - 1DIAGNOSTIC, 42, -9.470920089392e-01, 1.404368939842e-05, 3.1698e+01, 6.6367e-01, - 1DIAGNOSTIC, 43, -9.471632404205e-01, 1.303173110819e-05, 3.2346e+01, 6.4772e-01, - 1DIAGNOSTIC, 44, -9.472271299393e-01, 1.210699195242e-05, 3.2982e+01, 6.3605e-01, - 1DIAGNOSTIC, 45, -9.472875362699e-01, 1.126096093340e-05, 3.3630e+01, 6.4865e-01, - 1DIAGNOSTIC, 46, -9.473447250093e-01, 1.047339490955e-05, 3.4299e+01, 6.6873e-01, - 1DIAGNOSTIC, 47, -9.473980556942e-01, 9.735703976055e-06, 3.4960e+01, 6.6096e-01, - 1DIAGNOSTIC, 48, -9.474484293483e-01, 8.997608632041e-06, 3.5641e+01, 6.8073e-01, - 1DIAGNOSTIC, 49, -9.474880854927e-01, 8.259972150527e-06, 3.6333e+01, 6.9257e-01, - 1DIAGNOSTIC, 50, -9.475328081526e-01, 7.583946035797e-06, 3.7016e+01, 6.8229e-01, - 1DIAGNOSTIC, 51, -9.475745842792e-01, 6.970345909896e-06, 3.7703e+01, 6.8689e-01, - 1DIAGNOSTIC, 52, -9.476138018116e-01, 6.423718738071e-06, 3.8377e+01, 6.7449e-01, - 1DIAGNOSTIC, 53, -9.476503662827e-01, 5.946579268432e-06, 3.9047e+01, 6.7019e-01, - 1DIAGNOSTIC, 54, -9.476852462071e-01, 5.519690653225e-06, 3.9700e+01, 6.5293e-01, - 1DIAGNOSTIC, 55, -9.477193234480e-01, 5.146828236803e-06, 4.0374e+01, 6.7390e-01, - 1DIAGNOSTIC, 56, -9.477513505193e-01, 4.822314329980e-06, 4.1040e+01, 6.6622e-01, - 1DIAGNOSTIC, 57, -9.477807697989e-01, 4.532360826225e-06, 4.1710e+01, 6.7004e-01, - 1DIAGNOSTIC, 58, -9.478087491705e-01, 4.274191911541e-06, 4.2363e+01, 6.5253e-01, - 1DIAGNOSTIC, 59, -9.478351014516e-01, 3.999351779780e-06, 4.2992e+01, 6.2967e-01, - 1DIAGNOSTIC, 60, -9.478620585179e-01, 3.756718732779e-06, 4.3638e+01, 6.4584e-01, - 1DIAGNOSTIC, 61, -9.478836886467e-01, 3.520736705096e-06, 4.4276e+01, 6.3747e-01, - 1DIAGNOSTIC, 62, -9.479090923846e-01, 3.314872008220e-06, 4.4904e+01, 6.2812e-01, - 1DIAGNOSTIC, 63, -9.479335847308e-01, 3.134403274315e-06, 4.5544e+01, 6.4031e-01, - 1DIAGNOSTIC, 64, -9.479486941140e-01, 2.938189856534e-06, 4.6212e+01, 6.6778e-01, - 1DIAGNOSTIC, 65, -9.479704874595e-01, 2.769944282954e-06, 4.6861e+01, 6.4905e-01, - 1DIAGNOSTIC, 66, -9.479931058662e-01, 2.633650442254e-06, 4.7515e+01, 6.5391e-01, - 1DIAGNOSTIC, 67, -9.480148781430e-01, 2.520944087977e-06, 4.8186e+01, 6.7082e-01, - 1DIAGNOSTIC, 68, -9.480362022353e-01, 2.430124035960e-06, 4.8842e+01, 6.5624e-01, - 1DIAGNOSTIC, 69, -9.480566748138e-01, 2.355160361060e-06, 4.9508e+01, 6.6556e-01, - 1DIAGNOSTIC, 70, -9.480765617310e-01, 2.299734988982e-06, 5.0173e+01, 6.6558e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.942048072671e-01, 1.797693134862e+308, 5.5792e+01, 5.6193e+00, - 1DIAGNOSTIC, 2, -8.982114985321e-01, 1.797693134862e+308, 6.1100e+01, 5.3077e+00, - 1DIAGNOSTIC, 3, -9.019007395975e-01, 1.797693134862e+308, 6.6466e+01, 5.3660e+00, - 1DIAGNOSTIC, 4, -9.056801213879e-01, 1.797693134862e+308, 7.1817e+01, 5.3505e+00, - 1DIAGNOSTIC, 5, -9.083805478919e-01, 1.797693134862e+308, 7.7146e+01, 5.3288e+00, - 1DIAGNOSTIC, 6, -9.108869626880e-01, 1.797693134862e+308, 8.2482e+01, 5.3365e+00, - 1DIAGNOSTIC, 7, -9.131837617157e-01, 1.797693134862e+308, 8.7798e+01, 5.3157e+00, - 1DIAGNOSTIC, 8, -9.152243035133e-01, 1.797693134862e+308, 9.3131e+01, 5.3332e+00, - 1DIAGNOSTIC, 9, -9.169617709553e-01, 1.797693134862e+308, 9.8499e+01, 5.3685e+00, - 1DIAGNOSTIC, 10, -9.184275701132e-01, 1.688936361132e-03, 1.0379e+02, 5.2940e+00, - 1DIAGNOSTIC, 11, -9.194220131932e-01, 1.342440490397e-03, 1.0917e+02, 5.3726e+00, - 1DIAGNOSTIC, 12, -9.205454060487e-01, 1.066252185177e-03, 1.1456e+02, 5.3898e+00, - 1DIAGNOSTIC, 13, -9.212855351851e-01, 8.413490292786e-04, 1.1997e+02, 5.4127e+00, - 1DIAGNOSTIC, 14, -9.220955466139e-01, 6.739360098412e-04, 1.2531e+02, 5.3414e+00, - 1DIAGNOSTIC, 15, -9.227274429233e-01, 5.361005081276e-04, 1.3075e+02, 5.4355e+00, - 1DIAGNOSTIC, 16, -9.234633781172e-01, 4.290917377246e-04, 1.3611e+02, 5.3648e+00, - 1DIAGNOSTIC, 17, -9.240345528621e-01, 3.472441593138e-04, 1.4147e+02, 5.3575e+00, - 1DIAGNOSTIC, 18, -9.245705779255e-01, 2.866111210485e-04, 1.4683e+02, 5.3610e+00, - 1DIAGNOSTIC, 19, -9.250818899519e-01, 2.423608312102e-04, 1.5220e+02, 5.3716e+00, - 1DIAGNOSTIC, 20, -9.255767907364e-01, 2.103726600278e-04, 1.5762e+02, 5.4192e+00, - 1DIAGNOSTIC, 21, -9.260445598881e-01, 1.832340763762e-04, 1.6299e+02, 5.3703e+00, - 1DIAGNOSTIC, 22, -9.264854388440e-01, 1.634690465578e-04, 1.6837e+02, 5.3757e+00, - 1DIAGNOSTIC, 23, -9.269055167005e-01, 1.457103703790e-04, 1.7371e+02, 5.3429e+00, - 1DIAGNOSTIC, 24, -9.273100134958e-01, 1.314506703289e-04, 1.7904e+02, 5.3347e+00, - 1DIAGNOSTIC, 25, -9.276807966853e-01, 1.183396686750e-04, 1.8440e+02, 5.3534e+00, - 1DIAGNOSTIC, 26, -9.280186613712e-01, 1.078829292311e-04, 1.8977e+02, 5.3727e+00, - 1DIAGNOSTIC, 27, -9.283358666486e-01, 9.822537445014e-05, 1.9516e+02, 5.3916e+00, - 1DIAGNOSTIC, 28, -9.286318275711e-01, 8.919041523123e-05, 2.0053e+02, 5.3657e+00, - 1DIAGNOSTIC, 29, -9.289158354590e-01, 8.084074150361e-05, 2.0590e+02, 5.3765e+00, - 1DIAGNOSTIC, 30, -9.291948585935e-01, 7.338884864602e-05, 2.1126e+02, 5.3526e+00, - 1DIAGNOSTIC, 31, -9.294723522968e-01, 6.691588355309e-05, 2.1663e+02, 5.3747e+00, - 1DIAGNOSTIC, 32, -9.297461874713e-01, 6.142306937325e-05, 2.2197e+02, 5.3384e+00, - 1DIAGNOSTIC, 33, -9.300196550851e-01, 5.694295428047e-05, 2.2733e+02, 5.3590e+00, - 1DIAGNOSTIC, 34, -9.302871471655e-01, 5.344081104843e-05, 2.3271e+02, 5.3833e+00, - 1DIAGNOSTIC, 35, -9.305337680433e-01, 5.052809087634e-05, 2.3808e+02, 5.3657e+00, - 1DIAGNOSTIC, 36, -9.307598976553e-01, 4.783411390981e-05, 2.4341e+02, 5.3342e+00, - 1DIAGNOSTIC, 37, -9.309696714925e-01, 4.515974514631e-05, 2.4879e+02, 5.3837e+00, - 1DIAGNOSTIC, 38, -9.311612833052e-01, 4.231559113601e-05, 2.5415e+02, 5.3510e+00, - 1DIAGNOSTIC, 39, -9.313427794336e-01, 3.929899053426e-05, 2.5952e+02, 5.3692e+00, - 1DIAGNOSTIC, 40, -9.315172244553e-01, 3.621541576290e-05, 2.6489e+02, 5.3718e+00, - 1DIAGNOSTIC, 41, -9.316793656422e-01, 3.316752823204e-05, 2.7027e+02, 5.3856e+00, - 1DIAGNOSTIC, 42, -9.318337066138e-01, 3.027549047989e-05, 2.7565e+02, 5.3756e+00, - 1DIAGNOSTIC, 43, -9.319818482502e-01, 2.768108237558e-05, 2.8097e+02, 5.3177e+00, - 1DIAGNOSTIC, 44, -9.321243296556e-01, 2.546409516203e-05, 2.8629e+02, 5.3280e+00, - 1DIAGNOSTIC, 45, -9.322608454623e-01, 2.356864038599e-05, 2.9168e+02, 5.3905e+00, - 1DIAGNOSTIC, 46, -9.323917670047e-01, 2.192811611200e-05, 2.9706e+02, 5.3773e+00, - 1DIAGNOSTIC, 47, -9.325147100534e-01, 2.047751232260e-05, 3.0241e+02, 5.3457e+00, - 1DIAGNOSTIC, 48, -9.326380000970e-01, 1.918595338278e-05, 3.0776e+02, 5.3544e+00, - 1DIAGNOSTIC, 49, -9.327572868589e-01, 1.803669338519e-05, 3.1313e+02, 5.3706e+00, - 1DIAGNOSTIC, 50, -9.328729085700e-01, 1.702929013354e-05, 3.1850e+02, 5.3691e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.964221536423e-01, 1.797693134862e+308, 3.6247e+02, 4.3974e+01, - 1DIAGNOSTIC, 2, -8.983933764237e-01, 1.797693134862e+308, 4.0577e+02, 4.3295e+01, - 1DIAGNOSTIC, 3, -9.003937141861e-01, 1.797693134862e+308, 4.4916e+02, 4.3395e+01, - 1DIAGNOSTIC, 4, -9.023181026148e-01, 1.797693134862e+308, 4.9277e+02, 4.3605e+01, - 1DIAGNOSTIC, 5, -9.040674733457e-01, 1.797693134862e+308, 5.3601e+02, 4.3244e+01, - 1DIAGNOSTIC, 6, -9.056266496119e-01, 1.797693134862e+308, 5.7924e+02, 4.3224e+01, - 1DIAGNOSTIC, 7, -9.069859811163e-01, 1.797693134862e+308, 6.2268e+02, 4.3437e+01, - 1DIAGNOSTIC, 8, -9.081472646295e-01, 1.797693134862e+308, 6.6607e+02, 4.3393e+01, - 1DIAGNOSTIC, 9, -9.091323681549e-01, 1.797693134862e+308, 7.0943e+02, 4.3357e+01, - 1DIAGNOSTIC, 10, -9.098335335466e-01, 9.673961879567e-04, 7.5269e+02, 4.3259e+01, - 1DIAGNOSTIC, 11, -9.104107011039e-01, 7.790573026413e-04, 7.9605e+02, 4.3370e+01, - 1DIAGNOSTIC, 12, -9.108974142792e-01, 6.162120253727e-04, 8.3970e+02, 4.3647e+01, - 1DIAGNOSTIC, 13, -9.113172716781e-01, 4.808120339121e-04, 8.8342e+02, 4.3716e+01, - 1DIAGNOSTIC, 14, -9.115816966451e-01, 3.698075077652e-04, 9.2690e+02, 4.3485e+01, - 1DIAGNOSTIC, 15, -9.118069865377e-01, 2.809650674788e-04, 9.7038e+02, 4.3475e+01, - 1DIAGNOSTIC, 16, -9.120002456188e-01, 2.116706447261e-04, 1.0140e+03, 4.3599e+01, - 1DIAGNOSTIC, 17, -9.121670066010e-01, 1.590225958605e-04, 1.0575e+03, 4.3543e+01, - 1DIAGNOSTIC, 18, -9.123105605830e-01, 1.201141779538e-04, 1.1010e+03, 4.3463e+01, - 1DIAGNOSTIC, 19, -9.124442914571e-01, 9.261450350970e-05, 1.1444e+03, 4.3450e+01, - 1DIAGNOSTIC, 20, -9.125514076967e-01, 7.194445253725e-05, 1.1878e+03, 4.3366e+01, - Elapsed time (stage 2): 1188 - - -Total elapsed time: 1237 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:34:50 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:34:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:34:53 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:34:57 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:00 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23414 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:01 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:04 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23507 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:05 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/anat/sub-PNC009_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:07 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:08 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23559 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:08 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 23564 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:08 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:12 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:14 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:14 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:15 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:16 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:18 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:19 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:20 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:21 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/surf/sub-PNC009_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:23 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:32 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:43 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02/sub-PNC009_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC009 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:43 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC009 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:44 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC009 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:44 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24164 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:46 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:46 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc/sub-PNC009_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/xfm/sub-PNC009_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 24203 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:47 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:48 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC009_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 66.967 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/logs/proc_func_19-03-2024-7253.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:53 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC009 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-02/QC/sub-PNC009_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/20327_micapipe_proc-func_sub-PNC009_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC009* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 67.000 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC009_ses-02 -========================reprocessing without filter=================== -sub-PNC009_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC009 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC009 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC009 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC009 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:57 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:35:57 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-1_bold.nii.gz is 42.500000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:38:00 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:40:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:40:18 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 1.64 (mm) at sub-brick 1 -++ Max delta displ in automask = 0.52 (mm) at sub-brick 180 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:53:02 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:53:19 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-2_bold.nii.gz is 42.500000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:55:29 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:57:36 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC009/ses-03/func/sub-PNC009_ses-03_task-rest_echo-3_bold.nii.gz is 42.500000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 06:59:46 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.163 -3.511 1.291 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.7 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.264 -5.096 1.798 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.9 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:04:29 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:04:58 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x559015dd2a50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [105.102, 46.6814, -128.214] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559015c49730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x559015de9350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x559015dd9600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [72.8093, 118.5, -134.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559015ddbe40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5590165e5f50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5590165e4270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [105.102, 46.6814, -128.214] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559015dd8640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5590171101c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5590165e3a00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [72.8093, 118.5, -134.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559015ddf450) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55901790a300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.347385092423e-01, 1.797693134862e+308, 3.9950e-02, 3.9950e-02, - 2DIAGNOSTIC, 2, -6.369527694073e-01, 1.797693134862e+308, 4.1644e-02, 1.6940e-03, - 2DIAGNOSTIC, 3, -6.391020174340e-01, 1.797693134862e+308, 4.3435e-02, 1.7910e-03, - 2DIAGNOSTIC, 4, -6.396235346310e-01, 1.797693134862e+308, 4.4670e-02, 1.2350e-03, - 2DIAGNOSTIC, 5, -6.409686063277e-01, 1.797693134862e+308, 4.5924e-02, 1.2541e-03, - 2DIAGNOSTIC, 6, -6.417291464970e-01, 1.797693134862e+308, 4.7290e-02, 1.3661e-03, - 2DIAGNOSTIC, 7, -6.421004087841e-01, 1.797693134862e+308, 4.9275e-02, 1.9848e-03, - 2DIAGNOSTIC, 8, -6.423069518681e-01, 1.797693134862e+308, 5.0531e-02, 1.2560e-03, - 2DIAGNOSTIC, 9, -6.425471228926e-01, 1.797693134862e+308, 5.2050e-02, 1.5190e-03, - 2DIAGNOSTIC, 10, -6.426887699695e-01, 7.298063298672e-04, 5.3983e-02, 1.9329e-03, - 2DIAGNOSTIC, 11, -6.427318803851e-01, 4.729074152708e-04, 5.5707e-02, 1.7240e-03, - 2DIAGNOSTIC, 12, -6.428820974071e-01, 3.027939315246e-04, 5.7419e-02, 1.7118e-03, - 2DIAGNOSTIC, 13, -6.432501286735e-01, 2.179243213599e-04, 5.8922e-02, 1.5030e-03, - 2DIAGNOSTIC, 14, -6.435371382530e-01, 1.500904622660e-04, 6.0656e-02, 1.7340e-03, - 2DIAGNOSTIC, 15, -6.436329750173e-01, 1.198628842119e-04, 6.2875e-02, 2.2190e-03, - 2DIAGNOSTIC, 16, -6.436509590683e-01, 1.042113219278e-04, 6.4407e-02, 1.5318e-03, - 2DIAGNOSTIC, 17, -6.438058901765e-01, 9.472341313566e-05, 6.5892e-02, 1.4858e-03, - 2DIAGNOSTIC, 18, -6.438623191855e-01, 8.381948765081e-05, 6.7418e-02, 1.5252e-03, - 2DIAGNOSTIC, 19, -6.441965614427e-01, 7.968476673213e-05, 6.8897e-02, 1.4799e-03, - 2DIAGNOSTIC, 20, -6.452491087938e-01, 9.508906627044e-05, 7.0620e-02, 1.7221e-03, - 2DIAGNOSTIC, 21, -6.485921380686e-01, 1.711787380278e-04, 7.2828e-02, 2.2080e-03, - 2DIAGNOSTIC, 22, -6.492491129514e-01, 2.389424830234e-04, 7.4313e-02, 1.4851e-03, - 2DIAGNOSTIC, 23, -6.499842218949e-01, 3.002918774177e-04, 7.5954e-02, 1.6410e-03, - 2DIAGNOSTIC, 24, -6.509725576916e-01, 3.525069558584e-04, 7.7418e-02, 1.4639e-03, - 2DIAGNOSTIC, 25, -6.570555634559e-01, 4.758270375101e-04, 7.9153e-02, 1.7350e-03, - 2DIAGNOSTIC, 26, -6.971627748178e-01, 1.219082114327e-03, 8.0833e-02, 1.6801e-03, - 2DIAGNOSTIC, 27, -7.593268851295e-01, 2.774203143006e-03, 8.3471e-02, 2.6381e-03, - 2DIAGNOSTIC, 28, -7.460597896609e-01, 3.720073714307e-03, 8.4963e-02, 1.4920e-03, - 2DIAGNOSTIC, 29, -7.538676703424e-01, 4.388306015619e-03, 8.6435e-02, 1.4720e-03, - 2DIAGNOSTIC, 30, -7.646951694696e-01, 4.765004554991e-03, 8.7950e-02, 1.5149e-03, - 2DIAGNOSTIC, 31, -7.674526919546e-01, 4.729891691622e-03, 8.9408e-02, 1.4579e-03, - 2DIAGNOSTIC, 32, -7.717715321303e-01, 4.305030673116e-03, 9.0876e-02, 1.4679e-03, - 2DIAGNOSTIC, 33, -7.760341051847e-01, 3.576584363682e-03, 9.2594e-02, 1.7180e-03, - 2DIAGNOSTIC, 34, -7.796368896182e-01, 2.630734477905e-03, 9.4517e-02, 1.9231e-03, - 2DIAGNOSTIC, 35, -7.820370493303e-01, 1.590141800358e-03, 9.6287e-02, 1.7700e-03, - 2DIAGNOSTIC, 36, -7.831643616375e-01, 9.225794321094e-04, 9.7944e-02, 1.6570e-03, - 2DIAGNOSTIC, 37, -7.833988370867e-01, 9.179668820606e-04, 9.9403e-02, 1.4589e-03, - 2DIAGNOSTIC, 38, -7.840413947172e-01, 6.877107869364e-04, 1.0111e-01, 1.7121e-03, - 2DIAGNOSTIC, 39, -7.846805082757e-01, 4.921039612178e-04, 1.0259e-01, 1.4760e-03, - 2DIAGNOSTIC, 40, -7.885766860276e-01, 4.121869770011e-04, 1.0573e-01, 3.1371e-03, - 2DIAGNOSTIC, 41, -7.895658173835e-01, 3.337094141432e-04, 1.0719e-01, 1.4589e-03, - 2DIAGNOSTIC, 42, -7.901514866497e-01, 2.753314532023e-04, 1.0866e-01, 1.4770e-03, - 2DIAGNOSTIC, 43, -7.907954360834e-01, 2.402785316600e-04, 1.1012e-01, 1.4529e-03, - 2DIAGNOSTIC, 44, -7.910496472959e-01, 2.191330648053e-04, 1.1161e-01, 1.4939e-03, - 2DIAGNOSTIC, 45, -7.911977716775e-01, 2.004401958093e-04, 1.1308e-01, 1.4670e-03, - 2DIAGNOSTIC, 46, -7.923160118187e-01, 1.832131418759e-04, 1.1477e-01, 1.6959e-03, - 2DIAGNOSTIC, 47, -7.940755852402e-01, 1.665671650397e-04, 1.1697e-01, 2.1932e-03, - 2DIAGNOSTIC, 48, -7.943916928465e-01, 1.428538848251e-04, 1.1869e-01, 1.7278e-03, - 2DIAGNOSTIC, 49, -7.945674482034e-01, 1.127577366392e-04, 1.2021e-01, 1.5140e-03, - 2DIAGNOSTIC, 50, -7.945857789484e-01, 1.046698248680e-04, 1.2168e-01, 1.4679e-03, - 2DIAGNOSTIC, 51, -7.946747321832e-01, 9.523264100673e-05, 1.2317e-01, 1.4980e-03, - 2DIAGNOSTIC, 52, -7.951424257966e-01, 8.484831868589e-05, 1.2485e-01, 1.6751e-03, - 2DIAGNOSTIC, 53, -7.956352961342e-01, 7.526838155538e-05, 1.2794e-01, 3.0930e-03, - 2DIAGNOSTIC, 54, -7.956389107649e-01, 6.102333776145e-05, 1.2940e-01, 1.4620e-03, - 2DIAGNOSTIC, 55, -7.956603215831e-01, 4.283141343542e-05, 1.3089e-01, 1.4849e-03, - 2DIAGNOSTIC, 56, -7.956776875520e-01, 2.903879979765e-05, 1.3239e-01, 1.5032e-03, - 2DIAGNOSTIC, 57, -7.956889139491e-01, 2.518082047357e-05, 1.3384e-01, 1.4451e-03, - 2DIAGNOSTIC, 58, -7.957022332784e-01, 2.125681359428e-05, 1.3529e-01, 1.4501e-03, - 2DIAGNOSTIC, 59, -7.957316586311e-01, 1.690360022113e-05, 1.3675e-01, 1.4591e-03, - 2DIAGNOSTIC, 60, -7.957770740033e-01, 1.162649962697e-05, 1.3822e-01, 1.4732e-03, - 2DIAGNOSTIC, 61, -7.959099277664e-01, 6.846468487139e-06, 1.4040e-01, 2.1770e-03, - 2DIAGNOSTIC, 62, -7.959247843958e-01, 4.568010510363e-06, 1.4678e-01, 6.3829e-03, - 2DIAGNOSTIC, 63, -7.959247842204e-01, 5.048688700555e-06, 1.5269e-01, 5.9102e-03, - 2DIAGNOSTIC, 64, -7.959247842204e-01, 5.111173262531e-06, 1.5442e-01, 1.7331e-03, - 2DIAGNOSTIC, 65, -7.959247842204e-01, 4.852669090036e-06, 1.5670e-01, 2.2759e-03, - 2DIAGNOSTIC, 66, -7.959247842204e-01, 4.276753095452e-06, 1.5913e-01, 2.4302e-03, - 2DIAGNOSTIC, 67, -7.959247842204e-01, 3.423262776924e-06, 1.6140e-01, 2.2740e-03, - 2DIAGNOSTIC, 68, -7.959247842204e-01, 2.403446587886e-06, 1.6398e-01, 2.5740e-03, - 2DIAGNOSTIC, 69, -7.959247842204e-01, 1.401287219580e-06, 1.6598e-01, 2.0010e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.785299207208e-01, 1.797693134862e+308, 2.1179e-01, 4.5810e-02, - 2DIAGNOSTIC, 2, -3.774689723287e-01, 1.797693134862e+308, 2.1432e-01, 2.5270e-03, - 2DIAGNOSTIC, 3, -3.790668651084e-01, 1.797693134862e+308, 2.1682e-01, 2.5060e-03, - 2DIAGNOSTIC, 4, -3.799217713530e-01, 1.797693134862e+308, 2.1925e-01, 2.4290e-03, - 2DIAGNOSTIC, 5, -3.805676828557e-01, 1.797693134862e+308, 2.2148e-01, 2.2299e-03, - 2DIAGNOSTIC, 6, -3.814987533998e-01, 1.797693134862e+308, 2.2366e-01, 2.1820e-03, - 2DIAGNOSTIC, 7, -3.871116009268e-01, 1.797693134862e+308, 2.2581e-01, 2.1498e-03, - 2DIAGNOSTIC, 8, -3.914153137841e-01, 1.797693134862e+308, 2.2797e-01, 2.1541e-03, - 2DIAGNOSTIC, 9, -3.954313148165e-01, 1.797693134862e+308, 2.3105e-01, 3.0868e-03, - 2DIAGNOSTIC, 10, -4.077189223306e-01, 4.205899319283e-03, 2.3415e-01, 3.0971e-03, - 2DIAGNOSTIC, 11, -4.092602597620e-01, 4.910786073304e-03, 2.3663e-01, 2.4841e-03, - 2DIAGNOSTIC, 12, -4.114131914217e-01, 5.120081670987e-03, 2.3913e-01, 2.4970e-03, - 2DIAGNOSTIC, 13, -4.153308528037e-01, 5.142024924017e-03, 2.4163e-01, 2.4960e-03, - 2DIAGNOSTIC, 14, -4.287113777832e-01, 5.411416490987e-03, 2.4416e-01, 2.5280e-03, - 2DIAGNOSTIC, 15, -4.940186246556e-01, 8.190309053097e-03, 2.4733e-01, 3.1762e-03, - 2DIAGNOSTIC, 16, -5.488956005194e-01, 1.206440526410e-02, 2.5112e-01, 3.7930e-03, - 2DIAGNOSTIC, 17, -5.504928699266e-01, 1.451686916097e-02, 2.5362e-01, 2.4970e-03, - 2DIAGNOSTIC, 18, -5.546964027524e-01, 1.566591018128e-02, 2.5611e-01, 2.4869e-03, - 2DIAGNOSTIC, 19, -5.976704823490e-01, 1.676725921613e-02, 2.5866e-01, 2.5520e-03, - 2DIAGNOSTIC, 20, -6.230597101549e-01, 1.726995122891e-02, 2.6140e-01, 2.7421e-03, - 2DIAGNOSTIC, 21, -6.265222259812e-01, 1.623864595907e-02, 2.6431e-01, 2.9030e-03, - 2DIAGNOSTIC, 22, -6.282257276329e-01, 1.399993575886e-02, 2.6775e-01, 3.4451e-03, - 2DIAGNOSTIC, 23, -6.284569277343e-01, 1.088076928307e-02, 2.7000e-01, 2.2540e-03, - 2DIAGNOSTIC, 24, -6.296439461111e-01, 7.413563063330e-03, 2.7249e-01, 2.4900e-03, - 2DIAGNOSTIC, 25, -6.301151790084e-01, 5.125896558011e-03, 2.7469e-01, 2.1939e-03, - 2DIAGNOSTIC, 26, -6.306825809217e-01, 3.845909403665e-03, 2.7749e-01, 2.8031e-03, - 2DIAGNOSTIC, 27, -6.313440303356e-01, 2.393936427151e-03, 2.7993e-01, 2.4369e-03, - 2DIAGNOSTIC, 28, -6.321921746636e-01, 9.350617267840e-04, 2.8242e-01, 2.4920e-03, - 2DIAGNOSTIC, 29, -6.325612304023e-01, 3.480190011295e-04, 2.8487e-01, 2.4540e-03, - 2DIAGNOSTIC, 30, -6.326128011166e-01, 2.517419376952e-04, 2.8709e-01, 2.2120e-03, - 2DIAGNOSTIC, 31, -6.326542810221e-01, 2.021399542495e-04, 2.8930e-01, 2.2149e-03, - 2DIAGNOSTIC, 32, -6.326800839786e-01, 1.673922547499e-04, 2.9177e-01, 2.4660e-03, - 2DIAGNOSTIC, 33, -6.328736737718e-01, 1.260163050119e-04, 2.9404e-01, 2.2690e-03, - 2DIAGNOSTIC, 34, -6.332856781446e-01, 1.012945163982e-04, 2.9716e-01, 3.1240e-03, - 2DIAGNOSTIC, 35, -6.337504146781e-01, 8.321441136667e-05, 2.9971e-01, 2.5539e-03, - 2DIAGNOSTIC, 36, -6.337795625804e-01, 6.736989442209e-05, 3.0198e-01, 2.2681e-03, - 2DIAGNOSTIC, 37, -6.337945563432e-01, 5.593855116100e-05, 3.0421e-01, 2.2259e-03, - 2DIAGNOSTIC, 38, -6.338755097764e-01, 5.295764414812e-05, 3.0673e-01, 2.5210e-03, - 2DIAGNOSTIC, 39, -6.339770580687e-01, 5.147137419654e-05, 3.0902e-01, 2.2869e-03, - 2DIAGNOSTIC, 40, -6.343088727505e-01, 5.022045763402e-05, 3.1138e-01, 2.3651e-03, - 2DIAGNOSTIC, 41, -6.346806251033e-01, 4.964440658088e-05, 3.1404e-01, 2.6619e-03, - 2DIAGNOSTIC, 42, -6.350558104431e-01, 4.948069654320e-05, 3.1664e-01, 2.5928e-03, - 2DIAGNOSTIC, 43, -6.352552714265e-01, 4.936599030185e-05, 3.2105e-01, 4.4169e-03, - 2DIAGNOSTIC, 44, -6.352924689856e-01, 4.981069654049e-05, 3.2362e-01, 2.5630e-03, - 2DIAGNOSTIC, 45, -6.353714273331e-01, 5.182859076537e-05, 3.2585e-01, 2.2349e-03, - 2DIAGNOSTIC, 46, -6.353953780323e-01, 4.941695768013e-05, 3.2844e-01, 2.5890e-03, - 2DIAGNOSTIC, 47, -6.354452776188e-01, 4.315783112603e-05, 3.3077e-01, 2.3291e-03, - 2DIAGNOSTIC, 48, -6.354346664549e-01, 3.392797698306e-05, 3.3308e-01, 2.3081e-03, - 2DIAGNOSTIC, 49, -6.355415803207e-01, 2.414157576300e-05, 3.3553e-01, 2.4529e-03, - 2DIAGNOSTIC, 50, -6.356087281451e-01, 1.656173044024e-05, 3.3794e-01, 2.4111e-03, - 2DIAGNOSTIC, 51, -6.357501829167e-01, 1.282555375650e-05, 3.4036e-01, 2.4199e-03, - 2DIAGNOSTIC, 52, -6.358758051560e-01, 1.291291692649e-05, 3.4317e-01, 2.8100e-03, - 2DIAGNOSTIC, 53, -6.360394946908e-01, 1.528241117973e-05, 3.4650e-01, 3.3300e-03, - 2DIAGNOSTIC, 54, -6.360063923057e-01, 1.615480633763e-05, 3.4907e-01, 2.5721e-03, - 2DIAGNOSTIC, 55, -6.360065502460e-01, 1.625538790346e-05, 3.5149e-01, 2.4202e-03, - 2DIAGNOSTIC, 56, -6.362629055564e-01, 1.736331461658e-05, 3.5482e-01, 3.3309e-03, - 2DIAGNOSTIC, 57, -6.362987395566e-01, 1.750315859985e-05, 3.5751e-01, 2.6898e-03, - 2DIAGNOSTIC, 58, -6.364564873098e-01, 1.727822408061e-05, 3.5993e-01, 2.4109e-03, - 2DIAGNOSTIC, 59, -6.365698362654e-01, 1.734105546340e-05, 3.6291e-01, 2.9871e-03, - 2DIAGNOSTIC, 60, -6.366267022810e-01, 1.681165406180e-05, 3.6556e-01, 2.6519e-03, - 2DIAGNOSTIC, 61, -6.366759319356e-01, 1.626240173466e-05, 3.6783e-01, 2.2700e-03, - 2DIAGNOSTIC, 62, -6.367419019129e-01, 1.571041188825e-05, 3.7043e-01, 2.5930e-03, - 2DIAGNOSTIC, 63, -6.369860703902e-01, 1.694109216419e-05, 3.7364e-01, 3.2132e-03, - 2DIAGNOSTIC, 64, -6.370440480594e-01, 1.671247090220e-05, 3.7624e-01, 2.5971e-03, - 2DIAGNOSTIC, 65, -6.369660558149e-01, 1.431967060747e-05, 3.7855e-01, 2.3129e-03, - 2DIAGNOSTIC, 66, -6.369522496560e-01, 1.255497344139e-05, 3.8155e-01, 3.0022e-03, - 2DIAGNOSTIC, 67, -6.370128726502e-01, 1.037027832521e-05, 3.8528e-01, 3.7251e-03, - 2DIAGNOSTIC, 68, -6.369941755554e-01, 8.244588432665e-06, 3.8777e-01, 2.4910e-03, - 2DIAGNOSTIC, 69, -6.369983193048e-01, 6.274195438912e-06, 3.9021e-01, 2.4400e-03, - 2DIAGNOSTIC, 70, -6.370827893207e-01, 4.835446021825e-06, 3.9267e-01, 2.4662e-03, - 2DIAGNOSTIC, 71, -6.372662578368e-01, 4.624089199202e-06, 3.9777e-01, 5.0981e-03, - 2DIAGNOSTIC, 72, -6.373336247366e-01, 4.839971873123e-06, 4.0020e-01, 2.4250e-03, - 2DIAGNOSTIC, 73, -6.373541669083e-01, 6.391459753612e-06, 4.0260e-01, 2.3980e-03, - 2DIAGNOSTIC, 74, -6.373891636173e-01, 7.978509124569e-06, 4.0501e-01, 2.4190e-03, - 2DIAGNOSTIC, 75, -6.374494616125e-01, 8.674479295657e-06, 4.0748e-01, 2.4631e-03, - 2DIAGNOSTIC, 76, -6.376398654990e-01, 9.646382002076e-06, 4.1082e-01, 3.3431e-03, - 2DIAGNOSTIC, 77, -6.376575449691e-01, 1.017250213640e-05, 4.1352e-01, 2.7020e-03, - 2DIAGNOSTIC, 78, -6.376299855009e-01, 9.495496789396e-06, 4.1647e-01, 2.9478e-03, - 2DIAGNOSTIC, 79, -6.376140813462e-01, 7.916917353549e-06, 4.1878e-01, 2.3060e-03, - 2DIAGNOSTIC, 80, -6.376877417620e-01, 6.582240868483e-06, 4.2106e-01, 2.2881e-03, - 2DIAGNOSTIC, 81, -6.376420238621e-01, 5.467827810291e-06, 4.2334e-01, 2.2740e-03, - 2DIAGNOSTIC, 82, -6.376048923616e-01, 4.085097669266e-06, 4.2595e-01, 2.6140e-03, - 2DIAGNOSTIC, 83, -6.376234159929e-01, 2.640713184456e-06, 4.2828e-01, 2.3301e-03, - 2DIAGNOSTIC, 84, -6.376537198688e-01, 1.388770965196e-06, 4.3131e-01, 3.0260e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.860825622597e-01, 1.797693134862e+308, 4.9235e-01, 6.1039e-02, - 2DIAGNOSTIC, 2, -4.864901941488e-01, 1.797693134862e+308, 5.0489e-01, 1.2544e-02, - 2DIAGNOSTIC, 3, -4.870310668571e-01, 1.797693134862e+308, 5.1571e-01, 1.0816e-02, - 2DIAGNOSTIC, 4, -4.875180599146e-01, 1.797693134862e+308, 5.2712e-01, 1.1407e-02, - 2DIAGNOSTIC, 5, -4.881048318322e-01, 1.797693134862e+308, 5.3826e-01, 1.1149e-02, - 2DIAGNOSTIC, 6, -4.890828340598e-01, 1.797693134862e+308, 5.5062e-01, 1.2353e-02, - 2DIAGNOSTIC, 7, -4.894041923017e-01, 1.797693134862e+308, 5.6241e-01, 1.1788e-02, - 2DIAGNOSTIC, 8, -4.902057621084e-01, 1.797693134862e+308, 5.7534e-01, 1.2935e-02, - 2DIAGNOSTIC, 9, -4.907042586066e-01, 1.797693134862e+308, 5.8820e-01, 1.2856e-02, - 2DIAGNOSTIC, 10, -4.908768691474e-01, 6.865479338835e-04, 6.0586e-01, 1.7667e-02, - 2DIAGNOSTIC, 11, -4.915934082726e-01, 6.230960493833e-04, 6.2138e-01, 1.5520e-02, - 2DIAGNOSTIC, 12, -4.917013583264e-01, 5.385619692356e-04, 6.3333e-01, 1.1943e-02, - 2DIAGNOSTIC, 13, -4.922514888629e-01, 4.674758578179e-04, 6.4521e-01, 1.1884e-02, - 2DIAGNOSTIC, 14, -4.930695556920e-01, 4.178469929539e-04, 6.5872e-01, 1.3510e-02, - 2DIAGNOSTIC, 15, -4.942374425469e-01, 4.034686119810e-04, 6.7221e-01, 1.3494e-02, - 2DIAGNOSTIC, 16, -4.944703174928e-01, 3.972955725761e-04, 6.8933e-01, 1.7114e-02, - 2DIAGNOSTIC, 17, -4.945206509204e-01, 3.681502252489e-04, 7.0161e-01, 1.2278e-02, - 2DIAGNOSTIC, 18, -4.945978858121e-01, 3.369541533011e-04, 7.1490e-01, 1.3294e-02, - 2DIAGNOSTIC, 19, -4.946658692073e-01, 2.948960356875e-04, 7.2630e-01, 1.1403e-02, - 2DIAGNOSTIC, 20, -4.947329431245e-01, 2.357858203437e-04, 7.3727e-01, 1.0971e-02, - 2DIAGNOSTIC, 21, -4.951534117157e-01, 1.920885511424e-04, 7.5224e-01, 1.4961e-02, - 2DIAGNOSTIC, 22, -4.953569255219e-01, 1.428188058099e-04, 7.7045e-01, 1.8216e-02, - 2DIAGNOSTIC, 23, -4.953611532574e-01, 9.840255320324e-05, 7.8393e-01, 1.3483e-02, - 2DIAGNOSTIC, 24, -4.954032111719e-01, 6.879701516331e-05, 7.9886e-01, 1.4930e-02, - 2DIAGNOSTIC, 25, -4.954129103530e-01, 6.232812531867e-05, 8.1303e-01, 1.4163e-02, - 2DIAGNOSTIC, 26, -4.954101141287e-01, 5.557116916887e-05, 8.2682e-01, 1.3797e-02, - 2DIAGNOSTIC, 27, -4.954125553518e-01, 4.523449803522e-05, 8.3779e-01, 1.0967e-02, - 2DIAGNOSTIC, 28, -4.954281323763e-01, 3.349914002557e-05, 8.4792e-01, 1.0129e-02, - 2DIAGNOSTIC, 29, -4.954323797230e-01, 2.106494616140e-05, 8.6077e-01, 1.2848e-02, - 2DIAGNOSTIC, 30, -4.954317618600e-01, 8.668520268942e-06, 8.7238e-01, 1.1610e-02, - 2DIAGNOSTIC, 31, -4.954339765282e-01, 4.134950055176e-06, 8.8254e-01, 1.0160e-02, - 2DIAGNOSTIC, 32, -4.954331117491e-01, 3.253613015682e-06, 8.9268e-01, 1.0139e-02, - 2DIAGNOSTIC, 33, -4.954385599586e-01, 2.357182039121e-06, 9.0290e-01, 1.0224e-02, - 2DIAGNOSTIC, 34, -4.954515005898e-01, 2.305821288164e-06, 9.1428e-01, 1.1379e-02, - 2DIAGNOSTIC, 35, -4.954546832482e-01, 2.340421606250e-06, 9.2482e-01, 1.0544e-02, - 2DIAGNOSTIC, 36, -4.954710699445e-01, 2.459982304876e-06, 9.3544e-01, 1.0614e-02, - 2DIAGNOSTIC, 37, -4.955024005947e-01, 2.939606965072e-06, 9.4605e-01, 1.0612e-02, - 2DIAGNOSTIC, 38, -4.955907018451e-01, 4.758332333526e-06, 9.5632e-01, 1.0270e-02, - 2DIAGNOSTIC, 39, -4.960756432856e-01, 1.330664943073e-05, 9.6774e-01, 1.1417e-02, - 2DIAGNOSTIC, 40, -4.960915539666e-01, 2.027546447209e-05, 9.8321e-01, 1.5475e-02, - 2DIAGNOSTIC, 41, -4.961049991698e-01, 2.535855209228e-05, 9.9477e-01, 1.1559e-02, - 2DIAGNOSTIC, 42, -4.961003685753e-01, 2.787012005090e-05, 1.0055e+00, 1.0774e-02, - 2DIAGNOSTIC, 43, -4.961521465653e-01, 2.840152708822e-05, 1.0176e+00, 1.2092e-02, - 2DIAGNOSTIC, 44, -4.961896385230e-01, 2.680377271506e-05, 1.0283e+00, 1.0623e-02, - 2DIAGNOSTIC, 45, -4.961999242247e-01, 2.293910118884e-05, 1.0403e+00, 1.2057e-02, - 2DIAGNOSTIC, 46, -4.962038851304e-01, 1.748145383457e-05, 1.0521e+00, 1.1761e-02, - 2DIAGNOSTIC, 47, -4.962029542752e-01, 1.107205737777e-05, 1.0633e+00, 1.1238e-02, - 2DIAGNOSTIC, 48, -4.962129240143e-01, 4.943368907346e-06, 1.0738e+00, 1.0468e-02, - 2DIAGNOSTIC, 49, -4.962655729852e-01, 4.953423498575e-06, 1.0847e+00, 1.0943e-02, - 2DIAGNOSTIC, 50, -4.963789165199e-01, 6.023149205853e-06, 1.0960e+00, 1.1235e-02, - 2DIAGNOSTIC, 51, -4.967651186188e-01, 1.103000920150e-05, 1.1090e+00, 1.3072e-02, - 2DIAGNOSTIC, 52, -4.968513587723e-01, 1.564061415068e-05, 1.1250e+00, 1.5917e-02, - 2DIAGNOSTIC, 53, -4.968869108439e-01, 1.961249010182e-05, 1.1351e+00, 1.0159e-02, - 2DIAGNOSTIC, 54, -4.969733716874e-01, 2.298204814697e-05, 1.1472e+00, 1.2073e-02, - 2DIAGNOSTIC, 55, -4.970269212433e-01, 2.470229864137e-05, 1.1589e+00, 1.1749e-02, - 2DIAGNOSTIC, 56, -4.970361409380e-01, 2.411576246249e-05, 1.1694e+00, 1.0437e-02, - 2DIAGNOSTIC, 57, -4.970454103649e-01, 2.138121544065e-05, 1.1811e+00, 1.1689e-02, - 2DIAGNOSTIC, 58, -4.970679843783e-01, 1.711865206767e-05, 1.1916e+00, 1.0514e-02, - 2DIAGNOSTIC, 59, -4.970976434667e-01, 1.221671227812e-05, 1.2021e+00, 1.0499e-02, - 2DIAGNOSTIC, 60, -4.971512878170e-01, 7.849400823354e-06, 1.2121e+00, 1.0040e-02, - 2DIAGNOSTIC, 61, -4.974431853181e-01, 9.294704990146e-06, 1.2235e+00, 1.1364e-02, - 2DIAGNOSTIC, 62, -4.975358633019e-01, 1.144656990574e-05, 1.2377e+00, 1.4222e-02, - 2DIAGNOSTIC, 63, -4.976039198633e-01, 1.341840556060e-05, 1.2477e+00, 9.9621e-03, - 2DIAGNOSTIC, 64, -4.976454677369e-01, 1.525135973929e-05, 1.2576e+00, 9.9759e-03, - 2DIAGNOSTIC, 65, -4.977991891829e-01, 1.743240881195e-05, 1.2691e+00, 1.1497e-02, - 2DIAGNOSTIC, 66, -4.980366948891e-01, 1.999511609948e-05, 1.2818e+00, 1.2681e-02, - 2DIAGNOSTIC, 67, -4.981690348178e-01, 2.175861034708e-05, 1.2954e+00, 1.3561e-02, - 2DIAGNOSTIC, 68, -4.981994581953e-01, 2.190467004408e-05, 1.3095e+00, 1.4096e-02, - 2DIAGNOSTIC, 69, -4.982144583942e-01, 2.040677794788e-05, 1.3238e+00, 1.4338e-02, - 2DIAGNOSTIC, 70, -4.982192482833e-01, 1.744561657566e-05, 1.3357e+00, 1.1862e-02, - 2DIAGNOSTIC, 71, -4.982142937454e-01, 1.520494214540e-05, 1.3462e+00, 1.0522e-02, - 2DIAGNOSTIC, 72, -4.982188844919e-01, 1.236576128330e-05, 1.3581e+00, 1.1869e-02, - 2DIAGNOSTIC, 73, -4.982303401088e-01, 9.106626083711e-06, 1.3692e+00, 1.1132e-02, - 2DIAGNOSTIC, 74, -4.982269536626e-01, 5.394889798576e-06, 1.3803e+00, 1.1121e-02, - 2DIAGNOSTIC, 75, -4.982407443544e-01, 2.551329438452e-06, 1.3907e+00, 1.0344e-02, - 2DIAGNOSTIC, 76, -4.982519638522e-01, 1.430945326545e-06, 1.4010e+00, 1.0316e-02, - 2DIAGNOSTIC, 77, -4.982751985879e-01, 1.395080445060e-06, 1.4116e+00, 1.0635e-02, - 2DIAGNOSTIC, 78, -4.983090185459e-01, 1.731214508877e-06, 1.4218e+00, 1.0180e-02, - 2DIAGNOSTIC, 79, -4.983851238958e-01, 2.588159593198e-06, 1.4319e+00, 1.0077e-02, - 2DIAGNOSTIC, 80, -4.984982886432e-01, 4.049597787154e-06, 1.4421e+00, 1.0201e-02, - 2DIAGNOSTIC, 81, -4.986969705660e-01, 6.479146225431e-06, 1.4599e+00, 1.7799e-02, - 2DIAGNOSTIC, 82, -4.988921413282e-01, 9.632289011593e-06, 1.4704e+00, 1.0554e-02, - 2DIAGNOSTIC, 83, -4.990325258803e-01, 1.285253479230e-05, 1.4820e+00, 1.1593e-02, - 2DIAGNOSTIC, 84, -4.994454721619e-01, 1.758620939288e-05, 1.4938e+00, 1.1752e-02, - 2DIAGNOSTIC, 85, -4.995852789128e-01, 2.151776863623e-05, 1.5054e+00, 1.1677e-02, - 2DIAGNOSTIC, 86, -4.997805707474e-01, 2.468869741005e-05, 1.5163e+00, 1.0872e-02, - 2DIAGNOSTIC, 87, -5.000004360443e-01, 2.703770676754e-05, 1.5296e+00, 1.3268e-02, - 2DIAGNOSTIC, 88, -5.002056170899e-01, 2.828581232235e-05, 1.5415e+00, 1.1944e-02, - 2DIAGNOSTIC, 89, -5.008768045704e-01, 3.158175989893e-05, 1.5534e+00, 1.1914e-02, - 2DIAGNOSTIC, 90, -5.011622514607e-01, 3.420267374821e-05, 1.5650e+00, 1.1587e-02, - 2DIAGNOSTIC, 91, -5.012911118245e-01, 3.556351983116e-05, 1.5772e+00, 1.2215e-02, - 2DIAGNOSTIC, 92, -5.014422604614e-01, 3.569961668876e-05, 1.5921e+00, 1.4837e-02, - 2DIAGNOSTIC, 93, -5.014770537435e-01, 3.341852893308e-05, 1.6027e+00, 1.0656e-02, - 2DIAGNOSTIC, 94, -5.014920857488e-01, 3.054426010628e-05, 1.6162e+00, 1.3419e-02, - 2DIAGNOSTIC, 95, -5.014992637621e-01, 2.566473945435e-05, 1.6283e+00, 1.2099e-02, - 2DIAGNOSTIC, 96, -5.015015807061e-01, 1.963879963405e-05, 1.6388e+00, 1.0526e-02, - 2DIAGNOSTIC, 97, -5.014957987162e-01, 1.315741264279e-05, 1.6489e+00, 1.0160e-02, - 2DIAGNOSTIC, 98, -5.015027295937e-01, 6.722235487167e-06, 1.6608e+00, 1.1883e-02, - 2DIAGNOSTIC, 99, -5.015206628765e-01, 3.757546568995e-06, 1.6729e+00, 1.2100e-02, - 2DIAGNOSTIC, 100, -5.015327227890e-01, 2.212281138260e-06, 1.6835e+00, 1.0623e-02, - 2DIAGNOSTIC, 101, -5.015411909687e-01, 1.272119565819e-06, 1.6941e+00, 1.0519e-02, - 2DIAGNOSTIC, 102, -5.016081056967e-01, 1.479547085164e-06, 1.7074e+00, 1.3335e-02, - 2DIAGNOSTIC, 103, -5.016327296772e-01, 1.888726514807e-06, 1.7178e+00, 1.0449e-02, - 2DIAGNOSTIC, 104, -5.016525313063e-01, 2.326684036968e-06, 1.7299e+00, 1.2039e-02, - 2DIAGNOSTIC, 105, -5.017663426319e-01, 3.222851528187e-06, 1.7498e+00, 1.9910e-02, - 2DIAGNOSTIC, 106, -5.017732932016e-01, 3.855808034667e-06, 1.7614e+00, 1.1577e-02, - 2DIAGNOSTIC, 107, -5.017718224212e-01, 4.096243723972e-06, 1.7718e+00, 1.0430e-02, - 2DIAGNOSTIC, 108, -5.017653640160e-01, 3.972200721918e-06, 1.7835e+00, 1.1693e-02, - 2DIAGNOSTIC, 109, -5.017753846395e-01, 3.642484249056e-06, 1.7952e+00, 1.1706e-02, - 2DIAGNOSTIC, 110, -5.017676035617e-01, 3.009119760358e-06, 1.8059e+00, 1.0685e-02, - 2DIAGNOSTIC, 111, -5.017738779374e-01, 2.191639910968e-06, 1.8165e+00, 1.0649e-02, - 2DIAGNOSTIC, 112, -5.017781955280e-01, 1.574896171273e-06, 1.8276e+00, 1.1067e-02, - 2DIAGNOSTIC, 113, -5.017870477439e-01, 1.017863597352e-06, 1.8383e+00, 1.0738e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.186024821544e-01, 1.797693134862e+308, 2.0184e+00, 1.8005e-01, - Elapsed time (stage 0): 2.0481e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.477362814163e-01, 1.797693134862e+308, 3.3648e-02, 3.3648e-02, - 2DIAGNOSTIC, 2, -9.514777364631e-01, 1.797693134862e+308, 3.4767e-02, 1.1189e-03, - 2DIAGNOSTIC, 3, -9.585542635248e-01, 1.797693134862e+308, 3.5876e-02, 1.1089e-03, - 2DIAGNOSTIC, 4, -9.690744452792e-01, 1.797693134862e+308, 3.6994e-02, 1.1182e-03, - 2DIAGNOSTIC, 5, -9.813570196668e-01, 1.797693134862e+308, 3.8130e-02, 1.1361e-03, - 2DIAGNOSTIC, 6, -9.990528673814e-01, 1.797693134862e+308, 3.9285e-02, 1.1549e-03, - 2DIAGNOSTIC, 7, -1.035531366028e+00, 1.797693134862e+308, 4.1070e-02, 1.7848e-03, - 2DIAGNOSTIC, 8, -1.040797962746e+00, 1.797693134862e+308, 4.2455e-02, 1.3850e-03, - 2DIAGNOSTIC, 9, -1.047364156564e+00, 1.797693134862e+308, 4.3589e-02, 1.1339e-03, - 2DIAGNOSTIC, 10, -1.058350556652e+00, 8.142378056942e-03, 4.5132e-02, 1.5430e-03, - 2DIAGNOSTIC, 11, -1.073099559742e+00, 7.647422612960e-03, 4.6674e-02, 1.5421e-03, - 2DIAGNOSTIC, 12, -1.106881617228e+00, 7.398753372721e-03, 4.9291e-02, 2.6171e-03, - 2DIAGNOSTIC, 13, -1.105308657696e+00, 6.631513021509e-03, 5.0628e-02, 1.3371e-03, - 2DIAGNOSTIC, 14, -1.109478370166e+00, 5.691634641305e-03, 5.2154e-02, 1.5259e-03, - 2DIAGNOSTIC, 15, -1.111364614946e+00, 4.632097097426e-03, 5.3499e-02, 1.3449e-03, - 2DIAGNOSTIC, 16, -1.112987931273e+00, 3.599459571908e-03, 5.4856e-02, 1.3571e-03, - 2DIAGNOSTIC, 17, -1.118379256847e+00, 3.029826655959e-03, 5.6183e-02, 1.3270e-03, - 2DIAGNOSTIC, 18, -1.123406696969e+00, 2.403282645040e-03, 5.7591e-02, 1.4081e-03, - 2DIAGNOSTIC, 19, -1.128989811650e+00, 1.802030267840e-03, 5.9206e-02, 1.6150e-03, - 2DIAGNOSTIC, 20, -1.132751835230e+00, 1.295339556940e-03, 6.0853e-02, 1.6470e-03, - 2DIAGNOSTIC, 21, -1.141329368990e+00, 1.005877700307e-03, 6.3683e-02, 2.8300e-03, - 2DIAGNOSTIC, 22, -1.141761775983e+00, 1.065656058010e-03, 6.5254e-02, 1.5709e-03, - 2DIAGNOSTIC, 23, -1.142296171568e+00, 1.008064468406e-03, 6.6846e-02, 1.5919e-03, - 2DIAGNOSTIC, 24, -1.142921678736e+00, 9.151842991468e-04, 6.8326e-02, 1.4799e-03, - 2DIAGNOSTIC, 25, -1.142658829943e+00, 7.616363165563e-04, 7.0188e-02, 1.8618e-03, - 2DIAGNOSTIC, 26, -1.144297911884e+00, 5.810093959250e-04, 7.1965e-02, 1.7779e-03, - 2DIAGNOSTIC, 27, -1.145567876570e+00, 4.241747948625e-04, 7.3505e-02, 1.5399e-03, - 2DIAGNOSTIC, 28, -1.149276207321e+00, 3.213439317301e-04, 7.4995e-02, 1.4899e-03, - 2DIAGNOSTIC, 29, -1.152910582544e+00, 2.785748697912e-04, 7.6769e-02, 1.7738e-03, - 2DIAGNOSTIC, 30, -1.154513640539e+00, 2.570680950938e-04, 7.8525e-02, 1.7560e-03, - 2DIAGNOSTIC, 31, -1.155819763592e+00, 2.964015465640e-04, 8.0020e-02, 1.4951e-03, - 2DIAGNOSTIC, 32, -1.156097694907e+00, 3.108832629359e-04, 8.1671e-02, 1.6510e-03, - 2DIAGNOSTIC, 33, -1.156235101635e+00, 3.000718988286e-04, 8.3071e-02, 1.4000e-03, - 2DIAGNOSTIC, 34, -1.156901009763e+00, 2.713573800004e-04, 8.4651e-02, 1.5800e-03, - 2DIAGNOSTIC, 35, -1.160255790951e+00, 2.413980003251e-04, 8.6895e-02, 2.2440e-03, - 2DIAGNOSTIC, 36, -1.160298235415e+00, 2.021246525214e-04, 8.8493e-02, 1.5981e-03, - 2DIAGNOSTIC, 37, -1.158430864120e+00, 1.418312528607e-04, 9.0116e-02, 1.6229e-03, - 2DIAGNOSTIC, 38, -1.157313036322e+00, 8.934295492896e-05, 9.1465e-02, 1.3492e-03, - 2DIAGNOSTIC, 39, -1.157905454574e+00, 5.894084759803e-05, 9.2826e-02, 1.3609e-03, - 2DIAGNOSTIC, 40, -1.158441087833e+00, 3.739090217955e-05, 9.4173e-02, 1.3471e-03, - 2DIAGNOSTIC, 41, -1.160252716368e+00, 3.283849797524e-05, 9.5537e-02, 1.3640e-03, - 2DIAGNOSTIC, 42, -1.160890051986e+00, 3.141532559151e-05, 9.6940e-02, 1.4021e-03, - 2DIAGNOSTIC, 43, -1.163008920088e+00, 4.094661291040e-05, 9.8269e-02, 1.3292e-03, - 2DIAGNOSTIC, 44, -1.165323377561e+00, 6.262737415620e-05, 1.0031e-01, 2.0370e-03, - 2DIAGNOSTIC, 45, -1.165705955079e+00, 9.813156004284e-05, 1.0206e-01, 1.7569e-03, - 2DIAGNOSTIC, 46, -1.165968979152e+00, 1.247732885407e-04, 1.0341e-01, 1.3459e-03, - 2DIAGNOSTIC, 47, -1.166281195394e+00, 1.302217579688e-04, 1.0476e-01, 1.3480e-03, - 2DIAGNOSTIC, 48, -1.166594303471e+00, 1.186162812849e-04, 1.0734e-01, 2.5790e-03, - 2DIAGNOSTIC, 49, -1.166736779205e+00, 9.987240117870e-05, 1.0927e-01, 1.9369e-03, - 2DIAGNOSTIC, 50, -1.167013331676e+00, 7.644210498134e-05, 1.1142e-01, 2.1482e-03, - 2DIAGNOSTIC, 51, -1.167159052174e+00, 5.666158508030e-05, 1.1380e-01, 2.3839e-03, - 2DIAGNOSTIC, 52, -1.167273377007e+00, 3.582252143068e-05, 1.1563e-01, 1.8241e-03, - 2DIAGNOSTIC, 53, -1.167420057021e+00, 2.299423421951e-05, 1.1745e-01, 1.8198e-03, - 2DIAGNOSTIC, 54, -1.167610395977e+00, 2.025271240377e-05, 1.1964e-01, 2.1920e-03, - 2DIAGNOSTIC, 55, -1.166362757405e+00, 1.171309923929e-05, 1.2099e-01, 1.3509e-03, - 2DIAGNOSTIC, 56, -1.166619462159e+00, 4.928203131974e-06, 1.2261e-01, 1.6201e-03, - 2DIAGNOSTIC, 57, -1.167020810456e+00, 1.033510588666e-06, 1.2400e-01, 1.3871e-03, - 2DIAGNOSTIC, 58, -1.171986635323e+00, 2.013374038375e-05, 1.2596e-01, 1.9650e-03, - 2DIAGNOSTIC, 59, -1.175029721748e+00, 4.974569703700e-05, 1.2756e-01, 1.6010e-03, - 2DIAGNOSTIC, 60, -1.176177459952e+00, 7.958872454047e-05, 1.2894e-01, 1.3790e-03, - 2DIAGNOSTIC, 61, -1.182680685650e+00, 1.286713265032e-04, 1.3069e-01, 1.7469e-03, - 2DIAGNOSTIC, 62, -1.183431191656e+00, 1.665914637733e-04, 1.3220e-01, 1.5130e-03, - 2DIAGNOSTIC, 63, -1.183153824336e+00, 1.866041549467e-04, 1.3353e-01, 1.3301e-03, - 2DIAGNOSTIC, 64, -1.183120950448e+00, 1.890483273779e-04, 1.3503e-01, 1.4989e-03, - 2DIAGNOSTIC, 65, -1.183969733390e+00, 1.718514081138e-04, 1.3657e-01, 1.5402e-03, - 2DIAGNOSTIC, 66, -1.184937886624e+00, 1.431892526302e-04, 1.3806e-01, 1.4870e-03, - 2DIAGNOSTIC, 67, -1.186091906953e+00, 1.069879609642e-04, 1.3957e-01, 1.5121e-03, - 2DIAGNOSTIC, 68, -1.186564778455e+00, 8.183080310280e-05, 1.4108e-01, 1.5070e-03, - 2DIAGNOSTIC, 69, -1.187661495821e+00, 6.491959759192e-05, 1.4280e-01, 1.7259e-03, - 2DIAGNOSTIC, 70, -1.187956428999e+00, 4.673366204298e-05, 1.4417e-01, 1.3700e-03, - 2DIAGNOSTIC, 71, -1.188170400447e+00, 4.820444517635e-05, 1.4571e-01, 1.5328e-03, - 2DIAGNOSTIC, 72, -1.188354213206e+00, 4.832180284470e-05, 1.4727e-01, 1.5619e-03, - 2DIAGNOSTIC, 73, -1.189495737830e+00, 4.682664862388e-05, 1.4905e-01, 1.7800e-03, - 2DIAGNOSTIC, 74, -1.189674382074e+00, 4.125222402620e-05, 1.5063e-01, 1.5841e-03, - 2DIAGNOSTIC, 75, -1.190009707795e+00, 3.582915529697e-05, 1.5204e-01, 1.4091e-03, - 2DIAGNOSTIC, 76, -1.188935938302e+00, 2.678277513165e-05, 1.5339e-01, 1.3440e-03, - 2DIAGNOSTIC, 77, -1.189095050922e+00, 1.980708804697e-05, 1.5472e-01, 1.3311e-03, - 2DIAGNOSTIC, 78, -1.189223319406e+00, 1.288867232367e-05, 1.5618e-01, 1.4591e-03, - 2DIAGNOSTIC, 79, -1.189351543673e+00, 8.719652637290e-06, 1.5778e-01, 1.6010e-03, - 2DIAGNOSTIC, 80, -1.190764283172e+00, 9.217938580934e-06, 1.5964e-01, 1.8589e-03, - 2DIAGNOSTIC, 81, -1.192121328111e+00, 1.365615444023e-05, 1.6100e-01, 1.3630e-03, - 2DIAGNOSTIC, 82, -1.192199489880e+00, 1.736404629613e-05, 1.6255e-01, 1.5512e-03, - 2DIAGNOSTIC, 83, -1.192220467967e+00, 2.287145880210e-05, 1.6389e-01, 1.3349e-03, - 2DIAGNOSTIC, 84, -1.190926201618e+00, 2.275270617232e-05, 1.6523e-01, 1.3471e-03, - 2DIAGNOSTIC, 85, -1.190940118656e+00, 2.162646620181e-05, 1.6699e-01, 1.7550e-03, - 2DIAGNOSTIC, 86, -1.190950249896e+00, 1.527243952741e-05, 1.6896e-01, 1.9732e-03, - 2DIAGNOSTIC, 87, -1.190953597345e+00, 8.075913584767e-06, 1.7031e-01, 1.3530e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.742657717010e-01, 1.797693134862e+308, 2.1474e-01, 4.4426e-02, - 2DIAGNOSTIC, 2, -7.735912571093e-01, 1.797693134862e+308, 2.1777e-01, 3.0339e-03, - 2DIAGNOSTIC, 3, -7.745475704238e-01, 1.797693134862e+308, 2.2080e-01, 3.0310e-03, - 2DIAGNOSTIC, 4, -7.757426913454e-01, 1.797693134862e+308, 2.2405e-01, 3.2430e-03, - 2DIAGNOSTIC, 5, -7.774363447666e-01, 1.797693134862e+308, 2.2680e-01, 2.7542e-03, - 2DIAGNOSTIC, 6, -7.792474343104e-01, 1.797693134862e+308, 2.3011e-01, 3.3128e-03, - 2DIAGNOSTIC, 7, -7.805990126043e-01, 1.797693134862e+308, 2.3465e-01, 4.5381e-03, - 2DIAGNOSTIC, 8, -7.805741396568e-01, 1.797693134862e+308, 2.3703e-01, 2.3780e-03, - 2DIAGNOSTIC, 9, -7.816872595613e-01, 1.797693134862e+308, 2.3952e-01, 2.4891e-03, - 2DIAGNOSTIC, 10, -7.832979517005e-01, 8.397195730866e-04, 2.4209e-01, 2.5671e-03, - 2DIAGNOSTIC, 11, -7.841050033832e-01, 7.999367493201e-04, 2.4499e-01, 2.8980e-03, - 2DIAGNOSTIC, 12, -7.849816458615e-01, 7.014682526190e-04, 2.4798e-01, 2.9981e-03, - 2DIAGNOSTIC, 13, -7.866327633985e-01, 6.287048722468e-04, 2.5093e-01, 2.9440e-03, - 2DIAGNOSTIC, 14, -7.899092446314e-01, 6.243534090423e-04, 2.5467e-01, 3.7451e-03, - 2DIAGNOSTIC, 15, -7.911569689821e-01, 6.319723583548e-04, 2.5783e-01, 3.1600e-03, - 2DIAGNOSTIC, 16, -7.919373599734e-01, 6.394567624686e-04, 2.6093e-01, 3.1009e-03, - 2DIAGNOSTIC, 17, -7.923872896058e-01, 6.272156143098e-04, 2.6375e-01, 2.8181e-03, - 2DIAGNOSTIC, 18, -7.926411992341e-01, 5.627081563797e-04, 2.6741e-01, 3.6581e-03, - 2DIAGNOSTIC, 19, -7.929599500577e-01, 4.789707236418e-04, 2.7113e-01, 3.7251e-03, - 2DIAGNOSTIC, 20, -7.929817346321e-01, 3.885914652816e-04, 2.7392e-01, 2.7831e-03, - 2DIAGNOSTIC, 21, -7.930837811353e-01, 2.871861512576e-04, 2.7639e-01, 2.4760e-03, - 2DIAGNOSTIC, 22, -7.932857788591e-01, 1.862487710211e-04, 2.7885e-01, 2.4588e-03, - 2DIAGNOSTIC, 23, -7.933509786681e-01, 1.026856447321e-04, 2.8161e-01, 2.7599e-03, - 2DIAGNOSTIC, 24, -7.936185394310e-01, 6.973783665532e-05, 2.8438e-01, 2.7630e-03, - 2DIAGNOSTIC, 25, -7.937960907541e-01, 5.338274995771e-05, 2.8713e-01, 2.7521e-03, - 2DIAGNOSTIC, 26, -7.937374224383e-01, 4.332322079151e-05, 2.8985e-01, 2.7230e-03, - 2DIAGNOSTIC, 27, -7.942246627970e-01, 4.260858873203e-05, 2.9317e-01, 3.3212e-03, - 2DIAGNOSTIC, 28, -7.944983497024e-01, 4.456434842119e-05, 2.9842e-01, 5.2438e-03, - 2DIAGNOSTIC, 29, -7.945300444472e-01, 4.659319815581e-05, 3.0170e-01, 3.2849e-03, - 2DIAGNOSTIC, 30, -7.946986798831e-01, 4.656260452888e-05, 3.0474e-01, 3.0379e-03, - 2DIAGNOSTIC, 31, -7.947756600237e-01, 4.428800760122e-05, 3.0832e-01, 3.5770e-03, - 2DIAGNOSTIC, 32, -7.948341155268e-01, 4.094578680756e-05, 3.1158e-01, 3.2630e-03, - 2DIAGNOSTIC, 33, -7.948785836463e-01, 3.509800888327e-05, 3.1409e-01, 2.5141e-03, - 2DIAGNOSTIC, 34, -7.950509633008e-01, 3.103029156717e-05, 3.1658e-01, 2.4838e-03, - 2DIAGNOSTIC, 35, -7.952631115082e-01, 2.840717217556e-05, 3.1928e-01, 2.7030e-03, - 2DIAGNOSTIC, 36, -7.954007089142e-01, 2.395139743302e-05, 3.2231e-01, 3.0351e-03, - 2DIAGNOSTIC, 37, -7.954572609196e-01, 2.279374749466e-05, 3.2505e-01, 2.7359e-03, - 2DIAGNOSTIC, 38, -7.954113573109e-01, 2.180941479871e-05, 3.2742e-01, 2.3720e-03, - 2DIAGNOSTIC, 39, -7.955098818213e-01, 2.005673006174e-05, 3.3013e-01, 2.7032e-03, - 2DIAGNOSTIC, 40, -7.956454440523e-01, 1.922487316233e-05, 3.3284e-01, 2.7120e-03, - 2DIAGNOSTIC, 41, -7.957749066096e-01, 1.844396608272e-05, 3.3580e-01, 2.9590e-03, - 2DIAGNOSTIC, 42, -7.958923090337e-01, 1.754281853768e-05, 3.3915e-01, 3.3500e-03, - 2DIAGNOSTIC, 43, -7.958418040963e-01, 1.503445098422e-05, 3.4154e-01, 2.3909e-03, - 2DIAGNOSTIC, 44, -7.958731355924e-01, 1.293674198915e-05, 3.4392e-01, 2.3880e-03, - 2DIAGNOSTIC, 45, -7.959169360371e-01, 1.175771656403e-05, 3.4630e-01, 2.3749e-03, - 2DIAGNOSTIC, 46, -7.959716841910e-01, 1.103530493188e-05, 3.4862e-01, 2.3191e-03, - 2DIAGNOSTIC, 47, -7.960135035281e-01, 1.012156375156e-05, 3.5096e-01, 2.3379e-03, - 2DIAGNOSTIC, 48, -7.963321152172e-01, 1.039531995415e-05, 3.5379e-01, 2.8331e-03, - 2DIAGNOSTIC, 49, -7.964431369174e-01, 1.119993926051e-05, 3.5717e-01, 3.3770e-03, - 2DIAGNOSTIC, 50, -7.965838165000e-01, 1.292684479504e-05, 3.6050e-01, 3.3281e-03, - 2DIAGNOSTIC, 51, -7.965971794374e-01, 1.439850624907e-05, 3.6282e-01, 2.3260e-03, - 2DIAGNOSTIC, 52, -7.966581720674e-01, 1.574965457280e-05, 3.6550e-01, 2.6782e-03, - 2DIAGNOSTIC, 53, -7.966202739664e-01, 1.496601868143e-05, 3.6797e-01, 2.4738e-03, - 2DIAGNOSTIC, 54, -7.966355568105e-01, 1.313330832426e-05, 3.7038e-01, 2.4068e-03, - 2DIAGNOSTIC, 55, -7.966668641806e-01, 1.066316016068e-05, 3.7282e-01, 2.4369e-03, - 2DIAGNOSTIC, 56, -7.968128671435e-01, 8.614741300900e-06, 3.7550e-01, 2.6820e-03, - 2DIAGNOSTIC, 57, -7.969972979508e-01, 7.228346558603e-06, 3.7778e-01, 2.2860e-03, - 2DIAGNOSTIC, 58, -7.970039526254e-01, 7.238795965085e-06, 3.8005e-01, 2.2621e-03, - 2DIAGNOSTIC, 59, -7.970946479442e-01, 7.841400253807e-06, 3.8343e-01, 3.3829e-03, - 2DIAGNOSTIC, 60, -7.971759795909e-01, 9.044736919487e-06, 3.8567e-01, 2.2390e-03, - 2DIAGNOSTIC, 61, -7.972067989671e-01, 9.612162077115e-06, 3.8796e-01, 2.2931e-03, - 2DIAGNOSTIC, 62, -7.973127795276e-01, 1.025140096568e-05, 3.9080e-01, 2.8379e-03, - 2DIAGNOSTIC, 63, -7.975551798315e-01, 1.109711760768e-05, 3.9431e-01, 3.5090e-03, - 2DIAGNOSTIC, 64, -7.975496801915e-01, 1.093400949369e-05, 3.9699e-01, 2.6801e-03, - 2DIAGNOSTIC, 65, -7.977038006600e-01, 1.080086852428e-05, 3.9933e-01, 2.3441e-03, - 2DIAGNOSTIC, 66, -7.976589805992e-01, 1.019912908674e-05, 4.0168e-01, 2.3520e-03, - 2DIAGNOSTIC, 67, -7.976139419809e-01, 9.439095039601e-06, 4.0432e-01, 2.6319e-03, - 2DIAGNOSTIC, 68, -7.976234690565e-01, 7.911101970352e-06, 4.0655e-01, 2.2359e-03, - 2DIAGNOSTIC, 69, -7.975719447274e-01, 5.897646030258e-06, 4.0878e-01, 2.2290e-03, - 2DIAGNOSTIC, 70, -7.976507087159e-01, 4.252706612166e-06, 4.1100e-01, 2.2230e-03, - 2DIAGNOSTIC, 71, -7.976771661622e-01, 2.564667783634e-06, 4.1327e-01, 2.2631e-03, - 2DIAGNOSTIC, 72, -7.978073300816e-01, 1.874675323279e-06, 4.1558e-01, 2.3100e-03, - 2DIAGNOSTIC, 73, -7.980847657816e-01, 3.615616368717e-06, 4.1885e-01, 3.2730e-03, - 2DIAGNOSTIC, 74, -7.981351268185e-01, 5.166225041875e-06, 4.2182e-01, 2.9700e-03, - 2DIAGNOSTIC, 75, -7.981766232492e-01, 7.170944223468e-06, 4.2478e-01, 2.9609e-03, - 2DIAGNOSTIC, 76, -7.981708509377e-01, 8.248478324951e-06, 4.2795e-01, 3.1679e-03, - 2DIAGNOSTIC, 77, -7.982056381026e-01, 8.487690872709e-06, 4.3046e-01, 2.5091e-03, - 2DIAGNOSTIC, 78, -7.982201913522e-01, 8.038730827806e-06, 4.3299e-01, 2.5361e-03, - 2DIAGNOSTIC, 79, -7.983144462783e-01, 7.049465777221e-06, 4.3622e-01, 3.2299e-03, - 2DIAGNOSTIC, 80, -7.985338026772e-01, 6.789776139925e-06, 4.3910e-01, 2.8799e-03, - 2DIAGNOSTIC, 81, -7.986730708044e-01, 6.631694408484e-06, 4.4147e-01, 2.3630e-03, - 2DIAGNOSTIC, 82, -7.997621253873e-01, 1.117007913007e-05, 4.4409e-01, 2.6250e-03, - 2DIAGNOSTIC, 83, -8.003968593192e-01, 1.837360026779e-05, 4.4670e-01, 2.6109e-03, - 2DIAGNOSTIC, 84, -8.007470342129e-01, 2.534814472788e-05, 4.4931e-01, 2.6081e-03, - 2DIAGNOSTIC, 85, -8.007990685750e-01, 3.018701930818e-05, 4.5204e-01, 2.7330e-03, - 2DIAGNOSTIC, 86, -8.007023772800e-01, 3.163128489751e-05, 4.5481e-01, 2.7621e-03, - 2DIAGNOSTIC, 87, -8.006940162067e-01, 3.009629644770e-05, 4.5723e-01, 2.4240e-03, - 2DIAGNOSTIC, 88, -8.005979295784e-01, 2.533348428790e-05, 4.5999e-01, 2.7621e-03, - 2DIAGNOSTIC, 89, -8.007955970339e-01, 1.946107938900e-05, 4.6238e-01, 2.3911e-03, - 2DIAGNOSTIC, 90, -8.010347362506e-01, 1.373891184987e-05, 4.6569e-01, 3.3059e-03, - 2DIAGNOSTIC, 91, -8.008322987537e-01, 6.512511136536e-06, 4.6809e-01, 2.4021e-03, - 2DIAGNOSTIC, 92, -8.008469672669e-01, 3.140522249021e-06, 4.7043e-01, 2.3351e-03, - 2DIAGNOSTIC, 93, -8.008720031006e-01, 2.075344585439e-06, 4.7277e-01, 2.3420e-03, - 2DIAGNOSTIC, 94, -8.008536421848e-01, 2.088620740125e-06, 4.7576e-01, 2.9941e-03, - 2DIAGNOSTIC, 95, -8.009169635022e-01, 2.359991390744e-06, 4.7873e-01, 2.9640e-03, - 2DIAGNOSTIC, 96, -8.007404532307e-01, 1.423559887401e-06, 4.8112e-01, 2.3961e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.874435546996e-01, 1.797693134862e+308, 5.4145e-01, 6.0329e-02, - 2DIAGNOSTIC, 2, -5.877658014541e-01, 1.797693134862e+308, 5.5322e-01, 1.1765e-02, - 2DIAGNOSTIC, 3, -5.882435160732e-01, 1.797693134862e+308, 5.6532e-01, 1.2100e-02, - 2DIAGNOSTIC, 4, -5.889349644433e-01, 1.797693134862e+308, 5.7798e-01, 1.2661e-02, - 2DIAGNOSTIC, 5, -5.900082037442e-01, 1.797693134862e+308, 5.9023e-01, 1.2251e-02, - 2DIAGNOSTIC, 6, -5.914469558558e-01, 1.797693134862e+308, 6.0243e-01, 1.2204e-02, - 2DIAGNOSTIC, 7, -5.931589422582e-01, 1.797693134862e+308, 6.1470e-01, 1.2269e-02, - 2DIAGNOSTIC, 8, -5.948012423175e-01, 1.797693134862e+308, 6.3276e-01, 1.8053e-02, - 2DIAGNOSTIC, 9, -5.954257202081e-01, 1.797693134862e+308, 6.5539e-01, 2.2636e-02, - 2DIAGNOSTIC, 10, -5.954603316160e-01, 1.037723195459e-03, 6.6841e-01, 1.3022e-02, - 2DIAGNOSTIC, 11, -5.955692846196e-01, 9.280655917739e-04, 6.8106e-01, 1.2652e-02, - 2DIAGNOSTIC, 12, -5.957458303703e-01, 7.729895167177e-04, 6.9342e-01, 1.2358e-02, - 2DIAGNOSTIC, 13, -5.959944389987e-01, 5.983293100874e-04, 7.0596e-01, 1.2533e-02, - 2DIAGNOSTIC, 14, -5.962985801695e-01, 4.285682740246e-04, 7.1873e-01, 1.2774e-02, - 2DIAGNOSTIC, 15, -5.966456669802e-01, 2.880554979647e-04, 7.3064e-01, 1.1908e-02, - 2DIAGNOSTIC, 16, -5.970595099180e-01, 1.937609640831e-04, 7.4277e-01, 1.2134e-02, - 2DIAGNOSTIC, 17, -5.975994260378e-01, 1.551254302718e-04, 7.5787e-01, 1.5103e-02, - 2DIAGNOSTIC, 18, -5.981793947745e-01, 1.650544869757e-04, 7.7004e-01, 1.2163e-02, - 2DIAGNOSTIC, 19, -5.984123807138e-01, 1.802105953849e-04, 7.8344e-01, 1.3407e-02, - 2DIAGNOSTIC, 20, -5.985588603670e-01, 1.816728150406e-04, 8.0171e-01, 1.8265e-02, - 2DIAGNOSTIC, 21, -5.985907965441e-01, 1.694481972317e-04, 8.1394e-01, 1.2234e-02, - 2DIAGNOSTIC, 22, -5.987507481091e-01, 1.498480538064e-04, 8.2648e-01, 1.2537e-02, - 2DIAGNOSTIC, 23, -5.988749338012e-01, 1.255734400408e-04, 8.4069e-01, 1.4214e-02, - 2DIAGNOSTIC, 24, -5.989753353642e-01, 9.967168308419e-05, 8.5778e-01, 1.7084e-02, - 2DIAGNOSTIC, 25, -5.989851602427e-01, 7.347808747432e-05, 8.7017e-01, 1.2393e-02, - 2DIAGNOSTIC, 26, -5.990242941350e-01, 5.077903063907e-05, 8.8419e-01, 1.4017e-02, - 2DIAGNOSTIC, 27, -5.990578301256e-01, 3.499545724062e-05, 8.9762e-01, 1.3434e-02, - 2DIAGNOSTIC, 28, -5.990954627601e-01, 2.755175711819e-05, 9.1067e-01, 1.3051e-02, - 2DIAGNOSTIC, 29, -5.991322968279e-01, 2.251372657603e-05, 9.2387e-01, 1.3200e-02, - 2DIAGNOSTIC, 30, -5.992494718812e-01, 2.001837872480e-05, 9.3787e-01, 1.3997e-02, - 2DIAGNOSTIC, 31, -5.993791190909e-01, 1.830692280412e-05, 9.5668e-01, 1.8806e-02, - 2DIAGNOSTIC, 32, -5.994580710727e-01, 1.855588834303e-05, 9.6893e-01, 1.2253e-02, - 2DIAGNOSTIC, 33, -5.995257223832e-01, 1.987023245289e-05, 9.8104e-01, 1.2115e-02, - 2DIAGNOSTIC, 34, -5.996210947212e-01, 2.206678171578e-05, 9.9638e-01, 1.5336e-02, - 2DIAGNOSTIC, 35, -5.996672881879e-01, 2.284743846898e-05, 1.0085e+00, 1.2122e-02, - 2DIAGNOSTIC, 36, -5.997198502552e-01, 2.268756089231e-05, 1.0237e+00, 1.5246e-02, - 2DIAGNOSTIC, 37, -5.997291444618e-01, 2.101113223051e-05, 1.0377e+00, 1.3908e-02, - 2DIAGNOSTIC, 38, -5.997266843509e-01, 1.796834304564e-05, 1.0549e+00, 1.7226e-02, - 2DIAGNOSTIC, 39, -5.997270755974e-01, 1.388657745256e-05, 1.0688e+00, 1.3908e-02, - 2DIAGNOSTIC, 40, -5.997235538307e-01, 1.008282810585e-05, 1.0821e+00, 1.3352e-02, - 2DIAGNOSTIC, 41, -5.997227829790e-01, 7.065948862840e-06, 1.0948e+00, 1.2676e-02, - 2DIAGNOSTIC, 42, -5.997177264280e-01, 4.426538156698e-06, 1.1086e+00, 1.3762e-02, - 2DIAGNOSTIC, 43, -5.997197803086e-01, 2.318405027481e-06, 1.1216e+00, 1.2996e-02, - 2DIAGNOSTIC, 44, -5.997200037786e-01, 1.183207271556e-06, 1.1364e+00, 1.4831e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.992317022601e-01, 1.797693134862e+308, 1.3659e+00, 2.2947e-01, - Elapsed time (stage 1): 1.3844e+00 - - -Total elapsed time: 3.4330e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:05:03 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 48 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 83 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 91.49% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 91.49% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[19160 1148 994 408 9466 442 799 491 489 165 2106 741 - 182 207 589 262 0 0 0 0 0 0 0 0 - 0 0 0 0 0 0 0 0 0 0 0 0 - 0 0 0 0 0 0 0 0 0 0 0 0] -[207093 43863 27016 20026 27439 20236 22548 16000 18820 14304 - 17770 9045 12343 9547 11091 8957 11177 3395 10147 5965 - 1491 2779 2664 1843 5125 1759 1988 2033 775 672 - 1346 1037 848 879 0 1191 811 800 451 661 - 871 190 171 176 765 250 234 0] -[ 0 0 0 0 0 0 0 0 0 0 0 0 - 0 0 0 6718 0 0 606 17923 3866 0 781 0 - 0 0 0 0 165 1718 0 617 552 0 0 0 - 5712 0 0 0 9414 224 0 253 519 0 0 0] -[ 13526 408 1049 0 3227 3683 1946 1422 6698 2862 - 2712 919 1884 807 1958 154135 1584 742 20747 2512 - 1283 4229 177 897 1102 252 762 1426 9077 100033 - 7210 250 11260 1489 541 1642 3530 546 2330 1106 - 2544 7002 1243 21214 20767 1645 996 892] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:14:04 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:14:09 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:17:51 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:17:51 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:17:52 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:18:02 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:18:05 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC009 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:18:20 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:18:44 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:20:32 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:20:33 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:21:49 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:21:50 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x560020c48d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [73.2585, 118.949, -134.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x560020abf730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe41fae7010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x560020c4c020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 47.1306, -128.664] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x560020c520c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe41c428010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x560020c62840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [73.2585, 118.949, -134.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x560020c4e890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe417754010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x560020c663e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 47.1306, -128.664] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x560020c55130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fe414095010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.748613516126e-01, 1.797693134862e+308, 2.3369e-01, 2.3369e-01, - 2DIAGNOSTIC, 2, -4.777930935977e-01, 1.797693134862e+308, 2.3496e-01, 1.2691e-03, - 2DIAGNOSTIC, 3, -4.820928280868e-01, 1.797693134862e+308, 2.3626e-01, 1.3070e-03, - 2DIAGNOSTIC, 4, -4.890815999134e-01, 1.797693134862e+308, 2.3780e-01, 1.5352e-03, - 2DIAGNOSTIC, 5, -4.952107814002e-01, 1.797693134862e+308, 2.3919e-01, 1.3890e-03, - 2DIAGNOSTIC, 6, -4.969807169618e-01, 1.797693134862e+308, 2.4064e-01, 1.4510e-03, - 2DIAGNOSTIC, 7, -4.973191354863e-01, 1.797693134862e+308, 2.4193e-01, 1.2941e-03, - 2DIAGNOSTIC, 8, -4.971853006251e-01, 1.797693134862e+308, 2.4321e-01, 1.2732e-03, - 2DIAGNOSTIC, 9, -4.980062745152e-01, 1.797693134862e+308, 2.4468e-01, 1.4770e-03, - 2DIAGNOSTIC, 10, -4.998274481106e-01, 3.324476836036e-03, 2.4675e-01, 2.0680e-03, - 2DIAGNOSTIC, 11, -4.997309166273e-01, 2.350689975956e-03, 2.4844e-01, 1.6911e-03, - 2DIAGNOSTIC, 12, -5.003034378286e-01, 1.504050341870e-03, 2.5034e-01, 1.8950e-03, - 2DIAGNOSTIC, 13, -5.009188682679e-01, 8.682127981220e-04, 2.5175e-01, 1.4100e-03, - 2DIAGNOSTIC, 14, -5.004781996166e-01, 5.079039384213e-04, 2.5328e-01, 1.5349e-03, - 2DIAGNOSTIC, 15, -5.018622616965e-01, 4.361944657036e-04, 2.5506e-01, 1.7819e-03, - 2DIAGNOSTIC, 16, -5.031113618444e-01, 4.407302330005e-04, 2.5723e-01, 2.1710e-03, - 2DIAGNOSTIC, 17, -5.048514097118e-01, 4.746389128037e-04, 2.5878e-01, 1.5500e-03, - 2DIAGNOSTIC, 18, -5.046215749433e-01, 4.486824608030e-04, 2.6060e-01, 1.8148e-03, - 2DIAGNOSTIC, 19, -5.047265830984e-01, 4.121507422010e-04, 2.6217e-01, 1.5750e-03, - 2DIAGNOSTIC, 20, -5.044853190321e-01, 3.868904223766e-04, 2.6416e-01, 1.9898e-03, - 2DIAGNOSTIC, 21, -5.052096621903e-01, 3.440629911836e-04, 2.6669e-01, 2.5280e-03, - 2DIAGNOSTIC, 22, -5.049194481898e-01, 2.791308659577e-04, 2.6822e-01, 1.5261e-03, - 2DIAGNOSTIC, 23, -5.050274042870e-01, 2.134031699420e-04, 2.7001e-01, 1.7920e-03, - 2DIAGNOSTIC, 24, -5.050667044475e-01, 1.240385383792e-04, 2.7155e-01, 1.5371e-03, - 2DIAGNOSTIC, 25, -5.047716538157e-01, 5.474237312497e-05, 2.7311e-01, 1.5600e-03, - 2DIAGNOSTIC, 26, -5.047963079563e-01, 1.263675719038e-05, 2.7467e-01, 1.5631e-03, - 2DIAGNOSTIC, 27, -5.048255419033e-01, 9.994401106307e-06, 2.7621e-01, 1.5368e-03, - 2DIAGNOSTIC, 28, -5.048535461970e-01, 2.601078787558e-06, 2.7778e-01, 1.5721e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.642970353000e-01, 1.797693134862e+308, 5.1530e-01, 2.3752e-01, - 2DIAGNOSTIC, 2, -3.640659788162e-01, 1.797693134862e+308, 5.1758e-01, 2.2821e-03, - 2DIAGNOSTIC, 3, -3.647242589658e-01, 1.797693134862e+308, 5.1976e-01, 2.1861e-03, - 2DIAGNOSTIC, 4, -3.659795919407e-01, 1.797693134862e+308, 5.2202e-01, 2.2590e-03, - 2DIAGNOSTIC, 5, -3.675029528017e-01, 1.797693134862e+308, 5.2425e-01, 2.2221e-03, - 2DIAGNOSTIC, 6, -3.691982799481e-01, 1.797693134862e+308, 5.2653e-01, 2.2860e-03, - 2DIAGNOSTIC, 7, -3.725940079651e-01, 1.797693134862e+308, 5.2890e-01, 2.3730e-03, - 2DIAGNOSTIC, 8, -3.959011242105e-01, 1.797693134862e+308, 5.3201e-01, 3.1009e-03, - 2DIAGNOSTIC, 9, -4.119616153351e-01, 1.797693134862e+308, 5.3921e-01, 7.2060e-03, - 2DIAGNOSTIC, 10, -4.119615504741e-01, 8.613452143277e-03, 5.4127e-01, 2.0630e-03, - 2DIAGNOSTIC, 11, -4.119618647365e-01, 9.155950320666e-03, 5.4331e-01, 2.0392e-03, - 2DIAGNOSTIC, 12, -4.119623960924e-01, 8.780104956948e-03, 5.4536e-01, 2.0440e-03, - 2DIAGNOSTIC, 13, -4.119632943684e-01, 7.689218818697e-03, 5.4765e-01, 2.2922e-03, - 2DIAGNOSTIC, 14, -4.119648116775e-01, 6.117433789915e-03, 5.4982e-01, 2.1698e-03, - 2DIAGNOSTIC, 15, -4.119673758635e-01, 4.300416152294e-03, 5.5196e-01, 2.1400e-03, - 2DIAGNOSTIC, 16, -4.119717126617e-01, 2.427189121239e-03, 5.5407e-01, 2.1060e-03, - 2DIAGNOSTIC, 17, -4.119790220664e-01, 6.874617255666e-04, 5.5618e-01, 2.1119e-03, - 2DIAGNOSTIC, 18, -4.119913235779e-01, 4.034876110628e-06, 5.5835e-01, 2.1751e-03, - 2DIAGNOSTIC, 19, -4.119530773050e-01, 3.010469585694e-06, 5.6053e-01, 2.1770e-03, - 2DIAGNOSTIC, 20, -4.119878309470e-01, 3.269419243314e-06, 5.6270e-01, 2.1660e-03, - 2DIAGNOSTIC, 21, -4.120452376898e-01, 5.278576955814e-06, 5.6492e-01, 2.2199e-03, - 2DIAGNOSTIC, 22, -4.121406229851e-01, 9.809613604764e-06, 5.6705e-01, 2.1369e-03, - 2DIAGNOSTIC, 23, -4.122973400524e-01, 1.800775112770e-05, 5.6917e-01, 2.1179e-03, - 2DIAGNOSTIC, 24, -4.125640651019e-01, 3.186896496189e-05, 5.7131e-01, 2.1389e-03, - 2DIAGNOSTIC, 25, -4.129842807068e-01, 5.363980247505e-05, 5.7352e-01, 2.2099e-03, - 2DIAGNOSTIC, 26, -4.138798479298e-01, 9.315847372299e-05, 5.7571e-01, 2.1861e-03, - 2DIAGNOSTIC, 27, -4.149209668844e-01, 1.480877926913e-04, 5.7792e-01, 2.2149e-03, - 2DIAGNOSTIC, 28, -4.159989486777e-01, 2.123824679641e-04, 5.8015e-01, 2.2271e-03, - 2DIAGNOSTIC, 29, -4.170622203328e-01, 2.769562968123e-04, 5.8302e-01, 2.8710e-03, - 2DIAGNOSTIC, 30, -4.174405183515e-01, 3.205145040446e-04, 5.8582e-01, 2.7978e-03, - 2DIAGNOSTIC, 31, -4.176096460727e-01, 3.361739437847e-04, 5.8835e-01, 2.5358e-03, - 2DIAGNOSTIC, 32, -4.178512576158e-01, 3.264770573995e-04, 5.9091e-01, 2.5570e-03, - 2DIAGNOSTIC, 33, -4.179047754516e-01, 2.907730759055e-04, 5.9333e-01, 2.4190e-03, - 2DIAGNOSTIC, 34, -4.179797359727e-01, 2.367660440411e-04, 5.9584e-01, 2.5160e-03, - 2DIAGNOSTIC, 35, -4.179903098624e-01, 1.721461390074e-04, 5.9937e-01, 3.5281e-03, - 2DIAGNOSTIC, 36, -4.180138725010e-01, 1.128540253405e-04, 6.0180e-01, 2.4259e-03, - 2DIAGNOSTIC, 37, -4.179362941845e-01, 6.420951724814e-05, 6.0410e-01, 2.3060e-03, - 2DIAGNOSTIC, 38, -4.178282603181e-01, 2.967346704190e-05, 6.0673e-01, 2.6250e-03, - 2DIAGNOSTIC, 39, -4.180162574030e-01, 1.664334459794e-05, 6.0903e-01, 2.3050e-03, - 2DIAGNOSTIC, 40, -4.180485917219e-01, 9.802688622988e-06, 6.1133e-01, 2.2941e-03, - 2DIAGNOSTIC, 41, -4.184631017885e-01, 1.231692518968e-05, 6.1361e-01, 2.2869e-03, - 2DIAGNOSTIC, 42, -4.194384234703e-01, 3.375292585999e-05, 6.1627e-01, 2.6598e-03, - 2DIAGNOSTIC, 43, -4.205201360893e-01, 6.909210932046e-05, 6.2056e-01, 4.2889e-03, - 2DIAGNOSTIC, 44, -4.206836840857e-01, 9.976578862649e-05, 6.2283e-01, 2.2640e-03, - 2DIAGNOSTIC, 45, -4.212622187782e-01, 1.289788036685e-04, 6.2508e-01, 2.2531e-03, - 2DIAGNOSTIC, 46, -4.220254762185e-01, 1.564792360455e-04, 6.2731e-01, 2.2299e-03, - 2DIAGNOSTIC, 47, -4.228776181754e-01, 1.789208403011e-04, 6.2959e-01, 2.2831e-03, - 2DIAGNOSTIC, 48, -4.239359273414e-01, 1.967235068943e-04, 6.3192e-01, 2.3251e-03, - 2DIAGNOSTIC, 49, -4.259547396528e-01, 2.263534310908e-04, 6.3519e-01, 3.2699e-03, - 2DIAGNOSTIC, 50, -4.273155649335e-01, 2.521058242531e-04, 6.3876e-01, 3.5751e-03, - 2DIAGNOSTIC, 51, -4.273012350221e-01, 2.577807711437e-04, 6.4103e-01, 2.2640e-03, - 2DIAGNOSTIC, 52, -4.276963763696e-01, 2.569760600609e-04, 6.4361e-01, 2.5830e-03, - 2DIAGNOSTIC, 53, -4.280907392185e-01, 2.508785023702e-04, 6.4622e-01, 2.6059e-03, - 2DIAGNOSTIC, 54, -4.282344235245e-01, 2.243928061257e-04, 6.4881e-01, 2.5890e-03, - 2DIAGNOSTIC, 55, -4.282472804595e-01, 1.846540112607e-04, 6.5107e-01, 2.2609e-03, - 2DIAGNOSTIC, 56, -4.282995573139e-01, 1.390747538020e-04, 6.5367e-01, 2.6000e-03, - 2DIAGNOSTIC, 57, -4.283783612396e-01, 9.325656015715e-05, 6.5595e-01, 2.2800e-03, - 2DIAGNOSTIC, 58, -4.284442873804e-01, 5.294581958806e-05, 6.5824e-01, 2.2938e-03, - 2DIAGNOSTIC, 59, -4.286879424056e-01, 3.505002163736e-05, 6.6053e-01, 2.2922e-03, - 2DIAGNOSTIC, 60, -4.289764760321e-01, 3.347826878958e-05, 6.6316e-01, 2.6309e-03, - 2DIAGNOSTIC, 61, -4.294655714937e-01, 3.404631022336e-05, 6.6615e-01, 2.9860e-03, - 2DIAGNOSTIC, 62, -4.297577548235e-01, 3.880913241652e-05, 6.6881e-01, 2.6610e-03, - 2DIAGNOSTIC, 63, -4.297728639967e-01, 4.416973499541e-05, 6.7148e-01, 2.6710e-03, - 2DIAGNOSTIC, 64, -4.297368477809e-01, 4.639025321039e-05, 6.7422e-01, 2.7380e-03, - 2DIAGNOSTIC, 65, -4.297597759536e-01, 4.449078112473e-05, 6.7661e-01, 2.3949e-03, - 2DIAGNOSTIC, 66, -4.297245321955e-01, 3.850272131578e-05, 6.7897e-01, 2.3551e-03, - 2DIAGNOSTIC, 67, -4.297696376523e-01, 3.030613435440e-05, 6.8129e-01, 2.3201e-03, - 2DIAGNOSTIC, 68, -4.298351596002e-01, 2.083326937983e-05, 6.8354e-01, 2.2511e-03, - 2DIAGNOSTIC, 69, -4.300699539095e-01, 1.444830956883e-05, 6.8613e-01, 2.5852e-03, - 2DIAGNOSTIC, 70, -4.304378621215e-01, 1.318001342451e-05, 6.8905e-01, 2.9230e-03, - 2DIAGNOSTIC, 71, -4.303906062944e-01, 1.484076451176e-05, 6.9127e-01, 2.2249e-03, - 2DIAGNOSTIC, 72, -4.304246235413e-01, 1.824749111684e-05, 6.9352e-01, 2.2511e-03, - 2DIAGNOSTIC, 73, -4.303368687375e-01, 1.918970926907e-05, 6.9631e-01, 2.7821e-03, - 2DIAGNOSTIC, 74, -4.306085300358e-01, 2.044076572054e-05, 7.0448e-01, 8.1742e-03, - 2DIAGNOSTIC, 75, -4.306085293144e-01, 1.982293335068e-05, 7.0677e-01, 2.2931e-03, - 2DIAGNOSTIC, 76, -4.306085341183e-01, 1.707496546140e-05, 7.0904e-01, 2.2621e-03, - 2DIAGNOSTIC, 77, -4.306085422402e-01, 1.329537978511e-05, 7.1129e-01, 2.2500e-03, - 2DIAGNOSTIC, 78, -4.306085559692e-01, 8.923582886053e-06, 7.1351e-01, 2.2280e-03, - 2DIAGNOSTIC, 79, -4.306085791708e-01, 5.745602233502e-06, 7.1573e-01, 2.2161e-03, - 2DIAGNOSTIC, 80, -4.306086183649e-01, 5.266191627436e-06, 7.1797e-01, 2.2428e-03, - 2DIAGNOSTIC, 81, -4.306086845286e-01, 3.953132253052e-06, 7.2073e-01, 2.7580e-03, - 2DIAGNOSTIC, 82, -4.306087960882e-01, 2.662274739508e-06, 7.2381e-01, 3.0751e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -2.932430753472e-01, 1.797693134862e+308, 9.8716e-01, 2.6336e-01, - 2DIAGNOSTIC, 2, -2.942103618203e-01, 1.797693134862e+308, 1.0001e+00, 1.2924e-02, - 2DIAGNOSTIC, 3, -2.969823015595e-01, 1.797693134862e+308, 1.0131e+00, 1.3022e-02, - 2DIAGNOSTIC, 4, -3.004747472747e-01, 1.797693134862e+308, 1.0253e+00, 1.2175e-02, - 2DIAGNOSTIC, 5, -3.023104127892e-01, 1.797693134862e+308, 1.0373e+00, 1.1970e-02, - 2DIAGNOSTIC, 6, -3.082201631171e-01, 1.797693134862e+308, 1.0493e+00, 1.2065e-02, - 2DIAGNOSTIC, 7, -3.099125816729e-01, 1.797693134862e+308, 1.0621e+00, 1.2803e-02, - 2DIAGNOSTIC, 8, -3.129263306952e-01, 1.797693134862e+308, 1.0747e+00, 1.2584e-02, - 2DIAGNOSTIC, 9, -3.182421123289e-01, 1.797693134862e+308, 1.0893e+00, 1.4616e-02, - 2DIAGNOSTIC, 10, -3.353431638413e-01, 7.374324596288e-03, 1.1095e+00, 2.0214e-02, - 2DIAGNOSTIC, 11, -3.401360948930e-01, 8.094927066147e-03, 1.1220e+00, 1.2512e-02, - 2DIAGNOSTIC, 12, -3.627917881383e-01, 9.702335588966e-03, 1.1345e+00, 1.2476e-02, - 2DIAGNOSTIC, 13, -5.036645173182e-01, 1.934476074656e-02, 1.1561e+00, 2.1587e-02, - 2DIAGNOSTIC, 14, -5.155401357445e-01, 2.588680148064e-02, 1.1674e+00, 1.1332e-02, - 2DIAGNOSTIC, 15, -5.342949213404e-01, 2.993838332594e-02, 1.1789e+00, 1.1432e-02, - 2DIAGNOSTIC, 16, -5.432740833222e-01, 3.134863579185e-02, 1.1921e+00, 1.3267e-02, - 2DIAGNOSTIC, 17, -5.472650435656e-01, 2.992409937121e-02, 1.2071e+00, 1.4980e-02, - 2DIAGNOSTIC, 18, -5.505513187084e-01, 2.618660871689e-02, 1.2185e+00, 1.1386e-02, - 2DIAGNOSTIC, 19, -5.563850286087e-01, 2.099891807817e-02, 1.2321e+00, 1.3550e-02, - 2DIAGNOSTIC, 20, -5.713776487424e-01, 1.578186645783e-02, 1.2476e+00, 1.5514e-02, - 2DIAGNOSTIC, 21, -5.769351015323e-01, 1.016661567909e-02, 1.2597e+00, 1.2137e-02, - 2DIAGNOSTIC, 22, -5.818301510705e-01, 5.053016393429e-03, 1.2788e+00, 1.9125e-02, - 2DIAGNOSTIC, 23, -5.820785405891e-01, 4.159494542443e-03, 1.2913e+00, 1.2439e-02, - 2DIAGNOSTIC, 24, -5.826927760027e-01, 3.311687521101e-03, 1.3042e+00, 1.2963e-02, - 2DIAGNOSTIC, 25, -5.829924639832e-01, 2.729171075807e-03, 1.3163e+00, 1.2054e-02, - 2DIAGNOSTIC, 26, -5.839653818884e-01, 2.192273119720e-03, 1.3290e+00, 1.2664e-02, - 2DIAGNOSTIC, 27, -5.871560940965e-01, 1.672528376939e-03, 1.3618e+00, 3.2805e-02, - 2DIAGNOSTIC, 28, -5.871775068801e-01, 1.118442018778e-03, 1.3756e+00, 1.3836e-02, - 2DIAGNOSTIC, 29, -5.871787470501e-01, 6.277270768884e-04, 1.3894e+00, 1.3811e-02, - 2DIAGNOSTIC, 30, -5.871806727199e-01, 4.243465431075e-04, 1.4014e+00, 1.1946e-02, - 2DIAGNOSTIC, 31, -5.871937188101e-01, 3.036512850382e-04, 1.4132e+00, 1.1890e-02, - 2DIAGNOSTIC, 32, -5.872399173418e-01, 2.558552064024e-04, 1.4252e+00, 1.1992e-02, - 2DIAGNOSTIC, 33, -5.872842626221e-01, 1.927499140036e-04, 1.4395e+00, 1.4285e-02, - 2DIAGNOSTIC, 34, -5.873193971242e-01, 1.284191253548e-04, 1.4555e+00, 1.5983e-02, - 2DIAGNOSTIC, 35, -5.873393343059e-01, 6.212215231285e-05, 1.4681e+00, 1.2625e-02, - 2DIAGNOSTIC, 36, -5.874368439715e-01, 1.045989762957e-05, 1.4804e+00, 1.2252e-02, - 2DIAGNOSTIC, 37, -5.876037615848e-01, 1.409167769767e-05, 1.4928e+00, 1.2446e-02, - 2DIAGNOSTIC, 38, -5.877805801744e-01, 1.921760474827e-05, 1.5053e+00, 1.2453e-02, - 2DIAGNOSTIC, 39, -5.879583137713e-01, 2.492738105495e-05, 1.5196e+00, 1.4302e-02, - 2DIAGNOSTIC, 40, -5.882760921983e-01, 3.260800644882e-05, 1.5316e+00, 1.1988e-02, - 2DIAGNOSTIC, 41, -5.885425780599e-01, 4.063909654070e-05, 1.5438e+00, 1.2264e-02, - 2DIAGNOSTIC, 42, -5.889608303435e-01, 5.065989946106e-05, 1.5564e+00, 1.2554e-02, - 2DIAGNOSTIC, 43, -5.902718532779e-01, 7.315252571435e-05, 1.5723e+00, 1.5919e-02, - 2DIAGNOSTIC, 44, -5.905014248234e-01, 9.057758559402e-05, 1.5849e+00, 1.2626e-02, - 2DIAGNOSTIC, 45, -5.907609493176e-01, 1.021761826878e-04, 1.6048e+00, 1.9831e-02, - 2DIAGNOSTIC, 46, -5.908228224543e-01, 1.055825042360e-04, 1.6189e+00, 1.4102e-02, - 2DIAGNOSTIC, 47, -5.908676071964e-01, 1.012705740378e-04, 1.6329e+00, 1.4010e-02, - 2DIAGNOSTIC, 48, -5.909428812319e-01, 9.028825524820e-05, 1.6468e+00, 1.3964e-02, - 2DIAGNOSTIC, 49, -5.909405877489e-01, 7.314945466860e-05, 1.6625e+00, 1.5639e-02, - 2DIAGNOSTIC, 50, -5.909335108888e-01, 5.347903216396e-05, 1.6785e+00, 1.6069e-02, - 2DIAGNOSTIC, 51, -5.909309327977e-01, 3.257308174434e-05, 1.6921e+00, 1.3515e-02, - 2DIAGNOSTIC, 52, -5.909085789262e-01, 1.338397437099e-05, 1.7054e+00, 1.3374e-02, - 2DIAGNOSTIC, 53, -5.909030666429e-01, 7.269012890852e-06, 1.7189e+00, 1.3512e-02, - 2DIAGNOSTIC, 54, -5.909016949097e-01, 3.026493552841e-06, 1.7335e+00, 1.4596e-02, - 2DIAGNOSTIC, 55, -5.909138390760e-01, 1.423572012230e-06, 1.7473e+00, 1.3755e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.032513764617e-01, 1.797693134862e+308, 2.1660e+00, 4.1866e-01, - 2DIAGNOSTIC, 2, -5.035882295621e-01, 1.797693134862e+308, 2.2433e+00, 7.7383e-02, - 2DIAGNOSTIC, 3, -5.037945602785e-01, 1.797693134862e+308, 2.3195e+00, 7.6174e-02, - 2DIAGNOSTIC, 4, -5.039665947773e-01, 1.797693134862e+308, 2.3951e+00, 7.5631e-02, - 2DIAGNOSTIC, 5, -5.041816085665e-01, 1.797693134862e+308, 2.4734e+00, 7.8303e-02, - 2DIAGNOSTIC, 6, -5.050205951619e-01, 1.797693134862e+308, 2.5848e+00, 1.1139e-01, - 2DIAGNOSTIC, 7, -5.052960093174e-01, 1.797693134862e+308, 2.6591e+00, 7.4232e-02, - 2DIAGNOSTIC, 8, -5.054488119458e-01, 1.797693134862e+308, 2.7454e+00, 8.6285e-02, - 2DIAGNOSTIC, 9, -5.055340839477e-01, 1.797693134862e+308, 2.8306e+00, 8.5261e-02, - 2DIAGNOSTIC, 10, -5.056017053263e-01, 3.395112984719e-04, 2.9339e+00, 1.0332e-01, - 2DIAGNOSTIC, 11, -5.058219038114e-01, 2.870272326374e-04, 3.0500e+00, 1.1604e-01, - 2DIAGNOSTIC, 12, -5.059093442091e-01, 2.371407167609e-04, 3.1480e+00, 9.8011e-02, - 2DIAGNOSTIC, 13, -5.059297885415e-01, 1.839711312676e-04, 3.2445e+00, 9.6524e-02, - 2DIAGNOSTIC, 14, -5.059377537891e-01, 1.295751618533e-04, 3.3291e+00, 8.4582e-02, - 2DIAGNOSTIC, 15, -5.059482299963e-01, 7.856856601716e-05, 3.4641e+00, 1.3498e-01, - 2DIAGNOSTIC, 16, -5.059521357007e-01, 5.627294492705e-05, 3.5584e+00, 9.4314e-02, - 2DIAGNOSTIC, 17, -5.059578093997e-01, 4.076262242964e-05, 3.6522e+00, 9.3779e-02, - 2DIAGNOSTIC, 18, -5.059671614384e-01, 2.849538024095e-05, 3.7334e+00, 8.1187e-02, - 2DIAGNOSTIC, 19, -5.059672354965e-01, 1.762391476351e-05, 3.8257e+00, 9.2294e-02, - 2DIAGNOSTIC, 20, -5.059663806416e-01, 8.098101351488e-06, 3.9118e+00, 8.6114e-02, - 2DIAGNOSTIC, 21, -5.059665963909e-01, 4.722713777730e-06, 3.9875e+00, 7.5768e-02, - 2DIAGNOSTIC, 22, -5.059676606143e-01, 3.605639417016e-06, 4.0852e+00, 9.7626e-02, - 2DIAGNOSTIC, 23, -5.059753327988e-01, 3.065101562186e-06, 4.1596e+00, 7.4433e-02, - 2DIAGNOSTIC, 24, -5.059759083289e-01, 2.602981020561e-06, 4.2607e+00, 1.0109e-01, - 2DIAGNOSTIC, 25, -5.059816587127e-01, 2.427903484668e-06, 4.3476e+00, 8.6874e-02, - 2DIAGNOSTIC, 26, -5.059782188591e-01, 2.165998684175e-06, 4.4223e+00, 7.4705e-02, - 2DIAGNOSTIC, 27, -5.059754362736e-01, 1.891915021507e-06, 4.5201e+00, 9.7873e-02, - 2DIAGNOSTIC, 28, -5.059765037467e-01, 1.779211174752e-06, 4.6090e+00, 8.8913e-02, - 2DIAGNOSTIC, 29, -5.059734948327e-01, 1.554126833218e-06, 4.7091e+00, 1.0001e-01, - 2DIAGNOSTIC, 30, -5.059825279808e-01, 1.456056201082e-06, 4.8053e+00, 9.6262e-02, - 2DIAGNOSTIC, 31, -5.059761885740e-01, 1.213019499263e-06, 4.9142e+00, 1.0889e-01, - 2DIAGNOSTIC, 32, -5.059768938124e-01, 1.001773998865e-06, 4.9962e+00, 8.1991e-02, - Elapsed time (stage 0): 5.1306e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.273458923449e-01, 1.797693134862e+308, 2.0324e-01, 2.0323e-01, - 2DIAGNOSTIC, 2, -8.284061874117e-01, 1.797693134862e+308, 2.0448e-01, 1.2400e-03, - 2DIAGNOSTIC, 3, -8.295670787038e-01, 1.797693134862e+308, 2.0566e-01, 1.1868e-03, - 2DIAGNOSTIC, 4, -8.327433875322e-01, 1.797693134862e+308, 2.0687e-01, 1.2100e-03, - 2DIAGNOSTIC, 5, -8.378866814443e-01, 1.797693134862e+308, 2.0810e-01, 1.2231e-03, - 2DIAGNOSTIC, 6, -8.434676575758e-01, 1.797693134862e+308, 2.0933e-01, 1.2369e-03, - 2DIAGNOSTIC, 7, -8.511123510499e-01, 1.797693134862e+308, 2.1060e-01, 1.2631e-03, - 2DIAGNOSTIC, 8, -8.616014376460e-01, 1.797693134862e+308, 2.1226e-01, 1.6611e-03, - 2DIAGNOSTIC, 9, -8.775870131393e-01, 1.797693134862e+308, 2.1413e-01, 1.8721e-03, - 2DIAGNOSTIC, 10, -8.820935942897e-01, 4.354347656798e-03, 2.1564e-01, 1.5061e-03, - 2DIAGNOSTIC, 11, -8.872454483023e-01, 4.513890952666e-03, 2.1691e-01, 1.2729e-03, - 2DIAGNOSTIC, 12, -8.931182035621e-01, 4.434393268962e-03, 2.1825e-01, 1.3449e-03, - 2DIAGNOSTIC, 13, -8.993720385551e-01, 4.149607684893e-03, 2.1994e-01, 1.6921e-03, - 2DIAGNOSTIC, 14, -9.078746344115e-01, 3.797497771384e-03, 2.2214e-01, 2.1961e-03, - 2DIAGNOSTIC, 15, -9.138568062954e-01, 3.389007225762e-03, 2.2426e-01, 2.1191e-03, - 2DIAGNOSTIC, 16, -9.215449825736e-01, 2.996237923075e-03, 2.2631e-01, 2.0471e-03, - 2DIAGNOSTIC, 17, -9.262412001731e-01, 2.610001453612e-03, 2.2875e-01, 2.4440e-03, - 2DIAGNOSTIC, 18, -9.285966233298e-01, 2.252932288218e-03, 2.3109e-01, 2.3348e-03, - 2DIAGNOSTIC, 19, -9.288211734019e-01, 2.003112709422e-03, 2.3330e-01, 2.2130e-03, - 2DIAGNOSTIC, 20, -9.287440297491e-01, 1.665102767654e-03, 2.3510e-01, 1.7998e-03, - 2DIAGNOSTIC, 21, -9.287829926333e-01, 1.284756360802e-03, 2.3683e-01, 1.7300e-03, - 2DIAGNOSTIC, 22, -9.287131775247e-01, 9.045351427001e-04, 2.3840e-01, 1.5709e-03, - 2DIAGNOSTIC, 23, -9.286729815649e-01, 5.597944384061e-04, 2.3979e-01, 1.3862e-03, - 2DIAGNOSTIC, 24, -9.292620733574e-01, 3.138432679658e-04, 2.4131e-01, 1.5290e-03, - 2DIAGNOSTIC, 25, -9.303915282872e-01, 1.481378346737e-04, 2.4299e-01, 1.6770e-03, - 2DIAGNOSTIC, 26, -9.309209459681e-01, 8.111127091572e-05, 2.4452e-01, 1.5249e-03, - 2DIAGNOSTIC, 27, -9.307145989675e-01, 6.399875350951e-05, 2.4647e-01, 1.9500e-03, - 2DIAGNOSTIC, 28, -9.321246361989e-01, 8.522777325252e-05, 2.4787e-01, 1.4050e-03, - 2DIAGNOSTIC, 29, -9.328990580986e-01, 1.074220850425e-04, 2.4942e-01, 1.5461e-03, - 2DIAGNOSTIC, 30, -9.348449121622e-01, 1.374025955521e-04, 2.5181e-01, 2.3930e-03, - 2DIAGNOSTIC, 31, -9.343274176113e-01, 1.473539976476e-04, 2.5325e-01, 1.4381e-03, - 2DIAGNOSTIC, 32, -9.359803332843e-01, 1.591644867316e-04, 2.5473e-01, 1.4839e-03, - 2DIAGNOSTIC, 33, -9.367514513193e-01, 1.618306553456e-04, 2.5621e-01, 1.4760e-03, - 2DIAGNOSTIC, 34, -9.381862312124e-01, 1.672278280934e-04, 2.5793e-01, 1.7240e-03, - 2DIAGNOSTIC, 35, -9.383629327544e-01, 1.679732356350e-04, 2.5942e-01, 1.4892e-03, - 2DIAGNOSTIC, 36, -9.387533618616e-01, 1.613267588170e-04, 2.6111e-01, 1.6909e-03, - 2DIAGNOSTIC, 37, -9.394642406262e-01, 1.439651762627e-04, 2.6284e-01, 1.7271e-03, - 2DIAGNOSTIC, 38, -9.398041942375e-01, 1.280210154028e-04, 2.6452e-01, 1.6751e-03, - 2DIAGNOSTIC, 39, -9.420496350814e-01, 1.246208103625e-04, 2.6669e-01, 2.1780e-03, - 2DIAGNOSTIC, 40, -9.414667028807e-01, 1.201909304477e-04, 2.6822e-01, 1.5290e-03, - 2DIAGNOSTIC, 41, -9.419722220605e-01, 1.046992668464e-04, 2.7002e-01, 1.8020e-03, - 2DIAGNOSTIC, 42, -9.434756404977e-01, 1.035374364407e-04, 2.7148e-01, 1.4601e-03, - 2DIAGNOSTIC, 43, -9.433577113564e-01, 9.667125053586e-05, 2.7288e-01, 1.3928e-03, - 2DIAGNOSTIC, 44, -9.435640009584e-01, 9.263543319843e-05, 2.7421e-01, 1.3318e-03, - 2DIAGNOSTIC, 45, -9.446003097443e-01, 8.854265387081e-05, 2.7560e-01, 1.3950e-03, - 2DIAGNOSTIC, 46, -9.448680447473e-01, 8.055510223004e-05, 2.7777e-01, 2.1610e-03, - 2DIAGNOSTIC, 47, -9.451269472801e-01, 7.163355196562e-05, 2.7906e-01, 1.2999e-03, - 2DIAGNOSTIC, 48, -9.452875881347e-01, 5.919602263069e-05, 2.8088e-01, 1.8120e-03, - 2DIAGNOSTIC, 49, -9.454462351966e-01, 5.720774695216e-05, 2.8232e-01, 1.4410e-03, - 2DIAGNOSTIC, 50, -9.455386597992e-01, 4.673905827749e-05, 2.8380e-01, 1.4820e-03, - 2DIAGNOSTIC, 51, -9.449772073227e-01, 3.164191439716e-05, 2.8528e-01, 1.4770e-03, - 2DIAGNOSTIC, 52, -9.452216948612e-01, 2.481896735987e-05, 2.8697e-01, 1.6899e-03, - 2DIAGNOSTIC, 53, -9.453407045291e-01, 1.591524693234e-05, 2.8875e-01, 1.7829e-03, - 2DIAGNOSTIC, 54, -9.462123158371e-01, 1.186552548404e-05, 2.9014e-01, 1.3859e-03, - 2DIAGNOSTIC, 55, -9.463533001041e-01, 1.339557710717e-05, 2.9149e-01, 1.3571e-03, - 2DIAGNOSTIC, 56, -9.468850604405e-01, 1.813503368738e-05, 2.9321e-01, 1.7140e-03, - 2DIAGNOSTIC, 57, -9.463609734821e-01, 1.956253851941e-05, 2.9521e-01, 1.9989e-03, - 2DIAGNOSTIC, 58, -9.475627760742e-01, 2.640370374839e-05, 2.9690e-01, 1.6990e-03, - 2DIAGNOSTIC, 59, -9.475810276781e-01, 3.117097206666e-05, 2.9872e-01, 1.8110e-03, - 2DIAGNOSTIC, 60, -9.475880802141e-01, 3.343991291880e-05, 3.0023e-01, 1.5180e-03, - 2DIAGNOSTIC, 61, -9.476053186158e-01, 2.981952495731e-05, 3.0178e-01, 1.5509e-03, - 2DIAGNOSTIC, 62, -9.490419730117e-01, 3.192654730824e-05, 3.0705e-01, 5.2700e-03, - 2DIAGNOSTIC, 63, -9.490419660012e-01, 3.116519565210e-05, 3.0854e-01, 1.4892e-03, - 2DIAGNOSTIC, 64, -9.490419821505e-01, 3.170912919429e-05, 3.1007e-01, 1.5280e-03, - 2DIAGNOSTIC, 65, -9.490420094520e-01, 3.000152538214e-05, 3.1148e-01, 1.4110e-03, - 2DIAGNOSTIC, 66, -9.490420555994e-01, 2.810103508768e-05, 3.1291e-01, 1.4288e-03, - 2DIAGNOSTIC, 67, -9.490421335792e-01, 2.092365194638e-05, 3.1439e-01, 1.4801e-03, - 2DIAGNOSTIC, 68, -9.490422652858e-01, 1.740904748393e-05, 3.1568e-01, 1.2898e-03, - 2DIAGNOSTIC, 69, -9.490424875550e-01, 1.255474915480e-05, 3.1706e-01, 1.3809e-03, - 2DIAGNOSTIC, 70, -9.490428621408e-01, 6.785020059019e-06, 3.1842e-01, 1.3552e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.029496572566e-01, 1.797693134862e+308, 5.3469e-01, 2.1627e-01, - 2DIAGNOSTIC, 2, -8.021860067353e-01, 1.797693134862e+308, 5.3685e-01, 2.1660e-03, - 2DIAGNOSTIC, 3, -8.028460168482e-01, 1.797693134862e+308, 5.3887e-01, 2.0151e-03, - 2DIAGNOSTIC, 4, -8.041089871934e-01, 1.797693134862e+308, 5.4088e-01, 2.0099e-03, - 2DIAGNOSTIC, 5, -8.052544126314e-01, 1.797693134862e+308, 5.4287e-01, 1.9901e-03, - 2DIAGNOSTIC, 6, -8.067801091612e-01, 1.797693134862e+308, 5.4490e-01, 2.0342e-03, - 2DIAGNOSTIC, 7, -8.072348369869e-01, 1.797693134862e+308, 5.4710e-01, 2.1989e-03, - 2DIAGNOSTIC, 8, -8.078839339237e-01, 1.797693134862e+308, 5.5209e-01, 4.9860e-03, - 2DIAGNOSTIC, 9, -8.080078877796e-01, 1.797693134862e+308, 5.5409e-01, 2.0080e-03, - 2DIAGNOSTIC, 10, -8.080352264689e-01, 5.472470851659e-04, 5.5635e-01, 2.2600e-03, - 2DIAGNOSTIC, 11, -8.079026316662e-01, 4.611250341399e-04, 5.5848e-01, 2.1260e-03, - 2DIAGNOSTIC, 12, -8.079776641314e-01, 3.282301836853e-04, 5.6093e-01, 2.4500e-03, - 2DIAGNOSTIC, 13, -8.078597324332e-01, 2.007642579443e-04, 5.6336e-01, 2.4321e-03, - 2DIAGNOSTIC, 14, -8.077418686836e-01, 1.021306127532e-04, 5.6556e-01, 2.1939e-03, - 2DIAGNOSTIC, 15, -8.076592727766e-01, 3.194647960067e-05, 5.6776e-01, 2.1999e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.582681825885e-01, 1.797693134862e+308, 7.9555e-01, 2.2779e-01, - 2DIAGNOSTIC, 2, -6.604012500227e-01, 1.797693134862e+308, 8.0845e-01, 1.2899e-02, - 2DIAGNOSTIC, 3, -6.633557368898e-01, 1.797693134862e+308, 8.2113e-01, 1.2679e-02, - 2DIAGNOSTIC, 4, -6.667846269298e-01, 1.797693134862e+308, 8.3447e-01, 1.3347e-02, - 2DIAGNOSTIC, 5, -6.700290948766e-01, 1.797693134862e+308, 8.4739e-01, 1.2913e-02, - 2DIAGNOSTIC, 6, -6.733406113552e-01, 1.797693134862e+308, 8.6114e-01, 1.3758e-02, - 2DIAGNOSTIC, 7, -6.769271846820e-01, 1.797693134862e+308, 8.7579e-01, 1.4645e-02, - 2DIAGNOSTIC, 8, -6.801457165723e-01, 1.797693134862e+308, 8.9059e-01, 1.4798e-02, - 2DIAGNOSTIC, 9, -6.808834840336e-01, 1.797693134862e+308, 9.1627e-01, 2.5680e-02, - 2DIAGNOSTIC, 10, -6.808917172571e-01, 2.442011730104e-03, 9.3135e-01, 1.5083e-02, - 2DIAGNOSTIC, 11, -6.810209456738e-01, 1.969664767288e-03, 9.4637e-01, 1.5018e-02, - 2DIAGNOSTIC, 12, -6.811161480978e-01, 1.476926817723e-03, 9.6225e-01, 1.5878e-02, - 2DIAGNOSTIC, 13, -6.810545462931e-01, 1.019311643964e-03, 9.7752e-01, 1.5271e-02, - 2DIAGNOSTIC, 14, -6.810446474472e-01, 6.380373276946e-04, 9.9264e-01, 1.5127e-02, - 2DIAGNOSTIC, 15, -6.810141070217e-01, 3.403509761847e-04, 1.0077e+00, 1.5086e-02, - 2DIAGNOSTIC, 16, -6.810216408998e-01, 1.351426138088e-04, 1.0231e+00, 1.5352e-02, - 2DIAGNOSTIC, 17, -6.810372122188e-01, 2.909946058634e-05, 1.0390e+00, 1.5882e-02, - 2DIAGNOSTIC, 18, -6.810319213998e-01, 7.081891200661e-06, 1.0522e+00, 1.3270e-02, - 2DIAGNOSTIC, 19, -6.810337072931e-01, 3.363476255555e-06, 1.0654e+00, 1.3139e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.712500271967e-01, 1.797693134862e+308, 1.4980e+00, 4.3263e-01, - 2DIAGNOSTIC, 2, -5.721322949650e-01, 1.797693134862e+308, 1.5901e+00, 9.2104e-02, - 2DIAGNOSTIC, 3, -5.730264728166e-01, 1.797693134862e+308, 1.6767e+00, 8.6586e-02, - 2DIAGNOSTIC, 4, -5.736902135228e-01, 1.797693134862e+308, 1.7595e+00, 8.2807e-02, - 2DIAGNOSTIC, 5, -5.742640103722e-01, 1.797693134862e+308, 1.8509e+00, 9.1411e-02, - 2DIAGNOSTIC, 6, -5.747682329797e-01, 1.797693134862e+308, 1.9579e+00, 1.0697e-01, - 2DIAGNOSTIC, 7, -5.753633252086e-01, 1.797693134862e+308, 2.1284e+00, 1.7056e-01, - 2DIAGNOSTIC, 8, -5.753649533194e-01, 1.797693134862e+308, 2.2110e+00, 8.2557e-02, - 2DIAGNOSTIC, 9, -5.753766511480e-01, 1.797693134862e+308, 2.3027e+00, 9.1670e-02, - 2DIAGNOSTIC, 10, -5.753975024506e-01, 4.729190558441e-04, 2.3868e+00, 8.4139e-02, - 2DIAGNOSTIC, 11, -5.754281211973e-01, 3.252396717482e-04, 2.4915e+00, 1.0465e-01, - 2DIAGNOSTIC, 12, -5.754558459271e-01, 2.100011406578e-04, 2.6195e+00, 1.2809e-01, - 2DIAGNOSTIC, 13, -5.754694784284e-01, 1.281201077667e-04, 2.7353e+00, 1.1571e-01, - 2DIAGNOSTIC, 14, -5.754690981328e-01, 6.996850443475e-05, 2.8476e+00, 1.1237e-01, - 2DIAGNOSTIC, 15, -5.754898404630e-01, 3.277556467214e-05, 2.9445e+00, 9.6919e-02, - 2DIAGNOSTIC, 16, -5.755181775645e-01, 1.333791399391e-05, 3.0586e+00, 1.1405e-01, - 2DIAGNOSTIC, 17, -5.755352539729e-01, 1.293360427571e-05, 3.1558e+00, 9.7198e-02, - 2DIAGNOSTIC, 18, -5.755340549050e-01, 1.157198149784e-05, 3.3135e+00, 1.5770e-01, - 2DIAGNOSTIC, 19, -5.755379217435e-01, 9.871575518051e-06, 3.4099e+00, 9.6374e-02, - 2DIAGNOSTIC, 20, -5.755374368145e-01, 8.068081140421e-06, 3.5052e+00, 9.5369e-02, - 2DIAGNOSTIC, 21, -5.755366001672e-01, 6.505933281484e-06, 3.5889e+00, 8.3687e-02, - 2DIAGNOSTIC, 22, -5.755346211826e-01, 5.190512451854e-06, 3.6846e+00, 9.5703e-02, - 2DIAGNOSTIC, 23, -5.755360672431e-01, 3.978659433662e-06, 3.7931e+00, 1.0845e-01, - 2DIAGNOSTIC, 24, -5.755332353912e-01, 2.556275835786e-06, 3.8892e+00, 9.6083e-02, - 2DIAGNOSTIC, 25, -5.755337439886e-01, 1.541426091982e-06, 3.9725e+00, 8.3334e-02, - 2DIAGNOSTIC, 26, -5.755327926140e-01, 1.091789419962e-06, 4.0613e+00, 8.8770e-02, - 2DIAGNOSTIC, 27, -5.755342483060e-01, 1.028955119414e-06, 4.1659e+00, 1.0464e-01, - Elapsed time (stage 1): 4.2884e+00 - - -Total elapsed time: 9.4220e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:22:02 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:22:03 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5594629214f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 47.1306, -128.664] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559462926fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f179d3cc010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x559462922850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 47.1306, -128.664] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55946291ff30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f1799d0d010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x559462939b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 47.1306, -128.664] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x559462926550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f179664e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55946293ed70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 47.1306, -128.664] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55946293cc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f1792f8f010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x559462940f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 47.1306, -128.664] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55946293f3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f178f8d0010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x559462941540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [105.551, 47.1306, -128.664] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5594629414d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f178c211010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.526809858301e-01, 1.797693134862e+308, 2.1909e-01, 2.1909e-01, - 2DIAGNOSTIC, 2, -6.555419098972e-01, 1.797693134862e+308, 2.2132e-01, 2.2261e-03, - 2DIAGNOSTIC, 3, -6.596532100993e-01, 1.797693134862e+308, 2.2346e-01, 2.1460e-03, - 2DIAGNOSTIC, 4, -6.639226652716e-01, 1.797693134862e+308, 2.2561e-01, 2.1510e-03, - 2DIAGNOSTIC, 5, -6.670672515874e-01, 1.797693134862e+308, 2.2813e-01, 2.5120e-03, - 2DIAGNOSTIC, 6, -6.677409069849e-01, 1.797693134862e+308, 2.3021e-01, 2.0881e-03, - 2DIAGNOSTIC, 7, -6.685620897105e-01, 1.797693134862e+308, 2.3212e-01, 1.9009e-03, - 2DIAGNOSTIC, 8, -6.694906982209e-01, 1.797693134862e+308, 2.3449e-01, 2.3751e-03, - 2DIAGNOSTIC, 9, -6.695751651401e-01, 1.797693134862e+308, 2.3632e-01, 1.8289e-03, - 2DIAGNOSTIC, 10, -6.696416215558e-01, 1.646043848076e-03, 2.3866e-01, 2.3379e-03, - 2DIAGNOSTIC, 11, -6.701516342138e-01, 1.113133675518e-03, 2.4090e-01, 2.2478e-03, - 2DIAGNOSTIC, 12, -6.706856153263e-01, 6.893138154487e-04, 2.4318e-01, 2.2709e-03, - 2DIAGNOSTIC, 13, -6.704832338869e-01, 3.942740996660e-04, 2.4541e-01, 2.2349e-03, - 2DIAGNOSTIC, 14, -6.704864057186e-01, 2.346778033445e-04, 2.4766e-01, 2.2531e-03, - 2DIAGNOSTIC, 15, -6.704986615240e-01, 1.652822798092e-04, 2.4999e-01, 2.3229e-03, - 2DIAGNOSTIC, 16, -6.704005433994e-01, 1.043137288367e-04, 2.5200e-01, 2.0151e-03, - 2DIAGNOSTIC, 17, -6.704399504355e-01, 6.191951976535e-05, 2.5401e-01, 2.0049e-03, - 2DIAGNOSTIC, 18, -6.705430385734e-01, 4.327556943106e-05, 2.5629e-01, 2.2860e-03, - 2DIAGNOSTIC, 19, -6.708653818361e-01, 3.209162143496e-05, 2.5967e-01, 3.3729e-03, - 2DIAGNOSTIC, 20, -6.707333036026e-01, 1.741242696384e-05, 2.6181e-01, 2.1398e-03, - 2DIAGNOSTIC, 21, -6.707492887508e-01, 1.318792096608e-05, 2.6420e-01, 2.3990e-03, - 2DIAGNOSTIC, 22, -6.708948302838e-01, 2.157179416561e-05, 2.6660e-01, 2.3980e-03, - 2DIAGNOSTIC, 23, -6.712846498851e-01, 3.060888634886e-05, 2.6902e-01, 2.4180e-03, - 2DIAGNOSTIC, 24, -6.712448312825e-01, 3.522918878398e-05, 2.7252e-01, 3.5040e-03, - 2DIAGNOSTIC, 25, -6.714155620701e-01, 3.964891491139e-05, 2.7500e-01, 2.4760e-03, - 2DIAGNOSTIC, 26, -6.713932661206e-01, 3.824821469570e-05, 2.7708e-01, 2.0840e-03, - 2DIAGNOSTIC, 27, -6.711113995597e-01, 2.959801898229e-05, 2.7942e-01, 2.3391e-03, - 2DIAGNOSTIC, 28, -6.710388405112e-01, 1.924611901640e-05, 2.8156e-01, 2.1341e-03, - 2DIAGNOSTIC, 29, -6.709658936794e-01, 1.160420857663e-05, 2.8373e-01, 2.1689e-03, - 2DIAGNOSTIC, 30, -6.710160644905e-01, 2.343059458600e-06, 2.8584e-01, 2.1181e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.441123273896e-01, 1.797693134862e+308, 5.1399e-01, 2.2815e-01, - 2DIAGNOSTIC, 2, -5.454463118402e-01, 1.797693134862e+308, 5.2751e-01, 1.3518e-02, - 2DIAGNOSTIC, 3, -5.469451052532e-01, 1.797693134862e+308, 5.4099e-01, 1.3480e-02, - 2DIAGNOSTIC, 4, -5.481854511837e-01, 1.797693134862e+308, 5.5428e-01, 1.3286e-02, - 2DIAGNOSTIC, 5, -5.491113405576e-01, 1.797693134862e+308, 5.6895e-01, 1.4673e-02, - 2DIAGNOSTIC, 6, -5.495382971991e-01, 1.797693134862e+308, 5.8214e-01, 1.3194e-02, - 2DIAGNOSTIC, 7, -5.498005611883e-01, 1.797693134862e+308, 5.9936e-01, 1.7216e-02, - 2DIAGNOSTIC, 8, -5.502168348856e-01, 1.797693134862e+308, 6.2165e-01, 2.2289e-02, - 2DIAGNOSTIC, 9, -5.502246726525e-01, 1.797693134862e+308, 6.3475e-01, 1.3100e-02, - 2DIAGNOSTIC, 10, -5.503735696657e-01, 7.058027880812e-04, 6.5055e-01, 1.5799e-02, - 2DIAGNOSTIC, 11, -5.504954312608e-01, 4.755421840850e-04, 6.6604e-01, 1.5492e-02, - 2DIAGNOSTIC, 12, -5.505228061750e-01, 2.992166555797e-04, 6.8170e-01, 1.5657e-02, - 2DIAGNOSTIC, 13, -5.505494663545e-01, 1.831972002633e-04, 6.9552e-01, 1.3828e-02, - 2DIAGNOSTIC, 14, -5.506244348537e-01, 1.153616487843e-04, 7.1066e-01, 1.5137e-02, - 2DIAGNOSTIC, 15, -5.508268080215e-01, 8.497212774843e-05, 7.2456e-01, 1.3893e-02, - 2DIAGNOSTIC, 16, -5.508475234076e-01, 6.496625797985e-05, 7.4193e-01, 1.7373e-02, - 2DIAGNOSTIC, 17, -5.511243793997e-01, 5.770523629085e-05, 7.5831e-01, 1.6385e-02, - 2DIAGNOSTIC, 18, -5.512223492743e-01, 6.082664228269e-05, 8.0496e-01, 4.6646e-02, - 2DIAGNOSTIC, 19, -5.512223464315e-01, 5.826198782131e-05, 8.1909e-01, 1.4135e-02, - 2DIAGNOSTIC, 20, -5.512223550991e-01, 5.452636179563e-05, 8.3341e-01, 1.4316e-02, - 2DIAGNOSTIC, 21, -5.512223697666e-01, 4.922280688273e-05, 8.4787e-01, 1.4465e-02, - 2DIAGNOSTIC, 22, -5.512223945761e-01, 4.055361046476e-05, 8.6205e-01, 1.4173e-02, - 2DIAGNOSTIC, 23, -5.512224364999e-01, 2.953559388317e-05, 8.7612e-01, 1.4072e-02, - 2DIAGNOSTIC, 24, -5.512225072791e-01, 1.838522329528e-05, 8.9007e-01, 1.3948e-02, - 2DIAGNOSTIC, 25, -5.512226266423e-01, 1.080305678485e-05, 9.0432e-01, 1.4249e-02, - 2DIAGNOSTIC, 26, -5.512228275597e-01, 3.190730032285e-06, 9.1833e-01, 1.4015e-02, - 2DIAGNOSTIC, 27, -5.512231646888e-01, 1.209328588457e-06, 9.3174e-01, 1.3410e-02, - 2DIAGNOSTIC, 28, -5.512237278009e-01, 1.185102328334e-06, 9.4675e-01, 1.5012e-02, - 2DIAGNOSTIC, 29, -5.512246611188e-01, 1.174534647159e-06, 9.6026e-01, 1.3504e-02, - 2DIAGNOSTIC, 30, -5.512261885407e-01, 1.183698389348e-06, 9.7337e-01, 1.3114e-02, - 2DIAGNOSTIC, 31, -5.512285999833e-01, 1.220754779395e-06, 9.8743e-01, 1.4063e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.623710271853e-01, 1.797693134862e+308, 1.3895e+00, 4.0202e-01, - 2DIAGNOSTIC, 2, -4.630414669517e-01, 1.797693134862e+308, 1.4839e+00, 9.4441e-02, - 2DIAGNOSTIC, 3, -4.635902720358e-01, 1.797693134862e+308, 1.5794e+00, 9.5548e-02, - 2DIAGNOSTIC, 4, -4.638131734662e-01, 1.797693134862e+308, 1.6723e+00, 9.2899e-02, - 2DIAGNOSTIC, 5, -4.638604779844e-01, 1.797693134862e+308, 1.7663e+00, 9.3989e-02, - 2DIAGNOSTIC, 6, -4.639848370884e-01, 1.797693134862e+308, 1.9658e+00, 1.9946e-01, - 2DIAGNOSTIC, 7, -4.639827602678e-01, 1.797693134862e+308, 2.0656e+00, 9.9842e-02, - 2DIAGNOSTIC, 8, -4.639801189806e-01, 1.797693134862e+308, 2.1894e+00, 1.2373e-01, - 2DIAGNOSTIC, 9, -4.639781246232e-01, 1.797693134862e+308, 2.3040e+00, 1.1460e-01, - 2DIAGNOSTIC, 10, -4.639770624574e-01, 1.746749882072e-04, 2.4233e+00, 1.1935e-01, - 2DIAGNOSTIC, 11, -4.639758883893e-01, 8.333425550260e-05, 2.5174e+00, 9.4140e-02, - 2DIAGNOSTIC, 12, -4.639734984549e-01, 3.348491492626e-05, 2.6142e+00, 9.6791e-02, - 2DIAGNOSTIC, 13, -4.639738796066e-01, 1.424171444162e-05, 2.7114e+00, 9.7199e-02, - 2DIAGNOSTIC, 14, -4.639732095877e-01, 6.410274132035e-06, 2.8068e+00, 9.5354e-02, - 2DIAGNOSTIC, 15, -4.639755882834e-01, 1.127756137323e-06, 2.9135e+00, 1.0668e-01, - 2DIAGNOSTIC, 16, -4.639755406395e-01, 1.356634603253e-06, 3.0208e+00, 1.0731e-01, - 2DIAGNOSTIC, 17, -4.639750421607e-01, 1.527443736701e-06, 3.1420e+00, 1.2124e-01, - 2DIAGNOSTIC, 18, -4.639740540248e-01, 1.590350013958e-06, 3.2474e+00, 1.0541e-01, - 2DIAGNOSTIC, 19, -4.639731239176e-01, 1.568757707925e-06, 3.3554e+00, 1.0800e-01, - 2DIAGNOSTIC, 20, -4.639720921607e-01, 1.494421328532e-06, 3.4493e+00, 9.3848e-02, - 2DIAGNOSTIC, 21, -4.639712520562e-01, 1.379093547631e-06, 3.5406e+00, 9.1360e-02, - 2DIAGNOSTIC, 22, -4.639720444016e-01, 1.243262831109e-06, 3.6331e+00, 9.2460e-02, - 2DIAGNOSTIC, 23, -4.639707230088e-01, 1.113722107149e-06, 3.7219e+00, 8.8832e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.025272391528e-01, 1.797693134862e+308, 4.8702e+00, 1.1483e+00, - 2DIAGNOSTIC, 2, -4.028854242878e-01, 1.797693134862e+308, 5.5486e+00, 6.7839e-01, - 2DIAGNOSTIC, 3, -4.028845405175e-01, 1.797693134862e+308, 6.4164e+00, 8.6780e-01, - 2DIAGNOSTIC, 4, -4.028837205991e-01, 1.797693134862e+308, 7.3040e+00, 8.8757e-01, - 2DIAGNOSTIC, 5, -4.028835860027e-01, 1.797693134862e+308, 7.9268e+00, 6.2285e-01, - 2DIAGNOSTIC, 6, -4.028834128596e-01, 1.797693134862e+308, 8.5557e+00, 6.2884e-01, - 2DIAGNOSTIC, 7, -4.028833794155e-01, 1.797693134862e+308, 9.1180e+00, 5.6230e-01, - 2DIAGNOSTIC, 8, -4.028831683762e-01, 1.797693134862e+308, 9.7220e+00, 6.0405e-01, - 2DIAGNOSTIC, 9, -4.028832187231e-01, 1.797693134862e+308, 1.0267e+01, 5.4544e-01, - 2DIAGNOSTIC, 10, -4.028830243223e-01, 2.806486349205e-05, 1.0883e+01, 6.1531e-01, - 2DIAGNOSTIC, 11, -4.028828199947e-01, 2.604609915677e-06, 1.1495e+01, 6.1246e-01, - 2DIAGNOSTIC, 12, -4.028828864839e-01, 2.476958308142e-06, 1.2044e+01, 5.4871e-01, - 2DIAGNOSTIC, 13, -4.028825099459e-01, 2.317084634940e-06, 1.2616e+01, 5.7174e-01, - 2DIAGNOSTIC, 14, -4.028824211965e-01, 2.146580474358e-06, 1.3140e+01, 5.2443e-01, - 2DIAGNOSTIC, 15, -4.028823677211e-01, 2.001632680160e-06, 1.3752e+01, 6.1211e-01, - 2DIAGNOSTIC, 16, -4.028824312026e-01, 1.880784209554e-06, 1.4358e+01, 6.0592e-01, - 2DIAGNOSTIC, 17, -4.028823323957e-01, 1.778584018744e-06, 1.4899e+01, 5.4089e-01, - 2DIAGNOSTIC, 18, -4.028822620144e-01, 1.685351931832e-06, 1.5444e+01, 5.4450e-01, - 2DIAGNOSTIC, 19, -4.028822399411e-01, 1.610918396296e-06, 1.6055e+01, 6.1136e-01, - 2DIAGNOSTIC, 20, -4.028818478300e-01, 1.529117762529e-06, 1.6758e+01, 7.0304e-01, - 2DIAGNOSTIC, 21, -4.028817642380e-01, 1.451207104257e-06, 1.7311e+01, 5.5331e-01, - 2DIAGNOSTIC, 22, -4.028815798737e-01, 1.382791166210e-06, 1.7917e+01, 6.0551e-01, - 2DIAGNOSTIC, 23, -4.028813703648e-01, 1.308334781479e-06, 1.8453e+01, 5.3655e-01, - 2DIAGNOSTIC, 24, -4.028813497225e-01, 1.244028385937e-06, 1.9060e+01, 6.0680e-01, - 2DIAGNOSTIC, 25, -4.028814149707e-01, 1.192786318070e-06, 1.9568e+01, 5.0773e-01, - 2DIAGNOSTIC, 26, -4.028812458716e-01, 1.150103167653e-06, 2.0229e+01, 6.6107e-01, - 2DIAGNOSTIC, 27, -4.028813061126e-01, 1.116613980438e-06, 2.0834e+01, 6.0474e-01, - 2DIAGNOSTIC, 28, -4.028812051555e-01, 1.086910177098e-06, 2.1408e+01, 5.7471e-01, - 2DIAGNOSTIC, 29, -4.028810904312e-01, 1.060791373339e-06, 2.1941e+01, 5.3289e-01, - 2DIAGNOSTIC, 30, -4.028809668216e-01, 1.027689397470e-06, 2.2414e+01, 4.7248e-01, - Elapsed time (stage 0): 2.2767e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.577875438396e-01, 1.797693134862e+308, 1.8481e-01, 1.8481e-01, - 2DIAGNOSTIC, 2, -6.595252864099e-01, 1.797693134862e+308, 1.8668e-01, 1.8709e-03, - 2DIAGNOSTIC, 3, -6.621102995054e-01, 1.797693134862e+308, 1.8854e-01, 1.8539e-03, - 2DIAGNOSTIC, 4, -6.649848182798e-01, 1.797693134862e+308, 1.9041e-01, 1.8709e-03, - 2DIAGNOSTIC, 5, -6.671859663805e-01, 1.797693134862e+308, 1.9234e-01, 1.9360e-03, - 2DIAGNOSTIC, 6, -6.683726021056e-01, 1.797693134862e+308, 1.9451e-01, 2.1639e-03, - 2DIAGNOSTIC, 7, -6.691082764575e-01, 1.797693134862e+308, 1.9721e-01, 2.7049e-03, - 2DIAGNOSTIC, 8, -6.691766900702e-01, 1.797693134862e+308, 1.9910e-01, 1.8868e-03, - 2DIAGNOSTIC, 9, -6.693799788990e-01, 1.797693134862e+308, 2.0114e-01, 2.0390e-03, - 2DIAGNOSTIC, 10, -6.694887418460e-01, 1.172656208284e-03, 2.0374e-01, 2.5978e-03, - 2DIAGNOSTIC, 11, -6.695846837586e-01, 8.036242842928e-04, 2.0611e-01, 2.3720e-03, - 2DIAGNOSTIC, 12, -6.697238846522e-01, 4.906657231484e-04, 2.0873e-01, 2.6200e-03, - 2DIAGNOSTIC, 13, -6.699930363342e-01, 2.742411934289e-04, 2.1222e-01, 3.4919e-03, - 2DIAGNOSTIC, 14, -6.700022565970e-01, 1.506044402978e-04, 2.1496e-01, 2.7349e-03, - 2DIAGNOSTIC, 15, -6.700144753753e-01, 9.223533711976e-05, 2.1771e-01, 2.7552e-03, - 2DIAGNOSTIC, 16, -6.700306918902e-01, 6.454295772840e-05, 2.2057e-01, 2.8570e-03, - 2DIAGNOSTIC, 17, -6.700530034112e-01, 5.330981327165e-05, 2.2317e-01, 2.6021e-03, - 2DIAGNOSTIC, 18, -6.700595872369e-01, 4.015674516624e-05, 2.2604e-01, 2.8720e-03, - 2DIAGNOSTIC, 19, -6.700617471730e-01, 2.942687667649e-05, 2.2867e-01, 2.6300e-03, - 2DIAGNOSTIC, 20, -6.700637731676e-01, 1.962535179970e-05, 2.3127e-01, 2.5930e-03, - 2DIAGNOSTIC, 21, -6.700644581082e-01, 1.102007119586e-05, 2.3350e-01, 2.2390e-03, - 2DIAGNOSTIC, 22, -6.700648841972e-01, 4.861235301371e-06, 2.3664e-01, 3.1371e-03, - 2DIAGNOSTIC, 23, -6.700651325048e-01, 3.902465641498e-06, 2.3889e-01, 2.2521e-03, - 2DIAGNOSTIC, 24, -6.700660253989e-01, 2.969924704908e-06, 2.4157e-01, 2.6720e-03, - 2DIAGNOSTIC, 25, -6.700665370614e-01, 2.172151095138e-06, 2.4474e-01, 3.1722e-03, - 2DIAGNOSTIC, 26, -6.700669704053e-01, 1.614993297747e-06, 2.4792e-01, 3.1791e-03, - 2DIAGNOSTIC, 27, -6.700677588859e-01, 1.424330832007e-06, 2.5110e-01, 3.1822e-03, - 2DIAGNOSTIC, 28, -6.700683890539e-01, 1.333240194974e-06, 2.5494e-01, 3.8440e-03, - 2DIAGNOSTIC, 29, -6.700685937675e-01, 1.263834064298e-06, 2.5729e-01, 2.3439e-03, - 2DIAGNOSTIC, 30, -6.700687308028e-01, 1.214035813150e-06, 2.5959e-01, 2.3000e-03, - 2DIAGNOSTIC, 31, -6.702035312085e-01, 3.010807367677e-06, 2.6226e-01, 2.6689e-03, - 2DIAGNOSTIC, 32, -6.702043752346e-01, 4.472855166790e-06, 2.6485e-01, 2.5909e-03, - 2DIAGNOSTIC, 33, -6.702044808006e-01, 5.541201404002e-06, 2.6770e-01, 2.8489e-03, - 2DIAGNOSTIC, 34, -6.702046765444e-01, 6.153360562422e-06, 2.6997e-01, 2.2750e-03, - 2DIAGNOSTIC, 35, -6.702048889450e-01, 6.237680872958e-06, 2.7223e-01, 2.2559e-03, - 2DIAGNOSTIC, 36, -6.702051727894e-01, 5.792183265668e-06, 2.7445e-01, 2.2199e-03, - 2DIAGNOSTIC, 37, -6.702058751956e-01, 4.914803281922e-06, 2.7701e-01, 2.5651e-03, - 2DIAGNOSTIC, 38, -6.702066429654e-01, 3.737616639243e-06, 2.8094e-01, 3.9239e-03, - 2DIAGNOSTIC, 39, -6.703410626266e-01, 3.828794559676e-06, 2.8421e-01, 3.2759e-03, - 2DIAGNOSTIC, 40, -6.703410644734e-01, 3.548083342894e-06, 2.8688e-01, 2.6650e-03, - 2DIAGNOSTIC, 41, -6.703410654990e-01, 4.431881046756e-06, 2.8948e-01, 2.6000e-03, - 2DIAGNOSTIC, 42, -6.703410664484e-01, 4.955144834454e-06, 2.9211e-01, 2.6300e-03, - 2DIAGNOSTIC, 43, -6.703410670444e-01, 5.049031523506e-06, 2.9483e-01, 2.7282e-03, - 2DIAGNOSTIC, 44, -6.703410676012e-01, 4.706930168779e-06, 2.9731e-01, 2.4772e-03, - 2DIAGNOSTIC, 45, -6.703410684104e-01, 3.996530959706e-06, 2.9975e-01, 2.4419e-03, - 2DIAGNOSTIC, 46, -6.703410704850e-01, 3.025206851231e-06, 3.0235e-01, 2.6000e-03, - 2DIAGNOSTIC, 47, -6.703410790595e-01, 1.892869637331e-06, 3.0497e-01, 2.6190e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.488022115995e-01, 1.797693134862e+308, 5.0998e-01, 2.0501e-01, - 2DIAGNOSTIC, 2, -5.496526968615e-01, 1.797693134862e+308, 5.2226e-01, 1.2278e-02, - 2DIAGNOSTIC, 3, -5.505074276533e-01, 1.797693134862e+308, 5.3532e-01, 1.3066e-02, - 2DIAGNOSTIC, 4, -5.511397605560e-01, 1.797693134862e+308, 5.4942e-01, 1.4094e-02, - 2DIAGNOSTIC, 5, -5.514751637766e-01, 1.797693134862e+308, 5.6350e-01, 1.4086e-02, - 2DIAGNOSTIC, 6, -5.517839275967e-01, 1.797693134862e+308, 5.7756e-01, 1.4054e-02, - 2DIAGNOSTIC, 7, -5.520848704617e-01, 1.797693134862e+308, 5.9541e-01, 1.7847e-02, - 2DIAGNOSTIC, 8, -5.524090828096e-01, 1.797693134862e+308, 6.1136e-01, 1.5956e-02, - 2DIAGNOSTIC, 9, -5.526531652448e-01, 1.797693134862e+308, 6.2755e-01, 1.6185e-02, - 2DIAGNOSTIC, 10, -5.527858823372e-01, 4.378668525044e-04, 6.4504e-01, 1.7494e-02, - 2DIAGNOSTIC, 11, -5.529900516154e-01, 3.250446052452e-04, 6.6170e-01, 1.6658e-02, - 2DIAGNOSTIC, 12, -5.530628590832e-01, 2.410136605357e-04, 6.7750e-01, 1.5797e-02, - 2DIAGNOSTIC, 13, -5.530919720904e-01, 1.828907156968e-04, 6.9442e-01, 1.6921e-02, - 2DIAGNOSTIC, 14, -5.531085105635e-01, 1.404478213386e-04, 7.0865e-01, 1.4233e-02, - 2DIAGNOSTIC, 15, -5.531432646130e-01, 1.036751417336e-04, 7.2295e-01, 1.4297e-02, - 2DIAGNOSTIC, 16, -5.531661573545e-01, 7.270039086128e-05, 7.3722e-01, 1.4276e-02, - 2DIAGNOSTIC, 17, -5.531960899764e-01, 4.869854777879e-05, 7.5609e-01, 1.8872e-02, - 2DIAGNOSTIC, 18, -5.532430512789e-01, 3.357486118843e-05, 7.7556e-01, 1.9469e-02, - 2DIAGNOSTIC, 19, -5.532585478699e-01, 2.409628559467e-05, 7.8950e-01, 1.3939e-02, - 2DIAGNOSTIC, 20, -5.532739013284e-01, 1.717536522978e-05, 8.0390e-01, 1.4398e-02, - 2DIAGNOSTIC, 21, -5.532919314665e-01, 1.486943096828e-05, 8.1805e-01, 1.4148e-02, - 2DIAGNOSTIC, 22, -5.533269662189e-01, 1.402779352918e-05, 8.3610e-01, 1.8050e-02, - 2DIAGNOSTIC, 23, -5.533299727759e-01, 1.277474277539e-05, 8.5954e-01, 2.3441e-02, - 2DIAGNOSTIC, 24, -5.533264057267e-01, 1.083468685242e-05, 8.7429e-01, 1.4750e-02, - 2DIAGNOSTIC, 25, -5.533283359080e-01, 8.928625531646e-06, 8.8881e-01, 1.4518e-02, - 2DIAGNOSTIC, 26, -5.533309332282e-01, 6.942347137689e-06, 9.0384e-01, 1.5030e-02, - 2DIAGNOSTIC, 27, -5.533338328876e-01, 5.158270224945e-06, 9.1827e-01, 1.4431e-02, - 2DIAGNOSTIC, 28, -5.533363059122e-01, 4.031847967434e-06, 9.3276e-01, 1.4497e-02, - 2DIAGNOSTIC, 29, -5.533375327374e-01, 3.013532598017e-06, 9.4633e-01, 1.3569e-02, - 2DIAGNOSTIC, 30, -5.533268973509e-01, 1.962454217130e-06, 9.6577e-01, 1.9438e-02, - 2DIAGNOSTIC, 31, -5.533269875830e-01, 1.182528768455e-06, 9.8218e-01, 1.6405e-02, - 2DIAGNOSTIC, 32, -5.533274323662e-01, 1.002459198124e-06, 9.9633e-01, 1.4151e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.649943523783e-01, 1.797693134862e+308, 1.4142e+00, 4.1788e-01, - 2DIAGNOSTIC, 2, -4.656846469730e-01, 1.797693134862e+308, 1.5143e+00, 1.0005e-01, - 2DIAGNOSTIC, 3, -4.662015602663e-01, 1.797693134862e+308, 1.6166e+00, 1.0239e-01, - 2DIAGNOSTIC, 4, -4.664166072521e-01, 1.797693134862e+308, 1.7176e+00, 1.0093e-01, - 2DIAGNOSTIC, 5, -4.664953025274e-01, 1.797693134862e+308, 1.8186e+00, 1.0105e-01, - 2DIAGNOSTIC, 6, -4.665855689095e-01, 1.797693134862e+308, 1.9177e+00, 9.9047e-02, - 2DIAGNOSTIC, 7, -4.667536935497e-01, 1.797693134862e+308, 2.0181e+00, 1.0047e-01, - 2DIAGNOSTIC, 8, -4.668505209882e-01, 1.797693134862e+308, 2.2008e+00, 1.8269e-01, - 2DIAGNOSTIC, 9, -4.668644028117e-01, 1.797693134862e+308, 2.3146e+00, 1.1376e-01, - 2DIAGNOSTIC, 10, -4.668659628115e-01, 2.183124954832e-04, 2.4178e+00, 1.0316e-01, - 2DIAGNOSTIC, 11, -4.668736005562e-01, 1.290494608646e-04, 2.5176e+00, 9.9824e-02, - 2DIAGNOSTIC, 12, -4.668959595448e-01, 7.881659865200e-05, 2.6192e+00, 1.0158e-01, - 2DIAGNOSTIC, 13, -4.669395249475e-01, 5.540023393703e-05, 2.7320e+00, 1.1281e-01, - 2DIAGNOSTIC, 14, -4.669489462132e-01, 4.029560618152e-05, 2.8340e+00, 1.0200e-01, - 2DIAGNOSTIC, 15, -4.669866012173e-01, 2.852274736451e-05, 2.9624e+00, 1.2844e-01, - 2DIAGNOSTIC, 16, -4.670035424549e-01, 1.973486435955e-05, 3.0760e+00, 1.1359e-01, - 2DIAGNOSTIC, 17, -4.670066990624e-01, 1.637641814416e-05, 3.2174e+00, 1.4139e-01, - 2DIAGNOSTIC, 18, -4.670059637878e-01, 1.529020177558e-05, 3.3321e+00, 1.1474e-01, - 2DIAGNOSTIC, 19, -4.670038449747e-01, 1.345158474941e-05, 3.4868e+00, 1.5468e-01, - 2DIAGNOSTIC, 20, -4.670038526550e-01, 1.075441138408e-05, 3.8325e+00, 3.4575e-01, - 2DIAGNOSTIC, 21, -4.670038526550e-01, 7.669494089813e-06, 4.0609e+00, 2.2835e-01, - 2DIAGNOSTIC, 22, -4.670038526550e-01, 4.891021495972e-06, 4.1640e+00, 1.0311e-01, - 2DIAGNOSTIC, 23, -4.670038526550e-01, 3.197947573530e-06, 4.2771e+00, 1.1307e-01, - 2DIAGNOSTIC, 24, -4.670038526550e-01, 1.695111572692e-06, 4.3922e+00, 1.1513e-01, - 2DIAGNOSTIC, 25, -4.670038526550e-01, 1.184095748480e-06, 4.5064e+00, 1.1423e-01, - 2DIAGNOSTIC, 26, -4.670038526550e-01, 1.114408910478e-06, 4.6333e+00, 1.2685e-01, - 2DIAGNOSTIC, 27, -4.670038526550e-01, 1.131312119408e-06, 4.7455e+00, 1.1217e-01, - 2DIAGNOSTIC, 28, -4.670038526550e-01, 1.136817736926e-06, 4.8592e+00, 1.1373e-01, - 2DIAGNOSTIC, 29, -4.670038526550e-01, 1.097436480309e-06, 4.9763e+00, 1.1712e-01, - 2DIAGNOSTIC, 30, -4.670038526550e-01, 1.060837773660e-06, 5.1027e+00, 1.2635e-01, - 2DIAGNOSTIC, 31, -4.670038526550e-01, 1.026601365431e-06, 5.2065e+00, 1.0388e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.029192694637e-01, 1.797693134862e+308, 6.4610e+00, 1.2544e+00, - 2DIAGNOSTIC, 2, -4.032746917778e-01, 1.797693134862e+308, 7.0778e+00, 6.1685e-01, - 2DIAGNOSTIC, 3, -4.034461185351e-01, 1.797693134862e+308, 7.6699e+00, 5.9210e-01, - 2DIAGNOSTIC, 4, -4.035571030349e-01, 1.797693134862e+308, 8.5965e+00, 9.2654e-01, - 2DIAGNOSTIC, 5, -4.035612096193e-01, 1.797693134862e+308, 9.2666e+00, 6.7013e-01, - 2DIAGNOSTIC, 6, -4.035602217701e-01, 1.797693134862e+308, 1.0010e+01, 7.4314e-01, - 2DIAGNOSTIC, 7, -4.035601350812e-01, 1.797693134862e+308, 1.0768e+01, 7.5785e-01, - 2DIAGNOSTIC, 8, -4.035597336600e-01, 1.797693134862e+308, 1.1445e+01, 6.7694e-01, - 2DIAGNOSTIC, 9, -4.035595877634e-01, 1.797693134862e+308, 1.2124e+01, 6.7993e-01, - 2DIAGNOSTIC, 10, -4.035594878274e-01, 7.152101004268e-05, 1.2807e+01, 6.8207e-01, - 2DIAGNOSTIC, 11, -4.035592361893e-01, 2.752266736589e-05, 1.3402e+01, 5.9544e-01, - 2DIAGNOSTIC, 12, -4.035592827245e-01, 9.311363522266e-06, 1.4075e+01, 6.7301e-01, - 2DIAGNOSTIC, 13, -4.035599039994e-01, 2.452788826726e-06, 1.4693e+01, 6.1789e-01, - 2DIAGNOSTIC, 14, -4.035603926871e-01, 2.174854206755e-06, 1.5279e+01, 5.8628e-01, - 2DIAGNOSTIC, 15, -4.035601077373e-01, 2.123217074698e-06, 1.5885e+01, 6.0539e-01, - 2DIAGNOSTIC, 16, -4.035598636642e-01, 2.024652966226e-06, 1.6469e+01, 5.8442e-01, - 2DIAGNOSTIC, 17, -4.035605518084e-01, 1.959994885142e-06, 1.7021e+01, 5.5174e-01, - 2DIAGNOSTIC, 18, -4.035605089573e-01, 1.875358497272e-06, 1.7670e+01, 6.4889e-01, - 2DIAGNOSTIC, 19, -4.035604777181e-01, 1.782943273743e-06, 1.8343e+01, 6.7369e-01, - 2DIAGNOSTIC, 20, -4.035601497803e-01, 1.675795770262e-06, 1.9019e+01, 6.7578e-01, - 2DIAGNOSTIC, 21, -4.035612574034e-01, 1.600474549085e-06, 1.9688e+01, 6.6945e-01, - 2DIAGNOSTIC, 22, -4.035611939814e-01, 1.521451020219e-06, 2.0298e+01, 6.0942e-01, - 2DIAGNOSTIC, 23, -4.035610547898e-01, 1.456601578881e-06, 2.0982e+01, 6.8379e-01, - 2DIAGNOSTIC, 24, -4.035614489667e-01, 1.417348706650e-06, 2.1671e+01, 6.8899e-01, - 2DIAGNOSTIC, 25, -4.035611991400e-01, 1.357610042774e-06, 2.2421e+01, 7.5047e-01, - 2DIAGNOSTIC, 26, -4.035608121054e-01, 1.276601457149e-06, 2.3101e+01, 6.7955e-01, - 2DIAGNOSTIC, 27, -4.035610345204e-01, 1.220546244171e-06, 2.3850e+01, 7.4898e-01, - 2DIAGNOSTIC, 28, -4.035605190731e-01, 1.150489356699e-06, 2.4522e+01, 6.7262e-01, - 2DIAGNOSTIC, 29, -4.035611608338e-01, 1.099411130120e-06, 2.5146e+01, 6.2380e-01, - 2DIAGNOSTIC, 30, -4.035611041933e-01, 1.041270794623e-06, 2.5942e+01, 7.9544e-01, - 2DIAGNOSTIC, 31, -4.035606602318e-01, 1.004094952246e-06, 2.6701e+01, 7.5958e-01, - Elapsed time (stage 1): 2.7114e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.980223681840e-01, 1.797693134862e+308, 2.4934e-01, 2.4934e-01, - 1DIAGNOSTIC, 2, -9.057461300094e-01, 1.797693134862e+308, 3.4332e-01, 9.3976e-02, - 1DIAGNOSTIC, 3, -9.121264458104e-01, 1.797693134862e+308, 4.3764e-01, 9.4320e-02, - 1DIAGNOSTIC, 4, -9.175055338686e-01, 1.797693134862e+308, 5.2950e-01, 9.1861e-02, - 1DIAGNOSTIC, 5, -9.215893800190e-01, 1.797693134862e+308, 6.2775e-01, 9.8250e-02, - 1DIAGNOSTIC, 6, -9.250203459582e-01, 1.797693134862e+308, 7.2003e-01, 9.2283e-02, - 1DIAGNOSTIC, 7, -9.279387428045e-01, 1.797693134862e+308, 8.1389e-01, 9.3859e-02, - 1DIAGNOSTIC, 8, -9.304875792819e-01, 1.797693134862e+308, 9.0632e-01, 9.2432e-02, - 1DIAGNOSTIC, 9, -9.327544951388e-01, 1.797693134862e+308, 1.0019e+00, 9.5587e-02, - 1DIAGNOSTIC, 10, -9.347483675048e-01, 2.431297265576e-03, 1.0992e+00, 9.7270e-02, - 1DIAGNOSTIC, 11, -9.364693115545e-01, 1.847544613995e-03, 1.1917e+00, 9.2519e-02, - 1DIAGNOSTIC, 12, -9.379534984686e-01, 1.430459738640e-03, 1.2870e+00, 9.5265e-02, - 1DIAGNOSTIC, 13, -9.392620368567e-01, 1.129037285121e-03, 1.3856e+00, 9.8676e-02, - 1DIAGNOSTIC, 14, -9.403146142830e-01, 9.084399808171e-04, 1.4769e+00, 9.1283e-02, - 1DIAGNOSTIC, 15, -9.413857076342e-01, 7.391570961153e-04, 1.5670e+00, 9.0068e-02, - 1DIAGNOSTIC, 16, -9.422218886183e-01, 6.044546143184e-04, 1.6620e+00, 9.4980e-02, - 1DIAGNOSTIC, 17, -9.429366259351e-01, 4.950271000067e-04, 1.7557e+00, 9.3757e-02, - 1DIAGNOSTIC, 18, -9.436064869179e-01, 4.064470942260e-04, 1.8452e+00, 8.9438e-02, - 1DIAGNOSTIC, 19, -9.442304623528e-01, 3.357572103193e-04, 1.9397e+00, 9.4514e-02, - 1DIAGNOSTIC, 20, -9.448228064261e-01, 2.801773801957e-04, 2.0327e+00, 9.3057e-02, - 1DIAGNOSTIC, 21, -9.453755052490e-01, 2.366361598386e-04, 2.1319e+00, 9.9176e-02, - 1DIAGNOSTIC, 22, -9.458924060764e-01, 2.025697462182e-04, 2.2389e+00, 1.0696e-01, - 1DIAGNOSTIC, 23, -9.463563691135e-01, 1.759333789175e-04, 2.3379e+00, 9.9002e-02, - 1DIAGNOSTIC, 24, -9.468075021488e-01, 1.539870014121e-04, 2.4434e+00, 1.0549e-01, - 1DIAGNOSTIC, 25, -9.472418382095e-01, 1.375996034962e-04, 2.5384e+00, 9.4993e-02, - 1DIAGNOSTIC, 26, -9.476601150646e-01, 1.241699678582e-04, 2.6394e+00, 1.0105e-01, - 1DIAGNOSTIC, 27, -9.480595468099e-01, 1.125593437406e-04, 2.7395e+00, 1.0013e-01, - 1DIAGNOSTIC, 28, -9.484401099325e-01, 1.025498374810e-04, 2.8346e+00, 9.5049e-02, - 1DIAGNOSTIC, 29, -9.487992610202e-01, 9.383359986732e-05, 2.9298e+00, 9.5193e-02, - 1DIAGNOSTIC, 30, -9.491320050202e-01, 8.618105116601e-05, 3.0307e+00, 1.0094e-01, - 1DIAGNOSTIC, 31, -9.494378289694e-01, 7.926855821183e-05, 3.1255e+00, 9.4792e-02, - 1DIAGNOSTIC, 32, -9.497267127279e-01, 7.292981248088e-05, 3.2241e+00, 9.8575e-02, - 1DIAGNOSTIC, 33, -9.499962254615e-01, 6.681201429608e-05, 3.3227e+00, 9.8622e-02, - 1DIAGNOSTIC, 34, -9.502519255428e-01, 6.103006944239e-05, 3.4196e+00, 9.6913e-02, - 1DIAGNOSTIC, 35, -9.504946090612e-01, 5.566092031670e-05, 3.5188e+00, 9.9151e-02, - 1DIAGNOSTIC, 36, -9.507199463818e-01, 5.073542535156e-05, 3.6167e+00, 9.7885e-02, - 1DIAGNOSTIC, 37, -9.509212574190e-01, 4.618974495961e-05, 3.7150e+00, 9.8354e-02, - 1DIAGNOSTIC, 38, -9.511020205651e-01, 4.198489837919e-05, 3.8130e+00, 9.7982e-02, - 1DIAGNOSTIC, 39, -9.512640268010e-01, 3.807037689344e-05, 3.9133e+00, 1.0027e-01, - 1DIAGNOSTIC, 40, -9.513898505575e-01, 3.422411120427e-05, 4.0148e+00, 1.0154e-01, - 1DIAGNOSTIC, 41, -9.515243448752e-01, 3.058845433808e-05, 4.1151e+00, 1.0025e-01, - 1DIAGNOSTIC, 42, -9.516405733523e-01, 2.715945781123e-05, 4.2174e+00, 1.0232e-01, - 1DIAGNOSTIC, 43, -9.517461291959e-01, 2.397215888835e-05, 4.3211e+00, 1.0375e-01, - 1DIAGNOSTIC, 44, -9.518258871865e-01, 2.098521436151e-05, 4.4238e+00, 1.0267e-01, - 1DIAGNOSTIC, 45, -9.519203624023e-01, 1.843503615264e-05, 4.5239e+00, 1.0012e-01, - 1DIAGNOSTIC, 46, -9.519366783988e-01, 1.586032992999e-05, 4.6335e+00, 1.0956e-01, - 1DIAGNOSTIC, 47, -9.520111223543e-01, 1.370263280525e-05, 4.7299e+00, 9.6423e-02, - 1DIAGNOSTIC, 48, -9.518456033076e-01, 1.046094354096e-05, 4.8300e+00, 1.0012e-01, - 1DIAGNOSTIC, 49, -9.516229106075e-01, 6.064242779255e-06, 4.9328e+00, 1.0283e-01, - 1DIAGNOSTIC, 50, -9.512666198792e-01, -4.582349117169e-08, 5.0423e+00, 1.0948e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.998137617464e-01, 1.797693134862e+308, 5.9020e+00, 8.5965e-01, - 1DIAGNOSTIC, 2, -9.048971393624e-01, 1.797693134862e+308, 6.5681e+00, 6.6611e-01, - 1DIAGNOSTIC, 3, -9.084228611737e-01, 1.797693134862e+308, 7.2091e+00, 6.4097e-01, - 1DIAGNOSTIC, 4, -9.113168215974e-01, 1.797693134862e+308, 7.8608e+00, 6.5175e-01, - 1DIAGNOSTIC, 5, -9.136165401585e-01, 1.797693134862e+308, 8.5152e+00, 6.5441e-01, - 1DIAGNOSTIC, 6, -9.156299140733e-01, 1.797693134862e+308, 9.1557e+00, 6.4045e-01, - 1DIAGNOSTIC, 7, -9.172643417498e-01, 1.797693134862e+308, 9.8199e+00, 6.6419e-01, - 1DIAGNOSTIC, 8, -9.185653339680e-01, 1.797693134862e+308, 1.0492e+01, 6.7172e-01, - 1DIAGNOSTIC, 9, -9.197047415669e-01, 1.797693134862e+308, 1.1131e+01, 6.3963e-01, - 1DIAGNOSTIC, 10, -9.207193216752e-01, 1.375116883001e-03, 1.1802e+01, 6.7107e-01, - 1DIAGNOSTIC, 11, -9.216301347064e-01, 1.019244048179e-03, 1.2464e+01, 6.6150e-01, - 1DIAGNOSTIC, 12, -9.224430964666e-01, 7.830878718779e-04, 1.3126e+01, 6.6251e-01, - 1DIAGNOSTIC, 13, -9.231961511809e-01, 6.141109131949e-04, 1.3794e+01, 6.6784e-01, - 1DIAGNOSTIC, 14, -9.238872831641e-01, 4.925158109516e-04, 1.4463e+01, 6.6902e-01, - 1DIAGNOSTIC, 15, -9.245395814120e-01, 4.027507137498e-04, 1.5142e+01, 6.7888e-01, - 1DIAGNOSTIC, 16, -9.251571768638e-01, 3.379020085032e-04, 1.5794e+01, 6.5192e-01, - 1DIAGNOSTIC, 17, -9.257389565172e-01, 2.897501617873e-04, 1.6459e+01, 6.6501e-01, - 1DIAGNOSTIC, 18, -9.262929755837e-01, 2.519274832119e-04, 1.7134e+01, 6.7486e-01, - 1DIAGNOSTIC, 19, -9.268241650032e-01, 2.218197410704e-04, 1.7793e+01, 6.5929e-01, - 1DIAGNOSTIC, 20, -9.273311525365e-01, 1.975357055133e-04, 1.8437e+01, 6.4369e-01, - 1DIAGNOSTIC, 21, -9.278172946519e-01, 1.776507275752e-04, 1.9078e+01, 6.4153e-01, - 1DIAGNOSTIC, 22, -9.282875047383e-01, 1.609483541255e-04, 1.9758e+01, 6.7945e-01, - 1DIAGNOSTIC, 23, -9.287451771824e-01, 1.468545320714e-04, 2.0426e+01, 6.6872e-01, - 1DIAGNOSTIC, 24, -9.291754507995e-01, 1.345576280887e-04, 2.1072e+01, 6.4539e-01, - 1DIAGNOSTIC, 25, -9.295894480797e-01, 1.237480144887e-04, 2.1723e+01, 6.5154e-01, - 1DIAGNOSTIC, 26, -9.300028200394e-01, 1.143482998489e-04, 2.2393e+01, 6.7004e-01, - 1DIAGNOSTIC, 27, -9.303998553920e-01, 1.060366829875e-04, 2.3039e+01, 6.4527e-01, - 1DIAGNOSTIC, 28, -9.307792504028e-01, 9.858313851903e-05, 2.3676e+01, 6.3689e-01, - 1DIAGNOSTIC, 29, -9.311411471430e-01, 9.182377788069e-05, 2.4349e+01, 6.7348e-01, - 1DIAGNOSTIC, 30, -9.314685970858e-01, 8.540730685565e-05, 2.4979e+01, 6.2955e-01, - 1DIAGNOSTIC, 31, -9.317708420659e-01, 7.916252763050e-05, 2.5615e+01, 6.3623e-01, - 1DIAGNOSTIC, 32, -9.320500307881e-01, 7.302761982955e-05, 2.6289e+01, 6.7454e-01, - 1DIAGNOSTIC, 33, -9.323092286289e-01, 6.704166493660e-05, 2.6945e+01, 6.5525e-01, - 1DIAGNOSTIC, 34, -9.325461268585e-01, 6.110302641988e-05, 2.7612e+01, 6.6736e-01, - 1DIAGNOSTIC, 35, -9.327558017938e-01, 5.520310498873e-05, 2.8286e+01, 6.7403e-01, - 1DIAGNOSTIC, 36, -9.329581567925e-01, 4.967106316150e-05, 2.8954e+01, 6.6795e-01, - 1DIAGNOSTIC, 37, -9.331481146348e-01, 4.461564632789e-05, 2.9619e+01, 6.6547e-01, - 1DIAGNOSTIC, 38, -9.333188959780e-01, 4.005356533870e-05, 3.0296e+01, 6.7603e-01, - 1DIAGNOSTIC, 39, -9.334853487981e-01, 3.610538307804e-05, 3.0974e+01, 6.7829e-01, - 1DIAGNOSTIC, 40, -9.336460615705e-01, 3.269657215538e-05, 3.1636e+01, 6.6229e-01, - 1DIAGNOSTIC, 41, -9.337891790977e-01, 2.970600630747e-05, 3.2310e+01, 6.7398e-01, - 1DIAGNOSTIC, 42, -9.339246608725e-01, 2.709173990441e-05, 3.2963e+01, 6.5251e-01, - 1DIAGNOSTIC, 43, -9.340486447909e-01, 2.478754253904e-05, 3.3620e+01, 6.5751e-01, - 1DIAGNOSTIC, 44, -9.341599774620e-01, 2.269198818678e-05, 3.4256e+01, 6.3578e-01, - 1DIAGNOSTIC, 45, -9.342718247138e-01, 2.075512248737e-05, 3.4892e+01, 6.3632e-01, - 1DIAGNOSTIC, 46, -9.343694452339e-01, 1.895975123143e-05, 3.5536e+01, 6.4368e-01, - 1DIAGNOSTIC, 47, -9.344717635025e-01, 1.738034824295e-05, 3.6215e+01, 6.7943e-01, - 1DIAGNOSTIC, 48, -9.345641790313e-01, 1.592812534689e-05, 3.6873e+01, 6.5740e-01, - 1DIAGNOSTIC, 49, -9.346455855891e-01, 1.460459001016e-05, 3.7533e+01, 6.6075e-01, - 1DIAGNOSTIC, 50, -9.347307824310e-01, 1.348905714093e-05, 3.8209e+01, 6.7551e-01, - 1DIAGNOSTIC, 51, -9.348120980778e-01, 1.251696890947e-05, 3.8867e+01, 6.5771e-01, - 1DIAGNOSTIC, 52, -9.348885639865e-01, 1.167508481720e-05, 3.9537e+01, 6.7077e-01, - 1DIAGNOSTIC, 53, -9.349615173912e-01, 1.092946664032e-05, 4.0206e+01, 6.6874e-01, - 1DIAGNOSTIC, 54, -9.350296865911e-01, 1.022648887967e-05, 4.0866e+01, 6.5967e-01, - 1DIAGNOSTIC, 55, -9.350910365505e-01, 9.578337023055e-06, 4.1512e+01, 6.4591e-01, - 1DIAGNOSTIC, 56, -9.351477028349e-01, 8.921314023174e-06, 4.2158e+01, 6.4667e-01, - 1DIAGNOSTIC, 57, -9.352040292174e-01, 8.327472192371e-06, 4.2818e+01, 6.6009e-01, - 1DIAGNOSTIC, 58, -9.352473975327e-01, 7.715979616300e-06, 4.3456e+01, 6.3778e-01, - 1DIAGNOSTIC, 59, -9.352861525636e-01, 7.052455902802e-06, 4.4100e+01, 6.4374e-01, - 1DIAGNOSTIC, 60, -9.353225066808e-01, 6.398350035790e-06, 4.4741e+01, 6.4146e-01, - 1DIAGNOSTIC, 61, -9.353545857003e-01, 5.763429971755e-06, 4.5417e+01, 6.7514e-01, - 1DIAGNOSTIC, 62, -9.353908966992e-01, 5.194748483484e-06, 4.6083e+01, 6.6674e-01, - 1DIAGNOSTIC, 63, -9.354126345033e-01, 4.647016162845e-06, 4.6738e+01, 6.5459e-01, - 1DIAGNOSTIC, 64, -9.354394959086e-01, 4.168794361100e-06, 4.7415e+01, 6.7704e-01, - 1DIAGNOSTIC, 65, -9.354566092232e-01, 3.716649909540e-06, 4.8092e+01, 6.7680e-01, - 1DIAGNOSTIC, 66, -9.354688132027e-01, 3.282002806412e-06, 4.8766e+01, 6.7431e-01, - 1DIAGNOSTIC, 67, -9.354796829115e-01, 2.894582420882e-06, 4.9432e+01, 6.6576e-01, - 1DIAGNOSTIC, 68, -9.354884013499e-01, 2.517194410231e-06, 5.0096e+01, 6.6431e-01, - 1DIAGNOSTIC, 69, -9.354926719716e-01, 2.141732108362e-06, 5.0744e+01, 6.4771e-01, - 1DIAGNOSTIC, 70, -9.354900964458e-01, 1.761152844735e-06, 5.1393e+01, 6.4876e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.850159950524e-01, 1.797693134862e+308, 5.7020e+01, 5.6274e+00, - 1DIAGNOSTIC, 2, -8.883099328317e-01, 1.797693134862e+308, 6.2344e+01, 5.3236e+00, - 1DIAGNOSTIC, 3, -8.911263829827e-01, 1.797693134862e+308, 6.7688e+01, 5.3448e+00, - 1DIAGNOSTIC, 4, -8.936734255909e-01, 1.797693134862e+308, 7.3026e+01, 5.3375e+00, - 1DIAGNOSTIC, 5, -8.959921546739e-01, 1.797693134862e+308, 7.8394e+01, 5.3678e+00, - 1DIAGNOSTIC, 6, -8.981611728776e-01, 1.797693134862e+308, 8.3766e+01, 5.3724e+00, - 1DIAGNOSTIC, 7, -9.002648278795e-01, 1.797693134862e+308, 8.9117e+01, 5.3507e+00, - 1DIAGNOSTIC, 8, -9.022205051473e-01, 1.797693134862e+308, 9.4435e+01, 5.3187e+00, - 1DIAGNOSTIC, 9, -9.038628677598e-01, 1.797693134862e+308, 9.9813e+01, 5.3772e+00, - 1DIAGNOSTIC, 10, -9.052524027914e-01, 1.431492665278e-03, 1.0517e+02, 5.3598e+00, - 1DIAGNOSTIC, 11, -9.064497144361e-01, 1.180291123747e-03, 1.1056e+02, 5.3840e+00, - 1DIAGNOSTIC, 12, -9.073522689877e-01, 9.750345845956e-04, 1.1592e+02, 5.3624e+00, - 1DIAGNOSTIC, 13, -9.081468684371e-01, 8.005959432268e-04, 1.2131e+02, 5.3943e+00, - 1DIAGNOSTIC, 14, -9.088541000008e-01, 6.514053634632e-04, 1.2665e+02, 5.3392e+00, - 1DIAGNOSTIC, 15, -9.094862411644e-01, 5.244230075061e-04, 1.3204e+02, 5.3831e+00, - 1DIAGNOSTIC, 16, -9.100535855866e-01, 4.188431260966e-04, 1.3742e+02, 5.3825e+00, - 1DIAGNOSTIC, 17, -9.105642892454e-01, 3.353072380496e-04, 1.4280e+02, 5.3839e+00, - 1DIAGNOSTIC, 18, -9.110317325222e-01, 2.722817550809e-04, 1.4815e+02, 5.3450e+00, - 1DIAGNOSTIC, 19, -9.114563916947e-01, 2.247253821117e-04, 1.5353e+02, 5.3808e+00, - 1DIAGNOSTIC, 20, -9.118441704304e-01, 1.888416457142e-04, 1.5888e+02, 5.3540e+00, - 1DIAGNOSTIC, 21, -9.122052541616e-01, 1.620621111788e-04, 1.6423e+02, 5.3482e+00, - 1DIAGNOSTIC, 22, -9.125390617063e-01, 1.402100803381e-04, 1.6957e+02, 5.3372e+00, - 1DIAGNOSTIC, 23, -9.128533969828e-01, 1.222653318416e-04, 1.7498e+02, 5.4168e+00, - 1DIAGNOSTIC, 24, -9.131459791548e-01, 1.074287253878e-04, 1.8036e+02, 5.3805e+00, - 1DIAGNOSTIC, 25, -9.134153814125e-01, 9.501629966358e-05, 1.8574e+02, 5.3738e+00, - 1DIAGNOSTIC, 26, -9.136718456027e-01, 8.458113470630e-05, 1.9109e+02, 5.3514e+00, - 1DIAGNOSTIC, 27, -9.139151070805e-01, 7.573114556266e-05, 1.9648e+02, 5.3955e+00, - 1DIAGNOSTIC, 28, -9.141458335443e-01, 6.821439569685e-05, 2.0184e+02, 5.3538e+00, - 1DIAGNOSTIC, 29, -9.143626406875e-01, 6.173948992403e-05, 2.0720e+02, 5.3575e+00, - 1DIAGNOSTIC, 30, -9.145647612410e-01, 5.605733570181e-05, 2.1256e+02, 5.3672e+00, - 1DIAGNOSTIC, 31, -9.147602552425e-01, 5.110104234302e-05, 2.1798e+02, 5.4127e+00, - 1DIAGNOSTIC, 32, -9.149429223232e-01, 4.670633794072e-05, 2.2331e+02, 5.3309e+00, - 1DIAGNOSTIC, 33, -9.151184995659e-01, 4.283836135843e-05, 2.2867e+02, 5.3638e+00, - 1DIAGNOSTIC, 34, -9.152862298043e-01, 3.941456280738e-05, 2.3403e+02, 5.3616e+00, - 1DIAGNOSTIC, 35, -9.154464898093e-01, 3.632931232364e-05, 2.3945e+02, 5.4202e+00, - 1DIAGNOSTIC, 36, -9.156002164577e-01, 3.357217935857e-05, 2.4483e+02, 5.3746e+00, - 1DIAGNOSTIC, 37, -9.157492312066e-01, 3.113197659681e-05, 2.5022e+02, 5.3929e+00, - 1DIAGNOSTIC, 38, -9.158924276885e-01, 2.897966637700e-05, 2.5559e+02, 5.3665e+00, - 1DIAGNOSTIC, 39, -9.160271501413e-01, 2.704231034224e-05, 2.6098e+02, 5.3918e+00, - 1DIAGNOSTIC, 40, -9.161576915529e-01, 2.527098800014e-05, 2.6637e+02, 5.3899e+00, - 1DIAGNOSTIC, 41, -9.162877568914e-01, 2.370506393744e-05, 2.7175e+02, 5.3834e+00, - 1DIAGNOSTIC, 42, -9.164117862579e-01, 2.227908670763e-05, 2.7713e+02, 5.3814e+00, - 1DIAGNOSTIC, 43, -9.165298157103e-01, 2.097195638109e-05, 2.8253e+02, 5.3932e+00, - 1DIAGNOSTIC, 44, -9.166467784820e-01, 1.978957716629e-05, 2.8788e+02, 5.3579e+00, - 1DIAGNOSTIC, 45, -9.167565357258e-01, 1.868881299596e-05, 2.9329e+02, 5.4013e+00, - 1DIAGNOSTIC, 46, -9.168627046338e-01, 1.765895301902e-05, 2.9866e+02, 5.3758e+00, - 1DIAGNOSTIC, 47, -9.169626119481e-01, 1.668271785080e-05, 3.0406e+02, 5.4031e+00, - 1DIAGNOSTIC, 48, -9.170602501164e-01, 1.576350868658e-05, 3.0941e+02, 5.3449e+00, - 1DIAGNOSTIC, 49, -9.171557132723e-01, 1.488456321856e-05, 3.1480e+02, 5.3940e+00, - 1DIAGNOSTIC, 50, -9.172473392347e-01, 1.404603646379e-05, 3.2015e+02, 5.3503e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -8.839796962106e-01, 1.797693134862e+308, 3.6410e+02, 4.3946e+01, - 1DIAGNOSTIC, 2, -8.860803177951e-01, 1.797693134862e+308, 4.0741e+02, 4.3314e+01, - 1DIAGNOSTIC, 3, -8.882078049711e-01, 1.797693134862e+308, 4.5090e+02, 4.3483e+01, - 1DIAGNOSTIC, 4, -8.901104564935e-01, 1.797693134862e+308, 4.9408e+02, 4.3187e+01, - 1DIAGNOSTIC, 5, -8.917203665914e-01, 1.797693134862e+308, 5.3736e+02, 4.3273e+01, - 1DIAGNOSTIC, 6, -8.931217372980e-01, 1.797693134862e+308, 5.8069e+02, 4.3330e+01, - 1DIAGNOSTIC, 7, -8.943942767323e-01, 1.797693134862e+308, 6.2394e+02, 4.3251e+01, - 1DIAGNOSTIC, 8, -8.956013566430e-01, 1.797693134862e+308, 6.6722e+02, 4.3278e+01, - 1DIAGNOSTIC, 9, -8.966755831756e-01, 1.797693134862e+308, 7.1061e+02, 4.3393e+01, - 1DIAGNOSTIC, 10, -8.976035227892e-01, 9.689522791516e-04, 7.5398e+02, 4.3368e+01, - 1DIAGNOSTIC, 11, -8.982964157202e-01, 7.862780257659e-04, 7.9722e+02, 4.3242e+01, - 1DIAGNOSTIC, 12, -8.989078177999e-01, 6.350310173217e-04, 8.4055e+02, 4.3331e+01, - 1DIAGNOSTIC, 13, -8.994348715078e-01, 5.141999122937e-04, 8.8404e+02, 4.3493e+01, - 1DIAGNOSTIC, 14, -8.999089663449e-01, 4.175395656783e-04, 9.2756e+02, 4.3521e+01, - 1DIAGNOSTIC, 15, -9.002169263808e-01, 3.360593027103e-04, 9.7072e+02, 4.3160e+01, - 1DIAGNOSTIC, 16, -9.004473767903e-01, 2.662877278863e-04, 1.0144e+03, 4.3671e+01, - 1DIAGNOSTIC, 17, -9.007167688206e-01, 2.089416697860e-04, 1.0578e+03, 4.3368e+01, - 1DIAGNOSTIC, 18, -9.008228954972e-01, 1.616676208871e-04, 1.1012e+03, 4.3463e+01, - 1DIAGNOSTIC, 19, -9.009740869347e-01, 1.247937646952e-04, 1.1445e+03, 4.3226e+01, - 1DIAGNOSTIC, 20, -9.010014350070e-01, 9.517880346575e-05, 1.1879e+03, 4.3435e+01, - Elapsed time (stage 2): 1188 - - -Total elapsed time: 1238 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:16 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:16 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:19 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:23 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:26 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4897 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:26 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:30 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:30 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4941 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:30 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/anat/sub-PNC009_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:33 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:33 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4987 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:33 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 4996 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:34 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:54 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:56 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:56 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:57 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:43:58 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:01 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:01 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:02 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:03 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/surf/sub-PNC009_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC009_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC009 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:05 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:14 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:25 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03/sub-PNC009_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC009 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:25 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC009 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:26 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC009_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC009 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:26 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5885 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:28 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:28 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc/sub-PNC009_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/xfm/sub-PNC009_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5970 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:30 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:30 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC009_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC009_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 68.683 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/logs/proc_func_19-03-2024-9543.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:38 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC009 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC009/ses-03/QC/sub-PNC009_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/478_micapipe_proc-func_sub-PNC009_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC009* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 68.717 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC009_ses-03 -========================reprocessing without filter=================== -sub-PNC010_ses-01 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC010 -ses 01 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC010 Session: ses-01 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC010 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC010 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:42 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:44:42 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-1_bold.nii.gz is 37.500004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:46:44 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:48:47 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 07:49:01 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.36 (mm) at sub-brick 2 -++ Max delta displ in automask = 0.14 (mm) at sub-brick 125 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:01:19 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:01:36 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-2_bold.nii.gz is 37.500004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:03:40 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:05:47 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-01/func/sub-PNC010_ses-01_task-rest_echo-3_bold.nii.gz is 37.500004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:07:57 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.831 -2.214 2.501 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.1 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.994 -4.142 4.385 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 70.3 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:12:34 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.9000000953674316 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:13:01 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x558013f0f6f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [112.102, 61.5536, -108.798] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558013d86730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558013f26320 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x558013f12fa0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [79.8093, 126.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558013f18e10) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558014723230 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5580147215c0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [112.102, 61.5536, -108.798] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558013f153f0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x55801524d450 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x55801471fda0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [79.8093, 126.5, -124.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558013f1c360) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558015a47780 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.582870016122e-01, 1.797693134862e+308, 4.3433e-02, 4.3432e-02, - 2DIAGNOSTIC, 2, -7.601562486148e-01, 1.797693134862e+308, 4.4634e-02, 1.2012e-03, - 2DIAGNOSTIC, 3, -7.618116365177e-01, 1.797693134862e+308, 4.5854e-02, 1.2200e-03, - 2DIAGNOSTIC, 4, -7.632380158158e-01, 1.797693134862e+308, 4.7130e-02, 1.2760e-03, - 2DIAGNOSTIC, 5, -7.650535728516e-01, 1.797693134862e+308, 4.8396e-02, 1.2660e-03, - 2DIAGNOSTIC, 6, -7.696607622045e-01, 1.797693134862e+308, 4.9932e-02, 1.5361e-03, - 2DIAGNOSTIC, 7, -7.849772577833e-01, 1.797693134862e+308, 5.1922e-02, 1.9898e-03, - 2DIAGNOSTIC, 8, -7.866184143238e-01, 1.797693134862e+308, 5.3419e-02, 1.4970e-03, - 2DIAGNOSTIC, 9, -7.878600656244e-01, 1.797693134862e+308, 5.4687e-02, 1.2681e-03, - 2DIAGNOSTIC, 10, -7.958171339659e-01, 3.312891924360e-03, 5.6433e-02, 1.7459e-03, - 2DIAGNOSTIC, 11, -7.975718548804e-01, 3.234707568492e-03, 5.7912e-02, 1.4791e-03, - 2DIAGNOSTIC, 12, -7.982827251233e-01, 2.952587862637e-03, 5.9327e-02, 1.4150e-03, - 2DIAGNOSTIC, 13, -7.993816226136e-01, 2.528874272800e-03, 6.0749e-02, 1.4219e-03, - 2DIAGNOSTIC, 14, -8.022884323744e-01, 2.055505252868e-03, 6.2648e-02, 1.8990e-03, - 2DIAGNOSTIC, 15, -8.043417618498e-01, 1.550198233093e-03, 6.4769e-02, 2.1210e-03, - 2DIAGNOSTIC, 16, -8.045356080894e-01, 1.066216364130e-03, 6.6211e-02, 1.4420e-03, - 2DIAGNOSTIC, 17, -8.069227821012e-01, 9.226771762164e-04, 6.7672e-02, 1.4610e-03, - 2DIAGNOSTIC, 18, -8.082961557707e-01, 7.715203644467e-04, 6.9596e-02, 1.9240e-03, - 2DIAGNOSTIC, 19, -8.088342455040e-01, 5.942450330692e-04, 7.1306e-02, 1.7099e-03, - 2DIAGNOSTIC, 20, -8.157029669471e-01, 6.464834096287e-04, 7.2765e-02, 1.4591e-03, - 2DIAGNOSTIC, 21, -8.221273281403e-01, 7.708599534085e-04, 7.4451e-02, 1.6859e-03, - 2DIAGNOSTIC, 22, -8.265405496458e-01, 8.935001456052e-04, 7.6152e-02, 1.7011e-03, - 2DIAGNOSTIC, 23, -8.318639762738e-01, 1.021009431901e-03, 7.8286e-02, 2.1338e-03, - 2DIAGNOSTIC, 24, -8.337593835020e-01, 1.112623114091e-03, 7.9961e-02, 1.6749e-03, - 2DIAGNOSTIC, 25, -8.383376207204e-01, 1.186518657835e-03, 8.1826e-02, 1.8649e-03, - 2DIAGNOSTIC, 26, -8.436294264325e-01, 1.215002563138e-03, 8.3725e-02, 1.8990e-03, - 2DIAGNOSTIC, 27, -8.457596794606e-01, 1.185066377023e-03, 8.6152e-02, 2.4271e-03, - 2DIAGNOSTIC, 28, -8.456191132890e-01, 1.063269958457e-03, 8.8243e-02, 2.0909e-03, - 2DIAGNOSTIC, 29, -8.461401669065e-01, 8.630725491161e-04, 8.9972e-02, 1.7290e-03, - 2DIAGNOSTIC, 30, -8.477616979865e-01, 6.938396640786e-04, 9.1642e-02, 1.6699e-03, - 2DIAGNOSTIC, 31, -8.495016379046e-01, 5.612198792388e-04, 9.3316e-02, 1.6742e-03, - 2DIAGNOSTIC, 32, -8.497685313131e-01, 4.343011150944e-04, 9.5008e-02, 1.6918e-03, - 2DIAGNOSTIC, 33, -8.500011447365e-01, 3.348127549396e-04, 9.6481e-02, 1.4732e-03, - 2DIAGNOSTIC, 34, -8.512590420499e-01, 2.420944466171e-04, 9.8419e-02, 1.9379e-03, - 2DIAGNOSTIC, 35, -8.518352481746e-01, 1.816779663524e-04, 9.9873e-02, 1.4541e-03, - 2DIAGNOSTIC, 36, -8.519582323683e-01, 1.593431669234e-04, 1.0133e-01, 1.4548e-03, - 2DIAGNOSTIC, 37, -8.544309089411e-01, 1.670967676425e-04, 1.0328e-01, 1.9481e-03, - 2DIAGNOSTIC, 38, -8.545061200581e-01, 1.576793916106e-04, 1.0483e-01, 1.5500e-03, - 2DIAGNOSTIC, 39, -8.546468495269e-01, 1.396092700899e-04, 1.0652e-01, 1.6942e-03, - 2DIAGNOSTIC, 40, -8.549835977223e-01, 1.261147216912e-04, 1.0845e-01, 1.9310e-03, - 2DIAGNOSTIC, 41, -8.560682023742e-01, 1.252578122124e-04, 1.1393e-01, 5.4801e-03, - 2DIAGNOSTIC, 42, -8.560681956862e-01, 1.143723243414e-04, 1.1540e-01, 1.4691e-03, - 2DIAGNOSTIC, 43, -8.560682163613e-01, 9.489232537824e-05, 1.1682e-01, 1.4212e-03, - 2DIAGNOSTIC, 44, -8.560682513160e-01, 7.755643834353e-05, 1.1825e-01, 1.4260e-03, - 2DIAGNOSTIC, 45, -8.560683104027e-01, 5.824823306128e-05, 1.1970e-01, 1.4489e-03, - 2DIAGNOSTIC, 46, -8.560684102571e-01, 3.458504941884e-05, 1.2112e-01, 1.4241e-03, - 2DIAGNOSTIC, 47, -8.560685789369e-01, 2.690863220121e-05, 1.2261e-01, 1.4849e-03, - 2DIAGNOSTIC, 48, -8.560688636801e-01, 1.772707555022e-05, 1.2404e-01, 1.4310e-03, - 2DIAGNOSTIC, 49, -8.560693437734e-01, 8.321169541081e-06, 1.2548e-01, 1.4470e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.512641071953e-01, 1.797693134862e+308, 1.7316e-01, 4.7677e-02, - 2DIAGNOSTIC, 2, -4.519533612737e-01, 1.797693134862e+308, 1.7607e-01, 2.9130e-03, - 2DIAGNOSTIC, 3, -4.541978103258e-01, 1.797693134862e+308, 1.7895e-01, 2.8799e-03, - 2DIAGNOSTIC, 4, -4.583672506140e-01, 1.797693134862e+308, 1.8151e-01, 2.5601e-03, - 2DIAGNOSTIC, 5, -4.680729685226e-01, 1.797693134862e+308, 1.8369e-01, 2.1808e-03, - 2DIAGNOSTIC, 6, -4.734697089434e-01, 1.797693134862e+308, 1.8579e-01, 2.0921e-03, - 2DIAGNOSTIC, 7, -4.836876889066e-01, 1.797693134862e+308, 1.8786e-01, 2.0702e-03, - 2DIAGNOSTIC, 8, -4.932658878974e-01, 1.797693134862e+308, 1.8997e-01, 2.1112e-03, - 2DIAGNOSTIC, 9, -5.036160065513e-01, 1.797693134862e+308, 1.9294e-01, 2.9750e-03, - 2DIAGNOSTIC, 10, -5.051336123128e-01, 8.340942542189e-03, 1.9572e-01, 2.7750e-03, - 2DIAGNOSTIC, 11, -5.077298966798e-01, 7.878184223338e-03, 1.9854e-01, 2.8269e-03, - 2DIAGNOSTIC, 12, -5.141514870250e-01, 7.139015153703e-03, 2.0175e-01, 3.2010e-03, - 2DIAGNOSTIC, 13, -5.186112147554e-01, 6.166365399231e-03, 2.0436e-01, 2.6121e-03, - 2DIAGNOSTIC, 14, -5.287270036257e-01, 5.362653350555e-03, 2.0650e-01, 2.1410e-03, - 2DIAGNOSTIC, 15, -5.315767242425e-01, 4.669322331279e-03, 2.0920e-01, 2.7039e-03, - 2DIAGNOSTIC, 16, -5.395442604820e-01, 4.123109769397e-03, 2.1241e-01, 3.2070e-03, - 2DIAGNOSTIC, 17, -5.407473302850e-01, 3.644715235640e-03, 2.1506e-01, 2.6469e-03, - 2DIAGNOSTIC, 18, -5.409743558561e-01, 3.191562921197e-03, 2.1743e-01, 2.3751e-03, - 2DIAGNOSTIC, 19, -5.412849023505e-01, 2.815349058335e-03, 2.1983e-01, 2.3959e-03, - 2DIAGNOSTIC, 20, -5.413739939141e-01, 2.263953508804e-03, 2.2222e-01, 2.3890e-03, - 2DIAGNOSTIC, 21, -5.414771012757e-01, 1.628449930894e-03, 2.2432e-01, 2.0990e-03, - 2DIAGNOSTIC, 22, -5.420368722290e-01, 1.081408609083e-03, 2.2639e-01, 2.0750e-03, - 2DIAGNOSTIC, 23, -5.434864443684e-01, 6.246236199684e-04, 2.2845e-01, 2.0552e-03, - 2DIAGNOSTIC, 24, -5.447105476522e-01, 4.138426264054e-04, 2.3134e-01, 2.8989e-03, - 2DIAGNOSTIC, 25, -5.450173455608e-01, 2.477709354214e-04, 2.3369e-01, 2.3420e-03, - 2DIAGNOSTIC, 26, -5.458391022464e-01, 2.598261887881e-04, 2.3602e-01, 2.3360e-03, - 2DIAGNOSTIC, 27, -5.482330144705e-01, 3.200247970140e-04, 2.3811e-01, 2.0909e-03, - 2DIAGNOSTIC, 28, -5.560252017440e-01, 5.017764445585e-04, 2.4018e-01, 2.0709e-03, - 2DIAGNOSTIC, 29, -5.593465274126e-01, 6.878797954444e-04, 2.4251e-01, 2.3210e-03, - 2DIAGNOSTIC, 30, -5.604859059466e-01, 8.192048277001e-04, 2.4454e-01, 2.0351e-03, - 2DIAGNOSTIC, 31, -5.684678148923e-01, 1.008740267861e-03, 2.4660e-01, 2.0618e-03, - 2DIAGNOSTIC, 32, -5.878111479160e-01, 1.423440848625e-03, 2.4900e-01, 2.3971e-03, - 2DIAGNOSTIC, 33, -6.064743940200e-01, 1.994172128041e-03, 2.5137e-01, 2.3720e-03, - 2DIAGNOSTIC, 34, -6.150502514918e-01, 2.488763621698e-03, 2.5838e-01, 7.0128e-03, - 2DIAGNOSTIC, 35, -6.150488035076e-01, 2.725550416869e-03, 2.6041e-01, 2.0301e-03, - 2DIAGNOSTIC, 36, -6.150527462802e-01, 2.705530562135e-03, 2.6247e-01, 2.0549e-03, - 2DIAGNOSTIC, 37, -6.150594057958e-01, 2.458483005192e-03, 2.6451e-01, 2.0421e-03, - 2DIAGNOSTIC, 38, -6.150706396685e-01, 2.096912175477e-03, 2.6654e-01, 2.0311e-03, - 2DIAGNOSTIC, 39, -6.150895578458e-01, 1.604980329850e-03, 2.6857e-01, 2.0311e-03, - 2DIAGNOSTIC, 40, -6.151213071487e-01, 1.007668960372e-03, 2.7060e-01, 2.0299e-03, - 2DIAGNOSTIC, 41, -6.151743202598e-01, 4.480274182282e-04, 2.7263e-01, 2.0239e-03, - 2DIAGNOSTIC, 42, -6.152617935624e-01, 1.124560888818e-04, 2.7467e-01, 2.0418e-03, - 2DIAGNOSTIC, 43, -6.154053762486e-01, 8.816685765523e-06, 2.7697e-01, 2.3050e-03, - 2DIAGNOSTIC, 44, -6.154941588041e-01, 1.202322572603e-05, 2.7900e-01, 2.0220e-03, - 2DIAGNOSTIC, 45, -6.155621198153e-01, 1.476612287109e-05, 2.8102e-01, 2.0220e-03, - 2DIAGNOSTIC, 46, -6.157872340806e-01, 1.861961297622e-05, 2.8334e-01, 2.3229e-03, - 2DIAGNOSTIC, 47, -6.159864773575e-01, 2.277866688778e-05, 2.8540e-01, 2.0590e-03, - 2DIAGNOSTIC, 48, -6.163998607482e-01, 2.914346035043e-05, 2.8746e-01, 2.0571e-03, - 2DIAGNOSTIC, 49, -6.168293975882e-01, 3.712645043814e-05, 2.8951e-01, 2.0568e-03, - 2DIAGNOSTIC, 50, -6.172785313944e-01, 4.614892732122e-05, 2.9155e-01, 2.0311e-03, - 2DIAGNOSTIC, 51, -6.178238862435e-01, 5.637113222675e-05, 2.9358e-01, 2.0370e-03, - 2DIAGNOSTIC, 52, -6.184893311728e-01, 6.809845666435e-05, 2.9563e-01, 2.0430e-03, - 2DIAGNOSTIC, 53, -6.190213795628e-01, 7.924055444190e-05, 2.9767e-01, 2.0490e-03, - 2DIAGNOSTIC, 54, -6.196225737421e-01, 8.883637071156e-05, 2.9973e-01, 2.0561e-03, - 2DIAGNOSTIC, 55, -6.212769398203e-01, 1.053735338809e-04, 3.0232e-01, 2.5852e-03, - 2DIAGNOSTIC, 56, -6.219390380990e-01, 1.188752109863e-04, 3.0491e-01, 2.5928e-03, - 2DIAGNOSTIC, 57, -6.219674057306e-01, 1.224923964127e-04, 3.0715e-01, 2.2430e-03, - 2DIAGNOSTIC, 58, -6.256889038635e-01, 1.503649794103e-04, 3.0939e-01, 2.2380e-03, - 2DIAGNOSTIC, 59, -6.293043362157e-01, 1.963334954805e-04, 3.1191e-01, 2.5229e-03, - 2DIAGNOSTIC, 60, -6.328339926071e-01, 2.543030402878e-04, 3.1501e-01, 3.0968e-03, - 2DIAGNOSTIC, 61, -6.340714188914e-01, 3.002729379157e-04, 3.1771e-01, 2.6999e-03, - 2DIAGNOSTIC, 62, -6.351892310480e-01, 3.307142567774e-04, 3.1983e-01, 2.1250e-03, - 2DIAGNOSTIC, 63, -6.359939436064e-01, 3.387549710265e-04, 3.2197e-01, 2.1389e-03, - 2DIAGNOSTIC, 64, -6.360634618225e-01, 3.183212348909e-04, 3.2439e-01, 2.4199e-03, - 2DIAGNOSTIC, 65, -6.364228014975e-01, 2.833568744419e-04, 3.2744e-01, 3.0470e-03, - 2DIAGNOSTIC, 66, -6.368227381800e-01, 2.308677990388e-04, 3.2958e-01, 2.1448e-03, - 2DIAGNOSTIC, 67, -6.369376509772e-01, 1.587383189062e-04, 3.3207e-01, 2.4819e-03, - 2DIAGNOSTIC, 68, -6.370713476134e-01, 1.013995110629e-04, 3.3456e-01, 2.4960e-03, - 2DIAGNOSTIC, 69, -6.371281916861e-01, 6.197241958995e-05, 3.3675e-01, 2.1889e-03, - 2DIAGNOSTIC, 70, -6.373088030071e-01, 4.390050903960e-05, 3.3926e-01, 2.5129e-03, - 2DIAGNOSTIC, 71, -6.373216903951e-01, 3.065851744381e-05, 3.4171e-01, 2.4481e-03, - 2DIAGNOSTIC, 72, -6.373280046514e-01, 2.247150255120e-05, 3.4387e-01, 2.1532e-03, - 2DIAGNOSTIC, 73, -6.372537076669e-01, 1.738486697431e-05, 3.4599e-01, 2.1250e-03, - 2DIAGNOSTIC, 74, -6.372742396004e-01, 1.139472580667e-05, 3.4900e-01, 3.0110e-03, - 2DIAGNOSTIC, 75, -6.372856067043e-01, 6.864876705632e-06, 3.5141e-01, 2.4099e-03, - 2DIAGNOSTIC, 76, -6.372874216861e-01, 4.414400545116e-06, 3.5381e-01, 2.4028e-03, - 2DIAGNOSTIC, 77, -6.372122683102e-01, 1.906557238151e-06, 3.5596e-01, 2.1489e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.792343005537e-01, 1.797693134862e+308, 4.2393e-01, 6.7971e-02, - 2DIAGNOSTIC, 2, -4.798996912069e-01, 1.797693134862e+308, 4.3409e-01, 1.0158e-02, - 2DIAGNOSTIC, 3, -4.811123565486e-01, 1.797693134862e+308, 4.4401e-01, 9.9130e-03, - 2DIAGNOSTIC, 4, -4.819456216524e-01, 1.797693134862e+308, 4.5390e-01, 9.8922e-03, - 2DIAGNOSTIC, 5, -4.826905768399e-01, 1.797693134862e+308, 4.6388e-01, 9.9828e-03, - 2DIAGNOSTIC, 6, -4.838310536085e-01, 1.797693134862e+308, 4.7513e-01, 1.1252e-02, - 2DIAGNOSTIC, 7, -4.838721347299e-01, 1.797693134862e+308, 4.8641e-01, 1.1276e-02, - 2DIAGNOSTIC, 8, -4.843635465768e-01, 1.797693134862e+308, 4.9630e-01, 9.8898e-03, - 2DIAGNOSTIC, 9, -4.846882473800e-01, 1.797693134862e+308, 5.0794e-01, 1.1641e-02, - 2DIAGNOSTIC, 10, -4.848043824099e-01, 7.759994777131e-04, 5.2253e-01, 1.4587e-02, - 2DIAGNOSTIC, 11, -4.848372932583e-01, 5.848980983668e-04, 5.3361e-01, 1.1080e-02, - 2DIAGNOSTIC, 12, -4.849124344458e-01, 4.092376122239e-04, 5.5020e-01, 1.6591e-02, - 2DIAGNOSTIC, 13, -4.849224412430e-01, 2.790600451194e-04, 5.6171e-01, 1.1508e-02, - 2DIAGNOSTIC, 14, -4.849210623133e-01, 1.767997900291e-04, 5.7326e-01, 1.1554e-02, - 2DIAGNOSTIC, 15, -4.848903352370e-01, 9.925997991628e-05, 5.8501e-01, 1.1750e-02, - 2DIAGNOSTIC, 16, -4.848773049277e-01, 6.431707365215e-05, 5.9565e-01, 1.0645e-02, - 2DIAGNOSTIC, 17, -4.848817779881e-01, 2.899804069550e-05, 6.0623e-01, 1.0579e-02, - 2DIAGNOSTIC, 18, -4.848872730906e-01, 1.104974146465e-05, 6.1669e-01, 1.0460e-02, - 2DIAGNOSTIC, 19, -4.848942814832e-01, 4.334174397921e-06, 6.2834e-01, 1.1648e-02, - 2DIAGNOSTIC, 20, -4.848866074153e-01, 1.249674463535e-06, 6.3997e-01, 1.1633e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.030294234360e-01, 1.797693134862e+308, 8.4503e-01, 2.0505e-01, - Elapsed time (stage 0): 8.7175e-01 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.587570284423e-01, 1.797693134862e+308, 3.4622e-02, 3.4621e-02, - 2DIAGNOSTIC, 2, -9.613215010804e-01, 1.797693134862e+308, 3.5883e-02, 1.2610e-03, - 2DIAGNOSTIC, 3, -9.706241361881e-01, 1.797693134862e+308, 3.7209e-02, 1.3261e-03, - 2DIAGNOSTIC, 4, -9.866023745763e-01, 1.797693134862e+308, 3.8716e-02, 1.5070e-03, - 2DIAGNOSTIC, 5, -9.921073002580e-01, 1.797693134862e+308, 4.0147e-02, 1.4310e-03, - 2DIAGNOSTIC, 6, -9.937008924926e-01, 1.797693134862e+308, 4.1360e-02, 1.2131e-03, - 2DIAGNOSTIC, 7, -9.975815743306e-01, 1.797693134862e+308, 4.2638e-02, 1.2779e-03, - 2DIAGNOSTIC, 8, -1.006263901509e+00, 1.797693134862e+308, 4.4089e-02, 1.4510e-03, - 2DIAGNOSTIC, 9, -1.023257939673e+00, 1.797693134862e+308, 4.5543e-02, 1.4541e-03, - 2DIAGNOSTIC, 10, -1.034865002666e+00, 4.602835079347e-03, 4.7700e-02, 2.1570e-03, - 2DIAGNOSTIC, 11, -1.042524666659e+00, 4.416253575631e-03, 4.9373e-02, 1.6730e-03, - 2DIAGNOSTIC, 12, -1.050353813782e+00, 4.113703973729e-03, 5.0841e-02, 1.4679e-03, - 2DIAGNOSTIC, 13, -1.054979913612e+00, 3.779975001214e-03, 5.2552e-02, 1.7109e-03, - 2DIAGNOSTIC, 14, -1.061271098502e+00, 3.593504677825e-03, 5.4026e-02, 1.4741e-03, - 2DIAGNOSTIC, 15, -1.066226801647e+00, 3.298255333108e-03, 5.5774e-02, 1.7481e-03, - 2DIAGNOSTIC, 16, -1.070287716673e+00, 2.839882175092e-03, 5.7483e-02, 1.7090e-03, - 2DIAGNOSTIC, 17, -1.071602010072e+00, 2.262827406514e-03, 5.9008e-02, 1.5252e-03, - 2DIAGNOSTIC, 18, -1.084271202952e+00, 1.868878090437e-03, 6.1374e-02, 2.3661e-03, - 2DIAGNOSTIC, 19, -1.088443387347e+00, 1.646411911607e-03, 6.4090e-02, 2.7161e-03, - 2DIAGNOSTIC, 20, -1.089801002079e+00, 1.472195194541e-03, 6.5605e-02, 1.5142e-03, - 2DIAGNOSTIC, 21, -1.091123454903e+00, 1.297240381293e-03, 6.7333e-02, 1.7281e-03, - 2DIAGNOSTIC, 22, -1.091312833511e+00, 1.118193844920e-03, 6.8794e-02, 1.4610e-03, - 2DIAGNOSTIC, 23, -1.092494805045e+00, 9.173126681078e-04, 7.0243e-02, 1.4491e-03, - 2DIAGNOSTIC, 24, -1.096748327051e+00, 7.658884402235e-04, 7.1720e-02, 1.4770e-03, - 2DIAGNOSTIC, 25, -1.100519387056e+00, 6.501431151540e-04, 7.3223e-02, 1.5030e-03, - 2DIAGNOSTIC, 26, -1.108023006197e+00, 6.048751651438e-04, 7.4696e-02, 1.4729e-03, - 2DIAGNOSTIC, 27, -1.118530574692e+00, 6.208913659023e-04, 7.6405e-02, 1.7090e-03, - 2DIAGNOSTIC, 28, -1.119470986097e+00, 7.062462875322e-04, 7.8086e-02, 1.6811e-03, - 2DIAGNOSTIC, 29, -1.119701506385e+00, 7.609103243166e-04, 7.9800e-02, 1.7140e-03, - 2DIAGNOSTIC, 30, -1.120831741923e+00, 7.627899257494e-04, 8.1684e-02, 1.8840e-03, - 2DIAGNOSTIC, 31, -1.120966693053e+00, 7.042085157010e-04, 8.3348e-02, 1.6639e-03, - 2DIAGNOSTIC, 32, -1.120253729378e+00, 5.776450609900e-04, 8.5021e-02, 1.6730e-03, - 2DIAGNOSTIC, 33, -1.120432788610e+00, 4.158677551240e-04, 8.6463e-02, 1.4420e-03, - 2DIAGNOSTIC, 34, -1.119179101401e+00, 2.494218924637e-04, 8.7938e-02, 1.4751e-03, - 2DIAGNOSTIC, 35, -1.119469355018e+00, 9.986536260569e-05, 8.9595e-02, 1.6570e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.093462250981e-01, 1.797693134862e+308, 1.3393e-01, 4.4339e-02, - 2DIAGNOSTIC, 2, -7.104385495962e-01, 1.797693134862e+308, 1.3666e-01, 2.7261e-03, - 2DIAGNOSTIC, 3, -7.126511113612e-01, 1.797693134862e+308, 1.3934e-01, 2.6770e-03, - 2DIAGNOSTIC, 4, -7.163622210716e-01, 1.797693134862e+308, 1.4206e-01, 2.7189e-03, - 2DIAGNOSTIC, 5, -7.216578719497e-01, 1.797693134862e+308, 1.4449e-01, 2.4371e-03, - 2DIAGNOSTIC, 6, -7.278265138753e-01, 1.797693134862e+308, 1.4692e-01, 2.4278e-03, - 2DIAGNOSTIC, 7, -7.320573542242e-01, 1.797693134862e+308, 1.4942e-01, 2.4960e-03, - 2DIAGNOSTIC, 8, -7.370383958850e-01, 1.797693134862e+308, 1.5188e-01, 2.4681e-03, - 2DIAGNOSTIC, 9, -7.394362719538e-01, 1.797693134862e+308, 1.5552e-01, 3.6309e-03, - 2DIAGNOSTIC, 10, -7.423489008415e-01, 3.288816490020e-03, 1.5820e-01, 2.6822e-03, - 2DIAGNOSTIC, 11, -7.434782731081e-01, 2.956562483369e-03, 1.6115e-01, 2.9519e-03, - 2DIAGNOSTIC, 12, -7.442711400737e-01, 2.477521253449e-03, 1.6443e-01, 3.2809e-03, - 2DIAGNOSTIC, 13, -7.446165402590e-01, 1.926849934076e-03, 1.6706e-01, 2.6340e-03, - 2DIAGNOSTIC, 14, -7.449915118362e-01, 1.393675727174e-03, 1.6993e-01, 2.8632e-03, - 2DIAGNOSTIC, 15, -7.450962125489e-01, 9.433296263535e-04, 1.7270e-01, 2.7759e-03, - 2DIAGNOSTIC, 16, -7.451544281453e-01, 6.139308866665e-04, 1.7563e-01, 2.9249e-03, - 2DIAGNOSTIC, 17, -7.452108055893e-01, 3.636070052111e-04, 1.7854e-01, 2.9099e-03, - 2DIAGNOSTIC, 18, -7.449448163186e-01, 2.090869307734e-04, 1.8345e-01, 4.9071e-03, - 2DIAGNOSTIC, 19, -7.448877364473e-01, 9.842225873108e-05, 1.8592e-01, 2.4722e-03, - 2DIAGNOSTIC, 20, -7.448414977450e-01, 4.501463637757e-05, 1.8848e-01, 2.5630e-03, - 2DIAGNOSTIC, 21, -7.448822825438e-01, 1.392953079127e-05, 1.9121e-01, 2.7292e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.463808801743e-01, 1.797693134862e+308, 2.5443e-01, 6.3223e-02, - 2DIAGNOSTIC, 2, -5.466562751836e-01, 1.797693134862e+308, 2.6672e-01, 1.2286e-02, - 2DIAGNOSTIC, 3, -5.470986892292e-01, 1.797693134862e+308, 2.7905e-01, 1.2332e-02, - 2DIAGNOSTIC, 4, -5.478313832233e-01, 1.797693134862e+308, 2.9140e-01, 1.2349e-02, - 2DIAGNOSTIC, 5, -5.492609546173e-01, 1.797693134862e+308, 3.0455e-01, 1.3146e-02, - 2DIAGNOSTIC, 6, -5.506212930291e-01, 1.797693134862e+308, 3.1754e-01, 1.2992e-02, - 2DIAGNOSTIC, 7, -5.520884573523e-01, 1.797693134862e+308, 3.3219e-01, 1.4654e-02, - 2DIAGNOSTIC, 8, -5.534016218542e-01, 1.797693134862e+308, 3.5236e-01, 2.0168e-02, - 2DIAGNOSTIC, 9, -5.535621588265e-01, 1.797693134862e+308, 3.6577e-01, 1.3411e-02, - 2DIAGNOSTIC, 10, -5.541644954059e-01, 1.059940540102e-03, 3.7808e-01, 1.2308e-02, - 2DIAGNOSTIC, 11, -5.547569001463e-01, 9.637016250219e-04, 3.9023e-01, 1.2150e-02, - 2DIAGNOSTIC, 12, -5.550853098940e-01, 8.224766538505e-04, 4.0423e-01, 1.4004e-02, - 2DIAGNOSTIC, 13, -5.555668504477e-01, 6.656608346122e-04, 4.2088e-01, 1.6649e-02, - 2DIAGNOSTIC, 14, -5.556339545696e-01, 5.002426572738e-04, 4.3466e-01, 1.3776e-02, - 2DIAGNOSTIC, 15, -5.556681988321e-01, 3.617250431807e-04, 4.4875e-01, 1.4092e-02, - 2DIAGNOSTIC, 16, -5.556926165133e-01, 2.512791826925e-04, 4.6184e-01, 1.3090e-02, - 2DIAGNOSTIC, 17, -5.557293069685e-01, 1.754380139037e-04, 4.7434e-01, 1.2504e-02, - 2DIAGNOSTIC, 18, -5.558266659707e-01, 1.324262947790e-04, 4.8691e-01, 1.2564e-02, - 2DIAGNOSTIC, 19, -5.559500879922e-01, 8.928422355697e-05, 5.0040e-01, 1.3496e-02, - 2DIAGNOSTIC, 20, -5.560818069025e-01, 6.100831462076e-05, 5.1571e-01, 1.5309e-02, - 2DIAGNOSTIC, 21, -5.562262785447e-01, 4.784524667737e-05, 5.3098e-01, 1.5266e-02, - 2DIAGNOSTIC, 22, -5.563507279729e-01, 4.180898572295e-05, 5.4481e-01, 1.3831e-02, - 2DIAGNOSTIC, 23, -5.563625232525e-01, 4.347571429836e-05, 5.5723e-01, 1.2418e-02, - 2DIAGNOSTIC, 24, -5.563539750428e-01, 4.232199863606e-05, 5.7103e-01, 1.3803e-02, - 2DIAGNOSTIC, 25, -5.563775829434e-01, 3.861145034630e-05, 5.9942e-01, 2.8391e-02, - 2DIAGNOSTIC, 26, -5.563793999536e-01, 3.215857664005e-05, 6.1161e-01, 1.2191e-02, - 2DIAGNOSTIC, 27, -5.563802918559e-01, 2.395434463995e-05, 6.2364e-01, 1.2026e-02, - 2DIAGNOSTIC, 28, -5.563734018995e-01, 1.585219970942e-05, 6.4015e-01, 1.6507e-02, - 2DIAGNOSTIC, 29, -5.563739705914e-01, 9.120108326793e-06, 6.5346e-01, 1.3313e-02, - 2DIAGNOSTIC, 30, -5.563705894474e-01, 4.225501904265e-06, 6.6534e-01, 1.1880e-02, - 2DIAGNOSTIC, 31, -5.563677607300e-01, 1.631265967021e-06, 6.7891e-01, 1.3571e-02, - 2DIAGNOSTIC, 32, -5.563685991497e-01, 1.150808959148e-06, 6.9159e-01, 1.2677e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.603564022181e-01, 1.797693134862e+308, 8.8096e-01, 1.8937e-01, - Elapsed time (stage 1): 9.0307e-01 - - -Total elapsed time: 1.7754e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:13:04 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 29 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 60 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 79.31% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 79.31% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[15030 8363 37497 7518 1493 2416 1470 190 2327 4767 8170 4311 - 2935 2422 1145 1391 164 163 0 0 0 0 0 251 - 0 0 655 0 0] -[95293 32854 12146 15969 19427 10816 1332 5490 6632 10128 6039 5014 - 5803 785 498 1825 582 1018 896 0 1551 0 330 666 - 242 0 225 0 287] -[ 0 7659 325 0 5011 3877 10985 0 1476 174 0 373 - 1037 0 967 14174 0 376 162 8740 4194 988 7526 13980 - 9917 0 14930 7940 0] -[ 627 789 2631 0 0 2584 287 681 10611 4124 4572 744 - 653 1242 5436 742 370 3892 11156 231 11444 13989 529 77058 - 955 188 168 58877 434] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:21:13 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:21:20 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:02 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:02 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:02 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:12 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:25:15 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC010 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:26:16 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.9000000953674316 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:26:41 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:29:37 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:29:38 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:30:55 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:30:56 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55aaf34b3d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [80.2585, 126.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55aaf332a730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f36849b5010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55aaf34b7020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.551, 62.0027, -109.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55aaf34bd0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f36812f6010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55aaf34cd840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [80.2585, 126.949, -124.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55aaf34b9890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f367c622010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55aaf34d13e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.551, 62.0027, -109.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55aaf34c0130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f3678f63010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.471661188678e-01, 1.797693134862e+308, 2.4578e-01, 2.4578e-01, - 2DIAGNOSTIC, 2, -4.484098643762e-01, 1.797693134862e+308, 2.4725e-01, 1.4651e-03, - 2DIAGNOSTIC, 3, -4.494882624772e-01, 1.797693134862e+308, 2.4881e-01, 1.5600e-03, - 2DIAGNOSTIC, 4, -4.495403302583e-01, 1.797693134862e+308, 2.5008e-01, 1.2670e-03, - 2DIAGNOSTIC, 5, -4.498358752291e-01, 1.797693134862e+308, 2.5148e-01, 1.4069e-03, - 2DIAGNOSTIC, 6, -4.499450052422e-01, 1.797693134862e+308, 2.5275e-01, 1.2619e-03, - 2DIAGNOSTIC, 7, -4.497786616554e-01, 1.797693134862e+308, 2.5394e-01, 1.1981e-03, - 2DIAGNOSTIC, 8, -4.499750773173e-01, 1.797693134862e+308, 2.5538e-01, 1.4338e-03, - 2DIAGNOSTIC, 9, -4.501823651624e-01, 1.797693134862e+308, 2.5665e-01, 1.2701e-03, - 2DIAGNOSTIC, 10, -4.508189641098e-01, 3.618189627924e-04, 2.5811e-01, 1.4589e-03, - 2DIAGNOSTIC, 11, -4.519340525657e-01, 3.001919440458e-04, 2.5996e-01, 1.8561e-03, - 2DIAGNOSTIC, 12, -4.521907890723e-01, 2.988577030511e-04, 2.6181e-01, 1.8501e-03, - 2DIAGNOSTIC, 13, -4.520043056424e-01, 3.151458084509e-04, 2.6344e-01, 1.6260e-03, - 2DIAGNOSTIC, 14, -4.515546938053e-01, 2.832565303183e-04, 2.6486e-01, 1.4212e-03, - 2DIAGNOSTIC, 15, -4.520151563456e-01, 2.616572302914e-04, 2.6627e-01, 1.4091e-03, - 2DIAGNOSTIC, 16, -4.549259309228e-01, 3.366141858022e-04, 2.6767e-01, 1.4029e-03, - 2DIAGNOSTIC, 17, -4.617300607678e-01, 6.142878969303e-04, 2.6926e-01, 1.5831e-03, - 2DIAGNOSTIC, 18, -5.596648240842e-01, 4.178128108898e-03, 2.7089e-01, 1.6379e-03, - 2DIAGNOSTIC, 19, -5.781356273122e-01, 7.407807918146e-03, 2.7232e-01, 1.4269e-03, - 2DIAGNOSTIC, 20, -5.817464204217e-01, 9.706333757563e-03, 2.7402e-01, 1.7018e-03, - 2DIAGNOSTIC, 21, -5.849960700924e-01, 1.100985090729e-02, 2.7616e-01, 2.1372e-03, - 2DIAGNOSTIC, 22, -5.878521352109e-01, 1.122623833373e-02, 2.7866e-01, 2.4981e-03, - 2DIAGNOSTIC, 23, -5.882432203537e-01, 1.034219374022e-02, 2.8015e-01, 1.4949e-03, - 2DIAGNOSTIC, 24, -5.893467938112e-01, 8.589253465261e-03, 2.8158e-01, 1.4329e-03, - 2DIAGNOSTIC, 25, -5.909647400830e-01, 6.285049982823e-03, 2.8325e-01, 1.6620e-03, - 2DIAGNOSTIC, 26, -5.921495497294e-01, 3.720768365924e-03, 2.8491e-01, 1.6608e-03, - 2DIAGNOSTIC, 27, -5.922926303631e-01, 1.124994376751e-03, 2.8633e-01, 1.4191e-03, - 2DIAGNOSTIC, 28, -5.932061870392e-01, 6.245685112275e-04, 2.8779e-01, 1.4648e-03, - 2DIAGNOSTIC, 29, -5.936998845422e-01, 4.716337289671e-04, 2.8921e-01, 1.4169e-03, - 2DIAGNOSTIC, 30, -5.960763088091e-01, 3.958656442664e-04, 2.9091e-01, 1.6990e-03, - 2DIAGNOSTIC, 31, -6.003601336364e-01, 4.208275885076e-04, 2.9285e-01, 1.9410e-03, - 2DIAGNOSTIC, 32, -6.017392996830e-01, 4.761624502835e-04, 2.9471e-01, 1.8599e-03, - 2DIAGNOSTIC, 33, -6.006200896057e-01, 4.713769973756e-04, 2.9630e-01, 1.5869e-03, - 2DIAGNOSTIC, 34, -6.006515539996e-01, 4.417901590100e-04, 2.9772e-01, 1.4260e-03, - 2DIAGNOSTIC, 35, -6.010692806464e-01, 4.030051409981e-04, 2.9915e-01, 1.4269e-03, - 2DIAGNOSTIC, 36, -6.023308392611e-01, 3.638487872113e-04, 3.0061e-01, 1.4570e-03, - 2DIAGNOSTIC, 37, -6.030480641313e-01, 3.045493851124e-04, 3.0224e-01, 1.6329e-03, - 2DIAGNOSTIC, 38, -6.032655468592e-01, 2.373876632318e-04, 3.0366e-01, 1.4200e-03, - 2DIAGNOSTIC, 39, -6.038740339972e-01, 1.672262998375e-04, 3.0535e-01, 1.6918e-03, - 2DIAGNOSTIC, 40, -6.041371253298e-01, 1.185577085587e-04, 3.0782e-01, 2.4700e-03, - 2DIAGNOSTIC, 41, -6.041578209986e-01, 1.162093599808e-04, 3.0921e-01, 1.3931e-03, - 2DIAGNOSTIC, 42, -6.043260817839e-01, 1.229587104866e-04, 3.1066e-01, 1.4448e-03, - 2DIAGNOSTIC, 43, -6.045767155860e-01, 1.072452991457e-04, 3.1216e-01, 1.5020e-03, - 2DIAGNOSTIC, 44, -6.047371279617e-01, 8.446174475348e-05, 3.1362e-01, 1.4639e-03, - 2DIAGNOSTIC, 45, -6.049509199789e-01, 6.185758957442e-05, 3.1502e-01, 1.3940e-03, - 2DIAGNOSTIC, 46, -6.058265475050e-01, 5.875012115921e-05, 3.1652e-01, 1.5011e-03, - 2DIAGNOSTIC, 47, -6.075958767083e-01, 7.769715903556e-05, 3.1797e-01, 1.4460e-03, - 2DIAGNOSTIC, 48, -6.105686452638e-01, 1.224431775153e-04, 3.2009e-01, 2.1288e-03, - 2DIAGNOSTIC, 49, -6.122079345403e-01, 1.767405848210e-04, 3.2162e-01, 1.5280e-03, - 2DIAGNOSTIC, 50, -6.126988924961e-01, 2.197619559203e-04, 3.2303e-01, 1.4122e-03, - 2DIAGNOSTIC, 51, -6.150689972031e-01, 2.645147005167e-04, 3.2540e-01, 2.3618e-03, - 2DIAGNOSTIC, 52, -6.154834519496e-01, 2.870681950775e-04, 3.2689e-01, 1.4961e-03, - 2DIAGNOSTIC, 53, -6.156791957793e-01, 2.853331366383e-04, 3.2854e-01, 1.6489e-03, - 2DIAGNOSTIC, 54, -6.162286083912e-01, 2.634433922370e-04, 3.3001e-01, 1.4648e-03, - 2DIAGNOSTIC, 55, -6.166567215635e-01, 2.233755138643e-04, 3.3178e-01, 1.7731e-03, - 2DIAGNOSTIC, 56, -6.202166389267e-01, 2.037572252575e-04, 3.3379e-01, 2.0161e-03, - 2DIAGNOSTIC, 57, -6.276043456912e-01, 2.459829146350e-04, 3.3583e-01, 2.0361e-03, - 2DIAGNOSTIC, 58, -6.292783062773e-01, 3.023464608776e-04, 3.3747e-01, 1.6391e-03, - 2DIAGNOSTIC, 59, -6.297003304801e-01, 3.463057634916e-04, 3.3931e-01, 1.8449e-03, - 2DIAGNOSTIC, 60, -6.298034381768e-01, 3.608483494087e-04, 3.4072e-01, 1.4009e-03, - 2DIAGNOSTIC, 61, -6.289238338314e-01, 3.521445989768e-04, 3.4219e-01, 1.4720e-03, - 2DIAGNOSTIC, 62, -6.290096850899e-01, 3.132249522720e-04, 3.4366e-01, 1.4760e-03, - 2DIAGNOSTIC, 63, -6.295821440283e-01, 2.516191989862e-04, 3.4516e-01, 1.4930e-03, - 2DIAGNOSTIC, 64, -6.297536820352e-01, 1.745498630416e-04, 3.4671e-01, 1.5521e-03, - 2DIAGNOSTIC, 65, -6.319827456744e-01, 1.040698017357e-04, 3.4989e-01, 3.1769e-03, - 2DIAGNOSTIC, 66, -6.326187639958e-01, 5.621540100225e-05, 3.5173e-01, 1.8399e-03, - 2DIAGNOSTIC, 67, -6.329248648228e-01, 6.188154899005e-05, 3.5348e-01, 1.7500e-03, - 2DIAGNOSTIC, 68, -6.333617865204e-01, 7.697363570443e-05, 3.5564e-01, 2.1639e-03, - 2DIAGNOSTIC, 69, -6.331179411283e-01, 8.533696274542e-05, 3.5715e-01, 1.5061e-03, - 2DIAGNOSTIC, 70, -6.335555995955e-01, 8.920489569347e-05, 3.5863e-01, 1.4839e-03, - 2DIAGNOSTIC, 71, -6.337645940911e-01, 7.956170670188e-05, 3.6013e-01, 1.4980e-03, - 2DIAGNOSTIC, 72, -6.339725280472e-01, 6.468328164857e-05, 3.6202e-01, 1.8890e-03, - 2DIAGNOSTIC, 73, -6.340405139356e-01, 4.861706225517e-05, 3.6364e-01, 1.6210e-03, - 2DIAGNOSTIC, 74, -6.341687171863e-01, 3.008778078671e-05, 3.6509e-01, 1.4529e-03, - 2DIAGNOSTIC, 75, -6.342478533365e-01, 2.437976097852e-05, 3.6658e-01, 1.4889e-03, - 2DIAGNOSTIC, 76, -6.343247940447e-01, 2.108135486704e-05, 3.6807e-01, 1.4880e-03, - 2DIAGNOSTIC, 77, -6.344009607602e-01, 1.826102738862e-05, 3.7046e-01, 2.3930e-03, - 2DIAGNOSTIC, 78, -6.350389743019e-01, 2.067624354891e-05, 3.7315e-01, 2.6920e-03, - 2DIAGNOSTIC, 79, -6.350746889692e-01, 1.961849430709e-05, 3.7505e-01, 1.8969e-03, - 2DIAGNOSTIC, 80, -6.352289212851e-01, 2.039659128205e-05, 3.7697e-01, 1.9221e-03, - 2DIAGNOSTIC, 81, -6.358962800248e-01, 2.454646419129e-05, 3.7886e-01, 1.8852e-03, - 2DIAGNOSTIC, 82, -6.355158178030e-01, 2.510886566249e-05, 3.8036e-01, 1.5001e-03, - 2DIAGNOSTIC, 83, -6.356037080096e-01, 2.424520447607e-05, 3.8245e-01, 2.0950e-03, - 2DIAGNOSTIC, 84, -6.356719498603e-01, 2.224827200496e-05, 3.8414e-01, 1.6870e-03, - 2DIAGNOSTIC, 85, -6.357202886221e-01, 1.890858449721e-05, 3.8585e-01, 1.7149e-03, - 2DIAGNOSTIC, 86, -6.360948601815e-01, 1.640969850448e-05, 3.8750e-01, 1.6420e-03, - 2DIAGNOSTIC, 87, -6.350348894768e-01, 6.798407737540e-06, 3.8924e-01, 1.7469e-03, - 2DIAGNOSTIC, 88, -6.353000613053e-01, 2.065477478795e-06, 3.9089e-01, 1.6460e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.111908799975e-01, 1.797693134862e+308, 6.4177e-01, 2.5088e-01, - 2DIAGNOSTIC, 2, -5.111448323262e-01, 1.797693134862e+308, 6.4392e-01, 2.1529e-03, - 2DIAGNOSTIC, 3, -5.134727996723e-01, 1.797693134862e+308, 6.4612e-01, 2.1980e-03, - 2DIAGNOSTIC, 4, -5.166712656162e-01, 1.797693134862e+308, 6.4823e-01, 2.1150e-03, - 2DIAGNOSTIC, 5, -5.184021051898e-01, 1.797693134862e+308, 6.5031e-01, 2.0740e-03, - 2DIAGNOSTIC, 6, -5.197947911615e-01, 1.797693134862e+308, 6.5230e-01, 1.9989e-03, - 2DIAGNOSTIC, 7, -5.211074141341e-01, 1.797693134862e+308, 6.5447e-01, 2.1620e-03, - 2DIAGNOSTIC, 8, -5.237040204550e-01, 1.797693134862e+308, 6.5640e-01, 1.9331e-03, - 2DIAGNOSTIC, 9, -5.279540873766e-01, 1.797693134862e+308, 6.5916e-01, 2.7580e-03, - 2DIAGNOSTIC, 10, -5.310494905137e-01, 2.412098047745e-03, 6.6163e-01, 2.4731e-03, - 2DIAGNOSTIC, 11, -5.310038692730e-01, 2.277770757677e-03, 6.6491e-01, 3.2790e-03, - 2DIAGNOSTIC, 12, -5.315042276652e-01, 1.986307847450e-03, 6.6698e-01, 2.0730e-03, - 2DIAGNOSTIC, 13, -5.330931187432e-01, 1.721991984372e-03, 6.6916e-01, 2.1770e-03, - 2DIAGNOSTIC, 14, -5.345986043183e-01, 1.516837365273e-03, 6.7133e-01, 2.1720e-03, - 2DIAGNOSTIC, 15, -5.362626948945e-01, 1.321642465833e-03, 6.7353e-01, 2.1980e-03, - 2DIAGNOSTIC, 16, -5.367651666992e-01, 1.096212201629e-03, 6.7635e-01, 2.8200e-03, - 2DIAGNOSTIC, 17, -5.375273181675e-01, 8.645706598771e-04, 6.7885e-01, 2.5048e-03, - 2DIAGNOSTIC, 18, -5.378409779787e-01, 6.636698958637e-04, 6.8140e-01, 2.5420e-03, - 2DIAGNOSTIC, 19, -5.377685612424e-01, 5.385669985996e-04, 6.8372e-01, 2.3241e-03, - 2DIAGNOSTIC, 20, -5.378018825934e-01, 4.611078195033e-04, 6.8622e-01, 2.4960e-03, - 2DIAGNOSTIC, 21, -5.376052761047e-01, 3.425815558663e-04, 6.8844e-01, 2.2221e-03, - 2DIAGNOSTIC, 22, -5.375951080385e-01, 2.149110747689e-04, 6.9061e-01, 2.1691e-03, - 2DIAGNOSTIC, 23, -5.377840036365e-01, 1.195489196171e-04, 6.9313e-01, 2.5239e-03, - 2DIAGNOSTIC, 24, -5.380104658763e-01, 5.910444459514e-05, 6.9561e-01, 2.4760e-03, - 2DIAGNOSTIC, 25, -5.380381127122e-01, 3.438817466107e-05, 6.9779e-01, 2.1870e-03, - 2DIAGNOSTIC, 26, -5.382523458326e-01, 2.305051732787e-05, 6.9997e-01, 2.1720e-03, - 2DIAGNOSTIC, 27, -5.386192935640e-01, 3.270689841798e-05, 7.0213e-01, 2.1670e-03, - 2DIAGNOSTIC, 28, -5.396643247825e-01, 6.445190393639e-05, 7.0432e-01, 2.1911e-03, - 2DIAGNOSTIC, 29, -5.405306950496e-01, 1.020929698861e-04, 7.0746e-01, 3.1331e-03, - 2DIAGNOSTIC, 30, -5.409417226114e-01, 1.355642767212e-04, 7.0964e-01, 2.1820e-03, - 2DIAGNOSTIC, 31, -5.413917659705e-01, 1.587729666030e-04, 7.1193e-01, 2.2879e-03, - 2DIAGNOSTIC, 32, -5.492996199058e-01, 2.971996285565e-04, 7.1525e-01, 3.3259e-03, - 2DIAGNOSTIC, 33, -5.557624492688e-01, 5.024175079073e-04, 7.1780e-01, 2.5430e-03, - 2DIAGNOSTIC, 34, -5.632403621894e-01, 7.664356417623e-04, 7.2019e-01, 2.3901e-03, - 2DIAGNOSTIC, 35, -5.649449995365e-01, 9.681077541707e-04, 7.2230e-01, 2.1110e-03, - 2DIAGNOSTIC, 36, -5.666494971201e-01, 1.096148901014e-03, 7.2495e-01, 2.6519e-03, - 2DIAGNOSTIC, 37, -5.673427065013e-01, 1.126826722850e-03, 7.2789e-01, 2.9449e-03, - 2DIAGNOSTIC, 38, -5.676649502687e-01, 1.065646923291e-03, 7.2996e-01, 2.0671e-03, - 2DIAGNOSTIC, 39, -5.688200548575e-01, 9.336798168073e-04, 7.3237e-01, 2.4040e-03, - 2DIAGNOSTIC, 40, -5.697242800769e-01, 7.385663925850e-04, 7.3512e-01, 2.7590e-03, - 2DIAGNOSTIC, 41, -5.698641417411e-01, 4.898604968818e-04, 7.3755e-01, 2.4211e-03, - 2DIAGNOSTIC, 42, -5.698889658903e-01, 3.056105532009e-04, 7.3967e-01, 2.1260e-03, - 2DIAGNOSTIC, 43, -5.702335989795e-01, 1.824910149433e-04, 7.4208e-01, 2.4121e-03, - 2DIAGNOSTIC, 44, -5.704999874287e-01, 1.396958876171e-04, 7.4418e-01, 2.0950e-03, - 2DIAGNOSTIC, 45, -5.705953204914e-01, 1.059130407482e-04, 7.4689e-01, 2.7099e-03, - 2DIAGNOSTIC, 46, -5.707266132177e-01, 8.454982462028e-05, 7.4932e-01, 2.4290e-03, - 2DIAGNOSTIC, 47, -5.707818636540e-01, 6.466363711201e-05, 7.5144e-01, 2.1231e-03, - 2DIAGNOSTIC, 48, -5.708155291139e-01, 4.312605777082e-05, 7.5387e-01, 2.4290e-03, - 2DIAGNOSTIC, 49, -5.709664504629e-01, 3.205831345355e-05, 7.5637e-01, 2.4972e-03, - 2DIAGNOSTIC, 50, -5.710101954498e-01, 2.829038193882e-05, 7.5856e-01, 2.1980e-03, - 2DIAGNOSTIC, 51, -5.719132220583e-01, 3.274310412302e-05, 7.6078e-01, 2.2161e-03, - 2DIAGNOSTIC, 52, -5.737212856382e-01, 5.198406324450e-05, 7.6329e-01, 2.5072e-03, - 2DIAGNOSTIC, 53, -5.743668702153e-01, 7.480188422034e-05, 7.6577e-01, 2.4791e-03, - 2DIAGNOSTIC, 54, -5.755870958955e-01, 1.040554918961e-04, 7.6888e-01, 3.1121e-03, - 2DIAGNOSTIC, 55, -5.763932659989e-01, 1.307212660702e-04, 7.7214e-01, 3.2561e-03, - 2DIAGNOSTIC, 56, -5.765113668956e-01, 1.460319219157e-04, 7.7470e-01, 2.5690e-03, - 2DIAGNOSTIC, 57, -5.765845211915e-01, 1.479033896513e-04, 7.7704e-01, 2.3310e-03, - 2DIAGNOSTIC, 58, -5.765785072948e-01, 1.358146871977e-04, 7.7934e-01, 2.3069e-03, - 2DIAGNOSTIC, 59, -5.767646206501e-01, 1.142558413270e-04, 7.8195e-01, 2.6052e-03, - 2DIAGNOSTIC, 60, -5.770059597191e-01, 8.483654597603e-05, 7.8417e-01, 2.2249e-03, - 2DIAGNOSTIC, 61, -5.777544186439e-01, 6.200862169830e-05, 7.8663e-01, 2.4590e-03, - 2DIAGNOSTIC, 62, -5.782760994764e-01, 5.335636490273e-05, 7.8883e-01, 2.1958e-03, - 2DIAGNOSTIC, 63, -5.796646694538e-01, 5.633348859130e-05, 7.9107e-01, 2.2440e-03, - 2DIAGNOSTIC, 64, -5.889115199531e-01, 1.376464061722e-04, 7.9395e-01, 2.8820e-03, - 2DIAGNOSTIC, 65, -5.943517745879e-01, 2.505049155218e-04, 7.9634e-01, 2.3861e-03, - 2DIAGNOSTIC, 66, -5.983690671856e-01, 3.674914201265e-04, 7.9932e-01, 2.9790e-03, - 2DIAGNOSTIC, 67, -5.993700283927e-01, 4.542952015056e-04, 8.0186e-01, 2.5380e-03, - 2DIAGNOSTIC, 68, -6.026802553423e-01, 5.199406798641e-04, 8.0412e-01, 2.2638e-03, - 2DIAGNOSTIC, 69, -6.136860173377e-01, 6.149154171299e-04, 8.0671e-01, 2.5930e-03, - 2DIAGNOSTIC, 70, -6.180028761030e-01, 6.780575745621e-04, 8.0967e-01, 2.9609e-03, - 2DIAGNOSTIC, 71, -6.258031578071e-01, 7.361128100183e-04, 8.1430e-01, 4.6301e-03, - 2DIAGNOSTIC, 72, -6.257152956197e-01, 7.254722430685e-04, 8.1670e-01, 2.3942e-03, - 2DIAGNOSTIC, 73, -6.260497082181e-01, 6.568397116993e-04, 8.1890e-01, 2.2061e-03, - 2DIAGNOSTIC, 74, -6.265002635917e-01, 5.922117124629e-04, 8.2112e-01, 2.2130e-03, - 2DIAGNOSTIC, 75, -6.275521749627e-01, 5.149395310017e-04, 8.2330e-01, 2.1870e-03, - 2DIAGNOSTIC, 76, -6.288251383698e-01, 4.256952726065e-04, 8.2580e-01, 2.5001e-03, - 2DIAGNOSTIC, 77, -6.294757614654e-01, 3.092833491148e-04, 8.2807e-01, 2.2690e-03, - 2DIAGNOSTIC, 78, -6.300343156788e-01, 1.905891008588e-04, 8.3035e-01, 2.2771e-03, - 2DIAGNOSTIC, 79, -6.315468384046e-01, 1.364567064547e-04, 8.3258e-01, 2.2330e-03, - 2DIAGNOSTIC, 80, -6.325690618211e-01, 1.025598903265e-04, 8.3489e-01, 2.3110e-03, - 2DIAGNOSTIC, 81, -6.343653259640e-01, 1.190919272420e-04, 8.3851e-01, 3.6130e-03, - 2DIAGNOSTIC, 82, -6.376129394449e-01, 1.429029230088e-04, 8.4159e-01, 3.0842e-03, - 2DIAGNOSTIC, 83, -6.391053154927e-01, 1.630162692873e-04, 8.4397e-01, 2.3742e-03, - 2DIAGNOSTIC, 84, -6.400320432214e-01, 1.750277665835e-04, 8.4632e-01, 2.3539e-03, - 2DIAGNOSTIC, 85, -6.416455925492e-01, 1.854734143517e-04, 8.4872e-01, 2.4028e-03, - 2DIAGNOSTIC, 86, -6.446811716917e-01, 2.024611361115e-04, 8.5113e-01, 2.4049e-03, - 2DIAGNOSTIC, 87, -6.729467953940e-01, 3.639762147514e-04, 8.5375e-01, 2.6250e-03, - 2DIAGNOSTIC, 88, -6.885701310359e-01, 5.726685425283e-04, 8.5722e-01, 3.4721e-03, - 2DIAGNOSTIC, 89, -6.908445145584e-01, 7.413182789201e-04, 8.5944e-01, 2.2101e-03, - 2DIAGNOSTIC, 90, -6.978847235382e-01, 8.810948279540e-04, 8.6190e-01, 2.4660e-03, - 2DIAGNOSTIC, 91, -7.009188806601e-01, 9.574623311810e-04, 8.6406e-01, 2.1629e-03, - 2DIAGNOSTIC, 92, -7.012734375298e-01, 9.559016522862e-04, 8.6682e-01, 2.7521e-03, - 2DIAGNOSTIC, 93, -7.028197989452e-01, 8.770957132214e-04, 8.6933e-01, 2.5091e-03, - 2DIAGNOSTIC, 94, -7.027361285518e-01, 7.218072810196e-04, 8.7190e-01, 2.5699e-03, - 2DIAGNOSTIC, 95, -7.041158754735e-01, 5.181899022153e-04, 8.7442e-01, 2.5260e-03, - 2DIAGNOSTIC, 96, -7.052296459053e-01, 2.872660155549e-04, 8.7704e-01, 2.6219e-03, - 2DIAGNOSTIC, 97, -7.082133207060e-01, 1.891103402856e-04, 8.7952e-01, 2.4779e-03, - 2DIAGNOSTIC, 98, -7.107629105328e-01, 1.649734515011e-04, 8.8224e-01, 2.7149e-03, - 2DIAGNOSTIC, 99, -7.106387793231e-01, 1.351103046173e-04, 8.8495e-01, 2.7111e-03, - 2DIAGNOSTIC, 100, -7.108756723005e-01, 1.280590868046e-04, 8.8755e-01, 2.6050e-03, - 2DIAGNOSTIC, 101, -7.107256888436e-01, 1.226144328797e-04, 8.9058e-01, 3.0320e-03, - 2DIAGNOSTIC, 102, -7.106672205731e-01, 1.064922011511e-04, 8.9371e-01, 3.1290e-03, - 2DIAGNOSTIC, 103, -7.107073663137e-01, 8.781565368552e-05, 8.9682e-01, 3.1028e-03, - 2DIAGNOSTIC, 104, -7.105525507214e-01, 6.006167957173e-05, 8.9938e-01, 2.5659e-03, - 2DIAGNOSTIC, 105, -7.102335493716e-01, 3.220687917415e-05, 9.0148e-01, 2.0971e-03, - 2DIAGNOSTIC, 106, -7.102835832306e-01, 6.924158193231e-06, 9.0359e-01, 2.1138e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.769939598477e-01, 1.797693134862e+308, 1.1724e+00, 2.6876e-01, - 2DIAGNOSTIC, 2, -5.785153841040e-01, 1.797693134862e+308, 1.1855e+00, 1.3166e-02, - 2DIAGNOSTIC, 3, -5.801344591533e-01, 1.797693134862e+308, 1.1986e+00, 1.3106e-02, - 2DIAGNOSTIC, 4, -5.810091121478e-01, 1.797693134862e+308, 1.2117e+00, 1.3085e-02, - 2DIAGNOSTIC, 5, -5.816485491630e-01, 1.797693134862e+308, 1.2248e+00, 1.3059e-02, - 2DIAGNOSTIC, 6, -5.822879142489e-01, 1.797693134862e+308, 1.2379e+00, 1.3098e-02, - 2DIAGNOSTIC, 7, -5.830591703498e-01, 1.797693134862e+308, 1.2529e+00, 1.5041e-02, - 2DIAGNOSTIC, 8, -5.834240121062e-01, 1.797693134862e+308, 1.2730e+00, 2.0122e-02, - 2DIAGNOSTIC, 9, -5.835635202185e-01, 1.797693134862e+308, 1.2864e+00, 1.3343e-02, - 2DIAGNOSTIC, 10, -5.844977014156e-01, 7.502774223032e-04, 1.3021e+00, 1.5748e-02, - 2DIAGNOSTIC, 11, -5.852057683220e-01, 5.913473309384e-04, 1.3188e+00, 1.6647e-02, - 2DIAGNOSTIC, 12, -5.856521834159e-01, 4.843473798388e-04, 1.3354e+00, 1.6668e-02, - 2DIAGNOSTIC, 13, -5.857883670463e-01, 4.160983887325e-04, 1.3477e+00, 1.2309e-02, - 2DIAGNOSTIC, 14, -5.859536235722e-01, 3.565887495812e-04, 1.3668e+00, 1.9052e-02, - 2DIAGNOSTIC, 15, -5.859499736682e-01, 2.928073959507e-04, 1.3807e+00, 1.3860e-02, - 2DIAGNOSTIC, 16, -5.859275418584e-01, 2.283240595033e-04, 1.3945e+00, 1.3795e-02, - 2DIAGNOSTIC, 17, -5.859017162111e-01, 1.719710379189e-04, 1.4064e+00, 1.1943e-02, - 2DIAGNOSTIC, 18, -5.858474154640e-01, 1.149978254895e-04, 1.4184e+00, 1.1961e-02, - 2DIAGNOSTIC, 19, -5.858006691853e-01, 5.559089749010e-05, 1.4313e+00, 1.2914e-02, - 2DIAGNOSTIC, 20, -5.858423772399e-01, 2.058408646264e-05, 1.4431e+00, 1.1835e-02, - 2DIAGNOSTIC, 21, -5.859229428274e-01, 5.192145178121e-06, 1.4552e+00, 1.2059e-02, - 2DIAGNOSTIC, 22, -5.860126620379e-01, 2.639929507435e-06, 1.4689e+00, 1.3775e-02, - 2DIAGNOSTIC, 23, -5.860514993268e-01, 3.799573809887e-06, 1.4828e+00, 1.3820e-02, - 2DIAGNOSTIC, 24, -5.860114116831e-01, 7.205247186427e-06, 1.4965e+00, 1.3772e-02, - 2DIAGNOSTIC, 25, -5.860069112928e-01, 9.660248850907e-06, 1.5104e+00, 1.3853e-02, - 2DIAGNOSTIC, 26, -5.859629354822e-01, 9.852748211442e-06, 1.5242e+00, 1.3790e-02, - 2DIAGNOSTIC, 27, -5.859556376135e-01, 8.626530210956e-06, 1.5363e+00, 1.2129e-02, - 2DIAGNOSTIC, 28, -5.859466274648e-01, 5.719604698473e-06, 1.5485e+00, 1.2194e-02, - 2DIAGNOSTIC, 29, -5.860191380536e-01, 3.033953675541e-06, 1.5650e+00, 1.6451e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.944146159913e-01, 1.797693134862e+308, 1.9992e+00, 4.3423e-01, - 2DIAGNOSTIC, 2, -4.946278034733e-01, 1.797693134862e+308, 2.0839e+00, 8.4699e-02, - 2DIAGNOSTIC, 3, -4.948869053471e-01, 1.797693134862e+308, 2.1674e+00, 8.3508e-02, - 2DIAGNOSTIC, 4, -4.952008702053e-01, 1.797693134862e+308, 2.2644e+00, 9.7014e-02, - 2DIAGNOSTIC, 5, -4.962355713881e-01, 1.797693134862e+308, 2.3736e+00, 1.0923e-01, - 2DIAGNOSTIC, 6, -4.963727398345e-01, 1.797693134862e+308, 2.5009e+00, 1.2731e-01, - 2DIAGNOSTIC, 7, -4.963822302994e-01, 1.797693134862e+308, 2.6199e+00, 1.1899e-01, - 2DIAGNOSTIC, 8, -4.963980206574e-01, 1.797693134862e+308, 2.7148e+00, 9.4839e-02, - 2DIAGNOSTIC, 9, -4.963913830498e-01, 1.797693134862e+308, 2.8363e+00, 1.2157e-01, - 2DIAGNOSTIC, 10, -4.963912954780e-01, 2.985815681899e-04, 2.9308e+00, 9.4425e-02, - 2DIAGNOSTIC, 11, -4.963910999538e-01, 2.108731071788e-04, 3.0523e+00, 1.2156e-01, - 2DIAGNOSTIC, 12, -4.963898799468e-01, 1.298694993875e-04, 3.1498e+00, 9.7493e-02, - 2DIAGNOSTIC, 13, -4.963887404619e-01, 6.146915353972e-05, 3.2465e+00, 9.6690e-02, - 2DIAGNOSTIC, 14, -4.963823206522e-01, 8.940861347173e-06, 3.3479e+00, 1.0138e-01, - 2DIAGNOSTIC, 15, -4.963810410608e-01, 2.165673746043e-06, 3.4318e+00, 8.3926e-02, - 2DIAGNOSTIC, 16, -4.963834245815e-01, 1.223470953132e-06, 3.5278e+00, 9.5994e-02, - Elapsed time (stage 0): 3.6605e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.924903517810e-01, 1.797693134862e+308, 2.1802e-01, 2.1802e-01, - 2DIAGNOSTIC, 2, -7.949136392358e-01, 1.797693134862e+308, 2.1994e-01, 1.9212e-03, - 2DIAGNOSTIC, 3, -7.963260364847e-01, 1.797693134862e+308, 2.2156e-01, 1.6150e-03, - 2DIAGNOSTIC, 4, -7.971424287826e-01, 1.797693134862e+308, 2.2278e-01, 1.2250e-03, - 2DIAGNOSTIC, 5, -8.011578213287e-01, 1.797693134862e+308, 2.2405e-01, 1.2660e-03, - 2DIAGNOSTIC, 6, -8.046694363691e-01, 1.797693134862e+308, 2.2532e-01, 1.2722e-03, - 2DIAGNOSTIC, 7, -8.095223958631e-01, 1.797693134862e+308, 2.2649e-01, 1.1680e-03, - 2DIAGNOSTIC, 8, -8.170038626633e-01, 1.797693134862e+308, 2.2775e-01, 1.2560e-03, - 2DIAGNOSTIC, 9, -8.347761153224e-01, 1.797693134862e+308, 2.2887e-01, 1.1201e-03, - 2DIAGNOSTIC, 10, -8.570084426497e-01, 4.218724040652e-03, 2.3063e-01, 1.7650e-03, - 2DIAGNOSTIC, 11, -8.818520180584e-01, 5.523742331604e-03, 2.3217e-01, 1.5430e-03, - 2DIAGNOSTIC, 12, -9.000495641186e-01, 6.678349449992e-03, 2.3403e-01, 1.8549e-03, - 2DIAGNOSTIC, 13, -8.989197365901e-01, 7.050296350195e-03, 2.3557e-01, 1.5380e-03, - 2DIAGNOSTIC, 14, -9.121010864985e-01, 7.067270090287e-03, 2.3718e-01, 1.6079e-03, - 2DIAGNOSTIC, 15, -9.176295671479e-01, 6.640528434916e-03, 2.3882e-01, 1.6401e-03, - 2DIAGNOSTIC, 16, -9.190003264247e-01, 5.761007016067e-03, 2.4074e-01, 1.9271e-03, - 2DIAGNOSTIC, 17, -9.187424911741e-01, 4.560382520896e-03, 2.4232e-01, 1.5769e-03, - 2DIAGNOSTIC, 18, -9.190714150425e-01, 3.231680910262e-03, 2.4375e-01, 1.4319e-03, - 2DIAGNOSTIC, 19, -9.187647725525e-01, 2.054813682579e-03, 2.4519e-01, 1.4350e-03, - 2DIAGNOSTIC, 20, -9.186303870362e-01, 1.167698860750e-03, 2.4677e-01, 1.5790e-03, - 2DIAGNOSTIC, 21, -9.181978463988e-01, 6.393282483897e-04, 2.4817e-01, 1.4071e-03, - 2DIAGNOSTIC, 22, -9.179152345117e-01, 3.741229871108e-04, 2.4973e-01, 1.5600e-03, - 2DIAGNOSTIC, 23, -9.181702125119e-01, 8.192676187369e-05, 2.5100e-01, 1.2701e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.834630216600e-01, 1.797693134862e+308, 4.6737e-01, 2.1636e-01, - 2DIAGNOSTIC, 2, -7.847556832366e-01, 1.797693134862e+308, 4.6977e-01, 2.4021e-03, - 2DIAGNOSTIC, 3, -7.882739193385e-01, 1.797693134862e+308, 4.7199e-01, 2.2171e-03, - 2DIAGNOSTIC, 4, -7.925400697532e-01, 1.797693134862e+308, 4.7436e-01, 2.3792e-03, - 2DIAGNOSTIC, 5, -7.946952686641e-01, 1.797693134862e+308, 4.7740e-01, 3.0310e-03, - 2DIAGNOSTIC, 6, -7.957414783599e-01, 1.797693134862e+308, 4.7955e-01, 2.1498e-03, - 2DIAGNOSTIC, 7, -7.973272270361e-01, 1.797693134862e+308, 4.8236e-01, 2.8141e-03, - 2DIAGNOSTIC, 8, -7.981958828937e-01, 1.797693134862e+308, 4.8520e-01, 2.8381e-03, - 2DIAGNOSTIC, 9, -7.989944573943e-01, 1.797693134862e+308, 4.8790e-01, 2.7039e-03, - 2DIAGNOSTIC, 10, -8.002119146875e-01, 1.384511387274e-03, 4.9120e-01, 3.2952e-03, - 2DIAGNOSTIC, 11, -8.005407116929e-01, 1.064997905032e-03, 4.9378e-01, 2.5842e-03, - 2DIAGNOSTIC, 12, -8.011015730863e-01, 7.582757188376e-04, 4.9691e-01, 3.1281e-03, - 2DIAGNOSTIC, 13, -8.016108906430e-01, 5.390055610316e-04, 4.9994e-01, 3.0339e-03, - 2DIAGNOSTIC, 14, -8.020320523969e-01, 4.209668622738e-04, 5.0433e-01, 4.3900e-03, - 2DIAGNOSTIC, 15, -8.021042511647e-01, 3.331572700225e-04, 5.0772e-01, 3.3839e-03, - 2DIAGNOSTIC, 16, -8.021726285109e-01, 2.504056859568e-04, 5.1101e-01, 3.2899e-03, - 2DIAGNOSTIC, 17, -8.026785063372e-01, 1.984257969348e-04, 5.1354e-01, 2.5380e-03, - 2DIAGNOSTIC, 18, -8.029931981830e-01, 1.569997371891e-04, 5.1653e-01, 2.9829e-03, - 2DIAGNOSTIC, 19, -8.037735177670e-01, 1.345766031423e-04, 5.1985e-01, 3.3181e-03, - 2DIAGNOSTIC, 20, -8.031023556970e-01, 1.116666642272e-04, 5.2219e-01, 2.3479e-03, - 2DIAGNOSTIC, 21, -8.037097905872e-01, 9.703831800573e-05, 5.2439e-01, 2.2008e-03, - 2DIAGNOSTIC, 22, -8.035673253581e-01, 8.110209225877e-05, 5.2740e-01, 3.0010e-03, - 2DIAGNOSTIC, 23, -8.035821320674e-01, 6.691435311434e-05, 5.3030e-01, 2.9089e-03, - 2DIAGNOSTIC, 24, -8.036044298870e-01, 5.439365321221e-05, 5.3322e-01, 2.9199e-03, - 2DIAGNOSTIC, 25, -8.036869690254e-01, 4.027969878043e-05, 5.3570e-01, 2.4750e-03, - 2DIAGNOSTIC, 26, -8.037217461029e-01, 2.490525764517e-05, 5.3815e-01, 2.4490e-03, - 2DIAGNOSTIC, 27, -8.035550142133e-01, 1.277926845410e-05, 5.4083e-01, 2.6820e-03, - 2DIAGNOSTIC, 28, -8.039378871288e-01, 9.110934466885e-06, 5.4352e-01, 2.6882e-03, - 2DIAGNOSTIC, 29, -8.035952484508e-01, 1.044528367843e-05, 5.4620e-01, 2.6860e-03, - 2DIAGNOSTIC, 30, -8.039915114000e-01, 7.445915361996e-06, 5.5417e-01, 7.9670e-03, - 2DIAGNOSTIC, 31, -8.039914908734e-01, 1.094331349248e-05, 5.5648e-01, 2.3041e-03, - 2DIAGNOSTIC, 32, -8.039915268356e-01, 1.171872272108e-05, 5.5885e-01, 2.3701e-03, - 2DIAGNOSTIC, 33, -8.039915876370e-01, 1.162089259683e-05, 5.6119e-01, 2.3460e-03, - 2DIAGNOSTIC, 34, -8.039916904142e-01, 1.073259849812e-05, 5.6350e-01, 2.3119e-03, - 2DIAGNOSTIC, 35, -8.039918641029e-01, 9.782185590900e-06, 5.6582e-01, 2.3172e-03, - 2DIAGNOSTIC, 36, -8.039921575052e-01, 8.410200855555e-06, 5.6825e-01, 2.4302e-03, - 2DIAGNOSTIC, 37, -8.039926527814e-01, 4.718778110591e-06, 5.7056e-01, 2.3110e-03, - 2DIAGNOSTIC, 38, -8.039934802053e-01, 4.575896455253e-06, 5.7285e-01, 2.2919e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.771386618335e-01, 1.797693134862e+308, 8.1372e-01, 2.4087e-01, - 2DIAGNOSTIC, 2, -6.785057716323e-01, 1.797693134862e+308, 8.2804e-01, 1.4321e-02, - 2DIAGNOSTIC, 3, -6.797828810464e-01, 1.797693134862e+308, 8.4138e-01, 1.3336e-02, - 2DIAGNOSTIC, 4, -6.810604155784e-01, 1.797693134862e+308, 8.5456e-01, 1.3182e-02, - 2DIAGNOSTIC, 5, -6.824757321606e-01, 1.797693134862e+308, 8.6781e-01, 1.3245e-02, - 2DIAGNOSTIC, 6, -6.840720492481e-01, 1.797693134862e+308, 8.8125e-01, 1.3445e-02, - 2DIAGNOSTIC, 7, -6.861499434712e-01, 1.797693134862e+308, 9.0488e-01, 2.3623e-02, - 2DIAGNOSTIC, 8, -6.871971337196e-01, 1.797693134862e+308, 9.1814e-01, 1.3261e-02, - 2DIAGNOSTIC, 9, -6.874440649272e-01, 1.797693134862e+308, 9.3334e-01, 1.5199e-02, - 2DIAGNOSTIC, 10, -6.876643068736e-01, 1.092332421181e-03, 9.6119e-01, 2.7853e-02, - 2DIAGNOSTIC, 11, -6.876798665107e-01, 8.756124411948e-04, 9.7772e-01, 1.6528e-02, - 2DIAGNOSTIC, 12, -6.876691411649e-01, 6.626969716950e-04, 9.9357e-01, 1.5851e-02, - 2DIAGNOSTIC, 13, -6.876814071943e-01, 4.638271471013e-04, 1.0073e+00, 1.3772e-02, - 2DIAGNOSTIC, 14, -6.876990021515e-01, 2.901255238444e-04, 1.0265e+00, 1.9157e-02, - 2DIAGNOSTIC, 15, -6.877066833543e-01, 1.525511584678e-04, 1.0411e+00, 1.4589e-02, - 2DIAGNOSTIC, 16, -6.876787826893e-01, 5.799974858176e-05, 1.0552e+00, 1.4105e-02, - 2DIAGNOSTIC, 17, -6.877141059992e-01, 2.049300476352e-05, 1.0700e+00, 1.4850e-02, - 2DIAGNOSTIC, 18, -6.877155401906e-01, 9.485437519136e-06, 1.0847e+00, 1.4649e-02, - 2DIAGNOSTIC, 19, -6.877625415460e-01, 5.194663911946e-06, 1.0990e+00, 1.4271e-02, - 2DIAGNOSTIC, 20, -6.878222523932e-01, 6.786660579322e-06, 1.1121e+00, 1.3139e-02, - 2DIAGNOSTIC, 21, -6.878671048394e-01, 8.934308417474e-06, 1.1273e+00, 1.5249e-02, - 2DIAGNOSTIC, 22, -6.879449441187e-01, 1.145249970720e-05, 1.1410e+00, 1.3679e-02, - 2DIAGNOSTIC, 23, -6.879867921538e-01, 1.375590609631e-05, 1.1569e+00, 1.5898e-02, - 2DIAGNOSTIC, 24, -6.880626647670e-01, 1.631203035195e-05, 1.1713e+00, 1.4407e-02, - 2DIAGNOSTIC, 25, -6.880711459730e-01, 1.751588139215e-05, 1.1839e+00, 1.2552e-02, - 2DIAGNOSTIC, 26, -6.881410710044e-01, 1.776675972692e-05, 1.1963e+00, 1.2370e-02, - 2DIAGNOSTIC, 27, -6.882004182291e-01, 1.788134217737e-05, 1.2122e+00, 1.5964e-02, - 2DIAGNOSTIC, 28, -6.882445764239e-01, 1.705903125995e-05, 1.2262e+00, 1.3964e-02, - 2DIAGNOSTIC, 29, -6.882840786867e-01, 1.601443319527e-05, 1.2414e+00, 1.5249e-02, - 2DIAGNOSTIC, 30, -6.882919822517e-01, 1.456306643474e-05, 1.2623e+00, 2.0842e-02, - 2DIAGNOSTIC, 31, -6.882710369202e-01, 1.223441860472e-05, 1.2762e+00, 1.3908e-02, - 2DIAGNOSTIC, 32, -6.882609987434e-01, 9.864135764245e-06, 1.2900e+00, 1.3812e-02, - 2DIAGNOSTIC, 33, -6.882751238022e-01, 7.475385310964e-06, 1.3074e+00, 1.7371e-02, - 2DIAGNOSTIC, 34, -6.882810467501e-01, 5.603546381742e-06, 1.3207e+00, 1.3334e-02, - 2DIAGNOSTIC, 35, -6.883102541664e-01, 3.830287237626e-06, 1.3339e+00, 1.3206e-02, - 2DIAGNOSTIC, 36, -6.883429268901e-01, 3.049760900039e-06, 1.3492e+00, 1.5335e-02, - 2DIAGNOSTIC, 37, -6.883798073027e-01, 3.171309148491e-06, 1.3687e+00, 1.9446e-02, - 2DIAGNOSTIC, 38, -6.883931823334e-01, 3.673612596004e-06, 1.3824e+00, 1.3673e-02, - 2DIAGNOSTIC, 39, -6.883974499606e-01, 4.341091443764e-06, 1.3962e+00, 1.3831e-02, - 2DIAGNOSTIC, 40, -6.883957447524e-01, 4.710591025612e-06, 1.4124e+00, 1.6168e-02, - 2DIAGNOSTIC, 41, -6.884608429185e-01, 5.134878147881e-06, 1.4308e+00, 1.8493e-02, - 2DIAGNOSTIC, 42, -6.884798913257e-01, 5.187346108090e-06, 1.4460e+00, 1.5155e-02, - 2DIAGNOSTIC, 43, -6.884832206070e-01, 4.987508523836e-06, 1.4624e+00, 1.6386e-02, - 2DIAGNOSTIC, 44, -6.884872000825e-01, 4.495640231302e-06, 1.4766e+00, 1.4177e-02, - 2DIAGNOSTIC, 45, -6.884887826164e-01, 3.945596631919e-06, 1.4909e+00, 1.4328e-02, - 2DIAGNOSTIC, 46, -6.885139393948e-01, 3.612427594731e-06, 1.5085e+00, 1.7587e-02, - 2DIAGNOSTIC, 47, -6.886474950803e-01, 4.500098627978e-06, 1.5221e+00, 1.3625e-02, - 2DIAGNOSTIC, 48, -6.887952685021e-01, 6.349870327250e-06, 1.5401e+00, 1.7964e-02, - 2DIAGNOSTIC, 49, -6.888487833511e-01, 8.057209920091e-06, 1.5617e+00, 2.1619e-02, - 2DIAGNOSTIC, 50, -6.888682658526e-01, 9.139027826250e-06, 1.5793e+00, 1.7656e-02, - 2DIAGNOSTIC, 51, -6.888683500923e-01, 9.900773273515e-06, 1.5949e+00, 1.5516e-02, - 2DIAGNOSTIC, 52, -6.888684226701e-01, 9.880934054209e-06, 1.6091e+00, 1.4253e-02, - 2DIAGNOSTIC, 53, -6.888488839294e-01, 8.825990971684e-06, 1.6224e+00, 1.3258e-02, - 2DIAGNOSTIC, 54, -6.888491670772e-01, 7.064530691551e-06, 1.6377e+00, 1.5310e-02, - 2DIAGNOSTIC, 55, -6.888694935856e-01, 4.929238806895e-06, 1.6528e+00, 1.5075e-02, - 2DIAGNOSTIC, 56, -6.888510590063e-01, 2.486320967193e-06, 1.6663e+00, 1.3565e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.763282741584e-01, 1.797693134862e+308, 2.0998e+00, 4.3352e-01, - 2DIAGNOSTIC, 2, -5.774408387623e-01, 1.797693134862e+308, 2.1989e+00, 9.9074e-02, - 2DIAGNOSTIC, 3, -5.783305542676e-01, 1.797693134862e+308, 2.2989e+00, 1.0000e-01, - 2DIAGNOSTIC, 4, -5.788409637854e-01, 1.797693134862e+308, 2.3978e+00, 9.8906e-02, - 2DIAGNOSTIC, 5, -5.791634384630e-01, 1.797693134862e+308, 2.4947e+00, 9.6873e-02, - 2DIAGNOSTIC, 6, -5.796231297780e-01, 1.797693134862e+308, 2.6273e+00, 1.3261e-01, - 2DIAGNOSTIC, 7, -5.797814676781e-01, 1.797693134862e+308, 2.7433e+00, 1.1595e-01, - 2DIAGNOSTIC, 8, -5.799234285197e-01, 1.797693134862e+308, 2.8443e+00, 1.0100e-01, - 2DIAGNOSTIC, 9, -5.805548018953e-01, 1.797693134862e+308, 2.9588e+00, 1.1458e-01, - 2DIAGNOSTIC, 10, -5.813728300366e-01, 4.643983554106e-04, 3.0750e+00, 1.1612e-01, - 2DIAGNOSTIC, 11, -5.816003707420e-01, 3.775689880683e-04, 3.1923e+00, 1.1734e-01, - 2DIAGNOSTIC, 12, -5.816051132202e-01, 3.171188185212e-04, 3.3070e+00, 1.1472e-01, - 2DIAGNOSTIC, 13, -5.816013567361e-01, 2.713021582237e-04, 3.4795e+00, 1.7246e-01, - 2DIAGNOSTIC, 14, -5.816016921774e-01, 2.251158559541e-04, 3.5817e+00, 1.0222e-01, - 2DIAGNOSTIC, 15, -5.816017146948e-01, 1.744533997382e-04, 3.6803e+00, 9.8567e-02, - 2DIAGNOSTIC, 16, -5.816017234471e-01, 1.284327535641e-04, 3.7889e+00, 1.0867e-01, - 2DIAGNOSTIC, 17, -5.816010112625e-01, 8.120395647438e-05, 3.9118e+00, 1.2281e-01, - 2DIAGNOSTIC, 18, -5.815997051646e-01, 3.561376597606e-05, 4.0077e+00, 9.5973e-02, - 2DIAGNOSTIC, 19, -5.815968723477e-01, 7.368339461550e-06, 4.1146e+00, 1.0690e-01, - 2DIAGNOSTIC, 20, -5.815982760725e-01, 1.330180435702e-06, 4.1970e+00, 8.2393e-02, - 2DIAGNOSTIC, 21, -5.815946014010e-01, 1.106431760156e-06, 4.2928e+00, 9.5815e-02, - Elapsed time (stage 1): 4.4238e+00 - - -Total elapsed time: 8.0869e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:31:07 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:31:07 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x565149eab4f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.551, 62.0027, -109.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x565149eb0fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc6606d9010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x565149eac850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.551, 62.0027, -109.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x565149ea9f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc65d01a010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x565149ec3b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.551, 62.0027, -109.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x565149eb0550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc65995b010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x565149ec8d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.551, 62.0027, -109.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x565149ec6c00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc65629c010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x565149ecaf70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.551, 62.0027, -109.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x565149ec93a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc652bdd010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x565149ecb540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [112.551, 62.0027, -109.248] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x565149ecb4d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7fc64f51e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.037578747157e-01, 1.797693134862e+308, 2.1659e-01, 2.1659e-01, - 2DIAGNOSTIC, 2, -6.071640476314e-01, 1.797693134862e+308, 2.1904e-01, 2.4459e-03, - 2DIAGNOSTIC, 3, -6.131118405545e-01, 1.797693134862e+308, 2.2138e-01, 2.3401e-03, - 2DIAGNOSTIC, 4, -6.226506419841e-01, 1.797693134862e+308, 2.2384e-01, 2.4571e-03, - 2DIAGNOSTIC, 5, -6.351317819646e-01, 1.797693134862e+308, 2.2632e-01, 2.4869e-03, - 2DIAGNOSTIC, 6, -6.440655020428e-01, 1.797693134862e+308, 2.2863e-01, 2.3079e-03, - 2DIAGNOSTIC, 7, -6.451465902098e-01, 1.797693134862e+308, 2.3085e-01, 2.2240e-03, - 2DIAGNOSTIC, 8, -6.451665561048e-01, 1.797693134862e+308, 2.3280e-01, 1.9469e-03, - 2DIAGNOSTIC, 9, -6.450438503398e-01, 1.797693134862e+308, 2.3484e-01, 2.0409e-03, - 2DIAGNOSTIC, 10, -6.450726840126e-01, 4.910665185707e-03, 2.3826e-01, 3.4170e-03, - 2DIAGNOSTIC, 11, -6.452296701986e-01, 3.542407022207e-03, 2.4115e-01, 2.8951e-03, - 2DIAGNOSTIC, 12, -6.451278779343e-01, 2.216786330420e-03, 2.4347e-01, 2.3141e-03, - 2DIAGNOSTIC, 13, -6.451722173701e-01, 1.106526475497e-03, 2.4602e-01, 2.5480e-03, - 2DIAGNOSTIC, 14, -6.451923883288e-01, 3.556411386398e-04, 2.4886e-01, 2.8398e-03, - 2DIAGNOSTIC, 15, -6.452017776809e-01, 3.928607015709e-05, 2.5108e-01, 2.2280e-03, - 2DIAGNOSTIC, 16, -6.452074329423e-01, 8.315096736655e-06, 2.5366e-01, 2.5780e-03, - 2DIAGNOSTIC, 17, -6.452126567953e-01, 8.975837943223e-06, 2.5592e-01, 2.2581e-03, - 2DIAGNOSTIC, 18, -6.452167023458e-01, 9.653930769210e-06, 2.5899e-01, 3.0720e-03, - 2DIAGNOSTIC, 19, -6.452187266639e-01, 6.674211452562e-06, 2.6149e-01, 2.4970e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.395726498200e-01, 1.797693134862e+308, 5.0487e-01, 2.4338e-01, - 2DIAGNOSTIC, 2, -5.409250152006e-01, 1.797693134862e+308, 5.1857e-01, 1.3698e-02, - 2DIAGNOSTIC, 3, -5.420320004920e-01, 1.797693134862e+308, 5.3408e-01, 1.5511e-02, - 2DIAGNOSTIC, 4, -5.423306335717e-01, 1.797693134862e+308, 5.5113e-01, 1.7048e-02, - 2DIAGNOSTIC, 5, -5.423610646392e-01, 1.797693134862e+308, 5.6655e-01, 1.5423e-02, - 2DIAGNOSTIC, 6, -5.423320587429e-01, 1.797693134862e+308, 5.8208e-01, 1.5526e-02, - 2DIAGNOSTIC, 7, -5.423299504967e-01, 1.797693134862e+308, 5.9760e-01, 1.5517e-02, - 2DIAGNOSTIC, 8, -5.423311305795e-01, 1.797693134862e+308, 6.1176e-01, 1.4162e-02, - 2DIAGNOSTIC, 9, -5.423328599887e-01, 1.797693134862e+308, 6.2588e-01, 1.4126e-02, - 2DIAGNOSTIC, 10, -5.423177432501e-01, 2.224082379855e-04, 6.4346e-01, 1.7577e-02, - 2DIAGNOSTIC, 11, -5.423338362397e-01, 8.135385202850e-05, 6.5987e-01, 1.6411e-02, - 2DIAGNOSTIC, 12, -5.423229156667e-01, 1.418345469266e-05, 6.7376e-01, 1.3888e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.545734644234e-01, 1.797693134862e+308, 1.0987e+00, 4.2495e-01, - 2DIAGNOSTIC, 2, -4.554749697529e-01, 1.797693134862e+308, 1.1921e+00, 9.3377e-02, - 2DIAGNOSTIC, 3, -4.561884550716e-01, 1.797693134862e+308, 1.2849e+00, 9.2811e-02, - 2DIAGNOSTIC, 4, -4.563760111473e-01, 1.797693134862e+308, 1.3792e+00, 9.4281e-02, - 2DIAGNOSTIC, 5, -4.564065768098e-01, 1.797693134862e+308, 1.5531e+00, 1.7390e-01, - 2DIAGNOSTIC, 6, -4.564060362119e-01, 1.797693134862e+308, 1.6592e+00, 1.0607e-01, - 2DIAGNOSTIC, 7, -4.564059552250e-01, 1.797693134862e+308, 1.7662e+00, 1.0708e-01, - 2DIAGNOSTIC, 8, -4.564043163048e-01, 1.797693134862e+308, 1.8707e+00, 1.0449e-01, - 2DIAGNOSTIC, 9, -4.564039118191e-01, 1.797693134862e+308, 1.9606e+00, 8.9843e-02, - 2DIAGNOSTIC, 10, -4.564039568688e-01, 1.781202655945e-04, 2.0657e+00, 1.0516e-01, - 2DIAGNOSTIC, 11, -4.564050265486e-01, 6.728834659106e-05, 2.1695e+00, 1.0374e-01, - 2DIAGNOSTIC, 12, -4.564045205686e-01, 1.502559640426e-05, 2.2742e+00, 1.0476e-01, - 2DIAGNOSTIC, 13, -4.564037192878e-01, 3.608121163692e-06, 2.3654e+00, 9.1154e-02, - 2DIAGNOSTIC, 14, -4.564032276734e-01, 2.004348933396e-06, 2.4695e+00, 1.0414e-01, - 2DIAGNOSTIC, 15, -4.564027841182e-01, 1.889299920732e-06, 2.5884e+00, 1.1888e-01, - 2DIAGNOSTIC, 16, -4.564032525202e-01, 1.805310789749e-06, 2.6932e+00, 1.0486e-01, - 2DIAGNOSTIC, 17, -4.564022033828e-01, 1.707566019818e-06, 2.7869e+00, 9.3681e-02, - 2DIAGNOSTIC, 18, -4.564013555196e-01, 1.552409641357e-06, 2.8798e+00, 9.2921e-02, - 2DIAGNOSTIC, 19, -4.563994361069e-01, 1.358533696011e-06, 2.9722e+00, 9.2358e-02, - 2DIAGNOSTIC, 20, -4.564007191989e-01, 1.254344146294e-06, 3.0656e+00, 9.3388e-02, - 2DIAGNOSTIC, 21, -4.564012324463e-01, 1.236050192831e-06, 3.1578e+00, 9.2229e-02, - 2DIAGNOSTIC, 22, -4.564041617725e-01, 1.314051604986e-06, 3.2514e+00, 9.3606e-02, - 2DIAGNOSTIC, 23, -4.564114492283e-01, 1.572895567868e-06, 3.3454e+00, 9.3972e-02, - 2DIAGNOSTIC, 24, -4.564121380980e-01, 1.794076642171e-06, 3.4523e+00, 1.0686e-01, - 2DIAGNOSTIC, 25, -4.564081707826e-01, 1.845176207736e-06, 3.5731e+00, 1.2089e-01, - 2DIAGNOSTIC, 26, -4.564090540973e-01, 1.875787888662e-06, 3.6788e+00, 1.0570e-01, - 2DIAGNOSTIC, 27, -4.564085961571e-01, 1.805217695584e-06, 3.7857e+00, 1.0688e-01, - 2DIAGNOSTIC, 28, -4.564080665120e-01, 1.647737267844e-06, 3.8822e+00, 9.6520e-02, - 2DIAGNOSTIC, 29, -4.564077556517e-01, 1.405290113284e-06, 3.9716e+00, 8.9345e-02, - 2DIAGNOSTIC, 30, -4.564062523379e-01, 1.149362093666e-06, 4.0481e+00, 7.6515e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.958715017613e-01, 1.797693134862e+308, 5.3733e+00, 1.3252e+00, - 2DIAGNOSTIC, 2, -3.959047366406e-01, 1.797693134862e+308, 5.9840e+00, 6.1070e-01, - 2DIAGNOSTIC, 3, -3.959087305564e-01, 1.797693134862e+308, 6.5452e+00, 5.6128e-01, - 2DIAGNOSTIC, 4, -3.959094460986e-01, 1.797693134862e+308, 7.1509e+00, 6.0564e-01, - 2DIAGNOSTIC, 5, -3.959083819237e-01, 1.797693134862e+308, 7.7231e+00, 5.7223e-01, - 2DIAGNOSTIC, 6, -3.959094706666e-01, 1.797693134862e+308, 8.2712e+00, 5.4810e-01, - 2DIAGNOSTIC, 7, -3.959099178898e-01, 1.797693134862e+308, 8.8757e+00, 6.0450e-01, - 2DIAGNOSTIC, 8, -3.959087456299e-01, 1.797693134862e+308, 9.4506e+00, 5.7493e-01, - 2DIAGNOSTIC, 9, -3.959081829444e-01, 1.797693134862e+308, 1.0150e+01, 6.9973e-01, - 2DIAGNOSTIC, 10, -3.959080099218e-01, 6.047454526426e-06, 1.0841e+01, 6.9067e-01, - 2DIAGNOSTIC, 11, -3.959079798919e-01, 3.020424085703e-06, 1.1447e+01, 6.0614e-01, - 2DIAGNOSTIC, 12, -3.959075305136e-01, 2.439269736698e-06, 1.2056e+01, 6.0877e-01, - 2DIAGNOSTIC, 13, -3.959074729208e-01, 2.184784501896e-06, 1.2722e+01, 6.6600e-01, - 2DIAGNOSTIC, 14, -3.959073664307e-01, 2.024835474901e-06, 1.3355e+01, 6.3276e-01, - 2DIAGNOSTIC, 15, -3.959072492203e-01, 1.850109472235e-06, 1.3895e+01, 5.4077e-01, - 2DIAGNOSTIC, 16, -3.959071526606e-01, 1.765109011106e-06, 1.4463e+01, 5.6753e-01, - 2DIAGNOSTIC, 17, -3.959071852502e-01, 1.732233167739e-06, 1.4987e+01, 5.2376e-01, - 2DIAGNOSTIC, 18, -3.959069149765e-01, 1.658818971954e-06, 1.5511e+01, 5.2463e-01, - 2DIAGNOSTIC, 19, -3.959068083967e-01, 1.578128544039e-06, 1.6025e+01, 5.1314e-01, - 2DIAGNOSTIC, 20, -3.959067295534e-01, 1.505308018124e-06, 1.6495e+01, 4.7020e-01, - 2DIAGNOSTIC, 21, -3.959066974549e-01, 1.445541854286e-06, 1.7083e+01, 5.8777e-01, - 2DIAGNOSTIC, 22, -3.959066519493e-01, 1.381442675939e-06, 1.7687e+01, 6.0425e-01, - 2DIAGNOSTIC, 23, -3.959067535016e-01, 1.330462254395e-06, 1.8236e+01, 5.4924e-01, - 2DIAGNOSTIC, 24, -3.959066302373e-01, 1.281842716687e-06, 1.8748e+01, 5.1169e-01, - 2DIAGNOSTIC, 25, -3.959064745236e-01, 1.233499970832e-06, 1.9396e+01, 6.4782e-01, - 2DIAGNOSTIC, 26, -3.959067173324e-01, 1.196563858039e-06, 1.9929e+01, 5.3313e-01, - 2DIAGNOSTIC, 27, -3.959064847899e-01, 1.159444432242e-06, 2.0527e+01, 5.9842e-01, - 2DIAGNOSTIC, 28, -3.959064110777e-01, 1.118114636864e-06, 2.1135e+01, 6.0783e-01, - 2DIAGNOSTIC, 29, -3.959062045926e-01, 1.073746801722e-06, 2.1730e+01, 5.9479e-01, - 2DIAGNOSTIC, 30, -3.959061143287e-01, 1.030608989018e-06, 2.2309e+01, 5.7902e-01, - Elapsed time (stage 0): 2.2659e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.328009445550e-01, 1.797693134862e+308, 1.8418e-01, 1.8418e-01, - 2DIAGNOSTIC, 2, -6.349930312778e-01, 1.797693134862e+308, 1.8605e-01, 1.8680e-03, - 2DIAGNOSTIC, 3, -6.377704140368e-01, 1.797693134862e+308, 1.8787e-01, 1.8201e-03, - 2DIAGNOSTIC, 4, -6.401675608936e-01, 1.797693134862e+308, 1.8976e-01, 1.8981e-03, - 2DIAGNOSTIC, 5, -6.417997121924e-01, 1.797693134862e+308, 1.9173e-01, 1.9631e-03, - 2DIAGNOSTIC, 6, -6.429912608983e-01, 1.797693134862e+308, 1.9370e-01, 1.9770e-03, - 2DIAGNOSTIC, 7, -6.439549176544e-01, 1.797693134862e+308, 1.9613e-01, 2.4240e-03, - 2DIAGNOSTIC, 8, -6.446492763524e-01, 1.797693134862e+308, 1.9864e-01, 2.5101e-03, - 2DIAGNOSTIC, 9, -6.450360547251e-01, 1.797693134862e+308, 2.0063e-01, 1.9870e-03, - 2DIAGNOSTIC, 10, -6.452392908982e-01, 1.245077336784e-03, 2.0276e-01, 2.1300e-03, - 2DIAGNOSTIC, 11, -6.459406866909e-01, 9.044392130953e-04, 2.0494e-01, 2.1861e-03, - 2DIAGNOSTIC, 12, -6.467804273365e-01, 6.498016678609e-04, 2.0741e-01, 2.4719e-03, - 2DIAGNOSTIC, 13, -6.474665711581e-01, 4.920864921600e-04, 2.1406e-01, 6.6450e-03, - 2DIAGNOSTIC, 14, -6.474665709896e-01, 3.875688815427e-04, 2.1615e-01, 2.0900e-03, - 2DIAGNOSTIC, 15, -6.474666299261e-01, 3.101212373387e-04, 2.1904e-01, 2.8930e-03, - 2DIAGNOSTIC, 16, -6.474667295533e-01, 2.466103857716e-04, 2.2196e-01, 2.9159e-03, - 2DIAGNOSTIC, 17, -6.474668979253e-01, 1.923338044396e-04, 2.2441e-01, 2.4488e-03, - 2DIAGNOSTIC, 18, -6.474671823656e-01, 1.432809087688e-04, 2.2659e-01, 2.1889e-03, - 2DIAGNOSTIC, 19, -6.474676625675e-01, 9.562666053789e-05, 2.2887e-01, 2.2759e-03, - 2DIAGNOSTIC, 20, -6.474684724260e-01, 4.856372301200e-05, 2.3113e-01, 2.2590e-03, - 2DIAGNOSTIC, 21, -6.474698330345e-01, 1.606164515881e-05, 2.3332e-01, 2.1911e-03, - 2DIAGNOSTIC, 22, -6.474721131696e-01, 1.656627856415e-06, 2.3551e-01, 2.1930e-03, - 2DIAGNOSTIC, 23, -6.474759159016e-01, 1.717717972916e-06, 2.3762e-01, 2.1050e-03, - 2DIAGNOSTIC, 24, -6.474821897961e-01, 1.856890988604e-06, 2.3972e-01, 2.1019e-03, - 2DIAGNOSTIC, 25, -6.474923648298e-01, 2.113966714991e-06, 2.4182e-01, 2.0969e-03, - 2DIAGNOSTIC, 26, -6.475085728153e-01, 2.545886913501e-06, 2.4397e-01, 2.1491e-03, - 2DIAGNOSTIC, 27, -6.475342481862e-01, 3.238709137716e-06, 2.4604e-01, 2.0761e-03, - 2DIAGNOSTIC, 28, -6.475703770880e-01, 4.253807605915e-06, 2.4813e-01, 2.0831e-03, - 2DIAGNOSTIC, 29, -6.476169334560e-01, 5.610187991084e-06, 2.5021e-01, 2.0809e-03, - 2DIAGNOSTIC, 30, -6.475313018906e-01, 5.194146590601e-06, 2.5231e-01, 2.0990e-03, - 2DIAGNOSTIC, 31, -6.475808217817e-01, 5.183467385005e-06, 2.5440e-01, 2.0919e-03, - 2DIAGNOSTIC, 32, -6.476210480638e-01, 5.334743196105e-06, 2.5651e-01, 2.1079e-03, - 2DIAGNOSTIC, 33, -6.478027316119e-01, 7.505291688407e-06, 2.5858e-01, 2.0719e-03, - 2DIAGNOSTIC, 34, -6.481508617352e-01, 1.346184284507e-05, 2.6093e-01, 2.3530e-03, - 2DIAGNOSTIC, 35, -6.484271601891e-01, 2.141929136697e-05, 2.6329e-01, 2.3601e-03, - 2DIAGNOSTIC, 36, -6.484492712197e-01, 2.743967998547e-05, 2.6590e-01, 2.6081e-03, - 2DIAGNOSTIC, 37, -6.485594870442e-01, 3.228160667592e-05, 2.6821e-01, 2.3150e-03, - 2DIAGNOSTIC, 38, -6.486240642570e-01, 3.498999224732e-05, 2.7051e-01, 2.2969e-03, - 2DIAGNOSTIC, 39, -6.484020578669e-01, 3.227985957184e-05, 2.7282e-01, 2.3079e-03, - 2DIAGNOSTIC, 40, -6.484178137888e-01, 2.599088451512e-05, 2.7538e-01, 2.5661e-03, - 2DIAGNOSTIC, 41, -6.484361606921e-01, 1.836433604005e-05, 2.7746e-01, 2.0769e-03, - 2DIAGNOSTIC, 42, -6.484387540643e-01, 9.844013031758e-06, 2.7954e-01, 2.0821e-03, - 2DIAGNOSTIC, 43, -6.484399234948e-01, 2.656956672353e-06, 2.8162e-01, 2.0719e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.384398171041e-01, 1.797693134862e+308, 4.8863e-01, 2.0701e-01, - 2DIAGNOSTIC, 2, -5.390783504011e-01, 1.797693134862e+308, 5.0284e-01, 1.4214e-02, - 2DIAGNOSTIC, 3, -5.395880999404e-01, 1.797693134862e+308, 5.1689e-01, 1.4050e-02, - 2DIAGNOSTIC, 4, -5.402254442454e-01, 1.797693134862e+308, 5.3119e-01, 1.4300e-02, - 2DIAGNOSTIC, 5, -5.410601871018e-01, 1.797693134862e+308, 5.4490e-01, 1.3703e-02, - 2DIAGNOSTIC, 6, -5.420727908187e-01, 1.797693134862e+308, 5.5876e-01, 1.3864e-02, - 2DIAGNOSTIC, 7, -5.432370636566e-01, 1.797693134862e+308, 5.7847e-01, 1.9711e-02, - 2DIAGNOSTIC, 8, -5.434449917441e-01, 1.797693134862e+308, 5.9033e-01, 1.1856e-02, - 2DIAGNOSTIC, 9, -5.436525715316e-01, 1.797693134862e+308, 6.0192e-01, 1.1597e-02, - 2DIAGNOSTIC, 10, -5.438704759284e-01, 7.226967449736e-04, 6.1695e-01, 1.5021e-02, - 2DIAGNOSTIC, 11, -5.439621837871e-01, 5.913307370684e-04, 6.2890e-01, 1.1952e-02, - 2DIAGNOSTIC, 12, -5.440972343011e-01, 4.623832076659e-04, 6.4764e-01, 1.8745e-02, - 2DIAGNOSTIC, 13, -5.442955552859e-01, 3.404174730438e-04, 6.6144e-01, 1.3801e-02, - 2DIAGNOSTIC, 14, -5.443472298094e-01, 2.310337066708e-04, 6.7562e-01, 1.4173e-02, - 2DIAGNOSTIC, 15, -5.444605962661e-01, 1.480629368115e-04, 6.9135e-01, 1.5732e-02, - 2DIAGNOSTIC, 16, -5.445703602315e-01, 9.789415320974e-05, 7.0884e-01, 1.7491e-02, - 2DIAGNOSTIC, 17, -5.446786772276e-01, 8.389812262127e-05, 7.2264e-01, 1.3798e-02, - 2DIAGNOSTIC, 18, -5.446814023197e-01, 6.984631923655e-05, 7.3855e-01, 1.5916e-02, - 2DIAGNOSTIC, 19, -5.446962316016e-01, 5.704566185243e-05, 7.5304e-01, 1.4488e-02, - 2DIAGNOSTIC, 20, -5.446977422053e-01, 4.615626736945e-05, 7.6653e-01, 1.3485e-02, - 2DIAGNOSTIC, 21, -5.447031700148e-01, 3.449904674198e-05, 7.8179e-01, 1.5265e-02, - 2DIAGNOSTIC, 22, -5.447051430189e-01, 2.395756282760e-05, 8.0298e-01, 2.1193e-02, - 2DIAGNOSTIC, 23, -5.447051686995e-01, 1.676920945166e-05, 8.1517e-01, 1.2186e-02, - 2DIAGNOSTIC, 24, -5.447053140805e-01, 9.862452861192e-06, 8.2860e-01, 1.3428e-02, - 2DIAGNOSTIC, 25, -5.447053617800e-01, 5.042411787434e-06, 8.4684e-01, 1.8245e-02, - 2DIAGNOSTIC, 26, -5.447053648688e-01, 2.389023029965e-06, 8.6714e-01, 2.0299e-02, - 2DIAGNOSTIC, 27, -5.447053649626e-01, 1.922789685548e-06, 8.8487e-01, 1.7724e-02, - 2DIAGNOSTIC, 28, -5.447053649797e-01, 1.464775980758e-06, 9.0397e-01, 1.9108e-02, - 2DIAGNOSTIC, 29, -5.447053649833e-01, 1.275956323391e-06, 9.2307e-01, 1.9101e-02, - 2DIAGNOSTIC, 30, -5.447053649839e-01, 1.107065810517e-06, 9.4253e-01, 1.9451e-02, - 2DIAGNOSTIC, 31, -5.447053649840e-01, 1.035518885167e-06, 9.6219e-01, 1.9663e-02, - 2DIAGNOSTIC, 32, -5.447053649840e-01, 1.000028503596e-06, 9.7890e-01, 1.6715e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.564059104690e-01, 1.797693134862e+308, 1.3596e+00, 3.8067e-01, - 2DIAGNOSTIC, 2, -4.574287595381e-01, 1.797693134862e+308, 1.4600e+00, 1.0046e-01, - 2DIAGNOSTIC, 3, -4.583595741904e-01, 1.797693134862e+308, 1.5623e+00, 1.0225e-01, - 2DIAGNOSTIC, 4, -4.588068092267e-01, 1.797693134862e+308, 1.6637e+00, 1.0141e-01, - 2DIAGNOSTIC, 5, -4.589684909342e-01, 1.797693134862e+308, 1.7701e+00, 1.0636e-01, - 2DIAGNOSTIC, 6, -4.591450233656e-01, 1.797693134862e+308, 1.8826e+00, 1.1256e-01, - 2DIAGNOSTIC, 7, -4.591832348045e-01, 1.797693134862e+308, 1.9962e+00, 1.1361e-01, - 2DIAGNOSTIC, 8, -4.592107688033e-01, 1.797693134862e+308, 2.1236e+00, 1.2734e-01, - 2DIAGNOSTIC, 9, -4.592523062624e-01, 1.797693134862e+308, 2.2392e+00, 1.1559e-01, - 2DIAGNOSTIC, 10, -4.593235248478e-01, 3.324523044450e-04, 2.3388e+00, 9.9599e-02, - 2DIAGNOSTIC, 11, -4.593364943723e-01, 1.821387359534e-04, 2.4532e+00, 1.1449e-01, - 2DIAGNOSTIC, 12, -4.593464155031e-01, 9.318602433396e-05, 2.5666e+00, 1.1334e-01, - 2DIAGNOSTIC, 13, -4.593489444760e-01, 5.387062410540e-05, 2.6667e+00, 1.0014e-01, - 2DIAGNOSTIC, 14, -4.593543889710e-01, 3.541779883059e-05, 2.7796e+00, 1.1283e-01, - 2DIAGNOSTIC, 15, -4.593611124546e-01, 2.312831629894e-05, 2.9354e+00, 1.5589e-01, - 2DIAGNOSTIC, 16, -4.593601279608e-01, 1.721890360216e-05, 3.0200e+00, 8.4561e-02, - 2DIAGNOSTIC, 17, -4.593606257661e-01, 1.204445835452e-05, 3.1152e+00, 9.5170e-02, - 2DIAGNOSTIC, 18, -4.593619937862e-01, 7.495479976131e-06, 3.4037e+00, 2.8852e-01, - 2DIAGNOSTIC, 19, -4.593619937836e-01, 4.186967474146e-06, 3.6781e+00, 2.7435e-01, - 2DIAGNOSTIC, 20, -4.593619937836e-01, 3.171421651398e-06, 3.8139e+00, 1.3584e-01, - 2DIAGNOSTIC, 21, -4.593619937836e-01, 2.483410742722e-06, 3.9271e+00, 1.1323e-01, - 2DIAGNOSTIC, 22, -4.593619937836e-01, 2.049504057182e-06, 4.0711e+00, 1.4398e-01, - 2DIAGNOSTIC, 23, -4.593619937836e-01, 1.661939470217e-06, 4.1866e+00, 1.1546e-01, - 2DIAGNOSTIC, 24, -4.593619937836e-01, 1.415893350482e-06, 4.3005e+00, 1.1396e-01, - 2DIAGNOSTIC, 25, -4.593619937836e-01, 1.349039156544e-06, 4.4144e+00, 1.1382e-01, - 2DIAGNOSTIC, 26, -4.593619937836e-01, 1.256812345196e-06, 4.5308e+00, 1.1646e-01, - 2DIAGNOSTIC, 27, -4.593619937836e-01, 1.178867734590e-06, 4.6450e+00, 1.1416e-01, - 2DIAGNOSTIC, 28, -4.593619937836e-01, 1.136740477012e-06, 4.7871e+00, 1.4210e-01, - 2DIAGNOSTIC, 29, -4.593619937836e-01, 1.097520150019e-06, 4.9174e+00, 1.3034e-01, - 2DIAGNOSTIC, 30, -4.593619937836e-01, 1.060915954518e-06, 5.0300e+00, 1.1263e-01, - 2DIAGNOSTIC, 31, -4.593619937836e-01, 1.026674581260e-06, 5.1591e+00, 1.2905e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.958195319795e-01, 1.797693134862e+308, 6.4194e+00, 1.2603e+00, - 2DIAGNOSTIC, 2, -3.960574176818e-01, 1.797693134862e+308, 7.0264e+00, 6.0698e-01, - 2DIAGNOSTIC, 3, -3.962129316852e-01, 1.797693134862e+308, 7.6179e+00, 5.9147e-01, - 2DIAGNOSTIC, 4, -3.964842544266e-01, 1.797693134862e+308, 8.5008e+00, 8.8295e-01, - 2DIAGNOSTIC, 5, -3.965125233966e-01, 1.797693134862e+308, 9.3296e+00, 8.2878e-01, - 2DIAGNOSTIC, 6, -3.965124593277e-01, 1.797693134862e+308, 1.0009e+01, 6.7951e-01, - 2DIAGNOSTIC, 7, -3.965132617771e-01, 1.797693134862e+308, 1.0893e+01, 8.8366e-01, - 2DIAGNOSTIC, 8, -3.965130102186e-01, 1.797693134862e+308, 1.1630e+01, 7.3763e-01, - 2DIAGNOSTIC, 9, -3.965129313926e-01, 1.797693134862e+308, 1.2232e+01, 6.0144e-01, - 2DIAGNOSTIC, 10, -3.965125966551e-01, 9.748977446936e-05, 1.2900e+01, 6.6791e-01, - 2DIAGNOSTIC, 11, -3.965126111337e-01, 5.096245463206e-05, 1.3570e+01, 6.7053e-01, - 2DIAGNOSTIC, 12, -3.965126039698e-01, 2.205075205677e-05, 1.4549e+01, 9.7893e-01, - 2DIAGNOSTIC, 13, -3.965126171410e-01, 4.003813210265e-06, 1.5215e+01, 6.6605e-01, - 2DIAGNOSTIC, 14, -3.965124856479e-01, 2.241837802341e-06, 1.5882e+01, 6.6677e-01, - 2DIAGNOSTIC, 15, -3.965123522992e-01, 2.063284765708e-06, 1.6560e+01, 6.7794e-01, - 2DIAGNOSTIC, 16, -3.965122190805e-01, 1.902457158434e-06, 1.7138e+01, 5.7779e-01, - 2DIAGNOSTIC, 17, -3.965120954470e-01, 1.797148000700e-06, 1.7673e+01, 5.3547e-01, - 2DIAGNOSTIC, 18, -3.965119878880e-01, 1.696056179223e-06, 1.8259e+01, 5.8594e-01, - 2DIAGNOSTIC, 19, -3.965120550346e-01, 1.612237965937e-06, 1.8867e+01, 6.0793e-01, - 2DIAGNOSTIC, 20, -3.965123153330e-01, 1.539841563390e-06, 1.9553e+01, 6.8621e-01, - 2DIAGNOSTIC, 21, -3.965123025183e-01, 1.478906941632e-06, 2.0250e+01, 6.9622e-01, - 2DIAGNOSTIC, 22, -3.965124006081e-01, 1.429960270603e-06, 2.0853e+01, 6.0319e-01, - 2DIAGNOSTIC, 23, -3.965124185870e-01, 1.387858955773e-06, 2.1462e+01, 6.0884e-01, - 2DIAGNOSTIC, 24, -3.965125503276e-01, 1.348811735885e-06, 2.2068e+01, 6.0593e-01, - 2DIAGNOSTIC, 25, -3.965127554812e-01, 1.312598452222e-06, 2.2659e+01, 5.9154e-01, - 2DIAGNOSTIC, 26, -3.965125123986e-01, 1.264983892690e-06, 2.3361e+01, 7.0188e-01, - 2DIAGNOSTIC, 27, -3.965126493887e-01, 1.217835314947e-06, 2.4106e+01, 7.4541e-01, - 2DIAGNOSTIC, 28, -3.965124166480e-01, 1.161520569622e-06, 2.4754e+01, 6.4811e-01, - 2DIAGNOSTIC, 29, -3.965123235244e-01, 1.105941468633e-06, 2.5293e+01, 5.3837e-01, - 2DIAGNOSTIC, 30, -3.965122669825e-01, 1.058116274676e-06, 2.5983e+01, 6.9066e-01, - 2DIAGNOSTIC, 31, -3.965123747072e-01, 1.015772024236e-06, 2.6656e+01, 6.7266e-01, - Elapsed time (stage 1): 2.7012e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.125890475280e-01, 1.797693134862e+308, 2.4536e-01, 2.4536e-01, - 1DIAGNOSTIC, 2, -9.215558111093e-01, 1.797693134862e+308, 3.4062e-01, 9.5262e-02, - 1DIAGNOSTIC, 3, -9.294090952409e-01, 1.797693134862e+308, 4.3799e-01, 9.7371e-02, - 1DIAGNOSTIC, 4, -9.353914090416e-01, 1.797693134862e+308, 5.3688e-01, 9.8887e-02, - 1DIAGNOSTIC, 5, -9.405213522976e-01, 1.797693134862e+308, 6.3934e-01, 1.0246e-01, - 1DIAGNOSTIC, 6, -9.445062713781e-01, 1.797693134862e+308, 7.3947e-01, 1.0012e-01, - 1DIAGNOSTIC, 7, -9.476820673593e-01, 1.797693134862e+308, 8.3989e-01, 1.0042e-01, - 1DIAGNOSTIC, 8, -9.505129371785e-01, 1.797693134862e+308, 9.3526e-01, 9.5370e-02, - 1DIAGNOSTIC, 9, -9.529675873318e-01, 1.797693134862e+308, 1.0305e+00, 9.5273e-02, - 1DIAGNOSTIC, 10, -9.549504057321e-01, 2.757978119659e-03, 1.1267e+00, 9.6127e-02, - 1DIAGNOSTIC, 11, -9.564261337156e-01, 2.055209133278e-03, 1.2241e+00, 9.7419e-02, - 1DIAGNOSTIC, 12, -9.576160287668e-01, 1.539647972529e-03, 1.3218e+00, 9.7710e-02, - 1DIAGNOSTIC, 13, -9.584584032653e-01, 1.165229120478e-03, 1.4195e+00, 9.7664e-02, - 1DIAGNOSTIC, 14, -9.590836614529e-01, 8.796193590795e-04, 1.5152e+00, 9.5783e-02, - 1DIAGNOSTIC, 15, -9.586107215932e-01, 6.446588613328e-04, 1.6149e+00, 9.9630e-02, - 1DIAGNOSTIC, 16, -9.592048521065e-01, 4.661770280536e-04, 1.7193e+00, 1.0442e-01, - 1DIAGNOSTIC, 17, -9.587495710964e-01, 3.132363112115e-04, 1.8260e+00, 1.0673e-01, - 1DIAGNOSTIC, 18, -9.592585423487e-01, 2.038735663596e-04, 1.9305e+00, 1.0452e-01, - 1DIAGNOSTIC, 19, -9.587509562846e-01, 1.174982217204e-04, 2.0310e+00, 1.0048e-01, - 1DIAGNOSTIC, 20, -9.592109772580e-01, 6.571919388822e-05, 2.1328e+00, 1.0179e-01, - 1DIAGNOSTIC, 21, -9.586958196316e-01, 2.620396565552e-05, 2.2310e+00, 9.8237e-02, - 1DIAGNOSTIC, 22, -9.591355600383e-01, 1.006044038858e-05, 2.3297e+00, 9.8658e-02, - 1DIAGNOSTIC, 23, -9.586348234451e-01, -1.419298469481e-06, 2.4376e+00, 1.0785e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.208132509392e-01, 1.797693134862e+308, 3.3051e+00, 8.6749e-01, - 1DIAGNOSTIC, 2, -9.248323464867e-01, 1.797693134862e+308, 3.9736e+00, 6.6856e-01, - 1DIAGNOSTIC, 3, -9.287796686634e-01, 1.797693134862e+308, 4.6445e+00, 6.7090e-01, - 1DIAGNOSTIC, 4, -9.322001746549e-01, 1.797693134862e+308, 5.3048e+00, 6.6028e-01, - 1DIAGNOSTIC, 5, -9.345500251720e-01, 1.797693134862e+308, 5.9640e+00, 6.5922e-01, - 1DIAGNOSTIC, 6, -9.364802723338e-01, 1.797693134862e+308, 6.6043e+00, 6.4024e-01, - 1DIAGNOSTIC, 7, -9.380961909131e-01, 1.797693134862e+308, 7.2553e+00, 6.5110e-01, - 1DIAGNOSTIC, 8, -9.393890139753e-01, 1.797693134862e+308, 7.9052e+00, 6.4989e-01, - 1DIAGNOSTIC, 9, -9.404257291465e-01, 1.797693134862e+308, 8.5439e+00, 6.3863e-01, - 1DIAGNOSTIC, 10, -9.413562914079e-01, 1.363394658497e-03, 9.2060e+00, 6.6217e-01, - 1DIAGNOSTIC, 11, -9.421913622479e-01, 1.016168155086e-03, 9.8732e+00, 6.6718e-01, - 1DIAGNOSTIC, 12, -9.429769713642e-01, 7.563572817891e-04, 1.0548e+01, 6.7529e-01, - 1DIAGNOSTIC, 13, -9.437056270966e-01, 5.764537870967e-04, 1.1199e+01, 6.5084e-01, - 1DIAGNOSTIC, 14, -9.443921465023e-01, 4.584658281126e-04, 1.1842e+01, 6.4286e-01, - 1DIAGNOSTIC, 15, -9.450504927721e-01, 3.748053771358e-04, 1.2500e+01, 6.5814e-01, - 1DIAGNOSTIC, 16, -9.456760617511e-01, 3.153152663788e-04, 1.3162e+01, 6.6157e-01, - 1DIAGNOSTIC, 17, -9.462686595435e-01, 2.729161740557e-04, 1.3809e+01, 6.4674e-01, - 1DIAGNOSTIC, 18, -9.468386169567e-01, 2.412113231295e-04, 1.4442e+01, 6.3366e-01, - 1DIAGNOSTIC, 19, -9.473786997069e-01, 2.154950015445e-04, 1.5106e+01, 6.6409e-01, - 1DIAGNOSTIC, 20, -9.478799275873e-01, 1.939000650237e-04, 1.5756e+01, 6.4948e-01, - 1DIAGNOSTIC, 21, -9.483527989004e-01, 1.750673579377e-04, 1.6416e+01, 6.6029e-01, - 1DIAGNOSTIC, 22, -9.487964328952e-01, 1.584431602729e-04, 1.7091e+01, 6.7462e-01, - 1DIAGNOSTIC, 23, -9.492238975134e-01, 1.435920638742e-04, 1.7740e+01, 6.4947e-01, - 1DIAGNOSTIC, 24, -9.496198276254e-01, 1.301080198836e-04, 1.8385e+01, 6.4458e-01, - 1DIAGNOSTIC, 25, -9.500065815732e-01, 1.180897333457e-04, 1.9019e+01, 6.3455e-01, - 1DIAGNOSTIC, 26, -9.503674342034e-01, 1.073286765408e-04, 1.9675e+01, 6.5520e-01, - 1DIAGNOSTIC, 27, -9.507003161168e-01, 9.759013557320e-05, 2.0329e+01, 6.5485e-01, - 1DIAGNOSTIC, 28, -9.510069998883e-01, 8.878632715521e-05, 2.1003e+01, 6.7383e-01, - 1DIAGNOSTIC, 29, -9.512926854347e-01, 8.079984917226e-05, 2.1664e+01, 6.6047e-01, - 1DIAGNOSTIC, 30, -9.515574841233e-01, 7.341528900646e-05, 2.2333e+01, 6.6926e-01, - 1DIAGNOSTIC, 31, -9.518008744981e-01, 6.653818265785e-05, 2.3004e+01, 6.7126e-01, - 1DIAGNOSTIC, 32, -9.520187707505e-01, 6.003656223281e-05, 2.3668e+01, 6.6406e-01, - 1DIAGNOSTIC, 33, -9.522295319722e-01, 5.409139048852e-05, 2.4347e+01, 6.7865e-01, - 1DIAGNOSTIC, 34, -9.524254043492e-01, 4.862855769223e-05, 2.5020e+01, 6.7352e-01, - 1DIAGNOSTIC, 35, -9.526078026846e-01, 4.378177841514e-05, 2.5695e+01, 6.7404e-01, - 1DIAGNOSTIC, 36, -9.527784610202e-01, 3.951875961952e-05, 2.6355e+01, 6.6043e-01, - 1DIAGNOSTIC, 37, -9.529240133805e-01, 3.565433725083e-05, 2.7004e+01, 6.4867e-01, - 1DIAGNOSTIC, 38, -9.530721306523e-01, 3.224017139757e-05, 2.7644e+01, 6.3997e-01, - 1DIAGNOSTIC, 39, -9.532122106310e-01, 2.925028151993e-05, 2.8286e+01, 6.4230e-01, - 1DIAGNOSTIC, 40, -9.533425339294e-01, 2.663070771172e-05, 2.8931e+01, 6.4551e-01, - 1DIAGNOSTIC, 41, -9.534626912882e-01, 2.430940535781e-05, 2.9601e+01, 6.6946e-01, - 1DIAGNOSTIC, 42, -9.535771274442e-01, 2.220286659946e-05, 3.0237e+01, 6.3618e-01, - 1DIAGNOSTIC, 43, -9.536851163885e-01, 2.034685617580e-05, 3.0895e+01, 6.5799e-01, - 1DIAGNOSTIC, 44, -9.537874905636e-01, 1.871148784718e-05, 3.1577e+01, 6.8153e-01, - 1DIAGNOSTIC, 45, -9.538835193030e-01, 1.726348366985e-05, 3.2264e+01, 6.8731e-01, - 1DIAGNOSTIC, 46, -9.539745027869e-01, 1.598501715500e-05, 3.2937e+01, 6.7359e-01, - 1DIAGNOSTIC, 47, -9.540608698875e-01, 1.476026667094e-05, 3.3620e+01, 6.8228e-01, - 1DIAGNOSTIC, 48, -9.541418756536e-01, 1.365325256274e-05, 3.4297e+01, 6.7689e-01, - 1DIAGNOSTIC, 49, -9.542161809386e-01, 1.264418688764e-05, 3.4966e+01, 6.6939e-01, - 1DIAGNOSTIC, 50, -9.542889000006e-01, 1.173078522684e-05, 3.5629e+01, 6.6318e-01, - 1DIAGNOSTIC, 51, -9.543564886298e-01, 1.088053987631e-05, 3.6302e+01, 6.7268e-01, - 1DIAGNOSTIC, 52, -9.544168576292e-01, 1.007532265909e-05, 3.6970e+01, 6.6820e-01, - 1DIAGNOSTIC, 53, -9.544765469163e-01, 9.330715859214e-06, 3.7629e+01, 6.5939e-01, - 1DIAGNOSTIC, 54, -9.545280675533e-01, 8.620068221957e-06, 3.8285e+01, 6.5507e-01, - 1DIAGNOSTIC, 55, -9.545753935750e-01, 7.936566910460e-06, 3.8970e+01, 6.8544e-01, - 1DIAGNOSTIC, 56, -9.546206544318e-01, 7.291649605001e-06, 3.9636e+01, 6.6599e-01, - 1DIAGNOSTIC, 57, -9.546630006436e-01, 6.692268853355e-06, 4.0297e+01, 6.6142e-01, - 1DIAGNOSTIC, 58, -9.546961568392e-01, 6.106854031334e-06, 4.0981e+01, 6.8386e-01, - 1DIAGNOSTIC, 59, -9.547315916453e-01, 5.558441817228e-06, 4.1652e+01, 6.7126e-01, - 1DIAGNOSTIC, 60, -9.547661472794e-01, 5.075254062431e-06, 4.2337e+01, 6.8442e-01, - 1DIAGNOSTIC, 61, -9.547968933613e-01, 4.647807488042e-06, 4.3019e+01, 6.8234e-01, - 1DIAGNOSTIC, 62, -9.548250869850e-01, 4.259622899898e-06, 4.3702e+01, 6.8225e-01, - 1DIAGNOSTIC, 63, -9.548512618096e-01, 3.927611815325e-06, 4.4374e+01, 6.7249e-01, - 1DIAGNOSTIC, 64, -9.548755264485e-01, 3.627421706832e-06, 4.5048e+01, 6.7359e-01, - 1DIAGNOSTIC, 65, -9.548982080214e-01, 3.353376126371e-06, 4.5726e+01, 6.7824e-01, - 1DIAGNOSTIC, 66, -9.549183252916e-01, 3.104607859711e-06, 4.6367e+01, 6.4114e-01, - 1DIAGNOSTIC, 67, -9.549303054177e-01, 2.851255356030e-06, 4.7034e+01, 6.6714e-01, - 1DIAGNOSTIC, 68, -9.549472990950e-01, 2.595443241542e-06, 4.7703e+01, 6.6845e-01, - 1DIAGNOSTIC, 69, -9.549619372613e-01, 2.356237296806e-06, 4.8359e+01, 6.5628e-01, - 1DIAGNOSTIC, 70, -9.549782564172e-01, 2.156124971986e-06, 4.9037e+01, 6.7858e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.179950425459e-01, 1.797693134862e+308, 5.4660e+01, 5.6227e+00, - 1DIAGNOSTIC, 2, -9.207051364708e-01, 1.797693134862e+308, 5.9997e+01, 5.3368e+00, - 1DIAGNOSTIC, 3, -9.230345357126e-01, 1.797693134862e+308, 6.5349e+01, 5.3518e+00, - 1DIAGNOSTIC, 4, -9.252752308709e-01, 1.797693134862e+308, 7.0643e+01, 5.2938e+00, - 1DIAGNOSTIC, 5, -9.274928511051e-01, 1.797693134862e+308, 7.5970e+01, 5.3270e+00, - 1DIAGNOSTIC, 6, -9.296706160511e-01, 1.797693134862e+308, 8.1294e+01, 5.3243e+00, - 1DIAGNOSTIC, 7, -9.317248248094e-01, 1.797693134862e+308, 8.6616e+01, 5.3224e+00, - 1DIAGNOSTIC, 8, -9.334867673711e-01, 1.797693134862e+308, 9.1932e+01, 5.3154e+00, - 1DIAGNOSTIC, 9, -9.350037801363e-01, 1.797693134862e+308, 9.7271e+01, 5.3397e+00, - 1DIAGNOSTIC, 10, -9.363444631892e-01, 1.275601350778e-03, 1.0261e+02, 5.3386e+00, - 1DIAGNOSTIC, 11, -9.374338317867e-01, 1.068860815218e-03, 1.0801e+02, 5.4037e+00, - 1DIAGNOSTIC, 12, -9.384323328199e-01, 8.946595968473e-04, 1.1335e+02, 5.3385e+00, - 1DIAGNOSTIC, 13, -9.392480065068e-01, 7.399522122341e-04, 1.1872e+02, 5.3673e+00, - 1DIAGNOSTIC, 14, -9.400121001816e-01, 6.053237926539e-04, 1.2410e+02, 5.3766e+00, - 1DIAGNOSTIC, 15, -9.407045467147e-01, 4.921857564620e-04, 1.2948e+02, 5.3883e+00, - 1DIAGNOSTIC, 16, -9.413316324809e-01, 4.011150092387e-04, 1.3482e+02, 5.3394e+00, - 1DIAGNOSTIC, 17, -9.419052725607e-01, 3.306494995973e-04, 1.4020e+02, 5.3720e+00, - 1DIAGNOSTIC, 18, -9.424296187425e-01, 2.759286946687e-04, 1.4556e+02, 5.3604e+00, - 1DIAGNOSTIC, 19, -9.429167338270e-01, 2.333139752028e-04, 1.5091e+02, 5.3529e+00, - 1DIAGNOSTIC, 20, -9.433649027806e-01, 2.003657107716e-04, 1.5625e+02, 5.3436e+00, - 1DIAGNOSTIC, 21, -9.437738889805e-01, 1.734734058356e-04, 1.6163e+02, 5.3821e+00, - 1DIAGNOSTIC, 22, -9.441497994285e-01, 1.517713023498e-04, 1.6701e+02, 5.3725e+00, - 1DIAGNOSTIC, 23, -9.444978582438e-01, 1.330880303306e-04, 1.7236e+02, 5.3503e+00, - 1DIAGNOSTIC, 24, -9.448178233476e-01, 1.171766022880e-04, 1.7771e+02, 5.3490e+00, - 1DIAGNOSTIC, 25, -9.451180927249e-01, 1.035772431379e-04, 1.8309e+02, 5.3794e+00, - 1DIAGNOSTIC, 26, -9.453984949898e-01, 9.187281631139e-05, 1.8842e+02, 5.3348e+00, - 1DIAGNOSTIC, 27, -9.456516487459e-01, 8.167991983267e-05, 1.9378e+02, 5.3624e+00, - 1DIAGNOSTIC, 28, -9.458771719606e-01, 7.264949524347e-05, 1.9912e+02, 5.3403e+00, - 1DIAGNOSTIC, 29, -9.460744444319e-01, 6.456025395304e-05, 2.0448e+02, 5.3594e+00, - 1DIAGNOSTIC, 30, -9.462476379448e-01, 5.721493607204e-05, 2.0982e+02, 5.3355e+00, - 1DIAGNOSTIC, 31, -9.463994240728e-01, 5.044427789342e-05, 2.1519e+02, 5.3750e+00, - 1DIAGNOSTIC, 32, -9.465376436700e-01, 4.422380251370e-05, 2.2054e+02, 5.3507e+00, - 1DIAGNOSTIC, 33, -9.466565071103e-01, 3.851525461147e-05, 2.2590e+02, 5.3567e+00, - 1DIAGNOSTIC, 34, -9.467728309582e-01, 3.341931949705e-05, 2.3122e+02, 5.3223e+00, - 1DIAGNOSTIC, 35, -9.468827886980e-01, 2.903343601604e-05, 2.3662e+02, 5.3977e+00, - 1DIAGNOSTIC, 36, -9.469882187152e-01, 2.542123486688e-05, 2.4198e+02, 5.3604e+00, - 1DIAGNOSTIC, 37, -9.470886032480e-01, 2.252560384661e-05, 2.4735e+02, 5.3648e+00, - 1DIAGNOSTIC, 38, -9.471879214854e-01, 2.027531902620e-05, 2.5270e+02, 5.3506e+00, - 1DIAGNOSTIC, 39, -9.472837578905e-01, 1.853380635103e-05, 2.5810e+02, 5.4037e+00, - 1DIAGNOSTIC, 40, -9.473792761510e-01, 1.719644323216e-05, 2.6345e+02, 5.3543e+00, - 1DIAGNOSTIC, 41, -9.474718091662e-01, 1.613806205930e-05, 2.6884e+02, 5.3907e+00, - 1DIAGNOSTIC, 42, -9.475615037335e-01, 1.528525039940e-05, 2.7420e+02, 5.3565e+00, - 1DIAGNOSTIC, 43, -9.476526791784e-01, 1.454255852096e-05, 2.7957e+02, 5.3654e+00, - 1DIAGNOSTIC, 44, -9.477412386028e-01, 1.390369699813e-05, 2.8492e+02, 5.3514e+00, - 1DIAGNOSTIC, 45, -9.478320804271e-01, 1.336441014337e-05, 2.9028e+02, 5.3598e+00, - 1DIAGNOSTIC, 46, -9.479254123689e-01, 1.292703768791e-05, 2.9561e+02, 5.3338e+00, - 1DIAGNOSTIC, 47, -9.480191116501e-01, 1.256852613191e-05, 3.0100e+02, 5.3916e+00, - 1DIAGNOSTIC, 48, -9.481133128986e-01, 1.228880460236e-05, 3.0636e+02, 5.3600e+00, - 1DIAGNOSTIC, 49, -9.482067036512e-01, 1.205804357765e-05, 3.1173e+02, 5.3626e+00, - 1DIAGNOSTIC, 50, -9.482963100332e-01, 1.184688434353e-05, 3.1707e+02, 5.3489e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.180331883105e-01, 1.797693134862e+308, 3.6131e+02, 4.4239e+01, - 1DIAGNOSTIC, 2, -9.185399000789e-01, 1.797693134862e+308, 4.0454e+02, 4.3224e+01, - 1DIAGNOSTIC, 3, -9.193061212780e-01, 1.797693134862e+308, 4.4777e+02, 4.3229e+01, - 1DIAGNOSTIC, 4, -9.201403909805e-01, 1.797693134862e+308, 4.9115e+02, 4.3383e+01, - 1DIAGNOSTIC, 5, -9.209428132779e-01, 1.797693134862e+308, 5.3432e+02, 4.3165e+01, - 1DIAGNOSTIC, 6, -9.217394585652e-01, 1.797693134862e+308, 5.7756e+02, 4.3246e+01, - 1DIAGNOSTIC, 7, -9.225747231559e-01, 1.797693134862e+308, 6.2106e+02, 4.3498e+01, - 1DIAGNOSTIC, 8, -9.234137412838e-01, 1.797693134862e+308, 6.6429e+02, 4.3235e+01, - 1DIAGNOSTIC, 9, -9.242507409108e-01, 1.797693134862e+308, 7.0750e+02, 4.3204e+01, - 1DIAGNOSTIC, 10, -9.250760663131e-01, 5.023819841088e-04, 7.5076e+02, 4.3265e+01, - 1DIAGNOSTIC, 11, -9.258805781042e-01, 4.670172464798e-04, 7.9421e+02, 4.3451e+01, - 1DIAGNOSTIC, 12, -9.266927039900e-01, 4.293366138987e-04, 8.3773e+02, 4.3517e+01, - 1DIAGNOSTIC, 13, -9.275145678959e-01, 3.960577860567e-04, 8.8128e+02, 4.3546e+01, - 1DIAGNOSTIC, 14, -9.283012702154e-01, 3.669931328699e-04, 9.2456e+02, 4.3280e+01, - 1DIAGNOSTIC, 15, -9.289901951702e-01, 3.387448518737e-04, 9.6814e+02, 4.3585e+01, - 1DIAGNOSTIC, 16, -9.297483092259e-01, 3.127487087449e-04, 1.0116e+03, 4.3471e+01, - 1DIAGNOSTIC, 17, -9.304600549438e-01, 2.888261245749e-04, 1.0551e+03, 4.3456e+01, - 1DIAGNOSTIC, 18, -9.310050027739e-01, 2.643511453781e-04, 1.0985e+03, 4.3465e+01, - 1DIAGNOSTIC, 19, -9.314328134367e-01, 2.383637703409e-04, 1.1421e+03, 4.3519e+01, - 1DIAGNOSTIC, 20, -9.317841064673e-01, 2.108986064346e-04, 1.1855e+03, 4.3427e+01, - Elapsed time (stage 2): 1186 - - -Total elapsed time: 1236 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:24 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-T1map_to-fsnative_InverseWarped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:24 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:27 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:31 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:34 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:34 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19098 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:34 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:37 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:37 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19148 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:38 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/anat/sub-PNC010_ses-01_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:41 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19192 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:41 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 19197 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:52:41 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:22 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:24 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:24 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:25 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:26 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:28 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:28 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:29 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:30 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:32 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:32 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/surf/sub-PNC010_ses-01_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-01_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:33 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:42 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:53 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01/sub-PNC010_ses-01_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC010 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:53 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC010 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:53 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-01_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC010 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:54 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 20022 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:55 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:56 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc/sub-PNC010_ses-01_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/xfm/sub-PNC010_ses-01_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 20066 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:57 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:53:57 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC010_ses-01 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-01_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 70.183 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/logs/proc_func_19-03-2024-25438.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:54:53 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC010 01 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-01/QC/sub-PNC010_ses-01_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/27359_micapipe_proc-func_sub-PNC010_ses-01 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC010* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 70.233 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC010_ses-01 -========================reprocessing without filter=================== -sub-PNC010_ses-02 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC010 -ses 02 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC010 Session: ses-02 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC010 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC010 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:55:14 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:55:14 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-1_bold.nii.gz is 36.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:57:17 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:59:19 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 08:59:34 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.59 (mm) at sub-brick 2 -++ Max delta displ in automask = 0.52 (mm) at sub-brick 204 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:12:06 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:12:25 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-2_bold.nii.gz is 36.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:14:25 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:16:27 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-02/func/sub-PNC010_ses-02_task-rest_echo-3_bold.nii.gz is 36.000000 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:18:29 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.722 -2.637 2.126 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.4 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -1.025 -4.963 3.895 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.3 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:23:04 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983051776885986,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:23:31 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x5636fc0dca50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [108.102, 67.7529, -105.613] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5636fbf53730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5636fc0f3350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5636fc0e3600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.8093, 125.469, -122.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5636fc0e5e40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5636fc8eff50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x5636fc8ee270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [108.102, 67.7529, -105.613] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5636fc0e2640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5636fd41a1c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x5636fc8eda00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [75.8093, 125.469, -122.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x5636fc0e9390) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x5636fdc14300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.882080392968e-01, 1.797693134862e+308, 4.1859e-02, 4.1859e-02, - 2DIAGNOSTIC, 2, -6.896795416929e-01, 1.797693134862e+308, 4.3057e-02, 1.1981e-03, - 2DIAGNOSTIC, 3, -6.920556149683e-01, 1.797693134862e+308, 4.4339e-02, 1.2820e-03, - 2DIAGNOSTIC, 4, -6.961953458371e-01, 1.797693134862e+308, 4.5570e-02, 1.2310e-03, - 2DIAGNOSTIC, 5, -7.012181609811e-01, 1.797693134862e+308, 4.6795e-02, 1.2250e-03, - 2DIAGNOSTIC, 6, -7.288724929481e-01, 1.797693134862e+308, 4.8100e-02, 1.3051e-03, - 2DIAGNOSTIC, 7, -7.488733686947e-01, 1.797693134862e+308, 4.9606e-02, 1.5059e-03, - 2DIAGNOSTIC, 8, -8.003170123977e-01, 1.797693134862e+308, 5.1287e-02, 1.6809e-03, - 2DIAGNOSTIC, 9, -8.075551901281e-01, 1.797693134862e+308, 5.4133e-02, 2.8460e-03, - 2DIAGNOSTIC, 10, -8.095297995973e-01, 1.272177872140e-02, 5.5751e-02, 1.6179e-03, - 2DIAGNOSTIC, 11, -8.124381488270e-01, 1.228012393756e-02, 5.7265e-02, 1.5140e-03, - 2DIAGNOSTIC, 12, -8.148177761732e-01, 1.092866869990e-02, 5.8697e-02, 1.4319e-03, - 2DIAGNOSTIC, 13, -8.158970668682e-01, 8.904375225230e-03, 6.0159e-02, 1.4629e-03, - 2DIAGNOSTIC, 14, -8.163641646260e-01, 6.516581315424e-03, 6.1643e-02, 1.4832e-03, - 2DIAGNOSTIC, 15, -8.167608655193e-01, 4.018750174596e-03, 6.3059e-02, 1.4160e-03, - 2DIAGNOSTIC, 16, -8.176208159588e-01, 2.150843806981e-03, 6.4775e-02, 1.7169e-03, - 2DIAGNOSTIC, 17, -8.181711656793e-01, 7.353157452817e-04, 6.6231e-02, 1.4551e-03, - 2DIAGNOSTIC, 18, -8.174966505949e-01, 4.542803732051e-04, 6.8636e-02, 2.4059e-03, - 2DIAGNOSTIC, 19, -8.177609276303e-01, 3.084875883467e-04, 7.0073e-02, 1.4369e-03, - 2DIAGNOSTIC, 20, -8.179068983369e-01, 1.874256394829e-04, 7.1512e-02, 1.4391e-03, - 2DIAGNOSTIC, 21, -8.181420829106e-01, 1.145251031390e-04, 7.3203e-02, 1.6901e-03, - 2DIAGNOSTIC, 22, -8.182700588753e-01, 7.908753263476e-05, 7.4889e-02, 1.6861e-03, - 2DIAGNOSTIC, 23, -8.184534695517e-01, 5.983022011882e-05, 7.6874e-02, 1.9851e-03, - 2DIAGNOSTIC, 24, -8.188594621830e-01, 5.006942116418e-05, 7.8413e-02, 1.5390e-03, - 2DIAGNOSTIC, 25, -8.189726009205e-01, 4.335562268803e-05, 7.9918e-02, 1.5049e-03, - 2DIAGNOSTIC, 26, -8.191847045098e-01, 4.786232428525e-05, 8.1397e-02, 1.4789e-03, - 2DIAGNOSTIC, 27, -8.200460453771e-01, 6.681883962440e-05, 8.3099e-02, 1.7021e-03, - 2DIAGNOSTIC, 28, -8.203928166838e-01, 7.361783604652e-05, 8.7778e-02, 4.6792e-03, - 2DIAGNOSTIC, 29, -8.203933207177e-01, 7.634312919069e-05, 8.9770e-02, 1.9922e-03, - 2DIAGNOSTIC, 30, -8.203958419184e-01, 7.369823580634e-05, 9.1717e-02, 1.9472e-03, - 2DIAGNOSTIC, 31, -8.203996610679e-01, 6.717477486926e-05, 9.3540e-02, 1.8229e-03, - 2DIAGNOSTIC, 32, -8.204050571624e-01, 5.613987501331e-05, 9.5009e-02, 1.4689e-03, - 2DIAGNOSTIC, 33, -8.204118814113e-01, 4.246634439110e-05, 9.6488e-02, 1.4789e-03, - 2DIAGNOSTIC, 34, -8.204193068215e-01, 3.016794792796e-05, 9.7965e-02, 1.4770e-03, - 2DIAGNOSTIC, 35, -8.204264856252e-01, 1.715245410815e-05, 9.9404e-02, 1.4391e-03, - 2DIAGNOSTIC, 36, -8.204325509762e-01, 5.302192843636e-06, 1.0083e-01, 1.4250e-03, - 2DIAGNOSTIC, 37, -8.204409518145e-01, 1.987524466372e-06, 1.0225e-01, 1.4219e-03, - 2DIAGNOSTIC, 38, -8.204496560146e-01, 2.082386728094e-06, 1.0368e-01, 1.4279e-03, - 2DIAGNOSTIC, 39, -8.204605652985e-01, 2.158772214409e-06, 1.0600e-01, 2.3260e-03, - 2DIAGNOSTIC, 40, -8.204642946784e-01, 2.159543977680e-06, 1.0808e-01, 2.0750e-03, - 2DIAGNOSTIC, 41, -8.204643540983e-01, 2.066428187057e-06, 1.0991e-01, 1.8280e-03, - 2DIAGNOSTIC, 42, -8.204643708817e-01, 1.902857047268e-06, 1.1164e-01, 1.7350e-03, - 2DIAGNOSTIC, 43, -8.204643755329e-01, 1.694549625449e-06, 1.1330e-01, 1.6561e-03, - 2DIAGNOSTIC, 44, -8.204643769136e-01, 1.464704408358e-06, 1.1586e-01, 2.5570e-03, - 2DIAGNOSTIC, 45, -8.204643770656e-01, 1.232539462142e-06, 1.1884e-01, 2.9829e-03, - 2DIAGNOSTIC, 46, -8.204643770712e-01, 1.009108298793e-06, 1.2159e-01, 2.7542e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.776080163689e-01, 1.797693134862e+308, 1.6802e-01, 4.6423e-02, - 2DIAGNOSTIC, 2, -4.773782688268e-01, 1.797693134862e+308, 1.7067e-01, 2.6550e-03, - 2DIAGNOSTIC, 3, -4.779731782073e-01, 1.797693134862e+308, 1.7333e-01, 2.6622e-03, - 2DIAGNOSTIC, 4, -4.785486941766e-01, 1.797693134862e+308, 1.7587e-01, 2.5330e-03, - 2DIAGNOSTIC, 5, -4.798362993078e-01, 1.797693134862e+308, 1.7813e-01, 2.2590e-03, - 2DIAGNOSTIC, 6, -4.894036995038e-01, 1.797693134862e+308, 1.8056e-01, 2.4340e-03, - 2DIAGNOSTIC, 7, -4.956936259943e-01, 1.797693134862e+308, 1.8294e-01, 2.3830e-03, - 2DIAGNOSTIC, 8, -4.969496630805e-01, 1.797693134862e+308, 1.8501e-01, 2.0649e-03, - 2DIAGNOSTIC, 9, -5.003625479776e-01, 1.797693134862e+308, 1.8715e-01, 2.1400e-03, - 2DIAGNOSTIC, 10, -5.219442044249e-01, 5.072518398533e-03, 1.9010e-01, 2.9540e-03, - 2DIAGNOSTIC, 11, -5.234752681336e-01, 5.711698432154e-03, 1.9334e-01, 3.2411e-03, - 2DIAGNOSTIC, 12, -5.244562205730e-01, 5.770532535230e-03, 1.9583e-01, 2.4831e-03, - 2DIAGNOSTIC, 13, -5.251901641686e-01, 5.378488567323e-03, 1.9852e-01, 2.6979e-03, - 2DIAGNOSTIC, 14, -5.268035952691e-01, 4.649000578462e-03, 2.0096e-01, 2.4321e-03, - 2DIAGNOSTIC, 15, -5.307683707611e-01, 3.773469262061e-03, 2.0415e-01, 3.1989e-03, - 2DIAGNOSTIC, 16, -5.476470595337e-01, 3.583378384221e-03, 2.1060e-01, 6.4468e-03, - 2DIAGNOSTIC, 17, -5.489637520033e-01, 3.337099890672e-03, 2.1309e-01, 2.4920e-03, - 2DIAGNOSTIC, 18, -5.516715067760e-01, 2.947808442781e-03, 2.1557e-01, 2.4750e-03, - 2DIAGNOSTIC, 19, -5.543212910378e-01, 2.495186140213e-03, 2.1806e-01, 2.4941e-03, - 2DIAGNOSTIC, 20, -5.566700272843e-01, 2.516498864968e-03, 2.2080e-01, 2.7380e-03, - 2DIAGNOSTIC, 21, -5.581179422986e-01, 2.372472785898e-03, 2.2413e-01, 3.3319e-03, - 2DIAGNOSTIC, 22, -5.607914262346e-01, 2.112520034361e-03, 2.2744e-01, 3.3119e-03, - 2DIAGNOSTIC, 23, -5.743829896428e-01, 2.022730041364e-03, 2.3109e-01, 3.6500e-03, - 2DIAGNOSTIC, 24, -5.840742571781e-01, 2.000423926556e-03, 2.3384e-01, 2.7461e-03, - 2DIAGNOSTIC, 25, -5.853383556621e-01, 1.894242556518e-03, 2.3662e-01, 2.7781e-03, - 2DIAGNOSTIC, 26, -5.877849365779e-01, 2.025559729222e-03, 2.3902e-01, 2.3990e-03, - 2DIAGNOSTIC, 27, -5.893386664699e-01, 2.012842835007e-03, 2.4177e-01, 2.7499e-03, - 2DIAGNOSTIC, 28, -5.906589007222e-01, 1.883128091582e-03, 2.4416e-01, 2.3892e-03, - 2DIAGNOSTIC, 29, -5.968433523656e-01, 1.743692296350e-03, 2.4678e-01, 2.6200e-03, - 2DIAGNOSTIC, 30, -6.048905083170e-01, 1.633217532644e-03, 2.4974e-01, 2.9650e-03, - 2DIAGNOSTIC, 31, -6.066529764560e-01, 1.432288530108e-03, 2.5260e-01, 2.8639e-03, - 2DIAGNOSTIC, 32, -6.075131567680e-01, 1.165843391579e-03, 2.5483e-01, 2.2221e-03, - 2DIAGNOSTIC, 33, -6.088762315730e-01, 1.041895198582e-03, 2.5711e-01, 2.2860e-03, - 2DIAGNOSTIC, 34, -6.177667050828e-01, 1.109927576435e-03, 2.5998e-01, 2.8641e-03, - 2DIAGNOSTIC, 35, -6.213617679887e-01, 1.134192933597e-03, 2.6222e-01, 2.2430e-03, - 2DIAGNOSTIC, 36, -6.226954345614e-01, 1.104264394959e-03, 2.6531e-01, 3.0911e-03, - 2DIAGNOSTIC, 37, -6.238895622047e-01, 1.013768928217e-03, 2.6763e-01, 2.3160e-03, - 2DIAGNOSTIC, 38, -6.242806814385e-01, 8.546399292170e-04, 2.6984e-01, 2.2130e-03, - 2DIAGNOSTIC, 39, -6.249252377216e-01, 7.086524267100e-04, 2.7239e-01, 2.5489e-03, - 2DIAGNOSTIC, 40, -6.255490008281e-01, 6.126294320305e-04, 2.7494e-01, 2.5530e-03, - 2DIAGNOSTIC, 41, -6.257446154932e-01, 4.890579322110e-04, 2.7716e-01, 2.2161e-03, - 2DIAGNOSTIC, 42, -6.258049890700e-01, 3.380340789549e-04, 2.7940e-01, 2.2371e-03, - 2DIAGNOSTIC, 43, -6.261300925501e-01, 1.802766529683e-04, 2.8193e-01, 2.5320e-03, - 2DIAGNOSTIC, 44, -6.289354811107e-01, 1.463589803276e-04, 2.8504e-01, 3.1171e-03, - 2DIAGNOSTIC, 45, -6.293827123649e-01, 1.442057905257e-04, 2.8769e-01, 2.6450e-03, - 2DIAGNOSTIC, 46, -6.297622101632e-01, 1.471585414562e-04, 2.9051e-01, 2.8160e-03, - 2DIAGNOSTIC, 47, -6.297305223462e-01, 1.488343162082e-04, 2.9383e-01, 3.3228e-03, - 2DIAGNOSTIC, 48, -6.298969336720e-01, 1.419619966544e-04, 2.9665e-01, 2.8260e-03, - 2DIAGNOSTIC, 49, -6.308416726575e-01, 1.374003845681e-04, 2.9922e-01, 2.5640e-03, - 2DIAGNOSTIC, 50, -6.311388170927e-01, 1.286753884095e-04, 3.0241e-01, 3.1960e-03, - 2DIAGNOSTIC, 51, -6.312308504608e-01, 1.113206766893e-04, 3.0466e-01, 2.2409e-03, - 2DIAGNOSTIC, 52, -6.312174813930e-01, 8.499855692458e-05, 3.0690e-01, 2.2440e-03, - 2DIAGNOSTIC, 53, -6.313447707825e-01, 5.526533276409e-05, 3.1060e-01, 3.7029e-03, - 2DIAGNOSTIC, 54, -6.313476680332e-01, 4.689554613477e-05, 3.1282e-01, 2.2168e-03, - 2DIAGNOSTIC, 55, -6.313650865414e-01, 3.843928467818e-05, 3.1509e-01, 2.2759e-03, - 2DIAGNOSTIC, 56, -6.314493171627e-01, 3.090950792610e-05, 3.1737e-01, 2.2800e-03, - 2DIAGNOSTIC, 57, -6.314523131516e-01, 2.058973721158e-05, 3.1989e-01, 2.5170e-03, - 2DIAGNOSTIC, 58, -6.314541510156e-01, 9.967568358145e-06, 3.2216e-01, 2.2719e-03, - 2DIAGNOSTIC, 59, -6.314636033601e-01, 6.693310059949e-06, 3.2553e-01, 3.3622e-03, - 2DIAGNOSTIC, 60, -6.314699959180e-01, 5.410060480812e-06, 3.2893e-01, 3.4051e-03, - 2DIAGNOSTIC, 61, -6.314878653119e-01, 4.590387503219e-06, 3.3208e-01, 3.1469e-03, - 2DIAGNOSTIC, 62, -6.312897450132e-01, 1.719241071924e-06, 3.3465e-01, 2.5730e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.429586225625e-01, 1.797693134862e+308, 4.0194e-01, 6.7288e-02, - 2DIAGNOSTIC, 2, -4.440337990593e-01, 1.797693134862e+308, 4.1246e-01, 1.0520e-02, - 2DIAGNOSTIC, 3, -4.454658664543e-01, 1.797693134862e+308, 4.2278e-01, 1.0326e-02, - 2DIAGNOSTIC, 4, -4.472590191210e-01, 1.797693134862e+308, 4.3442e-01, 1.1639e-02, - 2DIAGNOSTIC, 5, -4.499683945352e-01, 1.797693134862e+308, 4.4543e-01, 1.1005e-02, - 2DIAGNOSTIC, 6, -4.568422129715e-01, 1.797693134862e+308, 4.5722e-01, 1.1793e-02, - 2DIAGNOSTIC, 7, -4.693974105533e-01, 1.797693134862e+308, 4.6868e-01, 1.1459e-02, - 2DIAGNOSTIC, 8, -4.714196601885e-01, 1.797693134862e+308, 4.8025e-01, 1.1570e-02, - 2DIAGNOSTIC, 9, -4.728055760144e-01, 1.797693134862e+308, 4.9537e-01, 1.5123e-02, - 2DIAGNOSTIC, 10, -4.735830068436e-01, 5.313182298974e-03, 5.0708e-01, 1.1709e-02, - 2DIAGNOSTIC, 11, -4.737754443334e-01, 4.751318047271e-03, 5.1753e-01, 1.0451e-02, - 2DIAGNOSTIC, 12, -4.745811960143e-01, 3.947531989238e-03, 5.3167e-01, 1.4141e-02, - 2DIAGNOSTIC, 13, -4.753096677614e-01, 3.017617612677e-03, 5.4334e-01, 1.1664e-02, - 2DIAGNOSTIC, 14, -4.766831131652e-01, 2.096984597242e-03, 5.5994e-01, 1.6601e-02, - 2DIAGNOSTIC, 15, -4.767123601625e-01, 1.221751771207e-03, 5.7169e-01, 1.1755e-02, - 2DIAGNOSTIC, 16, -4.778391910049e-01, 6.419956738258e-04, 5.8647e-01, 1.4780e-02, - 2DIAGNOSTIC, 17, -4.804458997452e-01, 6.163310439927e-04, 5.9981e-01, 1.3337e-02, - 2DIAGNOSTIC, 18, -4.812885895555e-01, 6.302735974218e-04, 6.1317e-01, 1.3354e-02, - 2DIAGNOSTIC, 19, -4.813151698884e-01, 6.295842145213e-04, 6.2646e-01, 1.3291e-02, - 2DIAGNOSTIC, 20, -4.814803034303e-01, 6.011067764667e-04, 6.3810e-01, 1.1644e-02, - 2DIAGNOSTIC, 21, -4.816683986179e-01, 5.303046330896e-04, 6.5271e-01, 1.4606e-02, - 2DIAGNOSTIC, 22, -4.816930058314e-01, 4.380807441070e-04, 6.6401e-01, 1.1299e-02, - 2DIAGNOSTIC, 23, -4.817047355212e-01, 3.316994585418e-04, 6.7532e-01, 1.1314e-02, - 2DIAGNOSTIC, 24, -4.816996942735e-01, 2.393177897127e-04, 6.8587e-01, 1.0555e-02, - 2DIAGNOSTIC, 25, -4.816907179989e-01, 1.329107827109e-04, 6.9706e-01, 1.1189e-02, - 2DIAGNOSTIC, 26, -4.816769649192e-01, 4.677753822208e-05, 7.0992e-01, 1.2855e-02, - 2DIAGNOSTIC, 27, -4.816795411454e-01, 2.066449699663e-05, 7.2048e-01, 1.0558e-02, - 2DIAGNOSTIC, 28, -4.816836839058e-01, 1.292454598463e-05, 7.3176e-01, 1.1284e-02, - 2DIAGNOSTIC, 29, -4.817018294163e-01, 5.499872241910e-06, 7.4226e-01, 1.0502e-02, - 2DIAGNOSTIC, 30, -4.817524784522e-01, 2.391479857124e-06, 7.5579e-01, 1.3529e-02, - 2DIAGNOSTIC, 31, -4.817648025291e-01, 3.221071446201e-06, 7.7018e-01, 1.4388e-02, - 2DIAGNOSTIC, 32, -4.817604495820e-01, 4.172275880759e-06, 7.8192e-01, 1.1743e-02, - 2DIAGNOSTIC, 33, -4.817557305786e-01, 4.906741984688e-06, 7.9486e-01, 1.2937e-02, - 2DIAGNOSTIC, 34, -4.817506922407e-01, 5.045132647680e-06, 8.0539e-01, 1.0532e-02, - 2DIAGNOSTIC, 35, -4.817463235189e-01, 4.550100921957e-06, 8.1585e-01, 1.0460e-02, - 2DIAGNOSTIC, 36, -4.817551436071e-01, 3.654157994387e-06, 8.2699e-01, 1.1136e-02, - 2DIAGNOSTIC, 37, -4.817659122975e-01, 2.770914446504e-06, 8.4056e-01, 1.3577e-02, - 2DIAGNOSTIC, 38, -4.817789073459e-01, 2.026585560477e-06, 8.5374e-01, 1.3173e-02, - 2DIAGNOSTIC, 39, -4.817702061108e-01, 1.333198006093e-06, 8.6547e-01, 1.1727e-02, - 2DIAGNOSTIC, 40, -4.817760176739e-01, 1.474304245023e-06, 8.7825e-01, 1.2780e-02, - 2DIAGNOSTIC, 41, -4.817857309658e-01, 1.862872863783e-06, 8.8822e-01, 9.9721e-03, - 2DIAGNOSTIC, 42, -4.817981027563e-01, 2.235525019788e-06, 9.0011e-01, 1.1892e-02, - 2DIAGNOSTIC, 43, -4.818027717105e-01, 2.447903272289e-06, 9.1015e-01, 1.0039e-02, - 2DIAGNOSTIC, 44, -4.818067046181e-01, 2.482150868351e-06, 9.2286e-01, 1.2708e-02, - 2DIAGNOSTIC, 45, -4.818041166198e-01, 2.256948817867e-06, 9.3423e-01, 1.1372e-02, - 2DIAGNOSTIC, 46, -4.818011510450e-01, 1.966065485099e-06, 9.4435e-01, 1.0118e-02, - 2DIAGNOSTIC, 47, -4.819826515672e-01, 4.003585806441e-06, 9.5573e-01, 1.1383e-02, - 2DIAGNOSTIC, 48, -4.820605365748e-01, 6.706751515623e-06, 9.6691e-01, 1.1179e-02, - 2DIAGNOSTIC, 49, -4.820888464025e-01, 8.958774890155e-06, 9.7835e-01, 1.1441e-02, - 2DIAGNOSTIC, 50, -4.821180466825e-01, 1.077867357890e-05, 1.0132e+00, 3.4807e-02, - 2DIAGNOSTIC, 51, -4.821180465309e-01, 1.166737103791e-05, 1.0480e+00, 3.4883e-02, - 2DIAGNOSTIC, 52, -4.821180465309e-01, 1.157444045845e-05, 1.0650e+00, 1.6997e-02, - 2DIAGNOSTIC, 53, -4.821180465309e-01, 1.046599137808e-05, 1.0765e+00, 1.1416e-02, - 2DIAGNOSTIC, 54, -4.821180465309e-01, 8.519638037205e-06, 1.0894e+00, 1.2997e-02, - 2DIAGNOSTIC, 55, -4.821180465309e-01, 5.887932498297e-06, 1.1023e+00, 1.2862e-02, - 2DIAGNOSTIC, 56, -4.821180465309e-01, 2.768688203068e-06, 1.1152e+00, 1.2851e-02, - 2DIAGNOSTIC, 57, -4.821180465309e-01, 1.432226912634e-06, 1.1267e+00, 1.1569e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.998694329819e-01, 1.797693134862e+308, 1.2953e+00, 1.6852e-01, - Elapsed time (stage 0): 1.3229e+00 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -9.445998796837e-01, 1.797693134862e+308, 4.0252e-02, 4.0252e-02, - 2DIAGNOSTIC, 2, -9.463545998202e-01, 1.797693134862e+308, 4.1764e-02, 1.5121e-03, - 2DIAGNOSTIC, 3, -9.474838858366e-01, 1.797693134862e+308, 4.3244e-02, 1.4799e-03, - 2DIAGNOSTIC, 4, -9.469018281264e-01, 1.797693134862e+308, 4.4475e-02, 1.2310e-03, - 2DIAGNOSTIC, 5, -9.467431145818e-01, 1.797693134862e+308, 4.5910e-02, 1.4350e-03, - 2DIAGNOSTIC, 6, -9.453410894745e-01, 1.797693134862e+308, 4.7048e-02, 1.1382e-03, - 2DIAGNOSTIC, 7, -9.476603346895e-01, 1.797693134862e+308, 4.8302e-02, 1.2538e-03, - 2DIAGNOSTIC, 8, -9.541276513006e-01, 1.797693134862e+308, 4.9699e-02, 1.3969e-03, - 2DIAGNOSTIC, 9, -9.562797916084e-01, 1.797693134862e+308, 5.1573e-02, 1.8742e-03, - 2DIAGNOSTIC, 10, -9.563874908375e-01, 7.590957716081e-04, 5.3170e-02, 1.5969e-03, - 2DIAGNOSTIC, 11, -9.568316177817e-01, 7.827415633509e-04, 5.4481e-02, 1.3111e-03, - 2DIAGNOSTIC, 12, -9.561619598040e-01, 7.577162352442e-04, 5.5990e-02, 1.5090e-03, - 2DIAGNOSTIC, 13, -9.552521864693e-01, 6.710405669241e-04, 5.7504e-02, 1.5140e-03, - 2DIAGNOSTIC, 14, -9.558616636643e-01, 5.364346044837e-04, 5.8832e-02, 1.3280e-03, - 2DIAGNOSTIC, 15, -9.555449642490e-01, 3.640964332063e-04, 6.0456e-02, 1.6241e-03, - 2DIAGNOSTIC, 16, -9.567797915764e-01, 1.778658714876e-04, 6.1870e-02, 1.4141e-03, - 2DIAGNOSTIC, 17, -9.576266468398e-01, 5.000709737300e-05, 6.3416e-02, 1.5459e-03, - 2DIAGNOSTIC, 18, -9.590699993359e-01, 6.226267179201e-05, 6.4942e-02, 1.5261e-03, - 2DIAGNOSTIC, 19, -9.586761730850e-01, 9.482565835940e-05, 6.6279e-02, 1.3371e-03, - 2DIAGNOSTIC, 20, -9.589408069920e-01, 1.210877035637e-04, 6.7604e-02, 1.3251e-03, - 2DIAGNOSTIC, 21, -9.618077407370e-01, 1.807729498221e-04, 6.8941e-02, 1.3371e-03, - 2DIAGNOSTIC, 22, -9.668760642285e-01, 2.766567791739e-04, 7.0486e-02, 1.5450e-03, - 2DIAGNOSTIC, 23, -9.712491067384e-01, 3.813857147057e-04, 7.2028e-02, 1.5421e-03, - 2DIAGNOSTIC, 24, -9.750944892788e-01, 4.970286216645e-04, 7.3349e-02, 1.3208e-03, - 2DIAGNOSTIC, 25, -1.002803561538e+00, 8.813808144491e-04, 7.4903e-02, 1.5540e-03, - 2DIAGNOSTIC, 26, -1.005598293631e+00, 1.189363935691e-03, 7.6874e-02, 1.9710e-03, - 2DIAGNOSTIC, 27, -1.005458318711e+00, 1.371290353591e-03, 7.8922e-02, 2.0480e-03, - 2DIAGNOSTIC, 28, -1.006929945062e+00, 1.445957384185e-03, 8.0691e-02, 1.7688e-03, - 2DIAGNOSTIC, 29, -1.012238998010e+00, 1.427940040411e-03, 8.2418e-02, 1.7269e-03, - 2DIAGNOSTIC, 30, -1.015529046486e+00, 1.305529343373e-03, 8.4434e-02, 2.0161e-03, - 2DIAGNOSTIC, 31, -1.016939604194e+00, 1.106830740247e-03, 8.5952e-02, 1.5180e-03, - 2DIAGNOSTIC, 32, -1.015545262500e+00, 8.543241552626e-04, 8.7268e-02, 1.3158e-03, - 2DIAGNOSTIC, 33, -1.019456066076e+00, 6.134054727258e-04, 8.9249e-02, 1.9810e-03, - 2DIAGNOSTIC, 34, -1.020396777215e+00, 3.620347219078e-04, 9.1823e-02, 2.5740e-03, - 2DIAGNOSTIC, 35, -1.023165727252e+00, 3.444316501582e-04, 9.3850e-02, 2.0270e-03, - 2DIAGNOSTIC, 36, -1.024679596380e+00, 3.306980234570e-04, 9.5775e-02, 1.9250e-03, - 2DIAGNOSTIC, 37, -1.058270064209e+00, 5.496672939068e-04, 9.7995e-02, 2.2202e-03, - 2DIAGNOSTIC, 38, -1.080162709787e+00, 8.738836021460e-04, 1.0028e-01, 2.2891e-03, - 2DIAGNOSTIC, 39, -1.085545254042e+00, 1.173454309270e-03, 1.0207e-01, 1.7848e-03, - 2DIAGNOSTIC, 40, -1.091802125677e+00, 1.417982328576e-03, 1.0362e-01, 1.5531e-03, - 2DIAGNOSTIC, 41, -1.102666822304e+00, 1.601412798247e-03, 1.0587e-01, 2.2502e-03, - 2DIAGNOSTIC, 42, -1.107282571331e+00, 1.638667532287e-03, 1.0761e-01, 1.7390e-03, - 2DIAGNOSTIC, 43, -1.110636609136e+00, 1.563571776424e-03, 1.0939e-01, 1.7772e-03, - 2DIAGNOSTIC, 44, -1.112946426722e+00, 1.367050380945e-03, 1.1111e-01, 1.7240e-03, - 2DIAGNOSTIC, 45, -1.115217155357e+00, 1.085522871679e-03, 1.1283e-01, 1.7149e-03, - 2DIAGNOSTIC, 46, -1.114877805959e+00, 7.162870585664e-04, 1.1434e-01, 1.5080e-03, - 2DIAGNOSTIC, 47, -1.115950501103e+00, 5.017483983861e-04, 1.1605e-01, 1.7099e-03, - 2DIAGNOSTIC, 48, -1.117437074954e+00, 3.868588870072e-04, 1.1783e-01, 1.7891e-03, - 2DIAGNOSTIC, 49, -1.117675812323e+00, 2.721701330674e-04, 1.1930e-01, 1.4689e-03, - 2DIAGNOSTIC, 50, -1.114667348688e+00, 1.536317232267e-04, 1.2150e-01, 2.1982e-03, - 2DIAGNOSTIC, 51, -1.114799473587e+00, 8.635027350523e-05, 1.2304e-01, 1.5399e-03, - 2DIAGNOSTIC, 52, -1.113869232971e+00, 3.307113147361e-05, 1.2462e-01, 1.5788e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.315061774189e-01, 1.797693134862e+308, 1.6849e-01, 4.3868e-02, - 2DIAGNOSTIC, 2, -7.316816026370e-01, 1.797693134862e+308, 1.7128e-01, 2.7909e-03, - 2DIAGNOSTIC, 3, -7.332632103348e-01, 1.797693134862e+308, 1.7409e-01, 2.8059e-03, - 2DIAGNOSTIC, 4, -7.356795313271e-01, 1.797693134862e+308, 1.7684e-01, 2.7549e-03, - 2DIAGNOSTIC, 5, -7.382699284896e-01, 1.797693134862e+308, 1.7925e-01, 2.4080e-03, - 2DIAGNOSTIC, 6, -7.393506367397e-01, 1.797693134862e+308, 1.8200e-01, 2.7502e-03, - 2DIAGNOSTIC, 7, -7.403431392064e-01, 1.797693134862e+308, 1.8600e-01, 3.9971e-03, - 2DIAGNOSTIC, 8, -7.403578276680e-01, 1.797693134862e+308, 1.8849e-01, 2.4948e-03, - 2DIAGNOSTIC, 9, -7.404039638150e-01, 1.797693134862e+308, 1.9086e-01, 2.3661e-03, - 2DIAGNOSTIC, 10, -7.404050977745e-01, 9.229800591343e-04, 1.9398e-01, 3.1199e-03, - 2DIAGNOSTIC, 11, -7.404468931200e-01, 6.847304064938e-04, 1.9672e-01, 2.7480e-03, - 2DIAGNOSTIC, 12, -7.404401868622e-01, 4.307930300990e-04, 1.9943e-01, 2.7049e-03, - 2DIAGNOSTIC, 13, -7.405295449328e-01, 2.262104188443e-04, 2.0201e-01, 2.5840e-03, - 2DIAGNOSTIC, 14, -7.408125795856e-01, 1.035574335763e-04, 2.0460e-01, 2.5909e-03, - 2DIAGNOSTIC, 15, -7.411470345489e-01, 6.245731690410e-05, 2.0740e-01, 2.7938e-03, - 2DIAGNOSTIC, 16, -7.418315539989e-01, 6.264593106683e-05, 2.1101e-01, 3.6089e-03, - 2DIAGNOSTIC, 17, -7.419483869665e-01, 8.208239683172e-05, 2.1385e-01, 2.8419e-03, - 2DIAGNOSTIC, 18, -7.418549353499e-01, 9.041388736002e-05, 2.1642e-01, 2.5671e-03, - 2DIAGNOSTIC, 19, -7.419125248230e-01, 9.193854995421e-05, 2.1898e-01, 2.5609e-03, - 2DIAGNOSTIC, 20, -7.420193134013e-01, 8.680687765822e-05, 2.2124e-01, 2.2669e-03, - 2DIAGNOSTIC, 21, -7.420809193191e-01, 7.591586282094e-05, 2.2379e-01, 2.5430e-03, - 2DIAGNOSTIC, 22, -7.421070967444e-01, 5.945839866500e-05, 2.2626e-01, 2.4741e-03, - 2DIAGNOSTIC, 23, -7.421005266645e-01, 4.055629195714e-05, 2.2890e-01, 2.6400e-03, - 2DIAGNOSTIC, 24, -7.421974689553e-01, 2.566325627569e-05, 2.3151e-01, 2.6078e-03, - 2DIAGNOSTIC, 25, -7.422178597059e-01, 1.475844643470e-05, 2.3412e-01, 2.6090e-03, - 2DIAGNOSTIC, 26, -7.422093491407e-01, 1.334669398879e-05, 2.3644e-01, 2.3232e-03, - 2DIAGNOSTIC, 27, -7.421627307467e-01, 1.199027293108e-05, 2.3876e-01, 2.3210e-03, - 2DIAGNOSTIC, 28, -7.422854124932e-01, 1.013780249632e-05, 2.4129e-01, 2.5280e-03, - 2DIAGNOSTIC, 29, -7.423176751782e-01, 8.650325158829e-06, 2.4379e-01, 2.4960e-03, - 2DIAGNOSTIC, 30, -7.421555218307e-01, 5.808762387212e-06, 2.4655e-01, 2.7659e-03, - 2DIAGNOSTIC, 31, -7.421704746920e-01, 3.749293784001e-06, 2.4938e-01, 2.8250e-03, - 2DIAGNOSTIC, 32, -7.421497586140e-01, 1.628920172865e-06, 2.5169e-01, 2.3110e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.539771186782e-01, 1.797693134862e+308, 3.1353e-01, 6.1847e-02, - 2DIAGNOSTIC, 2, -5.543539905059e-01, 1.797693134862e+308, 3.2488e-01, 1.1348e-02, - 2DIAGNOSTIC, 3, -5.549271848835e-01, 1.797693134862e+308, 3.3681e-01, 1.1929e-02, - 2DIAGNOSTIC, 4, -5.556417172424e-01, 1.797693134862e+308, 3.4899e-01, 1.2183e-02, - 2DIAGNOSTIC, 5, -5.567086831548e-01, 1.797693134862e+308, 3.6073e-01, 1.1733e-02, - 2DIAGNOSTIC, 6, -5.579049378957e-01, 1.797693134862e+308, 3.7194e-01, 1.1215e-02, - 2DIAGNOSTIC, 7, -5.591574329515e-01, 1.797693134862e+308, 3.8312e-01, 1.1176e-02, - 2DIAGNOSTIC, 8, -5.602923606005e-01, 1.797693134862e+308, 3.9631e-01, 1.3196e-02, - 2DIAGNOSTIC, 9, -5.607204738355e-01, 1.797693134862e+308, 4.1298e-01, 1.6665e-02, - 2DIAGNOSTIC, 10, -5.612289921502e-01, 9.422169066525e-04, 4.2482e-01, 1.1840e-02, - 2DIAGNOSTIC, 11, -5.613851596689e-01, 8.357664577496e-04, 4.3978e-01, 1.4961e-02, - 2DIAGNOSTIC, 12, -5.615097439658e-01, 6.932930535623e-04, 4.5153e-01, 1.1749e-02, - 2DIAGNOSTIC, 13, -5.615749138274e-01, 5.352466018885e-04, 4.6388e-01, 1.2353e-02, - 2DIAGNOSTIC, 14, -5.616701954589e-01, 3.806945341954e-04, 4.7794e-01, 1.4056e-02, - 2DIAGNOSTIC, 15, -5.617412210283e-01, 2.505140777377e-04, 4.9230e-01, 1.4363e-02, - 2DIAGNOSTIC, 16, -5.617277247053e-01, 1.508589442246e-04, 5.0617e-01, 1.3866e-02, - 2DIAGNOSTIC, 17, -5.617491934766e-01, 8.679337490240e-05, 5.1972e-01, 1.3556e-02, - 2DIAGNOSTIC, 18, -5.617635650131e-01, 5.433278749729e-05, 5.3318e-01, 1.3457e-02, - 2DIAGNOSTIC, 19, -5.617616769138e-01, 3.147803384761e-05, 5.4655e-01, 1.3375e-02, - 2DIAGNOSTIC, 20, -5.617645038635e-01, 2.106285082029e-05, 5.6285e-01, 1.6295e-02, - 2DIAGNOSTIC, 21, -5.617613221967e-01, 1.350003207871e-05, 5.7534e-01, 1.2486e-02, - 2DIAGNOSTIC, 22, -5.617547045906e-01, 8.235172955257e-06, 5.8727e-01, 1.1939e-02, - 2DIAGNOSTIC, 23, -5.617483181579e-01, 4.043578965253e-06, 5.9922e-01, 1.1941e-02, - 2DIAGNOSTIC, 24, -5.617602884692e-01, 2.182998951418e-06, 6.1260e-01, 1.3381e-02, - 2DIAGNOSTIC, 25, -5.617575684604e-01, 1.784828349907e-06, 6.2590e-01, 1.3308e-02, - 2DIAGNOSTIC, 26, -5.617558272017e-01, 1.066558290561e-06, 6.4073e-01, 1.4823e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.580159345006e-01, 1.797693134862e+308, 8.2411e-01, 1.8338e-01, - Elapsed time (stage 1): 8.4570e-01 - - -Total elapsed time: 2.1696e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:23:35 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 35 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 52 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 75.19% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 75.19% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[10573 8714 9914 11666 20841 3437 12116 2752 8334 5999 11113 13356 - 15899 4777 1452 7456 1540 254 419 877 994 271 407 383 - 0 188 162 0 0 185 0 181 0 0 209] -[46374 35663 24529 32194 23136 17895 10096 18923 7824 12496 6178 9042 - 12583 9856 11601 8367 9700 8285 8156 1858 5028 3123 5298 944 - 1670 2339 1669 1244 1575 1108 1494 1598 710 999 783] -[16221 3670 17707 1449 454 265 165 6848 1420 0 173 2415 - 12992 12024 1781 9525 0 2065 447 0 0 0 7630 426 - 3767 8396 11917 9558 13650 171 425 0 0 2123 0] -[ 1738 30325 5506 1629 2846 2917 5326 13722 1063 1944 2195 17932 - 868 866 12489 40516 3470 17710 5996 5606 876 1975 21164 7890 - 558 34221 782 759 843 2704 1445 1204 16367 6584 1441] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:33:08 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:33:13 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:36:56 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:36:56 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:36:56 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:37:06 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:37:09 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC010 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:38:16 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983051776885986,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:38:41 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:41:47 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:41:48 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:43:14 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:43:14 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55df99f06d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [76.2585, 125.918, -122.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55df99d7d730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f20ea92b010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55df99f0a020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 68.202, -106.063] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55df99f100c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f20e722e010 - Container manages memory: true - Size: 7207200 - Capacity: 7207200 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55df99f20840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [76.2585, 125.918, -122.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55df99f0c890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f20e255a010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x55df99f243e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 68.202, -106.063] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55df99f13130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f20dee5d010 - Container manages memory: true - Size: 7207200 - Capacity: 7207200 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.694845587300e-01, 1.797693134862e+308, 2.2790e-01, 2.2790e-01, - 2DIAGNOSTIC, 2, -4.712776770748e-01, 1.797693134862e+308, 2.2941e-01, 1.5080e-03, - 2DIAGNOSTIC, 3, -4.738000663495e-01, 1.797693134862e+308, 2.3075e-01, 1.3430e-03, - 2DIAGNOSTIC, 4, -4.776160090632e-01, 1.797693134862e+308, 2.3212e-01, 1.3659e-03, - 2DIAGNOSTIC, 5, -4.822564608066e-01, 1.797693134862e+308, 2.3348e-01, 1.3649e-03, - 2DIAGNOSTIC, 6, -4.907211436123e-01, 1.797693134862e+308, 2.3493e-01, 1.4520e-03, - 2DIAGNOSTIC, 7, -5.180831212006e-01, 1.797693134862e+308, 2.3633e-01, 1.3990e-03, - 2DIAGNOSTIC, 8, -5.790039385781e-01, 1.797693134862e+308, 2.3805e-01, 1.7231e-03, - 2DIAGNOSTIC, 9, -5.916496469083e-01, 1.797693134862e+308, 2.4116e-01, 3.1099e-03, - 2DIAGNOSTIC, 10, -5.937851473593e-01, 1.787055737640e-02, 2.4310e-01, 1.9319e-03, - 2DIAGNOSTIC, 11, -5.942368431743e-01, 1.769972521081e-02, 2.4478e-01, 1.6811e-03, - 2DIAGNOSTIC, 12, -5.990937095523e-01, 1.625771993183e-02, 2.4667e-01, 1.8950e-03, - 2DIAGNOSTIC, 13, -5.983751195118e-01, 1.363843189915e-02, 2.4841e-01, 1.7362e-03, - 2DIAGNOSTIC, 14, -6.026641772288e-01, 1.050864807336e-02, 2.5030e-01, 1.8950e-03, - 2DIAGNOSTIC, 15, -6.078630075244e-01, 7.262041114980e-03, 2.5216e-01, 1.8530e-03, - 2DIAGNOSTIC, 16, -6.089306872218e-01, 4.114577786475e-03, 2.5404e-01, 1.8821e-03, - 2DIAGNOSTIC, 17, -6.078961621811e-01, 1.752457499201e-03, 2.5567e-01, 1.6320e-03, - 2DIAGNOSTIC, 18, -6.074927755538e-01, 1.235462689277e-03, 2.5753e-01, 1.8589e-03, - 2DIAGNOSTIC, 19, -6.078640999357e-01, 1.012357209007e-03, 2.5912e-01, 1.5912e-03, - 2DIAGNOSTIC, 20, -6.082004526134e-01, 7.800740655310e-04, 2.6095e-01, 1.8258e-03, - 2DIAGNOSTIC, 21, -6.122681972365e-01, 6.052118573823e-04, 2.6324e-01, 2.2938e-03, - 2DIAGNOSTIC, 22, -6.140282957176e-01, 5.443803417398e-04, 2.6509e-01, 1.8542e-03, - 2DIAGNOSTIC, 23, -6.153477603271e-01, 4.511042181554e-04, 2.6696e-01, 1.8611e-03, - 2DIAGNOSTIC, 24, -6.160135712054e-01, 4.251327606300e-04, 2.6859e-01, 1.6320e-03, - 2DIAGNOSTIC, 25, -6.164598939374e-01, 4.732877637222e-04, 2.7043e-01, 1.8420e-03, - 2DIAGNOSTIC, 26, -6.181101480867e-01, 5.245038422716e-04, 2.7225e-01, 1.8229e-03, - 2DIAGNOSTIC, 27, -6.194061970654e-01, 5.261618112271e-04, 2.7412e-01, 1.8661e-03, - 2DIAGNOSTIC, 28, -6.190260809055e-01, 4.648464430650e-04, 2.7620e-01, 2.0771e-03, - 2DIAGNOSTIC, 29, -6.202652679709e-01, 3.934654639504e-04, 2.7799e-01, 1.7979e-03, - 2DIAGNOSTIC, 30, -6.199835359466e-01, 2.892976919034e-04, 2.7964e-01, 1.6491e-03, - 2DIAGNOSTIC, 31, -6.197308735254e-01, 2.247498961970e-04, 2.8126e-01, 1.6160e-03, - 2DIAGNOSTIC, 32, -6.190674416257e-01, 1.597341319890e-04, 2.8312e-01, 1.8609e-03, - 2DIAGNOSTIC, 33, -6.198719757679e-01, 1.156067551447e-04, 2.8473e-01, 1.6050e-03, - 2DIAGNOSTIC, 34, -6.195181264202e-01, 6.748738167789e-05, 2.8654e-01, 1.8101e-03, - 2DIAGNOSTIC, 35, -6.206059899836e-01, 3.689791931057e-05, 2.8837e-01, 1.8351e-03, - 2DIAGNOSTIC, 36, -6.215514117700e-01, 3.920586567375e-05, 2.9018e-01, 1.8079e-03, - 2DIAGNOSTIC, 37, -6.222939776084e-01, 6.457884221727e-05, 2.9613e-01, 5.9481e-03, - 2DIAGNOSTIC, 38, -6.222939767165e-01, 7.707261601404e-05, 2.9773e-01, 1.6060e-03, - 2DIAGNOSTIC, 39, -6.222939908059e-01, 9.720144693572e-05, 2.9935e-01, 1.6139e-03, - 2DIAGNOSTIC, 40, -6.222940146259e-01, 1.037429768649e-04, 3.0094e-01, 1.5941e-03, - 2DIAGNOSTIC, 41, -6.222940548905e-01, 9.717513485885e-05, 3.0254e-01, 1.6010e-03, - 2DIAGNOSTIC, 42, -6.222941229357e-01, 7.385628562443e-05, 3.0410e-01, 1.5600e-03, - 2DIAGNOSTIC, 43, -6.222942378805e-01, 5.409819242644e-05, 3.0577e-01, 1.6692e-03, - 2DIAGNOSTIC, 44, -6.222944319117e-01, 2.625189924046e-05, 3.0734e-01, 1.5681e-03, - 2DIAGNOSTIC, 45, -6.222947590430e-01, 8.666699305881e-06, 3.0894e-01, 1.6012e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.779931768375e-01, 1.797693134862e+308, 5.2857e-01, 2.1963e-01, - 2DIAGNOSTIC, 2, -4.770870550962e-01, 1.797693134862e+308, 5.3080e-01, 2.2311e-03, - 2DIAGNOSTIC, 3, -4.776381191293e-01, 1.797693134862e+308, 5.3299e-01, 2.1839e-03, - 2DIAGNOSTIC, 4, -4.776149207282e-01, 1.797693134862e+308, 5.3505e-01, 2.0590e-03, - 2DIAGNOSTIC, 5, -4.787936292504e-01, 1.797693134862e+308, 5.3745e-01, 2.4040e-03, - 2DIAGNOSTIC, 6, -4.812795311634e-01, 1.797693134862e+308, 5.4038e-01, 2.9280e-03, - 2DIAGNOSTIC, 7, -4.812729519110e-01, 1.797693134862e+308, 5.4284e-01, 2.4650e-03, - 2DIAGNOSTIC, 8, -4.812994407929e-01, 1.797693134862e+308, 5.4500e-01, 2.1520e-03, - 2DIAGNOSTIC, 9, -4.813090400132e-01, 1.797693134862e+308, 5.4742e-01, 2.4281e-03, - 2DIAGNOSTIC, 10, -4.813128441809e-01, 6.964100809386e-04, 5.4980e-01, 2.3739e-03, - 2DIAGNOSTIC, 11, -4.814180947821e-01, 6.116925638999e-04, 5.5204e-01, 2.2378e-03, - 2DIAGNOSTIC, 12, -4.815398582400e-01, 4.474030799171e-04, 5.5459e-01, 2.5511e-03, - 2DIAGNOSTIC, 13, -4.816609447224e-01, 3.013370208973e-04, 5.5694e-01, 2.3551e-03, - 2DIAGNOSTIC, 14, -4.810943833160e-01, 1.239490997416e-04, 5.5973e-01, 2.7850e-03, - 2DIAGNOSTIC, 15, -4.815421047194e-01, 2.128629111874e-05, 5.6279e-01, 3.0620e-03, - 2DIAGNOSTIC, 16, -4.814265782872e-01, 1.669173875878e-05, 5.7057e-01, 7.7860e-03, - 2DIAGNOSTIC, 17, -4.814265763720e-01, 1.091676426259e-05, 5.7277e-01, 2.1980e-03, - 2DIAGNOSTIC, 18, -4.814265872848e-01, 6.051676229156e-06, 5.7493e-01, 2.1601e-03, - 2DIAGNOSTIC, 19, -4.814266057307e-01, 1.872625627064e-06, 5.7711e-01, 2.1811e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.668909237123e-01, 1.797693134862e+308, 8.1869e-01, 2.4158e-01, - 2DIAGNOSTIC, 2, -3.674061871973e-01, 1.797693134862e+308, 8.3197e-01, 1.3274e-02, - 2DIAGNOSTIC, 3, -3.679864611707e-01, 1.797693134862e+308, 8.4729e-01, 1.5326e-02, - 2DIAGNOSTIC, 4, -3.683596219859e-01, 1.797693134862e+308, 8.5965e-01, 1.2353e-02, - 2DIAGNOSTIC, 5, -3.686518359642e-01, 1.797693134862e+308, 8.7179e-01, 1.2141e-02, - 2DIAGNOSTIC, 6, -3.692955387829e-01, 1.797693134862e+308, 8.8396e-01, 1.2172e-02, - 2DIAGNOSTIC, 7, -3.719926982376e-01, 1.797693134862e+308, 8.9789e-01, 1.3930e-02, - 2DIAGNOSTIC, 8, -3.722806731128e-01, 1.797693134862e+308, 9.0984e-01, 1.1945e-02, - 2DIAGNOSTIC, 9, -3.738942363975e-01, 1.797693134862e+308, 9.2209e-01, 1.2250e-02, - 2DIAGNOSTIC, 10, -3.874233025823e-01, 2.376599274391e-03, 9.3442e-01, 1.2330e-02, - 2DIAGNOSTIC, 11, -4.619349576701e-01, 8.001489011318e-03, 9.5457e-01, 2.0154e-02, - 2DIAGNOSTIC, 12, -4.949969966325e-01, 1.363930723600e-02, 9.8019e-01, 2.5622e-02, - 2DIAGNOSTIC, 13, -4.950716834712e-01, 1.703500238292e-02, 9.9275e-01, 1.2562e-02, - 2DIAGNOSTIC, 14, -4.955205667644e-01, 1.843534388758e-02, 1.0051e+00, 1.2297e-02, - 2DIAGNOSTIC, 15, -4.960879222156e-01, 1.799183788658e-02, 1.0171e+00, 1.2024e-02, - 2DIAGNOSTIC, 16, -4.966768985646e-01, 1.597365815387e-02, 1.0291e+00, 1.1977e-02, - 2DIAGNOSTIC, 17, -4.978130884644e-01, 1.290818752513e-02, 1.0414e+00, 1.2343e-02, - 2DIAGNOSTIC, 18, -5.000232277075e-01, 9.195733300545e-03, 1.0545e+00, 1.3059e-02, - 2DIAGNOSTIC, 19, -5.043451763617e-01, 5.333512154030e-03, 1.0677e+00, 1.3230e-02, - 2DIAGNOSTIC, 20, -5.091042117153e-01, 1.968973590602e-03, 1.0857e+00, 1.8024e-02, - 2DIAGNOSTIC, 21, -5.145060271207e-01, 1.239724835107e-03, 1.0984e+00, 1.2676e-02, - 2DIAGNOSTIC, 22, -5.255130715307e-01, 1.761836548898e-03, 1.1124e+00, 1.4020e-02, - 2DIAGNOSTIC, 23, -5.504139177016e-01, 2.747766001688e-03, 1.1267e+00, 1.4312e-02, - 2DIAGNOSTIC, 24, -5.569172288353e-01, 3.543746065848e-03, 1.1390e+00, 1.2290e-02, - 2DIAGNOSTIC, 25, -5.586961202957e-01, 3.995497876759e-03, 1.1534e+00, 1.4378e-02, - 2DIAGNOSTIC, 26, -5.618960830982e-01, 4.129989887771e-03, 1.1673e+00, 1.3883e-02, - 2DIAGNOSTIC, 27, -5.636448923856e-01, 3.927290375138e-03, 1.1822e+00, 1.4969e-02, - 2DIAGNOSTIC, 28, -5.660961889925e-01, 3.465708210573e-03, 1.2028e+00, 2.0604e-02, - 2DIAGNOSTIC, 29, -5.671173042704e-01, 2.826824203483e-03, 1.2144e+00, 1.1553e-02, - 2DIAGNOSTIC, 30, -5.701087013504e-01, 2.135270234778e-03, 1.2278e+00, 1.3419e-02, - 2DIAGNOSTIC, 31, -5.707534297870e-01, 1.412510852954e-03, 1.2402e+00, 1.2366e-02, - 2DIAGNOSTIC, 32, -5.714543189741e-01, 8.159206971613e-04, 1.2518e+00, 1.1640e-02, - 2DIAGNOSTIC, 33, -5.742560171171e-01, 6.776668276553e-04, 1.2640e+00, 1.2226e-02, - 2DIAGNOSTIC, 34, -5.764548041837e-01, 6.336294086595e-04, 1.2837e+00, 1.9705e-02, - 2DIAGNOSTIC, 35, -5.780744076221e-01, 5.875618099649e-04, 1.2963e+00, 1.2565e-02, - 2DIAGNOSTIC, 36, -5.788703895347e-01, 5.532974662960e-04, 1.3121e+00, 1.5755e-02, - 2DIAGNOSTIC, 37, -5.794526682267e-01, 5.052102808000e-04, 1.3260e+00, 1.3885e-02, - 2DIAGNOSTIC, 38, -5.802844706190e-01, 4.615479829965e-04, 1.3398e+00, 1.3838e-02, - 2DIAGNOSTIC, 39, -5.826809643577e-01, 4.250159318177e-04, 1.3542e+00, 1.4388e-02, - 2DIAGNOSTIC, 40, -5.833558082780e-01, 4.017549742949e-04, 1.3673e+00, 1.3072e-02, - 2DIAGNOSTIC, 41, -5.836848727311e-01, 3.558793482475e-04, 1.3835e+00, 1.6220e-02, - 2DIAGNOSTIC, 42, -5.837570289769e-01, 2.890878581831e-04, 1.3963e+00, 1.2797e-02, - 2DIAGNOSTIC, 43, -5.837944577997e-01, 2.350275938906e-04, 1.4146e+00, 1.8324e-02, - 2DIAGNOSTIC, 44, -5.837882328021e-01, 1.885500603630e-04, 1.4277e+00, 1.3151e-02, - 2DIAGNOSTIC, 45, -5.837835712832e-01, 1.463225680619e-04, 1.4395e+00, 1.1757e-02, - 2DIAGNOSTIC, 46, -5.837538553180e-01, 1.018907195234e-04, 1.4550e+00, 1.5495e-02, - 2DIAGNOSTIC, 47, -5.837626214384e-01, 5.711353846921e-05, 1.4688e+00, 1.3775e-02, - 2DIAGNOSTIC, 48, -5.837542364701e-01, 1.791732057623e-05, 1.4807e+00, 1.1969e-02, - 2DIAGNOSTIC, 49, -5.837505922392e-01, 5.687787873566e-06, 1.4927e+00, 1.1923e-02, - 2DIAGNOSTIC, 50, -5.837716221372e-01, 1.115867963572e-06, 1.5069e+00, 1.4215e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.956450813227e-01, 1.797693134862e+308, 1.9195e+00, 4.1260e-01, - 2DIAGNOSTIC, 2, -4.959177800561e-01, 1.797693134862e+308, 2.0069e+00, 8.7464e-02, - 2DIAGNOSTIC, 3, -4.961408773088e-01, 1.797693134862e+308, 2.0917e+00, 8.4808e-02, - 2DIAGNOSTIC, 4, -4.963834437295e-01, 1.797693134862e+308, 2.1740e+00, 8.2263e-02, - 2DIAGNOSTIC, 5, -4.969728447690e-01, 1.797693134862e+308, 2.2599e+00, 8.5869e-02, - 2DIAGNOSTIC, 6, -4.976016012351e-01, 1.797693134862e+308, 2.3552e+00, 9.5348e-02, - 2DIAGNOSTIC, 7, -4.979197987350e-01, 1.797693134862e+308, 2.4782e+00, 1.2293e-01, - 2DIAGNOSTIC, 8, -4.981440814401e-01, 1.797693134862e+308, 2.5588e+00, 8.0601e-02, - 2DIAGNOSTIC, 9, -4.983828514239e-01, 1.797693134862e+308, 2.6530e+00, 9.4264e-02, - 2DIAGNOSTIC, 10, -4.985389876142e-01, 4.190651684637e-04, 2.7848e+00, 1.3175e-01, - 2DIAGNOSTIC, 11, -4.985830914224e-01, 3.542971335523e-04, 2.8656e+00, 8.0810e-02, - 2DIAGNOSTIC, 12, -4.987129524920e-01, 2.881089749045e-04, 2.9499e+00, 8.4350e-02, - 2DIAGNOSTIC, 13, -4.987524975870e-01, 2.180705444403e-04, 3.0333e+00, 8.3395e-02, - 2DIAGNOSTIC, 14, -4.988363928100e-01, 1.514523642970e-04, 3.1295e+00, 9.6205e-02, - 2DIAGNOSTIC, 15, -4.989311940897e-01, 1.056323534799e-04, 3.2529e+00, 1.2334e-01, - 2DIAGNOSTIC, 16, -4.989632912701e-01, 7.945232372675e-05, 3.3802e+00, 1.2732e-01, - 2DIAGNOSTIC, 17, -4.989745204103e-01, 6.022710898670e-05, 3.5023e+00, 1.2208e-01, - 2DIAGNOSTIC, 18, -4.989734858760e-01, 4.470198513859e-05, 3.5964e+00, 9.4154e-02, - 2DIAGNOSTIC, 19, -4.989708493780e-01, 3.383785447410e-05, 3.6788e+00, 8.2346e-02, - 2DIAGNOSTIC, 20, -4.989687024591e-01, 2.544396743059e-05, 3.7724e+00, 9.3600e-02, - 2DIAGNOSTIC, 21, -4.989700823268e-01, 1.678897778519e-05, 3.8547e+00, 8.2376e-02, - 2DIAGNOSTIC, 22, -4.989706437660e-01, 1.090519329860e-05, 3.9369e+00, 8.2111e-02, - 2DIAGNOSTIC, 23, -4.989743262683e-01, 5.701905688014e-06, 4.0191e+00, 8.2223e-02, - 2DIAGNOSTIC, 24, -4.989838126952e-01, 2.696532838610e-06, 4.1437e+00, 1.2462e-01, - 2DIAGNOSTIC, 25, -4.989802722893e-01, 1.863536284605e-06, 4.2435e+00, 9.9843e-02, - 2DIAGNOSTIC, 26, -4.989797121485e-01, 1.728597160633e-06, 4.3437e+00, 1.0021e-01, - 2DIAGNOSTIC, 27, -4.989787455816e-01, 1.774386095908e-06, 4.4257e+00, 8.1986e-02, - 2DIAGNOSTIC, 28, -4.989799986832e-01, 1.763960062302e-06, 4.5078e+00, 8.2060e-02, - 2DIAGNOSTIC, 29, -4.989780890343e-01, 1.603147236455e-06, 4.6048e+00, 9.7030e-02, - 2DIAGNOSTIC, 30, -4.989802215778e-01, 1.407106384833e-06, 4.6877e+00, 8.2844e-02, - 2DIAGNOSTIC, 31, -4.989854798814e-01, 1.315833218135e-06, 4.7733e+00, 8.5675e-02, - 2DIAGNOSTIC, 32, -4.989981267622e-01, 1.434911503957e-06, 4.8566e+00, 8.3224e-02, - 2DIAGNOSTIC, 33, -4.990145978667e-01, 1.842982991072e-06, 4.9382e+00, 8.1609e-02, - 2DIAGNOSTIC, 34, -4.990348616711e-01, 2.640360340190e-06, 5.0330e+00, 9.4876e-02, - 2DIAGNOSTIC, 35, -4.990676410038e-01, 3.703325634614e-06, 5.1162e+00, 8.3170e-02, - 2DIAGNOSTIC, 36, -4.990893349866e-01, 4.767407390777e-06, 5.1971e+00, 8.0899e-02, - 2DIAGNOSTIC, 37, -4.991390782512e-01, 6.152675461106e-06, 5.2919e+00, 9.4744e-02, - 2DIAGNOSTIC, 38, -4.991642015169e-01, 7.343734874297e-06, 5.4003e+00, 1.0840e-01, - 2DIAGNOSTIC, 39, -4.991700217978e-01, 7.909556719188e-06, 5.5087e+00, 1.0846e-01, - 2DIAGNOSTIC, 40, -4.991719684079e-01, 7.835983463971e-06, 5.6190e+00, 1.1029e-01, - 2DIAGNOSTIC, 41, -4.991731864835e-01, 7.183079541170e-06, 5.7172e+00, 9.8174e-02, - 2DIAGNOSTIC, 42, -4.991817069721e-01, 6.228430104310e-06, 5.8126e+00, 9.5394e-02, - 2DIAGNOSTIC, 43, -4.991768181188e-01, 4.940410434605e-06, 5.9034e+00, 9.0775e-02, - 2DIAGNOSTIC, 44, -4.991769385183e-01, 3.576168604000e-06, 5.9803e+00, 7.6987e-02, - 2DIAGNOSTIC, 45, -4.991772136706e-01, 2.423665924029e-06, 6.0625e+00, 8.2162e-02, - 2DIAGNOSTIC, 46, -4.991788058369e-01, 1.431126107943e-06, 6.1436e+00, 8.1051e-02, - 2DIAGNOSTIC, 47, -4.991838496033e-01, 1.065004057849e-06, 6.2330e+00, 8.9422e-02, - 2DIAGNOSTIC, 48, -4.991923381962e-01, 1.073862935169e-06, 6.3256e+00, 9.2581e-02, - 2DIAGNOSTIC, 49, -4.991903527621e-01, 1.087143543566e-06, 6.4200e+00, 9.4398e-02, - 2DIAGNOSTIC, 50, -4.991847859381e-01, 1.019201630394e-06, 6.5146e+00, 9.4669e-02, - Elapsed time (stage 0): 6.6632e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.072463095406e-01, 1.797693134862e+308, 1.9299e-01, 1.9299e-01, - 2DIAGNOSTIC, 2, -8.083736925431e-01, 1.797693134862e+308, 1.9412e-01, 1.1280e-03, - 2DIAGNOSTIC, 3, -8.094454912965e-01, 1.797693134862e+308, 1.9529e-01, 1.1671e-03, - 2DIAGNOSTIC, 4, -8.120265635136e-01, 1.797693134862e+308, 1.9651e-01, 1.2219e-03, - 2DIAGNOSTIC, 5, -8.154371780423e-01, 1.797693134862e+308, 1.9794e-01, 1.4310e-03, - 2DIAGNOSTIC, 6, -8.173650851255e-01, 1.797693134862e+308, 1.9914e-01, 1.2000e-03, - 2DIAGNOSTIC, 7, -8.202235159535e-01, 1.797693134862e+308, 2.0039e-01, 1.2548e-03, - 2DIAGNOSTIC, 8, -8.328408861365e-01, 1.797693134862e+308, 2.0159e-01, 1.1990e-03, - 2DIAGNOSTIC, 9, -8.464572674166e-01, 1.797693134862e+308, 2.0302e-01, 1.4319e-03, - 2DIAGNOSTIC, 10, -8.545579828544e-01, 3.498887224346e-03, 2.0449e-01, 1.4679e-03, - 2DIAGNOSTIC, 11, -8.611144461853e-01, 3.910868164780e-03, 2.0621e-01, 1.7221e-03, - 2DIAGNOSTIC, 12, -8.691506478830e-01, 4.163259307575e-03, 2.0851e-01, 2.2950e-03, - 2DIAGNOSTIC, 13, -8.763277470150e-01, 4.206894269115e-03, 2.0994e-01, 1.4329e-03, - 2DIAGNOSTIC, 14, -8.793845262227e-01, 3.991173066596e-03, 2.1128e-01, 1.3361e-03, - 2DIAGNOSTIC, 15, -8.864188466356e-01, 3.678727389029e-03, 2.1286e-01, 1.5831e-03, - 2DIAGNOSTIC, 16, -8.931843245344e-01, 3.254553615224e-03, 2.1466e-01, 1.7951e-03, - 2DIAGNOSTIC, 17, -8.946100614614e-01, 2.662912352675e-03, 2.1802e-01, 3.3679e-03, - 2DIAGNOSTIC, 18, -8.946123595781e-01, 2.126664931731e-03, 2.1939e-01, 1.3661e-03, - 2DIAGNOSTIC, 19, -8.947404816130e-01, 1.694916435587e-03, 2.2115e-01, 1.7588e-03, - 2DIAGNOSTIC, 20, -8.941762933980e-01, 1.275202024303e-03, 2.2292e-01, 1.7741e-03, - 2DIAGNOSTIC, 21, -8.944383356635e-01, 8.832651401919e-04, 2.2469e-01, 1.7700e-03, - 2DIAGNOSTIC, 22, -8.939968184360e-01, 5.590939607001e-04, 2.2638e-01, 1.6861e-03, - 2DIAGNOSTIC, 23, -8.943262562410e-01, 3.217716572563e-04, 2.2818e-01, 1.8029e-03, - 2DIAGNOSTIC, 24, -8.945446013854e-01, 1.186422932535e-04, 2.2979e-01, 1.6050e-03, - 2DIAGNOSTIC, 25, -8.941039305589e-01, 6.041764098477e-06, 2.3139e-01, 1.6000e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.871660209473e-01, 1.797693134862e+308, 4.2482e-01, 1.9343e-01, - 2DIAGNOSTIC, 2, -7.881988365923e-01, 1.797693134862e+308, 4.2718e-01, 2.3551e-03, - 2DIAGNOSTIC, 3, -7.903384571126e-01, 1.797693134862e+308, 4.2937e-01, 2.1901e-03, - 2DIAGNOSTIC, 4, -7.931395404291e-01, 1.797693134862e+308, 4.3154e-01, 2.1701e-03, - 2DIAGNOSTIC, 5, -7.961105775481e-01, 1.797693134862e+308, 4.3371e-01, 2.1720e-03, - 2DIAGNOSTIC, 6, -8.000697067745e-01, 1.797693134862e+308, 4.3618e-01, 2.4691e-03, - 2DIAGNOSTIC, 7, -8.053003615229e-01, 1.797693134862e+308, 4.3885e-01, 2.6710e-03, - 2DIAGNOSTIC, 8, -8.073391358740e-01, 1.797693134862e+308, 4.4087e-01, 2.0230e-03, - 2DIAGNOSTIC, 9, -8.087501558466e-01, 1.797693134862e+308, 4.4314e-01, 2.2669e-03, - 2DIAGNOSTIC, 10, -8.112891972607e-01, 2.150300739311e-03, 4.4599e-01, 2.8460e-03, - 2DIAGNOSTIC, 11, -8.123012548756e-01, 1.923630600507e-03, 4.4850e-01, 2.5198e-03, - 2DIAGNOSTIC, 12, -8.123295793384e-01, 1.592713812546e-03, 4.5188e-01, 3.3710e-03, - 2DIAGNOSTIC, 13, -8.123067451144e-01, 1.228040248916e-03, 4.5406e-01, 2.1870e-03, - 2DIAGNOSTIC, 14, -8.128177380334e-01, 8.892220924067e-04, 4.5621e-01, 2.1431e-03, - 2DIAGNOSTIC, 15, -8.134278932427e-01, 5.976708197393e-04, 4.5857e-01, 2.3620e-03, - 2DIAGNOSTIC, 16, -8.141948611840e-01, 3.897003739504e-04, 4.6066e-01, 2.0871e-03, - 2DIAGNOSTIC, 17, -8.148349861033e-01, 2.925652972018e-04, 4.6272e-01, 2.0630e-03, - 2DIAGNOSTIC, 18, -8.159701848336e-01, 2.418476456067e-04, 4.6509e-01, 2.3730e-03, - 2DIAGNOSTIC, 19, -8.164170269342e-01, 2.072385766362e-04, 4.6749e-01, 2.3980e-03, - 2DIAGNOSTIC, 20, -8.165263637868e-01, 2.031337322501e-04, 4.7256e-01, 5.0740e-03, - 2DIAGNOSTIC, 21, -8.167043967576e-01, 2.007941882287e-04, 4.7466e-01, 2.0931e-03, - 2DIAGNOSTIC, 22, -8.167098907497e-01, 1.806533491081e-04, 4.7678e-01, 2.1219e-03, - 2DIAGNOSTIC, 23, -8.167232003654e-01, 1.451622778173e-04, 4.7892e-01, 2.1410e-03, - 2DIAGNOSTIC, 24, -8.167450989335e-01, 1.068894518019e-04, 4.8110e-01, 2.1799e-03, - 2DIAGNOSTIC, 25, -8.167796094870e-01, 7.086238744437e-05, 4.8328e-01, 2.1830e-03, - 2DIAGNOSTIC, 26, -8.168332732135e-01, 4.216537863888e-05, 4.8550e-01, 2.2221e-03, - 2DIAGNOSTIC, 27, -8.167152059559e-01, 1.820166739487e-05, 4.8797e-01, 2.4621e-03, - 2DIAGNOSTIC, 28, -8.167600923138e-01, 9.105920847519e-06, 4.9010e-01, 2.1350e-03, - 2DIAGNOSTIC, 29, -8.166309168164e-01, 3.697119844756e-06, 4.9230e-01, 2.1951e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.913132561576e-01, 1.797693134862e+308, 7.0788e-01, 2.1558e-01, - 2DIAGNOSTIC, 2, -6.919041321960e-01, 1.797693134862e+308, 7.2061e-01, 1.2733e-02, - 2DIAGNOSTIC, 3, -6.926463383263e-01, 1.797693134862e+308, 7.3479e-01, 1.4179e-02, - 2DIAGNOSTIC, 4, -6.929977706003e-01, 1.797693134862e+308, 7.4936e-01, 1.4565e-02, - 2DIAGNOSTIC, 5, -6.932942304614e-01, 1.797693134862e+308, 7.6226e-01, 1.2899e-02, - 2DIAGNOSTIC, 6, -6.934522085568e-01, 1.797693134862e+308, 7.7602e-01, 1.3760e-02, - 2DIAGNOSTIC, 7, -6.939231551515e-01, 1.797693134862e+308, 7.8874e-01, 1.2726e-02, - 2DIAGNOSTIC, 8, -6.944748562507e-01, 1.797693134862e+308, 8.0552e-01, 1.6776e-02, - 2DIAGNOSTIC, 9, -6.947054780172e-01, 1.797693134862e+308, 8.2772e-01, 2.2204e-02, - 2DIAGNOSTIC, 10, -6.947040162258e-01, 3.138943586378e-04, 8.3978e-01, 1.2056e-02, - 2DIAGNOSTIC, 11, -6.950194950448e-01, 2.540386238697e-04, 8.5186e-01, 1.2083e-02, - 2DIAGNOSTIC, 12, -6.954241320458e-01, 2.146864408279e-04, 8.6389e-01, 1.2027e-02, - 2DIAGNOSTIC, 13, -6.954530430903e-01, 1.858146196800e-04, 8.7778e-01, 1.3896e-02, - 2DIAGNOSTIC, 14, -6.955238204095e-01, 1.569017538251e-04, 8.8976e-01, 1.1980e-02, - 2DIAGNOSTIC, 15, -6.954968942259e-01, 1.254527769557e-04, 9.0354e-01, 1.3776e-02, - 2DIAGNOSTIC, 16, -6.956325830810e-01, 9.394825141780e-05, 9.1563e-01, 1.2088e-02, - 2DIAGNOSTIC, 17, -6.962319907773e-01, 8.288139037066e-05, 9.2983e-01, 1.4204e-02, - 2DIAGNOSTIC, 18, -6.962644075497e-01, 7.839955676091e-05, 9.7757e-01, 4.7738e-02, - 2DIAGNOSTIC, 19, -6.962643287000e-01, 7.263897841402e-05, 9.9051e-01, 1.2939e-02, - 2DIAGNOSTIC, 20, -6.962643457118e-01, 6.095885005563e-05, 1.0035e+00, 1.3000e-02, - 2DIAGNOSTIC, 21, -6.962643744960e-01, 5.073815028269e-05, 1.0168e+00, 1.3289e-02, - 2DIAGNOSTIC, 22, -6.962644231408e-01, 4.417157335786e-05, 1.0304e+00, 1.3629e-02, - 2DIAGNOSTIC, 23, -6.962645053440e-01, 3.464373017460e-05, 1.0431e+00, 1.2666e-02, - 2DIAGNOSTIC, 24, -6.962646441432e-01, 2.420844312798e-05, 1.0559e+00, 1.2844e-02, - 2DIAGNOSTIC, 25, -6.962648782134e-01, 1.208779400268e-05, 1.0691e+00, 1.3197e-02, - 2DIAGNOSTIC, 26, -6.962652726826e-01, 1.760539834895e-06, 1.0821e+00, 1.2987e-02, - 2DIAGNOSTIC, 27, -6.962659271214e-01, 1.223578699423e-06, 1.0957e+00, 1.3579e-02, - 2DIAGNOSTIC, 28, -6.962670070766e-01, 1.210008143578e-06, 1.1092e+00, 1.3481e-02, - 2DIAGNOSTIC, 29, -6.962688211436e-01, 1.214772171146e-06, 1.1229e+00, 1.3699e-02, - 2DIAGNOSTIC, 30, -6.962718206668e-01, 1.248908932938e-06, 1.1365e+00, 1.3619e-02, - 2DIAGNOSTIC, 31, -6.962566622200e-01, 1.062909620438e-06, 1.1506e+00, 1.4072e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.875734013141e-01, 1.797693134862e+308, 1.5812e+00, 4.3061e-01, - 2DIAGNOSTIC, 2, -5.887793025081e-01, 1.797693134862e+308, 1.6803e+00, 9.9095e-02, - 2DIAGNOSTIC, 3, -5.899288970325e-01, 1.797693134862e+308, 1.7775e+00, 9.7209e-02, - 2DIAGNOSTIC, 4, -5.906198288983e-01, 1.797693134862e+308, 1.8740e+00, 9.6498e-02, - 2DIAGNOSTIC, 5, -5.910614939081e-01, 1.797693134862e+308, 1.9724e+00, 9.8463e-02, - 2DIAGNOSTIC, 6, -5.916896672310e-01, 1.797693134862e+308, 2.0859e+00, 1.1348e-01, - 2DIAGNOSTIC, 7, -5.930442385321e-01, 1.797693134862e+308, 2.2106e+00, 1.2467e-01, - 2DIAGNOSTIC, 8, -5.932013647287e-01, 1.797693134862e+308, 2.3050e+00, 9.4383e-02, - 2DIAGNOSTIC, 9, -5.932821290353e-01, 1.797693134862e+308, 2.5394e+00, 2.3444e-01, - 2DIAGNOSTIC, 10, -5.932819881308e-01, 6.365231730301e-04, 2.6258e+00, 8.6395e-02, - 2DIAGNOSTIC, 11, -5.932815125038e-01, 4.626270020722e-04, 2.7210e+00, 9.5179e-02, - 2DIAGNOSTIC, 12, -5.932833433999e-01, 3.232604630337e-04, 2.8159e+00, 9.4882e-02, - 2DIAGNOSTIC, 13, -5.932824287561e-01, 2.184349239701e-04, 2.8982e+00, 8.2361e-02, - 2DIAGNOSTIC, 14, -5.932802185090e-01, 1.331497332377e-04, 2.9934e+00, 9.5181e-02, - 2DIAGNOSTIC, 15, -5.932793680283e-01, 6.144762920954e-05, 3.0788e+00, 8.5355e-02, - 2DIAGNOSTIC, 16, -5.932793267910e-01, 1.106559323004e-05, 3.1751e+00, 9.6280e-02, - 2DIAGNOSTIC, 17, -5.932796037140e-01, 3.941738888055e-06, 3.2577e+00, 8.2628e-02, - 2DIAGNOSTIC, 18, -5.932813421369e-01, 1.593925692864e-06, 3.3531e+00, 9.5383e-02, - 2DIAGNOSTIC, 19, -5.932766307594e-01, 1.431702489986e-06, 3.4580e+00, 1.0490e-01, - 2DIAGNOSTIC, 20, -5.932725887986e-01, 1.213074892752e-06, 3.5646e+00, 1.0665e-01, - Elapsed time (stage 1): 3.6884e+00 - - -Total elapsed time: 1.0356e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:43:27 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 09:43:28 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55f81b3f14f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 68.202, -106.063] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f81b3f6fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f04120b0010 - Container manages memory: true - Size: 7207200 - Capacity: 7207200 - - Moving image = Image (0x55f81b3f2850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 68.202, -106.063] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f81b3eff30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f040e9b3010 - Container manages memory: true - Size: 7207200 - Capacity: 7207200 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55f81b409b80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 68.202, -106.063] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f81b3f6550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f040b2b6010 - Container manages memory: true - Size: 7207200 - Capacity: 7207200 - - Moving image = Image (0x55f81b40ed70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 68.202, -106.063] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f81b40cc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f0407bb9010 - Container manages memory: true - Size: 7207200 - Capacity: 7207200 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55f81b410f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 68.202, -106.063] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f81b40f3a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f04044bc010 - Container manages memory: true - Size: 7207200 - Capacity: 7207200 - - Moving image = Image (0x55f81b411540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 225, 143] - Spacing: [1, 1, 1] - Origin: [108.551, 68.202, -106.063] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55f81b4114d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f0400dbf010 - Container manages memory: true - Size: 7207200 - Capacity: 7207200 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.105182851420e-01, 1.797693134862e+308, 1.8426e-01, 1.8425e-01, - 2DIAGNOSTIC, 2, -6.138446697817e-01, 1.797693134862e+308, 1.8657e-01, 2.3110e-03, - 2DIAGNOSTIC, 3, -6.189039902221e-01, 1.797693134862e+308, 1.8871e-01, 2.1391e-03, - 2DIAGNOSTIC, 4, -6.270567198259e-01, 1.797693134862e+308, 1.9073e-01, 2.0239e-03, - 2DIAGNOSTIC, 5, -6.357192084472e-01, 1.797693134862e+308, 1.9276e-01, 2.0330e-03, - 2DIAGNOSTIC, 6, -6.414747285283e-01, 1.797693134862e+308, 1.9507e-01, 2.3072e-03, - 2DIAGNOSTIC, 7, -6.426487258359e-01, 1.797693134862e+308, 1.9728e-01, 2.2109e-03, - 2DIAGNOSTIC, 8, -6.426992495568e-01, 1.797693134862e+308, 1.9926e-01, 1.9820e-03, - 2DIAGNOSTIC, 9, -6.426231562466e-01, 1.797693134862e+308, 2.0179e-01, 2.5291e-03, - 2DIAGNOSTIC, 10, -6.428440788189e-01, 3.709878837532e-03, 2.0477e-01, 2.9759e-03, - 2DIAGNOSTIC, 11, -6.434684997344e-01, 2.653222216877e-03, 2.0762e-01, 2.8548e-03, - 2DIAGNOSTIC, 12, -6.435466701366e-01, 1.666637839952e-03, 2.1059e-01, 2.9659e-03, - 2DIAGNOSTIC, 13, -6.435566387495e-01, 8.575007037025e-04, 2.1272e-01, 2.1300e-03, - 2DIAGNOSTIC, 14, -6.435689724701e-01, 3.441045065761e-04, 2.1522e-01, 2.4991e-03, - 2DIAGNOSTIC, 15, -6.436530614440e-01, 1.248927587656e-04, 2.1826e-01, 3.0429e-03, - 2DIAGNOSTIC, 16, -6.435884466621e-01, 7.969874488344e-05, 2.2053e-01, 2.2712e-03, - 2DIAGNOSTIC, 17, -6.435926140163e-01, 6.368547855802e-05, 2.2273e-01, 2.1992e-03, - 2DIAGNOSTIC, 18, -6.435989030271e-01, 4.554436327032e-05, 2.2518e-01, 2.4478e-03, - 2DIAGNOSTIC, 19, -6.440222941854e-01, 3.344439459115e-05, 2.2761e-01, 2.4290e-03, - 2DIAGNOSTIC, 20, -6.445311894306e-01, 3.520914559733e-05, 2.3058e-01, 2.9750e-03, - 2DIAGNOSTIC, 21, -6.445387174518e-01, 4.685580605191e-05, 2.3297e-01, 2.3880e-03, - 2DIAGNOSTIC, 22, -6.445438648189e-01, 5.517668111511e-05, 2.3515e-01, 2.1811e-03, - 2DIAGNOSTIC, 23, -6.444129352942e-01, 5.552228999308e-05, 2.3758e-01, 2.4309e-03, - 2DIAGNOSTIC, 24, -6.441536187305e-01, 4.603661123076e-05, 2.4086e-01, 3.2771e-03, - 2DIAGNOSTIC, 25, -6.440176416048e-01, 3.215666985731e-05, 2.4355e-01, 2.6851e-03, - 2DIAGNOSTIC, 26, -6.440176618941e-01, 1.540358134657e-05, 2.4571e-01, 2.1620e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.510405411917e-01, 1.797693134862e+308, 4.6639e-01, 2.2069e-01, - 2DIAGNOSTIC, 2, -5.516301610954e-01, 1.797693134862e+308, 4.8120e-01, 1.4813e-02, - 2DIAGNOSTIC, 3, -5.517296371793e-01, 1.797693134862e+308, 4.9575e-01, 1.4548e-02, - 2DIAGNOSTIC, 4, -5.517286748704e-01, 1.797693134862e+308, 5.0876e-01, 1.3010e-02, - 2DIAGNOSTIC, 5, -5.517825595887e-01, 1.797693134862e+308, 5.2383e-01, 1.5063e-02, - 2DIAGNOSTIC, 6, -5.517847447215e-01, 1.797693134862e+308, 5.3701e-01, 1.3185e-02, - 2DIAGNOSTIC, 7, -5.517941090064e-01, 1.797693134862e+308, 5.5054e-01, 1.3533e-02, - 2DIAGNOSTIC, 8, -5.518593605286e-01, 1.797693134862e+308, 5.6469e-01, 1.4146e-02, - 2DIAGNOSTIC, 9, -5.518765042238e-01, 1.797693134862e+308, 5.7923e-01, 1.4540e-02, - 2DIAGNOSTIC, 10, -5.518852559452e-01, 6.406637808327e-05, 5.9421e-01, 1.4979e-02, - 2DIAGNOSTIC, 11, -5.518585218808e-01, 2.656532394368e-05, 6.0959e-01, 1.5385e-02, - 2DIAGNOSTIC, 12, -5.518586236484e-01, 1.845451760428e-05, 6.2484e-01, 1.5243e-02, - 2DIAGNOSTIC, 13, -5.518424200198e-01, 1.343805352480e-05, 6.4036e-01, 1.5523e-02, - 2DIAGNOSTIC, 14, -5.518388332881e-01, 7.902640403332e-06, 6.5406e-01, 1.3695e-02, - 2DIAGNOSTIC, 15, -5.518269468618e-01, 4.064979398408e-06, 6.7033e-01, 1.6276e-02, - 2DIAGNOSTIC, 16, -5.518406616551e-01, 1.080850727045e-06, 6.8527e-01, 1.4939e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.640478970565e-01, 1.797693134862e+308, 1.0433e+00, 3.5804e-01, - 2DIAGNOSTIC, 2, -4.648509166569e-01, 1.797693134862e+308, 1.1405e+00, 9.7239e-02, - 2DIAGNOSTIC, 3, -4.652183451016e-01, 1.797693134862e+308, 1.2590e+00, 1.1850e-01, - 2DIAGNOSTIC, 4, -4.652719503746e-01, 1.797693134862e+308, 1.3753e+00, 1.1626e-01, - 2DIAGNOSTIC, 5, -4.652764369127e-01, 1.797693134862e+308, 1.4840e+00, 1.0867e-01, - 2DIAGNOSTIC, 6, -4.652747926159e-01, 1.797693134862e+308, 1.5796e+00, 9.5627e-02, - 2DIAGNOSTIC, 7, -4.652732639569e-01, 1.797693134862e+308, 1.6584e+00, 7.8742e-02, - 2DIAGNOSTIC, 8, -4.652760556062e-01, 1.797693134862e+308, 1.7583e+00, 9.9919e-02, - 2DIAGNOSTIC, 9, -4.652837859867e-01, 1.797693134862e+308, 1.9277e+00, 1.6944e-01, - 2DIAGNOSTIC, 10, -4.652842893568e-01, 1.043366879520e-04, 2.0369e+00, 1.0919e-01, - 2DIAGNOSTIC, 11, -4.652846606090e-01, 3.062468292905e-05, 2.1301e+00, 9.3186e-02, - 2DIAGNOSTIC, 12, -4.652810036105e-01, 6.925509377351e-06, 2.2213e+00, 9.1185e-02, - 2DIAGNOSTIC, 13, -4.652819434208e-01, 3.732429995226e-06, 2.3386e+00, 1.1734e-01, - 2DIAGNOSTIC, 14, -4.652808012287e-01, 3.151945687285e-06, 2.4308e+00, 9.2153e-02, - 2DIAGNOSTIC, 15, -4.652796584000e-01, 2.705616663948e-06, 2.5201e+00, 8.9357e-02, - 2DIAGNOSTIC, 16, -4.652771603423e-01, 2.112620613448e-06, 2.5994e+00, 7.9260e-02, - 2DIAGNOSTIC, 17, -4.652776853604e-01, 1.546123484096e-06, 2.7035e+00, 1.0414e-01, - 2DIAGNOSTIC, 18, -4.652784345723e-01, 1.183631132655e-06, 2.7987e+00, 9.5234e-02, - 2DIAGNOSTIC, 19, -4.652782870664e-01, 1.153859178801e-06, 2.8928e+00, 9.4053e-02, - 2DIAGNOSTIC, 20, -4.652761675203e-01, 1.126549630373e-06, 3.0118e+00, 1.1904e-01, - 2DIAGNOSTIC, 21, -4.652757014931e-01, 1.148530490470e-06, 3.1204e+00, 1.0855e-01, - 2DIAGNOSTIC, 22, -4.652724241870e-01, 1.008051449071e-06, 3.2150e+00, 9.4620e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.014938270061e-01, 1.797693134862e+308, 4.4407e+00, 1.2257e+00, - 2DIAGNOSTIC, 2, -4.017463166921e-01, 1.797693134862e+308, 5.7233e+00, 1.2825e+00, - 2DIAGNOSTIC, 3, -4.017462904653e-01, 1.797693134862e+308, 6.2522e+00, 5.2890e-01, - 2DIAGNOSTIC, 4, -4.017464008559e-01, 1.797693134862e+308, 7.0232e+00, 7.7106e-01, - 2DIAGNOSTIC, 5, -4.017465287998e-01, 1.797693134862e+308, 7.5829e+00, 5.5966e-01, - 2DIAGNOSTIC, 6, -4.017463829701e-01, 1.797693134862e+308, 8.2008e+00, 6.1793e-01, - 2DIAGNOSTIC, 7, -4.017464147508e-01, 1.797693134862e+308, 8.8153e+00, 6.1447e-01, - 2DIAGNOSTIC, 8, -4.017462330755e-01, 1.797693134862e+308, 9.4147e+00, 5.9942e-01, - 2DIAGNOSTIC, 9, -4.017462508055e-01, 1.797693134862e+308, 9.9634e+00, 5.4873e-01, - 2DIAGNOSTIC, 10, -4.017461187234e-01, 2.102221395311e-05, 1.0578e+01, 6.1426e-01, - 2DIAGNOSTIC, 11, -4.017459855987e-01, 2.845717757091e-06, 1.1159e+01, 5.8131e-01, - 2DIAGNOSTIC, 12, -4.017456593464e-01, 2.569986580464e-06, 1.1815e+01, 6.5573e-01, - 2DIAGNOSTIC, 13, -4.017455758544e-01, 2.338260397181e-06, 1.2367e+01, 5.5230e-01, - 2DIAGNOSTIC, 14, -4.017453885545e-01, 2.145241882093e-06, 1.2914e+01, 5.4724e-01, - 2DIAGNOSTIC, 15, -4.017452771899e-01, 1.990491775239e-06, 1.3472e+01, 5.5751e-01, - 2DIAGNOSTIC, 16, -4.017449957432e-01, 1.848170766316e-06, 1.4044e+01, 5.7199e-01, - 2DIAGNOSTIC, 17, -4.017447505512e-01, 1.727155046212e-06, 1.4595e+01, 5.5148e-01, - 2DIAGNOSTIC, 18, -4.017446926418e-01, 1.623514333172e-06, 1.5213e+01, 6.1796e-01, - 2DIAGNOSTIC, 19, -4.017449316350e-01, 1.553472951554e-06, 1.5827e+01, 6.1330e-01, - 2DIAGNOSTIC, 20, -4.017446947889e-01, 1.488278869068e-06, 1.6353e+01, 5.2676e-01, - 2DIAGNOSTIC, 21, -4.017448983868e-01, 1.441871159039e-06, 1.7148e+01, 7.9426e-01, - 2DIAGNOSTIC, 22, -4.017446537988e-01, 1.388101780929e-06, 1.7752e+01, 6.0480e-01, - 2DIAGNOSTIC, 23, -4.017447008124e-01, 1.343483065859e-06, 1.8279e+01, 5.2643e-01, - 2DIAGNOSTIC, 24, -4.017444443179e-01, 1.292973938603e-06, 1.8742e+01, 4.6283e-01, - 2DIAGNOSTIC, 25, -4.017442162802e-01, 1.240245231030e-06, 1.9361e+01, 6.1910e-01, - 2DIAGNOSTIC, 26, -4.017444165020e-01, 1.192737478076e-06, 1.9985e+01, 6.2397e-01, - 2DIAGNOSTIC, 27, -4.017443284353e-01, 1.142682755383e-06, 2.0533e+01, 5.4819e-01, - 2DIAGNOSTIC, 28, -4.017442821829e-01, 1.096815733105e-06, 2.1221e+01, 6.8788e-01, - 2DIAGNOSTIC, 29, -4.017443380132e-01, 1.065349872001e-06, 2.1857e+01, 6.3600e-01, - 2DIAGNOSTIC, 30, -4.017440811341e-01, 1.027145574248e-06, 2.2473e+01, 6.1621e-01, - 2DIAGNOSTIC, 31, -4.017441393694e-01, 1.000717925831e-06, 2.3024e+01, 5.5124e-01, - Elapsed time (stage 0): 2.3403e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.364130492927e-01, 1.797693134862e+308, 1.6562e-01, 1.6562e-01, - 2DIAGNOSTIC, 2, -6.382402671279e-01, 1.797693134862e+308, 1.6766e-01, 2.0440e-03, - 2DIAGNOSTIC, 3, -6.407205947376e-01, 1.797693134862e+308, 1.6965e-01, 1.9829e-03, - 2DIAGNOSTIC, 4, -6.441882506921e-01, 1.797693134862e+308, 1.7165e-01, 2.0020e-03, - 2DIAGNOSTIC, 5, -6.476035426516e-01, 1.797693134862e+308, 1.7357e-01, 1.9219e-03, - 2DIAGNOSTIC, 6, -6.503651481004e-01, 1.797693134862e+308, 1.7553e-01, 1.9579e-03, - 2DIAGNOSTIC, 7, -6.522676351546e-01, 1.797693134862e+308, 1.7800e-01, 2.4700e-03, - 2DIAGNOSTIC, 8, -6.529478490790e-01, 1.797693134862e+308, 1.8096e-01, 2.9650e-03, - 2DIAGNOSTIC, 9, -6.529967711388e-01, 1.797693134862e+308, 1.8290e-01, 1.9350e-03, - 2DIAGNOSTIC, 10, -6.531262571444e-01, 1.866810290228e-03, 1.8516e-01, 2.2640e-03, - 2DIAGNOSTIC, 11, -6.532947814967e-01, 1.395030215316e-03, 1.8733e-01, 2.1670e-03, - 2DIAGNOSTIC, 12, -6.534833369278e-01, 9.506853293833e-04, 1.8944e-01, 2.1119e-03, - 2DIAGNOSTIC, 13, -6.536740584371e-01, 5.786223789028e-04, 1.9155e-01, 2.1071e-03, - 2DIAGNOSTIC, 14, -6.538982320643e-01, 3.221344995060e-04, 1.9372e-01, 2.1679e-03, - 2DIAGNOSTIC, 15, -6.541854864246e-01, 1.775401263592e-04, 1.9590e-01, 2.1801e-03, - 2DIAGNOSTIC, 16, -6.552092220044e-01, 1.371661550322e-04, 1.9863e-01, 2.7339e-03, - 2DIAGNOSTIC, 17, -6.553756271371e-01, 1.412460148451e-04, 2.0159e-01, 2.9631e-03, - 2DIAGNOSTIC, 18, -6.554581757325e-01, 1.507751939425e-04, 2.0378e-01, 2.1820e-03, - 2DIAGNOSTIC, 19, -6.555319231746e-01, 1.485918625404e-04, 2.0592e-01, 2.1420e-03, - 2DIAGNOSTIC, 20, -6.565135296559e-01, 1.570724255508e-04, 2.0865e-01, 2.7311e-03, - 2DIAGNOSTIC, 21, -6.566439816962e-01, 1.555548853872e-04, 2.1091e-01, 2.2650e-03, - 2DIAGNOSTIC, 22, -6.578236772759e-01, 1.670091952802e-04, 2.1470e-01, 3.7899e-03, - 2DIAGNOSTIC, 23, -6.578274387803e-01, 1.655736103365e-04, 2.1688e-01, 2.1729e-03, - 2DIAGNOSTIC, 24, -6.578903578432e-01, 1.544125500948e-04, 2.1941e-01, 2.5339e-03, - 2DIAGNOSTIC, 25, -6.580466475829e-01, 1.370632005171e-04, 2.2166e-01, 2.2531e-03, - 2DIAGNOSTIC, 26, -6.581038222158e-01, 1.261276645967e-04, 2.2421e-01, 2.5508e-03, - 2DIAGNOSTIC, 27, -6.581169093783e-01, 1.070698389098e-04, 2.2676e-01, 2.5489e-03, - 2DIAGNOSTIC, 28, -6.580684453974e-01, 8.008577211966e-05, 2.2934e-01, 2.5749e-03, - 2DIAGNOSTIC, 29, -6.580347048675e-01, 4.802657695688e-05, 2.3188e-01, 2.5380e-03, - 2DIAGNOSTIC, 30, -6.579047839035e-01, 2.615589662042e-05, 2.3410e-01, 2.2252e-03, - 2DIAGNOSTIC, 31, -6.580178888991e-01, 6.302988771432e-06, 2.3634e-01, 2.2371e-03, - 2DIAGNOSTIC, 32, -6.584296270391e-01, 8.798223626712e-06, 2.3886e-01, 2.5210e-03, - 2DIAGNOSTIC, 33, -6.589762357370e-01, 1.751319462849e-05, 2.4197e-01, 3.1121e-03, - 2DIAGNOSTIC, 34, -6.590457685521e-01, 2.569196379878e-05, 2.4479e-01, 2.8231e-03, - 2DIAGNOSTIC, 35, -6.589392973860e-01, 3.180307099354e-05, 2.4737e-01, 2.5711e-03, - 2DIAGNOSTIC, 36, -6.589032976369e-01, 3.499141205704e-05, 2.4989e-01, 2.5229e-03, - 2DIAGNOSTIC, 37, -6.585536914563e-01, 3.069694783000e-05, 2.5215e-01, 2.2640e-03, - 2DIAGNOSTIC, 38, -6.585271557529e-01, 2.290971146026e-05, 2.5437e-01, 2.2159e-03, - 2DIAGNOSTIC, 39, -6.587029973664e-01, 1.505879851404e-05, 2.5688e-01, 2.5129e-03, - 2DIAGNOSTIC, 40, -6.588550160055e-01, 6.498756869942e-06, 2.5921e-01, 2.3260e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.464229050396e-01, 1.797693134862e+308, 4.5426e-01, 1.9505e-01, - 2DIAGNOSTIC, 2, -5.472588964078e-01, 1.797693134862e+308, 4.6901e-01, 1.4751e-02, - 2DIAGNOSTIC, 3, -5.479547070656e-01, 1.797693134862e+308, 4.8353e-01, 1.4522e-02, - 2DIAGNOSTIC, 4, -5.486560914453e-01, 1.797693134862e+308, 4.9863e-01, 1.5102e-02, - 2DIAGNOSTIC, 5, -5.493802718480e-01, 1.797693134862e+308, 5.1299e-01, 1.4353e-02, - 2DIAGNOSTIC, 6, -5.505511797013e-01, 1.797693134862e+308, 5.2743e-01, 1.4440e-02, - 2DIAGNOSTIC, 7, -5.530706589781e-01, 1.797693134862e+308, 5.4794e-01, 2.0516e-02, - 2DIAGNOSTIC, 8, -5.535554548892e-01, 1.797693134862e+308, 5.6245e-01, 1.4509e-02, - 2DIAGNOSTIC, 9, -5.538763997768e-01, 1.797693134862e+308, 5.7670e-01, 1.4253e-02, - 2DIAGNOSTIC, 10, -5.543421995362e-01, 1.029890067057e-03, 5.9630e-01, 1.9601e-02, - 2DIAGNOSTIC, 11, -5.545120345938e-01, 8.876668246655e-04, 6.1571e-01, 1.9408e-02, - 2DIAGNOSTIC, 12, -5.545257583810e-01, 7.246920765428e-04, 6.2964e-01, 1.3926e-02, - 2DIAGNOSTIC, 13, -5.547056818479e-01, 5.563991255972e-04, 6.4355e-01, 1.3915e-02, - 2DIAGNOSTIC, 14, -5.548342791304e-01, 3.933779754437e-04, 6.5751e-01, 1.3959e-02, - 2DIAGNOSTIC, 15, -5.549322103606e-01, 2.445229528710e-04, 6.7153e-01, 1.4020e-02, - 2DIAGNOSTIC, 16, -5.550707758573e-01, 1.322147755600e-04, 6.8758e-01, 1.6046e-02, - 2DIAGNOSTIC, 17, -5.551095055289e-01, 9.850094007251e-05, 7.0946e-01, 2.1883e-02, - 2DIAGNOSTIC, 18, -5.550969890242e-01, 7.306263728998e-05, 7.2609e-01, 1.6628e-02, - 2DIAGNOSTIC, 19, -5.551339684339e-01, 5.309518789413e-05, 7.4059e-01, 1.4496e-02, - 2DIAGNOSTIC, 20, -5.551721034007e-01, 4.318450096213e-05, 7.5400e-01, 1.3411e-02, - 2DIAGNOSTIC, 21, -5.551885840975e-01, 3.491379363622e-05, 7.6744e-01, 1.3447e-02, - 2DIAGNOSTIC, 22, -5.552117923587e-01, 2.508405796431e-05, 7.8311e-01, 1.5666e-02, - 2DIAGNOSTIC, 23, -5.552288341132e-01, 1.829901907531e-05, 7.9782e-01, 1.4711e-02, - 2DIAGNOSTIC, 24, -5.552207082800e-01, 1.305090926546e-05, 8.1384e-01, 1.6016e-02, - 2DIAGNOSTIC, 25, -5.552425194330e-01, 9.507572020520e-06, 8.3374e-01, 1.9901e-02, - 2DIAGNOSTIC, 26, -5.552311468833e-01, 7.944866696870e-06, 8.4791e-01, 1.4169e-02, - 2DIAGNOSTIC, 27, -5.552186531685e-01, 6.390742025818e-06, 8.6216e-01, 1.4257e-02, - 2DIAGNOSTIC, 28, -5.552220213534e-01, 4.287128004404e-06, 8.7597e-01, 1.3809e-02, - 2DIAGNOSTIC, 29, -5.552242782916e-01, 2.709612296224e-06, 8.9517e-01, 1.9199e-02, - 2DIAGNOSTIC, 30, -5.552250941840e-01, 1.744583025431e-06, 9.0898e-01, 1.3808e-02, - 2DIAGNOSTIC, 31, -5.552255426430e-01, 1.051651590651e-06, 9.2280e-01, 1.3818e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.639500048127e-01, 1.797693134862e+308, 1.2618e+00, 3.3896e-01, - 2DIAGNOSTIC, 2, -4.648999429623e-01, 1.797693134862e+308, 1.3603e+00, 9.8591e-02, - 2DIAGNOSTIC, 3, -4.656666848912e-01, 1.797693134862e+308, 1.4580e+00, 9.7651e-02, - 2DIAGNOSTIC, 4, -4.659957027877e-01, 1.797693134862e+308, 1.5578e+00, 9.9781e-02, - 2DIAGNOSTIC, 5, -4.661819810165e-01, 1.797693134862e+308, 1.6563e+00, 9.8563e-02, - 2DIAGNOSTIC, 6, -4.664055418235e-01, 1.797693134862e+308, 1.7550e+00, 9.8626e-02, - 2DIAGNOSTIC, 7, -4.665847699657e-01, 1.797693134862e+308, 1.8932e+00, 1.3818e-01, - 2DIAGNOSTIC, 8, -4.666539886724e-01, 1.797693134862e+308, 1.9959e+00, 1.0273e-01, - 2DIAGNOSTIC, 9, -4.666996256492e-01, 1.797693134862e+308, 2.1069e+00, 1.1098e-01, - 2DIAGNOSTIC, 10, -4.667956018459e-01, 3.339338462765e-04, 2.2316e+00, 1.2471e-01, - 2DIAGNOSTIC, 11, -4.668356596050e-01, 2.061351029667e-04, 2.3420e+00, 1.1041e-01, - 2DIAGNOSTIC, 12, -4.668544455130e-01, 1.297364866315e-04, 2.4448e+00, 1.0279e-01, - 2DIAGNOSTIC, 13, -4.668590289796e-01, 8.961804432711e-05, 2.5531e+00, 1.0828e-01, - 2DIAGNOSTIC, 14, -4.668636810655e-01, 6.183473456474e-05, 2.6820e+00, 1.2898e-01, - 2DIAGNOSTIC, 15, -4.668658237650e-01, 3.978374919061e-05, 2.7758e+00, 9.3734e-02, - 2DIAGNOSTIC, 16, -4.668678182178e-01, 2.545601905177e-05, 2.8741e+00, 9.8280e-02, - 2DIAGNOSTIC, 17, -4.668686088772e-01, 1.709818730749e-05, 2.9721e+00, 9.8030e-02, - 2DIAGNOSTIC, 18, -4.668702516043e-01, 1.067527201863e-05, 3.1112e+00, 1.3909e-01, - 2DIAGNOSTIC, 19, -4.668704026383e-01, 5.505942836131e-06, 3.2119e+00, 1.0075e-01, - 2DIAGNOSTIC, 20, -4.668704857375e-01, 3.397974318954e-06, 3.3117e+00, 9.9736e-02, - 2DIAGNOSTIC, 21, -4.668706255113e-01, 2.476681970599e-06, 3.4112e+00, 9.9552e-02, - 2DIAGNOSTIC, 22, -4.668716342581e-01, 2.095862468146e-06, 3.7505e+00, 3.3928e-01, - 2DIAGNOSTIC, 23, -4.668716342525e-01, 1.805409499386e-06, 4.0915e+00, 3.4105e-01, - 2DIAGNOSTIC, 24, -4.668716342525e-01, 1.617305794809e-06, 4.2040e+00, 1.1248e-01, - 2DIAGNOSTIC, 25, -4.668716342525e-01, 1.468999581582e-06, 4.3208e+00, 1.1676e-01, - 2DIAGNOSTIC, 26, -4.668716342525e-01, 1.360282387425e-06, 4.4326e+00, 1.1184e-01, - 2DIAGNOSTIC, 27, -4.668716342525e-01, 1.263274162326e-06, 4.5384e+00, 1.0573e-01, - 2DIAGNOSTIC, 28, -4.668716342525e-01, 1.200883822314e-06, 4.6632e+00, 1.2480e-01, - 2DIAGNOSTIC, 29, -4.668716342525e-01, 1.140255172220e-06, 4.7735e+00, 1.1035e-01, - 2DIAGNOSTIC, 30, -4.668716342525e-01, 1.081492786201e-06, 4.8855e+00, 1.1204e-01, - 2DIAGNOSTIC, 31, -4.668716342525e-01, 1.026763056959e-06, 4.9951e+00, 1.0954e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.010827082902e-01, 1.797693134862e+308, 6.2514e+00, 1.2563e+00, - 2DIAGNOSTIC, 2, -4.013720325502e-01, 1.797693134862e+308, 6.8531e+00, 6.0167e-01, - 2DIAGNOSTIC, 3, -4.014815563093e-01, 1.797693134862e+308, 7.4455e+00, 5.9247e-01, - 2DIAGNOSTIC, 4, -4.015970440744e-01, 1.797693134862e+308, 8.3110e+00, 8.6551e-01, - 2DIAGNOSTIC, 5, -4.016216190841e-01, 1.797693134862e+308, 8.9221e+00, 6.1104e-01, - 2DIAGNOSTIC, 6, -4.016351644173e-01, 1.797693134862e+308, 9.5226e+00, 6.0053e-01, - 2DIAGNOSTIC, 7, -4.016785103972e-01, 1.797693134862e+308, 1.0860e+01, 1.3377e+00, - 2DIAGNOSTIC, 8, -4.016785164513e-01, 1.797693134862e+308, 1.1631e+01, 7.7110e-01, - 2DIAGNOSTIC, 9, -4.016785166734e-01, 1.797693134862e+308, 1.2532e+01, 9.0029e-01, - 2DIAGNOSTIC, 10, -4.016785166879e-01, 7.694040600893e-05, 1.4514e+01, 1.9819e+00, - 2DIAGNOSTIC, 11, -4.016785166879e-01, 3.953322231222e-05, 1.5225e+01, 7.1173e-01, - 2DIAGNOSTIC, 12, -4.016785166879e-01, 2.201534952766e-05, 1.5975e+01, 7.4939e-01, - 2DIAGNOSTIC, 13, -4.016785166879e-01, 1.124637598612e-05, 1.6838e+01, 8.6332e-01, - 2DIAGNOSTIC, 14, -4.016785166879e-01, 7.063429772178e-06, 1.7529e+01, 6.9068e-01, - 2DIAGNOSTIC, 15, -4.016785166879e-01, 4.166762208130e-06, 1.8204e+01, 6.7511e-01, - 2DIAGNOSTIC, 16, -4.016785166879e-01, 1.988804361489e-06, 1.9034e+01, 8.3001e-01, - 2DIAGNOSTIC, 17, -4.016785166879e-01, 1.871533395710e-06, 1.9709e+01, 6.7478e-01, - 2DIAGNOSTIC, 18, -4.016785166879e-01, 1.767531662818e-06, 2.0318e+01, 6.0889e-01, - 2DIAGNOSTIC, 19, -4.016785166879e-01, 1.674487525451e-06, 2.0921e+01, 6.0312e-01, - 2DIAGNOSTIC, 20, -4.016785166879e-01, 1.590749796894e-06, 2.1748e+01, 8.2748e-01, - 2DIAGNOSTIC, 21, -4.016785166879e-01, 1.514988301407e-06, 2.2435e+01, 6.8691e-01, - 2DIAGNOSTIC, 22, -4.016785166879e-01, 1.446115213077e-06, 2.3098e+01, 6.6263e-01, - 2DIAGNOSTIC, 23, -4.016785166879e-01, 1.383231919512e-06, 2.3770e+01, 6.7251e-01, - 2DIAGNOSTIC, 24, -4.016785166879e-01, 1.325589596757e-06, 2.4601e+01, 8.3080e-01, - 2DIAGNOSTIC, 25, -4.016785166879e-01, 1.272559248235e-06, 2.5271e+01, 6.6948e-01, - 2DIAGNOSTIC, 26, -4.016785166879e-01, 1.223608657640e-06, 2.5940e+01, 6.6986e-01, - 2DIAGNOSTIC, 27, -4.016785166879e-01, 1.178284465053e-06, 2.6577e+01, 6.3693e-01, - 2DIAGNOSTIC, 28, -4.016785166879e-01, 1.136198083583e-06, 2.7328e+01, 7.5112e-01, - 2DIAGNOSTIC, 29, -4.016785166879e-01, 1.097014530396e-06, 2.7959e+01, 6.3086e-01, - 2DIAGNOSTIC, 30, -4.016785166879e-01, 1.060443491796e-06, 2.8588e+01, 6.2828e-01, - 2DIAGNOSTIC, 31, -4.016785166879e-01, 1.026232117785e-06, 2.9258e+01, 6.7053e-01, - Elapsed time (stage 1): 2.9640e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.101367660484e-01, 1.797693134862e+308, 2.2132e-01, 2.2132e-01, - 1DIAGNOSTIC, 2, -9.199071010654e-01, 1.797693134862e+308, 3.1731e-01, 9.5984e-02, - 1DIAGNOSTIC, 3, -9.274026376889e-01, 1.797693134862e+308, 4.1222e-01, 9.4908e-02, - 1DIAGNOSTIC, 4, -9.336856334490e-01, 1.797693134862e+308, 5.0872e-01, 9.6500e-02, - 1DIAGNOSTIC, 5, -9.390201993514e-01, 1.797693134862e+308, 6.0217e-01, 9.3450e-02, - 1DIAGNOSTIC, 6, -9.430252032070e-01, 1.797693134862e+308, 6.9769e-01, 9.5528e-02, - 1DIAGNOSTIC, 7, -9.466846055920e-01, 1.797693134862e+308, 7.9177e-01, 9.4074e-02, - 1DIAGNOSTIC, 8, -9.499215896784e-01, 1.797693134862e+308, 8.8594e-01, 9.4172e-02, - 1DIAGNOSTIC, 9, -9.524546661821e-01, 1.797693134862e+308, 9.7806e-01, 9.2117e-02, - 1DIAGNOSTIC, 10, -9.544965129084e-01, 2.892787456442e-03, 1.0744e+00, 9.6297e-02, - 1DIAGNOSTIC, 11, -9.563360445891e-01, 2.174970095164e-03, 1.1715e+00, 9.7152e-02, - 1DIAGNOSTIC, 12, -9.576252693790e-01, 1.659319625450e-03, 1.2668e+00, 9.5293e-02, - 1DIAGNOSTIC, 13, -9.582482860897e-01, 1.260695397642e-03, 1.3636e+00, 9.6797e-02, - 1DIAGNOSTIC, 14, -9.580262248805e-01, 9.344968243959e-04, 1.4633e+00, 9.9680e-02, - 1DIAGNOSTIC, 15, -9.586793359214e-01, 6.868313360710e-04, 1.5604e+00, 9.7104e-02, - 1DIAGNOSTIC, 16, -9.586538485215e-01, 4.811272860816e-04, 1.6601e+00, 9.9742e-02, - 1DIAGNOSTIC, 17, -9.591300782211e-01, 3.279755820843e-04, 1.7525e+00, 9.2384e-02, - 1DIAGNOSTIC, 18, -9.590279441540e-01, 2.136440024829e-04, 1.8453e+00, 9.2835e-02, - 1DIAGNOSTIC, 19, -9.593364891593e-01, 1.366083157254e-04, 1.9444e+00, 9.9046e-02, - 1DIAGNOSTIC, 20, -9.592517715883e-01, 8.358404212334e-05, 2.0372e+00, 9.2777e-02, - 1DIAGNOSTIC, 21, -9.594955422429e-01, 5.729390555092e-05, 2.1323e+00, 9.5185e-02, - 1DIAGNOSTIC, 22, -9.594207166732e-01, 4.446859807573e-05, 2.2328e+00, 1.0042e-01, - 1DIAGNOSTIC, 23, -9.595658723525e-01, 3.895662449618e-05, 2.3313e+00, 9.8537e-02, - 1DIAGNOSTIC, 24, -9.595014938327e-01, 2.660873672760e-05, 2.4303e+00, 9.9000e-02, - 1DIAGNOSTIC, 25, -9.596568675683e-01, 2.263554920132e-05, 2.5274e+00, 9.7115e-02, - 1DIAGNOSTIC, 26, -9.595905139489e-01, 1.572110572587e-05, 2.6303e+00, 1.0292e-01, - 1DIAGNOSTIC, 27, -9.596939681404e-01, 1.446161461887e-05, 2.7389e+00, 1.0861e-01, - 1DIAGNOSTIC, 28, -9.596401474598e-01, 1.028096264048e-05, 2.8403e+00, 1.0135e-01, - 1DIAGNOSTIC, 29, -9.597227398667e-01, 9.616453490166e-06, 2.9359e+00, 9.5619e-02, - 1DIAGNOSTIC, 30, -9.596821594392e-01, 6.855811676101e-06, 3.0315e+00, 9.5540e-02, - 1DIAGNOSTIC, 31, -9.597469574139e-01, 6.739260348734e-06, 3.1272e+00, 9.5744e-02, - 1DIAGNOSTIC, 32, -9.597179905164e-01, 5.077917397490e-06, 3.2228e+00, 9.5610e-02, - 1DIAGNOSTIC, 33, -9.597765671011e-01, 5.007639710092e-06, 3.3150e+00, 9.2149e-02, - 1DIAGNOSTIC, 34, -9.597520714343e-01, 3.729809868298e-06, 3.4140e+00, 9.9007e-02, - 1DIAGNOSTIC, 35, -9.597991510434e-01, 4.014129423309e-06, 3.5110e+00, 9.7067e-02, - 1DIAGNOSTIC, 36, -9.597788993712e-01, 3.239270277268e-06, 3.6124e+00, 1.0136e-01, - 1DIAGNOSTIC, 37, -9.598211818338e-01, 3.478512699641e-06, 3.7069e+00, 9.4498e-02, - 1DIAGNOSTIC, 38, -9.597961832710e-01, 2.812376540547e-06, 3.8034e+00, 9.6516e-02, - 1DIAGNOSTIC, 39, -9.598369606606e-01, 2.953780535921e-06, 3.8973e+00, 9.3928e-02, - 1DIAGNOSTIC, 40, -9.598079369382e-01, 2.346442391461e-06, 3.9946e+00, 9.7270e-02, - 1DIAGNOSTIC, 41, -9.598431101805e-01, 2.362703678524e-06, 4.0898e+00, 9.5237e-02, - 1DIAGNOSTIC, 42, -9.598054605592e-01, 1.737391225904e-06, 4.1847e+00, 9.4814e-02, - 1DIAGNOSTIC, 43, -9.598335696686e-01, 1.662911839555e-06, 4.2797e+00, 9.5014e-02, - 1DIAGNOSTIC, 44, -9.597904833679e-01, 1.032612079743e-06, 4.3747e+00, 9.5055e-02, - 1DIAGNOSTIC, 45, -9.598132815675e-01, 8.758053058819e-07, 4.4697e+00, 9.4974e-02, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.232502108416e-01, 1.797693134862e+308, 5.2613e+00, 7.9162e-01, - 1DIAGNOSTIC, 2, -9.269481738913e-01, 1.797693134862e+308, 5.9202e+00, 6.5883e-01, - 1DIAGNOSTIC, 3, -9.311351010051e-01, 1.797693134862e+308, 6.5904e+00, 6.7022e-01, - 1DIAGNOSTIC, 4, -9.340608300840e-01, 1.797693134862e+308, 7.2534e+00, 6.6307e-01, - 1DIAGNOSTIC, 5, -9.363090583705e-01, 1.797693134862e+308, 7.9139e+00, 6.6043e-01, - 1DIAGNOSTIC, 6, -9.380640599757e-01, 1.797693134862e+308, 8.5820e+00, 6.6811e-01, - 1DIAGNOSTIC, 7, -9.394964217221e-01, 1.797693134862e+308, 9.2442e+00, 6.6223e-01, - 1DIAGNOSTIC, 8, -9.406085657020e-01, 1.797693134862e+308, 9.8961e+00, 6.5194e-01, - 1DIAGNOSTIC, 9, -9.414726458910e-01, 1.797693134862e+308, 1.0557e+01, 6.6044e-01, - 1DIAGNOSTIC, 10, -9.422362935118e-01, 1.253644034814e-03, 1.1228e+01, 6.7159e-01, - 1DIAGNOSTIC, 11, -9.429281508469e-01, 9.172547331510e-04, 1.1891e+01, 6.6330e-01, - 1DIAGNOSTIC, 12, -9.435616734680e-01, 6.628537627467e-04, 1.2540e+01, 6.4844e-01, - 1DIAGNOSTIC, 13, -9.441063251739e-01, 4.973994863689e-04, 1.3193e+01, 6.5341e-01, - 1DIAGNOSTIC, 14, -9.445961908888e-01, 3.839116294512e-04, 1.3852e+01, 6.5878e-01, - 1DIAGNOSTIC, 15, -9.450362819974e-01, 3.044939220893e-04, 1.4499e+01, 6.4673e-01, - 1DIAGNOSTIC, 16, -9.454374243962e-01, 2.476156274513e-04, 1.5155e+01, 6.5664e-01, - 1DIAGNOSTIC, 17, -9.458039829080e-01, 2.064907958166e-04, 1.5815e+01, 6.5983e-01, - 1DIAGNOSTIC, 18, -9.461408656325e-01, 1.751489792027e-04, 1.6458e+01, 6.4222e-01, - 1DIAGNOSTIC, 19, -9.464472205428e-01, 1.494732297817e-04, 1.7105e+01, 6.4783e-01, - 1DIAGNOSTIC, 20, -9.467301979689e-01, 1.282768411313e-04, 1.7746e+01, 6.4032e-01, - 1DIAGNOSTIC, 21, -9.469920674331e-01, 1.108603344642e-04, 1.8410e+01, 6.6408e-01, - 1DIAGNOSTIC, 22, -9.472344272883e-01, 9.671233618100e-05, 1.9085e+01, 6.7480e-01, - 1DIAGNOSTIC, 23, -9.474598681100e-01, 8.487730509820e-05, 1.9751e+01, 6.6690e-01, - 1DIAGNOSTIC, 24, -9.476690205390e-01, 7.489579011280e-05, 2.0418e+01, 6.6642e-01, - 1DIAGNOSTIC, 25, -9.478705408358e-01, 6.646307999610e-05, 2.1085e+01, 6.6735e-01, - 1DIAGNOSTIC, 26, -9.480501050485e-01, 5.920682021233e-05, 2.1724e+01, 6.3891e-01, - 1DIAGNOSTIC, 27, -9.482210992551e-01, 5.296398474628e-05, 2.2379e+01, 6.5516e-01, - 1DIAGNOSTIC, 28, -9.483727414695e-01, 4.748365924792e-05, 2.3050e+01, 6.7068e-01, - 1DIAGNOSTIC, 29, -9.485220737619e-01, 4.268867448498e-05, 2.3686e+01, 6.3586e-01, - 1DIAGNOSTIC, 30, -9.486721092039e-01, 3.858045653418e-05, 2.4322e+01, 6.3580e-01, - 1DIAGNOSTIC, 31, -9.488130047483e-01, 3.505297884983e-05, 2.4959e+01, 6.3691e-01, - 1DIAGNOSTIC, 32, -9.489462226900e-01, 3.201764521682e-05, 2.5608e+01, 6.4952e-01, - 1DIAGNOSTIC, 33, -9.490586481634e-01, 2.927317982201e-05, 2.6258e+01, 6.4971e-01, - 1DIAGNOSTIC, 34, -9.491701559972e-01, 2.681167543426e-05, 2.6893e+01, 6.3527e-01, - 1DIAGNOSTIC, 35, -9.492624274210e-01, 2.452823471845e-05, 2.7549e+01, 6.5595e-01, - 1DIAGNOSTIC, 36, -9.493628770869e-01, 2.243952667740e-05, 2.8204e+01, 6.5462e-01, - 1DIAGNOSTIC, 37, -9.494495200468e-01, 2.048361368922e-05, 2.8852e+01, 6.4816e-01, - 1DIAGNOSTIC, 38, -9.495405473498e-01, 1.866343792080e-05, 2.9495e+01, 6.4324e-01, - 1DIAGNOSTIC, 39, -9.496268359855e-01, 1.703400349676e-05, 3.0162e+01, 6.6685e-01, - 1DIAGNOSTIC, 40, -9.497000322982e-01, 1.559791177812e-05, 3.0794e+01, 6.3253e-01, - 1DIAGNOSTIC, 41, -9.497771790805e-01, 1.440145122137e-05, 3.1438e+01, 6.4330e-01, - 1DIAGNOSTIC, 42, -9.498533787989e-01, 1.344413495907e-05, 3.2098e+01, 6.6065e-01, - 1DIAGNOSTIC, 43, -9.499259765985e-01, 1.259555448721e-05, 3.2766e+01, 6.6806e-01, - 1DIAGNOSTIC, 44, -9.499944176054e-01, 1.186938525536e-05, 3.3428e+01, 6.6187e-01, - 1DIAGNOSTIC, 45, -9.500587081617e-01, 1.114275013202e-05, 3.4073e+01, 6.4474e-01, - 1DIAGNOSTIC, 46, -9.501097738204e-01, 1.042925922210e-05, 3.4727e+01, 6.5420e-01, - 1DIAGNOSTIC, 47, -9.501702553585e-01, 9.744193731578e-06, 3.5397e+01, 6.7015e-01, - 1DIAGNOSTIC, 48, -9.502264734415e-01, 9.128438297031e-06, 3.6067e+01, 6.6988e-01, - 1DIAGNOSTIC, 49, -9.502825012139e-01, 8.590171589103e-06, 3.6744e+01, 6.7717e-01, - 1DIAGNOSTIC, 50, -9.503355987662e-01, 8.062409708950e-06, 3.7413e+01, 6.6867e-01, - 1DIAGNOSTIC, 51, -9.503891330957e-01, 7.605212379393e-06, 3.8074e+01, 6.6092e-01, - 1DIAGNOSTIC, 52, -9.504366963630e-01, 7.202214985645e-06, 3.8746e+01, 6.7209e-01, - 1DIAGNOSTIC, 53, -9.504830849039e-01, 6.847932130242e-06, 3.9422e+01, 6.7607e-01, - 1DIAGNOSTIC, 54, -9.505208617174e-01, 6.490130292230e-06, 4.0394e+01, 9.7177e-01, - 1DIAGNOSTIC, 55, -9.505617927804e-01, 6.148998278225e-06, 4.1036e+01, 6.4252e-01, - 1DIAGNOSTIC, 56, -9.506035675399e-01, 5.775858442549e-06, 4.1677e+01, 6.4020e-01, - 1DIAGNOSTIC, 57, -9.506381844541e-01, 5.409821436594e-06, 4.2344e+01, 6.6715e-01, - 1DIAGNOSTIC, 58, -9.506748101217e-01, 5.065889717097e-06, 4.3015e+01, 6.7085e-01, - 1DIAGNOSTIC, 59, -9.507098879927e-01, 4.758147087711e-06, 4.3683e+01, 6.6789e-01, - 1DIAGNOSTIC, 60, -9.507474557860e-01, 4.502994962081e-06, 4.4338e+01, 6.5527e-01, - 1DIAGNOSTIC, 61, -9.507846723988e-01, 4.314946510729e-06, 4.4971e+01, 6.3297e-01, - 1DIAGNOSTIC, 62, -9.508203781605e-01, 4.165981238865e-06, 4.5618e+01, 6.4685e-01, - 1DIAGNOSTIC, 63, -9.508531605288e-01, 4.044108939619e-06, 4.6269e+01, 6.5171e-01, - 1DIAGNOSTIC, 64, -9.508865267920e-01, 3.915134336750e-06, 4.6942e+01, 6.7274e-01, - 1DIAGNOSTIC, 65, -9.509266527326e-01, 3.830609275505e-06, 4.7628e+01, 6.8591e-01, - 1DIAGNOSTIC, 66, -9.509584807685e-01, 3.756794738897e-06, 4.8619e+01, 9.9096e-01, - 1DIAGNOSTIC, 67, -9.509891926233e-01, 3.659118420308e-06, 4.9281e+01, 6.6197e-01, - 1DIAGNOSTIC, 68, -9.510282954437e-01, 3.589248502398e-06, 4.9913e+01, 6.3162e-01, - 1DIAGNOSTIC, 69, -9.510576520183e-01, 3.496142967508e-06, 5.0580e+01, 6.6788e-01, - 1DIAGNOSTIC, 70, -9.510884654505e-01, 3.402610360219e-06, 5.1260e+01, 6.7927e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.142190407230e-01, 1.797693134862e+308, 5.6859e+01, 5.5995e+00, - 1DIAGNOSTIC, 2, -9.177676375380e-01, 1.797693134862e+308, 6.2169e+01, 5.3100e+00, - 1DIAGNOSTIC, 3, -9.206482653704e-01, 1.797693134862e+308, 6.7499e+01, 5.3301e+00, - 1DIAGNOSTIC, 4, -9.233334033994e-01, 1.797693134862e+308, 7.2804e+01, 5.3051e+00, - 1DIAGNOSTIC, 5, -9.257613518698e-01, 1.797693134862e+308, 7.8145e+01, 5.3407e+00, - 1DIAGNOSTIC, 6, -9.279636401926e-01, 1.797693134862e+308, 8.3462e+01, 5.3169e+00, - 1DIAGNOSTIC, 7, -9.299660656544e-01, 1.797693134862e+308, 8.8797e+01, 5.3348e+00, - 1DIAGNOSTIC, 8, -9.315383956583e-01, 1.797693134862e+308, 9.4126e+01, 5.3289e+00, - 1DIAGNOSTIC, 9, -9.328756848869e-01, 1.797693134862e+308, 9.9475e+01, 5.3490e+00, - 1DIAGNOSTIC, 10, -9.340520047099e-01, 1.358145136726e-03, 1.0480e+02, 5.3217e+00, - 1DIAGNOSTIC, 11, -9.349934116236e-01, 1.080917976142e-03, 1.1015e+02, 5.3576e+00, - 1DIAGNOSTIC, 12, -9.359837844433e-01, 8.682712218186e-04, 1.1552e+02, 5.3684e+00, - 1DIAGNOSTIC, 13, -9.367621703911e-01, 6.955177601616e-04, 1.2093e+02, 5.4123e+00, - 1DIAGNOSTIC, 14, -9.374588501844e-01, 5.578008208325e-04, 1.2628e+02, 5.3405e+00, - 1DIAGNOSTIC, 15, -9.380896907529e-01, 4.495230710169e-04, 1.3164e+02, 5.3643e+00, - 1DIAGNOSTIC, 16, -9.386625114995e-01, 3.661692296015e-04, 1.3699e+02, 5.3510e+00, - 1DIAGNOSTIC, 17, -9.391865111635e-01, 3.040356040749e-04, 1.4235e+02, 5.3643e+00, - 1DIAGNOSTIC, 18, -9.396629229132e-01, 2.552627989109e-04, 1.4776e+02, 5.4072e+00, - 1DIAGNOSTIC, 19, -9.401025442456e-01, 2.163782791689e-04, 1.5313e+02, 5.3634e+00, - 1DIAGNOSTIC, 20, -9.405207671929e-01, 1.855396366808e-04, 1.5848e+02, 5.3563e+00, - 1DIAGNOSTIC, 21, -9.409064816381e-01, 1.594978930739e-04, 1.6387e+02, 5.3854e+00, - 1DIAGNOSTIC, 22, -9.412639847231e-01, 1.395543551407e-04, 1.6922e+02, 5.3530e+00, - 1DIAGNOSTIC, 23, -9.416028643603e-01, 1.230589961124e-04, 1.7458e+02, 5.3639e+00, - 1DIAGNOSTIC, 24, -9.419237119998e-01, 1.092966482058e-04, 1.7994e+02, 5.3551e+00, - 1DIAGNOSTIC, 25, -9.422225805136e-01, 9.768361008538e-05, 1.8534e+02, 5.4031e+00, - 1DIAGNOSTIC, 26, -9.425090712060e-01, 8.783623893623e-05, 1.9070e+02, 5.3626e+00, - 1DIAGNOSTIC, 27, -9.427756997103e-01, 7.936550322608e-05, 1.9609e+02, 5.3852e+00, - 1DIAGNOSTIC, 28, -9.430315150355e-01, 7.198700211753e-05, 2.0145e+02, 5.3599e+00, - 1DIAGNOSTIC, 29, -9.432745270528e-01, 6.549490320092e-05, 2.0681e+02, 5.3586e+00, - 1DIAGNOSTIC, 30, -9.434926442594e-01, 5.971517208165e-05, 2.1216e+02, 5.3514e+00, - 1DIAGNOSTIC, 31, -9.436925710900e-01, 5.443047451875e-05, 2.1755e+02, 5.3885e+00, - 1DIAGNOSTIC, 32, -9.438779572473e-01, 4.950879131489e-05, 2.2293e+02, 5.3841e+00, - 1DIAGNOSTIC, 33, -9.440528013816e-01, 4.495406127666e-05, 2.2830e+02, 5.3715e+00, - 1DIAGNOSTIC, 34, -9.442183635085e-01, 4.078165646516e-05, 2.3366e+02, 5.3562e+00, - 1DIAGNOSTIC, 35, -9.443725392517e-01, 3.694236404860e-05, 2.3907e+02, 5.4114e+00, - 1DIAGNOSTIC, 36, -9.445214954452e-01, 3.351945004047e-05, 2.4442e+02, 5.3520e+00, - 1DIAGNOSTIC, 37, -9.446604229364e-01, 3.046089329752e-05, 2.4978e+02, 5.3564e+00, - 1DIAGNOSTIC, 38, -9.447964895373e-01, 2.783352298660e-05, 2.5516e+02, 5.3809e+00, - 1DIAGNOSTIC, 39, -9.449259182371e-01, 2.562909076763e-05, 2.6053e+02, 5.3647e+00, - 1DIAGNOSTIC, 40, -9.450506128627e-01, 2.373588640707e-05, 2.6587e+02, 5.3454e+00, - 1DIAGNOSTIC, 41, -9.451695436945e-01, 2.207529728215e-05, 2.7122e+02, 5.3515e+00, - 1DIAGNOSTIC, 42, -9.452832035437e-01, 2.059199389874e-05, 2.7659e+02, 5.3692e+00, - 1DIAGNOSTIC, 43, -9.453964743041e-01, 1.928874089633e-05, 2.8196e+02, 5.3652e+00, - 1DIAGNOSTIC, 44, -9.455056536097e-01, 1.814022235947e-05, 2.8731e+02, 5.3503e+00, - 1DIAGNOSTIC, 45, -9.456177659397e-01, 1.714767119305e-05, 2.9268e+02, 5.3776e+00, - 1DIAGNOSTIC, 46, -9.457281125592e-01, 1.631190445487e-05, 2.9804e+02, 5.3533e+00, - 1DIAGNOSTIC, 47, -9.458382931393e-01, 1.560160054394e-05, 3.0343e+02, 5.3896e+00, - 1DIAGNOSTIC, 48, -9.459440149159e-01, 1.499796530305e-05, 3.0876e+02, 5.3320e+00, - 1DIAGNOSTIC, 49, -9.460482596911e-01, 1.447161697340e-05, 3.1414e+02, 5.3775e+00, - 1DIAGNOSTIC, 50, -9.461469778788e-01, 1.397702454258e-05, 3.1947e+02, 5.3377e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.176579042662e-01, 1.797693134862e+308, 3.6379e+02, 4.4310e+01, - 1DIAGNOSTIC, 2, -9.184240824007e-01, 1.797693134862e+308, 4.0736e+02, 4.3571e+01, - 1DIAGNOSTIC, 3, -9.194587242532e-01, 1.797693134862e+308, 4.5103e+02, 4.3677e+01, - 1DIAGNOSTIC, 4, -9.206604556136e-01, 1.797693134862e+308, 4.9472e+02, 4.3684e+01, - 1DIAGNOSTIC, 5, -9.218723169273e-01, 1.797693134862e+308, 5.3831e+02, 4.3596e+01, - 1DIAGNOSTIC, 6, -9.232255618453e-01, 1.797693134862e+308, 5.8176e+02, 4.3450e+01, - 1DIAGNOSTIC, 7, -9.246471291985e-01, 1.797693134862e+308, 6.2516e+02, 4.3398e+01, - 1DIAGNOSTIC, 8, -9.258925123770e-01, 1.797693134862e+308, 6.6858e+02, 4.3418e+01, - 1DIAGNOSTIC, 9, -9.270436873982e-01, 1.797693134862e+308, 7.1218e+02, 4.3606e+01, - 1DIAGNOSTIC, 10, -9.280381600081e-01, 7.582175011851e-04, 7.5574e+02, 4.3551e+01, - 1DIAGNOSTIC, 11, -9.289244023589e-01, 6.910079157288e-04, 7.9909e+02, 4.3355e+01, - 1DIAGNOSTIC, 12, -9.297294489369e-01, 6.130272943913e-04, 8.4269e+02, 4.3601e+01, - 1DIAGNOSTIC, 13, -9.304652358120e-01, 5.332941301047e-04, 8.8623e+02, 4.3542e+01, - 1DIAGNOSTIC, 14, -9.310779878106e-01, 4.562016104282e-04, 9.3005e+02, 4.3814e+01, - 1DIAGNOSTIC, 15, -9.316677440661e-01, 3.844735148763e-04, 9.7402e+02, 4.3975e+01, - 1DIAGNOSTIC, 16, -9.321264817190e-01, 3.209824465247e-04, 1.0177e+03, 4.3713e+01, - 1DIAGNOSTIC, 17, -9.325548648729e-01, 2.686606328942e-04, 1.0616e+03, 4.3821e+01, - 1DIAGNOSTIC, 18, -9.329656011094e-01, 2.254093852746e-04, 1.1054e+03, 4.3870e+01, - 1DIAGNOSTIC, 19, -9.333655321450e-01, 1.907465125234e-04, 1.1493e+03, 4.3825e+01, - 1DIAGNOSTIC, 20, -9.337532507589e-01, 1.629284908337e-04, 1.1932e+03, 4.3914e+01, - Elapsed time (stage 2): 1194 - - -Total elapsed time: 1247 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:04:52 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:04:52 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:04:55 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:04:59 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:02 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:03 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7442 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:03 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:06 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:06 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7618 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:06 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/anat/sub-PNC010_ses-02_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:09 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:09 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7752 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:10 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7758 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:10 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:05:58 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:00 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:00 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:01 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:02 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:04 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:04 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:05 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:06 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:08 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:09 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:09 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/surf/sub-PNC010_ses-02_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-02_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:09 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:18 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:29 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02/sub-PNC010_ses-02_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC010 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:30 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC010 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:30 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-02_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC010 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:30 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 10496 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:32 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:32 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc/sub-PNC010_ses-02_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/xfm/sub-PNC010_ses-02_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 10578 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:34 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:06:34 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC010_ses-02 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-02_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 72.367 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/logs/proc_func_19-03-2024-27513.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:07:36 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC010 02 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-02/QC/sub-PNC010_ses-02_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4497_micapipe_proc-func_sub-PNC010_ses-02 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC010* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 72.433 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC010_ses-02 -========================reprocessing without filter=================== -sub-PNC010_ses-03 -/mica/mica1/03_projects/yigu/software/micapipe/7tqc_functest.sh: line 9: micapipe_dev: command not found - - -micapipe -sub PNC010 -ses 03 -out /mica/mica1/03_projects/yigu/7t_funcQC/release -bids /data/mica3/BIDS_PNI/data_release/rawdata -tmpDir /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp -proc_func -mainScanStr task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold -nocleanup -mica - - -------------------------------------------------------------- - MICA pipeline - (Version v0.2.3 'Northern flicker') - Subject: PNC010 Session: ses-03 -------------------------------------------------------------- - Freesurfer licence: /data_/mica1/01_programs/freesurfer-7.3.2/license.txt - -[ INFO ]..... Inputs:  - Topup Config : DEFAULT - ICA fix training : DEFAULT - Main scan : task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold - Phase scan : DEFAULT - Reverse Phase : DEFAULT - Perform NSR : 0 - Perform GSR : 0 - No FIX : 0 - Longitudinal ses : FALSE - Drop TR : FALSE - Surface : fastsurfer - -[ INFO ]..... Using user provided main scan string(s): task-rest_echo-1_bold,task-rest_echo-2_bold,task-rest_echo-3_bold  -/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz - -[ INFO ]..... No run number specified for phase reversals and did not find more than one phase reversal scan - all good!  - -[ WARNING ]..... Subject PNC010 doesn't have a Main Phase Scan (pe): TOPUP will run only if a rpe is provided  - -[ WARNING ]..... Subject PNC010 doesn't have Reverse Phase Scan (rpe): TOPUP will be skipped  - -[ INFO ]..... Will use default config file for TOPUP: /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf  - -[ INFO ]..... ICA-FIX pipeline will be run!  - -[ INFO ]..... Will use default training file for ICA-FIX: /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData  - -[ INFO ]..... Global, white matter and CSF signal regression will not be performed (default)  - - -------------------------------------------------------------- - functional MRI processing - micapipe v0.2.3 'Northern flicker', LOCAL-MICA -------------------------------------------------------------- - -[ INFO ]..... MICA pipe - Software versions  - MRtrix3..... 3.0.1-26-g0f28beae - /data_/mica1/01_programs/mrtrix3-3.0.1/bin/mrinfo - FSL......... 6.0 - /data_/mica1/01_programs/fsl-6-0-3 - ANFI........  Dec 7 2020 (Version AFNI_20.3.03 'Vespasian') - /data/mica1/01_programs/afni-20.2.06/3dresample - ANTS........  2.3.4.dev187-gb37e8 - /data/mica1/01_programs/ants-2.3.4/bin - WorkBench... 1.4.2 - /data/mica1/01_programs/workbench-1.4.2/bin_linux64/wb_command - FreeSurfer.. freesurfer-linux-ubuntu18_x86_64-7.3.2-20220804-6354275 - /data/mica1/01_programs/freesurfer-7.3.2 - fix......... /data_/mica1/01_programs/fix/fix - /data_/mica1/01_programs/fix - python...... 3.9.13 - /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin/python - R........... 4.3.1 - /usr/bin/R - conda....... conda 4.10.3 - /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/conda - -[ INFO ]..... Variables for functional processing  - T1 nativepro : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w.nii.gz - T1 surface :  - mainScan : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz - mainScan json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.json - mainScan1 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz - mainScan1 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.json - mainScan2 : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz - mainScan2 json : /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.json - Main phase scan : file not found - Main reverse phase : file not found - TOPUP config file : /data_/mica1/01_programs/fsl-6-0-3/etc/flirtsch/b02b0_1.cnf - ICA-FIX training : /mica/mica1/03_projects/yigu/software/micapipe/functions/MICAMTL_training_15HC_15PX.RData - Saving temporal dir: TRUE - Parallel processing : 10 threads - proc_fun outputs: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold - tagMRI: me_task-rest_bold - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:07:54 EDT 2024: -COMMAND -->  mkdir -p /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03  - -[ INFO ]..... Processing mainScan scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:07:54 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-1_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:09:59 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:12:00 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reoMean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:12:14 EDT 2024: -COMMAND -->  3dvolreg -Fourier -twopass -base /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reoMean.nii.gz -zpad 4 -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz -1Dfile /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mainScan.1D -1Dmatrix_save /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mat_mc.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz  -++ 3dvolreg: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: RW Cox -++ Coarse del was 10, replaced with 7 -++ Max displacement in automask = 0.44 (mm) at sub-brick 12 -++ Max delta displ in automask = 0.42 (mm) at sub-brick 208 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:24:26 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mcMean.nii.gz  - -[ INFO ]..... Processing mainScan2 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:24:45 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-2_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:26:45 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_reo.nii.gz  - -[ INFO ]..... Processing mainScan3 scan  - func file: /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:28:45 EDT 2024: -COMMAND -->  3dresample -orient LPI -prefix /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_reo.nii.gz -inset /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz  -** AFNI converts NIFTI_datatype=512 (UINT16) in file /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz to FLOAT32 - Warnings of this type will be muted for this session. - Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none. -*+ WARNING: If you are performing spatial transformations on an oblique dset, - such as /data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz, - or viewing/combining it with volumes of differing obliquity, - you should consider running: - 3dWarp -deoblique - on this and other oblique datasets in the same session. - See 3dWarp -help for details. -++ Oblique dataset:/data/mica3/BIDS_PNI/data_release/rawdata/sub-PNC010/ses-03/func/sub-PNC010_ses-03_task-rest_echo-3_bold.nii.gz is 35.000004 degrees from plumb. - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:30:45 EDT 2024: -COMMAND -->  fslreorient2std /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_reo.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_reo.nii.gz  - -[ INFO ]..... Multiecho fMRI acquisition will be process with tedana  - -[ INFO ]..... Apply motion correction to echos  -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.820 -2.741 2.733 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 69.6 -++ ########################################################### -++ 3dAllineate: AFNI version=AFNI_20.3.03 (Dec 7 2020) [64-bit] -++ Authored by: Zhark the Registrator -++ Source dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_reo.nii.gz -++ Base dataset: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mcMean.nii.gz -++ You might want to use '-master' when using '-1D*_apply' -++ Loading datasets into memory - + -cmass x y z shifts = -0.943 -5.246 4.649 - + shift search range is +/- = 71.295 71.295 45.133 -++ master dataset for output = base -++ OpenMP thread count = 10 -++ ========== Applying transformation to 210 sub-bricks ========== -volume 0..1..2..3..4..5..6..7..8..9..10..11..12..13..14..15..16..17..18..19..20..21..22..23..24..25..26..27..28..29..30..31..32..33..34..35..36..37..38..39..40..41..42..43..44..45..46..47..48..49..50..51..52..53..54..55..56..57..58..59..60..61..62..63..64..65..66..67..68..69..70..71..72..73..74..75..76..77..78..79..80..81..82..83..84..85..86..87..88..89..90..91..92..93..94..95..96..97..98..99..100..101..102..103..104..105..106..107..108..109..110..111..112..113..114..115..116..117..118..119..120..121..122..123..124..125..126..127..128..129..130..131..132..133..134..135..136..137..138..139..140..141..142..143..144..145..146..147..148..149..150..151..152..153..154..155..156..157..158..159..160..161..162..163..164..165..166..167..168..169..170..171..172..173..174..175..176..177..178..179..180..181..182..183..184..185..186..187..188..189..190..191..192..193..194..195..196..197..198..199..200..201..202..203..204..205..206..207..208..209 -++ Output dataset /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_mc.nii.gz -++ 3dAllineate: total CPU time = 0.0 sec Elapsed = 71.8 -++ ########################################################### - Files : /mainScan_mc.nii.gz /mainScan2_mc.nii.gz /mainScan3_mc.nii.gz - EchoNumber : 1 2 3 - EchoTime : 0.0108 0.0273 0.0438 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:35:18 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:35:46 EDT 2024: -COMMAND -->  antsRegistrationSyNQuick.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - MI histogram bins: 32 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/nativepro_brain_rescaled.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x558af4684a50) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1706 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1489 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [111.102, 65.3677, -109.238] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558af44fb730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1486 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558af469b350 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x558af468b600) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1707 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1704 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [78.8093, 126.536, -121.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558af468de40) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1701 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558af4e97f50 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x558af4e96270) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2138 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1921 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [118, 118, 75] - Spacing: [1.89831, 1.89831, 1.9] - Origin: [111.102, 65.3677, -109.238] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.9 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526316 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558af468a640) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1918 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558af59c21c0 - Container manages memory: true - Size: 1044300 - Capacity: 1044300 - - Moving image = Image (0x558af4e95a00) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2139 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2136 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [84, 128, 136] - Spacing: [1.89831, 1.89831, 1.89831] - Origin: [78.8093, 126.536, -121.5] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1.89831 0 0 -0 -1.89831 0 -0 0 1.89831 - - PointToIndexMatrix: --0.526786 0 0 -0 -0.526786 0 -0 0 0.526786 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558af4691390) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2133 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x558af61bc300 - Container manages memory: true - Size: 1462272 - Capacity: 1462272 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x0 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.333586418182e-01, 1.797693134862e+308, 4.2823e-02, 4.2822e-02, - 2DIAGNOSTIC, 2, -7.357801091179e-01, 1.797693134862e+308, 4.4213e-02, 1.3900e-03, - 2DIAGNOSTIC, 3, -7.389389933113e-01, 1.797693134862e+308, 4.5536e-02, 1.3230e-03, - 2DIAGNOSTIC, 4, -7.441255674915e-01, 1.797693134862e+308, 4.6777e-02, 1.2410e-03, - 2DIAGNOSTIC, 5, -7.514125021584e-01, 1.797693134862e+308, 4.8049e-02, 1.2720e-03, - 2DIAGNOSTIC, 6, -7.557981218207e-01, 1.797693134862e+308, 4.9320e-02, 1.2710e-03, - 2DIAGNOSTIC, 7, -7.873560989734e-01, 1.797693134862e+308, 5.0827e-02, 1.5070e-03, - 2DIAGNOSTIC, 8, -8.036067449418e-01, 1.797693134862e+308, 5.2093e-02, 1.2660e-03, - 2DIAGNOSTIC, 9, -8.233852470156e-01, 1.797693134862e+308, 5.3618e-02, 1.5249e-03, - 2DIAGNOSTIC, 10, -8.488978352984e-01, 9.512076629325e-03, 5.5314e-02, 1.6959e-03, - 2DIAGNOSTIC, 11, -8.532607656179e-01, 9.904337041314e-03, 5.7005e-02, 1.6909e-03, - 2DIAGNOSTIC, 12, -8.447775637689e-01, 9.169875508955e-03, 5.8891e-02, 1.8859e-03, - 2DIAGNOSTIC, 13, -8.506160825919e-01, 7.985007414477e-03, 6.0793e-02, 1.9021e-03, - 2DIAGNOSTIC, 14, -8.514526478051e-01, 6.405292412170e-03, 6.2306e-02, 1.5130e-03, - 2DIAGNOSTIC, 15, -8.516951939640e-01, 4.644881639998e-03, 6.3798e-02, 1.4920e-03, - 2DIAGNOSTIC, 16, -8.518316361567e-01, 2.785037752071e-03, 6.5717e-02, 1.9190e-03, - 2DIAGNOSTIC, 17, -8.520227135603e-01, 1.567614476731e-03, 6.7241e-02, 1.5240e-03, - 2DIAGNOSTIC, 18, -8.522463707404e-01, 6.659781650047e-04, 6.8927e-02, 1.6861e-03, - 2DIAGNOSTIC, 19, -8.533160916689e-01, 1.722408522095e-04, 7.1336e-02, 2.4090e-03, - 2DIAGNOSTIC, 20, -8.535990146262e-01, 1.632292777034e-04, 7.3093e-02, 1.7569e-03, - 2DIAGNOSTIC, 21, -8.537937244285e-01, 2.214098926346e-04, 7.4543e-02, 1.4501e-03, - 2DIAGNOSTIC, 22, -8.539289031896e-01, 1.190997406372e-04, 7.6049e-02, 1.5061e-03, - 2DIAGNOSTIC, 23, -8.540572851877e-01, 1.049464483496e-04, 7.7969e-02, 1.9200e-03, - 2DIAGNOSTIC, 24, -8.541221331134e-01, 9.507049101925e-05, 7.9410e-02, 1.4410e-03, - 2DIAGNOSTIC, 25, -8.541687291600e-01, 8.116417217346e-05, 8.1081e-02, 1.6711e-03, - 2DIAGNOSTIC, 26, -8.542364989277e-01, 6.374045828319e-05, 8.2744e-02, 1.6630e-03, - 2DIAGNOSTIC, 27, -8.543763233053e-01, 4.610730862960e-05, 8.4503e-02, 1.7591e-03, - 2DIAGNOSTIC, 28, -8.543974554139e-01, 2.820539551963e-05, 8.5998e-02, 1.4951e-03, - 2DIAGNOSTIC, 29, -8.544313826901e-01, 2.210609721084e-05, 8.7522e-02, 1.5240e-03, - 2DIAGNOSTIC, 30, -8.545047951314e-01, 1.851574820742e-05, 9.0130e-02, 2.6081e-03, - 2DIAGNOSTIC, 31, -8.545151722543e-01, 1.574209282534e-05, 9.1659e-02, 1.5290e-03, - 2DIAGNOSTIC, 32, -8.545200763035e-01, 1.322103089851e-05, 9.3278e-02, 1.6191e-03, - 2DIAGNOSTIC, 33, -8.545259889780e-01, 1.109764447714e-05, 9.4782e-02, 1.5042e-03, - 2DIAGNOSTIC, 34, -8.545369084273e-01, 8.917290848759e-06, 9.6281e-02, 1.4989e-03, - 2DIAGNOSTIC, 35, -8.545558638981e-01, 6.736929298777e-06, 9.7727e-02, 1.4460e-03, - 2DIAGNOSTIC, 36, -8.546310185352e-01, 5.450255181363e-06, 9.9647e-02, 1.9200e-03, - 2DIAGNOSTIC, 37, -8.546547673055e-01, 5.306288648494e-06, 1.0184e-01, 2.1942e-03, - 2DIAGNOSTIC, 38, -8.546576652858e-01, 4.969331218584e-06, 1.0368e-01, 1.8351e-03, - 2DIAGNOSTIC, 39, -8.546617029717e-01, 4.584457172524e-06, 1.0551e-01, 1.8351e-03, - 2DIAGNOSTIC, 40, -8.546631552470e-01, 4.496573120315e-06, 1.0729e-01, 1.7769e-03, - 2DIAGNOSTIC, 41, -8.546656419907e-01, 4.158494163901e-06, 1.0910e-01, 1.8110e-03, - 2DIAGNOSTIC, 42, -8.546690720619e-01, 3.580248928395e-06, 1.1094e-01, 1.8439e-03, - 2DIAGNOSTIC, 43, -8.546737007759e-01, 2.852724419296e-06, 1.1238e-01, 1.4410e-03, - 2DIAGNOSTIC, 44, -8.546919604457e-01, 2.189314622283e-06, 1.1609e-01, 3.7031e-03, - 2DIAGNOSTIC, 45, -8.546919876455e-01, 1.543760152902e-06, 1.1822e-01, 2.1300e-03, - 2DIAGNOSTIC, 46, -8.546919888397e-01, 1.401333530000e-06, 1.2029e-01, 2.0730e-03, - 2DIAGNOSTIC, 47, -8.546919889053e-01, 1.371839149555e-06, 1.2259e-01, 2.2969e-03, - 2DIAGNOSTIC, 48, -8.546919889085e-01, 1.297455012143e-06, 1.2604e-01, 3.4480e-03, - 2DIAGNOSTIC, 49, -8.546919889088e-01, 1.192768406051e-06, 1.2961e-01, 3.5710e-03, - 2DIAGNOSTIC, 50, -8.546919889088e-01, 1.051274793804e-06, 1.3379e-01, 4.1800e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.012040602850e-01, 1.797693134862e+308, 1.8137e-01, 4.7579e-02, - 2DIAGNOSTIC, 2, -5.013987638942e-01, 1.797693134862e+308, 1.8422e-01, 2.8579e-03, - 2DIAGNOSTIC, 3, -5.033077474768e-01, 1.797693134862e+308, 1.8726e-01, 3.0410e-03, - 2DIAGNOSTIC, 4, -5.053594400636e-01, 1.797693134862e+308, 1.8968e-01, 2.4190e-03, - 2DIAGNOSTIC, 5, -5.076363973700e-01, 1.797693134862e+308, 1.9197e-01, 2.2850e-03, - 2DIAGNOSTIC, 6, -5.113437829793e-01, 1.797693134862e+308, 1.9445e-01, 2.4819e-03, - 2DIAGNOSTIC, 7, -5.144162520706e-01, 1.797693134862e+308, 1.9681e-01, 2.3620e-03, - 2DIAGNOSTIC, 8, -5.157670395477e-01, 1.797693134862e+308, 1.9893e-01, 2.1210e-03, - 2DIAGNOSTIC, 9, -5.206768601223e-01, 1.797693134862e+308, 2.0105e-01, 2.1169e-03, - 2DIAGNOSTIC, 10, -5.246868999157e-01, 3.004161658408e-03, 2.0373e-01, 2.6770e-03, - 2DIAGNOSTIC, 11, -5.323625485108e-01, 3.264237412412e-03, 2.0758e-01, 3.8490e-03, - 2DIAGNOSTIC, 12, -5.338777649788e-01, 3.258777333086e-03, 2.1011e-01, 2.5320e-03, - 2DIAGNOSTIC, 13, -5.350113466316e-01, 3.093321682740e-03, 2.1236e-01, 2.2550e-03, - 2DIAGNOSTIC, 14, -5.357694832045e-01, 2.783767581758e-03, 2.1472e-01, 2.3592e-03, - 2DIAGNOSTIC, 15, -5.365176443783e-01, 2.368511775228e-03, 2.1698e-01, 2.2531e-03, - 2DIAGNOSTIC, 16, -5.377081627559e-01, 1.952783526559e-03, 2.1947e-01, 2.4948e-03, - 2DIAGNOSTIC, 17, -5.413755817812e-01, 1.624439095736e-03, 2.2198e-01, 2.5129e-03, - 2DIAGNOSTIC, 18, -5.530334183736e-01, 1.573495220352e-03, 2.2445e-01, 2.4700e-03, - 2DIAGNOSTIC, 19, -5.632398227642e-01, 1.804098871369e-03, 2.2660e-01, 2.1479e-03, - 2DIAGNOSTIC, 20, -5.734835801571e-01, 2.217482326438e-03, 2.2962e-01, 3.0229e-03, - 2DIAGNOSTIC, 21, -5.811267129927e-01, 2.771353516163e-03, 2.3295e-01, 3.3231e-03, - 2DIAGNOSTIC, 22, -5.815351131554e-01, 3.058135772444e-03, 2.3515e-01, 2.2039e-03, - 2DIAGNOSTIC, 23, -5.818617408460e-01, 3.066748087492e-03, 2.3762e-01, 2.4700e-03, - 2DIAGNOSTIC, 24, -5.821194347303e-01, 2.808869646747e-03, 2.3979e-01, 2.1710e-03, - 2DIAGNOSTIC, 25, -5.830650355394e-01, 2.345407166193e-03, 2.4253e-01, 2.7399e-03, - 2DIAGNOSTIC, 26, -5.870122058333e-01, 1.804448925255e-03, 2.4508e-01, 2.5470e-03, - 2DIAGNOSTIC, 27, -5.885376017260e-01, 1.234869574728e-03, 2.4734e-01, 2.2602e-03, - 2DIAGNOSTIC, 28, -5.893291685298e-01, 8.251150787405e-04, 2.4989e-01, 2.5511e-03, - 2DIAGNOSTIC, 29, -5.896440730570e-01, 5.548315808983e-04, 2.5247e-01, 2.5792e-03, - 2DIAGNOSTIC, 30, -5.900556595247e-01, 4.326631215750e-04, 2.5503e-01, 2.5611e-03, - 2DIAGNOSTIC, 31, -5.929042470206e-01, 4.523919935640e-04, 2.5754e-01, 2.5072e-03, - 2DIAGNOSTIC, 32, -5.928055726682e-01, 4.314346006335e-04, 2.6094e-01, 3.4039e-03, - 2DIAGNOSTIC, 33, -5.931574993938e-01, 3.831575203172e-04, 2.6318e-01, 2.2359e-03, - 2DIAGNOSTIC, 34, -5.944972503418e-01, 3.269628968927e-04, 2.6573e-01, 2.5530e-03, - 2DIAGNOSTIC, 35, -5.944221689630e-01, 2.540843097931e-04, 2.6813e-01, 2.4030e-03, - 2DIAGNOSTIC, 36, -5.949275765887e-01, 2.241316656831e-04, 2.7080e-01, 2.6698e-03, - 2DIAGNOSTIC, 37, -5.950441246292e-01, 1.971869609710e-04, 2.7323e-01, 2.4300e-03, - 2DIAGNOSTIC, 38, -5.947601373095e-01, 1.603690719725e-04, 2.7565e-01, 2.4149e-03, - 2DIAGNOSTIC, 39, -5.950988142427e-01, 1.191276546447e-04, 2.7798e-01, 2.3279e-03, - 2DIAGNOSTIC, 40, -5.953957512436e-01, 7.663821082384e-05, 2.8050e-01, 2.5282e-03, - 2DIAGNOSTIC, 41, -5.959226577235e-01, 7.108848167938e-05, 2.8335e-01, 2.8481e-03, - 2DIAGNOSTIC, 42, -5.959289675674e-01, 5.795823502664e-05, 2.9235e-01, 9.0001e-03, - 2DIAGNOSTIC, 43, -5.959289655867e-01, 4.396827395171e-05, 2.9460e-01, 2.2430e-03, - 2DIAGNOSTIC, 44, -5.959289823974e-01, 4.207825232056e-05, 2.9694e-01, 2.3420e-03, - 2DIAGNOSTIC, 45, -5.959290108165e-01, 3.519856075028e-05, 2.9926e-01, 2.3220e-03, - 2DIAGNOSTIC, 46, -5.959290588505e-01, 3.076142020720e-05, 3.0158e-01, 2.3248e-03, - 2DIAGNOSTIC, 47, -5.959291400122e-01, 2.506295919932e-05, 3.0391e-01, 2.3251e-03, - 2DIAGNOSTIC, 48, -5.959292770748e-01, 1.433581499800e-05, 3.0617e-01, 2.2609e-03, - 2DIAGNOSTIC, 49, -5.959295083303e-01, 6.219940275349e-06, 3.0839e-01, 2.2190e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.208515671752e-01, 1.797693134862e+308, 3.7037e-01, 6.1984e-02, - 2DIAGNOSTIC, 2, -4.214306264716e-01, 1.797693134862e+308, 3.8142e-01, 1.1050e-02, - 2DIAGNOSTIC, 3, -4.222654678919e-01, 1.797693134862e+308, 3.9207e-01, 1.0642e-02, - 2DIAGNOSTIC, 4, -4.234670159425e-01, 1.797693134862e+308, 4.0268e-01, 1.0610e-02, - 2DIAGNOSTIC, 5, -4.265311016348e-01, 1.797693134862e+308, 4.1336e-01, 1.0687e-02, - 2DIAGNOSTIC, 6, -4.329298863740e-01, 1.797693134862e+308, 4.2385e-01, 1.0491e-02, - 2DIAGNOSTIC, 7, -4.369456944792e-01, 1.797693134862e+308, 4.3444e-01, 1.0589e-02, - 2DIAGNOSTIC, 8, -4.416181355362e-01, 1.797693134862e+308, 4.4500e-01, 1.0560e-02, - 2DIAGNOSTIC, 9, -4.464724626361e-01, 1.797693134862e+308, 4.5547e-01, 1.0472e-02, - 2DIAGNOSTIC, 10, -4.605399191472e-01, 5.414572018322e-03, 4.6920e-01, 1.3730e-02, - 2DIAGNOSTIC, 11, -4.773044001416e-01, 6.689193354880e-03, 4.8429e-01, 1.5084e-02, - 2DIAGNOSTIC, 12, -4.794452495230e-01, 7.265867326358e-03, 4.9800e-01, 1.3716e-02, - 2DIAGNOSTIC, 13, -4.795990062193e-01, 7.161770955656e-03, 5.0890e-01, 1.0894e-02, - 2DIAGNOSTIC, 14, -4.796767203375e-01, 6.494183199447e-03, 5.2123e-01, 1.2331e-02, - 2DIAGNOSTIC, 15, -4.796973043140e-01, 5.447837785989e-03, 5.3320e-01, 1.1971e-02, - 2DIAGNOSTIC, 16, -4.796848877473e-01, 4.282708785704e-03, 5.4332e-01, 1.0115e-02, - 2DIAGNOSTIC, 17, -4.796956689570e-01, 3.021311125643e-03, 5.5350e-01, 1.0189e-02, - 2DIAGNOSTIC, 18, -4.797616218114e-01, 1.805137059414e-03, 5.6502e-01, 1.1516e-02, - 2DIAGNOSTIC, 19, -4.798590827792e-01, 7.144423426984e-04, 5.7653e-01, 1.1515e-02, - 2DIAGNOSTIC, 20, -4.801056972716e-01, 1.039169261285e-04, 5.8962e-01, 1.3081e-02, - 2DIAGNOSTIC, 21, -4.803022550206e-01, 4.475951609809e-05, 6.0776e-01, 1.8148e-02, - 2DIAGNOSTIC, 22, -4.803759302553e-01, 4.947082271275e-05, 6.1872e-01, 1.0957e-02, - 2DIAGNOSTIC, 23, -4.804131845930e-01, 5.442794963854e-05, 6.3107e-01, 1.2353e-02, - 2DIAGNOSTIC, 24, -4.805490249667e-01, 5.947975534702e-05, 6.4453e-01, 1.3454e-02, - 2DIAGNOSTIC, 25, -4.805760631823e-01, 5.969186721953e-05, 6.5691e-01, 1.2378e-02, - 2DIAGNOSTIC, 26, -4.805815720708e-01, 5.421979842129e-05, 6.6731e-01, 1.0405e-02, - 2DIAGNOSTIC, 27, -4.805839002975e-01, 4.456841946220e-05, 6.7712e-01, 9.8100e-03, - 2DIAGNOSTIC, 28, -4.805875506961e-01, 3.312722063427e-05, 6.8696e-01, 9.8391e-03, - 2DIAGNOSTIC, 29, -4.805908796714e-01, 2.149225684397e-05, 6.9658e-01, 9.6231e-03, - 2DIAGNOSTIC, 30, -4.805875022389e-01, 1.359424996018e-05, 7.0792e-01, 1.1336e-02, - 2DIAGNOSTIC, 31, -4.805843250960e-01, 8.865141888276e-06, 7.2157e-01, 1.3654e-02, - 2DIAGNOSTIC, 32, -4.805908041350e-01, 5.251811562669e-06, 7.4213e-01, 2.0555e-02, - 2DIAGNOSTIC, 33, -4.805966881547e-01, 2.190400107321e-06, 7.5278e-01, 1.0654e-02, - 2DIAGNOSTIC, 34, -4.805799295986e-01, 1.320107103651e-06, 7.6354e-01, 1.0761e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.024556395944e-01, 1.797693134862e+308, 9.7179e-01, 2.0824e-01, - Elapsed time (stage 0): 9.9946e-01 - - -Stage 1 - iterations = 1000x500x250x0 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.964712799383e-01, 1.797693134862e+308, 4.6925e-02, 4.6924e-02, - 2DIAGNOSTIC, 2, -8.984089582394e-01, 1.797693134862e+308, 4.8034e-02, 1.1089e-03, - 2DIAGNOSTIC, 3, -9.020166238957e-01, 1.797693134862e+308, 4.9317e-02, 1.2829e-03, - 2DIAGNOSTIC, 4, -9.049130241656e-01, 1.797693134862e+308, 5.0425e-02, 1.1079e-03, - 2DIAGNOSTIC, 5, -9.072929489355e-01, 1.797693134862e+308, 5.1539e-02, 1.1141e-03, - 2DIAGNOSTIC, 6, -9.110282159627e-01, 1.797693134862e+308, 5.2853e-02, 1.3139e-03, - 2DIAGNOSTIC, 7, -9.117538742682e-01, 1.797693134862e+308, 5.4080e-02, 1.2269e-03, - 2DIAGNOSTIC, 8, -9.158681296195e-01, 1.797693134862e+308, 5.5162e-02, 1.0819e-03, - 2DIAGNOSTIC, 9, -9.225876659245e-01, 1.797693134862e+308, 5.6244e-02, 1.0819e-03, - 2DIAGNOSTIC, 10, -9.296464168934e-01, 2.121747248504e-03, 5.7553e-02, 1.3089e-03, - 2DIAGNOSTIC, 11, -9.384780983630e-01, 2.288780317077e-03, 5.8891e-02, 1.3380e-03, - 2DIAGNOSTIC, 12, -9.525426785742e-01, 2.630362871223e-03, 6.1554e-02, 2.6631e-03, - 2DIAGNOSTIC, 13, -9.518904118056e-01, 2.744948846490e-03, 6.3100e-02, 1.5459e-03, - 2DIAGNOSTIC, 14, -9.532562909063e-01, 2.691467160916e-03, 6.4423e-02, 1.3230e-03, - 2DIAGNOSTIC, 15, -9.557447015774e-01, 2.499325031313e-03, 6.5776e-02, 1.3530e-03, - 2DIAGNOSTIC, 16, -9.602050085530e-01, 2.257128726734e-03, 6.7112e-02, 1.3368e-03, - 2DIAGNOSTIC, 17, -9.697674328599e-01, 2.016650062071e-03, 6.8413e-02, 1.3001e-03, - 2DIAGNOSTIC, 18, -9.816744917997e-01, 1.885604735592e-03, 6.9752e-02, 1.3399e-03, - 2DIAGNOSTIC, 19, -9.950216987883e-01, 1.914147542960e-03, 7.1267e-02, 1.5149e-03, - 2DIAGNOSTIC, 20, -1.002568347556e+00, 1.979421620084e-03, 7.2777e-02, 1.5099e-03, - 2DIAGNOSTIC, 21, -1.015251523182e+00, 2.157105397889e-03, 7.5090e-02, 2.3129e-03, - 2DIAGNOSTIC, 22, -1.016346485516e+00, 2.321238876314e-03, 7.6413e-02, 1.3230e-03, - 2DIAGNOSTIC, 23, -1.018864871706e+00, 2.278074696016e-03, 7.7717e-02, 1.3041e-03, - 2DIAGNOSTIC, 24, -1.021971498925e+00, 2.081257905200e-03, 7.9232e-02, 1.5152e-03, - 2DIAGNOSTIC, 25, -1.023352302377e+00, 1.751570284962e-03, 8.0555e-02, 1.3230e-03, - 2DIAGNOSTIC, 26, -1.024040919630e+00, 1.342252020854e-03, 8.1874e-02, 1.3189e-03, - 2DIAGNOSTIC, 27, -1.026772195686e+00, 9.731501194720e-04, 8.3263e-02, 1.3890e-03, - 2DIAGNOSTIC, 28, -1.031036429154e+00, 7.092608343085e-04, 8.4772e-02, 1.5090e-03, - 2DIAGNOSTIC, 29, -1.032371790597e+00, 5.453537299116e-04, 8.6334e-02, 1.5621e-03, - 2DIAGNOSTIC, 30, -1.034652633195e+00, 4.352110642760e-04, 8.7666e-02, 1.3311e-03, - 2DIAGNOSTIC, 31, -1.034963677592e+00, 4.149971129881e-04, 8.9391e-02, 1.7250e-03, - 2DIAGNOSTIC, 32, -1.038013156679e+00, 3.945210972437e-04, 9.1347e-02, 1.9560e-03, - 2DIAGNOSTIC, 33, -1.038084783248e+00, 3.593218898758e-04, 9.2839e-02, 1.4930e-03, - 2DIAGNOSTIC, 34, -1.039217304650e+00, 3.287547578847e-04, 9.4414e-02, 1.5750e-03, - 2DIAGNOSTIC, 35, -1.039876627631e+00, 2.863781837396e-04, 9.5721e-02, 1.3061e-03, - 2DIAGNOSTIC, 36, -1.039490799237e+00, 2.215757252834e-04, 9.7023e-02, 1.3020e-03, - 2DIAGNOSTIC, 37, -1.040258266555e+00, 1.662709968603e-04, 9.8541e-02, 1.5190e-03, - 2DIAGNOSTIC, 38, -1.040865204699e+00, 1.351306855947e-04, 9.9961e-02, 1.4198e-03, - 2DIAGNOSTIC, 39, -1.040569556459e+00, 1.002533096479e-04, 1.0131e-01, 1.3521e-03, - 2DIAGNOSTIC, 40, -1.041521201025e+00, 8.138254553894e-05, 1.0284e-01, 1.5240e-03, - 2DIAGNOSTIC, 41, -1.042192830750e+00, 6.209582591153e-05, 1.0496e-01, 2.1219e-03, - 2DIAGNOSTIC, 42, -1.041335033215e+00, 5.292478773078e-05, 1.0652e-01, 1.5559e-03, - 2DIAGNOSTIC, 43, -1.041429879273e+00, 4.037697568961e-05, 1.0786e-01, 1.3421e-03, - 2DIAGNOSTIC, 44, -1.042664892729e+00, 4.000079988189e-05, 1.0924e-01, 1.3869e-03, - 2DIAGNOSTIC, 45, -1.043004277317e+00, 4.203060504171e-05, 1.1098e-01, 1.7378e-03, - 2DIAGNOSTIC, 46, -1.043150453060e+00, 3.837691454462e-05, 1.1269e-01, 1.7130e-03, - 2DIAGNOSTIC, 47, -1.043195381088e+00, 3.638979677947e-05, 1.1428e-01, 1.5869e-03, - 2DIAGNOSTIC, 48, -1.043287746507e+00, 3.544074379163e-05, 1.1581e-01, 1.5321e-03, - 2DIAGNOSTIC, 49, -1.043318411571e+00, 2.933989782266e-05, 1.1735e-01, 1.5361e-03, - 2DIAGNOSTIC, 50, -1.043319347369e+00, 2.596671189675e-05, 1.1898e-01, 1.6270e-03, - 2DIAGNOSTIC, 51, -1.043319656743e+00, 2.430693618711e-05, 1.2110e-01, 2.1219e-03, - 2DIAGNOSTIC, 52, -1.043319665356e+00, 1.584098757543e-05, 1.2345e-01, 2.3549e-03, - 2DIAGNOSTIC, 53, -1.043319665491e+00, 6.594875338949e-06, 1.2577e-01, 2.3131e-03, - 2DIAGNOSTIC, 54, -1.043319665494e+00, 3.591128811799e-06, 1.2790e-01, 2.1300e-03, - 2DIAGNOSTIC, 55, -1.043319665494e+00, 2.156284474808e-06, 1.3005e-01, 2.1551e-03, - 2DIAGNOSTIC, 56, -1.043319665494e+00, 1.368053300539e-06, 1.3193e-01, 1.8792e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.049760541304e-01, 1.797693134862e+308, 1.8127e-01, 4.9342e-02, - 2DIAGNOSTIC, 2, -7.060852743847e-01, 1.797693134862e+308, 1.8467e-01, 3.3970e-03, - 2DIAGNOSTIC, 3, -7.080403489723e-01, 1.797693134862e+308, 1.8824e-01, 3.5720e-03, - 2DIAGNOSTIC, 4, -7.102479986665e-01, 1.797693134862e+308, 1.9095e-01, 2.7030e-03, - 2DIAGNOSTIC, 5, -7.126462094785e-01, 1.797693134862e+308, 1.9342e-01, 2.4700e-03, - 2DIAGNOSTIC, 6, -7.165958122410e-01, 1.797693134862e+308, 1.9597e-01, 2.5570e-03, - 2DIAGNOSTIC, 7, -7.226787392692e-01, 1.797693134862e+308, 1.9874e-01, 2.7709e-03, - 2DIAGNOSTIC, 8, -7.265467164844e-01, 1.797693134862e+308, 2.0159e-01, 2.8481e-03, - 2DIAGNOSTIC, 9, -7.298252587945e-01, 1.797693134862e+308, 2.0570e-01, 4.1051e-03, - 2DIAGNOSTIC, 10, -7.300686539816e-01, 2.591679519012e-03, 2.0820e-01, 2.5020e-03, - 2DIAGNOSTIC, 11, -7.310316430202e-01, 2.357203200029e-03, 2.1077e-01, 2.5690e-03, - 2DIAGNOSTIC, 12, -7.325441059822e-01, 2.034579715708e-03, 2.1337e-01, 2.5980e-03, - 2DIAGNOSTIC, 13, -7.330537342793e-01, 1.650973617522e-03, 2.1598e-01, 2.6171e-03, - 2DIAGNOSTIC, 14, -7.345208679037e-01, 1.277521435178e-03, 2.1855e-01, 2.5659e-03, - 2DIAGNOSTIC, 15, -7.362809679367e-01, 9.471572340719e-04, 2.2183e-01, 3.2859e-03, - 2DIAGNOSTIC, 16, -7.374397289813e-01, 6.946931110527e-04, 2.2533e-01, 3.4940e-03, - 2DIAGNOSTIC, 17, -7.375740879982e-01, 5.503218606071e-04, 2.2849e-01, 3.1629e-03, - 2DIAGNOSTIC, 18, -7.373991053349e-01, 4.508816075584e-04, 2.3122e-01, 2.7251e-03, - 2DIAGNOSTIC, 19, -7.377122234384e-01, 3.949878707369e-04, 2.3392e-01, 2.7010e-03, - 2DIAGNOSTIC, 20, -7.383194256086e-01, 3.239203111338e-04, 2.3677e-01, 2.8510e-03, - 2DIAGNOSTIC, 21, -7.386506501918e-01, 2.527724625547e-04, 2.4091e-01, 4.1430e-03, - 2DIAGNOSTIC, 22, -7.387481064198e-01, 1.938586770224e-04, 2.4427e-01, 3.3541e-03, - 2DIAGNOSTIC, 23, -7.388648711983e-01, 1.329673216468e-04, 2.4822e-01, 3.9549e-03, - 2DIAGNOSTIC, 24, -7.387947313562e-01, 8.699732410675e-05, 2.5129e-01, 3.0658e-03, - 2DIAGNOSTIC, 25, -7.387604046807e-01, 6.298414380562e-05, 2.5400e-01, 2.7120e-03, - 2DIAGNOSTIC, 26, -7.387330717192e-01, 5.190110042790e-05, 2.5791e-01, 3.9160e-03, - 2DIAGNOSTIC, 27, -7.387542352642e-01, 3.933474659561e-05, 2.6155e-01, 3.6321e-03, - 2DIAGNOSTIC, 28, -7.386613855391e-01, 2.035846369555e-05, 2.6476e-01, 3.2089e-03, - 2DIAGNOSTIC, 29, -7.387215047353e-01, 5.789124279794e-06, 2.6776e-01, 3.0050e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.510924753277e-01, 1.797693134862e+308, 3.3756e-01, 6.9798e-02, - 2DIAGNOSTIC, 2, -5.513406927256e-01, 1.797693134862e+308, 3.5186e-01, 1.4300e-02, - 2DIAGNOSTIC, 3, -5.517839700420e-01, 1.797693134862e+308, 3.6654e-01, 1.4680e-02, - 2DIAGNOSTIC, 4, -5.524783056626e-01, 1.797693134862e+308, 3.8069e-01, 1.4155e-02, - 2DIAGNOSTIC, 5, -5.530511221164e-01, 1.797693134862e+308, 3.9452e-01, 1.3830e-02, - 2DIAGNOSTIC, 6, -5.537045027141e-01, 1.797693134862e+308, 4.0832e-01, 1.3798e-02, - 2DIAGNOSTIC, 7, -5.542480133936e-01, 1.797693134862e+308, 4.2372e-01, 1.5403e-02, - 2DIAGNOSTIC, 8, -5.543566290294e-01, 1.797693134862e+308, 4.3924e-01, 1.5516e-02, - 2DIAGNOSTIC, 9, -5.543661464377e-01, 1.797693134862e+308, 4.5356e-01, 1.4320e-02, - 2DIAGNOSTIC, 10, -5.543717078111e-01, 4.483332986985e-04, 4.6789e-01, 1.4331e-02, - 2DIAGNOSTIC, 11, -5.543774700128e-01, 3.448792047278e-04, 4.8539e-01, 1.7501e-02, - 2DIAGNOSTIC, 12, -5.543755816586e-01, 2.382891165066e-04, 4.9978e-01, 1.4390e-02, - 2DIAGNOSTIC, 13, -5.543733640711e-01, 1.440408039591e-04, 5.1485e-01, 1.5066e-02, - 2DIAGNOSTIC, 14, -5.543714633943e-01, 7.581398264767e-05, 5.2722e-01, 1.2369e-02, - 2DIAGNOSTIC, 15, -5.543710401175e-01, 2.921733024942e-05, 5.4115e-01, 1.3928e-02, - 2DIAGNOSTIC, 16, -5.543700964164e-01, 6.447054758704e-06, 5.5393e-01, 1.2783e-02, - 2DIAGNOSTIC, 17, -5.543712429408e-01, 2.309372351572e-06, 5.6862e-01, 1.4688e-02, - 2DIAGNOSTIC, 18, -5.543706452392e-01, 1.669139563239e-06, 5.8213e-01, 1.3513e-02, - 2DIAGNOSTIC, 19, -5.543741220206e-01, 1.455016152299e-06, 5.9422e-01, 1.2090e-02, - 2DIAGNOSTIC, 20, -5.543715495084e-01, 1.352043112239e-06, 6.0791e-01, 1.3694e-02, - 2DIAGNOSTIC, 21, -5.543771543063e-01, 1.561894272403e-06, 6.2169e-01, 1.3775e-02, - 2DIAGNOSTIC, 22, -5.543724021847e-01, 1.590833890057e-06, 6.3392e-01, 1.2233e-02, - 2DIAGNOSTIC, 23, -5.543742138698e-01, 1.598978378599e-06, 6.4762e-01, 1.3700e-02, - 2DIAGNOSTIC, 24, -5.543779673177e-01, 1.624985977534e-06, 6.6137e-01, 1.3753e-02, - 2DIAGNOSTIC, 25, -5.543739645320e-01, 1.527540632956e-06, 6.7476e-01, 1.3386e-02, - 2DIAGNOSTIC, 26, -5.543747564585e-01, 1.413458607324e-06, 6.8812e-01, 1.3355e-02, - 2DIAGNOSTIC, 27, -5.543784183243e-01, 1.382552399322e-06, 7.0318e-01, 1.5060e-02, - 2DIAGNOSTIC, 28, -5.543818317976e-01, 1.382116939633e-06, 7.1654e-01, 1.3362e-02, - 2DIAGNOSTIC, 29, -5.543715533216e-01, 1.237672845156e-06, 7.3040e-01, 1.3863e-02, - 2DIAGNOSTIC, 30, -5.543698240859e-01, 1.020459238978e-06, 7.4247e-01, 1.2073e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.555541529452e-01, 1.797693134862e+308, 9.7414e-01, 2.3167e-01, - Elapsed time (stage 1): 9.9902e-01 - - -Total elapsed time: 1.9997e+00 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:35:50 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_mask.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/from-nativepro_to-mainScan01_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan01_mean_mask.nii.gz -u int  -Module `duecredit` not successfully imported due to "No module named 'duecredit'". Package functionality unaffected. -Failed to import duecredit due to No module named 'duecredit' -INFO tedana:tedana_workflow:466 Using output directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana -INFO tedana:tedana_workflow:479 Loading input data: ['/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan2_mc.nii.gz', '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan3_mc.nii.gz'] -INFO io:__init__:106 Generating figures directory: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/figures -INFO tedana:tedana_workflow:561 Using user-defined mask -INFO tedana:tedana_workflow:609 Computing T2* map -INFO combine:make_optcom:242 Optimally combining data with voxel-wise T2* estimates -INFO tedana:tedana_workflow:634 Writing optimally combined data set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcom_bold.nii.gz -INFO pca:tedpca:228 Computing PCA of optimally combined multi-echo data with selection criteria: mdl -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO pca:tedpca:315 Selected 34 components with mdl dimensionality detection -INFO ica:tedica:83 ICA with random seed 42 converged in 77 iterations -INFO tedana:tedana_workflow:671 Making second component selection guess from ICA results -INFO collect:generate_metrics:123 Calculating weight maps -INFO collect:generate_metrics:132 Calculating parameter estimate maps for optimally combined data -INFO collect:generate_metrics:145 Calculating z-statistic maps -INFO collect:generate_metrics:155 Calculating F-statistic maps -INFO collect:generate_metrics:165 Thresholding z-statistic maps -INFO collect:generate_metrics:172 Calculating T2* F-statistic maps -INFO collect:generate_metrics:179 Calculating S0 F-statistic maps -INFO collect:generate_metrics:187 Counting significant voxels in T2* F-statistic maps -INFO collect:generate_metrics:193 Counting significant voxels in S0 F-statistic maps -INFO collect:generate_metrics:200 Thresholding optimal combination beta maps to match T2* F-statistic maps -INFO collect:generate_metrics:206 Thresholding optimal combination beta maps to match S0 F-statistic maps -INFO collect:generate_metrics:213 Calculating kappa and rho -INFO collect:generate_metrics:222 Calculating variance explained -INFO collect:generate_metrics:228 Calculating normalized variance explained -INFO collect:generate_metrics:235 Calculating DSI between thresholded T2* F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:246 Calculating DSI between thresholded S0 F-statistic and optimal combination beta maps -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/utils.py:211: RuntimeWarning: invalid value encountered in divide - dsi = (2.0 * intersection.sum(axis=axis)) / arr_sum -INFO collect:generate_metrics:257 Calculating signal-noise t-statistics -INFO collect:generate_metrics:295 Counting significant noise voxels from z-statistic maps -INFO collect:generate_metrics:306 Calculating decision table score -INFO tedica:kundu_selection_v2:138 Performing ICA component selection with Kundu decision tree v2.5 -INFO io:denoise_ts:374 Variance explained by decomposition: 78.67% -INFO io:write_split_ts:432 Writing high-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcomAccepted_bold.nii.gz -INFO io:write_split_ts:439 Writing low-Kappa time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcomRejected_bold.nii.gz -INFO io:write_split_ts:446 Writing denoised time series: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcomDenoised_bold.nii.gz -INFO io:writeresults:498 Writing full ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-ICA_components.nii.gz -INFO io:writeresults:502 Writing denoised ICA coefficient feature set: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-ICAAccepted_components.nii.gz -INFO io:writeresults:508 Writing Z-normalized spatial component maps: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-ICAAccepted_stat-z_components.nii.gz -INFO tedana:tedana_workflow:889 Making figures folder with static component maps and timecourse plots. -INFO io:denoise_ts:374 Variance explained by decomposition: 78.67% -/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/tedana/io.py:640: UserWarning: Data array used to create a new image contains 64-bit ints. This is likely due to creating the array with numpy and passing `int` as the `dtype`. Many tools such as FSL and SPM cannot deal with int64 in Nifti images, so for compatibility the data has been converted to int32. - nii = new_img_like(ref_img, newdata, affine=affine, copy_header=copy_header) -INFO tedana:tedana_workflow:918 Generating dynamic report -INFO tedana:tedana_workflow:921 Workflow completed -[15075 11507 33135 3496 2066 19510 6273 824 7861 3880 5123 8483 - 12919 3919 1423 1609 218 5867 3997 1244 1306 234 1054 223 - 219 341 0 0 0 0 0 0 0 0] -[84093 31799 23232 29732 27105 11157 23773 5731 11366 11261 10710 11908 - 6936 8139 6212 6992 3148 3687 5352 1838 1331 851 1638 1092 - 1569 2300 688 2087 1493 776 841 411 0 545] -[ 0 276 16403 596 25932 1457 845 200 10284 4939 707 0 - 7858 0 1432 1315 15132 0 737 0 361 0 0 0 - 1102 670 0 6558 4929 10432 9835 10426 5588 362] -[ 0 2364 1086 14687 482 4584 9512 364 436 28579 17445 9661 - 10099 817 16151 2370 78976 3317 2328 996 4895 336 13990 1260 - 8088 2168 1357 1638 1028 390 2343 506 573 9975] - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:45:24 EDT 2024: -COMMAND -->  cp -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/tedana/desc-optcomDenoised_bold.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:45:29 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_reo.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_spikeRegressors_FD.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_metric_FD.1D --fd  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:13 EDT 2024: -COMMAND -->  mv /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mainScan.1D /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.1D  - -[ WARNING ]..... No pe or rpe (AP, PA) acquisition were found, TOPUP will be skip!!!!!!!  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:13 EDT 2024: -COMMAND -->  mv -v /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz  -renamed '/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/mainScan_mc.nii.gz' -> '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz' - -[ INFO ]..... !!!!! goin str8 to ICA-FIX yo !!!!!  - -[ INFO ]..... Generating a func binary mask  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:13 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:23 EDT 2024: -COMMAND -->  N4BiasFieldCorrection -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -r -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:49:26 EDT 2024: -COMMAND -->  mri_synthstrip -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain_mask.nii.gz  -Configuring model on the CPU -Running SynthStrip model version 1 -Input image read from: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -Masked image saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -Binary brain mask saved to: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain_mask.nii.gz -If you use SynthStrip in your analysis, please cite: ----------------------------------------------------- -SynthStrip: Skull-Stripping for Any Brain Image. -A Hoopes, JS Mora, AV Dalca, B Fischl, M Hoffmann. -NeuroImage 206 (2022), 119474. - -[ INFO ]..... Subject PNC010 has MELODIC outputs  - -[ INFO ]..... Creating a synthetic T1nativepro image for registration  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:50:33 EDT 2024: -COMMAND -->  flirt -applyisoxfm 1.8983050584793091,1.8983050584793091,1.8999999761581421 -in /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -ref /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -out /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-nativepro_desc-T1wbold.nii.gz  - -[ INFO ]..... Registering func MRI to nativepro  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:50:58 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-nativepro_desc-T1wbold.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:54:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:54:05 EDT 2024: -COMMAND -->  mri_synthseg --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz --o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthseg.nii.gz --robust --threads 10 --cpu  -SynthSeg-robust 2.0 -using CPU, hiding all CUDA_VISIBLE_DEVICES -using 10 threads -predicting 1/1 - -segmentation saved in: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthseg.nii.gz - -If you use the new robust version of SynthSeg in a publication, please cite: -Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining -B. Billot, M. Collin, S.E. Arnold, S. Das, J.E. Iglesias - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:55:23 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthseg.nii.gz -uthr 42 -thr 42 -bin -mul -39 -add /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthseg.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:55:24 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ -t a -n 10 -p d -i [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,0]  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz - Mask images: - Initial transforms: [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,0] - Number of threads: 10 - Spline distance: 26 - Transform type: a - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,0] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 12x8x4x2 --smoothing-sigmas 4x3x2x1vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Image center alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz -Dimension = 3 -Number of stages = 2 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x558b30e20d20) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1698 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1483 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [79.2585, 126.986, -121.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558b30c97730) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1480 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f990aded010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x558b30e24020) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1699 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1696 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [111.551, 65.8168, -109.688] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558b30e2a0c0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1693 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f990772e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x558b30e3a840) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2126 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1911 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [160, 243, 259] - Spacing: [1, 1, 1] - Origin: [79.2585, 126.986, -121.949] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558b30e26890) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1908 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f9902a5a010 - Container manages memory: true - Size: 10069920 - Capacity: 10069920 - - Moving image = Image (0x558b30e3e3e0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2127 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2124 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [111.551, 65.8168, -109.688] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x558b30e2d130) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2121 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f98ff39b010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 2 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.711532671357e-01, 1.797693134862e+308, 2.3786e-01, 2.3786e-01, - 2DIAGNOSTIC, 2, -5.737409791843e-01, 1.797693134862e+308, 2.3925e-01, 1.3850e-03, - 2DIAGNOSTIC, 3, -5.769863702869e-01, 1.797693134862e+308, 2.4058e-01, 1.3351e-03, - 2DIAGNOSTIC, 4, -5.785221848645e-01, 1.797693134862e+308, 2.4198e-01, 1.3969e-03, - 2DIAGNOSTIC, 5, -5.812499161245e-01, 1.797693134862e+308, 2.4357e-01, 1.5879e-03, - 2DIAGNOSTIC, 6, -5.832024489121e-01, 1.797693134862e+308, 2.4517e-01, 1.6000e-03, - 2DIAGNOSTIC, 7, -5.836773276445e-01, 1.797693134862e+308, 2.4689e-01, 1.7211e-03, - 2DIAGNOSTIC, 8, -5.853802821690e-01, 1.797693134862e+308, 2.4858e-01, 1.6949e-03, - 2DIAGNOSTIC, 9, -5.856115325718e-01, 1.797693134862e+308, 2.5031e-01, 1.7240e-03, - 2DIAGNOSTIC, 10, -5.851356943216e-01, 1.617738944593e-03, 2.5193e-01, 1.6210e-03, - 2DIAGNOSTIC, 11, -5.852010698876e-01, 1.139931631688e-03, 2.5378e-01, 1.8551e-03, - 2DIAGNOSTIC, 12, -5.861565350401e-01, 7.824083303284e-04, 2.5566e-01, 1.8790e-03, - 2DIAGNOSTIC, 13, -5.868023264496e-01, 5.544553513102e-04, 2.5730e-01, 1.6351e-03, - 2DIAGNOSTIC, 14, -5.879045778050e-01, 3.990289125126e-04, 2.5898e-01, 1.6811e-03, - 2DIAGNOSTIC, 15, -5.916323762616e-01, 4.373110559149e-04, 2.6086e-01, 1.8780e-03, - 2DIAGNOSTIC, 16, -6.035629817295e-01, 8.502127600243e-04, 2.6326e-01, 2.4030e-03, - 2DIAGNOSTIC, 17, -6.057420500019e-01, 1.200607512690e-03, 2.6685e-01, 3.5939e-03, - 2DIAGNOSTIC, 18, -6.058391204997e-01, 1.451735302707e-03, 2.6889e-01, 2.0411e-03, - 2DIAGNOSTIC, 19, -6.065810027021e-01, 1.571567978619e-03, 2.7096e-01, 2.0680e-03, - 2DIAGNOSTIC, 20, -6.072466956167e-01, 1.536062342582e-03, 2.7269e-01, 1.7228e-03, - 2DIAGNOSTIC, 21, -6.078700138184e-01, 1.371692760270e-03, 2.7433e-01, 1.6470e-03, - 2DIAGNOSTIC, 22, -6.081237775480e-01, 1.120875993040e-03, 2.7600e-01, 1.6720e-03, - 2DIAGNOSTIC, 23, -6.086645105074e-01, 8.169878034152e-04, 2.7785e-01, 1.8501e-03, - 2DIAGNOSTIC, 24, -6.086869308672e-01, 4.863858285970e-04, 2.7945e-01, 1.5919e-03, - 2DIAGNOSTIC, 25, -6.082869168138e-01, 1.951600379190e-04, 2.8086e-01, 1.4179e-03, - 2DIAGNOSTIC, 26, -6.083020278202e-01, 1.280655692878e-04, 2.8303e-01, 2.1610e-03, - 2DIAGNOSTIC, 27, -6.083151512136e-01, 9.306005319652e-05, 2.8494e-01, 1.9178e-03, - 2DIAGNOSTIC, 28, -6.078683907143e-01, 4.564542284582e-05, 2.8670e-01, 1.7571e-03, - 2DIAGNOSTIC, 29, -6.089022474897e-01, 2.671802863139e-05, 2.8868e-01, 1.9751e-03, - 2DIAGNOSTIC, 30, -6.089194975229e-01, 1.699081645289e-05, 2.9089e-01, 2.2109e-03, - 2DIAGNOSTIC, 31, -6.084465935846e-01, 8.800806080907e-06, 2.9286e-01, 1.9760e-03, - 2DIAGNOSTIC, 32, -6.084470852620e-01, 4.340490452448e-06, 2.9491e-01, 2.0518e-03, - 2DIAGNOSTIC, 33, -6.089255447999e-01, 1.445644625612e-05, 2.9711e-01, 2.1989e-03, - 2DIAGNOSTIC, 34, -6.089303348137e-01, 2.271321056063e-05, 2.9878e-01, 1.6649e-03, - 2DIAGNOSTIC, 35, -6.089328258847e-01, 2.295763981751e-05, 3.0066e-01, 1.8840e-03, - 2DIAGNOSTIC, 36, -6.089381616928e-01, 2.171850637583e-05, 3.0256e-01, 1.8950e-03, - 2DIAGNOSTIC, 37, -6.089425123067e-01, 1.911938264713e-05, 3.0446e-01, 1.9031e-03, - 2DIAGNOSTIC, 38, -6.084727575388e-01, 2.895067049306e-06, 3.0635e-01, 1.8930e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.646958249230e-01, 1.797693134862e+308, 5.3742e-01, 2.3107e-01, - 2DIAGNOSTIC, 2, -4.638307726255e-01, 1.797693134862e+308, 5.4012e-01, 2.6939e-03, - 2DIAGNOSTIC, 3, -4.642916976633e-01, 1.797693134862e+308, 5.4224e-01, 2.1231e-03, - 2DIAGNOSTIC, 4, -4.647245815017e-01, 1.797693134862e+308, 5.4450e-01, 2.2552e-03, - 2DIAGNOSTIC, 5, -4.657254253801e-01, 1.797693134862e+308, 5.4657e-01, 2.0700e-03, - 2DIAGNOSTIC, 6, -4.699122732206e-01, 1.797693134862e+308, 5.4867e-01, 2.1091e-03, - 2DIAGNOSTIC, 7, -4.772526863622e-01, 1.797693134862e+308, 5.5076e-01, 2.0828e-03, - 2DIAGNOSTIC, 8, -4.882894305428e-01, 1.797693134862e+308, 5.5322e-01, 2.4612e-03, - 2DIAGNOSTIC, 9, -4.974700971786e-01, 1.797693134862e+308, 5.5620e-01, 2.9769e-03, - 2DIAGNOSTIC, 10, -5.046251773499e-01, 5.537521154322e-03, 5.5941e-01, 3.2198e-03, - 2DIAGNOSTIC, 11, -5.061622939884e-01, 6.062942547536e-03, 5.6191e-01, 2.4951e-03, - 2DIAGNOSTIC, 12, -5.076628392539e-01, 5.986112648665e-03, 5.6408e-01, 2.1749e-03, - 2DIAGNOSTIC, 13, -5.093193379533e-01, 5.474089893290e-03, 5.6655e-01, 2.4700e-03, - 2DIAGNOSTIC, 14, -5.100871668883e-01, 4.589886747289e-03, 5.7002e-01, 3.4659e-03, - 2DIAGNOSTIC, 15, -5.100492248505e-01, 3.449661601241e-03, 5.7223e-01, 2.2099e-03, - 2DIAGNOSTIC, 16, -5.116551569914e-01, 2.355150123378e-03, 5.7446e-01, 2.2321e-03, - 2DIAGNOSTIC, 17, -5.132419234969e-01, 1.478037516789e-03, 5.7699e-01, 2.5251e-03, - 2DIAGNOSTIC, 18, -5.135493321778e-01, 9.244272363307e-04, 5.7983e-01, 2.8441e-03, - 2DIAGNOSTIC, 19, -5.135203425719e-01, 6.199082093742e-04, 5.8241e-01, 2.5780e-03, - 2DIAGNOSTIC, 20, -5.135599468566e-01, 4.976042916805e-04, 5.8479e-01, 2.3758e-03, - 2DIAGNOSTIC, 21, -5.139078165977e-01, 3.917766060979e-04, 5.8743e-01, 2.6479e-03, - 2DIAGNOSTIC, 22, -5.144441031090e-01, 3.105094367653e-04, 5.9000e-01, 2.5659e-03, - 2DIAGNOSTIC, 23, -5.166473141690e-01, 3.033214377097e-04, 5.9312e-01, 3.1190e-03, - 2DIAGNOSTIC, 24, -5.168028959500e-01, 2.903702557808e-04, 5.9632e-01, 3.2060e-03, - 2DIAGNOSTIC, 25, -5.169262214287e-01, 2.535075686113e-04, 5.9887e-01, 2.5492e-03, - 2DIAGNOSTIC, 26, -5.172165912378e-01, 2.371111220086e-04, 6.0154e-01, 2.6619e-03, - 2DIAGNOSTIC, 27, -5.173871449632e-01, 2.361657781980e-04, 6.0410e-01, 2.5659e-03, - 2DIAGNOSTIC, 28, -5.174156225234e-01, 2.193238879462e-04, 6.0666e-01, 2.5589e-03, - 2DIAGNOSTIC, 29, -5.175594033060e-01, 1.854753892844e-04, 6.0922e-01, 2.5580e-03, - 2DIAGNOSTIC, 30, -5.181671311196e-01, 1.492994032929e-04, 6.1200e-01, 2.7828e-03, - 2DIAGNOSTIC, 31, -5.191914971323e-01, 1.264482929672e-04, 6.1618e-01, 4.1828e-03, - 2DIAGNOSTIC, 32, -5.197181401522e-01, 1.105264162295e-04, 6.1888e-01, 2.6970e-03, - 2DIAGNOSTIC, 33, -5.196969865546e-01, 1.227225387384e-04, 6.2192e-01, 3.0370e-03, - 2DIAGNOSTIC, 34, -5.197629702697e-01, 1.266698325366e-04, 6.2541e-01, 3.4931e-03, - 2DIAGNOSTIC, 35, -5.198643780316e-01, 1.218464596193e-04, 6.2772e-01, 2.3041e-03, - 2DIAGNOSTIC, 36, -5.199191125951e-01, 1.108035011312e-04, 6.2994e-01, 2.2230e-03, - 2DIAGNOSTIC, 37, -5.200022241028e-01, 9.376909392494e-05, 6.3275e-01, 2.8090e-03, - 2DIAGNOSTIC, 38, -5.201821414179e-01, 7.216947507507e-05, 6.3590e-01, 3.1509e-03, - 2DIAGNOSTIC, 39, -5.203828903173e-01, 4.986829454087e-05, 6.3941e-01, 3.5129e-03, - 2DIAGNOSTIC, 40, -5.205074942654e-01, 3.393739675082e-05, 6.4249e-01, 3.0770e-03, - 2DIAGNOSTIC, 41, -5.206998599018e-01, 3.211425951407e-05, 6.4558e-01, 3.0949e-03, - 2DIAGNOSTIC, 42, -5.208687128854e-01, 3.668257412123e-05, 6.4821e-01, 2.6240e-03, - 2DIAGNOSTIC, 43, -5.215483671020e-01, 4.613170434646e-05, 6.5083e-01, 2.6209e-03, - 2DIAGNOSTIC, 44, -5.218677368047e-01, 5.546011113839e-05, 6.5313e-01, 2.3069e-03, - 2DIAGNOSTIC, 45, -5.224803515688e-01, 6.802171206844e-05, 6.5545e-01, 2.3150e-03, - 2DIAGNOSTIC, 46, -5.298340296874e-01, 1.635981196621e-04, 6.5806e-01, 2.6081e-03, - 2DIAGNOSTIC, 47, -5.300195087956e-01, 2.401176258039e-04, 6.6187e-01, 3.8102e-03, - 2DIAGNOSTIC, 48, -5.307397839636e-01, 3.017858541945e-04, 6.6436e-01, 2.4920e-03, - 2DIAGNOSTIC, 49, -5.317231173705e-01, 3.465284263982e-04, 6.6655e-01, 2.1882e-03, - 2DIAGNOSTIC, 50, -5.330479404820e-01, 3.718816298647e-04, 6.6873e-01, 2.1849e-03, - 2DIAGNOSTIC, 51, -5.337319434633e-01, 3.687380898312e-04, 6.7123e-01, 2.4941e-03, - 2DIAGNOSTIC, 52, -5.344314979917e-01, 3.394351357923e-04, 6.7374e-01, 2.5129e-03, - 2DIAGNOSTIC, 53, -5.344339686326e-01, 2.871243116539e-04, 6.7594e-01, 2.2020e-03, - 2DIAGNOSTIC, 54, -5.344829194069e-01, 2.138556214292e-04, 6.7812e-01, 2.1780e-03, - 2DIAGNOSTIC, 55, -5.348060436070e-01, 1.301697967082e-04, 6.8028e-01, 2.1622e-03, - 2DIAGNOSTIC, 56, -5.351623057667e-01, 1.134177092946e-04, 6.8251e-01, 2.2249e-03, - 2DIAGNOSTIC, 57, -5.365348168648e-01, 1.015141051133e-04, 6.8535e-01, 2.8379e-03, - 2DIAGNOSTIC, 58, -5.373797096091e-01, 9.495909492124e-05, 6.9304e-01, 7.6959e-03, - 2DIAGNOSTIC, 59, -5.373796980480e-01, 8.857788048493e-05, 6.9523e-01, 2.1839e-03, - 2DIAGNOSTIC, 60, -5.373797978889e-01, 8.629716704945e-05, 6.9747e-01, 2.2418e-03, - 2DIAGNOSTIC, 61, -5.373799666715e-01, 8.188374648047e-05, 6.9962e-01, 2.1510e-03, - 2DIAGNOSTIC, 62, -5.373802519406e-01, 7.583136161415e-05, 7.0178e-01, 2.1620e-03, - 2DIAGNOSTIC, 63, -5.373807339271e-01, 6.266473118156e-05, 7.0395e-01, 2.1670e-03, - 2DIAGNOSTIC, 64, -5.373815478202e-01, 4.449887153996e-05, 7.0620e-01, 2.2490e-03, - 2DIAGNOSTIC, 65, -5.373829208482e-01, 2.560198600011e-05, 7.0846e-01, 2.2681e-03, - 2DIAGNOSTIC, 66, -5.373852332295e-01, 7.632313987958e-06, 7.1070e-01, 2.2330e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.149793570195e-01, 1.797693134862e+308, 9.6638e-01, 2.5569e-01, - 2DIAGNOSTIC, 2, -4.159929695307e-01, 1.797693134862e+308, 9.7872e-01, 1.2335e-02, - 2DIAGNOSTIC, 3, -4.171740876438e-01, 1.797693134862e+308, 9.9093e-01, 1.2208e-02, - 2DIAGNOSTIC, 4, -4.197223355721e-01, 1.797693134862e+308, 1.0029e+00, 1.1993e-02, - 2DIAGNOSTIC, 5, -4.210634467407e-01, 1.797693134862e+308, 1.0153e+00, 1.2420e-02, - 2DIAGNOSTIC, 6, -4.220994762808e-01, 1.797693134862e+308, 1.0277e+00, 1.2384e-02, - 2DIAGNOSTIC, 7, -4.235283790723e-01, 1.797693134862e+308, 1.0401e+00, 1.2348e-02, - 2DIAGNOSTIC, 8, -4.253975133939e-01, 1.797693134862e+308, 1.0542e+00, 1.4080e-02, - 2DIAGNOSTIC, 9, -4.285925263389e-01, 1.797693134862e+308, 1.0681e+00, 1.3940e-02, - 2DIAGNOSTIC, 10, -4.297618583917e-01, 2.261013995823e-03, 1.0803e+00, 1.2189e-02, - 2DIAGNOSTIC, 11, -4.321956654546e-01, 2.183849909708e-03, 1.0928e+00, 1.2556e-02, - 2DIAGNOSTIC, 12, -4.376999025388e-01, 2.285489488861e-03, 1.1074e+00, 1.4580e-02, - 2DIAGNOSTIC, 13, -4.586770766363e-01, 3.282387452652e-03, 1.1211e+00, 1.3695e-02, - 2DIAGNOSTIC, 14, -4.872964008443e-01, 5.253996774255e-03, 1.1372e+00, 1.6069e-02, - 2DIAGNOSTIC, 15, -5.148420165401e-01, 7.660413378279e-03, 1.1512e+00, 1.4006e-02, - 2DIAGNOSTIC, 16, -5.326855327208e-01, 9.751141467668e-03, 1.1667e+00, 1.5478e-02, - 2DIAGNOSTIC, 17, -5.458219911819e-01, 1.119093875938e-02, 1.1804e+00, 1.3730e-02, - 2DIAGNOSTIC, 18, -5.491801321260e-01, 1.158602910064e-02, 1.1932e+00, 1.2836e-02, - 2DIAGNOSTIC, 19, -5.533144990007e-01, 1.109569308191e-02, 1.2087e+00, 1.5451e-02, - 2DIAGNOSTIC, 20, -5.607530058843e-01, 9.893913453419e-03, 1.2203e+00, 1.1607e-02, - 2DIAGNOSTIC, 21, -5.649585036248e-01, 8.104497285848e-03, 1.2323e+00, 1.2031e-02, - 2DIAGNOSTIC, 22, -5.769198870382e-01, 6.226741168901e-03, 1.2481e+00, 1.5736e-02, - 2DIAGNOSTIC, 23, -5.792522333091e-01, 4.556916494091e-03, 1.2691e+00, 2.0998e-02, - 2DIAGNOSTIC, 24, -5.796134665754e-01, 3.333195782642e-03, 1.2810e+00, 1.1988e-02, - 2DIAGNOSTIC, 25, -5.818677280356e-01, 2.605374075242e-03, 1.2930e+00, 1.1992e-02, - 2DIAGNOSTIC, 26, -5.832537868894e-01, 2.119425514315e-03, 1.3055e+00, 1.2471e-02, - 2DIAGNOSTIC, 27, -5.843673839323e-01, 1.777943496059e-03, 1.3175e+00, 1.2015e-02, - 2DIAGNOSTIC, 28, -5.872299786761e-01, 1.424809298113e-03, 1.3300e+00, 1.2461e-02, - 2DIAGNOSTIC, 29, -5.933604136525e-01, 1.166408934437e-03, 1.3440e+00, 1.4003e-02, - 2DIAGNOSTIC, 30, -5.996995661623e-01, 1.075426579529e-03, 1.3725e+00, 2.8558e-02, - 2DIAGNOSTIC, 31, -5.996446419184e-01, 9.580241013899e-04, 1.3844e+00, 1.1885e-02, - 2DIAGNOSTIC, 32, -5.997017499747e-01, 9.704279797528e-04, 1.3982e+00, 1.3792e-02, - 2DIAGNOSTIC, 33, -5.997720087943e-01, 9.319468897106e-04, 1.4118e+00, 1.3618e-02, - 2DIAGNOSTIC, 34, -5.998231629308e-01, 8.120980866749e-04, 1.4237e+00, 1.1823e-02, - 2DIAGNOSTIC, 35, -5.999452331763e-01, 6.590380374069e-04, 1.4373e+00, 1.3613e-02, - 2DIAGNOSTIC, 36, -5.999645683684e-01, 4.760064121845e-04, 1.4491e+00, 1.1847e-02, - 2DIAGNOSTIC, 37, -6.000375795047e-01, 2.781903838077e-04, 1.4628e+00, 1.3663e-02, - 2DIAGNOSTIC, 38, -6.000829386894e-01, 1.060309275214e-04, 1.4745e+00, 1.1687e-02, - 2DIAGNOSTIC, 39, -6.001605850656e-01, 1.740845330652e-05, 1.4863e+00, 1.1788e-02, - 2DIAGNOSTIC, 40, -6.002278110972e-01, 1.847234964124e-05, 1.4990e+00, 1.2742e-02, - 2DIAGNOSTIC, 41, -6.003360004090e-01, 1.848672790461e-05, 1.5138e+00, 1.4826e-02, - 2DIAGNOSTIC, 42, -6.004400318344e-01, 1.885174649107e-05, 1.5265e+00, 1.2636e-02, - 2DIAGNOSTIC, 43, -6.005050374438e-01, 1.914082413553e-05, 1.5383e+00, 1.1874e-02, - 2DIAGNOSTIC, 44, -6.007002716116e-01, 2.061476110760e-05, 1.5505e+00, 1.2122e-02, - 2DIAGNOSTIC, 45, -6.011064843725e-01, 2.630425278597e-05, 1.5627e+00, 1.2261e-02, - 2DIAGNOSTIC, 46, -6.021084921640e-01, 4.089448736295e-05, 1.5804e+00, 1.7696e-02, - 2DIAGNOSTIC, 47, -6.022737743844e-01, 5.338369264522e-05, 1.5942e+00, 1.3760e-02, - 2DIAGNOSTIC, 48, -6.023383917502e-01, 6.160218785609e-05, 1.6081e+00, 1.3974e-02, - 2DIAGNOSTIC, 49, -6.023993478815e-01, 6.524746931795e-05, 1.6220e+00, 1.3825e-02, - 2DIAGNOSTIC, 50, -6.024091457296e-01, 6.325702541327e-05, 1.6376e+00, 1.5669e-02, - 2DIAGNOSTIC, 51, -6.023872415108e-01, 5.608201043881e-05, 1.6519e+00, 1.4305e-02, - 2DIAGNOSTIC, 52, -6.024137944236e-01, 4.523920234384e-05, 1.6671e+00, 1.5203e-02, - 2DIAGNOSTIC, 53, -6.024071595889e-01, 3.127881464365e-05, 1.6792e+00, 1.2080e-02, - 2DIAGNOSTIC, 54, -6.024251222964e-01, 1.702382900818e-05, 1.6933e+00, 1.4059e-02, - 2DIAGNOSTIC, 55, -6.024596299876e-01, 5.676973005648e-06, 1.7057e+00, 1.2445e-02, - 2DIAGNOSTIC, 56, -6.024876739140e-01, 3.778301185628e-06, 1.7179e+00, 1.2163e-02, - 2DIAGNOSTIC, 57, -6.026526982577e-01, 4.631451491221e-06, 1.7318e+00, 1.3920e-02, - 2DIAGNOSTIC, 58, -6.027503782328e-01, 6.457894616334e-06, 1.7439e+00, 1.2088e-02, - 2DIAGNOSTIC, 59, -6.029010062910e-01, 9.493627284682e-06, 1.7562e+00, 1.2319e-02, - 2DIAGNOSTIC, 60, -6.029310982553e-01, 1.190259762408e-05, 1.7704e+00, 1.4225e-02, - 2DIAGNOSTIC, 61, -6.030627592143e-01, 1.406790578269e-05, 1.7931e+00, 2.2636e-02, - 2DIAGNOSTIC, 62, -6.031413055160e-01, 1.570224221668e-05, 1.8072e+00, 1.4101e-02, - 2DIAGNOSTIC, 63, -6.031293935913e-01, 1.565219385419e-05, 1.8195e+00, 1.2327e-02, - 2DIAGNOSTIC, 64, -6.031335050872e-01, 1.434747178095e-05, 1.8331e+00, 1.3624e-02, - 2DIAGNOSTIC, 65, -6.031194736871e-01, 1.193650107669e-05, 1.8489e+00, 1.5791e-02, - 2DIAGNOSTIC, 66, -6.031392766643e-01, 8.850094843669e-06, 1.8608e+00, 1.1833e-02, - 2DIAGNOSTIC, 67, -6.030888361674e-01, 5.910610119890e-06, 1.8728e+00, 1.1996e-02, - 2DIAGNOSTIC, 68, -6.031082068751e-01, 3.417161901918e-06, 1.8862e+00, 1.3402e-02, - 2DIAGNOSTIC, 69, -6.030928682612e-01, 1.726479127349e-06, 1.9000e+00, 1.3819e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.024128176884e-01, 1.797693134862e+308, 2.3169e+00, 4.1688e-01, - 2DIAGNOSTIC, 2, -5.027222098116e-01, 1.797693134862e+308, 2.4012e+00, 8.4354e-02, - 2DIAGNOSTIC, 3, -5.029041396814e-01, 1.797693134862e+308, 2.4849e+00, 8.3677e-02, - 2DIAGNOSTIC, 4, -5.032236658680e-01, 1.797693134862e+308, 2.5826e+00, 9.7690e-02, - 2DIAGNOSTIC, 5, -5.034095253664e-01, 1.797693134862e+308, 2.7069e+00, 1.2430e-01, - 2DIAGNOSTIC, 6, -5.034629021475e-01, 1.797693134862e+308, 2.8440e+00, 1.3709e-01, - 2DIAGNOSTIC, 7, -5.034879728783e-01, 1.797693134862e+308, 2.9212e+00, 7.7201e-02, - 2DIAGNOSTIC, 8, -5.035476803653e-01, 1.797693134862e+308, 2.9992e+00, 7.8043e-02, - 2DIAGNOSTIC, 9, -5.036042857012e-01, 1.797693134862e+308, 3.0783e+00, 7.9081e-02, - 2DIAGNOSTIC, 10, -5.036874208119e-01, 1.516692420837e-04, 3.1542e+00, 7.5858e-02, - 2DIAGNOSTIC, 11, -5.037222891250e-01, 1.066043956048e-04, 3.2304e+00, 7.6287e-02, - 2DIAGNOSTIC, 12, -5.037945281367e-01, 7.779670462510e-05, 3.3110e+00, 8.0585e-02, - 2DIAGNOSTIC, 13, -5.038814807583e-01, 5.798503419019e-05, 3.3951e+00, 8.4086e-02, - 2DIAGNOSTIC, 14, -5.040213962904e-01, 5.421373297503e-05, 3.4910e+00, 9.5834e-02, - 2DIAGNOSTIC, 15, -5.041129016863e-01, 5.649987896220e-05, 3.6133e+00, 1.2236e-01, - 2DIAGNOSTIC, 16, -5.041635112436e-01, 5.719029117086e-05, 3.7231e+00, 1.0975e-01, - 2DIAGNOSTIC, 17, -5.041657460686e-01, 5.364393935217e-05, 3.8398e+00, 1.1670e-01, - 2DIAGNOSTIC, 18, -5.041677809221e-01, 4.763686295284e-05, 3.9402e+00, 1.0039e-01, - 2DIAGNOSTIC, 19, -5.041631499497e-01, 3.946662588384e-05, 4.0365e+00, 9.6346e-02, - 2DIAGNOSTIC, 20, -5.041623178439e-01, 3.090307862776e-05, 4.1348e+00, 9.8267e-02, - 2DIAGNOSTIC, 21, -5.041601621846e-01, 2.130598487327e-05, 4.2358e+00, 1.0101e-01, - 2DIAGNOSTIC, 22, -5.041610184071e-01, 1.262019302091e-05, 4.3381e+00, 1.0233e-01, - 2DIAGNOSTIC, 23, -5.041622627653e-01, 5.755374226132e-06, 4.4421e+00, 1.0403e-01, - 2DIAGNOSTIC, 24, -5.041604420962e-01, 2.253670797016e-06, 4.5443e+00, 1.0218e-01, - 2DIAGNOSTIC, 25, -5.041645216944e-01, 1.073740105231e-06, 4.6463e+00, 1.0197e-01, - 2DIAGNOSTIC, 26, -5.041689094144e-01, 1.192538952352e-06, 4.7289e+00, 8.2624e-02, - 2DIAGNOSTIC, 27, -5.041697494800e-01, 1.364668881614e-06, 4.8124e+00, 8.3524e-02, - 2DIAGNOSTIC, 28, -5.041765897178e-01, 1.689133060805e-06, 4.9095e+00, 9.7096e-02, - 2DIAGNOSTIC, 29, -5.042044640295e-01, 2.389392371085e-06, 4.9918e+00, 8.2306e-02, - 2DIAGNOSTIC, 30, -5.042630772458e-01, 3.994321888669e-06, 5.0753e+00, 8.3477e-02, - 2DIAGNOSTIC, 31, -5.042881986536e-01, 5.611085684878e-06, 5.1736e+00, 9.8295e-02, - 2DIAGNOSTIC, 32, -5.043039681909e-01, 6.992343447511e-06, 5.2523e+00, 7.8663e-02, - 2DIAGNOSTIC, 33, -5.043298861029e-01, 8.198142280688e-06, 5.3511e+00, 9.8790e-02, - 2DIAGNOSTIC, 34, -5.043559503038e-01, 9.033323785344e-06, 5.5021e+00, 1.5105e-01, - 2DIAGNOSTIC, 35, -5.043759321579e-01, 9.417065405380e-06, 5.5983e+00, 9.6157e-02, - 2DIAGNOSTIC, 36, -5.043790310278e-01, 9.087342630745e-06, 5.6944e+00, 9.6092e-02, - 2DIAGNOSTIC, 37, -5.043753753974e-01, 7.970395380655e-06, 5.8042e+00, 1.0987e-01, - 2DIAGNOSTIC, 38, -5.043758089469e-01, 6.345923768573e-06, 5.9059e+00, 1.0167e-01, - 2DIAGNOSTIC, 39, -5.043746989219e-01, 4.641768298484e-06, 6.0484e+00, 1.4253e-01, - 2DIAGNOSTIC, 40, -5.043730736083e-01, 3.453411764512e-06, 6.1483e+00, 9.9893e-02, - 2DIAGNOSTIC, 41, -5.043680322522e-01, 2.348589621056e-06, 6.2476e+00, 9.9321e-02, - 2DIAGNOSTIC, 42, -5.043664443040e-01, 1.337420910356e-06, 6.3347e+00, 8.7062e-02, - Elapsed time (stage 0): 6.4760e+00 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [12, 12, 12] - Shrink factors (level 2 out of 4): [8, 8, 8] - Shrink factors (level 3 out of 4): [4, 4, 4] - Shrink factors (level 4 out of 4): [2, 2, 2] - smoothing sigmas per level: [4, 3, 2, 1] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -8.039911036890e-01, 1.797693134862e+308, 2.0776e-01, 2.0776e-01, - 2DIAGNOSTIC, 2, -8.063011561410e-01, 1.797693134862e+308, 2.0893e-01, 1.1692e-03, - 2DIAGNOSTIC, 3, -8.106072392398e-01, 1.797693134862e+308, 2.1010e-01, 1.1699e-03, - 2DIAGNOSTIC, 4, -8.146238210157e-01, 1.797693134862e+308, 2.1126e-01, 1.1580e-03, - 2DIAGNOSTIC, 5, -8.204014202401e-01, 1.797693134862e+308, 2.1241e-01, 1.1520e-03, - 2DIAGNOSTIC, 6, -8.289069463608e-01, 1.797693134862e+308, 2.1360e-01, 1.1871e-03, - 2DIAGNOSTIC, 7, -8.457594422512e-01, 1.797693134862e+308, 2.1551e-01, 1.9090e-03, - 2DIAGNOSTIC, 8, -8.534300615372e-01, 1.797693134862e+308, 2.1668e-01, 1.1678e-03, - 2DIAGNOSTIC, 9, -8.623717805713e-01, 1.797693134862e+308, 2.1795e-01, 1.2751e-03, - 2DIAGNOSTIC, 10, -8.747614531442e-01, 5.664733935411e-03, 2.1966e-01, 1.7121e-03, - 2DIAGNOSTIC, 11, -8.852438833799e-01, 5.766998021373e-03, 2.2179e-01, 2.1250e-03, - 2DIAGNOSTIC, 12, -8.867458371099e-01, 5.434205660450e-03, 2.2409e-01, 2.2988e-03, - 2DIAGNOSTIC, 13, -8.869454159583e-01, 4.787271023608e-03, 2.2556e-01, 1.4780e-03, - 2DIAGNOSTIC, 14, -8.857745179188e-01, 3.876578421568e-03, 2.2733e-01, 1.7691e-03, - 2DIAGNOSTIC, 15, -8.853337709501e-01, 2.855760517725e-03, 2.2876e-01, 1.4231e-03, - 2DIAGNOSTIC, 16, -8.850718954961e-01, 1.868500025759e-03, 2.3011e-01, 1.3499e-03, - 2DIAGNOSTIC, 17, -8.865887030463e-01, 1.189691551409e-03, 2.3170e-01, 1.5969e-03, - 2DIAGNOSTIC, 18, -8.870666018349e-01, 6.298725250065e-04, 2.3309e-01, 1.3831e-03, - 2DIAGNOSTIC, 19, -8.864075781539e-01, 2.141639626300e-04, 2.3463e-01, 1.5409e-03, - 2DIAGNOSTIC, 20, -8.873928939755e-01, 3.927264290394e-05, 2.3621e-01, 1.5860e-03, - 2DIAGNOSTIC, 21, -8.895731254442e-01, 7.581694202468e-05, 2.3839e-01, 2.1789e-03, - 2DIAGNOSTIC, 22, -8.903542415289e-01, 1.345038051001e-04, 2.4038e-01, 1.9929e-03, - 2DIAGNOSTIC, 23, -8.902569403816e-01, 1.774329339879e-04, 2.4278e-01, 2.3999e-03, - 2DIAGNOSTIC, 24, -8.897093321049e-01, 1.778597393266e-04, 2.4496e-01, 2.1710e-03, - 2DIAGNOSTIC, 25, -8.879125543359e-01, 1.328191151861e-04, 2.4719e-01, 2.2311e-03, - 2DIAGNOSTIC, 26, -8.890275243158e-01, 8.912055708879e-05, 2.4913e-01, 1.9441e-03, - 2DIAGNOSTIC, 27, -8.900263167906e-01, 6.992982846951e-05, 2.5081e-01, 1.6820e-03, - 2DIAGNOSTIC, 28, -8.901090296548e-01, 5.249091904670e-05, 2.5503e-01, 4.2210e-03, - 2DIAGNOSTIC, 29, -8.901418723494e-01, 2.499677541572e-05, 2.5648e-01, 1.4460e-03, - 2DIAGNOSTIC, 30, -8.904139778671e-01, 1.071490632769e-05, 2.5792e-01, 1.4381e-03, - 2DIAGNOSTIC, 31, -8.907426515283e-01, 2.232931889879e-05, 2.5971e-01, 1.7910e-03, - 2DIAGNOSTIC, 32, -8.909436040262e-01, 4.059076242820e-05, 2.6132e-01, 1.6060e-03, - 2DIAGNOSTIC, 33, -8.904248511088e-01, 4.797627147316e-05, 2.6284e-01, 1.5271e-03, - 2DIAGNOSTIC, 34, -8.907060012166e-01, 4.888230190526e-05, 2.6438e-01, 1.5361e-03, - 2DIAGNOSTIC, 35, -8.911063928093e-01, 3.185558684189e-05, 2.6585e-01, 1.4739e-03, - 2DIAGNOSTIC, 36, -8.916759075749e-01, 2.762753405466e-05, 2.6733e-01, 1.4801e-03, - 2DIAGNOSTIC, 37, -8.927718506807e-01, 3.944785136468e-05, 2.6910e-01, 1.7681e-03, - 2DIAGNOSTIC, 38, -8.914532275407e-01, 3.635873731888e-05, 2.7095e-01, 1.8480e-03, - 2DIAGNOSTIC, 39, -8.930171644232e-01, 4.381510353287e-05, 2.7242e-01, 1.4739e-03, - 2DIAGNOSTIC, 40, -8.932602215246e-01, 5.042350300588e-05, 2.7408e-01, 1.6561e-03, - 2DIAGNOSTIC, 41, -8.934174688815e-01, 5.556291742752e-05, 2.7600e-01, 1.9190e-03, - 2DIAGNOSTIC, 42, -8.934983480825e-01, 5.765820336581e-05, 2.7740e-01, 1.4000e-03, - 2DIAGNOSTIC, 43, -8.935798445212e-01, 5.108791023149e-05, 2.7885e-01, 1.4529e-03, - 2DIAGNOSTIC, 44, -8.937475580134e-01, 4.326193870716e-05, 2.8075e-01, 1.9009e-03, - 2DIAGNOSTIC, 45, -8.937869594922e-01, 3.462069902125e-05, 2.8224e-01, 1.4861e-03, - 2DIAGNOSTIC, 46, -8.939099709311e-01, 2.783103174887e-05, 2.8415e-01, 1.9119e-03, - 2DIAGNOSTIC, 47, -8.932949880900e-01, 2.245383782437e-05, 2.8560e-01, 1.4460e-03, - 2DIAGNOSTIC, 48, -8.933414626153e-01, 6.493951001697e-06, 2.8706e-01, 1.4620e-03, - 2DIAGNOSTIC, 49, -8.934846813815e-01, 1.821432833164e-06, 2.8842e-01, 1.3661e-03, - 2DIAGNOSTIC, 50, -8.946966871670e-01, 6.526913838178e-06, 2.9065e-01, 2.2240e-03, - 2DIAGNOSTIC, 51, -8.950918350949e-01, 1.378830643815e-05, 2.9202e-01, 1.3740e-03, - 2DIAGNOSTIC, 52, -8.951074107080e-01, 2.020103041604e-05, 2.9352e-01, 1.5001e-03, - 2DIAGNOSTIC, 53, -8.951407297756e-01, 2.532768955079e-05, 2.9508e-01, 1.5581e-03, - 2DIAGNOSTIC, 54, -8.952035102148e-01, 2.920093459112e-05, 2.9639e-01, 1.3120e-03, - 2DIAGNOSTIC, 55, -8.944946646680e-01, 2.605690185489e-05, 2.9794e-01, 1.5490e-03, - 2DIAGNOSTIC, 56, -8.945177104500e-01, 2.160051756655e-05, 3.0026e-01, 2.3160e-03, - 2DIAGNOSTIC, 57, -8.945355814562e-01, 1.195976224739e-05, 3.0166e-01, 1.4060e-03, - 2DIAGNOSTIC, 58, -8.945475705149e-01, 1.910880413094e-06, 3.0295e-01, 1.2851e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -7.781350298739e-01, 1.797693134862e+308, 5.2116e-01, 2.1821e-01, - 2DIAGNOSTIC, 2, -7.786287033689e-01, 1.797693134862e+308, 5.2365e-01, 2.4941e-03, - 2DIAGNOSTIC, 3, -7.808313347143e-01, 1.797693134862e+308, 5.2610e-01, 2.4512e-03, - 2DIAGNOSTIC, 4, -7.829698986513e-01, 1.797693134862e+308, 5.2862e-01, 2.5170e-03, - 2DIAGNOSTIC, 5, -7.871610941804e-01, 1.797693134862e+308, 5.3083e-01, 2.2089e-03, - 2DIAGNOSTIC, 6, -7.909236720151e-01, 1.797693134862e+308, 5.3333e-01, 2.4981e-03, - 2DIAGNOSTIC, 7, -7.933330794099e-01, 1.797693134862e+308, 5.3768e-01, 4.3468e-03, - 2DIAGNOSTIC, 8, -7.932771818049e-01, 1.797693134862e+308, 5.4001e-01, 2.3391e-03, - 2DIAGNOSTIC, 9, -7.933707621022e-01, 1.797693134862e+308, 5.4207e-01, 2.0528e-03, - 2DIAGNOSTIC, 10, -7.938970872578e-01, 1.549726593094e-03, 5.4460e-01, 2.5282e-03, - 2DIAGNOSTIC, 11, -7.941815607967e-01, 1.233412141182e-03, 5.4711e-01, 2.5160e-03, - 2DIAGNOSTIC, 12, -7.942170796411e-01, 8.751219343104e-04, 5.4946e-01, 2.3489e-03, - 2DIAGNOSTIC, 13, -7.947431555184e-01, 5.706625948607e-04, 5.5209e-01, 2.6338e-03, - 2DIAGNOSTIC, 14, -7.945519896718e-01, 3.072499555802e-04, 5.5445e-01, 2.3599e-03, - 2DIAGNOSTIC, 15, -7.948205874161e-01, 1.564909171873e-04, 5.5714e-01, 2.6841e-03, - 2DIAGNOSTIC, 16, -7.951290494851e-01, 1.003568428175e-04, 5.5940e-01, 2.2600e-03, - 2DIAGNOSTIC, 17, -7.951406888645e-01, 9.300848261853e-05, 5.6167e-01, 2.2740e-03, - 2DIAGNOSTIC, 18, -7.957330510767e-01, 8.893123225870e-05, 5.6394e-01, 2.2631e-03, - 2DIAGNOSTIC, 19, -7.956745658229e-01, 7.744851019798e-05, 5.6651e-01, 2.5709e-03, - 2DIAGNOSTIC, 20, -7.958598114321e-01, 7.295059485802e-05, 5.6880e-01, 2.2891e-03, - 2DIAGNOSTIC, 21, -7.962564595928e-01, 7.387831450192e-05, 5.7107e-01, 2.2762e-03, - 2DIAGNOSTIC, 22, -7.967217247418e-01, 7.570255026450e-05, 5.7334e-01, 2.2709e-03, - 2DIAGNOSTIC, 23, -7.974258088676e-01, 8.959106292599e-05, 5.7710e-01, 3.7580e-03, - 2DIAGNOSTIC, 24, -7.984900084772e-01, 1.068881596909e-04, 5.8067e-01, 3.5689e-03, - 2DIAGNOSTIC, 25, -8.003579180187e-01, 1.432641835777e-04, 5.8507e-01, 4.3960e-03, - 2DIAGNOSTIC, 26, -8.000694833720e-01, 1.632983521122e-04, 5.8738e-01, 2.3141e-03, - 2DIAGNOSTIC, 27, -7.995958306775e-01, 1.607310047679e-04, 5.9062e-01, 3.2411e-03, - 2DIAGNOSTIC, 28, -7.996071144952e-01, 1.514543032001e-04, 5.9321e-01, 2.5940e-03, - 2DIAGNOSTIC, 29, -7.994242507002e-01, 1.252642266836e-04, 5.9555e-01, 2.3310e-03, - 2DIAGNOSTIC, 30, -7.992468196041e-01, 8.881933949877e-05, 5.9784e-01, 2.2972e-03, - 2DIAGNOSTIC, 31, -7.994517901972e-01, 5.356003480460e-05, 6.0018e-01, 2.3341e-03, - 2DIAGNOSTIC, 32, -7.996616222710e-01, 2.333096259751e-05, 6.0293e-01, 2.7511e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.768193640841e-01, 1.797693134862e+308, 8.4387e-01, 2.4094e-01, - 2DIAGNOSTIC, 2, -6.784036759602e-01, 1.797693134862e+308, 8.5827e-01, 1.4403e-02, - 2DIAGNOSTIC, 3, -6.801594805354e-01, 1.797693134862e+308, 8.7143e-01, 1.3156e-02, - 2DIAGNOSTIC, 4, -6.812621594890e-01, 1.797693134862e+308, 8.8596e-01, 1.4525e-02, - 2DIAGNOSTIC, 5, -6.827031490511e-01, 1.797693134862e+308, 8.9886e-01, 1.2906e-02, - 2DIAGNOSTIC, 6, -6.845830206258e-01, 1.797693134862e+308, 9.1267e-01, 1.3811e-02, - 2DIAGNOSTIC, 7, -6.873978312659e-01, 1.797693134862e+308, 9.2762e-01, 1.4950e-02, - 2DIAGNOSTIC, 8, -6.907712344027e-01, 1.797693134862e+308, 9.4478e-01, 1.7161e-02, - 2DIAGNOSTIC, 9, -6.911890226346e-01, 1.797693134862e+308, 9.6017e-01, 1.5382e-02, - 2DIAGNOSTIC, 10, -6.914829411803e-01, 1.517031630457e-03, 9.7581e-01, 1.5648e-02, - 2DIAGNOSTIC, 11, -6.918926462926e-01, 1.307016983420e-03, 9.8915e-01, 1.3340e-02, - 2DIAGNOSTIC, 12, -6.927145540226e-01, 1.095646119042e-03, 1.0065e+00, 1.7348e-02, - 2DIAGNOSTIC, 13, -6.929857399903e-01, 8.809147293486e-04, 1.0201e+00, 1.3580e-02, - 2DIAGNOSTIC, 14, -6.931189740281e-01, 6.543745285194e-04, 1.0378e+00, 1.7715e-02, - 2DIAGNOSTIC, 15, -6.933334201971e-01, 4.455324127872e-04, 1.0587e+00, 2.0913e-02, - 2DIAGNOSTIC, 16, -6.933767433835e-01, 2.709053100985e-04, 1.0750e+00, 1.6248e-02, - 2DIAGNOSTIC, 17, -6.933688177384e-01, 1.580241519193e-04, 1.0910e+00, 1.6073e-02, - 2DIAGNOSTIC, 18, -6.933592979485e-01, 1.203998505915e-04, 1.1072e+00, 1.6196e-02, - 2DIAGNOSTIC, 19, -6.933460124544e-01, 8.470981244486e-05, 1.1215e+00, 1.4317e-02, - 2DIAGNOSTIC, 20, -6.933371893931e-01, 5.074993231494e-05, 1.1360e+00, 1.4445e-02, - 2DIAGNOSTIC, 21, -6.933355403761e-01, 2.309597175808e-05, 1.1522e+00, 1.6197e-02, - 2DIAGNOSTIC, 22, -6.933469201268e-01, 1.152201656528e-05, 1.1684e+00, 1.6237e-02, - 2DIAGNOSTIC, 23, -6.933342156736e-01, 4.637937681726e-06, 1.1846e+00, 1.6176e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.786366989915e-01, 1.797693134862e+308, 1.6137e+00, 4.2905e-01, - 2DIAGNOSTIC, 2, -5.793222150946e-01, 1.797693134862e+308, 1.7075e+00, 9.3843e-02, - 2DIAGNOSTIC, 3, -5.798057743518e-01, 1.797693134862e+308, 1.8012e+00, 9.3718e-02, - 2DIAGNOSTIC, 4, -5.801702908166e-01, 1.797693134862e+308, 1.8889e+00, 8.7714e-02, - 2DIAGNOSTIC, 5, -5.803526714136e-01, 1.797693134862e+308, 1.9727e+00, 8.3789e-02, - 2DIAGNOSTIC, 6, -5.804745841811e-01, 1.797693134862e+308, 2.0698e+00, 9.7081e-02, - 2DIAGNOSTIC, 7, -5.806155152406e-01, 1.797693134862e+308, 2.2286e+00, 1.5878e-01, - 2DIAGNOSTIC, 8, -5.806265582027e-01, 1.797693134862e+308, 2.3303e+00, 1.0173e-01, - 2DIAGNOSTIC, 9, -5.806210426355e-01, 1.797693134862e+308, 2.4334e+00, 1.0313e-01, - 2DIAGNOSTIC, 10, -5.806268876038e-01, 1.956741214197e-04, 2.5340e+00, 1.0052e-01, - 2DIAGNOSTIC, 11, -5.806261448444e-01, 1.137324855070e-04, 2.6347e+00, 1.0074e-01, - 2DIAGNOSTIC, 12, -5.806333947569e-01, 6.341616459256e-05, 2.7447e+00, 1.1002e-01, - 2DIAGNOSTIC, 13, -5.806354924973e-01, 3.339163958910e-05, 2.8416e+00, 9.6901e-02, - 2DIAGNOSTIC, 14, -5.806354823981e-01, 1.755132706636e-05, 2.9262e+00, 8.4562e-02, - 2DIAGNOSTIC, 15, -5.806340268459e-01, 8.286469427896e-06, 3.0244e+00, 9.8217e-02, - 2DIAGNOSTIC, 16, -5.806369403306e-01, 3.314724828674e-06, 3.1228e+00, 9.8445e-02, - 2DIAGNOSTIC, 17, -5.806475220387e-01, 3.156057855905e-06, 3.2264e+00, 1.0357e-01, - 2DIAGNOSTIC, 18, -5.806437363798e-01, 3.090142617394e-06, 3.3345e+00, 1.0810e-01, - 2DIAGNOSTIC, 19, -5.806476361702e-01, 2.872749562961e-06, 3.4305e+00, 9.6023e-02, - 2DIAGNOSTIC, 20, -5.806545606515e-01, 2.882665811575e-06, 3.5363e+00, 1.0575e-01, - 2DIAGNOSTIC, 21, -5.806754704002e-01, 3.230394946478e-06, 3.6584e+00, 1.2207e-01, - 2DIAGNOSTIC, 22, -5.806786879989e-01, 3.603552227505e-06, 3.7677e+00, 1.0938e-01, - 2DIAGNOSTIC, 23, -5.806797406743e-01, 3.816155200620e-06, 3.8637e+00, 9.5993e-02, - 2DIAGNOSTIC, 24, -5.806893650962e-01, 3.989793662694e-06, 3.9696e+00, 1.0586e-01, - 2DIAGNOSTIC, 25, -5.806926086438e-01, 3.925837068146e-06, 4.0646e+00, 9.4984e-02, - 2DIAGNOSTIC, 26, -5.806955731676e-01, 3.716007915940e-06, 4.1607e+00, 9.6085e-02, - 2DIAGNOSTIC, 27, -5.806963743291e-01, 3.497824100231e-06, 4.2574e+00, 9.6732e-02, - 2DIAGNOSTIC, 28, -5.807336206017e-01, 3.667014463582e-06, 4.3555e+00, 9.8139e-02, - 2DIAGNOSTIC, 29, -5.807721903281e-01, 4.284307559291e-06, 4.4680e+00, 1.1245e-01, - 2DIAGNOSTIC, 30, -5.807928237600e-01, 4.987815663944e-06, 4.5797e+00, 1.1176e-01, - 2DIAGNOSTIC, 31, -5.807886652673e-01, 5.546551830951e-06, 4.6925e+00, 1.1275e-01, - 2DIAGNOSTIC, 32, -5.807921705835e-01, 5.759746557546e-06, 4.8337e+00, 1.4125e-01, - 2DIAGNOSTIC, 33, -5.807914226474e-01, 5.500998925170e-06, 4.9492e+00, 1.1547e-01, - 2DIAGNOSTIC, 34, -5.807885089805e-01, 4.910219638710e-06, 5.0605e+00, 1.1132e-01, - 2DIAGNOSTIC, 35, -5.807856080352e-01, 3.982987324676e-06, 5.1895e+00, 1.2899e-01, - 2DIAGNOSTIC, 36, -5.807880735130e-01, 2.903381314114e-06, 5.3194e+00, 1.2985e-01, - 2DIAGNOSTIC, 37, -5.807862468824e-01, 1.670313555066e-06, 5.4280e+00, 1.0862e-01, - Elapsed time (stage 1): 5.5635e+00 - - -Total elapsed time: 1.2043e+01 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:55:39 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_synthsegGM.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 10:55:40 EDT 2024: -COMMAND -->  antsRegistrationSyN.sh -d 3 -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz -f /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ -t s -n 10 -p d  - --------------------------------------------------------------------------------------- - Mapping parameters --------------------------------------------------------------------------------------- - ANTSPATH is /data/mica1/01_programs/ants-2.3.4/bin - - Dimensionality: 3 - Output name prefix: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_ - Fixed images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz - Moving images: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz - Mask images: - Initial transforms: - Number of threads: 10 - Spline distance: 26 - Transform type: s - CC radius: 4 - Precision: d - Use histogram matching 0 -====================================================================================== - antsRegistration call: --------------------------------------------------------------------------------------- -/data/mica1/01_programs/ants-2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x100,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric CC[ /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz,/mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz,1,4 ] --convergence [ 100x70x50x20,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --------------------------------------------------------------------------------------- -All_Command_lines_OK -Using double precision for computations. -============================================================================= -The composite transform comprises the following transforms (in order): - 1. Center of mass alignment using fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz and moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz (type = Euler3DTransform) -============================================================================= - number of levels = 4 - number of levels = 4 - number of levels = 4 - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz - fixed image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/func_brain_synthsegGM.nii.gz - moving image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/T1bold_in_func.nii.gz -Dimension = 3 -Number of stages = 3 -Use Histogram Matching false -Winsorize image intensities true -Lower quantile = 0.005 -Upper quantile = 0.995 -Stage 1 State - Image metric = Mattes - Fixed image = Image (0x55e8474744f0) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1727 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1512 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [111.551, 65.8168, -109.688] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e847479fa0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1509 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4436dec010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55e847475850) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 1728 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1725 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [111.551, 65.8168, -109.688] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e847472f30) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1722 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f443372d010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Rigid - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 2 State - Image metric = Mattes - Fixed image = Image (0x55e84748cb80) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2155 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 1940 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [111.551, 65.8168, -109.688] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e847479550) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 1937 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f443006e010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55e847491d70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2156 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2153 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [111.551, 65.8168, -109.688] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e84748fc00) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2150 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f442c9af010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = regular - Number of bins = 32 - Radius = 4 - Sampling percentage = 0.25 - Transform = Affine - Gradient step = 0.1 - Update field sigma (voxel space) = 0 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Stage 3 State - Image metric = CC - Fixed image = Image (0x55e847493f70) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2583 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2368 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [111.551, 65.8168, -109.688] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e8474923a0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2365 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f44292f0010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Moving image = Image (0x55e847494540) - RTTI typeinfo: itk::Image - Reference Count: 2 - Modified Time: 2584 - Debug: Off - Object Name: - Observers: - none - Source: (none) - Source output name: (none) - Release Data: Off - Data Released: False - Global Release Data: Off - PipelineMTime: 0 - UpdateMTime: 2581 - RealTimeStamp: 0 seconds - LargestPossibleRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - BufferedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - RequestedRegion: - Dimension: 3 - Index: [0, 0, 0] - Size: [224, 224, 143] - Spacing: [1, 1, 1] - Origin: [111.551, 65.8168, -109.688] - Direction: --1 0 0 -0 -1 0 -0 0 1 - - IndexToPointMatrix: --1 0 0 -0 -1 0 -0 0 1 - - PointToIndexMatrix: --1 0 0 -0 -1 0 -0 0 1 - - Inverse Direction: --1 0 0 -0 -1 0 -0 0 1 - - PixelContainer: - ImportImageContainer (0x55e8474944d0) - RTTI typeinfo: itk::ImportImageContainer - Reference Count: 1 - Modified Time: 2578 - Debug: Off - Object Name: - Observers: - none - Pointer: 0x7f4425c31010 - Container manages memory: true - Size: 7175168 - Capacity: 7175168 - - Weighting = 1 - Sampling strategy = none - Number of bins = 32 - Radius = 4 - Sampling percentage = 1 - Transform = SyN - Gradient step = 0.1 - Update field sigma (voxel space) = 3 - Total field sigma (voxel space) = 0 - Update field time sigma = 0 - Total field time sigma = 0 - Number of time indices = 0 - Number of time point samples = 0 -Registration using 3 total stages. - -Stage 0 - iterations = 1000x500x250x100 - convergence threshold = 1e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 0.25) - -*** Running Euler3DTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.057587371540e-01, 1.797693134862e+308, 2.1710e-01, 2.1710e-01, - 2DIAGNOSTIC, 2, -6.093154662534e-01, 1.797693134862e+308, 2.1897e-01, 1.8699e-03, - 2DIAGNOSTIC, 3, -6.154835356281e-01, 1.797693134862e+308, 2.2079e-01, 1.8291e-03, - 2DIAGNOSTIC, 4, -6.252603400622e-01, 1.797693134862e+308, 2.2260e-01, 1.8070e-03, - 2DIAGNOSTIC, 5, -6.377656597441e-01, 1.797693134862e+308, 2.2449e-01, 1.8840e-03, - 2DIAGNOSTIC, 6, -6.473977598499e-01, 1.797693134862e+308, 2.2700e-01, 2.5151e-03, - 2DIAGNOSTIC, 7, -6.476144094815e-01, 1.797693134862e+308, 2.2888e-01, 1.8771e-03, - 2DIAGNOSTIC, 8, -6.476715401758e-01, 1.797693134862e+308, 2.3071e-01, 1.8280e-03, - 2DIAGNOSTIC, 9, -6.475124908419e-01, 1.797693134862e+308, 2.3259e-01, 1.8799e-03, - 2DIAGNOSTIC, 10, -6.477306130235e-01, 4.939479023189e-03, 2.3474e-01, 2.1579e-03, - 2DIAGNOSTIC, 11, -6.480226093947e-01, 3.552213223196e-03, 2.3681e-01, 2.0690e-03, - 2DIAGNOSTIC, 12, -6.492294175689e-01, 2.263721452805e-03, 2.3963e-01, 2.8210e-03, - 2DIAGNOSTIC, 13, -6.494986225464e-01, 1.194456653266e-03, 2.4681e-01, 7.1731e-03, - 2DIAGNOSTIC, 14, -6.494986208528e-01, 4.767139162796e-04, 2.4905e-01, 2.2440e-03, - 2DIAGNOSTIC, 15, -6.494986272964e-01, 1.766301019103e-04, 2.5126e-01, 2.2089e-03, - 2DIAGNOSTIC, 16, -6.494986381900e-01, 1.659755773992e-04, 2.5345e-01, 2.1858e-03, - 2DIAGNOSTIC, 17, -6.494986566037e-01, 1.465887730703e-04, 2.5563e-01, 2.1861e-03, - 2DIAGNOSTIC, 18, -6.494986877202e-01, 1.175121241551e-04, 2.5772e-01, 2.0878e-03, - 2DIAGNOSTIC, 19, -6.494987402783e-01, 7.748289974926e-05, 2.5999e-01, 2.2740e-03, - 2DIAGNOSTIC, 20, -6.494988289837e-01, 3.954054853708e-05, 2.6218e-01, 2.1882e-03, - 2DIAGNOSTIC, 21, -6.494989784997e-01, 7.225375595853e-06, 2.6433e-01, 2.1479e-03, - 2DIAGNOSTIC, 22, -6.494992298216e-01, 1.485239032747e-06, 2.6651e-01, 2.1849e-03, - 2DIAGNOSTIC, 23, -6.494996505647e-01, 1.434755422136e-06, 2.6867e-01, 2.1510e-03, - 2DIAGNOSTIC, 24, -6.495003534998e-01, 1.397908436541e-06, 2.7081e-01, 2.1431e-03, - 2DIAGNOSTIC, 25, -6.495015192427e-01, 1.379069086233e-06, 2.7290e-01, 2.0890e-03, - 2DIAGNOSTIC, 26, -6.495034076846e-01, 1.384816028627e-06, 2.7499e-01, 2.0969e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.456754662661e-01, 1.797693134862e+308, 4.9659e-01, 2.2160e-01, - 2DIAGNOSTIC, 2, -5.467733930698e-01, 1.797693134862e+308, 5.1130e-01, 1.4709e-02, - 2DIAGNOSTIC, 3, -5.473961990948e-01, 1.797693134862e+308, 5.2723e-01, 1.5934e-02, - 2DIAGNOSTIC, 4, -5.477281917377e-01, 1.797693134862e+308, 5.4117e-01, 1.3937e-02, - 2DIAGNOSTIC, 5, -5.478167987062e-01, 1.797693134862e+308, 5.5550e-01, 1.4333e-02, - 2DIAGNOSTIC, 6, -5.479516621552e-01, 1.797693134862e+308, 5.7050e-01, 1.4998e-02, - 2DIAGNOSTIC, 7, -5.479962210165e-01, 1.797693134862e+308, 5.8467e-01, 1.4165e-02, - 2DIAGNOSTIC, 8, -5.480722895910e-01, 1.797693134862e+308, 6.0005e-01, 1.5388e-02, - 2DIAGNOSTIC, 9, -5.481217913806e-01, 1.797693134862e+308, 6.1453e-01, 1.4480e-02, - 2DIAGNOSTIC, 10, -5.481243631376e-01, 2.237213183110e-04, 6.2922e-01, 1.4689e-02, - 2DIAGNOSTIC, 11, -5.481780846314e-01, 1.181934498992e-04, 6.5274e-01, 2.3518e-02, - 2DIAGNOSTIC, 12, -5.481829211718e-01, 6.698837766392e-05, 6.6738e-01, 1.4641e-02, - 2DIAGNOSTIC, 13, -5.481713639780e-01, 4.196514920206e-05, 6.8028e-01, 1.2898e-02, - 2DIAGNOSTIC, 14, -5.481600715217e-01, 2.881458101711e-05, 6.9321e-01, 1.2929e-02, - 2DIAGNOSTIC, 15, -5.481483902390e-01, 1.757855956830e-05, 7.0674e-01, 1.3528e-02, - 2DIAGNOSTIC, 16, -5.481362490849e-01, 1.029469919098e-05, 7.2007e-01, 1.3337e-02, - 2DIAGNOSTIC, 17, -5.481371248135e-01, 4.436569918172e-06, 7.3303e-01, 1.2952e-02, - 2DIAGNOSTIC, 18, -5.481377299217e-01, 1.183838625407e-06, 7.4887e-01, 1.5846e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.585621384141e-01, 1.797693134862e+308, 1.1113e+00, 3.6246e-01, - 2DIAGNOSTIC, 2, -4.592352385327e-01, 1.797693134862e+308, 1.2083e+00, 9.6936e-02, - 2DIAGNOSTIC, 3, -4.595714271950e-01, 1.797693134862e+308, 1.3042e+00, 9.5908e-02, - 2DIAGNOSTIC, 4, -4.596211851219e-01, 1.797693134862e+308, 1.3982e+00, 9.4036e-02, - 2DIAGNOSTIC, 5, -4.596785485160e-01, 1.797693134862e+308, 1.4930e+00, 9.4798e-02, - 2DIAGNOSTIC, 6, -4.597794534959e-01, 1.797693134862e+308, 1.6376e+00, 1.4463e-01, - 2DIAGNOSTIC, 7, -4.597731110869e-01, 1.797693134862e+308, 1.7974e+00, 1.5981e-01, - 2DIAGNOSTIC, 8, -4.597724624351e-01, 1.797693134862e+308, 1.9023e+00, 1.0487e-01, - 2DIAGNOSTIC, 9, -4.597733567768e-01, 1.797693134862e+308, 2.0059e+00, 1.0363e-01, - 2DIAGNOSTIC, 10, -4.597723312386e-01, 1.212448401672e-04, 2.1109e+00, 1.0492e-01, - 2DIAGNOSTIC, 11, -4.597714449824e-01, 5.131808305968e-05, 2.2188e+00, 1.0790e-01, - 2DIAGNOSTIC, 12, -4.597731570858e-01, 2.305361702878e-05, 2.3271e+00, 1.0832e-01, - 2DIAGNOSTIC, 13, -4.597708695773e-01, 1.322120036587e-05, 2.4368e+00, 1.0969e-01, - 2DIAGNOSTIC, 14, -4.597711232123e-01, 6.003618928455e-06, 2.5422e+00, 1.0546e-01, - 2DIAGNOSTIC, 15, -4.597712124869e-01, 1.654031877893e-06, 2.6471e+00, 1.0482e-01, - 2DIAGNOSTIC, 16, -4.597709590742e-01, 1.787301500231e-06, 2.7526e+00, 1.0554e-01, - 2DIAGNOSTIC, 17, -4.597709720207e-01, 1.693510664154e-06, 2.8595e+00, 1.0689e-01, - 2DIAGNOSTIC, 18, -4.597699415599e-01, 1.568127535996e-06, 2.9668e+00, 1.0730e-01, - 2DIAGNOSTIC, 19, -4.597683411022e-01, 1.453938779684e-06, 3.0603e+00, 9.3481e-02, - 2DIAGNOSTIC, 20, -4.597640423062e-01, 1.208343307559e-06, 3.1531e+00, 9.2794e-02, - 2DIAGNOSTIC, 21, -4.597671053315e-01, 1.086398206923e-06, 3.2580e+00, 1.0495e-01, - 2DIAGNOSTIC, 22, -4.597659588395e-01, 1.028915450389e-06, 3.3626e+00, 1.0455e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.972597676171e-01, 1.797693134862e+308, 4.8813e+00, 1.5187e+00, - 2DIAGNOSTIC, 2, -3.972623879221e-01, 1.797693134862e+308, 5.5112e+00, 6.2990e-01, - 2DIAGNOSTIC, 3, -3.972624997335e-01, 1.797693134862e+308, 6.1908e+00, 6.7968e-01, - 2DIAGNOSTIC, 4, -3.972626551455e-01, 1.797693134862e+308, 7.1374e+00, 9.4655e-01, - 2DIAGNOSTIC, 5, -3.972626367728e-01, 1.797693134862e+308, 7.7560e+00, 6.1865e-01, - 2DIAGNOSTIC, 6, -3.972625712413e-01, 1.797693134862e+308, 8.3373e+00, 5.8129e-01, - 2DIAGNOSTIC, 7, -3.972624764200e-01, 1.797693134862e+308, 8.8876e+00, 5.5027e-01, - 2DIAGNOSTIC, 8, -3.972621227669e-01, 1.797693134862e+308, 9.4947e+00, 6.0709e-01, - 2DIAGNOSTIC, 9, -3.972621981325e-01, 1.797693134862e+308, 1.0120e+01, 6.2530e-01, - 2DIAGNOSTIC, 10, -3.972621174904e-01, 3.311566718428e-06, 1.0743e+01, 6.2350e-01, - 2DIAGNOSTIC, 11, -3.972620491432e-01, 2.810567793762e-06, 1.1281e+01, 5.3768e-01, - 2DIAGNOSTIC, 12, -3.972618869799e-01, 2.547128736180e-06, 1.1891e+01, 6.0933e-01, - 2DIAGNOSTIC, 13, -3.972615631304e-01, 2.322067069141e-06, 1.2460e+01, 5.6968e-01, - 2DIAGNOSTIC, 14, -3.972615559856e-01, 2.148316124828e-06, 1.3053e+01, 5.9246e-01, - 2DIAGNOSTIC, 15, -3.972614256613e-01, 2.001465428197e-06, 1.3761e+01, 7.0790e-01, - 2DIAGNOSTIC, 16, -3.972614591300e-01, 1.882472681514e-06, 1.4324e+01, 5.6337e-01, - 2DIAGNOSTIC, 17, -3.972612216993e-01, 1.773698766520e-06, 1.4933e+01, 6.0919e-01, - 2DIAGNOSTIC, 18, -3.972611242113e-01, 1.668359462172e-06, 1.5475e+01, 5.4207e-01, - 2DIAGNOSTIC, 19, -3.972613536660e-01, 1.594789594890e-06, 1.6086e+01, 6.1125e-01, - 2DIAGNOSTIC, 20, -3.972614063814e-01, 1.534428335483e-06, 1.6708e+01, 6.2117e-01, - 2DIAGNOSTIC, 21, -3.972613119017e-01, 1.479529757334e-06, 1.7312e+01, 6.0419e-01, - 2DIAGNOSTIC, 22, -3.972612039766e-01, 1.424726423685e-06, 1.7816e+01, 5.0442e-01, - 2DIAGNOSTIC, 23, -3.972609758431e-01, 1.359614512898e-06, 1.8285e+01, 4.6856e-01, - 2DIAGNOSTIC, 24, -3.972610859919e-01, 1.305202114527e-06, 1.8857e+01, 5.7193e-01, - 2DIAGNOSTIC, 25, -3.972610929432e-01, 1.253095891524e-06, 1.9378e+01, 5.2117e-01, - 2DIAGNOSTIC, 26, -3.972608342968e-01, 1.200853562248e-06, 1.9904e+01, 5.2615e-01, - 2DIAGNOSTIC, 27, -3.972608449041e-01, 1.149096227851e-06, 2.0375e+01, 4.7078e-01, - 2DIAGNOSTIC, 28, -3.972607379968e-01, 1.098375592125e-06, 2.0926e+01, 5.5166e-01, - 2DIAGNOSTIC, 29, -3.972608525301e-01, 1.063038960060e-06, 2.1568e+01, 6.4198e-01, - 2DIAGNOSTIC, 30, -3.972605156302e-01, 1.026333072543e-06, 2.2107e+01, 5.3905e-01, - Elapsed time (stage 0): 2.2476e+01 - - -Stage 1 - iterations = 1000x500x250x100 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - regular sampling (percentage = 2.5000e-01) - -*** Running AffineTransform registration *** - -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -6.312877901407e-01, 1.797693134862e+308, 1.8198e-01, 1.8198e-01, - 2DIAGNOSTIC, 2, -6.326724137403e-01, 1.797693134862e+308, 1.8406e-01, 2.0761e-03, - 2DIAGNOSTIC, 3, -6.344782717655e-01, 1.797693134862e+308, 1.8606e-01, 2.0030e-03, - 2DIAGNOSTIC, 4, -6.364084102130e-01, 1.797693134862e+308, 1.8804e-01, 1.9751e-03, - 2DIAGNOSTIC, 5, -6.381154925617e-01, 1.797693134862e+308, 1.9003e-01, 1.9910e-03, - 2DIAGNOSTIC, 6, -6.396480042894e-01, 1.797693134862e+308, 1.9193e-01, 1.9071e-03, - 2DIAGNOSTIC, 7, -6.410897357987e-01, 1.797693134862e+308, 1.9381e-01, 1.8721e-03, - 2DIAGNOSTIC, 8, -6.431099381647e-01, 1.797693134862e+308, 1.9569e-01, 1.8802e-03, - 2DIAGNOSTIC, 9, -6.447969142335e-01, 1.797693134862e+308, 1.9812e-01, 2.4390e-03, - 2DIAGNOSTIC, 10, -6.461251931837e-01, 1.512766409966e-03, 2.0028e-01, 2.1589e-03, - 2DIAGNOSTIC, 11, -6.472494193864e-01, 1.344617713383e-03, 2.0317e-01, 2.8880e-03, - 2DIAGNOSTIC, 12, -6.482937742027e-01, 1.173323049250e-03, 2.0549e-01, 2.3179e-03, - 2DIAGNOSTIC, 13, -6.483700700784e-01, 9.855689750629e-04, 2.0765e-01, 2.1570e-03, - 2DIAGNOSTIC, 14, -6.489268885059e-01, 8.137567118585e-04, 2.1034e-01, 2.6939e-03, - 2DIAGNOSTIC, 15, -6.490739486563e-01, 6.450655945196e-04, 2.1269e-01, 2.3499e-03, - 2DIAGNOSTIC, 16, -6.492455769189e-01, 4.854980886298e-04, 2.1477e-01, 2.0750e-03, - 2DIAGNOSTIC, 17, -6.493382591943e-01, 3.394750366410e-04, 2.1732e-01, 2.5599e-03, - 2DIAGNOSTIC, 18, -6.494397420039e-01, 2.302650825045e-04, 2.1939e-01, 2.0690e-03, - 2DIAGNOSTIC, 19, -6.494138344705e-01, 1.497165275072e-04, 2.2147e-01, 2.0771e-03, - 2DIAGNOSTIC, 20, -6.493403702568e-01, 9.079578194525e-05, 2.2389e-01, 2.4230e-03, - 2DIAGNOSTIC, 21, -6.489358677051e-01, 4.392512199075e-05, 2.3114e-01, 7.2410e-03, - 2DIAGNOSTIC, 22, -6.489358191168e-01, 1.862099299323e-05, 2.3347e-01, 2.3379e-03, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -5.431822926051e-01, 1.797693134862e+308, 4.5033e-01, 2.1685e-01, - 2DIAGNOSTIC, 2, -5.440143827557e-01, 1.797693134862e+308, 4.6576e-01, 1.5433e-02, - 2DIAGNOSTIC, 3, -5.451898352408e-01, 1.797693134862e+308, 4.7947e-01, 1.3710e-02, - 2DIAGNOSTIC, 4, -5.467414113524e-01, 1.797693134862e+308, 4.9353e-01, 1.4060e-02, - 2DIAGNOSTIC, 5, -5.484732221757e-01, 1.797693134862e+308, 5.0756e-01, 1.4033e-02, - 2DIAGNOSTIC, 6, -5.504115425473e-01, 1.797693134862e+308, 5.2183e-01, 1.4267e-02, - 2DIAGNOSTIC, 7, -5.521487502892e-01, 1.797693134862e+308, 5.4408e-01, 2.2256e-02, - 2DIAGNOSTIC, 8, -5.525302469988e-01, 1.797693134862e+308, 5.5840e-01, 1.4318e-02, - 2DIAGNOSTIC, 9, -5.527361807450e-01, 1.797693134862e+308, 5.7477e-01, 1.6371e-02, - 2DIAGNOSTIC, 10, -5.530263268892e-01, 1.321683875026e-03, 5.9179e-01, 1.7013e-02, - 2DIAGNOSTIC, 11, -5.534207265597e-01, 1.067997089088e-03, 6.0787e-01, 1.6087e-02, - 2DIAGNOSTIC, 12, -5.536666556129e-01, 8.066110763196e-04, 6.2430e-01, 1.6425e-02, - 2DIAGNOSTIC, 13, -5.537297751918e-01, 5.622652931015e-04, 6.3915e-01, 1.4848e-02, - 2DIAGNOSTIC, 14, -5.537872609135e-01, 3.617270541754e-04, 6.5531e-01, 1.6162e-02, - 2DIAGNOSTIC, 15, -5.538490035198e-01, 2.159059331034e-04, 6.7557e-01, 2.0267e-02, - 2DIAGNOSTIC, 16, -5.538522068301e-01, 1.298184129755e-04, 6.9397e-01, 1.8397e-02, - 2DIAGNOSTIC, 17, -5.538526481762e-01, 9.464434628716e-05, 7.0791e-01, 1.3936e-02, - 2DIAGNOSTIC, 18, -5.538537095221e-01, 6.587538601794e-05, 7.2048e-01, 1.2577e-02, - 2DIAGNOSTIC, 19, -5.538572741362e-01, 3.987055063443e-05, 7.3323e-01, 1.2750e-02, - 2DIAGNOSTIC, 20, -5.538629328709e-01, 2.033167822682e-05, 7.4747e-01, 1.4236e-02, - 2DIAGNOSTIC, 21, -5.538719416126e-01, 1.067695334793e-05, 7.6201e-01, 1.4540e-02, - 2DIAGNOSTIC, 22, -5.539153035050e-01, 7.818693460254e-06, 7.7631e-01, 1.4301e-02, - 2DIAGNOSTIC, 23, -5.539580152460e-01, 6.941901416174e-06, 8.0018e-01, 2.3869e-02, - 2DIAGNOSTIC, 24, -5.539912739671e-01, 7.514892294370e-06, 8.1921e-01, 1.9030e-02, - 2DIAGNOSTIC, 25, -5.539957735181e-01, 8.827096360867e-06, 8.3399e-01, 1.4783e-02, - 2DIAGNOSTIC, 26, -5.540248704108e-01, 9.981353591274e-06, 8.5128e-01, 1.7287e-02, - 2DIAGNOSTIC, 27, -5.540336449447e-01, 1.038099088733e-05, 8.6665e-01, 1.5374e-02, - 2DIAGNOSTIC, 28, -5.540432062729e-01, 1.006647563243e-05, 8.8129e-01, 1.4631e-02, - 2DIAGNOSTIC, 29, -5.540575487780e-01, 9.252564536932e-06, 9.0017e-01, 1.8887e-02, - 2DIAGNOSTIC, 30, -5.540644866934e-01, 7.947040556767e-06, 9.1471e-01, 1.4534e-02, - 2DIAGNOSTIC, 31, -5.540700130252e-01, 6.305914531775e-06, 9.3693e-01, 2.2220e-02, - 2DIAGNOSTIC, 32, -5.540701294238e-01, 4.952670529093e-06, 9.5177e-01, 1.4846e-02, - 2DIAGNOSTIC, 33, -5.540703901512e-01, 3.968811728948e-06, 9.6617e-01, 1.4394e-02, - 2DIAGNOSTIC, 34, -5.540713345059e-01, 3.277772862378e-06, 9.8142e-01, 1.5252e-02, - 2DIAGNOSTIC, 35, -5.540734500951e-01, 2.489733107659e-06, 9.9553e-01, 1.4115e-02, - 2DIAGNOSTIC, 36, -5.540792555983e-01, 2.093268837888e-06, 1.0096e+00, 1.4113e-02, - 2DIAGNOSTIC, 37, -5.540863194312e-01, 1.821682072710e-06, 1.0257e+00, 1.6062e-02, - 2DIAGNOSTIC, 38, -5.540875596362e-01, 1.614586588795e-06, 1.0527e+00, 2.6961e-02, - 2DIAGNOSTIC, 39, -5.540875864299e-01, 1.533596159706e-06, 1.0817e+00, 2.9078e-02, - 2DIAGNOSTIC, 40, -5.540875864442e-01, 1.476509621824e-06, 1.1281e+00, 4.6361e-02, - 2DIAGNOSTIC, 41, -5.540875864442e-01, 1.425497603708e-06, 1.1454e+00, 1.7266e-02, - 2DIAGNOSTIC, 42, -5.540875864442e-01, 1.315194818469e-06, 1.1631e+00, 1.7723e-02, - 2DIAGNOSTIC, 43, -5.540875864442e-01, 1.160582046893e-06, 1.1795e+00, 1.6408e-02, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -4.585622515743e-01, 1.797693134862e+308, 1.5605e+00, 3.8096e-01, - 2DIAGNOSTIC, 2, -4.595963779037e-01, 1.797693134862e+308, 1.6599e+00, 9.9477e-02, - 2DIAGNOSTIC, 3, -4.606354770737e-01, 1.797693134862e+308, 1.7600e+00, 1.0007e-01, - 2DIAGNOSTIC, 4, -4.612746723212e-01, 1.797693134862e+308, 1.8601e+00, 1.0008e-01, - 2DIAGNOSTIC, 5, -4.615861687453e-01, 1.797693134862e+308, 1.9598e+00, 9.9716e-02, - 2DIAGNOSTIC, 6, -4.620799992883e-01, 1.797693134862e+308, 2.0860e+00, 1.2618e-01, - 2DIAGNOSTIC, 7, -4.621850466277e-01, 1.797693134862e+308, 2.1762e+00, 9.0234e-02, - 2DIAGNOSTIC, 8, -4.622505601027e-01, 1.797693134862e+308, 2.2663e+00, 9.0082e-02, - 2DIAGNOSTIC, 9, -4.623697504919e-01, 1.797693134862e+308, 2.3589e+00, 9.2609e-02, - 2DIAGNOSTIC, 10, -4.627151998642e-01, 5.093676578982e-04, 2.5091e+00, 1.5022e-01, - 2DIAGNOSTIC, 11, -4.631564073371e-01, 3.653057663304e-04, 2.6202e+00, 1.1107e-01, - 2DIAGNOSTIC, 12, -4.631615153503e-01, 2.647608510442e-04, 2.7170e+00, 9.6832e-02, - 2DIAGNOSTIC, 13, -4.631398877763e-01, 2.043573029925e-04, 2.8812e+00, 1.6412e-01, - 2DIAGNOSTIC, 14, -4.631388753776e-01, 1.624580691537e-04, 2.9880e+00, 1.0684e-01, - 2DIAGNOSTIC, 15, -4.631364466255e-01, 1.233997264487e-04, 3.0846e+00, 9.6618e-02, - 2DIAGNOSTIC, 16, -4.631406781925e-01, 9.690689539331e-05, 3.2400e+00, 1.5540e-01, - 2DIAGNOSTIC, 17, -4.631357585571e-01, 6.854581704937e-05, 3.3433e+00, 1.0324e-01, - 2DIAGNOSTIC, 18, -4.631351538054e-01, 3.969075616693e-05, 3.4579e+00, 1.1469e-01, - 2DIAGNOSTIC, 19, -4.631345477616e-01, 1.406231261868e-05, 3.5619e+00, 1.0396e-01, -DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 2DIAGNOSTIC, 1, -3.989597480685e-01, 1.797693134862e+308, 4.8528e+00, 1.2909e+00, - 2DIAGNOSTIC, 2, -3.991460357559e-01, 1.797693134862e+308, 5.5130e+00, 6.6022e-01, - 2DIAGNOSTIC, 3, -3.991511125887e-01, 1.797693134862e+308, 6.6514e+00, 1.1384e+00, - 2DIAGNOSTIC, 4, -3.991484201144e-01, 1.797693134862e+308, 7.2554e+00, 6.0394e-01, - 2DIAGNOSTIC, 5, -3.991475326960e-01, 1.797693134862e+308, 8.0917e+00, 8.3634e-01, - 2DIAGNOSTIC, 6, -3.991472038264e-01, 1.797693134862e+308, 8.8225e+00, 7.3077e-01, - 2DIAGNOSTIC, 7, -3.991470824120e-01, 1.797693134862e+308, 9.6279e+00, 8.0547e-01, - 2DIAGNOSTIC, 8, -3.991469202146e-01, 1.797693134862e+308, 1.0322e+01, 6.9365e-01, - 2DIAGNOSTIC, 9, -3.991469059596e-01, 1.797693134862e+308, 1.0941e+01, 6.1962e-01, - 2DIAGNOSTIC, 10, -3.991470023224e-01, 1.631123189205e-05, 1.1594e+01, 6.5276e-01, - 2DIAGNOSTIC, 11, -3.991472223522e-01, 2.647686651841e-06, 1.2197e+01, 6.0279e-01, - 2DIAGNOSTIC, 12, -3.991476169421e-01, 2.349470635710e-06, 1.3188e+01, 9.9159e-01, - 2DIAGNOSTIC, 13, -3.991476383471e-01, 2.406749082529e-06, 1.3872e+01, 6.8331e-01, - 2DIAGNOSTIC, 14, -3.991475997494e-01, 2.322003237507e-06, 1.4474e+01, 6.0258e-01, - 2DIAGNOSTIC, 15, -3.991473405626e-01, 2.190090394885e-06, 1.5137e+01, 6.6271e-01, - 2DIAGNOSTIC, 16, -3.991472293674e-01, 2.048856890827e-06, 1.5753e+01, 6.1611e-01, - 2DIAGNOSTIC, 17, -3.991470958114e-01, 1.907886744153e-06, 1.6361e+01, 6.0757e-01, - 2DIAGNOSTIC, 18, -3.991470910052e-01, 1.772654653884e-06, 1.7014e+01, 6.5386e-01, - 2DIAGNOSTIC, 19, -3.991472173261e-01, 1.655529856232e-06, 1.7589e+01, 5.7439e-01, - 2DIAGNOSTIC, 20, -3.991471347188e-01, 1.552271626494e-06, 1.8259e+01, 6.6966e-01, - 2DIAGNOSTIC, 21, -3.991470926503e-01, 1.468292698821e-06, 1.8844e+01, 5.8557e-01, - 2DIAGNOSTIC, 22, -3.991473741804e-01, 1.418161588426e-06, 1.9601e+01, 7.5651e-01, - 2DIAGNOSTIC, 23, -3.991473974246e-01, 1.375948752234e-06, 2.0365e+01, 7.6478e-01, - 2DIAGNOSTIC, 24, -3.991473425771e-01, 1.335271956039e-06, 2.1051e+01, 6.8609e-01, - 2DIAGNOSTIC, 25, -3.991471793703e-01, 1.285152251805e-06, 2.1662e+01, 6.1075e-01, - 2DIAGNOSTIC, 26, -3.991472560294e-01, 1.237023307225e-06, 2.2423e+01, 7.6119e-01, - 2DIAGNOSTIC, 27, -3.991472305100e-01, 1.186740406757e-06, 2.2982e+01, 5.5824e-01, - 2DIAGNOSTIC, 28, -3.991469933771e-01, 1.132895857237e-06, 2.3633e+01, 6.5173e-01, - 2DIAGNOSTIC, 29, -3.991470876029e-01, 1.088865051568e-06, 2.4316e+01, 6.8300e-01, - 2DIAGNOSTIC, 30, -3.991468521944e-01, 1.041022518258e-06, 2.5047e+01, 7.3092e-01, - Elapsed time (stage 1): 2.5431e+01 - - -Stage 2 - iterations = 100x70x50x20 - convergence threshold = 1.0000e-06 - convergence window size = 10 - number of levels = 4 - using the CC metric (radius = 4, weight = 1.0000e+00) - preprocessing: winsorizing the image intensities - Shrink factors (level 1 out of 4): [8, 8, 8] - Shrink factors (level 2 out of 4): [4, 4, 4] - Shrink factors (level 3 out of 4): [2, 2, 2] - Shrink factors (level 4 out of 4): [1, 1, 1] - smoothing sigmas per level: [3, 2, 1, 0] - Using default NONE metricSamplingStrategy - -*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** - -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.034574767590e-01, 1.797693134862e+308, 2.5613e-01, 2.5613e-01, - 1DIAGNOSTIC, 2, -9.124696178343e-01, 1.797693134862e+308, 3.7615e-01, 1.2001e-01, - 1DIAGNOSTIC, 3, -9.204296790382e-01, 1.797693134862e+308, 4.7337e-01, 9.7223e-02, - 1DIAGNOSTIC, 4, -9.277939755176e-01, 1.797693134862e+308, 5.6740e-01, 9.4035e-02, - 1DIAGNOSTIC, 5, -9.328878671361e-01, 1.797693134862e+308, 6.6589e-01, 9.8492e-02, - 1DIAGNOSTIC, 6, -9.378836211370e-01, 1.797693134862e+308, 7.6928e-01, 1.0338e-01, - 1DIAGNOSTIC, 7, -9.415115607689e-01, 1.797693134862e+308, 8.9693e-01, 1.2765e-01, - 1DIAGNOSTIC, 8, -9.447088735454e-01, 1.797693134862e+308, 9.9401e-01, 9.7081e-02, - 1DIAGNOSTIC, 9, -9.475688521859e-01, 1.797693134862e+308, 1.0894e+00, 9.5370e-02, - 1DIAGNOSTIC, 10, -9.501130287309e-01, 3.101668295718e-03, 1.1853e+00, 9.5969e-02, - 1DIAGNOSTIC, 11, -9.522273086015e-01, 2.374064783220e-03, 1.2882e+00, 1.0284e-01, - 1DIAGNOSTIC, 12, -9.539125476269e-01, 1.824956513606e-03, 1.3914e+00, 1.0317e-01, - 1DIAGNOSTIC, 13, -9.552684486241e-01, 1.411839740607e-03, 1.4921e+00, 1.0075e-01, - 1DIAGNOSTIC, 14, -9.564013835128e-01, 1.112993148923e-03, 1.5979e+00, 1.0584e-01, - 1DIAGNOSTIC, 15, -9.570965278739e-01, 8.681733752208e-04, 1.6959e+00, 9.7907e-02, - 1DIAGNOSTIC, 16, -9.570743814127e-01, 6.680568297195e-04, 1.7964e+00, 1.0057e-01, - 1DIAGNOSTIC, 17, -9.568343314020e-01, 4.902457756637e-04, 1.8959e+00, 9.9430e-02, - 1DIAGNOSTIC, 18, -9.568641503265e-01, 3.409407801345e-04, 1.9958e+00, 9.9986e-02, - 1DIAGNOSTIC, 19, -9.567353901991e-01, 2.186847329350e-04, 2.0982e+00, 1.0234e-01, - 1DIAGNOSTIC, 20, -9.567730444711e-01, 1.270297201554e-04, 2.1964e+00, 9.8208e-02, - 1DIAGNOSTIC, 21, -9.566819475309e-01, 6.128804993154e-05, 2.2966e+00, 1.0023e-01, - 1DIAGNOSTIC, 22, -9.567405010491e-01, 1.973562619397e-05, 2.3965e+00, 9.9828e-02, - 1DIAGNOSTIC, 23, -9.566809586329e-01, -3.264792428397e-06, 2.4988e+00, 1.0235e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.184563924849e-01, 1.797693134862e+308, 3.3145e+00, 8.1568e-01, - 1DIAGNOSTIC, 2, -9.223950033101e-01, 1.797693134862e+308, 3.9771e+00, 6.6261e-01, - 1DIAGNOSTIC, 3, -9.261379627302e-01, 1.797693134862e+308, 4.6432e+00, 6.6615e-01, - 1DIAGNOSTIC, 4, -9.290462636224e-01, 1.797693134862e+308, 5.3240e+00, 6.8074e-01, - 1DIAGNOSTIC, 5, -9.314011702049e-01, 1.797693134862e+308, 5.9698e+00, 6.4585e-01, - 1DIAGNOSTIC, 6, -9.333398060929e-01, 1.797693134862e+308, 6.6591e+00, 6.8927e-01, - 1DIAGNOSTIC, 7, -9.348770080004e-01, 1.797693134862e+308, 7.3495e+00, 6.9043e-01, - 1DIAGNOSTIC, 8, -9.361105130455e-01, 1.797693134862e+308, 8.0392e+00, 6.8962e-01, - 1DIAGNOSTIC, 9, -9.371956137093e-01, 1.797693134862e+308, 8.7296e+00, 6.9041e-01, - 1DIAGNOSTIC, 10, -9.381587539545e-01, 1.306386768498e-03, 9.4419e+00, 7.1235e-01, - 1DIAGNOSTIC, 11, -9.390267776723e-01, 9.822641849338e-04, 1.0122e+01, 6.8007e-01, - 1DIAGNOSTIC, 12, -9.398194966820e-01, 7.432686453057e-04, 1.0825e+01, 7.0298e-01, - 1DIAGNOSTIC, 13, -9.405450483457e-01, 5.780074669001e-04, 1.1509e+01, 6.8408e-01, - 1DIAGNOSTIC, 14, -9.412131698889e-01, 4.611266634507e-04, 1.2182e+01, 6.7258e-01, - 1DIAGNOSTIC, 15, -9.418382706862e-01, 3.777553773924e-04, 1.2860e+01, 6.7867e-01, - 1DIAGNOSTIC, 16, -9.424291992192e-01, 3.179475080654e-04, 1.3541e+01, 6.8025e-01, - 1DIAGNOSTIC, 17, -9.429595005030e-01, 2.726832789626e-04, 1.4210e+01, 6.6910e-01, - 1DIAGNOSTIC, 18, -9.434748124575e-01, 2.366416410788e-04, 1.4883e+01, 6.7319e-01, - 1DIAGNOSTIC, 19, -9.439578657429e-01, 2.074202302213e-04, 1.5565e+01, 6.8190e-01, - 1DIAGNOSTIC, 20, -9.444113589511e-01, 1.832616475985e-04, 1.6242e+01, 6.7713e-01, - 1DIAGNOSTIC, 21, -9.448375015026e-01, 1.629678686422e-04, 1.6920e+01, 6.7839e-01, - 1DIAGNOSTIC, 22, -9.452382066343e-01, 1.457154279372e-04, 1.7603e+01, 6.8244e-01, - 1DIAGNOSTIC, 23, -9.456273750479e-01, 1.309971830249e-04, 1.8284e+01, 6.8090e-01, - 1DIAGNOSTIC, 24, -9.459751677804e-01, 1.180290940724e-04, 1.8961e+01, 6.7702e-01, - 1DIAGNOSTIC, 25, -9.463066896576e-01, 1.065986002202e-04, 1.9636e+01, 6.7555e-01, - 1DIAGNOSTIC, 26, -9.466181969352e-01, 9.654048701496e-05, 2.0344e+01, 7.0815e-01, - 1DIAGNOSTIC, 27, -9.469041990267e-01, 8.729163721084e-05, 2.1026e+01, 6.8117e-01, - 1DIAGNOSTIC, 28, -9.471731014964e-01, 7.895879706389e-05, 2.1710e+01, 6.8464e-01, - 1DIAGNOSTIC, 29, -9.474253702874e-01, 7.143449836801e-05, 2.2395e+01, 6.8449e-01, - 1DIAGNOSTIC, 30, -9.476590304927e-01, 6.461010494212e-05, 2.3074e+01, 6.7968e-01, - 1DIAGNOSTIC, 31, -9.478770461339e-01, 5.842127837359e-05, 2.3747e+01, 6.7304e-01, - 1DIAGNOSTIC, 32, -9.480900590874e-01, 5.290858171211e-05, 2.4414e+01, 6.6670e-01, - 1DIAGNOSTIC, 33, -9.482874160283e-01, 4.811634736943e-05, 2.5093e+01, 6.7929e-01, - 1DIAGNOSTIC, 34, -9.484666123067e-01, 4.375615789003e-05, 2.5769e+01, 6.7530e-01, - 1DIAGNOSTIC, 35, -9.486335805108e-01, 3.982929637670e-05, 2.6441e+01, 6.7270e-01, - 1DIAGNOSTIC, 36, -9.487901096811e-01, 3.630155195726e-05, 2.7132e+01, 6.9082e-01, - 1DIAGNOSTIC, 37, -9.489378304597e-01, 3.309027742875e-05, 2.7819e+01, 6.8703e-01, - 1DIAGNOSTIC, 38, -9.490789719335e-01, 3.019605034692e-05, 2.8500e+01, 6.8081e-01, - 1DIAGNOSTIC, 39, -9.492130975817e-01, 2.760802234176e-05, 2.9179e+01, 6.7916e-01, - 1DIAGNOSTIC, 40, -9.493414698333e-01, 2.529488850778e-05, 2.9872e+01, 6.9278e-01, - 1DIAGNOSTIC, 41, -9.494638760025e-01, 2.323090380658e-05, 3.0552e+01, 6.8045e-01, - 1DIAGNOSTIC, 42, -9.495811284448e-01, 2.146457301791e-05, 3.1235e+01, 6.8213e-01, - 1DIAGNOSTIC, 43, -9.496932084902e-01, 1.994690496123e-05, 3.1925e+01, 6.9005e-01, - 1DIAGNOSTIC, 44, -9.498013846635e-01, 1.860823014399e-05, 3.2607e+01, 6.8256e-01, - 1DIAGNOSTIC, 45, -9.499132173999e-01, 1.746477337498e-05, 3.3288e+01, 6.8105e-01, - 1DIAGNOSTIC, 46, -9.500039823192e-01, 1.636660287823e-05, 3.3959e+01, 6.7088e-01, - 1DIAGNOSTIC, 47, -9.501089869801e-01, 1.541876823516e-05, 3.4640e+01, 6.8070e-01, - 1DIAGNOSTIC, 48, -9.501987910920e-01, 1.452948535518e-05, 3.5314e+01, 6.7375e-01, - 1DIAGNOSTIC, 49, -9.502887768076e-01, 1.370944334902e-05, 3.5990e+01, 6.7680e-01, - 1DIAGNOSTIC, 50, -9.503761818136e-01, 1.295483903197e-05, 3.6669e+01, 6.7914e-01, - 1DIAGNOSTIC, 51, -9.504607361441e-01, 1.225642808505e-05, 3.7342e+01, 6.7276e-01, - 1DIAGNOSTIC, 52, -9.505390874253e-01, 1.158828277332e-05, 3.8013e+01, 6.7074e-01, - 1DIAGNOSTIC, 53, -9.506213060725e-01, 1.098326130307e-05, 3.8688e+01, 6.7513e-01, - 1DIAGNOSTIC, 54, -9.507004688468e-01, 1.043433825486e-05, 3.9378e+01, 6.8950e-01, - 1DIAGNOSTIC, 55, -9.507876861949e-01, 1.003893585534e-05, 4.0063e+01, 6.8570e-01, - 1DIAGNOSTIC, 56, -9.508654000497e-01, 9.640281670591e-06, 4.0741e+01, 6.7738e-01, - 1DIAGNOSTIC, 57, -9.509331783377e-01, 9.286550334772e-06, 4.1428e+01, 6.8732e-01, - 1DIAGNOSTIC, 58, -9.510091758732e-01, 8.957791531761e-06, 4.2101e+01, 6.7288e-01, - 1DIAGNOSTIC, 59, -9.510847679941e-01, 8.664821708422e-06, 4.2776e+01, 6.7528e-01, - 1DIAGNOSTIC, 60, -9.511571447671e-01, 8.389909656549e-06, 4.3445e+01, 6.6930e-01, - 1DIAGNOSTIC, 61, -9.512254816316e-01, 8.113426207421e-06, 4.4126e+01, 6.8053e-01, - 1DIAGNOSTIC, 62, -9.512945084435e-01, 7.823085919428e-06, 4.4801e+01, 6.7545e-01, - 1DIAGNOSTIC, 63, -9.513620861370e-01, 7.545456936566e-06, 4.5478e+01, 6.7665e-01, - 1DIAGNOSTIC, 64, -9.514282712608e-01, 7.271220786281e-06, 4.6167e+01, 6.8896e-01, - 1DIAGNOSTIC, 65, -9.514932270205e-01, 7.048586589259e-06, 4.6837e+01, 6.6992e-01, - 1DIAGNOSTIC, 66, -9.515534429620e-01, 6.822966261370e-06, 4.7512e+01, 6.7548e-01, - 1DIAGNOSTIC, 67, -9.516099328138e-01, 6.543749299443e-06, 4.8180e+01, 6.6712e-01, - 1DIAGNOSTIC, 68, -9.516789246688e-01, 6.321778284652e-06, 4.8857e+01, 6.7765e-01, - 1DIAGNOSTIC, 69, -9.517395362491e-01, 6.126640501664e-06, 4.9535e+01, 6.7744e-01, - 1DIAGNOSTIC, 70, -9.517907930303e-01, 5.915175738610e-06, 5.0218e+01, 6.8334e-01, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.165162766222e-01, 1.797693134862e+308, 5.5889e+01, 5.6710e+00, - 1DIAGNOSTIC, 2, -9.187373101869e-01, 1.797693134862e+308, 6.1249e+01, 5.3603e+00, - 1DIAGNOSTIC, 3, -9.207691652366e-01, 1.797693134862e+308, 6.6630e+01, 5.3806e+00, - 1DIAGNOSTIC, 4, -9.226098693887e-01, 1.797693134862e+308, 7.1980e+01, 5.3504e+00, - 1DIAGNOSTIC, 5, -9.242380947421e-01, 1.797693134862e+308, 7.7425e+01, 5.4445e+00, - 1DIAGNOSTIC, 6, -9.256096086364e-01, 1.797693134862e+308, 8.2835e+01, 5.4105e+00, - 1DIAGNOSTIC, 7, -9.268527513521e-01, 1.797693134862e+308, 8.8227e+01, 5.3913e+00, - 1DIAGNOSTIC, 8, -9.279974419365e-01, 1.797693134862e+308, 9.3605e+01, 5.3788e+00, - 1DIAGNOSTIC, 9, -9.290574402146e-01, 1.797693134862e+308, 9.9082e+01, 5.4771e+00, - 1DIAGNOSTIC, 10, -9.300610091914e-01, 9.208654893571e-04, 1.0451e+02, 5.4250e+00, - 1DIAGNOSTIC, 11, -9.309128026689e-01, 7.510460355000e-04, 1.0993e+02, 5.4250e+00, - 1DIAGNOSTIC, 12, -9.317328927755e-01, 6.195507341274e-04, 1.1537e+02, 5.4415e+00, - 1DIAGNOSTIC, 13, -9.325204735784e-01, 5.184393476414e-04, 1.2075e+02, 5.3763e+00, - 1DIAGNOSTIC, 14, -9.332836836978e-01, 4.412992421525e-04, 1.2615e+02, 5.4036e+00, - 1DIAGNOSTIC, 15, -9.340217786108e-01, 3.822152254827e-04, 1.3161e+02, 5.4580e+00, - 1DIAGNOSTIC, 16, -9.347529665124e-01, 3.355112643270e-04, 1.3704e+02, 5.4242e+00, - 1DIAGNOSTIC, 17, -9.354744770702e-01, 2.986174220144e-04, 1.4246e+02, 5.4259e+00, - 1DIAGNOSTIC, 18, -9.361876458569e-01, 2.696414249353e-04, 1.4790e+02, 5.4337e+00, - 1DIAGNOSTIC, 19, -9.368932645553e-01, 2.469743633397e-04, 1.5334e+02, 5.4433e+00, - 1DIAGNOSTIC, 20, -9.375969383639e-01, 2.296082707477e-04, 1.5876e+02, 5.4204e+00, - 1DIAGNOSTIC, 21, -9.382947496418e-01, 2.149465540722e-04, 1.6418e+02, 5.4181e+00, - 1DIAGNOSTIC, 22, -9.389898158341e-01, 2.024854328044e-04, 1.6963e+02, 5.4479e+00, - 1DIAGNOSTIC, 23, -9.396691360592e-01, 1.915450814101e-04, 1.7506e+02, 5.4299e+00, - 1DIAGNOSTIC, 24, -9.403342819776e-01, 1.816489604595e-04, 1.8043e+02, 5.3791e+00, - 1DIAGNOSTIC, 25, -9.409714709019e-01, 1.721985545105e-04, 1.8584e+02, 5.4015e+00, - 1DIAGNOSTIC, 26, -9.415818568738e-01, 1.629521570984e-04, 1.9126e+02, 5.4233e+00, - 1DIAGNOSTIC, 27, -9.421694475483e-01, 1.537664981232e-04, 1.9668e+02, 5.4244e+00, - 1DIAGNOSTIC, 28, -9.427203046952e-01, 1.444394532428e-04, 2.0208e+02, 5.3995e+00, - 1DIAGNOSTIC, 29, -9.432179199064e-01, 1.347116684936e-04, 2.0755e+02, 5.4690e+00, - 1DIAGNOSTIC, 30, -9.436675616000e-01, 1.245735087769e-04, 2.1298e+02, 5.4315e+00, - 1DIAGNOSTIC, 31, -9.440708918330e-01, 1.140874094701e-04, 2.1842e+02, 5.4391e+00, - 1DIAGNOSTIC, 32, -9.444322752716e-01, 1.034734436051e-04, 2.2384e+02, 5.4132e+00, - 1DIAGNOSTIC, 33, -9.447514874099e-01, 9.287822886034e-05, 2.2928e+02, 5.4483e+00, - 1DIAGNOSTIC, 34, -9.450341787802e-01, 8.256310792997e-05, 2.3466e+02, 5.3753e+00, - 1DIAGNOSTIC, 35, -9.452862454276e-01, 7.272088635209e-05, 2.4011e+02, 5.4528e+00, - 1DIAGNOSTIC, 36, -9.455112338099e-01, 6.356788007702e-05, 2.4559e+02, 5.4823e+00, - 1DIAGNOSTIC, 37, -9.457125851541e-01, 5.534705298408e-05, 2.5106e+02, 5.4633e+00, - 1DIAGNOSTIC, 38, -9.458990286948e-01, 4.819720557540e-05, 2.5655e+02, 5.4878e+00, - 1DIAGNOSTIC, 39, -9.460671665234e-01, 4.202477964348e-05, 2.6204e+02, 5.4921e+00, - 1DIAGNOSTIC, 40, -9.462256830294e-01, 3.679457759945e-05, 2.6759e+02, 5.5532e+00, - 1DIAGNOSTIC, 41, -9.463695819970e-01, 3.238795766988e-05, 2.7304e+02, 5.4522e+00, - 1DIAGNOSTIC, 42, -9.465070830505e-01, 2.873640849642e-05, 2.7857e+02, 5.5238e+00, - 1DIAGNOSTIC, 43, -9.466322392047e-01, 2.568006907814e-05, 2.8396e+02, 5.3912e+00, - 1DIAGNOSTIC, 44, -9.467469584298e-01, 2.308609127524e-05, 2.8933e+02, 5.3764e+00, - 1DIAGNOSTIC, 45, -9.468536491212e-01, 2.085852344854e-05, 2.9477e+02, 5.4394e+00, - 1DIAGNOSTIC, 46, -9.469542974244e-01, 1.892124064916e-05, 3.0021e+02, 5.4314e+00, - 1DIAGNOSTIC, 47, -9.470488686093e-01, 1.720661960464e-05, 3.0562e+02, 5.4108e+00, - 1DIAGNOSTIC, 48, -9.471386922723e-01, 1.570442103025e-05, 3.1105e+02, 5.4370e+00, - 1DIAGNOSTIC, 49, -9.472254370144e-01, 1.437987326183e-05, 3.1652e+02, 5.4638e+00, - 1DIAGNOSTIC, 50, -9.473040570982e-01, 1.321230765222e-05, 3.2207e+02, 5.5547e+00, -XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST - 1DIAGNOSTIC, 1, -9.183418607669e-01, 1.797693134862e+308, 3.6903e+02, 4.6963e+01, - 1DIAGNOSTIC, 2, -9.190829203859e-01, 1.797693134862e+308, 4.1387e+02, 4.4832e+01, - 1DIAGNOSTIC, 3, -9.202785251920e-01, 1.797693134862e+308, 4.5787e+02, 4.4001e+01, - 1DIAGNOSTIC, 4, -9.215689034947e-01, 1.797693134862e+308, 5.0214e+02, 4.4272e+01, - 1DIAGNOSTIC, 5, -9.228517820073e-01, 1.797693134862e+308, 5.4723e+02, 4.5091e+01, - 1DIAGNOSTIC, 6, -9.240888821385e-01, 1.797693134862e+308, 5.9409e+02, 4.6859e+01, - 1DIAGNOSTIC, 7, -9.252809366725e-01, 1.797693134862e+308, 6.4113e+02, 4.7044e+01, - 1DIAGNOSTIC, 8, -9.264367354358e-01, 1.797693134862e+308, 6.8798e+02, 4.6850e+01, - 1DIAGNOSTIC, 9, -9.274172204838e-01, 1.797693134862e+308, 7.3370e+02, 4.5720e+01, - 1DIAGNOSTIC, 10, -9.282514354548e-01, 7.250200740077e-04, 7.7959e+02, 4.5886e+01, - 1DIAGNOSTIC, 11, -9.288784748083e-01, 6.387843034637e-04, 8.2408e+02, 4.4492e+01, - 1DIAGNOSTIC, 12, -9.293784507548e-01, 5.412967221997e-04, 8.7022e+02, 4.6142e+01, - 1DIAGNOSTIC, 13, -9.297792777695e-01, 4.474734165237e-04, 9.1428e+02, 4.4060e+01, - 1DIAGNOSTIC, 14, -9.301014837847e-01, 3.616190825235e-04, 9.5832e+02, 4.4036e+01, - 1DIAGNOSTIC, 15, -9.303756012890e-01, 2.859662743814e-04, 1.0025e+03, 4.4154e+01, - 1DIAGNOSTIC, 16, -9.306177587969e-01, 2.218448912789e-04, 1.0466e+03, 4.4171e+01, - 1DIAGNOSTIC, 17, -9.308551094193e-01, 1.705408529672e-04, 1.0906e+03, 4.3988e+01, - 1DIAGNOSTIC, 18, -9.309919750112e-01, 1.311289058971e-04, 1.1354e+03, 4.4810e+01, - 1DIAGNOSTIC, 19, -9.311262126729e-01, 1.016813380286e-04, 1.1797e+03, 4.4269e+01, - 1DIAGNOSTIC, 20, -9.311842154908e-01, 7.942063085706e-05, 1.2239e+03, 4.4224e+01, - Elapsed time (stage 2): 1224 - - -Total elapsed time: 1272 - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:29 EDT 2024: -COMMAND -->  rm -rf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_Warped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_InverseWarped.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_Warped.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:29 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-nativepro_desc-T1wbold.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat,1] -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-nativepro_desc-T1wbold.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1InverseWarp.nii.gz (type = DisplacementFieldTransform) - 2. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_desc-me_task-rest_bold_mean.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:32 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-T1w.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-T1w.nii.gz - -[ INFO ]..... Creating transformations file: func space <<>> T1nativepro  - -[ INFO ]..... Clean fMRI image has been processed (no FIX).  -cp: cannot stat '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_HP.nii.gz': No such file or directory -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc - -[ INFO ]..... Calculating tissue-specific and global signals changes  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:37 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_0.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:40 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:41 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_pve_CSF.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_CSF.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5719 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:41 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_1.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:44 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_pve_GM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_GM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5890 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:44 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/anat/sub-PNC010_ses-03_space-nativepro_T1w_brain_pve_2.nii.gz -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -Default pixel value: 0 -Interpolation type: LinearInterpolateImageFunction -Output warped image: /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:47 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz -thr 0.9 /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:47 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_pve_WM.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_WM.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5991 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:47 EDT 2024: -COMMAND -->  fslmeants -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_global.txt -m /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_brain_mask.nii.gz -w  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -Image Exception : #22 :: Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -terminate called after throwing an instance of 'std::runtime_error' - what(): Failed to read volume /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -Error : No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 5996 Aborted (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:17:48 EDT 2024: -COMMAND -->  fsl_motion_outliers -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_spikeRegressors_REFRMS.1D -s /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_metric_REFRMS.1D --refmse --nomoco  -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -Image Exception : #63 :: No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -No image files match: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc -(standard_in) 1: syntax error -Could not find a supported file with prefix "/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc" - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:33 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine1.mat  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:35 EDT 2024: -COMMAND -->  c3d_affine_tool -itk /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -o /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine2.mat -inv  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:35 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:37 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:38 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:40 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:40 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine1.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:41 EDT 2024: -COMMAND -->  wb_command -surface-apply-affine /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/affine2.mat /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:42 EDT 2024: -COMMAND -->  wb_command -surface-apply-warpfield /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii -trilinear  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii -trilinear - -ERROR: NAME OF FILE: sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsnative  -ls: cannot access '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-*_surf-*.func.gii': No such file or directory - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.L.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-L_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-L_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-L mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-5k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsLR-5k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsLR-5k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-5k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsLR-32k.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsLR-32k.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsLR-32k_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsLR-32k  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: -COMMAND -->  wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii  - -While running: -/data/mica1/01_programs/workbench-1.4.2/bin_linux64/../exe_linux64/wb_command -metric-resample /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_surf-fsnative_label-sphere.surf.gii /mica/mica1/03_projects/yigu/software/micapipe/surfaces/fsaverage5.R.sphere.reg.surf.gii ADAP_BARY_AREA /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_surf-fsaverage5.func.gii -area-surfs /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/surf/sub-PNC010_ses-03_hemi-R_space-nativepro_surf-fsaverage5_label-midthickness.surf.gii - -ERROR: NAME OF FILE: sub-PNC010_ses-03_hemi-R_surf-fsnative.func.gii -PATH TO FILE: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf - -File does not exist. - - -[ INFO ]..... Subject PNC010 hemi-R mapped to fsaverage5  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:44 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz -Tmean /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_mean  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:18:53 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me.nii.gz -Tstd /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_std  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:04 EDT 2024: -COMMAND -->  fslmaths /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -div /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03/sub-PNC010_ses-03_space-func_desc-me_std.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_tSNR.nii.gz  - -[ INFO ]..... Subject PNC010 volumetric tSNR calculated  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:05 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-L_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_surf-fsnative_hemi-L_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC010 hemi-L tSNR mapped to fsnative  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:05 EDT 2024: -COMMAND -->  wb_command -volume-to-surface-mapping /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_tSNR.nii.gz /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_hemi-R_space-func_surf-fsnative_label-midthickness.surf.gii /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/surf/sub-PNC010_ses-03_surf-fsnative_hemi-R_tSNR.shape.gii -trilinear  - -[ INFO ]..... Subject PNC010 hemi-R tSNR mapped to fsnative  - -[ INFO ]..... Getting subcortical timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:05 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-subcortical.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 6995 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:07 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_subcortical.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz --exclude 0 --exclude 16 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_subcortical.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_subcortical.nii.gz - -[ INFO ]..... Getting cerebellar timeseries  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:07 EDT 2024: -COMMAND -->  antsApplyTransforms -d 3 -i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz -r /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -n MultiLabel -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz -t /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat -t [/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat,1] -o /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz -v -u int  -Using double precision for computations. -Input scalar image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz - file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc/sub-PNC010_ses-03_space-nativepro_T1w_atlas-cerebellum.nii.gz does not exist . -Reference image: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_mean.nii.gz -============================================================================= -The composite transform comprises the following transforms (in order): - 1. inverse of /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-me_task-rest_bold_to-nativepro_mode-image_desc-affine_0GenericAffine.mat (type = AffineTransform) - 2. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_0GenericAffine.mat (type = AffineTransform) - 3. /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/xfm/sub-PNC010_ses-03_from-nativepro_func_to-me_task-rest_bold_mode-image_desc-SyN_1Warp.nii.gz (type = DisplacementFieldTransform) -============================================================================= -/mica/mica1/03_projects/yigu/software/micapipe/functions/utilities.sh: line 1094: 7038 Segmentation fault (core dumped) $l_command - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:09 EDT 2024: -COMMAND -->  mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_cerebellum.txt  - -7.3.2 -cwd -cmdline mri_segstats --i /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_preproc.nii.gz --seg /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz --exclude 0 --avgwf /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_cerebellum.txt -sysname Linux -hostname valentine.bic-wks.mni.mcgill.ca -machine x86_64 -user yiguz -whitesurfname white -UseRobust 0 -Loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz -error: niiRead(): error opening file /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz -ERROR: loading /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz -** FATAL ERROR: Can't open dataset '/mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_cerebellum.nii.gz' -** Program compile date = Dec 7 2020 - -[ INFO ]..... Running func post processing  - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:19:09 EDT 2024: -COMMAND -->  python /mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py sub-PNC010_ses-03 /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold /mica/mica1/03_projects/yigu/software/micapipe/parcellations/ /mica/mica1/03_projects/yigu/software/micapipe/parcellations /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/parc 0 0 _space-func_desc-me FALSE 1  - --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- -surf directory found; lets get the party started! --+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+- - -Traceback (most recent call last): - File "/mica/mica1/03_projects/yigu/software/micapipe/functions/03_FC.py", line 99, in - sctx = np.loadtxt(funcDir+'/volumetric/' + subject + func_lab + '_timeseries_subcortical.txt') - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 1373, in loadtxt - arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter, - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/npyio.py", line 992, in _read - fh = np.lib._datasource.open(fname, 'rt', encoding=encoding) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 193, in open - return ds.open(path, mode, encoding=encoding, newline=newline) - File "/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/lib/python3.9/site-packages/numpy/lib/_datasource.py", line 533, in open - raise FileNotFoundError(f"{path} not found.") -FileNotFoundError: /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/func/desc-me_task-rest_bold/volumetric/sub-PNC010_ses-03_space-func_desc-me_timeseries_subcortical.txt not found. - - -------------------------------------------------------------- - proc_func processing ended in 72.200 minutes: - logs: - Steps completed : 15/19 - Status : INCOMPLETE - Check logs : /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/logs/proc_func_19-03-2024-3145.txt -------------------------------------------------------------- - -yiguz @ valentine.bic-wks.mni.mcgill.ca Tue Mar 19 11:20:06 EDT 2024: -COMMAND -->  micapipe_procStatus_json PNC010 03 proc_func_me_task-rest_bold /mica/mica1/03_projects/yigu/7t_funcQC/release/micapipe_v0.2.0/sub-PNC010/ses-03/QC/sub-PNC010_ses-03_module-proc_func-desc-me_task-rest_bold.json  -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/4026_micapipe_proc-func_sub-PNC010_ses-03 -micapipe tmp directory was not erased: - /mica/mica1/03_projects/yigu/7t_funcQC/release/tmp/*_micapipe*-PNC010* - - -------------------------------------------------------------- - GLOBAL micapipe running time with LOCAL-MICA processing: 72.250 minutes  -------------------------------------------------------------- ----------------> DONE PROC-FUNC FOR RUN - sub-PNC010_ses-03 -:::::::::::::::::::::::done reprocessing, check if ready for tedana QC:::::::::::::::::::: From 0d1eca1203c3f5972db3cbfaba617c6da467f192 Mon Sep 17 00:00:00 2001 From: Yigu Zhou <94867463+shyu2kko@users.noreply.github.com> Date: Thu, 21 Mar 2024 11:17:25 -0400 Subject: [PATCH 09/11] Delete functions/init.sh --- functions/init.sh | 116 ---------------------------------------------- 1 file changed, 116 deletions(-) delete mode 100755 functions/init.sh diff --git a/functions/init.sh b/functions/init.sh deleted file mode 100755 index eac707c7..00000000 --- a/functions/init.sh +++ /dev/null @@ -1,116 +0,0 @@ -#/bin/bash - -################################## -### Set variables beneath this ### -################################## - -# Permissions -umask 002 - -# Save OLD PATH -export OLD_PATH=$PATH - -#------------------------------------------------------------------------------# -# SOFTWARE CONFIGURATION for MICAPIPE -#------------------------------------------------------------------------------# -# User defined PATHS -# AFNI -export AFNIDIR="/data/mica1/01_programs/afni-20.2.06" -# ANTS -export ANTSPATH="/data/mica1/01_programs/ants-2.3.4/bin" -# Workbench -export workbench_path="/data/mica1/01_programs/workbench-1.4.2/bin_linux64" -# ICA-FIX -export FIXPATH="/data_/mica1/01_programs/fix" -# FreeSurfer -export FREESURFER_HOME="/data/mica1/01_programs/freesurfer-7.3.2" -# fastsurfer -export FASTSURFER_HOME="/data_/mica1/01_programs/fastsurfer" -export fs_licence="/data_/mica1/01_programs/freesurfer-7.3.2/license.txt" -# FSL 6.0 -export FSLDIR="/data_/mica1/01_programs/fsl-6-0-3" -export FSL_DIR="/data_/mica1/01_programs/fsl-6-0-3" -export FSL_BIN="${FSLDIR}/bin" -# MRtrix3 3.0.1 -export mrtrixDir="/data_/mica1/01_programs/mrtrix3-3.0.1" -# ITK utils -export itk_dir="/data_/mica1/01_programs/c3d-1.0.0-Linux-x86_64/bin" -# Python 3.7 -#export PYTHON_3="/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin" -# Export fs fs_licence -export fs_licence=/data_/mica1/01_programs/freesurfer-7.3.2/license.txt -# Fastsurfer singularity container -export fastsurfer_img=/data_/mica1/01_programs/fastsurfer/fastsurfer-cpu-v2.0.4.sif -unset TMPDIR -# Fastsurfer conda env - -#------------------------------------------------------------------------------# -# Remove any other instance from the PATH -# AFNI -PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*afni*});IFS=':';echo "${p[*]}";unset IFS) -# ANTS -PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*ants*});IFS=':';echo "${p[*]}";unset IFS) -# Workbench binaries -PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*workbench*});IFS=':';echo "${p[*]}";unset IFS) -# FSL -PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*fsl*});IFS=':';echo "${p[*]}";unset IFS) -# revome any other MRtrix3 version from path -PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*mrtrix*});IFS=':';echo "${p[*]}";unset IFS) -# REMOVES any other python configuration from the PATH the conda from the PATH and LD_LIBRARY_PATH variable -PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*conda*});IFS=':';echo "${p[*]}";unset IFS) -LD_LIBRARY_PATH=$(IFS=':';p=($LD_LIBRARY_PATH);unset IFS;p=(${p[@]%%*conda*});IFS=':';echo "${p[*]}";unset IFS) - -#------------------------------------------------------------------------------# -# Software configuration -# FreeSurfer 6.0 configuration -source "${FREESURFER_HOME}/FreeSurferEnv.sh" -# FSL 6.0 configuration -source "${FSLDIR}/etc/fslconf/fsl.sh" -# PYTHON 3.7 configuration -unset PYTHONPATH -unset PYTHONHOME -export LC_ALL=en_US.UTF-8 -export LANG=en_US.UTF-8 -conda3_bin=/data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/ -source /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/etc/profile.d/conda.sh - -#------------------------------------------------------------------------------# -# Set the libraries paths for mrtrx and fsl -export LD_LIBRARY_PATH="${FSLDIR}/lib:${FSL_BIN}:${mrtrixDir}/lib" - -#-----------------------------------------------------------------------------------# -# Export new PATH with al the necessary binaries -#export PATH="${AFNIDIR}:${ANTSPATH}:${workbench_path}:${FIXPATH}:${FREESURFER_HOME}/bin/:${mrtrixDir}/bin:${mrtrixDir}/lib:${FSLDIR}:${FSL_BIN}:${PYTHON_3}:${FASTSURFER_HOME}:${itk_dir}:${PATH}" -export PATH="${AFNIDIR}:${ANTSPATH}:${workbench_path}:${FIXPATH}:${FREESURFER_HOME}/bin/:${mrtrixDir}/bin:${mrtrixDir}/lib:${FSLDIR}:${FSL_BIN}:${FASTSURFER_HOME}:${itk_dir}:${conda3_bin}:${PATH}" -conda activate /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe - -#------------------------------------------------------------------------------# -#------------------------------------------------------------------------------# -# Add the number of threads to use here. Note that this is overwritten by -# $NSLOTS if it exists (i.e. when running on SGE). -local_threads="$1" -if [[ -z $local_threads ]]; then export local_threads=10; fi - -# Set basic global variables. -# export MICAPIPE="$( cd "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )" # Note: As this file is sourced by mica-pipe, this will return the mica-pipe path NOT the path of this script. -if [[ ! -z "$NSLOTS" ]]; then - export threads="$NSLOTS" -else - export threads="$local_threads" -fi -export OMP_NUM_THREADS="$threads" - -# Where processing will run -if [[ -z "$PROC" ]]; then export PROC="LOCAL-MICA"; fi - -# YIGU MODIFICATION--------- -# Set tmpDir depending on the node -#host=$(echo "$HOSTNAME" | awk -F '.' '{print $1}') -#case $host in -# fladgate*|yeatman*|oncilla*) export tmpDir="/host/$host/local_raid/temporaryLocalProcessing" ;; -# cassio*|varro*) export tmpDir="/host/$host/export02/data/temporaryLocalProcessing" ;; -# *) export tmpDir="/data/mica2/temporaryNetworkProcessing" ;; -#esac -#------------- - -export SGE_ROOT=/opt/sge From e9eae969b754130a7d97f42b8d96e94a70d9f4ff Mon Sep 17 00:00:00 2001 From: shyu2kko Date: Thu, 21 Mar 2024 11:27:51 -0400 Subject: [PATCH 10/11] restored init and micapipe --- ._.DS_Store | Bin 0 -> 4096 bytes ._micapipe | Bin 0 -> 4096 bytes functions/._init.sh | Bin 0 -> 4096 bytes functions/init.sh | 114 +++++ micapipe | 1102 +++++++++++++++++++++++++++++++++++++++++++ 5 files changed, 1216 insertions(+) create mode 100644 ._.DS_Store create mode 100644 ._micapipe create mode 100644 functions/._init.sh create mode 100644 functions/init.sh create mode 100644 micapipe diff --git a/._.DS_Store b/._.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..75fb90c524419483491d881104f870f15c2aab50 GIT binary patch literal 4096 zcmZQz6=P>$Vqox1Ojhs@R)|o50+1L3ClDJkFz{^v(m+1nBL)UWIhYCu0iY;W;207T z#K2(O4AH?*fmP9{;AjYphQMeDjE2By2#kinXb6mkz-S1JhQMeDjE2By2v9i$7=h-2 zFc`>%WMmdA6r~pDmlh?bDx~EXWh-Rnm89mCWaj53=Hyf=w1 QnnLwI+$%B+a{vDW0QYnqi~s-t literal 0 HcmV?d00001 diff --git a/._micapipe b/._micapipe new file mode 100644 index 0000000000000000000000000000000000000000..b801deaf486b7b4435964832c7e7ca96424609f1 GIT binary patch literal 4096 zcmeH~yH3L}6oyYg2oO@m0u!pdFuHZpT%4Ar&{hIefuIs>$VnX%H8&Dhf{|BYV&pM+ z4ql`O6!L}R*K1MK-((qMTW^TxxJ6)Y7|%4JEb_M`xZ-}QtGHfDmg zC&S*U;K@zM3qB~aqy$2!-m$H~w{(kk22sI-?6G6%ElOywg^6xbY`S(IyM6lvQ^z*C z?!eHUW5dhis1$^}Xlr-7M_!zH?NErkY&Vpa>`eihv@Z2q*%IfFhs>C<2PW>Iqb4 zY-z}#J_@4}6}-%*h0jrt6%!Ptf=k<(r7Vu0P|O2?yqKjE>4jI{&Hvx{^Z#G(A3%LJ F`vi0rS@-|| literal 0 HcmV?d00001 diff --git a/functions/._init.sh b/functions/._init.sh new file mode 100644 index 0000000000000000000000000000000000000000..76e624c20de1c1446017acd1716045a5197a1d1e GIT binary patch literal 4096 zcmeH~O-sWt7{{L~q9P10dXfVaN+Z4Tc8J_Y$_$SYkmnXm5A2#+kVGUr&IJ&q-w`dVn4z|^>0BWyF)w=c$VAR$8 zkLZp@R{)0}^Aqrn!OByWCW6^k+vVx^DN`)#J)t(gK=)0Z>$;M2w z_GH*Ul_I$bMIi=7mXttew9{X|Tw?irOvfXUnM>3rH4b?!?r|y_DN-*P&iCZ3ZFy(?_ z(>J-`wr6=`a=Ep0rg~Ok7;}a7g)ZfMInk;KXabsmCZGvu0-As(pb2OKnt&#-dIFUh zTN*N`kHV-#g($OW!37GkVuGSn3S~R9l*REAibWuiAG36#yzuI~`TrY#{{QR!1E|kt EpDLSM5dZ)H literal 0 HcmV?d00001 diff --git a/functions/init.sh b/functions/init.sh new file mode 100644 index 00000000..6b50f894 --- /dev/null +++ b/functions/init.sh @@ -0,0 +1,114 @@ +#/bin/bash + +################################## +### Set variables beneath this ### +################################## + +# Permissions +umask 002 + +# Save OLD PATH +export OLD_PATH=$PATH + +#------------------------------------------------------------------------------# +# SOFTWARE CONFIGURATION for MICAPIPE +#------------------------------------------------------------------------------# +# User defined PATHS +# AFNI +export AFNIDIR="/data/mica1/01_programs/afni-20.2.06" +# ANTS +export ANTSPATH="/data/mica1/01_programs/ants-2.3.4/bin" +# Workbench +export workbench_path="/data/mica1/01_programs/workbench-1.4.2/bin_linux64" +# ICA-FIX +export FIXPATH="/data_/mica1/01_programs/fix" +# FreeSurfer +export FREESURFER_HOME="/data/mica1/01_programs/freesurfer-7.3.2" +# fastsurfer +export FASTSURFER_HOME="/data_/mica1/01_programs/fastsurfer" +export fs_licence="/data_/mica1/01_programs/freesurfer-7.3.2/license.txt" +# FSL 6.0 +export FSLDIR="/data_/mica1/01_programs/fsl-6-0-3" +export FSL_DIR="/data_/mica1/01_programs/fsl-6-0-3" +export FSL_BIN="${FSLDIR}/bin" +# MRtrix3 3.0.1 +export mrtrixDir="/data_/mica1/01_programs/mrtrix3-3.0.1" +# ITK utils +export itk_dir="/data_/mica1/01_programs/c3d-1.0.0-Linux-x86_64/bin" +# Python 3.7 +#export PYTHON_3="/data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe/bin" +# Export fs fs_licence +export fs_licence=/data_/mica1/01_programs/freesurfer-7.3.2/license.txt +# Fastsurfer singularity container +export fastsurfer_img=/data_/mica1/01_programs/fastsurfer/fastsurfer-cpu-v2.0.4.sif +unset TMPDIR +# Fastsurfer conda env + +#------------------------------------------------------------------------------# +# Remove any other instance from the PATH +# AFNI +PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*afni*});IFS=':';echo "${p[*]}";unset IFS) +# ANTS +PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*ants*});IFS=':';echo "${p[*]}";unset IFS) +# Workbench binaries +PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*workbench*});IFS=':';echo "${p[*]}";unset IFS) +# FSL +PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*fsl*});IFS=':';echo "${p[*]}";unset IFS) +# revome any other MRtrix3 version from path +PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*mrtrix*});IFS=':';echo "${p[*]}";unset IFS) +# REMOVES any other python configuration from the PATH the conda from the PATH and LD_LIBRARY_PATH variable +PATH=$(IFS=':';p=($PATH);unset IFS;p=(${p[@]%%*conda*});IFS=':';echo "${p[*]}";unset IFS) +LD_LIBRARY_PATH=$(IFS=':';p=($LD_LIBRARY_PATH);unset IFS;p=(${p[@]%%*conda*});IFS=':';echo "${p[*]}";unset IFS) + +#------------------------------------------------------------------------------# +# Software configuration +# FreeSurfer 6.0 configuration +source "${FREESURFER_HOME}/FreeSurferEnv.sh" +# FSL 6.0 configuration +source "${FSLDIR}/etc/fslconf/fsl.sh" +# PYTHON 3.7 configuration +unset PYTHONPATH +unset PYTHONHOME +export LC_ALL=en_US.UTF-8 +export LANG=en_US.UTF-8 +conda3_bin=/data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/bin/ +source /data/mica1/01_programs/micapipe-v0.2.0_conda/conda3/etc/profile.d/conda.sh + +#------------------------------------------------------------------------------# +# Set the libraries paths for mrtrx and fsl +export LD_LIBRARY_PATH="${FSLDIR}/lib:${FSL_BIN}:${mrtrixDir}/lib" + +#-----------------------------------------------------------------------------------# +# Export new PATH with al the necessary binaries +#export PATH="${AFNIDIR}:${ANTSPATH}:${workbench_path}:${FIXPATH}:${FREESURFER_HOME}/bin/:${mrtrixDir}/bin:${mrtrixDir}/lib:${FSLDIR}:${FSL_BIN}:${PYTHON_3}:${FASTSURFER_HOME}:${itk_dir}:${PATH}" +export PATH="${AFNIDIR}:${ANTSPATH}:${workbench_path}:${FIXPATH}:${FREESURFER_HOME}/bin/:${mrtrixDir}/bin:${mrtrixDir}/lib:${FSLDIR}:${FSL_BIN}:${FASTSURFER_HOME}:${itk_dir}:${conda3_bin}:${PATH}" +conda activate /data/mica1/01_programs/micapipe-v0.2.0_conda/micapipe + +#------------------------------------------------------------------------------# +#------------------------------------------------------------------------------# +# Add the number of threads to use here. Note that this is overwritten by +# $NSLOTS if it exists (i.e. when running on SGE). +local_threads="$1" +if [[ -z $local_threads ]]; then export local_threads=10; fi + +# Set basic global variables. +# export MICAPIPE="$( cd "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )" # Note: As this file is sourced by mica-pipe, this will return the mica-pipe path NOT the path of this script. +if [[ ! -z "$NSLOTS" ]]; then + export threads="$NSLOTS" +else + export threads="$local_threads" +fi +export OMP_NUM_THREADS="$threads" + +# Where processing will run +if [[ -z "$PROC" ]]; then export PROC="LOCAL-MICA"; fi + +# Set tmpDir depending on the node +host=$(echo "$HOSTNAME" | awk -F '.' '{print $1}') +case $host in + fladgate*|yeatman*|oncilla*) export tmpDir="/host/$host/local_raid/temporaryLocalProcessing" ;; + cassio*|varro*) export tmpDir="/host/$host/export02/data/temporaryLocalProcessing" ;; + *) export tmpDir="/data/mica2/temporaryNetworkProcessing" ;; +esac + +export SGE_ROOT=/opt/sge diff --git a/micapipe b/micapipe new file mode 100644 index 00000000..9d011207 --- /dev/null +++ b/micapipe @@ -0,0 +1,1102 @@ +#!/bin/bash +# +# MICA BIDS structural processing +# +version() { + echo -e "\nMICAPIPE January 2024 (Version v0.2.3 'Northern flicker')\n" +} +#---------------- FUNCTION: HELP ----------------# +help() { +echo -e " +\033[38;5;141mCOMMAND:\033[0m + $(basename $0) + + +\033[38;5;141mARGUMENTS:\033[0m +\t\033[38;5;197m-sub\033[0m : Subject identification +\t\033[38;5;197m-out\033[0m : Output directory for the processed files . +\t\033[38;5;197m-bids\033[0m : Path to BIDS directory +\t\033[38;5;120m-ses\033[0m : OPTIONAL flag that indicates the session name (if omitted will manage as SINGLE session) + + Flags for basic stages of processing: +\t\033[38;5;197m-proc_structural\033[0m : Volumetric processing +\t\033[38;5;197m-proc_surf\033[0m : Cortical surface reconstruction processing +\t\t\t ( Requires: -proc_structural ) + + Flags for second stages of structural processing: +\t\033[38;5;197m-post_structural\033[0m : Post structural volumetric processing +\t\t\t ( Requires: -proc_structural and -proc_surf ) +\t\033[38;5;197m-proc_dwi\033[0m : DWI-Diffusion weighted images processing with MRtrix3 +\t\t\t ( Requires: -proc_structural ) +\t\033[38;5;197m-proc_asl\033[0m : ASL-Arterial spin labelling processing +\t\t\t ( Requires: -proc_structural ) +\t\033[38;5;197m-proc_flair\033[0m : T2/FLAIR processing +\t\t\t ( Requires: -proc_structural ) + + Flags for third stage, the connectome generation: +\t\033[38;5;197m-proc_func\033[0m : Funtional MRI processing and functional connectome generation +\t\t\t ( Requires: -proc_structural, -proc_surf and -post_structural ) +\t\033[38;5;197m-SC\033[0m : Structural connectome generation +\t\t\t ( Requires: -proc_dwi, -post_structural) +\t\033[38;5;197m-MPC\033[0m : Microstructural profiles and covariance analysis +\t\t\t ( Requires: -proc_surf and -post_structural ) +\t\033[38;5;197m-GD\033[0m : Geodesic distance analysis +\t\t\t ( Requires: -proc_surf and -post_structural ) +\t\033[38;5;197m-SWM\033[0m : Superficial White Matter generation and mapping +\t\t\t ( Requires: -post_structural ) +\t\033[38;5;197m-MPC_SWM\033[0m : MPC Superficial White Matter analysis +\t\t\t ( Requires: -post_structural ) + + Other functions: +\t\033[38;5;197m-cleanup\033[0m : Use this flag with a module flag to erase its outputs +\t\t\t ( Modules with multiple acquisitions require -acqStr (e.g. -proc_func, -MPC) +\t\033[38;5;197m-QC\033[0m : Creates a group level quality control report +\t\033[38;5;197m-QC_subj\033[0m : Creates a Subject quality control report + +\033[38;5;141mOPTIONAL ARGUMENTS FOR SUBMODULES:\033[0m +\t\033[38;5;197m-proc_structural\033[0m +\t \033[38;5;120m-T1wStr\033[0m : String to manually identify the main scan(s) for structural processing. separated by a comma, no blank spaces. +\t\t\t Default string is 'T1w.nii'. Multiple inputs example = '-T1wStr run-01_T1w,run-02_T1w' +\t \033[38;5;120m-uni\033[0m : Special workflow to use the UNI-T1map image as the structural reference (eg. 7T UNI-T1map). +\t\t\t Default = no processing of UNI-T1maps +\t \033[38;5;120m-mf\033[0m : Multiplying factor for the mp2rage denoising. Greater value removes more noise (eg. UNI-T1map use with -uni). +\t\t\t Default = 3 (7T), recomended value of 45 for 3T MP2RAGE + +\t\033[38;5;197m-proc_surf\033[0m +\t \033[38;5;120m-surf_dir\033[0m : If freesurfer/FastSurfer has been performed, it will create a symbolic link for compatibility +\t\t\t Prove full path to the subject's directory: e.g. /freesurfer/sub-001_ses-01 +\t \033[38;5;120m-freesurfer\033[0m : Use this option to reconstruct the cortical surface with Freesurfer 7. +\t\t\t Default surface reconstruction uses 'FastSurfer' +\t \033[38;5;120m-fs_licence\033[0m : Provide the full path to the freesurface licence. +\t\t\t e.g. /home/documents/licence.txt'. If you don't have a licence you can get one here: https://surfer.nmr.mgh.harvard.edu/registration.html +\t \033[38;5;120m-T1\033[0m : Overwrite the t1 input, MUST be 'nii.gz'. Use the full path to a T1w image to be processed. +\t\t\t By default micapipe uses t1nativepro to generate the surfaces. + + +\t\033[38;5;197m-post_structural\033[0m +\t \033[38;5;120m-atlas\033[0m : Registers only the selected the parcellations separated by a comma, no blank spaces (eg. economo,aparc). +\t\t\t Default is the 18 parcellations provided in the pipeline +\t \033[38;5;120m-freesurfer\033[0m : Use this option to reconstruct the cortical surface with Freesurfer 7. +\t\t\t Default surface reconstruction uses 'FastSurfer' + +\t\033[38;5;197m-proc_dwi\033[0m +\t \033[38;5;120m-dwi_main\033[0m : Full path to DWI with N number of directions and b0. If used, it will overwrite the defaults. +\t\t\t Default = //dwi/*_dir-AP_dwi.nii* +\t \033[38;5;120m-dwi_rpe\033[0m : DWI b0 image(s) with phase reversal encoding. If used, it will overwrite the defaults. +\t\t\t Default = //dwi/_dir-PA_dwi.nii* +\t\t\t Set to 'FALSE' if no DWI with reverse fase encoding will be provided +\t \033[38;5;120m-dwi_processed\033[0m : DWI processed, if file is provided the pre-processing of the DWIs will be skipped. +\t\t\t MUST be a mif (MRtrix image format) with bvecs, bvals, PhaseEncodingDirection and ReadoutTime encoded +\t \033[38;5;120m-rpe_all\033[0m : If all DWI directions & b-values are acquired twice this option can be used. +\t\t\t This option requires that both encoding contains the same number of volumes +\t \033[38;5;120m-regAffine\033[0m : Specify this option to perform an Affine registration ONLY from dwi to T1w. +\t\t\t Default is non linear registration SyN +\t \033[38;5;120m-dwi_acq\033[0m : Provide a string with this this flag to process new DWI acquisition. +\t\t\t This will create a new directory here: dwi/acq- +\t \033[38;5;120m-b0thr\033[0m : Specifies the b-value threshold for determining those image volumes that correspond to b=0. +\t\t\t Default = 61 . This value will vary from DWI acquisition and from scanner to scanner (3T or 7T) +\t \033[38;5;120m-no_bvalue_scaling\033[0m : Disable scaling of diffusion b-values by the square of the corresponding DW gradient norm. +\t\t\t Default is scaling. See more on MRtrix3 documentation +\t \033[38;5;120m-regSynth\033[0m : Specify this option to perform the registration based on synthseg. +\t \033[38;5;120m-dwi_upsample\033[0m : Use this flag to upsample the DWI to 1.25x1.25x1.25 to increase anatomical contrast (e.g. Low resolution DWI datasets). + +\t\033[38;5;197m-proc_func\033[0m +\t \033[38;5;120m-mainScanStr\033[0m : String to manually identify the main scan for func processing (eg. func/sub-001_.nii.gz) +\t\t\t Default='task-rest_acq-AP_bold' +\t\t\t Multiple strings separate by comma and no blank space for multiecho acquisitions ( e.g. 'echo1,echo2,echo3' ) +\t \033[38;5;120m-func_pe\033[0m : Full path to the main phase encoding scan for func processing +\t\t\t Default='task-rest_acq-APse_bold' +\t \033[38;5;120m-func_rpe\033[0m : Full path to the reverse phase encoding scan for func processing (If the path is wrong TOPUP won't run!) +\t\t\t Default='task-rest_acq-PAse_bold' +\t \033[38;5;120m-mainScanRun\033[0m : If multiple resting-state scans exist in the BIDS rawdata, +\t\t\t you must specify which scan to process ( e.g. '1' ) +\t \033[38;5;120m-phaseReversalRun\033[0m : If multiple phase encoding files exist in the BIDS rawdata (main phase), +\t\t\t you must specify which one to process ( e.g. '1' ) +\t \033[38;5;120m-topupConfig\033[0m : Path to specified config file for topup +\t\t\t ( distortion correction; eg. file.cnf ) +\t \033[38;5;120m-NSR\033[0m : Specify this option to perform white matter and CSF signal regression of timeseries +\t\t\t ( default = no white matter and CSF signal regression ) +\t \033[38;5;120m-GSR\033[0m : Specify this option to perform global, white matter and CSF signal regression of timeseries +\t\t\t ( default = no global, white matter and CSF signal regression ) +\t \033[38;5;120m-noFIX\033[0m : Specify this option to skip ICA-FIX processing. +\t\t\t ( default = FIX is run with specified training file ) +\t \033[38;5;120m-icafixTraining\033[0m : Path to specified ICA-FIX training file for nuisance signal regression ( file.RData ) +\t\t\t ( default = \$MICAPIPE/functions/MICAMTL_training_15HC_15PX.RData ) +\t \033[38;5;120m-sesAnat\033[0m : If longitudinal data is provided this flag allows to register the func session to the selected anatomical session +\t\t\t ( default processing is independent ) +\t \033[38;5;120m-dropTR\033[0m : Specify this option to drop the first five TRs. +\t\t\t ( default is FALSE ) +\t \033[38;5;120m-noFC\033[0m : Specify this option to skip the Functional Connectome generation (e.g. func-task). +\t\t\t ( default is FALSE ) + +\t\033[38;5;197m-SC\033[0m +\t \033[38;5;120m-tracts \033[0m : Number of streamlines, where 'M' stands for millions (default=40M) +\t \033[38;5;120m-keep_tck\033[0m : If provided, the tractogram will be copied to '/micapipe//dwi' +\t \033[38;5;120m-autoTract\033[0m : Automatic tractogram segmentation (This is an optional procedure) +\t \033[38;5;120m-filter\033[0m : Algorithm for tractogram filtering ( default = 'SIFT2' ['COMMIT2', 'both']) +\t \033[38;5;120m-dwi_acq\033[0m : Provide the acquisition name from DWI which will be use to generate the SC, if it is different from default. +\t \033[38;5;120m-weighted_SC\033[0m : Weight the SC by a quantitative map in DWI space (e.g. FA, ADC, qT1 or MT). None by default. +\t \033[38;5;120m-tck\033[0m : Provide a pre-calculated whole brain tractography (tck) in DWI space to generate the connectomes. + + +\t\033[38;5;197m-MPC\033[0m and \033[38;5;197m-MPC_SWM\033[0m +\t \033[38;5;120m-microstructural_img\033[0m : Path to scan on which MPC will be performed ( ./img.nii.gz ) +\t\t\t If left blank or omitted, defaults to using qT1 identified through BIDS directory structure +\t \033[38;5;120m-microstructural_reg\033[0m : Path to scan which will be register to the surface ( ./img_2reg.nii.gz ) +\t\t\t It MUST be on the same space as the main microstructural image!! +\t\t\t If it is EMPTY will try to find a T1map from here: anat/*mp2rage*T1map.nii* +\t\t\t Set to 'FALSE' to use microstructural_img for registrations +\t \033[38;5;120m-mpc_acq\033[0m : Provide a string with this this flag to process new quantitative map. +\t\t\t ( this will create a new directory here: anat/surf/micro_profiles/acq- ) +\t \033[38;5;120m-regSynth\033[0m : Specify this option to perform the registration based on synthseg. +\t \033[38;5;120m-reg_nonlinear\033[0m : Specify this option to perform the NON-Linear registration (e.g. MRI with strong geometric distortions). + +\t\033[38;5;197m-proc_asl\033[0m +\t \033[38;5;120m-aslScanStr\033[0m : String to manually identify the ASL scan for processing (eg. perf/sub-001_.nii[.gz]) +\t\t\t Default='asl' +\t \033[38;5;120m-m0ScanStr\033[0m : String to manually identify the M0 calibration scan for processing (eg. perf/sub-001_.nii[.gz]) +\t\t\t Default='m0scan' + +\t\033[38;5;197m-proc_flair\033[0m +\t \033[38;5;120m-flairScanStr\033[0m : String to manually identify the T2/FLAIR scan for processing (eg. anat/sub-001_.nii[.gz]) +\t\t\t Default='FLAIR' + +\t\033[38;5;197m-cleanup\033[0m +\t \033[38;5;120m-acqStr\033[0m : String to manually identify the acquisition to be erase + + +\033[38;5;141mOPTIONS:\033[0m +\t\033[38;5;197m-h|-help\033[0m : Print help +\t\033[38;5;197m-v|-version\033[0m : Print software version +\t\033[38;5;197m-force\033[0m : WARNING this will overwrite the subject directory +\t\033[38;5;197m-quiet\033[0m : Do not print comments +\t\033[38;5;197m-nocleanup\033[0m : Do not delete temporal directory at script completion +\t\033[38;5;197m-threads\033[0m : Number of threads (Default is 6) +\t\033[38;5;197m-tmpDir\033[0m : Specify location of temporary directory (Default is /tmp) +\t\033[38;5;197m-mica\033[0m : Only for MICA local processing +\t\033[38;5;197m-qsub\033[0m : Only for MICA network processing (SGE mica.q) +\t\033[38;5;197m-qall\033[0m : Only for MICA network processing (SGE all.q) + + +\033[38;5;141mUSAGE:\033[0m + \033[38;5;141m$(basename $0)\033[0m \033[38;5;197m-sub\033[0m \033[38;5;197m-out\033[0m \033[38;5;197m-bids\033[0m \033[38;5;197m-proc_structural\033[0m \033[38;5;197m-proc_surf\033[0m + \033[38;5;141m$(basename $0)\033[0m \033[38;5;197m-sub\033[0m \033[38;5;197m-out\033[0m \033[38;5;197m-bids\033[0m \033[38;5;197m-proc_dwi\033[0m + +\033[38;5;141mDOCUMENTATION:\033[0m + https://micapipe.readthedocs.io + +\033[38;5;141mREPOSITORY:\033[0m + https://github.com/MICA-MNI/micapipe + +\033[38;5;141mDEPENDENCIES:\033[0m + > AFNI 23.1.09 (https://afni.nimh.nih.gov/download) + > ANTs 2.3.3 (https://github.com/ANTsX/ANTs) + > FSL 6.0.2 (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki) + > Freesurfer 7.3.2 (https://surfer.nmr.mgh.harvard.edu/) + > MRtrix3 3.0.1 (https://www.mrtrix.org) + > workbench 1.4.2s + > python 3.9.15 + > R 3.6.3 + > FIX 1.06 (FMRIB's ICA-based Xnoiseifier) + + +McGill University, MNI, MICA-lab +https://github.com/MICA-MNI/micapipe +http://mica-mni.github.io/ +" +} + +# Source utilities functions from MICAPIPE +MICAPIPE=$(dirname $(realpath "$0")) +source "${MICAPIPE}/functions/utilities.sh" + +# -----------------------------------------------------------------------------------------------# +# ARGUMENTS +# Create VARIABLES +argCP="$@" +for arg in "$@" +do + case "$arg" in + -h|-help) + help + exit 1 + ;; + -v|-version) + version + exit 1 + ;; + -sub) + id=$2 + shift;shift + ;; + -out) + out=$2 + shift;shift + ;; + -bids) + BIDS=$2 + shift;shift + ;; + -ses) + SES=$2 + shift;shift + ;; + -proc_structural) + procVOL=TRUE + shift + ;; + -proc_surf) + procSurf=TRUE + shift + ;; + -proc_dwi) + procDWI=TRUE + shift + ;; + -dwi_processed) + dwi_processed="$2" + shift;shift; + ;; + -dwi_acq) + dwi_acq=TRUE + dwi_str=$2 + shift;shift + ;; + -b0thr) + b0thr=${2} + shift;shift; + ;; + -no_bvalue_scaling) + bvalscale=no + shift + ;; + -proc_func) + procFunc=TRUE + shift + ;; + -topupConfig) + configFileInput=TRUE + configFile=$2 + shift;shift + ;; + -icafixTraining) + icaFileInput=TRUE + trainingFile=$2 + shift;shift + ;; + -mainScanRun) + specMainScan=TRUE + thisMainScan=$2 + shift;shift + ;; + -mainScanStr) + mainScanStr=$2 + shift;shift + ;; + -func_pe) + func_pe=$2 + shift;shift + ;; + -func_rpe) + func_rpe=$2 + shift;shift + ;; + -sesAnat) + sesAnat=$2 + shift;shift + ;; + -phaseReversalRun) + specPhase=TRUE + thisPhase=$2 + shift;shift + ;; + -NSR) + NSR=TRUE + shift + ;; + -GSR) + GSReg=TRUE + shift + ;; + -regAffine) + regAffine=TRUE + shift + ;; + -noFIX) + skipFIX=TRUE + shift + ;; + -dropTR) + dropTR=TRUE + shift + ;; + -noFC) + noFC=TRUE + shift + ;; + -proc_flair) + procFLAIR=TRUE + shift + ;; + -flairScanStr) + flairScanStr="$2" + shift;shift; + ;; + -post_structural) + postVOL=TRUE + shift + ;; + -SC) + postDWI=TRUE + shift + ;; + -GD) + postGD=TRUE + shift + ;; + -MPC) + postMPC=TRUE + shift + ;; + -MPC_SWM) + MPC_SWM=TRUE + shift + ;; + -reg_nonlinear) + reg_nonlinear=TRUE + shift + ;; + -microstructural_img) + input_im=$2 + shift;shift + ;; + -microstructural_reg) + mpc_reg=$2 + shift;shift + ;; + -mpc_acq) + mpc_acq=TRUE + mpc_str=$2 + shift;shift + ;; + -regSynth) + synth_reg=TRUE + shift + ;; + -QC) + QCgroup=TRUE + shift + ;; + -QC_subj) + qcsubj=TRUE + shift + ;; + -mica) + mica=TRUE + shift + ;; + -tracts) + tracts=$2 + shift;shift + ;; + -keep_tck) + keep_tck=TRUE + shift + ;; + -autoTract) + autoTract=TRUE + shift + ;; + -weighted_SC) + weighted_SC=$2 + shift;shift + ;; + -tck) + tck_file=$2 + shift;shift + ;; + -tmpDir) + tmpDir=$2 + shift;shift; + ;; + -T1wStr) + T1wStr="$2" + shift;shift; + ;; + -atlas) + atlas="$2" + shift;shift; + ;; + -surf_dir) + surfdir=$2 + shift;shift; + ;; + -freesurfer) + FreeSurfer=TRUE + shift + ;; + -fs_licence) + fs_licence=$2 + shift;shift; + ;; + -T1) + t1="$2" + shift;shift; + ;; + -uni) + UNI=TRUE + shift + ;; + -mf) + MF="$2" + shift;shift; + ;; + -dwi_main) + dwi_main="$2" + shift;shift; + ;; + -dwi_rpe) + dwi_rpe="$2" + shift;shift; + ;; + -dwi_upsample) + dwi_upsample=TRUE + shift + ;; + -SWM) + SWM=TRUE + shift + ;; + -rpe_all) + rpe_all=TRUE + shift + ;; + -qsub) + micaq=TRUE + shift + ;; + -qall) + qall=TRUE + shift + ;; + -nocleanup) + nocleanup=TRUE + shift + ;; + -cleanup) + cleanup=TRUE + shift + ;; + -acqStr) + acqStr=$2 + shift;shift + ;; + -threads) + threads=$2 + shift;shift + ;; + -force) + force=TRUE + shift + ;; + -quiet) + quiet=TRUE + shift + ;; + -proc_asl) + procASL=TRUE + shift + ;; + -aslScanStr) + aslScanStr=$2 + shift;shift + ;; + -m0ScanStr) + m0ScanStr=$2 + shift;shift + ;; + -*) + Error "Unknown option ${1}" + exit 1 + ;; + esac +done + +# Argument check out & WARNINGS +if [ "$QCgroup" = "TRUE" ]; then + if [ -z ${out} ]; then + Error "For Quality Control -out is mandatory!!! + -out : $out" + exit 1; + else + out=$(realpath $out) + Do_cmd python ${MICAPIPE}/functions/QC_group.py -out ${out} + exit 0 + fi +fi + +# argument check out & WARNINGS +missing_arg + +runs=($procVOL $procSurf $postVOL $procDWI $procASL $procFLAIR $procFunc $procTask $postDWI $postGD $postMorph $postMPC $qtest $qcsubj $cleanup $SWM $MPC_SWM) +if [ "${#runs[@]}" -lt 1 ]; then +Error "A processing flag is missing: + -proc_structural + -proc_surfs + -post_structural + -proc_dwi + -proc_asl + -proc_flair + -proc_func + -SC + -MPC + -GD + -SWM + -MPC_SWM + -QC_subj + -cleanup" +exit 1; fi + +# -----------------------------------------------------------------------------------------------# +# Call micapipe_cleanup within micapipe +echo -e "\n\nmicapipe ${argCP}" +if [[ $cleanup == "TRUE" ]]; then "${MICAPIPE}"/functions/micapipe_cleanup ${argCP/-cleanup/}; exit; fi + +# Optional arguments func +optarg_func=($configFile $trainingFile $thisMainScan $thisPhase) +if [[ $configFileInput == "TRUE" ]]; then optarg_func[0]=$configFile; else optarg_func[0]=DEFAULT; fi +if [[ $icaFileInput == "TRUE" ]]; then optarg_func[1]=$trainingFile; else optarg_func[1]=DEFAULT; fi +if [[ $specMainScan == "TRUE" ]]; then optarg_func[2]=$thisMainScan; else optarg_func[2]=DEFAULT; fi +if [[ $specPhase == "TRUE" ]]; then optarg_func[3]=$thisPhase; else optarg_func[3]=DEFAULT; fi +if [[ $NSR == "TRUE" ]]; then performNSR=1; else performNSR=0; fi +if [[ $GSReg == "TRUE" ]]; then performGSR=1; else performGSR=0; fi +if [[ $skipFIX == "TRUE" ]]; then noFIX=1; else noFIX=0; fi +if [[ $dropTR == "TRUE" ]]; then dropTR=TRUE; else dropTR=FALSE; fi +if [ -z "$mainScanStr" ]; then mainScanStr=DEFAULT; fi +if [ -z "$func_pe" ]; then func_pe=DEFAULT; else func_pe=$(realpath $func_pe); fi +if [ -z "$func_rpe" ]; then func_rpe=DEFAULT; else func_rpe=$(realpath $func_rpe); fi +if [ -z "$sesAnat" ]; then sesAnat=FALSE; fi +if [ -z "${regAffine}" ]; then regAffine=FALSE; else regAffine=TRUE; fi +if [ -z "${noFC}" ]; then noFC=FALSE; else noFC=TRUE; fi + +# Optional arguments mpc +if [[ ${mpc_acq} == "TRUE" ]]; then mpc_str=${mpc_str}; else mpc_str=DEFAULT; fi +if [ -z ${input_im} ]; then input_im=DEFAULT; else input_im=$(realpath $input_im); fi +if [ -z ${mpc_reg} ]; then + mpc_reg=DEFAULT +elif [ ${mpc_reg} == "FALSE" ]; then + mpc_reg=$(realpath $input_im) +else + mpc_reg=$(realpath $mpc_reg) +fi +if [[ ${synth_reg} == "TRUE" ]]; then synth_reg=${synth_reg}; else synth_reg="FALSE"; fi +if [[ ${reg_nonlinear} == "TRUE" ]]; then reg_nonlinear=${reg_nonlinear}; else reg_nonlinear="FALSE"; fi + +# Optional arguments SC +if [ -z ${tracts} ]; then tracts=40M; else tracts=$tracts; fi +if [ -z ${autoTract} ]; then autoTract=FALSE; else autoTract=TRUE; fi +if [ -z ${keep_tck} ]; then keep_tck=FALSE; else keep_tck=TRUE; fi +if [ -z ${weighted_SC} ]; then weighted_SC=FALSE; else weighted_SC=$(realpath ${weighted_SC}); fi +if [ -z ${tck_file} ]; then tck_file=FALSE; else tck_file=$(realpath ${tck_file}); fi + +# Optional arguments proc_dwi +# User provided DWI main phase +if [ -z ${dwi_main} ]; then + dwi_main=DEFAULT +else + IFS=',' read -ra dwis_main <<< $dwi_main + for i in "${!dwis_main[@]}"; do dwis_main[i]=$(realpath ${dwis_main[$i]}); done # Full path + dwi_main=$(IFS=','; echo "${dwis_main[*]}") +fi +# User provided DWI reverse phase encoded +if [ -z ${dwi_rpe} ]; then + dwi_rpe=DEFAULT +elif [ ${dwi_rpe} == "FALSE" ]; then + dwi_rpe=${dwi_rpe} +else + IFS=',' read -ra dwis_rpe <<< $dwi_rpe + for i in "${!dwis_rpe[@]}"; do dwis_rpe[i]=$(realpath ${dwis_rpe[$i]}); done # Full path + dwi_rpe=$(IFS=','; echo "${dwis_rpe[*]}") +fi +if [ -z ${rpe_all} ]; then rpe_all="FALSE"; else rpe_all="TRUE"; fi +if [[ $dwi_acq == "TRUE" ]]; then dwi_str=${dwi_str}; else dwi_str=DEFAULT; fi +if [ -z ${b0thr} ]; then b0thr=61; else b0thr=${b0thr}; fi +if [ -z ${bvalscale} ]; then bvalscale=DEFAULT; else bvalscale=no; fi +if [[ $dwi_upsample == "TRUE" ]]; then dwi_upsample=${dwi_upsample}; else dwi_upsample="FALSE"; fi + +# Optional arguments proc_asl +if [ -z "${aslScanStr}" ]; then aslScanStr=DEFAULT; fi +if [ -z "${m0ScanStr}" ]; then m0ScanStr=DEFAULT; fi + +# Optional arguments proc_flair (DEFAULT is *FLAIR.nii*) +if [ -z "${flairScanStr}" ]; then flairScanStr=DEFAULT; fi + +# Get the real path of the Inputs +inputs_realpath + +# Number of session (Default is "ses-pre") +if [ -z ${SES} ]; then SES="SINGLE"; else SES="ses-${SES/ses-/}"; fi + +# Assigns variables names +bids_variables "$BIDS" "$id" "$out" "$SES" + +# Check BIDS Directory +if [ ! -d "${subject_bids}" ]; then Error "$id was not found on the BIDS directory\n\t Check ls ${subject_bids}"; exit 1; fi + +# Erase temporal files by default +if [ -z ${nocleanup} ]; then nocleanup=FALSE; fi + +# No print Do_cmd +if [ "$quiet" = "TRUE" ]; then export quiet=TRUE; fi + +# Temporal directory +if [ -z ${tmpDir} ]; then export tmpDir=/tmp; else tmpDir=$(realpath $tmpDir); fi + +# Surface directory (if already exists) +if [ -z ${surfdir} ]; then surfdir="FALSE"; else surfdir=$(realpath $surfdir); fi +if [ -z ${FreeSurfer} ]; then FreeSurfer="FALSE"; else FreeSurfer="TRUE"; fi +if [ -z ${t1} ]; then t1=DEFAULT; else t1=$(realpath $t1); fi + +# Altas selection (DEFAULT is the 18 of micapipe) +if [ -z ${atlas} ]; then atlas=DEFAULT; else atlas="$atlas"; fi + +# T1w image to process (DEFAULT is *T1w.nii*) +if [ -z ${T1wStr} ]; then T1wStr=DEFAULT; else T1wStr="$T1wStr"; fi +if [ -z ${UNI} ]; then UNI="FALSE"; else UNI="TRUE"; fi +if [ -z ${MF} ]; then MF=3; else MF="${MF}"; fi + +# Processed DWI +if [ -z ${dwi_processed} ]; then dwi_processed="FALSE"; else dwi_processed=$(realpath $dwi_processed); fi + +# -----------------------------------------------------------------------------------------------# +Title "MICA pipeline - (Version $Version) \n\t\tSubject: $id Session: $SES" + +# -----------------------------------------------------------------------------------------------# +# Launch the init file for local processing at MICA lab +if [ "$micaq" = "TRUE" ] || [ "$qall" = "TRUE" ] || [ "$mica" = "TRUE" ]; then + source "${MICAPIPE}/functions/init.sh" "$threads" +else + + # -----------------------------------------------------------------------------------------------# + # CHECK PACKAGES DEPENDENCIES + # Dicom to nifti X converter + if [[ -z $(which dcm2niix) ]]; then Error "Check your dcm2niix installation"; exit 1; fi + # tree display + if [[ -z $(which tree) ]]; then Warn "tree function was not found"; fi + # MRtrix3 + if [[ -z $(which mrinfo) ]]; then Error "MRtrix3 was not found"; exit 1; fi + # freesurfer + if [[ -z $(which recon-all) ]]; then Error "FreeSurfer was not found"; exit 1; fi + # FSL + if [[ -z $(which flirt) ]]; then Error "FSL was not found"; exit 1; fi + # AFNI + if [[ -z $(which 3dresample) ]]; then Error "AFNI was not found"; exit 1; fi + # ANTSx + if [[ -z $(which antsRegistration) ]]; then Error "ANTs was not found"; exit 1; fi + # workbench + if [[ -z $(which wb_command) ]]; then Error "WorkBench was not found"; exit 1; fi + # fix + if [[ -z $(which fix) ]]; then Warning "fix was not found, ICA-FIX will be skipped"; fi + # R + if [[ -z $(which R) ]]; then Warning "R was not found"; fi + # c3d + if [[ -z $(which c3d_affine_tool) ]]; then Warning "c3d was not found"; fi +fi + +# Freesurfer fs_licence +if [ -z ${fs_licence} ]; then Error "Freesurfer licence was not found: Use -fs_licence"; exit 1; else fs_licence=$(realpath $fs_licence); fi +if [ ! -f ${fs_licence} ]; then Error "Freesurfer licence file was not found: \n\t\t Check ls ${fs_licence}"; exit 1; fi +Note "Freesurfer licence:" ${fs_licence} +export FS_LICENSE=${fs_licence} +# Processing +if [[ -z $PROC ]]; then export PROC="LOCAL"; fi + +# Number of THREADS used by ANTs and workbench, default is 6 if not defined by -threads +if [[ -z $threads ]]; then export threads=6; fi + +# Directories check +if [[ ${force} == TRUE ]]; then + Warning "$id processing directory will be overwritten" + rm -rf $out/${subject}; +fi + +# -----------------------------------------------------------------------------------------------# +# Timer & Beginning +aloita=$(date +%s) + +# micapipe working Directory +if [ ! -d "${out}" ]; then Do_cmd mkdir -m 777 -p "$out"; fi + +# Create tmp dir +if [ ! -d ${tmpDir} ]; then Do_cmd mkdir -m 777 -p $tmpDir; fi + +# -----------------------------------------------------------------------------------------------# +# subject_dir +# Creates subject directory if it doesn't exist +if [ ! -d "${subject_dir}" ]; then + Info "Subject ${idBIDS} directory doesn't exist, creating..." + Do_cmd mkdir -m 770 -p "${subject_dir}"/{logs,xfm,dwi,func,anat,QC,parc,surf,maps} +fi + +# Pipeline description json +micapipe_json +if [ ! -f "${out}/dataset_description.json" ]; then micapipe_json; fi +if [ ! -f "${out}/micapipe_processed_sub.csv" ]; then echo "Subject, Session, Module, Status, Progress, User, Workstation, Date, Processing.time, Processing, Version" > "${out}/micapipe_processed_sub.csv"; fi + +# -----------------------------------------------------------------------------------------------# +# Structural processing: Volumetric +# -----------------------------------------------------------------------------------------------# +if [ "$procVOL" = "TRUE" ]; then + log_file_str=$dir_logs/proc_structural_$(date +'%Y-%m-%d_%H.%M.%S') + COMMAND="${scriptDir}/01_proc-structural.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $T1wStr $UNI $MF" + # mica.q - Structural processing: Volumetric + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - Structural processing: Volumetric" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_volumetric -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC + # all.q - Structural processing: Volumetric + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - Structural processing: Volumetric" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_volumetric -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC + else + # LOCAL Structural processing: Volumetric + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# # # Surface processing: Freesurfer | FastSurfer +if [ "$procSurf" = "TRUE" ]; then + log_file_str=$dir_logs/proc_surf_$(date +'%Y-%m-%d_%H.%M.%S') + COMMAND="${scriptDir}/01_proc-surf.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $surfdir $FreeSurfer $fs_licence $t1" + # mica.q - Surface processing + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - Surface processing" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_surf -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC + # all.q - Surface processing + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - Surface processing" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_surf -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC + else + # LOCAL - Surface processing + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# POST Structural processing mica-02 +# -----------------------------------------------------------------------------------------------# +# # # POST Structural processing +# REQUIRES -proc_structural and -proc_surf +if [ "$postVOL" = "TRUE" ]; then + log_file_str=$dir_logs/post_structural_$(date +'%Y-%m-%d_%H.%M.%S') + COMMAND="${scriptDir}/02_post-structural.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $atlas $FreeSurfer" + # mica.q - POST Structural processing + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - POST Structural processing" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_pstStruc -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + # all.q - POST Structural processing + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - POST Structural processing" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_pstStruc -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + else + # LOCAL - post_structural processing + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# # # Diffusion processing +# -----------------------------------------------------------------------------------------------# +# Diffusion processing +if [ "$procDWI" = "TRUE" ]; then + if [[ ${dwi_str} != "DEFAULT" ]]; then log_str=_${dwi_str}; else log_str=""; fi + log_file_str=$dir_logs/proc_dwi_$(date +'%Y-%m-%d_%H.%M.%S')${log_str} + COMMAND="${scriptDir}/02_proc-dwi.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $dwi_main $dwi_rpe $dwi_processed $rpe_all $regAffine $dwi_str $b0thr $bvalscale $synth_reg $dwi_upsample" + # mica.q - Diffusion processing + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - Diffusion processing" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_dwi -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + # all.q - Diffusion processing + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - Diffusion processing" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_dwi -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + else + # LOCAL - Diffusion processing + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# # # Arterial spin labelling processing +# -----------------------------------------------------------------------------------------------# +# Arterial spin labelling processing +if [ "$procASL" = "TRUE" ]; then + log_file_str=$dir_logs/proc_asl_$(date +'%Y-%m-%d_%H.%M.%S') + COMMAND="${scriptDir}/02_proc-asl.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $aslScanStr $m0ScanStr" + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - Arterial spin labelling processing" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_asl -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + # all.q - POST Structural processing + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - Arterial spin labelling processing" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_asl -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + else + # LOCAL - post_structural processing + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# # # T2/FLAIR processing +# -----------------------------------------------------------------------------------------------# +# T2/FLAIR processing +if [ "$procFLAIR" = "TRUE" ]; then + log_file_str=$dir_logs/proc_flair_$(date +'%Y-%m-%d_%H.%M.%S') + COMMAND="${scriptDir}/02_proc-flair.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $flairScanStr" + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - T2/FLAIR processing" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_flair -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + # all.q - flair processing + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - T2/FLAIR processing" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_flair -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + else + # LOCAL - flair processing + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# POST Microstructural profile covariance mica-03 +# -----------------------------------------------------------------------------------------------# +# Generates microstructural profiles and covariance matrices +# REQUIRES -proc_structural and -proc_surf +if [ "$postMPC" = "TRUE" ]; then + rand=${RANDOM} + log_file_str="$dir_logs/MPC_$(date +'%d-%m-%Y')-${rand}" + COMMAND="${scriptDir}/03_MPC.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir ${input_im} ${mpc_reg} ${mpc_str} ${synth_reg} ${reg_nonlinear}" + jobName="q${rand}_mpc" + # mica.q - Microstructural profile covariance + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - Microstructural profile covariance" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=6G -N "${jobName}" -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + qsub -q mica.q -hold_jid "${jobName}" -N "${jobName/q/r}" "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" + # all.q - Microstructural profile covariance + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - Microstructural profile covariance" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N "${jobName}" -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + qsub -q all.q -hold_jid "${jobName}" -N "${jobName/q/r}" "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" + else + # LOCAL - Microstructural-Structural processing + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" + fi +fi + +# -----------------------------------------------------------------------------------------------# +# POST Geodesic distance mica-03 +# -----------------------------------------------------------------------------------------------# +# Generates geodesic distance matrices calculated along cortical surface mesh +# REQUIRES -post-structural and -proc_surf +if [ "$postGD" = "TRUE" ]; then + log_file_str=$dir_logs/GD_$(date +'%Y-%m-%d_%H.%M.%S') + COMMAND="${scriptDir}/03_GD.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir" + # mica.q - Geodesic distance + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - Geodesic distance" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=6G -N q${id}_gd -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + # all.q - Geodesic distance + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - Geodesic distance" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N q${id}_gd -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + else + # LOCAL - Geodesic distance processing + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# Superficial White Matter +# -----------------------------------------------------------------------------------------------# +# Generates superficial white matter surfaces 01,02 and 03 +# REQUIRES -post-structural +if [ "$SWM" = "TRUE" ]; then + log_file_str=$dir_logs/SWM_$(date +'%Y-%m-%d_%H.%M.%S') + COMMAND="${scriptDir}/03_SWM.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir" + # Command running + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt +fi + +# -----------------------------------------------------------------------------------------------# +# Microstructural Profile Covariance - Superficial White Matter +# -----------------------------------------------------------------------------------------------# +# Generates superficial white matter surfaces based MPC +# REQUIRES -post-structural +if [ "$MPC_SWM" = "TRUE" ]; then + rand=${RANDOM} + log_file_str="$dir_logs/MPC-SWM_$(date +'%Y-%m-%d_%H.%M.%S')-${rand}" + COMMAND="${scriptDir}/03_MPC-SWM.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir ${input_im} ${mpc_reg} ${mpc_str} ${synth_reg} ${reg_nonlinear}" + # Command running + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + "${scriptDir}"/rename_log.sh "${log_file_str}" "acqMRI" "${rand}" +fi + +# -----------------------------------------------------------------------------------------------# +# SC: Structural Connectome processing (tractography) +# -----------------------------------------------------------------------------------------------# +# REQUIRES -proc_dwi +if [ "$postDWI" = "TRUE" ]; then + if [[ ${dwi_str} != "DEFAULT" ]]; then log_str=_${dwi_str}; else log_str=""; fi + log_file_str=$dir_logs/SC-${tracts}_$(date +'%Y-%m-%d_%H.%M.%S')${log_str} + COMMAND="${scriptDir}/03_SC.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir $tracts $autoTract $keep_tck $dwi_str $weighted_SC $tck_file" + # mica.q - post-DWI processing (tractography) + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - POST DWI processing (tractography)" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + qsub -q mica.q -pe smp $threads -l h_vmem=1.5G -N q${id}_SC -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + # all.q - post-DWI processing (tractography) + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - POST DWI processing (tractography)" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + qsub -q all.q -pe all.pe $threads -l h_vmem=1.5G -N q${id}_SC -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + else + # LOCAL - post-DWI processing (tractography) + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# # # functional MRI +# -----------------------------------------------------------------------------------------------# +if [ "$procFunc" = "TRUE" ]; then + rand=${RANDOM} + log_file_str=$dir_logs/proc_func_$(date +'%d-%m-%Y')"-${rand}" + COMMAND="${scriptDir}/02_proc-func.sh $BIDS $id $out $SES $nocleanup $threads $tmpDir ${optarg_func[0]} ${optarg_func[1]} ${optarg_func[2]} ${optarg_func[3]} ${mainScanStr} ${func_pe} ${func_rpe} ${performNSR} ${performGSR} ${noFIX} ${sesAnat} ${dropTR} ${noFC}" + jobName="q${rand}_fun" + # mica.q - Resting state fMRI processing + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - fMRI processing" + Warning "This option only works on the MICA workstations" + export PROC="qsub-MICA" + # Info "Setting a warper to run on mica.q" + Do_cmd qsub -q mica.q -pe smp $threads -l h_vmem=6G -N ${jobName} -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + qsub -q mica.q -hold_jid "${jobName}" -N "${jobName/q/r}" "${scriptDir}"/rename_log.sh "${log_file_str}" "tagMRI" "${rand}" + # all.q - Resting state fMRI processing + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - fMRI processing" + Warning "This option only works on the McGill BIC network" + export PROC="qsub-all.q" + # Info "Setting a warper to run on all.q" + Do_cmd qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N ${jobName} -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + qsub -q all.q -hold_jid "${jobName}" -N "${jobName/q/r}" "${scriptDir}"/rename_log.sh "${log_file_str}" "tagMRI" "${rand}" + else + # LOCAL - Resting state fMRI processing + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + "${scriptDir}"/rename_log.sh "${log_file_str}" "tagMRI" "${rand}" + fi +fi + +# -----------------------------------------------------------------------------------------------# +# # # Individual QC +# -----------------------------------------------------------------------------------------------# +if [ "$qcsubj" = "TRUE" ]; then + rand=${RANDOM} + log_file_str=$dir_logs/qc_subj_$(date +'%d-%m-%Y')"-${rand}" + COMMAND="${scriptDir}/QC.sh -sub $id -ses "${SES}" -out ${out/\/micapipe_v0.2.0/} -bids $BIDS -tmpDir $tmpDir -threads $threads -PROC" + jobName="q${rand}_qc" + # mica.q - Subject QC + if [[ $micaq == "TRUE" ]]; then + Info "MICA qsub - QC Subject processing" + # Info "Setting a warper to run on mica.q" + Do_cmd qsub -q mica.q -pe smp $threads -l h_vmem=6G -N ${jobName} -e ${log_file_str}.e -o ${log_file_str}.txt $COMMAND $PROC + # all.q - Subject QC + elif [[ $qall == "TRUE" ]]; then + Info "all.q qsub - QC Subject processing" + # Info "Setting a warper to run on all.q" + Do_cmd qsub -q all.q -pe all.pe $threads -l h_vmem=6G -N ${jobName} -e ${log_file_str}.e -o ${log_file_str}.txt \ + $COMMAND $PROC + else + # LOCAL - Subject QC + $COMMAND $PROC 2>&1 | tee -a ${log_file_str}.txt + fi +fi + +# -----------------------------------------------------------------------------------------------# +# Total Running Time +lopuu=$(date +%s) +eri=$(echo "$lopuu - $aloita" | bc) +eri=$(echo print $eri/60 | perl) + +# Cleanup if processing was local +if [ $PROC == "LOCAL" ] || [ "$mica" = "TRUE" ]; then + cleanup "$tmpDir/*_micapipe*-${id}*" "$nocleanup" "$here" +fi +Title "GLOBAL micapipe running time with $PROC processing:\033[38;5;220m $(printf "%0.3f\n" ${eri}) minutes \033[38;5;141m" From 531747d0d10a47d6e906f3c7b1acf5af2058b564 Mon Sep 17 00:00:00 2001 From: Yigu Zhou <94867463+shyu2kko@users.noreply.github.com> Date: Thu, 21 Mar 2024 11:47:07 -0400 Subject: [PATCH 11/11] restored 02_proc-func.sh environment sourcing --- functions/02_proc-func.sh | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/functions/02_proc-func.sh b/functions/02_proc-func.sh index 222caccd..379e053c 100755 --- a/functions/02_proc-func.sh +++ b/functions/02_proc-func.sh @@ -49,10 +49,10 @@ here=$(pwd) #------------------------------------------------------------------------------# # qsub configuration -#if [ "$PROC" = "qsub-MICA" ] || [ "$PROC" = "qsub-all.q" ] || [ "$PROC" = "LOCAL-MICA" ]; then -# MICAPIPE=/data_/mica1/01_programs/micapipe-v0.2.0 -# source "${MICAPIPE}/functions/init.sh" "$threads" -#fi +if [ "$PROC" = "qsub-MICA" ] || [ "$PROC" = "qsub-all.q" ] || [ "$PROC" = "LOCAL-MICA" ]; then + MICAPIPE=/data_/mica1/01_programs/micapipe-v0.2.0 + source "${MICAPIPE}/functions/init.sh" "$threads" +fi # source utilities source "$MICAPIPE"/functions/utilities.sh